Query 002856
Match_columns 873
No_of_seqs 271 out of 455
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 12:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2150 CCR4-NOT transcription 100.0 4E-117 8E-122 982.8 43.3 222 2-249 1-222 (575)
2 COG5665 NOT5 CCR4-NOT transcri 100.0 3.7E-95 8E-100 773.4 30.8 197 12-234 1-197 (548)
3 PF04065 Not3: Not1 N-terminal 100.0 1.8E-87 3.9E-92 690.7 25.1 228 2-238 1-233 (233)
4 PF04153 NOT2_3_5: NOT2 / NOT3 100.0 8.8E-37 1.9E-41 292.1 10.2 126 728-868 1-134 (134)
5 COG5601 CDC36 General negative 100.0 8.1E-34 1.8E-38 272.9 2.3 155 692-868 10-172 (172)
6 KOG2151 Predicted transcriptio 99.6 8.7E-16 1.9E-20 164.4 3.4 106 683-808 202-312 (312)
7 KOG2151 Predicted transcriptio 99.3 8.9E-13 1.9E-17 141.6 5.4 133 700-869 37-175 (312)
8 cd07674 F-BAR_FCHO1 The F-BAR 95.7 0.11 2.4E-06 55.5 12.0 173 24-219 57-250 (261)
9 PHA02562 46 endonuclease subun 95.3 0.81 1.8E-05 53.0 18.2 139 5-157 177-326 (562)
10 PF12128 DUF3584: Protein of u 94.0 0.86 1.9E-05 58.5 15.3 133 38-194 731-876 (1201)
11 PF08317 Spc7: Spc7 kinetochor 94.0 4.8 0.0001 44.7 19.2 46 166-213 244-289 (325)
12 TIGR03185 DNA_S_dndD DNA sulfu 93.4 2.3 5.1E-05 51.1 16.6 32 38-69 261-292 (650)
13 PF00038 Filament: Intermediat 93.3 1.6 3.5E-05 47.2 13.8 136 47-193 128-275 (312)
14 KOG0996 Structural maintenance 92.7 2.6 5.7E-05 53.7 15.9 146 38-198 819-967 (1293)
15 cd07673 F-BAR_FCHO2 The F-BAR 92.4 1.1 2.4E-05 48.6 11.0 173 24-219 64-257 (269)
16 PRK04778 septation ring format 91.9 7 0.00015 46.6 17.8 34 181-214 453-490 (569)
17 KOG4438 Centromere-associated 91.9 7.7 0.00017 45.1 17.2 97 80-197 263-361 (446)
18 TIGR02169 SMC_prok_A chromosom 91.8 3.9 8.5E-05 51.0 16.3 17 45-61 193-209 (1164)
19 cd07648 F-BAR_FCHO The F-BAR ( 91.6 1.5 3.2E-05 46.8 10.7 88 131-218 162-249 (261)
20 PRK04863 mukB cell division pr 91.5 14 0.00029 49.2 21.0 52 166-217 404-455 (1486)
21 COG1196 Smc Chromosome segrega 91.1 1.9 4.1E-05 55.3 12.8 12 222-233 971-982 (1163)
22 PF03357 Snf7: Snf7; InterPro 90.9 0.98 2.1E-05 44.1 8.0 88 130-218 1-122 (171)
23 PF10168 Nup88: Nuclear pore c 90.7 4.6 0.0001 49.7 15.0 160 14-190 537-709 (717)
24 cd00632 Prefoldin_beta Prefold 90.7 3.1 6.7E-05 38.9 10.7 82 50-156 3-89 (105)
25 KOG0250 DNA repair protein RAD 90.2 5.4 0.00012 50.7 15.0 62 125-186 396-463 (1074)
26 KOG0963 Transcription factor/C 90.1 3.9 8.5E-05 49.2 13.2 31 7-37 71-101 (629)
27 KOG0996 Structural maintenance 89.8 6.8 0.00015 50.2 15.4 163 6-197 444-615 (1293)
28 KOG2911 Uncharacterized conser 89.5 0.68 1.5E-05 53.3 6.3 84 131-214 234-351 (439)
29 PHA00425 DNA packaging protein 88.6 1.1 2.5E-05 41.2 5.9 67 142-218 6-76 (88)
30 COG1196 Smc Chromosome segrega 88.4 9.4 0.0002 49.2 15.9 31 166-196 870-900 (1163)
31 cd07653 F-BAR_CIP4-like The F- 88.2 20 0.00043 37.8 15.8 45 7-57 3-47 (251)
32 cd07647 F-BAR_PSTPIP The F-BAR 88.1 8.9 0.00019 40.7 13.1 47 181-232 190-236 (239)
33 PRK02224 chromosome segregatio 87.9 27 0.00059 43.2 19.0 27 167-193 420-446 (880)
34 PHA02562 46 endonuclease subun 87.9 29 0.00063 40.4 18.3 23 136-158 350-372 (562)
35 PF08317 Spc7: Spc7 kinetochor 87.8 19 0.00042 40.0 16.0 103 12-157 162-264 (325)
36 TIGR02338 gimC_beta prefoldin, 87.6 9 0.0002 36.3 11.5 84 47-155 4-92 (110)
37 PRK02224 chromosome segregatio 87.5 5.6 0.00012 49.0 12.8 15 135-149 625-639 (880)
38 PF07139 DUF1387: Protein of u 87.4 8 0.00017 43.3 12.5 112 41-217 148-260 (302)
39 TIGR02169 SMC_prok_A chromosom 87.2 8.7 0.00019 48.0 14.3 9 182-190 960-968 (1164)
40 PRK03918 chromosome segregatio 87.1 22 0.00048 43.8 17.5 32 126-157 448-479 (880)
41 PTZ00464 SNF-7-like protein; P 86.8 2.8 6E-05 44.5 8.4 90 129-218 17-142 (211)
42 PF11123 DNA_Packaging_2: DNA 86.6 2 4.4E-05 39.3 6.2 67 142-218 4-74 (82)
43 KOG1029 Endocytic adaptor prot 86.4 17 0.00036 45.2 15.3 55 6-60 324-382 (1118)
44 COG0419 SbcC ATPase involved i 86.2 12 0.00027 46.8 14.9 23 132-154 649-671 (908)
45 PRK11637 AmiB activator; Provi 85.7 26 0.00057 40.2 16.1 18 82-99 117-134 (428)
46 PF03962 Mnd1: Mnd1 family; I 85.4 8.4 0.00018 40.1 10.9 99 112-215 41-150 (188)
47 KOG1899 LAR transmembrane tyro 85.3 41 0.00089 41.2 17.5 95 123-218 192-292 (861)
48 PRK09343 prefoldin subunit bet 85.1 16 0.00034 35.5 12.0 44 44-106 5-48 (121)
49 PF04799 Fzo_mitofusin: fzo-li 85.1 2.1 4.5E-05 44.3 6.3 63 6-100 102-165 (171)
50 PRK03918 chromosome segregatio 84.9 21 0.00045 44.0 15.8 18 176-193 365-382 (880)
51 KOG0933 Structural maintenance 84.7 45 0.00098 42.8 18.1 79 138-216 407-502 (1174)
