Your job contains 1 sequence.
>002856
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVES
LEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTAS
TPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEE
DVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRN
ILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM
GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFS
SQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGG
QKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASL
TEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMY
NMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGT
DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFD
FHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002856
(873 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2172389 - symbol:AT5G18230 species:3702 "Arabi... 1749 7.8e-260 2
UNIPROTKB|O75175 - symbol:CNOT3 "CCR4-NOT transcription c... 647 5.0e-110 3
UNIPROTKB|F6XXD6 - symbol:CNOT3 "Uncharacterized protein"... 644 1.0e-109 3
MGI|MGI:2385261 - symbol:Cnot3 "CCR4-NOT transcription co... 641 3.1e-108 3
UNIPROTKB|E2R344 - symbol:CNOT3 "Uncharacterized protein"... 632 3.9e-108 3
UNIPROTKB|E1BCS1 - symbol:CNOT3 "Uncharacterized protein"... 631 8.2e-108 3
RGD|1304771 - symbol:Cnot3 "CCR4-NOT transcription comple... 635 1.3e-107 3
FB|FBgn0033029 - symbol:l(2)NC136 "lethal (2) NC136" spec... 618 2.7e-107 3
ZFIN|ZDB-GENE-040927-6 - symbol:cnot3a "CCR4-NOT transcri... 644 1.4e-103 2
POMBASE|SPAC1B3.05 - symbol:not3 "CCR4-Not complex subuni... 553 5.6e-92 3
ASPGD|ASPL0000074489 - symbol:AN4585 species:162425 "Emer... 519 5.1e-88 2
ZFIN|ZDB-GENE-030131-5838 - symbol:cnot3b "CCR4-NOT trans... 636 7.1e-88 3
DICTYBASE|DDB_G0272056 - symbol:DDB_G0272056 "putative CC... 481 1.6e-85 3
UNIPROTKB|F1RNH3 - symbol:CNOT3 "Uncharacterized protein"... 643 1.7e-82 3
WB|WBGene00003826 - symbol:ntl-3 species:6239 "Caenorhabd... 474 6.1e-73 2
UNIPROTKB|G5EFX8 - symbol:ntl-3 "Protein NTL-3, isoform a... 474 6.1e-73 2
CGD|CAL0002492 - symbol:NOT5 species:5476 "Candida albica... 473 2.5e-53 2
UNIPROTKB|Q5A755 - symbol:NOT5 "Potential mRNA deadenylas... 473 2.5e-53 2
SGD|S000001300 - symbol:NOT3 "Component of the CCR4-NOT t... 441 1.6e-43 2
SGD|S000006276 - symbol:NOT5 "Component of the CCR4-NOT t... 339 4.5e-36 2
UNIPROTKB|H0Y5X7 - symbol:CNOT3 "CCR4-NOT transcription c... 340 3.6e-32 2
UNIPROTKB|H7C148 - symbol:CNOT3 "CCR4-NOT transcription c... 345 5.6e-32 2
UNIPROTKB|H7C3F5 - symbol:CNOT3 "CCR4-NOT transcription c... 213 3.1e-16 1
UNIPROTKB|H7C5J4 - symbol:CNOT3 "CCR4-NOT transcription c... 195 2.6e-14 1
CGD|CAL0005191 - symbol:orf19.6075 species:5476 "Candida ... 157 3.1e-10 1
SGD|S000002324 - symbol:CDC36 "Component of the CCR4-NOT ... 143 3.3e-10 2
UNIPROTKB|F1MID5 - symbol:CNOT2 "Uncharacterized protein"... 153 5.7e-09 2
UNIPROTKB|F1SH40 - symbol:CNOT2 "Uncharacterized protein"... 154 7.8e-09 2
UNIPROTKB|F1M3V0 - symbol:Cnot2 "Protein Cnot2" species:1... 153 1.0e-08 3
MGI|MGI:1919318 - symbol:Cnot2 "CCR4-NOT transcription co... 153 1.0e-08 2
UNIPROTKB|E2QSF5 - symbol:CNOT2 "Uncharacterized protein"... 153 1.0e-08 2
UNIPROTKB|Q9NZN8 - symbol:CNOT2 "CCR4-NOT transcription c... 153 1.0e-08 2
UNIPROTKB|F1LUT7 - symbol:Cnot2 "Protein Cnot2" species:1... 153 1.0e-08 2
UNIPROTKB|H0YHT6 - symbol:CNOT2 "CCR4-NOT transcription c... 142 1.2e-08 1
UNIPROTKB|F1LY92 - symbol:Cnot2 "Protein Cnot2" species:1... 153 1.4e-08 3
UNIPROTKB|F8VV52 - symbol:CNOT2 "CCR4-NOT transcription c... 153 2.8e-08 3
UNIPROTKB|E1BCE7 - symbol:CNOT2 "Uncharacterized protein"... 153 3.1e-08 3
ZFIN|ZDB-GENE-070410-70 - symbol:zgc:162316 "zgc:162316" ... 162 3.3e-08 2
UNIPROTKB|Q5ZKI3 - symbol:CNOT2 "Uncharacterized protein"... 153 4.6e-08 2
RGD|1311672 - symbol:Cnot2 "CCR4-NOT transcription comple... 142 7.9e-08 3
UNIPROTKB|Q52JK6 - symbol:VIP2 "Probable NOT transcriptio... 154 4.8e-07 2
TAIR|locus:505006107 - symbol:NOT2a "Negative on TATA les... 134 7.2e-06 3
DICTYBASE|DDB_G0289701 - symbol:DDB_G0289701 "ezrin/radix... 103 8.5e-06 2
FB|FBgn0017550 - symbol:Rga "Regena" species:7227 "Drosop... 109 1.5e-05 2
TAIR|locus:2174259 - symbol:VIP2 "VIRE2 interacting prote... 132 2.2e-05 2
DICTYBASE|DDB_G0284577 - symbol:DDB_G0284577 "putative CC... 122 3.3e-05 2
POMBASE|SPCC4G3.15c - symbol:not2 "CCR4-Not complex subun... 129 3.9e-05 1
UNIPROTKB|D4AD67 - symbol:Ktn1 "Protein Ktn1" species:101... 135 7.5e-05 1
WB|WBGene00019273 - symbol:H43E16.1 species:6239 "Caenorh... 128 0.00040 1
WB|WBGene00003825 - symbol:ntl-2 species:6239 "Caenorhabd... 120 0.00078 1
UNIPROTKB|Q10923 - symbol:ntl-2 "Protein NTL-2, isoform a... 120 0.00078 1
UNIPROTKB|O15083 - symbol:ERC2 "ERC protein 2" species:96... 124 0.00081 1
UNIPROTKB|E2QV06 - symbol:CGNL1 "Uncharacterized protein"... 125 0.00091 1
>TAIR|locus:2172389 [details] [associations]
symbol:AT5G18230 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
EMBL:CP002688 GO:GO:0006355 KO:K12580 OMA:ESIYHLP IPI:IPI00939040
RefSeq:NP_001154716.1 UniGene:At.7555 ProteinModelPortal:F4JWJ7
PRIDE:F4JWJ7 EnsemblPlants:AT5G18230.2 GeneID:831941
KEGG:ath:AT5G18230 Uniprot:F4JWJ7
Length = 845
Score = 1749 (620.7 bits), Expect = 7.8e-260, Sum P(2) = 7.8e-260
Identities = 394/614 (64%), Positives = 448/614 (72%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK--VYDTDNANQKEKFEADLKKEIKKLQRY 58
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK VYDTDN NQKEKFEADLKKEIKKLQRY
Sbjct: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRY 60
Query: 59 RDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ 118
RDQIKTWIQSSEIKDKKVSASYEQ+LVDARKLIE+EMERFKICEKETKTKAFSKEGLGQQ
Sbjct: 61 RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQ 120
Query: 119 PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH 178
PKTDPKEKAKSETRDWLNN+VSELESQIDSFEAELEGL+VKKGKTRPPRLTHLETSITRH
Sbjct: 121 PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRH 180
Query: 179 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKV 238
K HI+KLELILRLLDNDELSPEQVNDVKD L+DYVERNQDDF+EFSDVDELY LPLD+V
Sbjct: 181 KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV 240
Query: 239 ESLEDLVTIGP-----PGLVKATVISTHQQVTSV------QEQGEDTASQDSNSDVAART 287
E LEDLVT GP P +K+++ ++ QV S+ QE+ EDT+ DS++++ +T
Sbjct: 241 EGLEDLVTAGPLVKGTPLSMKSSLAASASQVRSISLPTHHQEKTEDTSLPDSSAEMVPKT 300
Query: 288 PPAKS-SGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPIS 346
PP K+ +G+ S STPA G P S+NVPA N SNTS L S + ++ G +S
Sbjct: 301 PPPKNGAGLHSAPSTPAGG--RP-SLNVPA---GNVSNTSVTLSTSIPTQTSIESMGSLS 354
Query: 347 SSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGN 406
PV + KEED P R+ S+ D + G G + +P+NG+
Sbjct: 355 ---PV----AAKEEDATTLPSRKPPSSVADTPLRGIG-RVGIPNQPQPSQPPSPIPANGS 406
Query: 407 LGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAG 466
+ ++VAKRNI+G E VQ L SPLS +M+L AKGNDGT S DSN G
Sbjct: 407 RISATSAAEVAKRNIMGVESN------VQPLTSPLS-KMVLPPTAKGNDGTAS-DSN-PG 457
Query: 467 ETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXG 524
+ A GR F+PS+ G QWR G+ FQ+QNE RGRTEIAPDQREKF G
Sbjct: 458 DVAASIGRAFSPSIVSGSQWRPGSPFQSQNET--VRGRTEIAPDQREKFLQRLQQVQQ-G 514
Query: 525 HSNLLGMPL--GGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASL 580
H NLLG+P GGN KQFSSQQ NPLLQQ SSIS LG+GVQAPG N ++SASL
Sbjct: 515 HGNLLGIPSLSGGNEKQFSSQQQNPLLQQ----SSSISPHGSLGIGVQAPGFNVMSSASL 570
Query: 581 QQQPNPIHQQSSQQ 594
QQQ N + QQ QQ
Sbjct: 571 QQQSNAMSQQLGQQ 584
Score = 775 (277.9 bits), Expect = 7.8e-260, Sum P(2) = 7.8e-260
Identities = 156/289 (53%), Positives = 189/289 (65%)
Query: 587 IHQQSSQQTLMSGGQKD-ADVSHLKVXXXXXXXXXXXXXXXXXXXXXGLGKNLIHEDDLK 645
+ QQS+ + G Q ADV H++ K + EDD K
Sbjct: 570 LQQQSNAMSQQLGQQPSVADVDHVR------NDDQSQQNLPDDSASIAASKAIQSEDDSK 623
Query: 646 APYAIDSSTGVSASLTEPAQVVRDTDXXXXXXXXXXXXXXXXXVIGRRSVSDLGAIGDSL 705
+ D+ +G+ + + +P QV D VIGRRS S+LGAIGD
Sbjct: 624 VLF--DTPSGMPSYMLDPVQVSSGPDFSPGQPIQPGQSSSSLGVIGRRSNSELGAIGDP- 680
Query: 706 SGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS 765
+ V G MHDQM+N+QMLE+AFYK PQP DSER R Y PR+PA+TP ++PQ QAPI++
Sbjct: 681 --SAV--GPMHDQMHNLQMLEAAFYKRPQPSDSERPRPYSPRNPAITPQTFPQTQAPIIN 736
Query: 766 NPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPK 825
NP WERL D+YGTDTLFFAFYYQQN+YQQYLAAKELKKQSWRYHRK+NTWFQRH+EPK
Sbjct: 737 NPLLWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQRHKEPK 796
Query: 826 VANDEFEQGTYVYFDFHIANDDLQHG-WCQRIKTEFTFEYNYLEDELIV 873
+A DE+EQG YVYFDF D+ Q G WCQRIK EFTFEY+YLEDEL+V
Sbjct: 797 IATDEYEQGAYVYFDFQTPKDENQEGGWCQRIKNEFTFEYSYLEDELVV 845
>UNIPROTKB|O75175 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
[GO:2000036 "regulation of stem cell maintenance" evidence=IMP]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 GO:GO:0000932
GO:GO:0000289 EMBL:AF180474 EMBL:AB014591 EMBL:AL133647
EMBL:BC016474 IPI:IPI00005015 IPI:IPI00186188 IPI:IPI00478453
PIR:T43456 RefSeq:NP_055331.1 UniGene:Hs.343571
ProteinModelPortal:O75175 DIP:DIP-40297N IntAct:O75175
MINT:MINT-1439009 STRING:O75175 PhosphoSite:O75175 PaxDb:O75175
PRIDE:O75175 Ensembl:ENST00000221232 Ensembl:ENST00000358389
Ensembl:ENST00000406403 Ensembl:ENST00000570333
Ensembl:ENST00000570863 Ensembl:ENST00000570970
Ensembl:ENST00000570997 Ensembl:ENST00000571055
Ensembl:ENST00000571119 Ensembl:ENST00000572058
Ensembl:ENST00000572589 Ensembl:ENST00000572598
Ensembl:ENST00000572852 Ensembl:ENST00000573388
Ensembl:ENST00000573528 Ensembl:ENST00000573769
Ensembl:ENST00000574556 Ensembl:ENST00000574815
Ensembl:ENST00000574965 Ensembl:ENST00000575585
Ensembl:ENST00000576314 Ensembl:ENST00000576558
Ensembl:ENST00000576765 Ensembl:ENST00000577005 GeneID:4849
KEGG:hsa:4849 UCSC:uc002qdj.2 CTD:4849 GeneCards:GC19P054641
HGNC:HGNC:7879 HPA:HPA006408 MIM:604910 neXtProt:NX_O75175
PharmGKB:PA26674 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 InParanoid:O75175 KO:K12580 OMA:IFYYLEP
OrthoDB:EOG41JZDJ PhylomeDB:O75175 GenomeRNAi:4849 NextBio:18674
ArrayExpress:O75175 Bgee:O75175 CleanEx:HS_CNOT3
Genevestigator:O75175 GermOnline:ENSG00000088038 Uniprot:O75175
Length = 753
Score = 647 (232.8 bits), Expect = 5.0e-110, Sum P(3) = 5.0e-110
Identities = 179/459 (38%), Positives = 238/459 (51%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--E 228
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + D+D +
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLED 233
Query: 229 LYHLLPLDKVES---LEDLVTIGPPGLVKATVISTH---QQVTSVQEQGEDTASQDSNSD 282
+ L S +ED + +T S+ E ED + ++D
Sbjct: 234 IPQALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTD 293
Query: 283 VAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGV 338
PAK S V S +PAV P P S PA ++A +T+P G +
Sbjct: 294 SEVSQSPAKNGSKPVHSNQHPQSPAVPPTYP-SGPPPA---ASALSTTPGNNGVPAPAAP 349
Query: 339 FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD-----VRVMGRGGXXXXXXXXX 393
GP +S P + + + P S PS T V+ G GG
Sbjct: 350 PSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSS 409
Query: 394 XXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSG 432
++A G S V + AE L SSG
Sbjct: 410 SSSNSSAGGGAGKQNGATSYSSVVADS--PAEVALSSSG 446
Score = 426 (155.0 bits), Expect = 5.0e-110, Sum P(3) = 5.0e-110
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 717 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 776
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667
Query: 777 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 836
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724
Query: 837 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+YFD+ W QR K FTFEY YLED
Sbjct: 725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749
Score = 72 (30.4 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
Identities = 29/85 (34%), Positives = 39/85 (45%)
Query: 279 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPG 331
S S V A +P A SS G+ AS+ A+GP + N P T S +P V PG
Sbjct: 428 SYSSVVADSPAEVALSSSGGNNASSQALGPPSGPH-NPPPSTSKEPSAAAPTGAGGVAPG 486
Query: 332 SSSVRGVFDNTGPISSSPPVNLTSS 356
S + G P+ +PP + T S
Sbjct: 487 SGNNSGGPSLLVPLPVNPPSSPTPS 511
Score = 48 (22.0 bits), Expect = 5.0e-110, Sum P(3) = 5.0e-110
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 534 GGNKQFSSQQNPLLQQFN---SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQ 590
GGN S P N S SA A G G APG + + P P++
Sbjct: 446 GGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPP 505
Query: 591 SS 592
SS
Sbjct: 506 SS 507
Score = 47 (21.6 bits), Expect = 4.3e-37, Sum P(2) = 4.3e-37
Identities = 15/71 (21%), Positives = 26/71 (36%)
Query: 248 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA 307
GPP A I + ++S++ E A D + + S+ S P
Sbjct: 524 GPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQ 583
Query: 308 TPIS---INVP 315
P+ +N+P
Sbjct: 584 PPLQLSEVNIP 594
Score = 44 (20.5 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 23/98 (23%), Positives = 33/98 (33%)
Query: 255 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINV 314
+ V + +V G + +SQ PP +S S A+ G P S N
Sbjct: 431 SVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNN 490
Query: 315 PAQTLSNASNTSPVLPGSSSVRGVFDN--TGPISSSPP 350
+ PV P SS D G + + PP
Sbjct: 491 SGGP--SLLVPLPVNPPSSPTPSFSDAKAAGALLNGPP 526
Score = 37 (18.1 bits), Expect = 7.2e-109, Sum P(3) = 7.2e-109
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 530 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 570
G L G QFS+ + S S++ +A + G++ P
Sbjct: 519 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 559
>UNIPROTKB|F6XXD6 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 CTD:4849 KO:K12580 GeneTree:ENSGT00390000014743
OMA:ESIYHLP EMBL:AAEX03000741 Ensembl:ENSCAFT00000004262
RefSeq:XP_541428.3 GeneID:484312 KEGG:cfa:484312 Uniprot:F6XXD6
Length = 753
Score = 644 (231.8 bits), Expect = 1.0e-109, Sum P(3) = 1.0e-109
Identities = 156/375 (41%), Positives = 213/375 (56%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--E 228
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + D+D +
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLED 233
Query: 229 LYHLLPLDKVES---LEDLVTIGPPGLVKATVISTH---QQVTSVQEQGEDTASQDSNSD 282
+ L S +ED + +T S+ E ED + ++D
Sbjct: 234 IPQALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTD 293
Query: 283 VAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNT 342
PAK+ ++ PA P S ++A +T+P G+S+
Sbjct: 294 SEVSQSPAKNGSKPVHSNQHPQSPAVPPSYPPGPPPATSALSTTPGNNGASTPAAPTSAL 353
Query: 343 GPISSSPPVNLTSST 357
GP +SP + +S T
Sbjct: 354 GP-KASPAPSHSSGT 367
Score = 426 (155.0 bits), Expect = 1.0e-109, Sum P(3) = 1.0e-109
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 717 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 776
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667
Query: 777 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 836
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724
Query: 837 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+YFD+ W QR K FTFEY YLED
Sbjct: 725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749
Score = 76 (31.8 bits), Expect = 7.3e-40, Sum P(3) = 7.3e-40
Identities = 31/88 (35%), Positives = 40/88 (45%)
Query: 279 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPG 331
S S V A +P A SS GS AS+ A+GP + N P T S +P V PG
Sbjct: 428 SYSSVVADSPAEVALSSSGGSGASSQALGPPSGPH-NPPPSTSKEPSAAAPAGAGGVAPG 486
Query: 332 SSSVRGVFDNTGPISSSPPVNLTSSTKE 359
S + G P+ +PP + T S E
Sbjct: 487 SGNNTGGPSLLVPLPVNPPSSPTPSFSE 514
Score = 48 (22.0 bits), Expect = 1.0e-109, Sum P(3) = 1.0e-109
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 540 SSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSS 592
S NP S+ S +A AG G GV APG + T P P++ SS
Sbjct: 459 SGPHNP--PPSTSKEPSAAAPAGAG-GV-APGSGNNTGGPSLLVPLPVNPPSS 507
Score = 47 (21.6 bits), Expect = 4.3e-37, Sum P(2) = 4.3e-37
Identities = 15/71 (21%), Positives = 26/71 (36%)
Query: 248 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA 307
GPP A I + ++S++ E A D + + S+ S P
Sbjct: 524 GPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQ 583
Query: 308 TPIS---INVP 315
P+ +N+P
Sbjct: 584 PPLQLSEVNIP 594
Score = 41 (19.5 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 746 PRHPAVTPPSYPQVQAP 762
P H + TP Y Q AP
Sbjct: 361 PSHSSGTPAPYAQAVAP 377
Score = 37 (18.1 bits), Expect = 1.5e-108, Sum P(3) = 1.5e-108
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 530 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 570
G L G QFS+ + S S++ +A + G++ P
Sbjct: 519 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 559
>MGI|MGI:2385261 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10090 "Mus musculus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:2000036 "regulation of stem cell
maintenance" evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
MGI:MGI:2385261 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0000932 CTD:4849 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 KO:K12580 OrthoDB:EOG41JZDJ EMBL:BC030332
EMBL:BC053437 EMBL:BC141041 IPI:IPI00169667 RefSeq:NP_666288.1
UniGene:Mm.358731 ProteinModelPortal:Q8K0V4 DIP:DIP-46844N
IntAct:Q8K0V4 STRING:Q8K0V4 PhosphoSite:Q8K0V4 PaxDb:Q8K0V4
PRIDE:Q8K0V4 Ensembl:ENSMUST00000038913 GeneID:232791
KEGG:mmu:232791 UCSC:uc009evl.2 GeneTree:ENSGT00390000014743
InParanoid:B2RUA7 OMA:ESIYHLP NextBio:381230 Bgee:Q8K0V4
CleanEx:MM_CNOT3 Genevestigator:Q8K0V4
GermOnline:ENSMUSG00000035632 Uniprot:Q8K0V4
Length = 751
Score = 641 (230.7 bits), Expect = 3.1e-108, Sum P(3) = 3.1e-108
Identities = 164/395 (41%), Positives = 218/395 (55%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L++ RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--E 228
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + D+D +
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLED 233
Query: 229 LYHLLPLDKVES---LEDLVTIGPPGLVKATVISTH---QQVTSVQEQGEDTASQDSNSD 282
+ L S +ED + +T S+ E ED + ++D
Sbjct: 234 IPQALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTD 293
Query: 283 VAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGV 338
PAK S V S +PAV P P P T S S+T P G+S+
Sbjct: 294 SEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSG---PPPTTSALSST-PGNNGASTPAAP 349
Query: 339 FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPS 373
GP +S P + + + P S PS
Sbjct: 350 TSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPS 384
Score = 426 (155.0 bits), Expect = 3.1e-108, Sum P(3) = 3.1e-108
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 717 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 776
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665
Query: 777 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 836
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722
Query: 837 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+YFD+ W QR K FTFEY YLED
Sbjct: 723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747
Score = 72 (30.4 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 279 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVR 336
S S V A +P SS GS+AS+ A+GP + + PA + S S+T+ +
Sbjct: 426 SYSSVVADSPAEVTLSSSGGSSASSQALGPTS--GPHNPAPSTSKESSTAAPSGAGNVAS 483
Query: 337 GVFDNTG------PISSSPPVNLTSSTKE 359
G +N+G P+ +PP + T S E
Sbjct: 484 GSGNNSGGPSLLVPLPVNPPSSPTPSFSE 512
Score = 53 (23.7 bits), Expect = 9.8e-38, Sum P(2) = 9.8e-38
Identities = 26/114 (22%), Positives = 44/114 (38%)
Query: 254 KATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTAS---TPAVGPA--T 308
+ T+ S+ S Q G + + + + A SG G+ AS + GP+
Sbjct: 437 EVTLSSSGGSSASSQALGPTSGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSGGPSLLV 496
Query: 309 PISINVPAQ---TLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKE 359
P+ +N P+ + S A +L G F T I + P++ S E
Sbjct: 497 PLPVNPPSSPTPSFSEAKAAGTLLNGPPQ----FSTTPEIKAPEPLSSLKSMAE 546
Score = 46 (21.3 bits), Expect = 9.3e-37, Sum P(3) = 9.3e-37
Identities = 31/109 (28%), Positives = 42/109 (38%)
Query: 271 GEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLP 330
G + SNS+ K +G S +S A PA TLS++ +S
Sbjct: 400 GGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEV--------TLSSSGGSS---- 447
Query: 331 GSSSVRGVFDNTGPISSSPPVNLTSSTKEED-VGNFP---GRRSS-PSL 374
SS G +GP + +P + SST GN G S PSL
Sbjct: 448 ASSQALG--PTSGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSGGPSL 494
Score = 41 (19.5 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 14/71 (19%), Positives = 24/71 (33%)
Query: 248 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA 307
GPP I + ++S++ E A D + S+ S P
Sbjct: 522 GPPQFSTTPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTDRDIILSSTSAPPTSSQ 581
Query: 308 TPIS---INVP 315
P+ +N+P
Sbjct: 582 PPLQLSEVNIP 592
Score = 40 (19.1 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 746 PRHPAVTPPSYPQVQAP 762
P H + TP Y Q AP
Sbjct: 361 PSHNSGTPAPYAQAVAP 377
Score = 40 (19.1 bits), Expect = 3.9e-36, Sum P(3) = 3.9e-36
Identities = 24/103 (23%), Positives = 37/103 (35%)
Query: 255 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINV 314
+ V + +VT G +SQ P +S STA+ G NV
Sbjct: 429 SVVADSPAEVTLSSSGGSSASSQALGPTSGPHNPAPSTSKESSTAAPSGAG-------NV 481
Query: 315 PAQTLSNASNTS-----PVLPGSSSVRGVFDN--TGPISSSPP 350
+ + +N+ S PV P SS + G + + PP
Sbjct: 482 ASGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTLLNGPP 524
Score = 37 (18.1 bits), Expect = 3.1e-108, Sum P(3) = 3.1e-108
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 530 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 570
G L G QFS+ + S S++ +A + G++ P
Sbjct: 517 GTLLNGPPQFSTTPEIKAPEPLSSLKSMAERAAISSGIEDP 557
>UNIPROTKB|E2R344 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 Ensembl:ENSCAFT00000004262 Uniprot:E2R344
Length = 710
Score = 632 (227.5 bits), Expect = 3.9e-108, Sum P(3) = 3.9e-108
Identities = 150/352 (42%), Positives = 204/352 (57%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--E 228
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + D+D +
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLED 233
Query: 229 LYHLLPLDKVES---LEDLVTIGPPGLVKATVISTH---QQVTSVQEQGEDTASQDSNSD 282
+ L S +ED + +T S+ E ED + ++D
Sbjct: 234 IPQALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTD 293
Query: 283 VAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSS 334
PAK+ ++ PA P S ++A +T+P G+S+
Sbjct: 294 SEVSQSPAKNGSKPVHSNQHPQSPALPPSYPPGPPPATSALSTTPGNNGAST 345
Score = 412 (150.1 bits), Expect = 3.9e-108, Sum P(3) = 3.9e-108
Identities = 82/153 (53%), Positives = 100/153 (65%)
Query: 717 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 776
+Q+Y M E+A++ +P P DSER R++ PR+P TPP + Q+ P F++RLS
Sbjct: 568 EQLYQQAMEEAAWHHMPHPSDSERIRTF-PRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 624
Query: 777 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 836
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 625 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 681
Query: 837 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+YFD+ W QR K FTFEY YLED
Sbjct: 682 IYFDYE--------KWGQRKKEGFTFEYRYLED 706
Score = 74 (31.1 bits), Expect = 2.7e-38, Sum P(3) = 2.7e-38
Identities = 30/86 (34%), Positives = 39/86 (45%)
Query: 281 SDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPGSS 333
S V A +P A SS GS AS+ A+GP + N P T S +P V PGS
Sbjct: 388 SSVVADSPAEVALSSSGGSGASSQALGPPSGPH-NPPPSTSKEPSAAAPAGAGGVAPGSG 446
Query: 334 SVRGVFDNTGPISSSPPVNLTSSTKE 359
+ G P+ +PP + T S E
Sbjct: 447 NNTGGPSLLVPLPVNPPSSPTPSFSE 472
Score = 59 (25.8 bits), Expect = 3.9e-108, Sum P(3) = 3.9e-108
Identities = 40/146 (27%), Positives = 52/146 (35%)
Query: 453 GNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFR------GRTEIA 506
GN+G S A T A+A R P G RT + G F G + +
Sbjct: 339 GNNGA----STPAAPTSALANRTAPPVSG---RTAGGWGGLGLAGSFHSLFPPPGYSSVV 391
Query: 507 PDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLG 566
D + S LG P G + NP S+ S +A AG G G
Sbjct: 392 ADSPAEVALSSSGGSGAS-SQALGPPSGPH-------NP--PPSTSKEPSAAAPAGAG-G 440
Query: 567 VQAPGMNSVTSASLQQQPNPIHQQSS 592
V APG + T P P++ SS
Sbjct: 441 V-APGSGNNTGGPSLLVPLPVNPPSS 465
Score = 50 (22.7 bits), Expect = 8.6e-36, Sum P(3) = 8.6e-36
Identities = 17/65 (26%), Positives = 23/65 (35%)
Query: 249 PPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPAT 308
PPG + V + +V G +SQ PP +S S A+ G
Sbjct: 384 PPGY-SSVVADSPAEVALSSSGGSGASSQALGPPSGPHNPPPSTSKEPSAAAPAGAGGVA 442
Query: 309 PISIN 313
P S N
Sbjct: 443 PGSGN 447
Score = 47 (21.6 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 15/71 (21%), Positives = 26/71 (36%)
Query: 248 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA 307
GPP A I + ++S++ E A D + + S+ S P
Sbjct: 482 GPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQ 541
Query: 308 TPIS---INVP 315
P+ +N+P
Sbjct: 542 PPLQLSEVNIP 552
Score = 43 (20.2 bits), Expect = 4.6e-35, Sum P(3) = 4.6e-35
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 288 PPAKSSGVGSTASTPAV-GPATPISINVPAQTLSNASNTSPVLPGSSS 334
PP + ++TP G +TP + P L+N T+P + G ++
Sbjct: 324 PPGPPPATSALSTTPGNNGASTPAA---PTSALAN--RTAPPVSGRTA 366
Score = 37 (18.1 bits), Expect = 8.1e-106, Sum P(3) = 8.1e-106
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 530 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 570
G L G QFS+ + S S++ +A + G++ P
Sbjct: 477 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 517
>UNIPROTKB|E1BCS1 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:DAAA02047818
IPI:IPI00685943 RefSeq:XP_002695478.1 Ensembl:ENSBTAT00000019836
GeneID:527305 KEGG:bta:527305 NextBio:20874556 Uniprot:E1BCS1
Length = 744
Score = 631 (227.2 bits), Expect = 8.2e-108, Sum P(3) = 8.2e-108
Identities = 152/368 (41%), Positives = 206/368 (55%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--E 228
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + D+D +
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLED 233
Query: 229 LYHLLPLDKVES---LEDLVTIGPPGLVKATVISTH---QQVTSVQEQGEDTASQDSNSD 282
+ L S +ED + +T S+ E ED + ++D
Sbjct: 234 IPQALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTD 293
Query: 283 VAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNT 342
PAK+ +S PA P S ++A + +P G+ +
Sbjct: 294 SEVSQSPAKNGSKPVHSSQHPQSPAVPPSYPPGPPPAASALSATPGSNGAPAAAAPASAL 353
Query: 343 GPISSSPP 350
G +S P
Sbjct: 354 GAKASPAP 361
Score = 426 (155.0 bits), Expect = 8.2e-108, Sum P(3) = 8.2e-108
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 717 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 776
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 601 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 658
Query: 777 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 836
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 659 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 715
Query: 837 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+YFD+ W QR K FTFEY YLED
Sbjct: 716 IYFDYE--------KWGQRKKEGFTFEYRYLED 740
Score = 79 (32.9 bits), Expect = 3.0e-40, Sum P(3) = 3.0e-40
Identities = 31/88 (35%), Positives = 40/88 (45%)
Query: 279 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPV-----LPG 331
S S V A +P A SS GS+ + A+GP P N P T S T+PV PG
Sbjct: 419 SYSSVVADSPAEAALSSTGGSSTGSQALGPP-PGPHNPPPSTAKEPSATAPVGAGGVAPG 477
Query: 332 SSSVRGVFDNTGPISSSPPVNLTSSTKE 359
S + G P+ +PP + T S E
Sbjct: 478 SGNNAGGPSLLVPLPVNPPSSPTPSFSE 505
Score = 47 (21.6 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 248 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSD-VAARTPPAKSSGVGSTASTPAVG- 305
GPP A I + ++S++ E A D V + + ST++ PA
Sbjct: 515 GPPQFSAAPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTERDILLSSTSAPPASAQ 574
Query: 306 PATPIS-INVP 315
P +S +N+P
Sbjct: 575 PPLQLSEVNIP 585
Score = 44 (20.5 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 746 PRHPAVTPPSYPQVQAP 762
P H A TP Y Q AP
Sbjct: 361 PSHSAGTPAPYAQAVAP 377
Score = 43 (20.2 bits), Expect = 8.2e-108, Sum P(3) = 8.2e-108
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 558 SAQAGLGLGVQAPGM-NSVTSASLQQQPNPIHQQSS 592
SA A +G G APG N+ SL P P++ SS
Sbjct: 464 SATAPVGAGGVAPGSGNNAGGPSLLV-PLPVNPPSS 498
Score = 37 (18.1 bits), Expect = 3.5e-107, Sum P(3) = 3.5e-107
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 530 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 570
G L G QFS+ + S S++ +A + G++ P
Sbjct: 510 GSLLNGPPQFSAAPEIKAPEPLSSLKSMAERAAISSGIEDP 550
>RGD|1304771 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
RGD:1304771 GO:GO:0005634 GO:GO:0006355 GO:GO:0000932 CTD:4849
KO:K12580 OrthoDB:EOG41JZDJ OMA:ESIYHLP EMBL:AC103574 EMBL:AC126217
IPI:IPI00192709 RefSeq:NP_001100941.2 UniGene:Rn.212216
Ensembl:ENSRNOT00000064411 GeneID:308311 KEGG:rno:308311
UCSC:RGD:1304771 NextBio:658574 ArrayExpress:D3ZXE8 Uniprot:D3ZXE8
Length = 751
Score = 635 (228.6 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 163/395 (41%), Positives = 221/395 (55%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L++ RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--E 228
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + D+D +
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLED 233
Query: 229 LYHLLPLDKVES---LEDLVTIGPPGLVKATVISTH---QQVTSVQEQGEDTASQDSNSD 282
+ L S +ED + +T S+ E ED + ++D
Sbjct: 234 IPQALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTD 293
Query: 283 VAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGV 338
PAK S V S +PAV P P S PA ++A +++P G+S+
Sbjct: 294 SEVSQSPAKNGSKPVHSNQHPQSPAVPPTYP-SGPPPA---TSALSSTPGNNGASTPAAP 349
Query: 339 FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPS 373
GP +S P + + + P S PS
Sbjct: 350 PSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPS 384
Score = 426 (155.0 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 717 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 776
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665
Query: 777 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 836
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722
Query: 837 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+YFD+ W QR K FTFEY YLED
Sbjct: 723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747
Score = 80 (33.2 bits), Expect = 2.7e-40, Sum P(3) = 2.7e-40
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 279 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVR 336
S S V A +P A SS GS+AS+ A+GP + P+ TL +S +P G+ SV
Sbjct: 426 SYSSVVADSPAEVALSSSGGSSASSQALGPTSGPHNPAPS-TLKESSTAAP--SGAGSVA 482
Query: 337 -GVFDNTG------PISSSPPVNLTSSTKE 359
G +N+G P+ +PP + T S E
Sbjct: 483 SGSGNNSGGPSLLVPLPVNPPSSPTPSFSE 512
Score = 54 (24.1 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 21/67 (31%), Positives = 27/67 (40%)
Query: 285 ARTPPAKSSGVGSTAS-TPA--VGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDN 341
A TP A S +G AS P+ G P + V S SN P P + G
Sbjct: 343 ASTPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGG 402
Query: 342 TGPISSS 348
+G SS+
Sbjct: 403 SGGSSSN 409
Score = 41 (19.5 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 14/71 (19%), Positives = 24/71 (33%)
Query: 248 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA 307
GPP I + ++S++ E A D + S+ S P
Sbjct: 522 GPPQFSTTPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTDRDIILSSTSAPPTSSQ 581
Query: 308 TPIS---INVP 315
P+ +N+P
Sbjct: 582 PPLQLSEVNIP 592
Score = 40 (19.1 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 746 PRHPAVTPPSYPQVQAP 762
P H + TP Y Q AP
Sbjct: 361 PSHNSGTPAPYAQAVAP 377
Score = 38 (18.4 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 271 GEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA-TPISINVPAQTLSNASN-TS-P 327
G + SNS+ K +G S +S A PA +S + + S A TS P
Sbjct: 400 GGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVALSSSGGSSASSQALGPTSGP 459
Query: 328 VLPGSSSVR 336
P S+++
Sbjct: 460 HNPAPSTLK 468
Score = 37 (18.1 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 530 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 570
G L G QFS+ + S S++ +A + G++ P
Sbjct: 517 GTLLNGPPQFSTTPEIKAPEPLSSLKSMAERAAISSGIEDP 557
>FB|FBgn0033029 [details] [associations]
symbol:l(2)NC136 "lethal (2) NC136" species:7227 "Drosophila
melanogaster" [GO:0006351 "transcription, DNA-dependent"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 EMBL:AE013599
GO:GO:0005634 GO:GO:0005737 GO:GO:0022008 GO:GO:0006355
GO:GO:0030014 GO:GO:0000289 eggNOG:COG5665 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AY069428
EMBL:BT083390 RefSeq:NP_610176.1 UniGene:Dm.2133 IntAct:Q7K126
STRING:Q7K126 EnsemblMetazoa:FBtr0086062 EnsemblMetazoa:FBtr0331970
GeneID:35501 KEGG:dme:Dmel_CG8426 UCSC:CG8426-RA
FlyBase:FBgn0033029 InParanoid:Q7K126 OrthoDB:EOG4NVX23
ChiTaRS:l(2)NC136 GenomeRNAi:35501 NextBio:793729 Uniprot:Q7K126
Length = 844
Score = 618 (222.6 bits), Expect = 2.7e-107, Sum P(3) = 2.7e-107
Identities = 154/363 (42%), Positives = 208/363 (57%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQK-----EKFEADLKKEIKKL 55
M A+RKLQGEIDR LKKV EGV+ F+ IW KV++ N NQK EK+EADLKKEIKKL
Sbjct: 1 MAATRKLQGEIDRCLKKVAEGVETFEDIWKKVHNATNTNQKQKHLQEKYEADLKKEIKKL 60
Query: 56 QRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGL 115
QR RDQIK+WI S+EIKDK +L++ R+LIE +MERFK+ E+ETKTKA+SKEGL
Sbjct: 61 QRLRDQIKSWIASAEIKDKS-------SLLENRRLIETQMERFKVVERETKTKAYSKEGL 113
Query: 116 GQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKT----RPPRLTHL 171
G K DP ++ K + R+WL + +S L+ QID +E+E+E L K K + R+ L
Sbjct: 114 GAAQKMDPAQRIKDDARNWLTSSISSLQIQIDQYESEIESLLAGKKKRLDRDKQERMDDL 173
Query: 172 ETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELY 230
+ RHK HI KLE +LRLLDND + EQVN +KD +E Y++ +Q+ DFEE +E
Sbjct: 174 RGKLDRHKFHITKLETLLRLLDNDGVEAEQVNKIKDDVEYYIDSSQEPDFEE----NEFI 229
Query: 231 HLLPLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPA 290
+ D + L+++ G AT S + TS + S S V +
Sbjct: 230 Y----DDIIGLDEVELSGT-----ATTDSNNSNETSGSPSSVTSGGSPSQSPVTVQQILN 280
Query: 291 KSS-GVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSP 349
SS G S+ S+ A + AQ SN +N S++ +T P +
Sbjct: 281 TSSQGAASSGSSAASAALFQQQLTA-AQ--SNGNNVGYASDTSAASSSATTSTDPAGGTV 337
Query: 350 PVN 352
VN
Sbjct: 338 AVN 340
Score = 440 (159.9 bits), Expect = 2.7e-107, Sum P(3) = 2.7e-107
Identities = 84/153 (54%), Positives = 104/153 (67%)
Query: 718 QMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDS 777
QM QM+E+A+Y LPQP D+E+ ++Y R P +TP YPQ Q PI F++RLS
Sbjct: 703 QM-QFQMMEAAYYHLPQPMDTEKLQTYFHRAPVLTPSHYPQAQMPIYDTVEFYQRLS--- 758
Query: 778 YGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYV 837
T+TLFF FYY + + QYLAAK LKKQSWR+H KY WFQRHEEPK+ ND++EQGTY+
Sbjct: 759 --TETLFFVFYYMEGSKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKIINDDYEQGTYI 816
Query: 838 YFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 870
YFD+ W QR K FTFEY YLED+
Sbjct: 817 YFDYE--------KWSQRKKEGFTFEYKYLEDK 841
Score = 63 (27.2 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 46/215 (21%), Positives = 83/215 (38%)
Query: 274 TASQDSN-SDVAARTPPAKSSGVGSTASTPA-VGPATPISINVPAQTLSNASNTSPVLPG 331
TA+ DSN S+ + +P + +SG GS + +P V S A + S+A++ +
Sbjct: 244 TATTDSNNSNETSGSPSSVTSG-GSPSQSPVTVQQILNTSSQGAASSGSSAASAALFQQQ 302
Query: 332 SSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR-VMGRGGXXXXXX 390
++ + +N G S + + +++T + G L D R
Sbjct: 303 LTAAQSNGNNVGYASDTSAASSSATTSTDPAGGTVAVNCVGGLADKRNKSSESNALKLKP 362
Query: 391 XXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGA-----EERLGSSGMVQSLVSPLSNRM 445
T V + L PL SD I+ + +++L ++ + + + S
Sbjct: 363 QPHQLIKPTPVRATAKL---PLSSDTQVNKIVSSTPSKNQQQLPTAASIVATSAMQSQSS 419
Query: 446 ILSQAAKGNDGTGSIDS--NNAGETVAMAGRVFTP 478
I S ++ G G S NN G A+ TP
Sbjct: 420 IGSCSSTGGTGASQSASSGNNPGNNPAVQPNAPTP 454