52 PRK01156 chromosome segregatio 84.6 39 0.00085 42.1 18.0 45 113-157 452-496 (895)
53 KOG4674 Uncharacterized conser 84.5 4.8 0.0001 53.6 10.5 103 1-110 1277-1393(1822)
54 PF04156 IncA: IncA protein; 84.1 47 0.001 33.7 15.5 21 82-102 130-150 (191)
55 KOG0161 Myosin class II heavy 83.8 11 0.00023 51.1 13.3 47 3-49 1323-1371(1930)
56 PF05833 FbpA: Fibronectin-bin 83.5 0.45 9.6E-06 54.1 0.8 41 168-209 396-436 (455)
57 COG4942 Membrane-bound metallo 83.4 23 0.00049 41.4 14.2 126 6-157 42-174 (420)
58 PF13166 AAA_13: AAA domain 83.3 39 0.00084 40.8 16.8 27 130-156 370-396 (712)
59 PF09745 DUF2040: Coiled-coil 82.7 7.4 0.00016 38.5 8.7 98 6-109 2-124 (127)
60 TIGR00606 rad50 rad50. This fa 82.6 24 0.00051 46.3 15.6 46 41-95 607-652 (1311)
61 KOG0250 DNA repair protein RAD 82.6 43 0.00092 43.2 17.0 80 24-112 215-311 (1074)
62 smart00787 Spc7 Spc7 kinetocho 82.6 91 0.002 35.1 18.8 25 13-37 74-98 (312)
63 PF07888 CALCOCO1: Calcium bin 82.5 20 0.00043 43.2 13.6 62 6-69 140-201 (546)
64 PTZ00446 vacuolar sorting prot 82.5 7.9 0.00017 40.7 9.3 24 194-217 124-147 (191)
65 PLN03229 acetyl-coenzyme A car 82.4 41 0.00089 41.9 16.4 32 141-176 670-705 (762)
66 PF15619 Lebercilin: Ciliary p 82.1 18 0.0004 37.9 11.9 99 9-116 57-161 (194)
67 PRK05771 V-type ATP synthase s 82.1 56 0.0012 39.6 17.5 24 45-68 109-132 (646)
68 PTZ00464 SNF-7-like protein; P 82.0 49 0.0011 35.4 15.1 36 56-97 42-79 (211)
69 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.0 42 0.00091 32.8 13.6 122 4-156 5-131 (132)
70 KOG0995 Centromere-associated 81.9 13 0.00029 44.6 11.8 65 82-148 262-326 (581)
71 cd07598 BAR_FAM92 The Bin/Amph 81.4 23 0.0005 37.6 12.4 135 5-152 21-168 (211)
72 cd00176 SPEC Spectrin repeats, 81.3 35 0.00077 33.1 12.9 23 132-154 74-96 (213)
73 cd07672 F-BAR_PSTPIP2 The F-BA 80.8 52 0.0011 35.5 15.0 19 196-214 204-222 (240)
74 KOG0161 Myosin class II heavy 80.7 21 0.00046 48.5 14.2 64 129-192 1054-1130(1930)
75 PF12729 4HB_MCP_1: Four helix 80.5 25 0.00055 33.0 11.3 36 35-70 71-106 (181)
76 PRK03947 prefoldin subunit alp 80.3 9.1 0.0002 37.3 8.4 32 125-156 89-120 (140)
77 PRK01156 chromosome segregatio 80.2 43 0.00093 41.8 16.1 22 176-197 729-750 (895)
78 PRK11637 AmiB activator; Provi 80.1 28 0.0006 40.0 13.5 24 82-105 110-133 (428)
79 COG1293 Predicted RNA-binding 79.7 14 0.00031 44.3 11.4 81 24-105 266-347 (564)
80 PF03148 Tektin: Tektin family 79.5 77 0.0017 36.4 16.6 91 5-103 56-169 (384)
81 PF12128 DUF3584: Protein of u 79.3 31 0.00067 44.9 14.9 27 6-32 604-630 (1201)
82 PF07106 TBPIP: Tat binding pr 79.2 9.5 0.00021 38.4 8.4 106 103-214 46-159 (169)
83 PF10174 Cast: RIM-binding pro 79.2 37 0.00081 42.5 14.9 43 166-208 548-598 (775)
84 smart00503 SynN Syntaxin N-ter 79.1 23 0.0005 32.6 10.3 103 6-108 8-115 (117)
85 KOG0612 Rho-associated, coiled 79.1 28 0.0006 45.3 13.8 91 47-157 641-734 (1317)
86 PF14662 CCDC155: Coiled-coil 79.1 74 0.0016 33.9 14.9 41 3-56 16-56 (193)
87 PF08429 PLU-1: PLU-1-like pro 78.9 39 0.00084 37.2 13.7 80 10-95 104-193 (335)
88 cd07675 F-BAR_FNBP1L The F-BAR 78.9 79 0.0017 34.7 15.7 80 8-99 4-133 (252)
89 KOG0624 dsRNA-activated protei 78.4 29 0.00062 40.2 12.5 22 52-73 152-173 (504)
90 COG1579 Zn-ribbon protein, pos 78.4 31 0.00068 37.6 12.4 49 5-62 34-82 (239)
91 TIGR02680 conserved hypothetic 78.3 51 0.0011 43.7 16.5 103 14-156 221-323 (1353)
92 PRK09039 hypothetical protein; 78.3 62 0.0014 36.6 15.3 46 130-176 137-182 (343)
93 KOG4673 Transcription factor T 77.4 23 0.0005 43.6 11.9 105 34-156 397-507 (961)
94 PF01544 CorA: CorA-like Mg2+ 77.3 11 0.00024 39.4 8.6 80 131-215 119-207 (292)
95 KOG0810 SNARE protein Syntaxin 77.1 93 0.002 35.0 15.9 183 10-215 44-245 (297)
96 TIGR00606 rad50 rad50. This fa 77.0 39 0.00085 44.3 15.0 17 12-28 771-787 (1311)
97 PF03962 Mnd1: Mnd1 family; I 76.7 33 0.00071 35.8 11.6 65 135-203 108-177 (188)
98 PF11932 DUF3450: Protein of u 76.5 1.1E+02 0.0025 32.7 16.6 28 181-208 129-157 (251)
99 cd00890 Prefoldin Prefoldin is 76.5 23 0.00049 33.4 9.7 32 125-156 82-113 (129)
100 PF15272 BBP1_C: Spindle pole 76.3 13 0.00028 39.4 8.6 44 13-60 19-65 (196)
101 PF01496 V_ATPase_I: V-type AT 76.2 10 0.00022 46.6 9.2 54 14-69 75-129 (759)
102 KOG0994 Extracellular matrix g 76.2 82 0.0018 41.2 16.4 17 126-142 1693-1709(1758)
103 TIGR02168 SMC_prok_B chromosom 76.2 52 0.0011 41.2 15.2 16 46-61 196-211 (1179)
104 PRK04778 septation ring format 75.8 1.8E+02 0.004 35.0 19.0 59 47-115 253-312 (569)