Score = 52 (23.4 bits), Expect = 1.7e-38, Sum P(3) = 1.7e-38
Identities = 23/103 (22%), Positives = 42/103 (40%)
Query: 252 LVKATVISTHQQVTSVQEQGEDTASQDSNSD--------VAARTPPAKSSGVGSTASTPA 303
+V + + + + S G ASQ ++S V P SG+ + A++
Sbjct: 408 IVATSAMQSQSSIGSCSSTGGTGASQSASSGNNPGNNPAVQPNAPTPGQSGIAAAAASTN 467
Query: 304 VGPATPIS-INVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPI 345
V AT +S NV Q++ + T + + +N GP+
Sbjct: 468 VVSATIVSSANVQGQSVIQPTPTIAFAAVAKHNTSLLEN-GPV 509
Score = 49 (22.3 bits), Expect = 2.2e-38, Sum P(3) = 2.2e-38
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 259 STHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 313
+ QQ+TS Q+Q Q N+ +AA T + GS A PIS N
Sbjct: 618 TNQQQLTSQQQQ------QLQNNSLAATTGSNNGTSTGSGLMNVANATGQPISGN 666
Score = 44 (20.5 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 456 GTGSIDSNNAGET 468
GT + DSNN+ ET
Sbjct: 243 GTATTDSNNSNET 255
Score = 39 (18.8 bits), Expect = 2.2e-38, Sum P(3) = 2.2e-38
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 26 DSIWNKVYDTDNANQKEKFEADLKK-EIKK--LQRYRDQIKT 64
D+I D ++ NQ++ DL++ + +K LQ + + T
Sbjct: 577 DAINRSAIDPNSLNQQQTSSIDLRQPQSQKSLLQHFNSETNT 618
Score = 37 (18.1 bits), Expect = 2.7e-107, Sum P(3) = 2.7e-107
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 537 KQFSSQQNPLLQQFNSQGSSISAQ 560
+Q SQ++ LLQ FNS+ ++ Q
Sbjct: 600 RQPQSQKS-LLQHFNSETNTNQQQ 622
>ZFIN|ZDB-GENE-040927-6 [details] [associations]
symbol:cnot3a "CCR4-NOT transcription complex,
subunit 3a" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-040927-6 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000014743 EMBL:CR854927 IPI:IPI00996653
Ensembl:ENSDART00000137699 ArrayExpress:E9QGK5 Bgee:E9QGK5
Uniprot:E9QGK5
Length = 901
Score = 644 (231.8 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 207/695 (29%), Positives = 318/695 (45%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ LV+ RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K ET WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 234
RH+ HI LE ILR+LDND + + ++ +KD +E Y++ +QD DFEE + LY L
Sbjct: 174 ERHRYHIRMLETILRMLDNDSIQVDAIHKIKDDVEYYIDSSQDPDFEEN---EFLYDDLD 230
Query: 235 LDKVESLEDLVTIGPPGLVKATV-ISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSS 293
L+ + + L+ P G ++ + + + TS S + + +S+
Sbjct: 231 LEDIPAT--LMATSPQGHIEDEMFLQSSSTPTSTTSSSPIPPSPATGTTEILEDKRGRST 288
Query: 294 GVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNL 353
S S V P + + S +S++S L ++V G SS +
Sbjct: 289 D--SEVSQSPVKNGNPSLSSFSSSASSGSSSSSSSLVSMATVVGGCTAVSG-GSSLLASF 345
Query: 354 TSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLV 413
+S+ ++ + +++ L+ + A+++PS+ G +
Sbjct: 346 SSAVQQHPPQS--QQQTQVKLSSTSIPSNNTPSPPSHPTLPASTASSLPSSSTPGPITSN 403
Query: 414 SDVAKRNILGAEER---LGSSGMV---QSLVSPLSNRMILSQAAKGNDGTGSID-SNNAG 466
S ++ G E LG G+ S VS + + S ++ N G + S A
Sbjct: 404 SLSQASSVPGVESSRLGLGKGGVTVTSSSSVSQMPGLGLTSLSSSLNTMAGLLSGSTPAP 463
Query: 467 ETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRG--RTEIAPDQREKFXXXXXXXXXXG 524
A AG + +G+S + P G T + G
Sbjct: 464 YAQAAAGGTTGGASSGPVGSGSSSAGISIPSGVVGGANTGATSNGTGTGASIGLLGSSPG 523
Query: 525 HSNLLGMPL----GGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSV--TSA 578
H L G L G + S Q P+ + G + ++GLG + G++ T+
Sbjct: 524 HGTLTGGILNLVQGQSALQGSTQVPVSPVGTAPGGG-TGESGLGGNGSSSGVSGGVGTNV 582
Query: 579 SLQQQPNPIHQQ--SSQQTLMSGGQKDADVSHLKVXXXXXXXXXXXXXXXXXXXXXGLGK 636
+ + P+ + Q +S +++ D+ +S L
Sbjct: 583 APARPPSGLKQNGATSYSAVVADNTPDSSLSSASQSQNSHSSSSSSSTNQTLDNGPSLLS 642
Query: 637 NLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTD 671
++ +P DS+ G + L P +T+
Sbjct: 643 SITLPPSTPSPAFTDSTPGGGSLLNGPHSYTPNTE 677
Score = 402 (146.6 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 80/153 (52%), Positives = 98/153 (64%)
Query: 717 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 776
+Q+Y M E+A+ +P P DSER R Y+ R+P TPP + Q+ + F++RLS
Sbjct: 758 EQLYQQAMQEAAWTHMPHPSDSERIRQYLMRNPCPTPPFHHQMPPHHSDSIEFYQRLS-- 815
Query: 777 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 836
T+TLFF FYY + T QYL+AK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 816 ---TETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 872
Query: 837 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+YFD+ W QR K FTFEY YLED
Sbjct: 873 IYFDYE--------KWGQRKKEGFTFEYRYLED 897
>POMBASE|SPAC1B3.05 [details] [associations]
symbol:not3 "CCR4-Not complex subunit Not3/5 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=IC] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
PomBase:SPAC1B3.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0006351 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850 PIR:T38023
RefSeq:NP_594789.2 STRING:O13870 EnsemblFungi:SPAC1B3.05.1
GeneID:2542126 OrthoDB:EOG4NW2V3 NextBio:20803198 Uniprot:O13870
Length = 640
Score = 553 (199.7 bits), Expect = 5.6e-92, Sum P(3) = 5.6e-92
Identities = 128/296 (43%), Positives = 184/296 (62%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62
++RKLQ EI++ KKV +G+ +FD ++ K+ +++ +QKEK E DLK +IKKLQR RDQI
Sbjct: 2 SARKLQVEIEKTFKKVTDGIAIFDEVYEKLSASNSVSQKEKLEGDLKTQIKKLQRLRDQI 61
Query: 63 KTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTD 122
KTW S++IKDKK AL++ R+LIE +ME FK E+E K KAFSKEGL K D
Sbjct: 62 KTWASSNDIKDKK-------ALLENRRLIEAKMEEFKAVEREMKIKAFSKEGLSIASKLD 114
Query: 123 PKEKAKSETRDWLNNLVSELESQIDSFEAELEGL--TVKKGKTRPPRLTHL---ETSITR 177
PKEK K +T W++N V ELE Q + EAE E L T K+GK +L+HL E+ I R
Sbjct: 115 PKEKEKQDTIQWISNAVEELERQAELIEAEAESLKATFKRGKKDLSKLSHLSELESRIER 174
Query: 178 HKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDK 237
HK H KLELI+R L+N ++SPE VND+++ + YVE +Q E+F++ + LY L LD+
Sbjct: 175 HKWHQDKLELIMRRLENSQISPEAVNDIQEDIMYYVECSQS--EDFAEDENLYDELNLDE 232
Query: 238 VESLEDLVTIGPPGLVK------ATVISTHQQVTSVQEQGEDTASQDSN-SDVAAR 286
+ D G A+ S+ + + + + E+ S D++ D+A +
Sbjct: 233 ASASYDAERSGRSSSSSHSPSPSASSSSSSENLLQDKAEAEEKVSADASVQDIAEK 288
Score = 355 (130.0 bits), Expect = 5.6e-92, Sum P(3) = 5.6e-92
Identities = 70/144 (48%), Positives = 88/144 (61%)
Query: 727 SAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFA 786
S Y +P D+ + + YIP+ P P YPQ P+ + E + DTLF+
Sbjct: 505 SCVY-VPDATDAAKPQYYIPKDPYPVPHYYPQQPLPLFDSSEMTELVD-----PDTLFYM 558
Query: 787 FYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIAND 846
FYY+ TYQQY+A +ELKKQSWR+H+KY TWFQRHEEPK+ DEFE G+Y YFDF D
Sbjct: 559 FYYRPGTYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMITDEFESGSYRYFDFE--GD 616
Query: 847 DLQHGWCQRIKTEFTFEYNYLEDE 870
W QR K +F F Y YLED+
Sbjct: 617 -----WVQRKKADFRFTYQYLEDD 635
Score = 50 (22.7 bits), Expect = 9.3e-30, Sum P(2) = 9.3e-30
Identities = 26/104 (25%), Positives = 44/104 (42%)
Query: 102 EKETKTKA-FSKEGLGQQPKTDP-KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK 159
E E K A S + + ++ D KE A ++ D + ++ E+Q D + E + +
Sbjct: 271 EAEEKVSADASVQDIAEKESLDADKELATNDQED--DEEENQAETQKDGAISNNENMQSE 328
Query: 160 KGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVN 203
T P T T+IT+ I L + ++ SPE N
Sbjct: 329 VQTTNPSASTSAVTNITKPTL-IQNPSTPLSVSNSKVASPETPN 371
Score = 49 (22.3 bits), Expect = 5.6e-92, Sum P(3) = 5.6e-92
Identities = 28/119 (23%), Positives = 53/119 (44%)
Query: 268 QEQGEDTASQDSNSDVAARTPPAKSSGVGS-TASTPAVGPATPISIN---VPAQTLSNAS 323
Q+ G + +++ S+V P A +S V + T T P+TP+S++ V + NA+
Sbjct: 314 QKDGAISNNENMQSEVQTTNPSASTSAVTNITKPTLIQNPSTPLSVSNSKVASPETPNAT 373
Query: 324 NTSP----------------VLPGSSSVRGVFDNTGPIS-SSPPVNLTS-STKEEDVGN 364
+T+P + S S + P + +SP +N T +K + +G+
Sbjct: 374 HTAPKVEMRYASAAAAAAAALAKESPSHHYIMQQVRPETPNSPRLNSTVIQSKWDSLGH 432
Score = 38 (18.4 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 27/106 (25%), Positives = 46/106 (43%)
Query: 77 SASYEQALVD---ARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSET-R 132
S+S E L D A + + + I EKE+ KE L + D +E+ ++ET +
Sbjct: 259 SSSSENLLQDKAEAEEKVSADASVQDIAEKESLDA--DKE-LATNDQEDDEEENQAETQK 315
Query: 133 DWL--NNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSIT 176
D NN + E Q + A +T T+P + + T ++
Sbjct: 316 DGAISNNENMQSEVQTTNPSASTSAVT---NITKPTLIQNPSTPLS 358
>ASPGD|ASPL0000074489 [details] [associations]
symbol:AN4585 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0006355 EMBL:BN001303 HOGENOM:HOG000184850
OMA:ESIYHLP EnsemblFungi:CADANIAT00005852 Uniprot:C8V7V5
Length = 616
Score = 519 (187.8 bits), Expect = 5.1e-88, Sum P(2) = 5.1e-88
Identities = 150/419 (35%), Positives = 220/419 (52%)
Query: 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIK 63
SRK Q EID+ KKV EG+ F+ I+ K+ N Q++K E +LK+EIKKLQRYRDQIK
Sbjct: 3 SRKTQQEIDKTFKKVAEGIQTFEGIYEKIRAATNPTQRDKLEENLKREIKKLQRYRDQIK 62
Query: 64 TWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDP 123
+W +E+KDK L++ R+ IE ME+FK EKE KTKA+SKEGL + DP
Sbjct: 63 SWASGNEVKDKG-------PLLEQRRAIETCMEQFKAVEKEMKTKAYSKEGLSAASRLDP 115
Query: 124 KEKAKSETRDWLNNLVSELESQIDSFEAELEGL--TVKKGK---TRPPRLTHLETSITRH 178
K+K K ET D+L+N+V EL+ +I++ EAE E L ++KKGK T+ RL L I RH
Sbjct: 116 KDKEKVETCDFLSNMVDELQQKIEAMEAEEESLQMSMKKGKKDVTKTNRLADLAHFIERH 175
Query: 179 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER-NQDDFEEFSDVDELYHLLPL-D 236
K H+ KLEL+LR L N + QV D+K+ ++ YVE NQ D+ + + LY L + D
Sbjct: 176 KWHVNKLELLLRSLQNGNIETSQVVDLKESIKYYVEDGNQIDYA--GEDETLYDDLNMGD 233
Query: 237 KVESLEDLVTIGPPGLVKATVISTHQQVTSVQE-QGEDTASQDSNSDVAARTP-PAKSSG 294
E+ + + T ++V + + + E +A+ ++P P ++
Sbjct: 234 DAEAQFGIGGDNDRVSSQDTQSMQDEEVEAKPKPKAEASATSHRRPSAQMKSPLPVLATL 293
Query: 295 VGSTASTPAVG--PATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSP--- 349
S++S+ A G PA P + +P +TL AS + + G+ P +SP
Sbjct: 294 HPSSSSSSASGMKPAPPPT-RLPGETLKYASAAAAAAASDKNGVGIAPLPPPPGASPAFP 352
Query: 350 ---PVNLTSSTKEEDVGNF-PGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXAT-AVPS 403
P + SST V P +++P+ V GR A+ VPS
Sbjct: 353 SAVPASKASSTASPVVTLAQPVPKATPAAAIVAEEGRSRTPAFSPKVSAAVSASNTVPS 411
Score = 389 (142.0 bits), Expect = 5.1e-88, Sum P(2) = 5.1e-88
Identities = 75/149 (50%), Positives = 98/149 (65%)
Query: 723 QMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 782
++L ++ P+P DSE+ R Y P++P TP YPQ I+ +P +E +D TDT
Sbjct: 478 RLLTASAANCPEPGDSEKPRHYKPQNPYNTPLYYPQEPLAILDDPRLYETGRID---TDT 534
Query: 783 LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFH 842
LF+ FYY+Q +YQQYLAAK LK QSWR+H++Y TWFQRHEEPK +EFEQGTY +FD+
Sbjct: 535 LFYLFYYRQGSYQQYLAAKALKGQSWRFHKQYQTWFQRHEEPKTITEEFEQGTYRFFDY- 593
Query: 843 IANDDLQHGWCQRIKTEFTFEYNYLEDEL 871
+ W R K +F F Y YLEDEL
Sbjct: 594 ------ESTWMNRRKADFKFIYKYLEDEL 616
Score = 54 (24.1 bits), Expect = 2.3e-34, Sum P(2) = 2.3e-34
Identities = 19/79 (24%), Positives = 31/79 (39%)
Query: 288 PPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS 347
P A + S+ ++P V A P+ PA + S S V + + S
Sbjct: 352 PSAVPASKASSTASPVVTLAQPVPKATPAAAIVAEEGRSRTPAFSPKVSAAVSASNTVPS 411
Query: 348 SPPVNL--TSSTKEEDVGN 364
+P ++ T+STK N
Sbjct: 412 TPAMDKAETASTKPPAAAN 430
Score = 47 (21.6 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 21/84 (25%), Positives = 27/84 (32%)
Query: 250 PGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATP 309
P + KA ST + GE + + PP + S T A P
Sbjct: 413 PAMDKAETASTKPPAAA---NGESNKENQAGEESIYHLPPGLQDLIHSFEVTKNRASANP 469
Query: 310 ISINVPAQTLSNASNTSPVLPGSS 333
S Q L AS + PG S
Sbjct: 470 SSQPPSVQRLLTASAANCPEPGDS 493
Score = 44 (20.5 bits), Expect = 2.5e-33, Sum P(2) = 2.5e-33
Identities = 19/84 (22%), Positives = 29/84 (34%)
Query: 283 VAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNT 342
V TP A + TPA P +++ ASNT P P
Sbjct: 374 VPKATPAAAIVAEEGRSRTPAFSPKVSAAVS--------ASNTVPSTPAMDKAETA-STK 424
Query: 343 GPISSSPPVNLTSSTKEEDVGNFP 366
P +++ N + EE + + P
Sbjct: 425 PPAAANGESNKENQAGEESIYHLP 448
>ZFIN|ZDB-GENE-030131-5838 [details] [associations]
symbol:cnot3b "CCR4-NOT transcription complex,
subunit 3b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-030131-5838 GO:GO:0005634 GO:GO:0006355
HOVERGEN:HBG051042 KO:K12580 EMBL:BC045499 IPI:IPI00859465
RefSeq:NP_956134.1 UniGene:Dr.6354 ProteinModelPortal:Q7ZVL4
STRING:Q7ZVL4 PRIDE:Q7ZVL4 GeneID:327627 KEGG:dre:327627 CTD:327627
InParanoid:Q7ZVL4 NextBio:20810115 ArrayExpress:Q7ZVL4 Bgee:Q7ZVL4
Uniprot:Q7ZVL4
Length = 908
Score = 636 (228.9 bits), Expect = 7.1e-88, Sum P(3) = 7.1e-88
Identities = 162/394 (41%), Positives = 227/394 (57%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+E+DLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVTEGVEQFEDIWKKLHNAANANQKEKYESDLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ LV+ RKLIE +MERFKI E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--E 228
RH+ HI LE ILR+LDND + + + +KD +E Y++ +QD DFEE + D+D E
Sbjct: 174 ERHRFHIRMLETILRMLDNDSIQVDSIRKIKDDVEYYLDSSQDPDFEENEFLYDDLDLEE 233
Query: 229 L-YHLLPLDKVESLEDLV----TIGPPGLVKATVI--STHQQVTSVQEQ---GEDTASQD 278
+ ++P +D + + P ++ I S T+ +++ G T S+
Sbjct: 234 IPLPVVPTSPAGHPDDEIFQHSSSTPTSTTSSSPIPPSPATCTTNSEDEKKRGHSTDSEI 293
Query: 279 SNSDVA-ARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRG 337
S S + + SS ++S+ + IS+ A + S+AS +S +L G+ SV
Sbjct: 294 SQSPIKNGNQSSSLSSSSSLSSSSSGASSISLISMATLASSGSSASGSSSLL-GNISVP- 351
Query: 338 VFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSS 371
N+G SS+ S ++ N S+
Sbjct: 352 -LQNSGSYSSATQQQTQQSQQQHQPKNSASSHSN 384
Score = 235 (87.8 bits), Expect = 7.1e-88, Sum P(3) = 7.1e-88
Identities = 48/95 (50%), Positives = 61/95 (64%)
Query: 717 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 776
DQ+Y M ESA+ +P P DSER R Y+ R+P T P + Q+ P + F++RLS
Sbjct: 742 DQLYQQAMQESAWAHMPHPSDSERIRQYLMRNPCPTLPFHHQMPPPHSDSVEFYQRLS-- 799
Query: 777 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH 811
T+TLFF FYY + T QYLAAK LKKQSWR+H
Sbjct: 800 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFH 831
Score = 88 (36.0 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 55/238 (23%), Positives = 96/238 (40%)
Query: 259 STHQQVTSVQEQGE--DTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPA 316
+T QQ Q+Q + ++AS SNS A+ + +S S +T +GP TP S +
Sbjct: 361 ATQQQTQQSQQQHQPKNSASSHSNSTSASNSILLPTSASTSPPNTSTLGPLTPSSQSQTN 420
Query: 317 QTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD 376
+S +S+ + G+S++ G + S P +L+ G+ P + +
Sbjct: 421 LGMSLSSSLG-LGKGTSALTGTNQMPSLVLSGMPASLSGFLS----GSTPAPYAQAAAAG 475
Query: 377 VRVMGRGGXXXXXXXXXXXXXA-TAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQ 435
G T++ +NG+LG+ L+ + ILG LGS+
Sbjct: 476 CVGSGLSSAIGTNISSTNSSGVVTSLGTNGSLGSTSLLGSGS--GILG----LGSTFAAV 529
Query: 436 SLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMA---GRVFTPSMGMQWRTGNSF 490
+ L+ + S G++ G I S+ A A G P G + G+S+
Sbjct: 530 EPLPLLAPSPVGSTLTSGSN-VGVIGSSGGTSGTANATGSGTQPRPPSGPKQNGGSSY 586
Score = 67 (28.6 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 36/153 (23%), Positives = 55/153 (35%)
Query: 439 SPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNE-PG 497
S LS+ LS ++ G I T+A +G + S + QN
Sbjct: 305 SSLSSSSSLSSSSSGASSISLISM----ATLASSGSSASGSSSLLGNISVPLQNSGSYSS 360
Query: 498 QFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQ--FSSQQNPLLQQFNSQ-- 553
+ +T+ + Q + SN + +P + +S PL SQ
Sbjct: 361 ATQQQTQQSQQQHQPKNSASSHSNSTSASNSILLPTSASTSPPNTSTLGPLTPSSQSQTN 420
Query: 554 -GSSISAQAGLGLGVQA-PGMNSVTSASLQQQP 584
G S+S+ GLG G A G N + S L P
Sbjct: 421 LGMSLSSSLGLGKGTSALTGTNQMPSLVLSGMP 453
Score = 53 (23.7 bits), Expect = 4.5e-16, Sum P(2) = 4.5e-16
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 552 SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQ 594
S GSS S + L + P NS + +S QQ QQS QQ
Sbjct: 333 SSGSSASGSSSLLGNISVPLQNSGSYSSATQQQT---QQSQQQ 372
Score = 50 (22.7 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
Identities = 29/143 (20%), Positives = 60/143 (41%)
Query: 240 SLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTA 299
++E L + P + + +++ V + G + + ++ PP+ G ++
Sbjct: 528 AVEPLPLLAPSPV--GSTLTSGSNVGVIGSSGGTSGTANATGSGTQPRPPSGPKQNGGSS 585
Query: 300 STPAVGPATPIS-INVPAQTLSNASN------TSPVLPGSSSVRGVFDNTGPISSSPPVN 352
+ VG +T S +N +Q+ ++ S+ T+ ++ SS+ G P SS PV
Sbjct: 586 YSAVVGDSTSDSALNSASQSQNSQSSSLNLAVTNQLMDSGSSLLGSM-TLAP-SSPSPVY 643
Query: 353 LTSSTKEEDVGNFPGRRSSPSLT 375
S + N P + P+ T
Sbjct: 644 SESKAGGGSLLNGPHSYTQPADT 666
Score = 43 (20.2 bits), Expect = 7.1e-88, Sum P(3) = 7.1e-88
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 535 GNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQ-QQPNPIHQQS 591
G+ S N Q NSQ SS++ L G + + S +L P+P++ +S
Sbjct: 591 GDSTSDSALNSASQSQNSQSSSLNLAVTNQL--MDSGSSLLGSMTLAPSSPSPVYSES 646
>DICTYBASE|DDB_G0272056 [details] [associations]
symbol:DDB_G0272056 "putative CCR4-NOT complex
subunit 3" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR007207
InterPro:IPR007282 InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153
PIRSF:PIRSF005290 dictyBase:DDB_G0272056 GO:GO:0005634
GO:GO:0006355 EMBL:AAFI02000007 eggNOG:COG5665 KO:K12580
RefSeq:XP_645358.1 ProteinModelPortal:Q55AA8
EnsemblProtists:DDB0219997 GeneID:8618247 KEGG:ddi:DDB_G0272056
InParanoid:Q55AA8 OMA:GHIKSEE Uniprot:Q55AA8
Length = 866
Score = 481 (174.4 bits), Expect = 1.6e-85, Sum P(3) = 1.6e-85
Identities = 129/385 (33%), Positives = 208/385 (54%)
Query: 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIK 63
+RKLQGEID+ LKKV +G+ FD + KVY + NQKEK+E+DLKKEIKKLQRYRDQIK
Sbjct: 3 TRKLQGEIDKTLKKVADGIIEFDCVLKKVYSAISTNQKEKYESDLKKEIKKLQRYRDQIK 62
Query: 64 TWIQSSEIKDKKV----SASYEQALVDARKLIEREMERFKICEK-ETKTKAFSKEGLGQQ 118
WI S+++K+K S E L++ +K ++M+ F+ E+ E K K +SK+G G
Sbjct: 63 AWIASNDVKNKAALLESRKSIEMILINFKKNKIKKMDSFRHLERGEGKGK-YSKDG-GVD 120
Query: 119 PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH 178
T E AK+ + W + ++ L +Q++SF+ ELE + V+K KT R+ L+ H
Sbjct: 121 SSTKD-EMAKTHVKTWASKAIATLRAQLESFDTELENIPVRKRKTESARVEQLQKFKNNH 179
Query: 179 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER--NQDDFEEFSDVDELYHLLP-- 234
K H++ LE +LR++D+D + +++ +KD +E Y++ +D +EE ++ +++ P
Sbjct: 180 KYHLLALEFLLRMMDDDRIPTDEIEKIKDSVECYIDSYTQEDTYEEPGEIYSIFNFKPHN 239
Query: 235 LDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQ-DSNS---DVAARTPPA 290
+ +E ED + + + ++++S+ DSNS D TP
Sbjct: 240 ITDIED-EDFDFSLDEESDDDDDDDDYSDASDHDDDDDESSSKKDSNSENEDEIKETPKV 298
Query: 291 KSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPP 350
++ TA+ A PI I+ Q N SP+L +++ R G S +P
Sbjct: 299 ATA----TATATAEKSTQPI-ISTSIQQQLPQPNKSPILQPNNTAR-----IG--SPTPT 346
Query: 351 VNLTSSTKEEDVGNFPGRRSSPSLT 375
NL+ T+ P + S+PS T
Sbjct: 347 TNLSQQTQ-------PTKASTPSPT 364
Score = 431 (156.8 bits), Expect = 1.6e-85, Sum P(3) = 1.6e-85
Identities = 83/157 (52%), Positives = 104/157 (66%)
Query: 714 GMHDQMY-NMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER 772
G + M M++ +F LP KD ER ++IPR+P P YPQ P+ +P +E+
Sbjct: 722 GFEEAMILTRHMMDISFKNLPDFKDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNVFEK 781
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFE 832
+D TLFF FY++Q TYQQY AAKELKKQ WRYH+KY TWF+RHEEPK +EFE
Sbjct: 782 FDID-----TLFFIFYFKQGTYQQYQAAKELKKQGWRYHKKYLTWFRRHEEPKEITNEFE 836
Query: 833 QGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
QGTYVYFD+ + GWCQR KTEFTFEY +LE+
Sbjct: 837 QGTYVYFDY-------ETGWCQRKKTEFTFEYRFLEE 866
Score = 77 (32.2 bits), Expect = 2.0e-42, Sum P(3) = 2.0e-42
Identities = 37/172 (21%), Positives = 70/172 (40%)
Query: 199 PEQVNDVKDLLEDY-VERNQDDFEEFSDV-DELYHLLPLDKVESLEDLVTIGPPGLVKAT 256
P + D++D D+ ++ DD ++ D D H D+ S +D + + +
Sbjct: 237 PHNITDIEDEDFDFSLDEESDDDDDDDDYSDASDHDDDDDESSSKKDSNSENEDEIKETP 296
Query: 257 VISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPA 316
++T + ++ + S + + + P S + +T +G TP + N+
Sbjct: 297 KVATATATATAEKSTQPIIS----TSIQQQLPQPNKSPILQPNNTARIGSPTPTT-NLSQ 351
Query: 317 QTL-SNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKE-EDVGNFP 366
QT + AS SP SS + N S S P +T ++ +GN P
Sbjct: 352 QTQPTKASTPSPTF--SSVTKTSIKNDNKQSHSQPTPVTIPNQQFPSLGNVP 401
Score = 61 (26.5 bits), Expect = 1.6e-85, Sum P(3) = 1.6e-85
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 536 NKQFSSQQN-PLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQ 594
N+QF S N P+ Q+ Q + A A L Q QQQ QQ QQ
Sbjct: 391 NQQFPSLGNVPMAQRLMQQQAQQQAAAAAQLAAQQAQTQQTQQQQQQQQQQQQQQQQQQQ 450
Score = 59 (25.8 bits), Expect = 1.8e-38, Sum P(3) = 1.8e-38
Identities = 24/141 (17%), Positives = 65/141 (46%)
Query: 39 NQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF 98
NQ+++ ++ ++ Q+ Q K S+I D V S Q + ++ ++ ++
Sbjct: 457 NQQQQAPPQQQQAPQQQQQQNTQFKNKTGQSDIND--VQDSLSQLNIKQQQQPPQQPQQQ 514
Query: 99 KICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV 158
+ +++ + + ++ QQP+ D + +ET D +NL ++I + +G
Sbjct: 515 Q--QQQQQQQQQQQQQQQQQPQADLDDSKNNETFDNSSNLYPGTLAEISTISRINDGTYQ 572
Query: 159 KKGKTRPPRLTHLETSITRHK 179
++ + + + +H ++ H+
Sbjct: 573 QQHQQQQQQQSHQQSHQQSHQ 593
Score = 49 (22.3 bits), Expect = 2.9e-84, Sum P(3) = 2.9e-84
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 581 QQQPNPIHQQSSQQTLMSGGQKDADVSH 608
QQQ HQQS QQ+ Q+ H
Sbjct: 577 QQQQQQSHQQSHQQSHQQSQQQSQQSQH 604
Score = 47 (21.6 bits), Expect = 2.6e-45, Sum P(3) = 2.6e-45
Identities = 18/98 (18%), Positives = 40/98 (40%)
Query: 733 PQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQN 792
PQP+ + + P P PQ Q P + + Y+QQ
Sbjct: 616 PQPQPQPQPQPQPQPQPQPQPQPQPQQQQPQHQSQQHQPQPQQPQQPQQPQHQP-YHQQQ 674
Query: 793 TYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDE 830
+YQQ + ++Q +Y ++ Q++++ +++ ++
Sbjct: 675 SYQQ-----QQQQQQQQYQQQQQQQQQQYQQQQMSQNQ 707
Score = 45 (20.9 bits), Expect = 7.7e-84, Sum P(3) = 7.7e-84
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 542 QQNPLLQQF-NSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQ 594
QQ P QQ N+Q + + Q+ + VQ +S++ +++QQ P Q QQ
Sbjct: 467 QQAPQQQQQQNTQFKNKTGQSDIN-DVQ----DSLSQLNIKQQQQPPQQPQQQQ 515
Score = 41 (19.5 bits), Expect = 2.0e-83, Sum P(3) = 2.0e-83
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 579 SLQQQPNPIHQQSSQQTLMS 598
S QQ HQQS QQ+ S
Sbjct: 583 SHQQSHQQSHQQSQQQSQQS 602
Score = 40 (19.1 bits), Expect = 2.6e-83, Sum P(3) = 2.6e-83
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 581 QQQPNPIHQQSSQQTLMSGGQKDADVSHLK 610
QQQ QQ QQ Q AD+ K
Sbjct: 512 QQQQQQQQQQQQQQQQQQQQQPQADLDDSK 541
Score = 39 (18.8 bits), Expect = 3.3e-83, Sum P(3) = 3.3e-83
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 581 QQQPNPIHQQSSQQ 594
Q Q P HQQ S Q
Sbjct: 664 QPQHQPYHQQQSYQ 677
Score = 39 (18.8 bits), Expect = 3.3e-83, Sum P(3) = 3.3e-83
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 569 APGMNSVTSASLQQQPNPIHQQSSQQTL 596
+P +SVT S++ H Q + T+
Sbjct: 362 SPTFSSVTKTSIKNDNKQSHSQPTPVTI 389
Score = 39 (18.8 bits), Expect = 3.4e-42, Sum P(2) = 3.4e-42
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 748 HPAVTPPSYPQVQAPIVSNPAFWERL 773
H TP + P Q P + N +RL
Sbjct: 381 HSQPTPVTIPNQQFPSLGNVPMAQRL 406
>UNIPROTKB|F1RNH3 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580 OMA:IFYYLEP
GeneTree:ENSGT00390000014743 EMBL:FP476135 RefSeq:XP_003356092.1
Ensembl:ENSSSCT00000003625 GeneID:100520963 KEGG:ssc:100520963
Uniprot:F1RNH3
Length = 719
Score = 643 (231.4 bits), Expect = 1.7e-82, Sum P(3) = 1.7e-82
Identities = 165/400 (41%), Positives = 220/400 (55%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--E 228
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + D+D +
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLED 233
Query: 229 LYHLLPLDKVES---LEDLVTIGPPGLVKATVISTH---QQVTSVQEQGEDTASQDSNSD 282
+ L S +ED + +T S+ E ED + ++D
Sbjct: 234 IPQALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTD 293
Query: 283 VAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGV 338
PAK S V S +PAV P+ P P T S A +T+P G+ +
Sbjct: 294 SEVSQSPAKNGSKPVHSNQHPQSPAVPPSYPSG---PPPTAS-ALSTTPGNNGAPAPAAP 349
Query: 339 FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR 378
GP +S P + + + P S PS R
Sbjct: 350 ASALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTAQPR 389
Score = 169 (64.5 bits), Expect = 1.7e-82, Sum P(3) = 1.7e-82
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 717 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 776
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 611 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 668
Query: 777 SYGTDTLFFAFYY 789
T+TLFF FYY
Sbjct: 669 ---TETLFFIFYY 678
Score = 76 (31.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 30/88 (34%), Positives = 40/88 (45%)
Query: 279 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPG 331
S S V A +P A SS G+T S+ A+GP + N P T S +P V PG
Sbjct: 429 SYSSVVADSPAEVALSSSGGNTTSSQALGPPSGPH-NPPPSTSKEPSAAAPTGAGGVAPG 487
Query: 332 SSSVRGVFDNTGPISSSPPVNLTSSTKE 359
S + G P+ +PP + T S E
Sbjct: 488 SGNNSGGPSLLVPLPVNPPSSPTPSFSE 515
Score = 47 (21.6 bits), Expect = 1.7e-82, Sum P(3) = 1.7e-82
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 534 GGNKQFSSQQNPLLQQFN---SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQ 590
GGN S P N S SA A G G APG + + P P++
Sbjct: 447 GGNTTSSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPP 506
Query: 591 SS 592
SS
Sbjct: 507 SS 508
Score = 47 (21.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 15/71 (21%), Positives = 26/71 (36%)
Query: 248 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA 307
GPP A I + ++S++ E A D + + S+ S P
Sbjct: 525 GPPQFSAAPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQ 584
Query: 308 TPIS---INVP 315
P+ +N+P
Sbjct: 585 PPLQLSEVNIP 595
Score = 45 (20.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 15/59 (25%), Positives = 21/59 (35%)
Query: 255 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 313
+ V + +V G T+SQ PP +S S A+ G P S N
Sbjct: 432 SVVADSPAEVALSSSGGNTTSSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGN 490
Score = 40 (19.1 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 746 PRHPAVTPPSYPQVQAP 762
P H + TP Y Q AP
Sbjct: 361 PSHNSGTPAPYAQAVAP 377
>WB|WBGene00003826 [details] [associations]
symbol:ntl-3 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 474 (171.9 bits), Expect = 6.1e-73, Sum P(2) = 6.1e-73
Identities = 133/359 (37%), Positives = 194/359 (54%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKL EID+ KK+ EGV++F+ K+++ ++ NQ++K++ DLKKEIKKLQR RD
Sbjct: 1 MAEKRKLLAEIDKCFKKIDEGVELFEETMEKMHEANSDNQRDKYQDDLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
Q+K W +SEIKDK SY RKLIE+ ME+FK E+E KTK SK GL + K
Sbjct: 61 QVKNWQNASEIKDKDKLNSY-------RKLIEQRMEQFKDVERENKTKPHSKLGLSAEEK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV------KKGKT--------RPP 166
DPKEK K+ET DW+ + + L ++D E +LE L+ K+GK R
Sbjct: 114 LDPKEKEKAETMDWIQHQIRSLNEEVDRTEMQLESLSNTDTGKGKRGKKEDAKTKNEREK 173
Query: 167 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVND-VKDLLEDYVER-NQDDFEEFS 224
R+ L+ + R HI KLE+ +R++ N+ L+ + V + +K+ +E YVE N++D EE
Sbjct: 174 RVEGLKHHLERINFHIEKLEICMRMISNESLNAKMVLETLKEPIETYVEMMNEEDSEEAD 233
Query: 225 --DVDELYHLLPLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSD 282
D D+ Y L L+K+ IG G+ A+V H++ + E G DTA + S
Sbjct: 234 NYDPDDAYDELNLEKL-----CQQIG--GVNVASVDDEHRE--NGHELGIDTAESGAVSG 284
Query: 283 VAART-----PPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASN--TSPVLPGSSS 334
+ PP+ + S P+ TP + A SN T PV P S++
Sbjct: 285 SRHTSGENGQPPSPAGRRIVPLSMPSPHAVTP-ELKRLASKDSNVDRPRTPPVTPASAA 342
Score = 328 (120.5 bits), Expect = 6.1e-73, Sum P(2) = 6.1e-73
Identities = 74/147 (50%), Positives = 88/147 (59%)
Query: 725 LESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPA-FWERLSLDSYGTDTL 783
LE A K P DSE+ R+Y+ + P Y Q AP S+ ++ RL+ DTL
Sbjct: 566 LELACAKATFPLDSEKPRNYLSKVSFPVPSWYGQT-APNTSDSLEYYLRLA-----PDTL 619
Query: 784 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHI 843
FF FYY + T Q LAAK LKK SWR+H KY TWFQRHEEPK D++EQGTYVYFDF
Sbjct: 620 FFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQITDDYEQGTYVYFDFE- 678
Query: 844 ANDDLQHGWCQRIKTEFTFEYNYLEDE 870
W QR K FTFEY +LED+
Sbjct: 679 -------KWSQRKKESFTFEYKFLEDK 698
Score = 78 (32.5 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 33/102 (32%), Positives = 47/102 (46%)
Query: 275 ASQDSNSDVAARTPPA--------------KSSGVGSTASTPAVGPATPISINVPAQTLS 320
AS+DSN D RTPP S G + +TP P+TPIS N PA +L+
Sbjct: 322 ASKDSNVD-RPRTPPVTPASAAPPPPGIPYNSVAAGRSTTTPV--PSTPISANSPAPSLA 378
Query: 321 NASN---TSPVLPGSSSVRGVFDNTGPISSSPPV--NLTSST 357
A+ SPV P +++ +S P ++TS+T
Sbjct: 379 QAAPIAAASPVFPPAAAAASKPVLAQSVSEMPQKKESITSTT 420
Score = 45 (20.9 bits), Expect = 6.6e-26, Sum P(2) = 6.6e-26
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 249 PPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGP 306
PP A+ Q V+ + ++ E S S AA ++ +T+S PA P
Sbjct: 391 PPAAAAASKPVLAQSVSEMPQKKESITSTTSRGSAAAPATTTTTTTT-TTSSEPAEVP 447
Score = 44 (20.5 bits), Expect = 8.4e-26, Sum P(2) = 8.4e-26
Identities = 25/113 (22%), Positives = 43/113 (38%)
Query: 250 PGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATP 309
P L +A I+ + V AS+ + + P K S +T+ A PAT
Sbjct: 375 PSLAQAAPIAA---ASPVFPPAAAAASKPVLAQSVSEMPQKKESITSTTSRGSAAAPAT- 430
Query: 310 ISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDV 362
+ T S+ P++ +V F N G S + LT +++ +
Sbjct: 431 -TTTTTTTTTSSEPAEVPLVV-QQTVSETFVN-GVDSPAAATRLTQQERQQQL 480
Score = 37 (18.1 bits), Expect = 2.6e-42, Sum P(2) = 2.6e-42
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 736 KDSERARSYIPRHPAVTPPS 755
KDS R PR P VTP S
Sbjct: 324 KDSNVDR---PRTPPVTPAS 340
>UNIPROTKB|G5EFX8 [details] [associations]
symbol:ntl-3 "Protein NTL-3, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 474 (171.9 bits), Expect = 6.1e-73, Sum P(2) = 6.1e-73
Identities = 133/359 (37%), Positives = 194/359 (54%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKL EID+ KK+ EGV++F+ K+++ ++ NQ++K++ DLKKEIKKLQR RD
Sbjct: 1 MAEKRKLLAEIDKCFKKIDEGVELFEETMEKMHEANSDNQRDKYQDDLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
Q+K W +SEIKDK SY RKLIE+ ME+FK E+E KTK SK GL + K
Sbjct: 61 QVKNWQNASEIKDKDKLNSY-------RKLIEQRMEQFKDVERENKTKPHSKLGLSAEEK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV------KKGKT--------RPP 166
DPKEK K+ET DW+ + + L ++D E +LE L+ K+GK R
Sbjct: 114 LDPKEKEKAETMDWIQHQIRSLNEEVDRTEMQLESLSNTDTGKGKRGKKEDAKTKNEREK 173
Query: 167 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVND-VKDLLEDYVER-NQDDFEEFS 224
R+ L+ + R HI KLE+ +R++ N+ L+ + V + +K+ +E YVE N++D EE
Sbjct: 174 RVEGLKHHLERINFHIEKLEICMRMISNESLNAKMVLETLKEPIETYVEMMNEEDSEEAD 233
Query: 225 --DVDELYHLLPLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSD 282
D D+ Y L L+K+ IG G+ A+V H++ + E G DTA + S
Sbjct: 234 NYDPDDAYDELNLEKL-----CQQIG--GVNVASVDDEHRE--NGHELGIDTAESGAVSG 284
Query: 283 VAART-----PPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASN--TSPVLPGSSS 334
+ PP+ + S P+ TP + A SN T PV P S++
Sbjct: 285 SRHTSGENGQPPSPAGRRIVPLSMPSPHAVTP-ELKRLASKDSNVDRPRTPPVTPASAA 342
Score = 328 (120.5 bits), Expect = 6.1e-73, Sum P(2) = 6.1e-73
Identities = 74/147 (50%), Positives = 88/147 (59%)
Query: 725 LESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPA-FWERLSLDSYGTDTL 783
LE A K P DSE+ R+Y+ + P Y Q AP S+ ++ RL+ DTL
Sbjct: 566 LELACAKATFPLDSEKPRNYLSKVSFPVPSWYGQT-APNTSDSLEYYLRLA-----PDTL 619
Query: 784 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHI 843
FF FYY + T Q LAAK LKK SWR+H KY TWFQRHEEPK D++EQGTYVYFDF
Sbjct: 620 FFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQITDDYEQGTYVYFDFE- 678
Query: 844 ANDDLQHGWCQRIKTEFTFEYNYLEDE 870
W QR K FTFEY +LED+
Sbjct: 679 -------KWSQRKKESFTFEYKFLEDK 698
Score = 78 (32.5 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 33/102 (32%), Positives = 47/102 (46%)
Query: 275 ASQDSNSDVAARTPPA--------------KSSGVGSTASTPAVGPATPISINVPAQTLS 320
AS+DSN D RTPP S G + +TP P+TPIS N PA +L+
Sbjct: 322 ASKDSNVD-RPRTPPVTPASAAPPPPGIPYNSVAAGRSTTTPV--PSTPISANSPAPSLA 378
Query: 321 NASN---TSPVLPGSSSVRGVFDNTGPISSSPPV--NLTSST 357
A+ SPV P +++ +S P ++TS+T
Sbjct: 379 QAAPIAAASPVFPPAAAAASKPVLAQSVSEMPQKKESITSTT 420
Score = 45 (20.9 bits), Expect = 6.6e-26, Sum P(2) = 6.6e-26
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 249 PPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGP 306
PP A+ Q V+ + ++ E S S AA ++ +T+S PA P
Sbjct: 391 PPAAAAASKPVLAQSVSEMPQKKESITSTTSRGSAAAPATTTTTTTT-TTSSEPAEVP 447
Score = 44 (20.5 bits), Expect = 8.4e-26, Sum P(2) = 8.4e-26
Identities = 25/113 (22%), Positives = 43/113 (38%)
Query: 250 PGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATP 309
P L +A I+ + V AS+ + + P K S +T+ A PAT
Sbjct: 375 PSLAQAAPIAA---ASPVFPPAAAAASKPVLAQSVSEMPQKKESITSTTSRGSAAAPAT- 430
Query: 310 ISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDV 362
+ T S+ P++ +V F N G S + LT +++ +
Sbjct: 431 -TTTTTTTTTSSEPAEVPLVV-QQTVSETFVN-GVDSPAAATRLTQQERQQQL 480
Score = 37 (18.1 bits), Expect = 2.6e-42, Sum P(2) = 2.6e-42
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 736 KDSERARSYIPRHPAVTPPS 755
KDS R PR P VTP S
Sbjct: 324 KDSNVDR---PRTPPVTPAS 340
>CGD|CAL0002492 [details] [associations]
symbol:NOT5 species:5476 "Candida albicans" [GO:0030445
"yeast-form cell wall" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0016337 "cell-cell adhesion" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030015 "CCR4-NOT core
complex" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 CGD:CAL0002492
GO:GO:0005634 GO:GO:0030445 GO:GO:0071216 GO:GO:0036180
GO:GO:0009405 GO:GO:0006355 GO:GO:0016337 EMBL:AACQ01000053
EMBL:AACQ01000052 KO:K12580 RefSeq:XP_717570.1 RefSeq:XP_717644.1
STRING:Q5A755 GeneID:3640763 GeneID:3640828 KEGG:cal:CaO19.12573
KEGG:cal:CaO19.5107 Uniprot:Q5A755
Length = 662
Score = 473 (171.6 bits), Expect = 2.5e-53, Sum P(2) = 2.5e-53
Identities = 128/373 (34%), Positives = 202/373 (54%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62
++RKLQ E D++ KK+ EG+ FD I +K+ T++A+Q+EK E DLKKE+KKLQR RDQ+
Sbjct: 2 SARKLQQEFDKLNKKISEGLQAFDEIKDKINATESASQREKLENDLKKELKKLQRSRDQL 61
Query: 63 KTWIQSSEIK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGL---GQQ 118
K W+ S IK DK V L + R IE M++FK EK +K K FS EGL QQ
Sbjct: 62 KQWLGDSSIKLDKNV-------LQENRTKIEHAMDQFKELEKSSKIKQFSNEGLELQSQQ 114
Query: 119 PKTDPKEKAK-SETRDWLNNLVSELESQIDSFEAELEGLTV----KKGKTRPPRLTHLET 173
++ + AK E ++N ++ +L Q + E EL+ L+ K G + + ++
Sbjct: 115 KRSRFGDDAKYQEACTYINEVIEQLNGQNEELEQELDSLSGQSKRKGGSSIQSSIDDVKY 174
Query: 174 SITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLL 233
I R+ +HI KLE +L LDND+L P +++D+KD L+ YVE NQD E++ + DE Y L
Sbjct: 175 KIERNNSHISKLEEVLENLDNDKLDPARIDDIKDDLDYYVENNQD--EDYVEYDEFYDQL 232
Query: 234 PLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSS 293
+D+ + +E V+ ++ + + + E+ ++ + + PP SS
Sbjct: 233 EVDEEDDVE----------VQGSLAQMAAETEDERRRDEERKREEKEKEKQQQNPPRTSS 282
Query: 294 GVGSTASTPA--VG----PATPISINV-PAQTLSNASNTSPVLPGSSS--VRGVFDNTGP 344
V S++S+ +G PAT I +V + + +N S S+S V+ + P
Sbjct: 283 SVSSSSSSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKLKPTLAP 342
Query: 345 ISSSPPVNLTSST 357
+ PP+ TS T
Sbjct: 343 APAPPPI--TSGT 353
Score = 134 (52.2 bits), Expect = 2.5e-53, Sum P(2) = 2.5e-53
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 724 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS-NPAFWERLSLDSYGTDT 782
+LE++ P D+E+ R Y P + V P S Q P+ N + + + + DT
Sbjct: 493 LLETSLLNCPDSYDAEKPRQYNPVN--VHPSSIDYPQEPMYELNSSHY----MKKFDNDT 546
Query: 783 LFFAFYYQQ--NTYQQYLAAKELKKQSWRYHRKYNTWFQR 820
LFF FYY ++ +Y AAKEL ++ W ++ +++ WF +
Sbjct: 547 LFFCFYYGDGIDSISKYNAAKELSRRGWVFNTEFSQWFSK 586
Score = 62 (26.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 31/139 (22%), Positives = 54/139 (38%)
Query: 344 PISSSPPVNLTSSTKEEDVGNF--PGRRSSPSLTDVRVMG-RGGXXXXXXXXXXXXXATA 400
P +S V+ +SS+ + ++GN P + PS+ V +G +
Sbjct: 277 PPRTSSSVSSSSSSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKL 336