105 TIGR02168 SMC_prok_B chromosom 75.6 1.1E+02 0.0023 38.6 17.6 26 167-192 434-459 (1179)
106 PF03938 OmpH: Outer membrane 74.9 32 0.0007 33.7 10.6 61 5-65 39-102 (158)
107 PF07888 CALCOCO1: Calcium bin 74.5 1.2E+02 0.0026 36.9 16.7 9 179-187 326-334 (546)
108 PF06160 EzrA: Septation ring 74.5 1.3E+02 0.0028 36.2 17.3 84 47-157 249-333 (560)
109 PF15070 GOLGA2L5: Putative go 74.5 26 0.00055 42.8 11.6 66 135-201 85-157 (617)
110 PF06008 Laminin_I: Laminin Do 74.5 65 0.0014 34.7 13.6 184 6-214 56-244 (264)
111 TIGR03185 DNA_S_dndD DNA sulfu 72.6 78 0.0017 38.5 15.1 42 7-48 389-430 (650)
112 PF04740 LXG: LXG domain of WX 72.5 48 0.0011 33.8 11.6 38 38-75 9-47 (204)
113 PF09726 Macoilin: Transmembra 72.2 20 0.00044 44.2 10.1 49 47-95 457-511 (697)
114 COG3096 MukB Uncharacterized p 71.4 13 0.00028 46.1 8.0 139 51-214 807-948 (1480)
115 PF06730 FAM92: FAM92 protein; 71.4 1.3E+02 0.0028 32.6 14.7 44 134-191 157-205 (219)
116 cd07619 BAR_Rich2 The Bin/Amph 71.3 1.1E+02 0.0024 33.7 14.4 18 10-27 85-102 (248)
117 PF13514 AAA_27: AAA domain 70.7 1.2E+02 0.0026 39.3 16.8 59 5-63 133-198 (1111)
118 KOG2117 Uncharacterized conser 70.6 14 0.0003 42.4 7.6 91 1-97 44-162 (379)
119 TIGR00293 prefoldin, archaeal 70.5 15 0.00032 35.1 6.9 32 125-156 81-112 (126)
120 KOG0933 Structural maintenance 70.5 1.4E+02 0.003 38.7 16.5 61 46-106 711-779 (1174)
121 PRK09039 hypothetical protein; 70.4 55 0.0012 37.0 12.4 41 167-209 159-199 (343)
122 KOG0240 Kinesin (SMY1 subfamil 69.6 41 0.00088 40.8 11.4 29 46-74 355-383 (607)
123 PF05597 Phasin: Poly(hydroxya 69.5 78 0.0017 31.7 11.8 23 138-160 110-132 (132)
124 KOG2129 Uncharacterized conser 69.3 1.3E+02 0.0029 35.5 14.9 17 4-20 72-88 (552)
125 PF03999 MAP65_ASE1: Microtubu 69.2 17 0.00036 44.0 8.5 127 4-153 266-411 (619)
126 KOG4460 Nuclear pore complex, 69.1 2.7E+02 0.0059 34.2 17.7 41 13-61 559-599 (741)
127 COG0419 SbcC ATPase involved i 69.1 1.4E+02 0.0031 37.8 16.7 20 139-158 690-709 (908)
128 COG1283 NptA Na+/phosphate sym 69.0 2.1E+02 0.0045 34.8 17.1 37 173-209 443-480 (533)
129 PLN03229 acetyl-coenzyme A car 68.7 3.2E+02 0.007 34.6 19.5 10 54-63 536-545 (762)
130 KOG4643 Uncharacterized coiled 67.7 54 0.0012 42.1 12.3 75 12-98 382-462 (1195)
131 KOG0976 Rho/Rac1-interacting s 67.3 41 0.00089 42.2 11.0 113 38-158 286-407 (1265)
132 cd07655 F-BAR_PACSIN The F-BAR 67.3 30 0.00064 37.4 9.1 41 13-53 48-92 (258)
133 KOG0994 Extracellular matrix g 67.0 79 0.0017 41.4 13.5 62 6-69 1426-1487(1758)
134 KOG2685 Cystoskeletal protein 66.5 2.1E+02 0.0046 33.7 15.9 160 9-195 87-307 (421)
135 cd07671 F-BAR_PSTPIP1 The F-BA 66.4 75 0.0016 34.4 11.9 27 38-64 73-99 (242)
136 PF09789 DUF2353: Uncharacteri 66.2 2.4E+02 0.0053 32.2 18.4 20 137-156 133-152 (319)
137 PRK04863 mukB cell division pr 66.0 2.2E+02 0.0048 38.6 18.0 18 198-215 552-569 (1486)
138 cd07653 F-BAR_CIP4-like The F- 65.6 48 0.001 35.0 10.2 31 5-35 115-145 (251)
139 KOG0962 DNA repair protein RAD 65.5 1.6E+02 0.0034 39.1 16.1 63 4-68 887-949 (1294)
140 cd00179 SynN Syntaxin N-termin 65.3 57 0.0012 31.6 9.9 96 7-108 7-114 (151)
141 PF07798 DUF1640: Protein of u 65.3 37 0.0008 34.7 8.9 16 125-140 148-163 (177)
142 PF10267 Tmemb_cc2: Predicted 65.0 1.2E+02 0.0027 35.3 13.9 22 165-186 297-318 (395)
143 COG5185 HEC1 Protein involved 64.9 37 0.0008 40.4 9.7 62 84-147 300-361 (622)
144 smart00502 BBC B-Box C-termina 64.9 1E+02 0.0022 28.2 11.0 32 125-156 38-69 (127)
145 KOG1029 Endocytic adaptor prot 64.6 1.2E+02 0.0025 38.4 14.0 56 103-158 514-570 (1118)
146 smart00806 AIP3 Actin interact 64.4 1.4E+02 0.0031 35.2 14.2 58 3-60 211-274 (426)
147 PF09726 Macoilin: Transmembra 64.3 81 0.0018 39.2 13.0 50 41-98 420-476 (697)
148 KOG4286 Dystrophin-like protei 64.2 30 0.00065 43.0 9.1 145 38-191 88-252 (966)
149 PF06657 Cep57_MT_bd: Centroso 64.2 37 0.00081 31.0 7.8 56 9-64 13-75 (79)
150 cd07671 F-BAR_PSTPIP1 The F-BA 64.0 67 0.0015 34.7 11.0 78 5-97 109-196 (242)
151 PF05483 SCP-1: Synaptonemal c 63.5 48 0.001 41.0 10.6 129 54-185 556-719 (786)
152 cd07598 BAR_FAM92 The Bin/Amph 63.3 37 0.00079 36.1 8.7 25 8-32 78-102 (211)
153 COG3883 Uncharacterized protei 63.2 2.4E+02 0.0053 31.5 15.1 54 135-196 139-192 (265)
154 PF09787 Golgin_A5: Golgin sub 63.2 3.2E+02 0.007 32.6 18.6 116 83-214 225-351 (511)
155 KOG0804 Cytoplasmic Zn-finger 63.1 33 0.00071 40.5 8.8 36 79-115 325-360 (493)
156 PF09755 DUF2046: Uncharacteri 63.0 74 0.0016 36.1 11.3 81 138-218 85-177 (310)
157 KOG2150 CCR4-NOT transcription 63.0 3.3 7.2E-05 49.4 1.1 144 714-870 431-574 (575)