Query: 401 VPSNGNLGAVP-LVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGS 459
P+ A P + S + N + A + +S S ++ +N + KGN
Sbjct: 337 KPTLAPAPAPPPITSGTSYSNAIKAAQTASTSSTSNSSIAHTANDN--NNTNKGNRSVSP 394
Query: 460 IDSNNAGETVAMAGRVFTP 478
+ S + T A A V TP
Sbjct: 395 LASTD-NHTHAPAA-VSTP 411
Score = 54 (24.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 74/349 (21%), Positives = 144/349 (41%)
Query: 48 LKKEIKKLQRYRDQIKTWIQS-SEIKDKKVSASYEQALVDARKLIEREMERFKICEKETK 106
L++E KL + +I +Q+ EIKDK ++A+ E A R+ +E +++ K +K +
Sbjct: 6 LQQEFDKLNK---KISEGLQAFDEIKDK-INAT-ESA--SQREKLENDLK--KELKKLQR 56
Query: 107 TKAFSKEGLGQQP-KTDPKEKAKSETR-DWLNNLVSELE--SQIDSFEAELEGLTVKKGK 162
++ K+ LG K D ++ T+ + + ELE S+I F E L ++ +
Sbjct: 57 SRDQLKQWLGDSSIKLDKNVLQENRTKIEHAMDQFKELEKSSKIKQFSNEGLELQSQQKR 116
Query: 163 TR-------PPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLED--Y- 212
+R T++ I + +LE L L + + ++ ++D Y
Sbjct: 117 SRFGDDAKYQEACTYINEVIEQLNGQNEELEQELDSLSGQS-KRKGGSSIQSSIDDVKYK 175
Query: 213 VERNQDDFEEFSDVDELYHLLPLD--KVESLEDLVTIGPPGLVKATVISTHQQVTSVQ-E 269
+ERN + +V E LD +++ ++D + + + ++ +
Sbjct: 176 IERNNSHISKLEEVLENLDNDKLDPARIDDIKDDLDYYVENNQDEDYVEYDEFYDQLEVD 235
Query: 270 QGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVL 329
+ +D Q S + +AA T + N P +T S+ S++S
Sbjct: 236 EEDDVEVQGSLAQMAAETEDERRRDEERKREEKEKEKQQQ---N-PPRTSSSVSSSS--- 288
Query: 330 PGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR 378
SS+ + +NT P + P +T + + N SS S T V+
Sbjct: 289 --SSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTS-TPVK 334
Score = 46 (21.3 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 455 DGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNS 489
DG SI NA + ++ G VF QW + +S
Sbjct: 555 DGIDSISKYNAAKELSRRGWVFNTEFS-QWFSKDS 588
>UNIPROTKB|Q5A755 [details] [associations]
symbol:NOT5 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Not5p" species:237561 "Candida albicans SC5314"
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0016337 "cell-cell
adhesion" evidence=IMP] [GO:0030445 "yeast-form cell wall"
evidence=IDA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0071216 "cellular response to biotic stimulus"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
CGD:CAL0002492 GO:GO:0005634 GO:GO:0030445 GO:GO:0071216
GO:GO:0036180 GO:GO:0009405 GO:GO:0006355 GO:GO:0016337
EMBL:AACQ01000053 EMBL:AACQ01000052 KO:K12580 RefSeq:XP_717570.1
RefSeq:XP_717644.1 STRING:Q5A755 GeneID:3640763 GeneID:3640828
KEGG:cal:CaO19.12573 KEGG:cal:CaO19.5107 Uniprot:Q5A755
Length = 662
Score = 473 (171.6 bits), Expect = 2.5e-53, Sum P(2) = 2.5e-53
Identities = 128/373 (34%), Positives = 202/373 (54%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62
++RKLQ E D++ KK+ EG+ FD I +K+ T++A+Q+EK E DLKKE+KKLQR RDQ+
Sbjct: 2 SARKLQQEFDKLNKKISEGLQAFDEIKDKINATESASQREKLENDLKKELKKLQRSRDQL 61
Query: 63 KTWIQSSEIK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGL---GQQ 118
K W+ S IK DK V L + R IE M++FK EK +K K FS EGL QQ
Sbjct: 62 KQWLGDSSIKLDKNV-------LQENRTKIEHAMDQFKELEKSSKIKQFSNEGLELQSQQ 114
Query: 119 PKTDPKEKAK-SETRDWLNNLVSELESQIDSFEAELEGLTV----KKGKTRPPRLTHLET 173
++ + AK E ++N ++ +L Q + E EL+ L+ K G + + ++
Sbjct: 115 KRSRFGDDAKYQEACTYINEVIEQLNGQNEELEQELDSLSGQSKRKGGSSIQSSIDDVKY 174
Query: 174 SITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLL 233
I R+ +HI KLE +L LDND+L P +++D+KD L+ YVE NQD E++ + DE Y L
Sbjct: 175 KIERNNSHISKLEEVLENLDNDKLDPARIDDIKDDLDYYVENNQD--EDYVEYDEFYDQL 232
Query: 234 PLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSS 293
+D+ + +E V+ ++ + + + E+ ++ + + PP SS
Sbjct: 233 EVDEEDDVE----------VQGSLAQMAAETEDERRRDEERKREEKEKEKQQQNPPRTSS 282
Query: 294 GVGSTASTPA--VG----PATPISINV-PAQTLSNASNTSPVLPGSSS--VRGVFDNTGP 344
V S++S+ +G PAT I +V + + +N S S+S V+ + P
Sbjct: 283 SVSSSSSSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKLKPTLAP 342
Query: 345 ISSSPPVNLTSST 357
+ PP+ TS T
Sbjct: 343 APAPPPI--TSGT 353
Score = 134 (52.2 bits), Expect = 2.5e-53, Sum P(2) = 2.5e-53
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 724 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS-NPAFWERLSLDSYGTDT 782
+LE++ P D+E+ R Y P + V P S Q P+ N + + + + DT
Sbjct: 493 LLETSLLNCPDSYDAEKPRQYNPVN--VHPSSIDYPQEPMYELNSSHY----MKKFDNDT 546
Query: 783 LFFAFYYQQ--NTYQQYLAAKELKKQSWRYHRKYNTWFQR 820
LFF FYY ++ +Y AAKEL ++ W ++ +++ WF +
Sbjct: 547 LFFCFYYGDGIDSISKYNAAKELSRRGWVFNTEFSQWFSK 586
Score = 62 (26.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 31/139 (22%), Positives = 54/139 (38%)
Query: 344 PISSSPPVNLTSSTKEEDVGNF--PGRRSSPSLTDVRVMG-RGGXXXXXXXXXXXXXATA 400
P +S V+ +SS+ + ++GN P + PS+ V +G +
Sbjct: 277 PPRTSSSVSSSSSSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKL 336
Query: 401 VPSNGNLGAVP-LVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGS 459
P+ A P + S + N + A + +S S ++ +N + KGN
Sbjct: 337 KPTLAPAPAPPPITSGTSYSNAIKAAQTASTSSTSNSSIAHTANDN--NNTNKGNRSVSP 394
Query: 460 IDSNNAGETVAMAGRVFTP 478
+ S + T A A V TP
Sbjct: 395 LASTD-NHTHAPAA-VSTP 411
Score = 54 (24.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 74/349 (21%), Positives = 144/349 (41%)
Query: 48 LKKEIKKLQRYRDQIKTWIQS-SEIKDKKVSASYEQALVDARKLIEREMERFKICEKETK 106
L++E KL + +I +Q+ EIKDK ++A+ E A R+ +E +++ K +K +
Sbjct: 6 LQQEFDKLNK---KISEGLQAFDEIKDK-INAT-ESA--SQREKLENDLK--KELKKLQR 56
Query: 107 TKAFSKEGLGQQP-KTDPKEKAKSETR-DWLNNLVSELE--SQIDSFEAELEGLTVKKGK 162
++ K+ LG K D ++ T+ + + ELE S+I F E L ++ +
Sbjct: 57 SRDQLKQWLGDSSIKLDKNVLQENRTKIEHAMDQFKELEKSSKIKQFSNEGLELQSQQKR 116
Query: 163 TR-------PPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLED--Y- 212
+R T++ I + +LE L L + + ++ ++D Y
Sbjct: 117 SRFGDDAKYQEACTYINEVIEQLNGQNEELEQELDSLSGQS-KRKGGSSIQSSIDDVKYK 175
Query: 213 VERNQDDFEEFSDVDELYHLLPLD--KVESLEDLVTIGPPGLVKATVISTHQQVTSVQ-E 269
+ERN + +V E LD +++ ++D + + + ++ +
Sbjct: 176 IERNNSHISKLEEVLENLDNDKLDPARIDDIKDDLDYYVENNQDEDYVEYDEFYDQLEVD 235
Query: 270 QGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVL 329
+ +D Q S + +AA T + N P +T S+ S++S
Sbjct: 236 EEDDVEVQGSLAQMAAETEDERRRDEERKREEKEKEKQQQ---N-PPRTSSSVSSSS--- 288
Query: 330 PGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR 378
SS+ + +NT P + P +T + + N SS S T V+
Sbjct: 289 --SSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTS-TPVK 334
Score = 46 (21.3 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 455 DGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNS 489
DG SI NA + ++ G VF QW + +S
Sbjct: 555 DGIDSISKYNAAKELSRRGWVFNTEFS-QWFSKDS 588
>SGD|S000001300 [details] [associations]
symbol:NOT3 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IDA;IPI] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IMP] [GO:0016567 "protein ubiquitination"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
SGD:S000001300 GO:GO:0005634 GO:GO:0005737 EMBL:BK006942
GO:GO:0006351 GO:GO:0016567 EMBL:Z46861 GO:GO:0032968 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 KO:K12580 GeneTree:ENSGT00390000014743
KO:K10661 RefSeq:NP_012234.3 GeneID:854781 KEGG:sce:YIL030C
OrthoDB:EOG4NW2V3 EMBL:X04289 EMBL:AY692897 PIR:S49940
RefSeq:NP_012226.3 ProteinModelPortal:P06102 DIP:DIP-2256N
IntAct:P06102 MINT:MINT-426406 STRING:P06102 PaxDb:P06102
PeptideAtlas:P06102 EnsemblFungi:YIL038C GeneID:854773
KEGG:sce:YIL038C CYGD:YIL038c HOGENOM:HOG000113831 OMA:MEKYKAV
NextBio:977541 Genevestigator:P06102 GermOnline:YIL038C
Uniprot:P06102
Length = 836
Score = 441 (160.3 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 125/379 (32%), Positives = 201/379 (53%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYD-TDNANQKEKFEADLKKEIKKLQRYRDQ 61
A RKLQ E+DRV KK+ EG+++F+S + + T+N +QK+K E+DLK+E+KKLQR R+Q
Sbjct: 2 AHRKLQQEVDRVFKKINEGLEIFNSYYERHESCTNNPSQKDKLESDLKREVKKLQRLREQ 61
Query: 62 IKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT 121
IK+W S +IKDK +L+D R+ +E ME++K EK +K KA+S L +
Sbjct: 62 IKSWQSSPDIKDK-------DSLLDYRRSVEIAMEKYKAVEKASKEKAYSNISLKKSETL 114
Query: 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV--KKGKTRPPRLTHLETSITRHK 179
DP+E+ + + ++L+ ++ ELE Q DS + E++ L + KK KT + R +
Sbjct: 115 DPQERERRDISEYLSQMIDELERQYDSLQVEIDKLLLLNKKKKTSSTTNDEKKEQYKRFQ 174
Query: 180 A----HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPL 235
A H ++EL LRLL N+EL P+ V +V+D + +VE NQD +F + + +Y L L
Sbjct: 175 ARYRWHQQQMELALRLLANEELDPQDVKNVQDDINYFVESNQDP--DFVEDETIYDGLNL 232
Query: 236 DKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGV 295
E++ V A +T S+Q+ + + + + A+ AK +
Sbjct: 233 QSNEAIAHEVAQYFASQ-NAEDNNTSDANESLQDISKLSKKEQRKLEREAKKA-AKLAAK 290
Query: 296 GST-ASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLT 354
+T A+ P GP++ S +P S + SP SSS + + T P + ++
Sbjct: 291 NATGAAIPVAGPSSTPSPVIPVADASKETERSP----SSSP--IHNATKP-EEAVKTSIK 343
Query: 355 SSTKEEDVGNFPGRRSSPS 373
S D P + SPS
Sbjct: 344 SPRSSAD-NLLPSLQKSPS 361
Score = 95 (38.5 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 782 TLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDF 841
+LF+ +Y+ ++ +A K L ++ W+ + WF R E K N+ E G Y F
Sbjct: 707 SLFYNYYFAITPLEREIAYKILNERDWKVSKDGTMWFLRQGEVKFFNEICEVGDYKIFKL 766
Query: 842 HIANDDLQHGWCQRIKTEFTFEYNYLE 868
DD W K F +Y++L+
Sbjct: 767 ----DD----WTVIDKINFRLDYSFLQ 785
>SGD|S000006276 [details] [associations]
symbol:NOT5 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IPI] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0030015 "CCR4-NOT core complex" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA;IPI]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0016567 "protein
ubiquitination" evidence=IMP] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IDA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IMP]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 SGD:S000006276
GO:GO:0005634 GO:GO:0005737 GO:GO:0016567 EMBL:Z71255 EMBL:BK006949
GO:GO:0006368 EMBL:U51033 EMBL:Z49219 GO:GO:0032968 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850
GeneTree:ENSGT00390000014743 GO:GO:0031087 OrthoDB:EOG4NW2V3
EMBL:AY692887 PIR:S54093 RefSeq:NP_015397.1
ProteinModelPortal:Q12514 DIP:DIP-2257N IntAct:Q12514
MINT:MINT-420084 STRING:Q12514 PaxDb:Q12514 PeptideAtlas:Q12514
EnsemblFungi:YPR072W GeneID:856186 KEGG:sce:YPR072W CYGD:YPR072w
OMA:HPTSIFF NextBio:981366 Genevestigator:Q12514 GermOnline:YPR072W
Uniprot:Q12514
Length = 560
Score = 339 (124.4 bits), Expect = 4.5e-36, Sum P(2) = 4.5e-36
Identities = 82/212 (38%), Positives = 127/212 (59%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD--NANQKEKFEADLKKEIKKLQRYRD 60
+ RKLQ +ID++LKKV+EG++ FD I+ K TD N++ +EK E+DLK+EIKKLQ++RD
Sbjct: 2 SQRKLQQDIDKLLKKVKEGIEDFDDIYEKFQSTDPSNSSHREKLESDLKREIKKLQKHRD 61
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ ++KDK + L+ R+LIE MERFK EK KTK FSKE L P
Sbjct: 62 QIKTWLSKEDVKDK------QSVLMTNRRLIENGMERFKSVEKLMKTKQFSKEAL-TNPD 114
Query: 121 T--DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH 178
DPKE K + ++++ + EL+ Q++ +EA+ ++ + + +LE + +
Sbjct: 115 IIKDPKELKKRDQVLFIHDCLDELQKQLEQYEAQENEEQTERHEFH---IANLENILKKL 171
Query: 179 KAHIMKLELILRLLDNDELSPEQVNDVKDLLE 210
+ + M E + D+ + E ND D +E
Sbjct: 172 QNNEMDPEPVEEFQDDIKYYVEN-NDDPDFIE 202
Score = 202 (76.2 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 88/319 (27%), Positives = 143/319 (44%)
Query: 16 KKVQEGVD-VFDSIWNKVYDTDNANQK-EKFEADLKKEIKKLQR-YRDQIKTWIQS--SE 70
+K+Q+ +D + + + D D+ +K + + +KL+ + +IK +Q +
Sbjct: 4 RKLQQDIDKLLKKVKEGIEDFDDIYEKFQSTDPSNSSHREKLESDLKREIKK-LQKHRDQ 62
Query: 71 IK---DKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 127
IK K+ + L+ R+LIE MERFK EK KTK FSKE L P K+
Sbjct: 63 IKTWLSKEDVKDKQSVLMTNRRLIENGMERFKSVEKLMKTKQFSKEAL-TNPDII-KDPK 120
Query: 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLEL 187
+ + RD V + +D + +LE ++ E RH+ HI LE
Sbjct: 121 ELKKRDQ----VLFIHDCLDELQKQLEQYEAQEN----------EEQTERHEFHIANLEN 166
Query: 188 ILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTI 247
IL+ L N+E+ PE V + +D ++ YVE N D +F + D +Y + + S +
Sbjct: 167 ILKKLQNNEMDPEPVEEFQDDIKYYVENNDDP--DFIEYDTIYEDMGCEIQPSSSN--NE 222
Query: 248 GPPGLVKATVISTHQQVTSVQEQGEDTASQ-DSNSDVAARTP--PAKSSGVGSTASTPAV 304
P T +S+ + + + A Q D + A TP P S S +STP
Sbjct: 223 APKEGNNQTSLSSIRSSKKQERSPKKKAPQRDVSISDRATTPIAPGVESASQSISSTP-- 280
Query: 305 GPATPISINVPAQTLSNAS 323
TP+S + P T+ + S
Sbjct: 281 ---TPVSTDTPLHTVKDDS 296
Score = 123 (48.4 bits), Expect = 4.5e-36, Sum P(2) = 4.5e-36
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 778 YGTDTLFFAFYYQQNTYQQYLAAKEL-KKQSWRYHRKYNTWFQRH-EEPKVANDEFEQGT 835
+ DTLFF FY+ Q +Y+Q+LAA+EL K ++W +++ W+ + E+ + E+ +
Sbjct: 472 FDLDTLFFIFYHYQGSYEQFLAARELFKNRNWLFNKVDRCWYYKEIEKLPPGMGKSEEES 531
Query: 836 YVYFDF 841
+ YFD+
Sbjct: 532 WRYFDY 537
Score = 43 (20.2 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 804 KKQSWRYHRKYNTWFQRH-EEPKVANDE-FEQ 833
+++SWRY +W R V N+E FE+
Sbjct: 528 EEESWRYFDYKKSWLARRCGNDFVYNEEDFEK 559
>UNIPROTKB|H0Y5X7 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H0Y5X7 Ensembl:ENST00000457463 Uniprot:H0Y5X7
Length = 288
Score = 340 (124.7 bits), Expect = 3.6e-32, Sum P(2) = 3.6e-32
Identities = 64/117 (54%), Positives = 79/117 (67%)
Query: 717 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 776
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 142 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 199
Query: 777 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQ 833
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQ
Sbjct: 200 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQ 253
Score = 47 (21.6 bits), Expect = 3.6e-32, Sum P(2) = 3.6e-32
Identities = 15/71 (21%), Positives = 26/71 (36%)
Query: 248 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA 307
GPP A I + ++S++ E A D + + S+ S P
Sbjct: 56 GPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQ 115
Query: 308 TPIS---INVP 315
P+ +N+P
Sbjct: 116 PPLQLSEVNIP 126
Score = 41 (19.5 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 558 SAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSS 592
SA A G G APG + + P P++ SS
Sbjct: 5 SAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPPSS 39
Score = 37 (18.1 bits), Expect = 4.0e-31, Sum P(2) = 4.0e-31
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 530 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 570
G L G QFS+ + S S++ +A + G++ P
Sbjct: 51 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 91
>UNIPROTKB|H7C148 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 Pfam:PF04065 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C148 Ensembl:ENST00000440571 Uniprot:H7C148
Length = 375
Score = 345 (126.5 bits), Expect = 5.6e-32, Sum P(2) = 5.6e-32
Identities = 95/276 (34%), Positives = 140/276 (50%)
Query: 88 RKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQID 147
RKLIE +MERFK+ E+ETKTKA+SKEGLG K DP +K K E WL N + L Q+D
Sbjct: 2 RKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQWLTNTIDTLNMQVD 61
Query: 148 SFEAELEGLTV----KKGKT--RPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQ 201
FE+E+E L+V KKG + R+ L+ I +H+ H+ LE ILR+LDND + +
Sbjct: 62 QFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDA 121
Query: 202 VNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGL--VKATVI 258
+ +KD +E YV+ +QD DFEE + LY L L+ + + LV PP ++ +
Sbjct: 122 IRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDLEDIP--QALVATSPPSHSHMEDEIF 176
Query: 259 STHQQV-TSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTAS-TPAVGPATPISINV-P 315
+ TS S + + + + S S +PA + P+ N P
Sbjct: 177 NQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHP 236
Query: 316 AQTLSNASNTSPVLPGSSSVRGVFDNTG-PISSSPP 350
+ S P +S++ N G P ++PP
Sbjct: 237 QSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPP 272
Score = 194 (73.4 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 100/368 (27%), Positives = 151/368 (41%)
Query: 89 KLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDS 148
K++ERE + K KE A K Q+ K + + + T D LN V + ES+++S
Sbjct: 13 KVVERETKT-KAYSKEGLGLA-QKVDPAQKEKEEVGQWL-TNTIDTLNMQVDQFESEVES 69
Query: 149 FEAELEGLTVKKGKT--RPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVK 206
+ KKG + R+ L+ I +H+ H+ LE ILR+LDND + + + +K
Sbjct: 70 LSVQTRK---KKGDKDQKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDAIRKIK 126
Query: 207 DLLEDYVERNQD-DFEE----FSDVD--ELYHLLPLDKVES---LEDLVTIGPPGLVKAT 256
D +E YV+ +QD DFEE + D+D ++ L S +ED + +T
Sbjct: 127 DDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVATSPPSHSHMEDEIFNQSSSTPTST 186
Query: 257 VISTH---QQVTSVQEQGEDTASQDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATP 309
S+ E ED + ++D PAK S V S +PAV P P
Sbjct: 187 TSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYP 246
Query: 310 ISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRR 369
S PA ++A +T+P G + GP +S P + + + P
Sbjct: 247 -SGPPPA---ASALSTTPGNNGVPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAP 302
Query: 370 SSPSLTD-----VRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGA 424
S PS T V+ G GG ++A G S V + A
Sbjct: 303 SGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADS--PA 360
Query: 425 EERLGSSG 432
E L SSG
Sbjct: 361 EVALSSSG 368
Score = 40 (19.1 bits), Expect = 5.6e-32, Sum P(2) = 5.6e-32
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 746 PRHPAVTPPSYPQVQAP 762
P H + TP Y Q AP
Sbjct: 283 PSHNSGTPAPYAQAVAP 299
>UNIPROTKB|H7C3F5 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 Pfam:PF04065 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C3F5 Ensembl:ENST00000447684 Uniprot:H7C3F5
Length = 106
Score = 213 (80.0 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 40/75 (53%), Positives = 52/75 (69%)
Query: 90 LIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSF 149
LIE +MERFK+ E+ETKTKA+SKEGLG K DP +K K E WL N + L Q+D F
Sbjct: 2 LIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQWLTNTIDTLNMQVDQF 61
Query: 150 EAELEGLTVKKGKTR 164