158 PF14362 DUF4407: Domain of un 62.6 98 0.0021 33.8 12.1 63 84-154 151-213 (301)
159 KOG0804 Cytoplasmic Zn-finger 62.5 27 0.00059 41.1 8.1 31 16-46 328-358 (493)
160 KOG4364 Chromatin assembly fac 62.2 30 0.00064 42.6 8.5 57 38-103 291-347 (811)
161 PF08385 DHC_N1: Dynein heavy 62.0 3.2E+02 0.0069 32.1 17.0 65 125-189 345-419 (579)
162 PRK10780 periplasmic chaperone 62.0 70 0.0015 32.3 10.1 90 6-111 43-139 (165)
163 cd07681 F-BAR_PACSIN3 The F-BA 61.9 1.9E+02 0.0041 32.0 14.0 41 11-57 7-47 (258)
164 PF13949 ALIX_LYPXL_bnd: ALIX 61.1 1.8E+02 0.004 31.2 13.7 78 20-101 22-103 (296)
165 PF05667 DUF812: Protein of un 60.9 49 0.0011 40.4 10.2 77 127-204 325-401 (594)
166 cd07651 F-BAR_PombeCdc15_like 60.5 38 0.00082 35.8 8.3 47 181-232 187-233 (236)
167 PF09789 DUF2353: Uncharacteri 60.3 1.7E+02 0.0036 33.5 13.5 135 48-213 14-167 (319)
168 PF10186 Atg14: UV radiation r 60.2 1.9E+02 0.0041 30.7 13.5 18 6-23 31-48 (302)
169 PF12729 4HB_MCP_1: Four helix 59.5 1.6E+02 0.0034 27.7 12.7 56 11-67 77-133 (181)
170 PF06160 EzrA: Septation ring 58.7 4E+02 0.0088 32.2 19.6 32 183-214 451-482 (560)
171 cd07658 F-BAR_NOSTRIN The F-BA 58.4 2.6E+02 0.0056 30.1 14.1 44 16-59 51-97 (239)
172 PTZ00332 paraflagellar rod pro 58.2 2.4E+02 0.0051 34.2 14.6 72 137-216 324-399 (589)
173 KOG0964 Structural maintenance 57.9 2.7E+02 0.0059 36.3 15.7 85 126-210 428-520 (1200)
174 PF14735 HAUS4: HAUS augmin-li 57.5 1.6E+02 0.0034 32.2 12.4 89 5-97 39-128 (238)
175 KOG0612 Rho-associated, coiled 57.3 65 0.0014 42.1 10.7 24 133-156 619-642 (1317)
176 PTZ00108 DNA topoisomerase 2-l 57.1 1.1E+02 0.0023 41.0 12.8 109 41-157 997-1122(1388)
177 PF07851 TMPIT: TMPIT-like pro 56.9 75 0.0016 36.3 10.2 56 46-108 39-94 (330)
178 TIGR01612 235kDa-fam reticuloc 56.7 3.2E+02 0.0069 38.9 16.8 62 177-238 1295-1360(2757)
179 TIGR02449 conserved hypothetic 56.6 99 0.0021 27.8 8.8 40 58-105 26-65 (65)
180 TIGR01843 type_I_hlyD type I s 56.4 66 0.0014 35.7 9.7 7 111-117 188-194 (423)
181 KOG0982 Centrosomal protein Nu 56.4 2E+02 0.0044 34.2 13.5 23 41-63 327-349 (502)
182 PRK00286 xseA exodeoxyribonucl 55.7 3.5E+02 0.0075 31.4 15.5 41 14-62 258-298 (438)
183 COG2882 FliJ Flagellar biosynt 54.6 1.5E+02 0.0033 30.3 10.9 124 41-198 14-138 (148)
184 PTZ00473 Plasmodium Vir superf 54.3 5.3 0.00011 46.1 0.8 129 20-182 75-215 (420)
185 PF11166 DUF2951: Protein of u 53.8 36 0.00077 32.6 5.9 57 9-68 21-78 (98)
186 KOG0977 Nuclear envelope prote 53.4 1.2E+02 0.0026 36.9 11.5 28 125-152 263-290 (546)
187 KOG0980 Actin-binding protein 53.0 2.1E+02 0.0046 36.7 13.7 67 131-197 467-540 (980)
188 cd07673 F-BAR_FCHO2 The F-BAR 52.8 64 0.0014 35.3 8.6 82 7-93 155-240 (269)
189 PF13949 ALIX_LYPXL_bnd: ALIX 52.6 3.3E+02 0.0071 29.3 18.6 30 4-33 79-108 (296)
190 KOG0979 Structural maintenance 52.6 3.6E+02 0.0079 35.2 15.7 95 38-156 705-799 (1072)
191 cd07600 BAR_Gvp36 The Bin/Amph 52.3 2.5E+02 0.0054 30.7 12.9 43 10-59 111-153 (242)
192 PF05791 Bacillus_HBL: Bacillu 52.0 2.2E+02 0.0047 29.6 11.9 73 14-101 78-150 (184)
193 COG2433 Uncharacterized conser 51.8 66 0.0014 39.4 9.1 146 34-189 337-504 (652)
194 COG4911 Uncharacterized conser 51.8 34 0.00073 33.5 5.6 67 129-202 14-81 (123)
195 PF14523 Syntaxin_2: Syntaxin- 51.7 25 0.00054 32.0 4.6 58 6-63 37-95 (102)
196 PF15188 CCDC-167: Coiled-coil 51.5 63 0.0014 30.3 7.1 44 7-50 3-47 (85)
197 cd07593 BAR_MUG137_fungi The B 51.5 1.2E+02 0.0026 32.5 10.2 88 9-105 114-201 (215)
198 PF00435 Spectrin: Spectrin re 51.1 10 0.00022 32.8 1.9 51 52-109 3-54 (105)
199 cd07627 BAR_Vps5p The Bin/Amph 51.1 2.6E+02 0.0057 29.4 12.5 98 10-151 95-212 (216)
200 PF12297 EVC2_like: Ellis van 51.0 4.4E+02 0.0095 31.4 15.1 146 10-196 203-352 (429)
201 TIGR00634 recN DNA repair prot 50.3 5E+02 0.011 31.3 16.1 23 129-151 276-298 (563)
202 PF13166 AAA_13: AAA domain 50.2 5.5E+02 0.012 31.2 17.2 17 171-187 436-452 (712)
203 TIGR00634 recN DNA repair prot 50.2 4.3E+02 0.0093 31.8 15.6 17 19-35 157-173 (563)
204 COG1340 Uncharacterized archae 49.9 4.2E+02 0.0091 30.1 14.3 25 182-206 264-289 (294)
205 PF00509 Hemagglutinin: Haemag 49.9 2.6 5.5E-05 50.1 -2.6 55 165-219 402-460 (550)
206 PF05082 Rop-like: Rop-like; 49.6 18 0.00039 32.5 3.1 20 46-65 5-24 (66)
207 KOG0681 Actin-related protein 49.3 86 0.0019 38.2 9.4 43 17-61 249-291 (645)
208 cd07610 FCH_F-BAR The Extended 49.3 2.8E+02 0.0061 27.7 17.0 40 11-56 2-41 (191)
209 PTZ00009 heat shock 70 kDa pro 49.1 75 0.0016 38.8 9.3 55 41-98 552-612 (653)
210 PF13863 DUF4200: Domain of un 49.1 1.3E+02 0.0028 28.6 9.1 24 83-106 15-38 (126)
211 PF08537 NBP1: Fungal Nap bind 49.1 2E+02 0.0044 32.9 11.8 53 130-200 175-227 (323)
212 PF14282 FlxA: FlxA-like prote 49.1 31 0.00066 32.9 4.9 56 136-191 18-76 (106)
213 KOG0979 Structural maintenance 49.1 5.3E+02 0.011 33.8 16.3 26 82-107 248-273 (1072)
214 KOG1850 Myosin-like coiled-coi 48.6 4.9E+02 0.011 30.2 15.1 36 172-207 291-327 (391)
215 PF03114 BAR: BAR domain; Int 48.6 96 0.0021 30.9 8.6 87 9-102 131-218 (229)
216 PF15397 DUF4618: Domain of un 48.4 2.3E+02 0.0049 31.6 11.8 27 131-157 194-220 (258)
217 PF10211 Ax_dynein_light: Axon 48.3 3.3E+02 0.0073 28.5 12.7 12 6-17 37-48 (189)
218 PF15294 Leu_zip: Leucine zipp 48.3 3.7E+02 0.008 30.3 13.5 132 9-156 11-151 (278)
219 cd07651 F-BAR_PombeCdc15_like 48.0 1.1E+02 0.0023 32.5 9.2 28 6-33 111-138 (236)
220 KOG3565 Cdc42-interacting prot 48.0 2.1E+02 0.0046 35.4 12.7 48 4-57 9-56 (640)
221 smart00126 IL6 Interleukin-6 h 47.9 84 0.0018 32.4 8.0 53 12-66 53-106 (154)
222 PF15005 IZUMO: Izumo sperm-eg 47.7 49 0.0011 34.2 6.4 88 11-121 34-131 (160)
223 PF06798 PrkA: PrkA serine pro 47.5 4.2E+02 0.0092 29.1 15.9 44 166-215 191-236 (254)
224 PF00804 Syntaxin: Syntaxin; 47.0 2.1E+02 0.0045 25.4 10.6 59 9-68 10-71 (103)
225 cd09238 V_Alix_like_1 Protein- 46.8 3.7E+02 0.0079 30.4 13.6 16 199-214 322-337 (339)
226 PF07889 DUF1664: Protein of u 46.6 74 0.0016 31.7 7.2 69 131-210 37-106 (126)
227 PRK10865 protein disaggregatio 46.5 4.3E+02 0.0094 33.7 15.4 51 46-106 413-463 (857)
228 KOG0978 E3 ubiquitin ligase in 45.7 7.3E+02 0.016 31.4 16.7 137 52-214 502-642 (698)
229 PF13514 AAA_27: AAA domain 45.6 5.2E+02 0.011 33.8 16.3 24 52-75 821-844 (1111)
230 PF14817 HAUS5: HAUS augmin-li 45.5 5.7E+02 0.012 31.9 15.7 26 83-108 146-171 (632)
231 KOG0971 Microtubule-associated 45.4 7.3E+02 0.016 32.5 16.5 25 132-156 327-351 (1243)
232 PF14182 YgaB: YgaB-like prote 45.3 1.1E+02 0.0024 28.5 7.5 31 52-97 39-69 (79)
233 PRK09793 methyl-accepting prot 45.3 1.6E+02 0.0036 34.6 11.1 65 9-73 81-146 (533)
234 KOG3850 Predicted membrane pro 45.2 76 0.0016 37.0 7.9 26 165-190 345-370 (455)
235 PF06810 Phage_GP20: Phage min 44.8 63 0.0014 32.9 6.6 35 186-220 100-136 (155)
236 KOG4364 Chromatin assembly fac 44.8 4.8E+02 0.01 32.9 14.6 28 159-186 352-379 (811)
237 PF04740 LXG: LXG domain of WX 44.7 1.4E+02 0.0031 30.4 9.3 64 42-105 98-168 (204)
238 cd09236 V_AnPalA_UmRIM20_like 44.6 4.1E+02 0.0088 30.2 13.6 16 199-214 336-351 (353)
239 COG0216 PrfA Protein chain rel 44.6 2E+02 0.0042 33.4 10.9 99 14-157 5-103 (363)
240 PF04108 APG17: Autophagy prot 44.5 3E+02 0.0065 32.0 12.8 125 9-152 251-382 (412)
241 KOG0247 Kinesin-like protein [ 44.3 4.2E+02 0.009 33.7 14.2 35 83-117 542-576 (809)
242 KOG4677 Golgi integral membran 44.3 4.6E+02 0.01 31.6 13.9 36 9-44 189-229 (554)
243 KOG0579 Ste20-like serine/thre 43.6 5.7E+02 0.012 32.6 14.9 60 4-63 799-870 (1187)
244 PF01540 Lipoprotein_7: Adhesi 43.5 5E+02 0.011 29.5 13.4 67 172-240 251-320 (353)
245 cd07594 BAR_Endophilin_B The B 43.5 1.8E+02 0.0038 31.6 10.0 90 9-105 133-222 (229)
246 TIGR00255 conserved hypothetic 43.4 2.3E+02 0.005 31.8 11.2 82 41-155 152-238 (291)
247 PRK05287 hypothetical protein; 43.4 42 0.00092 36.8 5.5 123 46-197 57-181 (250)
248 PF07072 DUF1342: Protein of u 43.3 33 0.00071 36.6 4.5 48 46-101 39-87 (211)
249 COG0598 CorA Mg2+ and Co2+ tra 43.1 93 0.002 34.5 8.2 63 131-196 148-210 (322)
250 PRK00409 recombination and DNA 43.1 5.7E+02 0.012 32.4 15.7 21 135-155 575-595 (782)
251 cd07599 BAR_Rvs167p The Bin/Am 42.8 2.5E+02 0.0053 29.4 10.8 27 42-68 5-31 (216)
252 KOG3771 Amphiphysin [Intracell 42.4 6.9E+02 0.015 30.1 26.7 29 5-33 4-40 (460)
253 cd07600 BAR_Gvp36 The Bin/Amph 42.4 1.6E+02 0.0034 32.3 9.5 89 9-105 147-235 (242)
254 PF15294 Leu_zip: Leucine zipp 42.3 3.2E+02 0.0069 30.8 11.9 98 48-156 130-227 (278)
255 PF04286 DUF445: Protein of un 42.1 4.9E+02 0.011 28.4 15.6 16 41-56 208-223 (367)
256 cd07610 FCH_F-BAR The Extended 41.9 3.7E+02 0.008 26.8 12.9 18 199-216 158-175 (191)
257 PRK07720 fliJ flagellar biosyn 41.8 3.5E+02 0.0076 26.5 11.7 115 40-188 13-128 (146)
258 PF02185 HR1: Hr1 repeat; Int 41.8 95 0.0021 27.1 6.5 59 6-69 5-63 (70)
259 PF09325 Vps5: Vps5 C terminal 41.7 4.2E+02 0.009 27.4 16.4 23 135-157 168-190 (236)
260 PF05622 HOOK: HOOK protein; 41.6 8.7 0.00019 47.0 0.0 51 142-192 457-507 (713)
261 PF06013 WXG100: Proteins of 1 41.5 2.1E+02 0.0047 24.0 8.6 64 129-192 10-74 (86)