E+E+E L+V+ K +
Sbjct: 62 ESEVESLSVQTRKKK 76
>UNIPROTKB|H7C5J4 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C5J4 Ensembl:ENST00000471126 Bgee:H7C5J4
Uniprot:H7C5J4
Length = 88
Score = 195 (73.7 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 45/83 (54%), Positives = 48/83 (57%)
Query: 796 QYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQ-GTYVYFDFHIANDDLQ----- 849
QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQ ++ A Q
Sbjct: 2 QYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQIPDHLLVHSLTAFSPGQGTYIY 61
Query: 850 ---HGWCQRIKTEFTFEYNYLED 869
W QR K FTFEY YLED
Sbjct: 62 FDYEKWGQRKKEGFTFEYRYLED 84
>CGD|CAL0005191 [details] [associations]
symbol:orf19.6075 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030015 "CCR4-NOT core complex" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA] [GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0051726 "regulation of cell
cycle" evidence=IEA] [GO:0000749 "response to pheromone involved in
conjugation with cellular fusion" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 CGD:CAL0005191 GO:GO:0005634
GO:GO:0006355 EMBL:AACQ01000036 EMBL:AACQ01000035 eggNOG:COG5601
HOGENOM:HOG000246523 KO:K12605 RefSeq:XP_718935.1
RefSeq:XP_719037.1 STRING:Q5AB95 GeneID:3639296 GeneID:3639453
KEGG:cal:CaO19.13496 KEGG:cal:CaO19.6075 Uniprot:Q5AB95
Length = 182
Score = 157 (60.3 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 775 LDSYGTDTLFFAFYYQ-QNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEF 831
+ ++ +TLF+ FY + ++T Q+Y AA+EL ++WRYH+ W + EP + N +
Sbjct: 95 IQNFTDETLFYIFYMKPRDTLQEY-AARELVARNWRYHKGIQVWLTKDSNVEPVLINPDV 153
Query: 832 EQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLE 868
E+G Y++FD H W ++IK EF Y+ ++
Sbjct: 154 EKGVYIFFD--------PHNW-EKIKKEFVLHYSLVQ 181
>SGD|S000002324 [details] [associations]
symbol:CDC36 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0051726 "regulation of cell cycle"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0031087 "deadenylation-independent decapping
of nuclear-transcribed mRNA" evidence=IMP] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA;IPI] [GO:0000749 "response to pheromone
involved in conjugation with cellular fusion" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IGI;IMP;IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IMP] [GO:0016567
"protein ubiquitination" evidence=IMP] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] InterPro:IPR007282 Pfam:PF04153 SGD:S000002324
GO:GO:0005634 GO:GO:0005737 EMBL:BK006938 GO:GO:0016567
GO:GO:0000122 GO:GO:0051726 GO:GO:0006368 EMBL:Z67750 GO:GO:0032968
GO:GO:0000289 GO:GO:0030015 eggNOG:COG5601 HOGENOM:HOG000246523
KO:K12605 GeneTree:ENSGT00390000001285 GO:GO:0031087 EMBL:X03246
EMBL:X68020 GO:GO:0000749 OrthoDB:EOG4TB7MJ EMBL:X04287 EMBL:Z74213
EMBL:AY557644 PIR:S12304 RefSeq:NP_010116.1
ProteinModelPortal:P06100 DIP:DIP-590N IntAct:P06100
MINT:MINT-400720 STRING:P06100 PaxDb:P06100 PeptideAtlas:P06100
EnsemblFungi:YDL165W GeneID:851389 KEGG:sce:YDL165W CYGD:YDL165w
OMA:WAETSRS NextBio:968543 Genevestigator:P06100 GermOnline:YDL165W
Uniprot:P06100
Length = 191
Score = 143 (55.4 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 50/153 (32%), Positives = 77/153 (50%)
Query: 701 IGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYI-PRHPAVTPPSY--- 756
+G LS S G D + ++L++ ++ P +E +RS + PR TP S+
Sbjct: 30 LGADLSSMLYSLGIPRDSQ-DHRVLDT--FQSPW---AETSRSEVEPRF--FTPESFTNI 81
Query: 757 PQVQAPIVSNPAF------WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRY 810
P V V+ P F +R++L + +TLFF FY T Q L EL+K++WRY
Sbjct: 82 PGVLQSTVTPPCFNSIQNDQQRVAL--FQDETLFFLFYKHPGTVIQELTYLELRKRNWRY 139
Query: 811 HRKYNTWFQRHE--EPKVANDEF-EQGTYVYFD 840
H+ W + EP V+ D E+G+YV+FD
Sbjct: 140 HKTLKAWLTKDPMMEPIVSADGLSERGSYVFFD 172
Score = 38 (18.4 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 5/23 (21%), Positives = 17/23 (73%)
Query: 62 IKTWIQSSEIKDKKVSASYEQAL 84
+K + +++DK++S++Y+ ++
Sbjct: 6 LKALVPLLKLEDKELSSTYDHSM 28
>UNIPROTKB|F1MID5 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000001285 EMBL:DAAA02013212 EMBL:DAAA02013213
EMBL:DAAA02013214 EMBL:DAAA02013215 IPI:IPI00905002
UniGene:Bt.30639 Ensembl:ENSBTAT00000057053 ArrayExpress:F1MID5
Uniprot:F1MID5
Length = 403
Score = 153 (58.9 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 830
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 297 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 356
Query: 831 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 357 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 386
Score = 59 (25.8 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 31/112 (27%), Positives = 43/112 (38%)
Query: 268 QEQGEDTASQDSNSDVAARTPPAKSSGVGSTAS--TPAVGPATPISI-----NVPAQTLS 320
Q+ G + + SD A + G G+ P G A + + N +Q S
Sbjct: 78 QQNGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFS 137
Query: 321 NASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEEDVGNFPGRRSS 371
+ P LPGSS N S+ + TSST D FPG +SS
Sbjct: 138 IHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST---DGPKFPGDKSS 186
>UNIPROTKB|F1SH40 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
OMA:TQDFSIH GeneTree:ENSGT00390000001285 EMBL:CU467026
Ensembl:ENSSSCT00000000541 Uniprot:F1SH40
Length = 541
Score = 154 (59.3 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 41/123 (33%), Positives = 58/123 (47%)
Query: 749 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 808
P + P Y IV A + L YG D LF+ +Y Q LAA EL + W
Sbjct: 414 PFLMPIEYVTTVIHIVFQLA---AIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDW 470
Query: 809 RYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNY 866
RYH++ W R EP + + +E+GTY +FD N W +++ EF EY+
Sbjct: 471 RYHKEERVWITRAPGMEPTMKTNTYERGTYYFFD--CLN------W-RKVAKEFHLEYDK 521
Query: 867 LED 869
LE+
Sbjct: 522 LEE 524
Score = 61 (26.5 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 455 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 511
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 512 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 571
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 572 MNSVTSASLQQQP-NPIHQQSSQQ 594
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 59 (25.8 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 24/70 (34%), Positives = 30/70 (42%)
Query: 302 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEED 361
P VG T + N +Q S + P LPGSS N S+ TSS+ D
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTSSST--D 313
Query: 362 VGNFPGRRSS 371
FPG +SS
Sbjct: 314 GPKFPGDKSS 323
Score = 42 (19.8 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 246 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGSTA-STPA 303
T G P + T S + + + + SQ + +RT SSG+GS + S+P+
Sbjct: 113 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPSRSSPS 172
Query: 304 V 304
+
Sbjct: 173 I 173
Score = 37 (18.1 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 105 TKTKAFSKEGLGQQPKTDP 123
++T + S GLG ++ P
Sbjct: 153 SRTNSMSSSGLGSPSRSSP 171
>UNIPROTKB|F1M3V0 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00949675 Ensembl:ENSRNOT00000064732
ArrayExpress:F1M3V0 Uniprot:F1M3V0
Length = 493
Score = 153 (58.9 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 830
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 387 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 446
Query: 831 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 447 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 476
Score = 60 (26.2 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 302 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 360
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 210 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 265
Query: 361 DVGNFPGRRSS 371
D FPG +SS
Sbjct: 266 DGPKFPGDKSS 276
Score = 54 (24.1 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 524 GHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQ 583
G + LG+P+ G S P L + SQG+ + + GV +++ S S
Sbjct: 30 GQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGIL 85
Query: 584 P-NPIHQQSSQQ 594
P NP + + Q
Sbjct: 86 PMNPRNMMNHSQ 97
Score = 41 (19.5 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 246 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 303
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 66 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 125
Query: 304 V 304
+
Sbjct: 126 I 126
>MGI|MGI:1919318 [details] [associations]
symbol:Cnot2 "CCR4-NOT transcription complex, subunit 2"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001226 "RNA polymerase II transcription corepressor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010606 "positive
regulation of cytoplasmic mRNA processing body assembly"
evidence=ISO] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:2000036 "regulation of stem
cell maintenance" evidence=ISO] InterPro:IPR007282 Pfam:PF04153
MGI:MGI:1919318 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 CTD:4848 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH OrthoDB:EOG44MXRV
ChiTaRS:CNOT2 EMBL:AK011231 EMBL:AK078121 EMBL:AK149767
EMBL:BC043133 EMBL:BC063105 EMBL:BC065171 IPI:IPI00132821
IPI:IPI00410747 IPI:IPI00410748 RefSeq:NP_001032935.2
RefSeq:NP_001032936.2 RefSeq:NP_001032937.1 RefSeq:NP_082358.2
UniGene:Mm.351553 ProteinModelPortal:Q8C5L3 STRING:Q8C5L3
PhosphoSite:Q8C5L3 PaxDb:Q8C5L3 PRIDE:Q8C5L3
Ensembl:ENSMUST00000105265 Ensembl:ENSMUST00000105267
Ensembl:ENSMUST00000169921 GeneID:72068 KEGG:mmu:72068
UCSC:uc007hca.2 UCSC:uc007hcb.2 UCSC:uc007hcd.2
GeneTree:ENSGT00390000001285 InParanoid:Q8C5L3 NextBio:335352
Bgee:Q8C5L3 CleanEx:MM_CNOT2 Genevestigator:Q8C5L3
GermOnline:ENSMUSG00000020166 Uniprot:Q8C5L3
Length = 540
Score = 153 (58.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 830
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 831 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 61 (26.5 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 455 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 511
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 512 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 571
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 572 MNSVTSASLQQQP-NPIHQQSSQQ 594
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 60 (26.2 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 302 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 360
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 312
Query: 361 DVGNFPGRRSS 371
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 41 (19.5 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 246 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 303
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 113 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 172
Query: 304 V 304
+
Sbjct: 173 I 173
>UNIPROTKB|E2QSF5 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
CTD:4848 KO:K12605 OMA:TQDFSIH GeneTree:ENSGT00390000001285
EMBL:AAEX03007054 EMBL:AAEX03007055 RefSeq:XP_850576.1
Ensembl:ENSCAFT00000000701 GeneID:474446 KEGG:cfa:474446
NextBio:20850458 Uniprot:E2QSF5
Length = 540
Score = 153 (58.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 830
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 831 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 61 (26.5 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 455 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 511
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 512 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 571
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 572 MNSVTSASLQQQP-NPIHQQSSQQ 594
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 57 (25.1 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 302 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 360
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 312
Query: 361 DVGNFPGRRSS 371
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 41 (19.5 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 246 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 303
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 113 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 172
Query: 304 V 304
+
Sbjct: 173 I 173
>UNIPROTKB|Q9NZN8 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=TAS] [GO:0005634
"nucleus" evidence=NAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=NAS] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0010606 "positive regulation
of cytoplasmic mRNA processing body assembly" evidence=IMP]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0001226 "RNA polymerase
II transcription corepressor binding" evidence=IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:2000036 "regulation of stem cell
maintenance" evidence=IMP] [GO:0033147 "negative regulation of
intracellular estrogen receptor signaling pathway" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR007282
Pfam:PF04153 GO:GO:0005829 GO:GO:0005634 GO:GO:0000289
GO:GO:0001104 EMBL:AF180473 EMBL:AF113226 EMBL:AF161480
EMBL:AK000662 EMBL:AL137674 EMBL:BX641116 EMBL:BC002597
EMBL:BC011826 EMBL:AF044215 IPI:IPI00005011 IPI:IPI00017733
IPI:IPI00410621 IPI:IPI00410622 IPI:IPI00410623 PIR:T46494
RefSeq:NP_001186231.1 RefSeq:NP_001186232.1 RefSeq:NP_055330.1
UniGene:Hs.133350 UniGene:Hs.730666 ProteinModelPortal:Q9NZN8
DIP:DIP-42656N IntAct:Q9NZN8 MINT:MINT-1438957 STRING:Q9NZN8
PhosphoSite:Q9NZN8 DMDM:46396017 PaxDb:Q9NZN8 PRIDE:Q9NZN8
DNASU:4848 Ensembl:ENST00000229195 Ensembl:ENST00000418359
Ensembl:ENST00000551043 Ensembl:ENST00000551483 GeneID:4848
KEGG:hsa:4848 UCSC:uc001svv.3 UCSC:uc001svw.1 CTD:4848
GeneCards:GC12P070636 HGNC:HGNC:7878 MIM:604909 neXtProt:NX_Q9NZN8
PharmGKB:PA26673 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 InParanoid:Q9NZN8 KO:K12605 OMA:TQDFSIH
OrthoDB:EOG44MXRV PhylomeDB:Q9NZN8 ChiTaRS:CNOT2 GenomeRNAi:4848
NextBio:18670 ArrayExpress:Q9NZN8 Bgee:Q9NZN8 CleanEx:HS_CNOT2
Genevestigator:Q9NZN8 GermOnline:ENSG00000111596 Uniprot:Q9NZN8
Length = 540
Score = 153 (58.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 830
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 831 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 61 (26.5 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 455 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 511
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 512 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 571
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 572 MNSVTSASLQQQP-NPIHQQSSQQ 594
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 57 (25.1 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 302 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 360
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 312
Query: 361 DVGNFPGRRSS 371
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 41 (19.5 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 246 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 303
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 113 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 172
Query: 304 V 304
+
Sbjct: 173 I 173
>UNIPROTKB|F1LUT7 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00734620 Ensembl:ENSRNOT00000058355
ArrayExpress:F1LUT7 Uniprot:F1LUT7
Length = 549
Score = 153 (58.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 830
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 443 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 502
Query: 831 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 503 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 532
Score = 61 (26.5 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 455 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 511
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 14 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 73
Query: 512 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 571
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 74 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 129
Query: 572 MNSVTSASLQQQP-NPIHQQSSQQ 594
+++ S S P NP + + Q
Sbjct: 130 LHTPPSPSRGILPMNPRNMMNHSQ 153
Score = 60 (26.2 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 302 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 360
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 266 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 321
Query: 361 DVGNFPGRRSS 371
D FPG +SS
Sbjct: 322 DGPKFPGDKSS 332
Score = 41 (19.5 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 246 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 303
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 122 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 181
Query: 304 V 304
+
Sbjct: 182 I 182
>UNIPROTKB|H0YHT6 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7878 ChiTaRS:CNOT2 EMBL:AC025569
EMBL:AC092881 Ensembl:ENST00000551710 Bgee:H0YHT6 Uniprot:H0YHT6
Length = 104
Score = 142 (55.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 830
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 17 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 76
Query: 831 FEQGTYVYFD 840
+E+GTY +FD
Sbjct: 77 YERGTYYFFD 86
>UNIPROTKB|F1LY92 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00366212 Ensembl:ENSRNOT00000006779
ArrayExpress:F1LY92 Uniprot:F1LY92
Length = 531
Score = 153 (58.9 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 830
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 425 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 484
Query: 831 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 485 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 514