262 cd07655 F-BAR_PACSIN The F-BAR 41.2 1.4E+02 0.0031 32.3 9.0 29 6-34 123-151 (258)
263 cd07605 I-BAR_IMD Inverse (I)- 41.1 1.8E+02 0.0039 31.4 9.6 65 85-159 74-141 (223)
264 KOG2391 Vacuolar sorting prote 41.1 1.1E+02 0.0023 35.3 8.2 18 83-100 215-232 (365)
265 PF11500 Cut12: Spindle pole b 41.0 78 0.0017 32.6 6.5 27 42-68 76-102 (152)
266 TIGR01843 type_I_hlyD type I s 40.7 3.5E+02 0.0076 30.1 12.3 24 41-64 83-106 (423)
267 PF09731 Mitofilin: Mitochondr 40.6 7.2E+02 0.016 29.8 18.1 19 178-197 408-426 (582)
268 TIGR02977 phageshock_pspA phag 40.6 4.7E+02 0.01 27.7 13.3 40 14-56 3-44 (219)
269 PF03980 Nnf1: Nnf1 ; InterPr 40.4 3.2E+02 0.0069 25.7 12.6 87 42-156 13-99 (109)
270 PF07851 TMPIT: TMPIT-like pro 40.4 35 0.00076 38.8 4.4 71 143-213 3-81 (330)
271 PF05622 HOOK: HOOK protein; 40.2 9.4 0.0002 46.7 0.0 20 136-155 362-381 (713)
272 cd07675 F-BAR_FNBP1L The F-BAR 39.9 1.6E+02 0.0035 32.5 9.1 34 3-36 114-147 (252)
273 KOG1655 Protein involved in va 39.9 1.6E+02 0.0034 31.8 8.7 35 184-218 108-144 (218)
274 cd07649 F-BAR_GAS7 The F-BAR ( 39.9 2.9E+02 0.0063 29.9 11.0 15 132-146 203-217 (233)
275 PF01920 Prefoldin_2: Prefoldi 39.8 85 0.0018 28.5 6.1 85 51-155 3-87 (106)
276 smart00806 AIP3 Actin interact 39.7 3.4E+02 0.0073 32.3 12.1 27 129-155 216-242 (426)
277 cd07664 BAR_SNX2 The Bin/Amphi 39.5 5.1E+02 0.011 28.2 12.7 17 83-99 181-197 (234)
278 cd07623 BAR_SNX1_2 The Bin/Amp 39.2 4.4E+02 0.0096 28.0 12.1 106 1-151 108-218 (224)
279 COG3352 FlaC Putative archaeal 39.2 2.7E+02 0.006 28.9 10.0 94 89-195 44-137 (157)
280 TIGR02132 phaR_Bmeg polyhydrox 39.1 4E+02 0.0087 28.5 11.3 106 81-214 45-156 (189)
281 PF09597 IGR: IGR protein moti 38.9 51 0.0011 28.8 4.2 26 67-99 30-55 (57)
282 KOG3270 Uncharacterized conser 38.8 54 0.0012 36.0 5.3 66 17-100 89-154 (244)
283 cd00238 ERp29c ERp29 and ERp38 38.6 1.4E+02 0.0029 28.1 7.3 39 171-209 48-87 (93)
284 PF10146 zf-C4H2: Zinc finger- 38.6 5.2E+02 0.011 28.2 12.6 16 138-153 54-69 (230)
285 PF09731 Mitofilin: Mitochondr 38.5 7.7E+02 0.017 29.6 18.6 51 17-67 224-275 (582)
286 COG0497 RecN ATPase involved i 38.4 4.2E+02 0.0091 32.5 13.0 64 5-68 167-230 (557)
287 PF10168 Nup88: Nuclear pore c 38.2 5.6E+02 0.012 32.3 14.4 23 133-156 636-658 (717)
288 COG2433 Uncharacterized conser 38.1 5.6E+02 0.012 31.9 13.8 22 133-154 470-491 (652)
289 smart00787 Spc7 Spc7 kinetocho 38.1 6.5E+02 0.014 28.6 14.1 28 129-156 231-258 (312)
290 COG3937 Uncharacterized conser 38.1 2.7E+02 0.0059 27.4 9.3 93 11-153 5-106 (108)
291 PF05008 V-SNARE: Vesicle tran 38.0 1.9E+02 0.0041 25.4 7.8 54 10-63 22-78 (79)
292 PF10174 Cast: RIM-binding pro 37.7 9.9E+02 0.021 30.6 19.1 67 125-191 460-539 (775)
293 PF05565 Sipho_Gp157: Siphovir 37.6 2.1E+02 0.0045 29.2 9.0 17 83-99 65-81 (162)
294 PF04943 Pox_F11: Poxvirus F11 37.6 1.3E+02 0.0028 35.0 8.2 93 6-101 219-316 (366)
295 PF05010 TACC: Transforming ac 37.5 5.6E+02 0.012 27.6 15.5 28 41-68 60-87 (207)
296 KOG4429 Uncharacterized conser 37.5 3.3E+02 0.0071 31.2 11.0 27 166-192 140-166 (421)
297 PF04136 Sec34: Sec34-like fam 37.3 1.7E+02 0.0037 29.8 8.3 68 131-198 15-91 (157)
298 cd07676 F-BAR_FBP17 The F-BAR 37.3 2.2E+02 0.0047 31.2 9.6 34 4-37 116-149 (253)
299 cd07679 F-BAR_PACSIN2 The F-BA 37.3 6.3E+02 0.014 28.2 14.5 169 12-193 8-254 (258)
300 PF10368 YkyA: Putative cell-w 37.3 78 0.0017 33.5 6.2 60 47-116 83-143 (204)
301 cd09237 V_ScBro1_like Protein- 37.2 6.6E+02 0.014 28.4 15.7 45 170-214 306-354 (356)
302 PRK13182 racA polar chromosome 37.2 81 0.0018 32.8 6.2 48 57-107 96-143 (175)
303 PF00435 Spectrin: Spectrin re 37.1 2.5E+02 0.0055 24.1 8.4 42 168-211 43-84 (105)
304 KOG0978 E3 ubiquitin ligase in 37.0 9.2E+02 0.02 30.6 15.7 181 10-193 354-572 (698)
305 KOG0239 Kinesin (KAR3 subfamil 36.9 6E+02 0.013 31.8 14.3 28 38-65 209-242 (670)
306 cd07666 BAR_SNX7 The Bin/Amphi 36.9 6.1E+02 0.013 27.9 12.9 68 147-216 159-226 (243)
307 PF07200 Mod_r: Modifier of ru 36.8 1E+02 0.0023 30.3 6.6 29 80-108 53-81 (150)
308 KOG1656 Protein involved in gl 36.7 50 0.0011 35.5 4.6 131 129-259 27-193 (221)
309 PF02994 Transposase_22: L1 tr 36.7 68 0.0015 36.7 6.0 22 47-70 51-72 (370)
310 KOG2273 Membrane coat complex 36.6 2E+02 0.0044 33.8 10.0 38 183-220 431-469 (503)
311 COG4913 Uncharacterized protei 36.4 4.1E+02 0.0089 33.9 12.4 158 14-197 230-415 (1104)
312 cd07909 YciF YciF bacterial st 36.3 1.5E+02 0.0032 30.1 7.7 48 169-216 36-85 (147)
313 PF05008 V-SNARE: Vesicle tran 36.2 2.1E+02 0.0046 25.1 7.9 58 126-190 21-78 (79)