Score = 60 (26.2 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 302 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 360
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 248 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 303
Query: 361 DVGNFPGRRSS 371
D FPG +SS
Sbjct: 304 DGPKFPGDKSS 314
Score = 56 (24.8 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 23/120 (19%), Positives = 42/120 (35%)
Query: 476 FTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGG 535
F + + N + +Q+ R ++ G + LG+P+ G
Sbjct: 20 FVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRG 79
Query: 536 NKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 594
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 80 ----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 135
Score = 41 (19.5 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 246 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 303
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 104 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 163
Query: 304 V 304
+
Sbjct: 164 I 164
>UNIPROTKB|F8VV52 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 IPI:IPI00017733 HGNC:HGNC:7878 ChiTaRS:CNOT2
EMBL:AC025569 EMBL:AC092881 PRIDE:F8VV52 Ensembl:ENST00000548159
ArrayExpress:F8VV52 Bgee:F8VV52 Uniprot:F8VV52
Length = 531
Score = 153 (58.9 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 830
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 425 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 484
Query: 831 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 485 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 514
Score = 57 (25.1 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 302 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 360
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 248 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 303
Query: 361 DVGNFPGRRSS 371
D FPG +SS
Sbjct: 304 DGPKFPGDKSS 314
Score = 56 (24.8 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 23/120 (19%), Positives = 42/120 (35%)
Query: 476 FTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGG 535
F + + N + +Q+ R ++ G + LG+P+ G
Sbjct: 20 FVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRG 79
Query: 536 NKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 594
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 80 ----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 135
Score = 41 (19.5 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 246 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 303
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 104 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 163
Query: 304 V 304
+
Sbjct: 164 I 164
>UNIPROTKB|E1BCE7 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
OMA:TQDFSIH GeneTree:ENSGT00390000001285 EMBL:DAAA02013212
EMBL:DAAA02013213 EMBL:DAAA02013214 EMBL:DAAA02013215
IPI:IPI00692269 Ensembl:ENSBTAT00000004880 ArrayExpress:E1BCE7
Uniprot:E1BCE7
Length = 540
Score = 153 (58.9 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 830
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 831 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 57 (25.1 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 302 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 360
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 312
Query: 361 DVGNFPGRRSS 371
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 56 (24.8 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 23/120 (19%), Positives = 42/120 (35%)
Query: 476 FTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGG 535
F + + N + +Q+ R ++ G + LG+P+ G
Sbjct: 29 FVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRG 88
Query: 536 NKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 594
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 89 ----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 41 (19.5 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 246 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 303
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 113 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 172
Query: 304 V 304
+
Sbjct: 173 I 173
>ZFIN|ZDB-GENE-070410-70 [details] [associations]
symbol:zgc:162316 "zgc:162316" species:7955 "Danio
rerio" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 ZFIN:ZDB-GENE-070410-70
GO:GO:0005634 GO:GO:0006355 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH OrthoDB:EOG44MXRV
GeneTree:ENSGT00390000001285 EMBL:CR376836 EMBL:CR382363
EMBL:BC134959 IPI:IPI00799285 RefSeq:NP_001082993.1
UniGene:Dr.78739 STRING:A4QN63 Ensembl:ENSDART00000088383
GeneID:100037372 KEGG:dre:100037372 InParanoid:A4QN63
NextBio:20788534 Uniprot:A4QN63
Length = 520
Score = 162 (62.1 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 830
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 414 IKLGRYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNT 473
Query: 831 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+E+GTY +FD H W +++ EF EY+ LE+
Sbjct: 474 YERGTYYFFDCH--------NW-RKVAKEFHLEYDKLEE 503
Score = 46 (21.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 39/192 (20%), Positives = 70/192 (36%)
Query: 287 TPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVF--DNTGP 344
+P SSG S GP + + ++ SN +P L S +G ++ P
Sbjct: 40 SPSPSSSGQLSQLGASLYGPQSALGFSIRGM-----SNNNPQL-NRSLTQGTQLPSHSTP 93
Query: 345 ISSSPPVNLTSSTKEEDVGNFP-GRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPS 403
+ P ++L ++ + G P R+ S + MG G + PS
Sbjct: 94 TTGVPTMSLHTTPPSPNRGILPMNTRNMMSSQVGQGMGMSGRTNSMGSSGLGSPNRSSPS 153
Query: 404 NGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSL-VSPLSNRMILSQAAKGNDGTGSIDS 462
+ +P + + + G G Q ++ LSN + G DG+ ++
Sbjct: 154 ---IICMPKQQPARQPFTINSMSGFGM-GRSQGFGMNSLSNNIF-----NGTDGSENVTG 204
Query: 463 NNAGETVAMAGR 474
+ E A+A R
Sbjct: 205 IDLSEFPALADR 216
Score = 42 (19.8 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 242 EDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSS 293
ED + P K +ST + +S+ G+ ++S D +T A+++
Sbjct: 258 EDFPALPGPNY-KDPTLSTDESKSSLNSSGKGSSSADGPKFPGDKTSSAQNN 308
Score = 42 (19.8 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 22/123 (17%), Positives = 48/123 (39%)
Query: 478 PSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNK 537
P M + + FQ+++E + + Q + G + LG + G
Sbjct: 17 PDESMYYNQASMFQHRSEKDMLPSPSPSSSGQLSQLGASLY-----GPQSALGFSIRG-- 69
Query: 538 QFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLM 597
S NP L + +QG+ + + + GV +++ T S + P++ ++ + +
Sbjct: 70 --MSNNNPQLNRSLTQGTQLPSHSTPTTGVPTMSLHT-TPPSPNRGILPMNTRNMMSSQV 126
Query: 598 SGG 600
G
Sbjct: 127 GQG 129
>UNIPROTKB|Q5ZKI3 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR007282
Pfam:PF04153 GO:GO:0005634 GO:GO:0006355 eggNOG:COG5601
HOGENOM:HOG000246523 HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH
OrthoDB:EOG44MXRV GeneTree:ENSGT00390000001285 EMBL:AADN02009856
EMBL:AJ720101 IPI:IPI00592451 RefSeq:NP_001012826.1
UniGene:Gga.50456 UniGene:Gga.9400 STRING:Q5ZKI3
Ensembl:ENSGALT00000016314 GeneID:417851 KEGG:gga:417851
InParanoid:Q5ZKI3 NextBio:20821090 Uniprot:Q5ZKI3
Length = 520
Score = 153 (58.9 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 830
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 414 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 473
Query: 831 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 474 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 503
Score = 54 (24.1 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 524 GHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQ 583
G + LG+P+ G S P L + SQG+ + + GV +++ S S
Sbjct: 57 GQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGIL 112
Query: 584 P-NPIHQQSSQQ 594
P NP + + Q
Sbjct: 113 PMNPRNMMNHSQ 124
Score = 54 (24.1 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 25/71 (35%), Positives = 30/71 (42%)
Query: 302 PAVGPAT-PISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEE 360
P VG T P S +Q S + P LPGSS N S+ TSS+
Sbjct: 237 PYVGMVTKPASEQ--SQDFSIHNEDFPALPGSSYKDPTSSNDDNKSNLNTSGKTSSST-- 292
Query: 361 DVGNFPGRRSS 371
D FPG +SS
Sbjct: 293 DGPKFPGDKSS 303
Score = 41 (19.5 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 246 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 303
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 93 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 152
Query: 304 V 304
+
Sbjct: 153 I 153
>RGD|1311672 [details] [associations]
symbol:Cnot2 "CCR4-NOT transcription complex, subunit 2"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001226 "RNA polymerase II transcription corepressor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0010606 "positive regulation of
cytoplasmic mRNA processing body assembly" evidence=ISO]
[GO:0030014 "CCR4-NOT complex" evidence=ISO] [GO:0033147 "negative
regulation of intracellular estrogen receptor signaling pathway"
evidence=ISO] [GO:2000036 "regulation of stem cell maintenance"
evidence=ISO] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=ISO] InterPro:IPR007282 Pfam:PF04153 RGD:1311672
GO:GO:0005634 GO:GO:0006355 CTD:4848 eggNOG:COG5601
HOGENOM:HOG000246523 HOVERGEN:HBG051041 KO:K12605
GeneTree:ENSGT00390000001285 EMBL:BC087653 IPI:IPI00952054
RefSeq:NP_001011988.1 UniGene:Rn.99836 STRING:Q5PPJ8
Ensembl:ENSRNOT00000066396 GeneID:299805 KEGG:rno:299805
UCSC:RGD:1311672 InParanoid:Q5PPJ8 NextBio:645798
Genevestigator:Q5PPJ8 Uniprot:Q5PPJ8
Length = 429
Score = 142 (55.0 bits), Expect = 7.9e-08, Sum P(3) = 7.9e-08
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 830
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 349 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 408
Query: 831 FEQGTYVYFD 840
+E+GTY +FD
Sbjct: 409 YERGTYYFFD 418
Score = 60 (26.2 bits), Expect = 7.9e-08, Sum P(3) = 7.9e-08
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 302 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 360
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 172 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 227
Query: 361 DVGNFPGRRSS 371
D FPG +SS
Sbjct: 228 DGPKFPGDKSS 238
Score = 41 (19.5 bits), Expect = 7.9e-08, Sum P(3) = 7.9e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 246 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 303
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 28 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 87
Query: 304 V 304
+
Sbjct: 88 I 88
Score = 39 (18.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 541 SQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 594
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 5 SNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 59
>UNIPROTKB|Q52JK6 [details] [associations]
symbol:VIP2 "Probable NOT transcription complex subunit
VIP2" species:4100 "Nicotiana benthamiana" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0015074 "DNA integration" evidence=IMP]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
GO:GO:0006351 GO:GO:0015074 EMBL:DQ000202 Uniprot:Q52JK6
Length = 603
Score = 154 (59.3 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 38/122 (31%), Positives = 56/122 (45%)
Query: 721 NMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGT 780
N+ E+ + P E A+ P T P + P N A++ + LD
Sbjct: 463 NLNSAENLYKTFGSPWSDEPAKG----DPEFTVPQCYYAKQPPPLNQAYFSKFQLD---- 514
Query: 781 DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR--HEEPKVANDEFEQGTYVY 838
TLF+ FY Q AA EL + W YHR++ WF R + EP V + +E+G+Y+
Sbjct: 515 -TLFYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYIC 573
Query: 839 FD 840
FD
Sbjct: 574 FD 575
Score = 45 (20.9 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 39/157 (24%), Positives = 59/157 (37%)
Query: 350 PVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXAT--AVPSNGN- 406
P NL S+ + GN G S V+G G + GN
Sbjct: 34 PNNLPSALSQIPQGNSHGHSGMTSRGGTSVVGNPGYSSNTNGVGGSIPGILPTFAAIGNR 93
Query: 407 -----LGAVPLVSDVAKR------NILGAEE--RLGSSGMVQSLVSPLSNRMILSQAAKG 453
LG P++ + R NI+G R SSG S V L++R+ ++
Sbjct: 94 SSVPGLGVSPILGNAGPRMTNSVGNIVGGGNIGRSISSGAGLS-VPGLASRLNMN----A 148
Query: 454 NDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSF 490
N G+G++ N G M+G + S + GNS+
Sbjct: 149 NSGSGNL--NVQGPNRLMSGVLQQASPQVLSMLGNSY 183
Score = 43 (20.2 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 554 GSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSG 599
G +I G G+ PG+ S + + ++ Q + LMSG
Sbjct: 122 GGNIGRSISSGAGLSVPGLASRLNMNANSGSGNLNVQGPNR-LMSG 166
>TAIR|locus:505006107 [details] [associations]
symbol:NOT2a "Negative on TATA less2a" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR007282 Pfam:PF04153 EMBL:CP002684 GO:GO:0005634
GO:GO:0006355 EMBL:AC007583 eggNOG:COG5601 KO:K12605
HOGENOM:HOG000005739 IPI:IPI00852321 RefSeq:NP_001077478.1
UniGene:At.42289 PaxDb:A8MR45 PRIDE:A8MR45
EnsemblPlants:AT1G07705.2 GeneID:837284 KEGG:ath:AT1G07705
TAIR:At1g07705 InParanoid:A8MR45 OMA:RMNDADL PhylomeDB:A8MR45
ProtClustDB:CLSN2693279 Genevestigator:A8MR45 Uniprot:A8MR45
Length = 614
Score = 134 (52.2 bits), Expect = 7.2e-06, Sum P(3) = 7.2e-06
Identities = 29/92 (31%), Positives = 42/92 (45%)
Query: 749 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 808
P+ P + Q NP + +TLF+ FY Q AA EL + W
Sbjct: 492 PSKVDPEFSVPQCYYAKNPPPLHQGLFAKLLVETLFYVFYSMPKDEAQLYAANELYNRGW 551
Query: 809 RYHRKYNTWFQRHEEPKVANDEFEQGTYVYFD 840
YH+++ WF R EP V + +E+G+Y FD
Sbjct: 552 FYHKEHRLWFIRIGEPLVKTNAYERGSYHCFD 583
Score = 53 (23.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 68/297 (22%), Positives = 101/297 (34%)
Query: 311 SINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRS 370
S N+P LS S+ GSS N G + SP + S +GN G
Sbjct: 93 SSNIPV-ALSQMSH------GSSHGHSGLTNRGGLGVSPILGNVGSRMTSSMGNMVGGG- 144
Query: 371 SPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGS 430
T R + GG A S GN+G ++ V + LG+
Sbjct: 145 ----TMGRTLSSGGGLSIPSLGSRLNLAVNSGS-GNIGQNRMMGGVLPQGSPQVLSMLGN 199
Query: 431 S-----GMVQSLVSPLSN--RMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQ 483
S G+ Q+ V +++ M L ND T D NN + + R S G Q
Sbjct: 200 SYPSAGGLSQNHVQAMNSLSSMGLLNDMNSND-TSPFDINN--DFPQLTSR--PSSAGSQ 254
Query: 484 WRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHS-NLLGMPLGGNKQFSSQ 542
+ G+ + Q G + I +E G+ + P+ + +
Sbjct: 255 GQLGSRLK------QGLGISPIVQQNQEFSIQNEDFPALPGYKGSSADYPMDLHHKEQLH 308
Query: 543 QNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSG 599
+N +L SQ S+ G LG + TS QQQ SS + G
Sbjct: 309 ENSVLMM-QSQQLSMGRSGGFNLG------GAYTSHRPQQQQQHAQAVSSSGVSLHG 358
Score = 51 (23.0 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 690 IGRRSVSDLG-AIGDSLSGATVSSGG 714
+G R S +G +G G T+SSGG
Sbjct: 129 VGSRMTSSMGNMVGGGTMGRTLSSGG 154
Score = 50 (22.7 bits), Expect = 7.2e-06, Sum P(3) = 7.2e-06
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 530 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQ--PNPI 587
G+ L G+ FSS P ++SQ G+GL NS+T QQ
Sbjct: 353 GVSLHGSDIFSSSHPP----YHSQ---TGGAPGIGLR-SMNSANSITGMGYDQQLIQQYQ 404
Query: 588 HQQSSQQ 594
HQQ+S Q
Sbjct: 405 HQQNSAQ 411
Score = 47 (21.6 bits), Expect = 7.2e-06, Sum P(3) = 7.2e-06
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 292 SSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLP-GSSSVRGVFDNTGP 344
SSG G S P++G +++N + + VLP GS V + N+ P
Sbjct: 151 SSGGG--LSIPSLGSRLNLAVNSGSGNIGQNRMMGGVLPQGSPQVLSMLGNSYP 202
Score = 44 (20.5 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 551 NSQGS-SISAQAGLGLGVQAPGMNSVTSASLQQQPNPI 587
N G+ ++ AG LG + +N V SA +QQQ I
Sbjct: 50 NIHGNFNVPNLAG-SLGSRNSSLNGVPSAGVQQQNGSI 86
>DICTYBASE|DDB_G0289701 [details] [associations]
symbol:DDB_G0289701 "ezrin/radixin/moesin C-terminal
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0016020 "membrane" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0005215 "transporter activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR014161
InterPro:IPR015943 dictyBase:DDB_G0289701 GO:GO:0016020
Gene3D:2.130.10.10 GO:GO:0005215 EMBL:AAFI02000148 eggNOG:NOG12793
TIGRFAMs:TIGR02794 RefSeq:XP_636066.1 PRIDE:Q54H52
EnsemblProtists:DDB0235251 GeneID:8627276 KEGG:ddi:DDB_G0289701
InParanoid:Q54H52 OMA:ENYRHEV Uniprot:Q54H52
Length = 1704
Score = 103 (41.3 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 70/312 (22%), Positives = 103/312 (33%)
Query: 271 GEDTASQDSNSDVAARTPPAKSSGVGSTASTPAV-GPATPI----SINVPAQTLSNASNT 325
G A Q S+ + +P +S GST++TP+V G + S P + +S+T
Sbjct: 1393 GAKPAPQTSSVFGSTSSPSTTTSAFGSTSTTPSVFGNTSAFGGGGSTTTPTTSAFGSSST 1452
Query: 326 SPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGX 385
+P G+ + G T S+P TS+ F G + S G
Sbjct: 1453 TPAFGGTPAF-GSAPTTSAFGSAPTTT-TSAFGSSSTPAFGGTSAFGSAPTTSAFGSTPA 1510
Query: 386 XXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGA------EERLGSSGMVQSLVS 439
+ P+ G+ P GA GS+ + S
Sbjct: 1511 TGAFGSAPTTSAFGSTPATSAFGSTPTTGAFGSTPTTGAFGSTPTTSAFGSTPTTGAFGS 1570
Query: 440 PLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQF 499
+ S +A G+ T S A T A G TP+ G T ++F + + P F
Sbjct: 1571 TPTTSAFGSTSAFGSTPTTSA-FGGAPTTNAF-GSSSTPAFGST-PTTSAFGSSSTPA-F 1626
Query: 500 RGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMP----LGGNKQF-SSQQNPLLQQFNSQG 554
G + G S P GG F S+ P F SQ
Sbjct: 1627 GGTSAFGGAPTTSAFGSSSTPAFGGTSAFGSTPTTSAFGGGSVFGSTSSQPTSSVFGSQF 1686
Query: 555 SSISAQAGLGLG 566
S SA + LG
Sbjct: 1687 GSNSAPSFASLG 1698
Score = 96 (38.9 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 41/143 (28%), Positives = 71/143 (49%)
Query: 26 DSIWNKVYDTDNA--NQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQA 83
+S++ K D + ++EK E + ++ KL+R + K Q+ E+KDK + E+
Sbjct: 1111 NSLFTKNLDLEKEAKERQEKIERETRELQDKLEREEREAKEK-QARELKDKLEREAKEK- 1168