314 PF07083 DUF1351: Protein of u 36.1 5.6E+02 0.012 27.3 16.5 161 36-211 39-211 (215)
315 cd07634 BAR_GAP10-like The Bin 35.9 5.9E+02 0.013 27.5 13.2 66 146-215 120-188 (207)
316 KOG2072 Translation initiation 35.9 5.3E+02 0.011 33.3 13.4 38 87-124 620-665 (988)
317 PF04949 Transcrip_act: Transc 35.8 97 0.0021 32.0 6.2 58 83-156 46-103 (159)
318 KOG0243 Kinesin-like protein [ 35.5 6.2E+02 0.013 33.4 14.2 64 5-68 479-550 (1041)
319 PF06248 Zw10: Centromere/kine 35.4 5.1E+02 0.011 31.3 13.2 52 47-105 11-62 (593)
320 cd07647 F-BAR_PSTPIP The F-BAR 35.2 3.1E+02 0.0067 29.3 10.3 14 84-97 183-196 (239)
321 PF06810 Phage_GP20: Phage min 35.2 40 0.00087 34.2 3.6 10 195-204 95-104 (155)
322 PF06729 CENP-R: Kinetochore c 35.2 89 0.0019 31.7 5.7 57 9-65 59-124 (139)
323 PRK13415 flagella biosynthesis 35.2 80 0.0017 34.3 5.8 52 9-62 144-206 (219)
324 PF02601 Exonuc_VII_L: Exonucl 35.1 6.1E+02 0.013 28.0 12.8 17 176-192 257-273 (319)
325 KOG0163 Myosin class VI heavy 34.9 3.4E+02 0.0073 34.7 11.4 124 10-170 876-1010(1259)
326 PF00489 IL6: Interleukin-6/G- 34.9 1.5E+02 0.0032 30.1 7.5 53 11-65 52-105 (154)
327 PF13654 AAA_32: AAA domain; P 34.7 13 0.00028 44.2 0.0 65 47-119 88-157 (509)
328 PF09177 Syntaxin-6_N: Syntaxi 34.5 1.9E+02 0.0041 26.8 7.6 46 167-212 40-89 (97)
329 KOG3647 Predicted coiled-coil 34.5 7.2E+02 0.016 28.3 12.9 30 127-156 102-131 (338)
330 PF02609 Exonuc_VII_S: Exonucl 34.4 65 0.0014 27.0 4.1 37 180-216 3-40 (53)
331 PF03148 Tektin: Tektin family 34.2 6.6E+02 0.014 29.0 13.3 125 2-156 218-350 (384)
332 PF08397 IMD: IRSp53/MIM homol 34.1 3.2E+02 0.0069 28.8 10.1 25 83-115 62-86 (219)
333 PRK00409 recombination and DNA 34.0 5.3E+02 0.012 32.7 13.4 23 11-33 504-526 (782)
334 PRK04406 hypothetical protein; 34.0 1.4E+02 0.003 27.2 6.4 47 138-192 5-51 (75)
335 cd01111 HTH_MerD Helix-Turn-He 34.0 96 0.0021 29.4 5.6 29 38-66 79-107 (107)
336 TIGR02231 conserved hypothetic 33.9 5.7E+02 0.012 30.4 13.1 23 171-193 150-172 (525)
337 PF10018 Med4: Vitamin-D-recep 33.8 1.8E+02 0.0039 30.2 8.0 55 10-66 9-63 (188)
338 cd00089 HR1 Protein kinase C-r 33.8 1.7E+02 0.0038 25.7 6.8 26 40-65 43-68 (72)
339 TIGR03007 pepcterm_ChnLen poly 33.8 8.2E+02 0.018 28.5 17.1 18 139-156 277-294 (498)
340 PRK09546 zntB zinc transporter 33.8 3.4E+02 0.0074 30.0 10.7 57 134-194 154-210 (324)
341 PF10186 Atg14: UV radiation r 33.7 5E+02 0.011 27.6 11.6 29 128-156 68-96 (302)
342 PF10473 CENP-F_leu_zip: Leuci 33.6 1.5E+02 0.0033 30.1 7.2 82 101-188 29-116 (140)
343 PRK14011 prefoldin subunit alp 33.6 4.6E+02 0.0099 26.7 10.6 32 125-156 83-114 (144)
344 PF03528 Rabaptin: Rabaptin; 33.6 1.7E+02 0.0037 28.6 7.2 33 3-35 18-50 (106)
345 PRK10869 recombination and rep 33.4 9.5E+02 0.021 29.1 15.2 11 510-520 470-480 (553)
346 PRK11281 hypothetical protein; 33.4 1.3E+03 0.028 30.8 18.7 56 44-107 126-181 (1113)
347 PF02388 FemAB: FemAB family; 33.3 1E+02 0.0022 35.5 6.7 62 129-195 241-302 (406)
348 KOG0971 Microtubule-associated 33.1 8.7E+02 0.019 31.9 14.6 31 166-196 518-548 (1243)
349 PRK13411 molecular chaperone D 33.0 1.5E+02 0.0033 36.2 8.5 21 50-70 555-575 (653)
350 PF11559 ADIP: Afadin- and alp 32.9 2.5E+02 0.0055 27.7 8.6 83 5-100 62-147 (151)
351 PF10481 CENP-F_N: Cenp-F N-te 32.9 4.3E+02 0.0092 30.0 10.9 69 126-194 91-190 (307)
352 PF00261 Tropomyosin: Tropomyo 32.7 6.4E+02 0.014 27.0 12.8 21 7-27 6-26 (237)
353 PF02050 FliJ: Flagellar FliJ 32.7 2.5E+02 0.0054 25.2 7.9 31 126-156 48-78 (123)
354 PF09074 Mer2: Mer2; InterPro 32.6 3.2E+02 0.0069 29.3 9.5 26 124-149 143-168 (190)
355 KOG0964 Structural maintenance 32.6 5.8E+02 0.013 33.5 13.2 149 41-216 673-825 (1200)
356 PF00038 Filament: Intermediat 32.6 6.9E+02 0.015 27.2 15.9 31 126-156 184-214 (312)
357 PLN03223 Polycystin cation cha 32.5 5.8E+02 0.013 34.8 13.4 44 57-105 1464-1516(1634)
358 PF05377 FlaC_arch: Flagella a 32.3 1.7E+02 0.0036 25.7 6.2 48 139-194 2-49 (55)
359 cd07665 BAR_SNX1 The Bin/Amphi 32.3 3.8E+02 0.0083 29.2 10.5 71 54-153 160-230 (234)
360 PF13747 DUF4164: Domain of un 32.2 3.4E+02 0.0074 25.4 8.8 57 10-72 5-61 (89)
361 TIGR03687 pupylate_cterm ubiqu 32.2 15 0.00033 28.9 0.0 22 200-221 3-24 (33)
362 KOG1854 Mitochondrial inner me 32.2 1E+03 0.022 30.0 14.7 62 83-156 276-337 (657)
363 KOG2273 Membrane coat complex 32.2 9E+02 0.02 28.5 16.6 33 173-217 449-481 (503)
364 PF12889 DUF3829: Protein of u 32.1 6.4E+02 0.014 26.7 12.4 29 47-75 80-108 (276)
365 PF05149 Flagellar_rod: Parafl 31.8 8.1E+02 0.018 27.8 15.9 42 166-214 98-139 (289)