Query: 84 LVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSE-L 142
AR+L E++ E+E K KA KE +Q + + KEKA+ E R+ + E L
Sbjct: 1169 --QARELKEKQ-------EREAKEKA-EKEANEKQER-EAKEKAEKEAREKIEKEAKEKL 1217
Query: 143 ESQI-DSFEAELEGLTVKKGKTR 164
E + + E E + K+ K +
Sbjct: 1218 EREAKEKLEREAKEKAEKEAKEK 1240
Score = 89 (36.4 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 38/147 (25%), Positives = 75/147 (51%)
Query: 4 SRKLQGEIDRVLKKVQE--GVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQ 61
+R+LQ +++R ++ +E ++ D + + + KEK E + K++ +K +
Sbjct: 1135 TRELQDKLEREEREAKEKQARELKDKLEREAKEKQARELKEKQEREAKEKAEKEANEK-- 1192
Query: 62 IKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAF--SKEGLGQQP 119
Q E K+K + E+ +A++ +ERE + K+ E+E K KA +KE L ++
Sbjct: 1193 -----QEREAKEKAEKEAREKIEKEAKEKLEREAKE-KL-EREAKEKAEKEAKEKLEKEA 1245
Query: 120 KT----DPKEKAKSETRDWLNNLVSEL 142
K + KEKA+ ++ + NN + L
Sbjct: 1246 KEKLEKEAKEKAEKDSAN-ANNALGAL 1271
Score = 84 (34.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 35/139 (25%), Positives = 69/139 (49%)
Query: 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD--QIKTWIQ 67
++++ K+ QE ++ + + KEK +LK ++++ + + ++K Q
Sbjct: 1119 DLEKEAKERQEKIERETRELQDKLEREEREAKEKQARELKDKLEREAKEKQARELKEK-Q 1177
Query: 68 SSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 127
E K+K + E+ +A++ E+E R KI EKE K K +E ++ + + KEKA
Sbjct: 1178 EREAKEKAEKEANEKQEREAKEKAEKEA-REKI-EKEAKEK-LEREAK-EKLEREAKEKA 1233
Query: 128 KSETRDWLNNLVSE-LESQ 145
+ E ++ L E LE +
Sbjct: 1234 EKEAKEKLEKEAKEKLEKE 1252
>FB|FBgn0017550 [details] [associations]
symbol:Rga "Regena" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IEA;NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0046331 "lateral inhibition" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR007282 Pfam:PF04153
EMBL:AE014297 GO:GO:0005634 GO:GO:0005737 GO:GO:0007095
GO:GO:0006355 GO:GO:0006351 GO:GO:0046331 EMBL:U75467 GO:GO:0030014
eggNOG:COG5601 KO:K12605 GeneTree:ENSGT00390000001285 EMBL:AY094772
EMBL:BT025208 RefSeq:NP_524239.2 RefSeq:NP_730966.1 UniGene:Dm.2486
STRING:Q94547 PaxDb:Q94547 PRIDE:Q94547 EnsemblMetazoa:FBtr0078741
GeneID:40683 KEGG:dme:Dmel_CG2161 UCSC:CG2161-RA CTD:40683
FlyBase:FBgn0017550 InParanoid:Q94547 OMA:KVTNIPA OrthoDB:EOG459ZWX
PhylomeDB:Q94547 ChiTaRS:Rga GenomeRNAi:40683 NextBio:820039
Bgee:Q94547 GermOnline:CG2161 Uniprot:Q94547
Length = 585
Score = 109 (43.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 781 DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVY 838
D LFF FY Q +AA EL + WRYH + W R + N E+GT+ Y
Sbjct: 491 DLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITRIPGIDQYEKNGTKERGTFYY 550
Query: 839 FD 840
FD
Sbjct: 551 FD 552
Score = 77 (32.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 42/181 (23%), Positives = 65/181 (35%)
Query: 294 GVGSTASTPAVGPAT--PISINVPAQTLSNASNTSPVLP-GSSSVRGVFDNTGPISSSPP 350
G GS STPA+ T P N Q ++P+ P GS F + G +
Sbjct: 149 GGGSDTSTPALLDPTEFPSLTNARGQNDQTLPQSNPLQPPGSKPYGNFFTSFGMVKQPTS 208
Query: 351 VNLTSSTKEEDVGNFPGRRSSPSLTDV--RVMGRGGXXXXXXXXXXXXXATAVPSNGNLG 408
+ ED PG ++S T+ V G GG T P N ++
Sbjct: 209 EQSEFTMSNEDFPALPGTQNSDGTTNAVGSVAGTGGSGGASTENHLD--GTEKPMN-SIV 265
Query: 409 AVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGET 468
S + N+ G +G +G+ ++ S + + G+ G G + N A
Sbjct: 266 VSGSASGSSGSNV-GV---VGGNGL-GAVGSGIGGLAVGGGGGAGSSGGGGVGGNAASGV 320
Query: 469 V 469
V
Sbjct: 321 V 321
>TAIR|locus:2174259 [details] [associations]
symbol:VIP2 "VIRE2 interacting protein 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0015074 "DNA integration" evidence=IMP]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0006351 GO:GO:0015074
eggNOG:COG5601 KO:K12605 EMBL:AB006705 EMBL:AK117230 EMBL:AF295433
IPI:IPI00536853 RefSeq:NP_568912.2 UniGene:At.24144 PaxDb:Q9FPW4
PRIDE:Q9FPW4 EnsemblPlants:AT5G59710.1 GeneID:836092
KEGG:ath:AT5G59710 TAIR:At5g59710 HOGENOM:HOG000005739
InParanoid:Q9FPW4 OMA:PEYLINM PhylomeDB:Q9FPW4
Genevestigator:Q9FPW4 Uniprot:Q9FPW4
Length = 614
Score = 132 (51.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 29/92 (31%), Positives = 41/92 (44%)
Query: 749 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 808
PA + + + P R S + + LF+ FY Q AA EL ++ W
Sbjct: 495 PAKSEVEFTVPNCYYATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGW 554
Query: 809 RYHRKYNTWFQRHEEPKVANDEFEQGTYVYFD 840
YH++ WF R EP V +E+GTY Y D
Sbjct: 555 FYHKELRVWFFRVGEPLVRAATYERGTYEYLD 586
Score = 52 (23.4 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 46/192 (23%), Positives = 76/192 (39%)
Query: 318 TLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGN--FPGRR----SS 371
T N+S S G G F + S++ PVNL+ + G+ P R +
Sbjct: 64 TSRNSSMNSIPSAGVQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHSGIPNRGLNVVGN 123
Query: 372 PSLTDVRVMGRGGXX-XXXXXXXXXXXATAVPSNGN---LG-AVPLVSDVAKRNILGAEE 426
P + G GG +VP G LG + P +++ + N++G
Sbjct: 124 PGFSS-NANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITN-SMGNMVGGGN 181
Query: 427 RLGSSGMVQSLVSP-LSNRMILSQAAKGNDGTG-SIDSNNA--GETVAMAGRVFTPSMGM 482
LG + L P LS+R+ L+ N G+G ++ N G + +V + +G
Sbjct: 182 -LGRNISSGGLSIPGLSSRLNLA----ANSGSGLNVQGQNRMMGGVLPQGSQVMS-MLGN 235
Query: 483 QWRTGNSFQNQN 494
+ TG +QN
Sbjct: 236 SYHTGGGPLSQN 247
Score = 43 (20.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 37/164 (22%), Positives = 57/164 (34%)
Query: 429 GSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGN 488
G SG+ ++ + N S A I S +AG ++ R P MG+ GN
Sbjct: 109 GHSGIPNRGLNVVGNPGFSSNANGVGGSIPGILSTSAG----LSNRNSVPGMGISQLLGN 164
Query: 489 SFQN-QNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQ-QNPL 546
S N G G + + G S+ L + + Q QN +
Sbjct: 165 SGPRITNSMGNMVGGGNLGRN------ISSGGLSIPGLSSRLNLAANSGSGLNVQGQNRM 218
Query: 547 LQQFNSQGSSISAQAG----LGLGVQAPG-MNSVTSASLQQQPN 585
+ QGS + + G G G + + SV + L PN
Sbjct: 219 MGGVLPQGSQVMSMLGNSYHTGGGPLSQNHVQSVNNMMLSDHPN 262
Score = 40 (19.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 572 MNSVTSASLQQQPN 585
MNS+ SA +QQ PN
Sbjct: 70 MNSIPSAGVQQ-PN 82
>DICTYBASE|DDB_G0284577 [details] [associations]
symbol:DDB_G0284577 "putative CCR4-NOT complex
subunit 2" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISS] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
InterPro:IPR007282 Pfam:PF04153 dictyBase:DDB_G0284577
GO:GO:0005634 GO:GO:0006355 GO:GO:0016567 EMBL:AAFI02000066
GO:GO:0030015 eggNOG:COG5601 KO:K12605 RefSeq:XP_638512.1
EnsemblProtists:DDB0237628 GeneID:8624662 KEGG:ddi:DDB_G0284577
OMA:HEEYQRK ProtClustDB:CLSZ2846720 Uniprot:Q54PG2
Length = 579
Score = 122 (48.0 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 762 PIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRH 821
P + +P F +++L +Y +TLF+ FY Q AA EL + WRYH++ W R
Sbjct: 433 PNLESPTF--KMNLFTY--ETLFYIFYSMPKDVLQLHAAIELYDRDWRYHKEGKIWLTRV 488
Query: 822 E--EPKVANDEFEQGTYVYFDFHI 843
+ EP + + FE G++ +FD I
Sbjct: 489 QGTEPNITST-FEVGSFFFFDVTI 511
Score = 60 (26.2 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 29/119 (24%), Positives = 49/119 (41%)
Query: 488 NSFQNQNEPGQ---FRGRTE-IAPDQREKFXXXXXXXXXXG----HSNLLGMPLGGNKQF 539
N QNQN+ Q FRG+ + + Q + +SN+ GMP GGN
Sbjct: 52 NQQQNQNQQNQQQNFRGQNQNMMGGQNQNNNNNNSSNINNNRVGNNSNINGMPTGGNMAT 111
Query: 540 SSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMS 598
+ ++ N+ ++ + + P ++S++ QQ P P QQ Q +S
Sbjct: 112 NINNMNMMNNNNNTNNNNNGR---------P----ISSSNSQQPPPPPQQQQQPQQPLS 157
>POMBASE|SPCC4G3.15c [details] [associations]
symbol:not2 "CCR4-Not complex subunit Not2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=IC] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0030015 "CCR4-NOT core
complex" evidence=ISO] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISO] InterPro:IPR007282 Pfam:PF04153 PomBase:SPCC4G3.15c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0006357 GO:GO:0000289 GO:GO:0030015 GO:GO:0006354
eggNOG:COG5601 HOGENOM:HOG000246523 PIR:T41361 RefSeq:NP_587823.2
STRING:P87240 EnsemblFungi:SPCC4G3.15c.1 GeneID:2538778
OrthoDB:EOG4TB7MJ NextBio:20799960 Uniprot:P87240
Length = 306
Score = 129 (50.5 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 37/120 (30%), Positives = 55/120 (45%)
Query: 753 PPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR 812
P Y V P PA + + + +TLF+ FY Q AA+EL ++WR+H+
Sbjct: 196 PACYKNVNPP----PAISK---IFQFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHK 248
Query: 813 KYNTWFQRHE--EPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+ W +P +FE+G Y++FD H W +RIK +F Y LED
Sbjct: 249 ELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIH---------W-KRIKKDFLLMYAALED 298
>UNIPROTKB|D4AD67 [details] [associations]
symbol:Ktn1 "Protein Ktn1" species:10116 "Rattus
norvegicus" [GO:0007018 "microtubule-based movement" evidence=IEA]
[GO:0019894 "kinesin binding" evidence=IEA] InterPro:IPR024854
GO:GO:0007018 OrthoDB:EOG4Z62N5 PANTHER:PTHR18864
GeneTree:ENSGT00530000063895 IPI:IPI00392181
Ensembl:ENSRNOT00000037854 ArrayExpress:D4AD67 Uniprot:D4AD67
Length = 1272
Score = 135 (52.6 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 78/307 (25%), Positives = 141/307 (45%)
Query: 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ-RYRDQIK 63
+K E D L+ V+E ++ + + N + L KE+++L+ + DQ+
Sbjct: 736 KKCIQEKDEKLRTVEELLET--GLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVP 793
Query: 64 TWIQSSEIKD-KKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEG--LGQQPK 120
++ S I+D KKV + + +L+E E+ K+ KE +A +E L ++
Sbjct: 794 -FV--SLIEDLKKVIHEKDGQIKSVEELLEVEL--LKVANKEKTVQALKQEIEILKEEIG 848
Query: 121 TDPKEKAK-----SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR---PPRLTHLE 172
EKA S+ ++ L NL+ E Q+DS +A LE LT ++ T+ PR LE
Sbjct: 849 NAQLEKAHQLSVTSQVQE-LQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELE 907
Query: 173 TSITRHKAHIMKLELILRLLDND-ELSPEQVNDVKD---LLEDYVER-NQDDFEE--FSD 225
+ I ++E IL+ +D E + +V+D L + VE+ N + ++ F
Sbjct: 908 NVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPS 967
Query: 226 VDELYHLLPLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAA 285
+EL ++ +K + + DL +K V HQ+ + + Q + A + + D+
Sbjct: 968 QEELQTVIS-EKEKEITDLCN--ELESLKNAV--EHQRKKNNERQQQVEAVELESKDLLK 1022
Query: 286 RTPPAKS 292
R PA S
Sbjct: 1023 RLFPAVS 1029
>WB|WBGene00019273 [details] [associations]
symbol:H43E16.1 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] eggNOG:NOG12793
GeneTree:ENSGT00700000104630 EMBL:FO080627 RefSeq:NP_495358.1
ProteinModelPortal:Q9N5K0 PaxDb:Q9N5K0 EnsemblMetazoa:H43E16.1
GeneID:174101 KEGG:cel:CELE_H43E16.1 UCSC:H43E16.1 CTD:174101
WormBase:H43E16.1 InParanoid:Q9N5K0 OMA:NVVHSAG NextBio:882515
Uniprot:Q9N5K0
Length = 1203
Score = 128 (50.1 bits), Expect = 0.00040, P = 0.00040
Identities = 81/336 (24%), Positives = 118/336 (35%)
Query: 255 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINV 314
+T+ ST Q S + SQ + PP SS +T ST + T +S+
Sbjct: 622 STIGSTVTQAPSSSTSMGPSPSQSTAGSTMTSAPPVTSSSSANTGSTSS---GTTVSV-- 676
Query: 315 PAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSS---TKEEDVGNFPGRRS 370
QT +S TSPV SS + +G SS VN SS T+ +
Sbjct: 677 --QTTQVSSTTSPVASSSSQMTSTQQPSGSSSSIGSTVNQGSSSVTTQPPASSRSTASQG 734
Query: 371 SPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGS 430
S S + G +T+VPS+ GA S V + + L S
Sbjct: 735 SSSAQPIASSSTMGSTAGSSSPQPTASSTSVPSS--TGATSSGSTVGSSTMGSTQSSLPS 792
Query: 431 SGMVQ--SLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGN 488
S M S S ++N++ S + G T I S+ A + +G+ + G +
Sbjct: 793 STMTNTGSTGSTVTNQLA-SSSTYGASSTEPIASSTANPGSSTSGQTAVTTQG-----SS 846
Query: 489 SFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQ 548
S Q + G G T P + G G ++Q + Q
Sbjct: 847 STQTNSNTGS-TGSTVTNPPVSSSTSGSSSTQPIASSTANPGSSTSGTTVVTTQGSSSTQ 905
Query: 549 QFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP 584
+ GS+ G V P S TSAS QP
Sbjct: 906 TNPNTGST-------GSTVTQPSAFSSTSASSSTQP 934
>WB|WBGene00003825 [details] [associations]
symbol:ntl-2 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0019915 "lipid storage"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] InterPro:IPR007282 Pfam:PF04153
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006355 GO:GO:0040011 GO:GO:0040018 GO:GO:0019915
GO:GO:0040035 HOGENOM:HOG000246523 KO:K12605
GeneTree:ENSGT00390000001285 EMBL:FO080154 GeneID:173773
KEGG:cel:CELE_B0286.4 UCSC:B0286.4a.1 CTD:173773 NextBio:881031
PIR:T15310 RefSeq:NP_494772.1 ProteinModelPortal:Q10923
DIP:DIP-25406N IntAct:Q10923 MINT:MINT-1053402 STRING:Q10923
PRIDE:Q10923 EnsemblMetazoa:B0286.4a.1 EnsemblMetazoa:B0286.4a.2
WormBase:B0286.4a InParanoid:Q10923 OMA:THNHIRD ArrayExpress:Q10923
Uniprot:Q10923
Length = 444
Score = 120 (47.3 bits), Expect = 0.00078, P = 0.00078
Identities = 33/99 (33%), Positives = 43/99 (43%)
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVAND--E 830
L L+ D LF+ FY N Q AA EL + WR+H+ W R + V
Sbjct: 263 LRLNKVSEDVLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGN 322
Query: 831 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+E+G Y FD Q W ++I E EY LED
Sbjct: 323 YEKGHYNVFD--------QMQW-RKIPKELKLEYKELED 352
>UNIPROTKB|Q10923 [details] [associations]
symbol:ntl-2 "Protein NTL-2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0006355
GO:GO:0040011 GO:GO:0040018 GO:GO:0019915 GO:GO:0040035
HOGENOM:HOG000246523 KO:K12605 GeneTree:ENSGT00390000001285
EMBL:FO080154 GeneID:173773 KEGG:cel:CELE_B0286.4 UCSC:B0286.4a.1
CTD:173773 NextBio:881031 PIR:T15310 RefSeq:NP_494772.1
ProteinModelPortal:Q10923 DIP:DIP-25406N IntAct:Q10923
MINT:MINT-1053402 STRING:Q10923 PRIDE:Q10923
EnsemblMetazoa:B0286.4a.1 EnsemblMetazoa:B0286.4a.2
WormBase:B0286.4a InParanoid:Q10923 OMA:THNHIRD ArrayExpress:Q10923
Uniprot:Q10923
Length = 444
Score = 120 (47.3 bits), Expect = 0.00078, P = 0.00078
Identities = 33/99 (33%), Positives = 43/99 (43%)
Query: 773 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVAND--E 830
L L+ D LF+ FY N Q AA EL + WR+H+ W R + V
Sbjct: 263 LRLNKVSEDVLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGN 322
Query: 831 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 869
+E+G Y FD Q W ++I E EY LED
Sbjct: 323 YEKGHYNVFD--------QMQW-RKIPKELKLEYKELED 352
>UNIPROTKB|O15083 [details] [associations]
symbol:ERC2 "ERC protein 2" species:9606 "Homo sapiens"
[GO:0030054 "cell junction" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030426 "growth cone"
evidence=ISS] [GO:0042734 "presynaptic membrane" evidence=ISS]
GO:GO:0005737 GO:GO:0005856 GO:GO:0030054 GO:GO:0042734
GO:GO:0030426 eggNOG:NOG12793 EMBL:AB002376 EMBL:BC046212
EMBL:BC111550 EMBL:BC112391 IPI:IPI00472614 RefSeq:NP_056391.1
UniGene:Hs.476389 ProteinModelPortal:O15083 SMR:O15083
IntAct:O15083 STRING:O15083 PhosphoSite:O15083 PaxDb:O15083
PRIDE:O15083 Ensembl:ENST00000288221 Ensembl:ENST00000460849
GeneID:26059 KEGG:hsa:26059 UCSC:uc003dhr.1 CTD:26059
GeneCards:GC03M055542 HGNC:HGNC:31922 HPA:CAB012344
neXtProt:NX_O15083 PharmGKB:PA162385249 HOGENOM:HOG000236353
HOVERGEN:HBG051496 InParanoid:O15083 OMA:LRHMKDQ OrthoDB:EOG4FTW00
ChiTaRS:ERC2 GenomeRNAi:26059 NextBio:47950 Bgee:O15083
CleanEx:HS_ERC2 Genevestigator:O15083 GermOnline:ENSG00000187672
InterPro:IPR019323 Pfam:PF10174 Uniprot:O15083
Length = 957
Score = 124 (48.7 bits), Expect = 0.00081, P = 0.00081
Identities = 50/203 (24%), Positives = 94/203 (46%)
Query: 37 NANQK--EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIERE 94
N QK E + L+ + K+L +D++K+ +Q+ A+ E+AL + ++IER
Sbjct: 542 NVLQKKIENLQEQLRDKDKQLTNLKDRVKS-LQTDSSNTDTALATLEEALSEKERIIERL 600
Query: 95 MERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELE 154
E+ E++ + + E ++ K D KEK + L ++E ES + +
Sbjct: 601 KEQR---ERDDRERLEEIESFRKENK-DLKEKVNA-----LQAELTEKESSLIDLKEHAS 651
Query: 155 GLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR----LLDNDELSPEQVNDVKDLLE 210
L G R +L LE +I + K KLE L+ + D+ ++PE + +K L +
Sbjct: 652 SLA-SAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDK 710
Query: 211 DYVERNQDDFEEFSDVDELYHLL 233
+ + + ++VD L +L
Sbjct: 711 EASYYRDECGKAQAEVDRLLEIL 733
>UNIPROTKB|E2QV06 [details] [associations]
symbol:CGNL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016459 "myosin complex" evidence=IEA]
[GO:0003774 "motor activity" evidence=IEA] InterPro:IPR002928
Pfam:PF01576 GO:GO:0003774 GO:GO:0016459
GeneTree:ENSGT00630000089684 CTD:84952 OMA:VLNFQRH
EMBL:AAEX03016165 EMBL:AAEX03016166 EMBL:AAEX03016167
RefSeq:XP_544699.4 Ensembl:ENSCAFT00000025797 GeneID:487574
KEGG:cfa:487574 Uniprot:E2QV06
Length = 1295
Score = 125 (49.1 bits), Expect = 0.00091, P = 0.00091
Identities = 48/200 (24%), Positives = 103/200 (51%)
Query: 11 IDRVLKKVQ-EGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69
+D+ ++K+Q E D+ + ++V + NQ ++++ ++E+ ++QR Q+K ++
Sbjct: 940 LDKTIEKLQKEMADIVEV--SRVSTLELQNQLDEYKEKNRRELAEMQR---QLKE--KTL 992
Query: 70 EIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKE-KAK 128
E + +++A L D +L+E E+ ++ + E TK ++ L Q K E +AK
Sbjct: 993 EAEKSRLTA---MKLQDEMRLMEEELRDYQRAQDEALTK---RQLLEQTLKDLEYELEAK 1046
Query: 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELI 188
S +D + LV ++E ++ E ELE R+T + + ++ +++ +
Sbjct: 1047 SHLKDDRSRLVKQMEDKVSQLEMELEEER-NNSDLLSERITRSREQMEQMRSELLQERAL 1105
Query: 189 LRLLDNDELSPEQVNDVKDL 208
+ L+ D++S E+ N KDL
Sbjct: 1106 KQDLECDKISLERQN--KDL 1123
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.128 0.363 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 873 812 0.00099 121 3 11 23 0.48 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 53
No. of states in DFA: 621 (66 KB)
Total size of DFA: 381 KB (2187 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 100.76u 0.16s 100.92t Elapsed: 00:00:07
Total cpu time: 100.79u 0.16s 100.95t Elapsed: 00:00:07
Start: Tue May 21 14:17:01 2013 End: Tue May 21 14:17:08 2013