366 KOG4398 Predicted coiled-coil 31.8 88 0.0019 35.2 5.6 50 137-190 5-54 (359)
367 PF03938 OmpH: Outer membrane 31.8 3.9E+02 0.0084 26.2 9.7 59 10-74 23-81 (158)
368 PRK05771 V-type ATP synthase s 31.6 1.1E+02 0.0023 37.4 6.9 34 83-116 248-282 (646)
369 PF03993 DUF349: Domain of Unk 31.6 3E+02 0.0065 23.7 7.9 33 41-73 22-54 (77)
370 PRK10328 DNA binding protein, 31.6 1.6E+02 0.0035 29.6 7.0 54 131-202 22-75 (134)
371 KOG2991 Splicing regulator [RN 31.4 1.2E+02 0.0026 33.9 6.5 48 42-96 180-228 (330)
372 PRK10947 global DNA-binding tr 31.3 1.9E+02 0.0042 29.1 7.5 30 173-202 46-75 (135)
373 PF09325 Vps5: Vps5 C terminal 31.2 6.1E+02 0.013 26.2 16.0 53 164-216 161-219 (236)
374 cd00584 Prefoldin_alpha Prefol 31.0 4.1E+02 0.0088 25.5 9.5 32 125-156 82-113 (129)
375 cd04770 HTH_HMRTR Helix-Turn-H 31.0 95 0.0021 29.5 5.1 23 45-67 88-110 (123)
376 PRK12751 cpxP periplasmic stre 30.9 1.4E+02 0.0029 31.0 6.5 58 11-72 105-162 (162)
377 KOG0977 Nuclear envelope prote 30.8 2.9E+02 0.0063 33.8 10.0 49 46-97 222-275 (546)
378 PF05701 WEMBL: Weak chloropla 30.7 1E+03 0.022 28.7 16.4 22 41-62 213-234 (522)
379 smart00503 SynN Syntaxin N-ter 30.7 1.6E+02 0.0035 27.1 6.5 57 7-63 51-113 (117)
380 PF09210 DUF1957: Domain of un 30.7 75 0.0016 30.5 4.3 36 171-206 53-88 (102)
381 PF02996 Prefoldin: Prefoldin 30.6 70 0.0015 29.9 4.2 32 125-156 72-103 (120)
382 cd07654 F-BAR_FCHSD The F-BAR 30.6 1.2E+02 0.0026 33.4 6.4 38 5-47 120-157 (264)
383 PF10234 Cluap1: Clusterin-ass 30.4 8.2E+02 0.018 27.5 13.1 80 129-216 161-245 (267)
384 PRK10869 recombination and rep 30.3 1.1E+03 0.023 28.8 14.7 25 129-153 271-295 (553)
385 COG5481 Uncharacterized conser 30.3 2.4E+02 0.0051 25.4 6.8 32 7-38 5-36 (67)
386 PF11068 YlqD: YlqD protein; 30.2 3E+02 0.0064 27.7 8.5 51 125-175 15-65 (131)
387 KOG4484 Uncharacterized conser 30.1 2.3E+02 0.0051 30.0 7.9 33 180-214 93-130 (199)
388 PF15456 Uds1: Up-regulated Du 30.0 5.7E+02 0.012 25.5 10.4 18 46-63 25-42 (124)
389 PF02203 TarH: Tar ligand bind 29.9 3.3E+02 0.0072 26.3 8.8 62 12-73 81-144 (171)
390 PF14389 Lzipper-MIP1: Leucine 29.8 4.6E+02 0.01 24.4 10.4 14 43-56 8-21 (88)
391 PF08376 NIT: Nitrate and nitr 29.6 2.6E+02 0.0057 28.5 8.4 81 17-105 158-239 (247)
392 PRK03598 putative efflux pump 29.5 7.9E+02 0.017 27.1 12.6 45 140-187 155-199 (331)
393 COG3945 Uncharacterized conser 29.4 1.3E+02 0.0028 32.0 6.1 49 169-217 8-59 (189)
394 PF08514 STAG: STAG domain ; 29.4 98 0.0021 30.1 5.0 49 127-176 69-117 (118)
395 PF07083 DUF1351: Protein of u 29.3 3.9E+02 0.0084 28.5 9.8 47 83-152 57-104 (215)
396 PF02646 RmuC: RmuC family; I 29.3 1.3E+02 0.0028 33.5 6.5 47 8-59 1-47 (304)
397 cd08915 V_Alix_like Protein-in 29.2 8.5E+02 0.018 27.3 16.6 180 3-213 127-339 (342)
398 PF10359 Fmp27_WPPW: RNA pol I 29.1 1.3E+02 0.0027 35.6 6.7 65 132-198 165-232 (475)
399 PRK11820 hypothetical protein; 29.1 6.6E+02 0.014 28.2 11.8 80 42-155 151-235 (288)
400 PRK10361 DNA recombination pro 29.1 1.1E+03 0.024 28.5 14.5 70 83-159 89-162 (475)
401 KOG1451 Oligophrenin-1 and rel 29.0 1.2E+03 0.025 29.5 14.3 153 9-190 27-183 (812)
402 PF10458 Val_tRNA-synt_C: Valy 28.8 1.8E+02 0.0038 25.4 6.0 59 135-193 2-66 (66)
403 PHA02939 hypothetical protein; 28.8 6E+02 0.013 25.7 10.1 40 31-70 79-119 (144)
404 PF10112 Halogen_Hydrol: 5-bro 28.7 1.8E+02 0.0038 30.1 7.0 84 133-216 71-172 (199)
405 KOG1265 Phospholipase C [Lipid 28.7 7.5E+02 0.016 32.4 13.1 32 125-156 1119-1151(1189)
406 KOG0963 Transcription factor/C 28.7 1.3E+03 0.027 29.1 15.9 140 39-194 288-439 (629)
407 TIGR01005 eps_transp_fam exopo 28.5 1.2E+03 0.026 28.9 17.2 23 137-159 288-310 (754)
408 PF10224 DUF2205: Predicted co 28.5 2.4E+02 0.0051 26.3 6.9 48 11-71 18-69 (80)
409 TIGR01280 xseB exodeoxyribonuc 28.3 77 0.0017 28.2 3.7 37 181-217 6-43 (67)
410 PF12325 TMF_TATA_bd: TATA ele 28.3 2.1E+02 0.0047 28.2 7.1 37 176-215 75-111 (120)
411 PRK15041 methyl-accepting chem 28.2 4E+02 0.0088 31.7 10.7 62 10-71 86-148 (554)
412 PF01627 Hpt: Hpt domain; Int 28.2 2.3E+02 0.0049 24.2 6.6 79 134-214 2-85 (90)
413 KOG4302 Microtubule-associated 28.1 1.3E+03 0.028 29.1 17.2 22 80-101 108-129 (660)
414 cd07636 BAR_GRAF The Bin/Amphi 28.1 7.9E+02 0.017 26.6 15.2 68 145-215 119-188 (207)
415 TIGR00962 atpA proton transloc 28.1 5.1E+02 0.011 31.3 11.4 121 83-215 373-498 (501)
416 cd01107 HTH_BmrR Helix-Turn-He 27.9 1.3E+02 0.0027 28.4 5.3 25 43-67 82-106 (108)
417 TIGR01069 mutS2 MutS2 family p 27.9 1.4E+03 0.029 29.2 16.0 17 137-153 572-588 (771)
418 COG4079 Uncharacterized protei 27.8 1.8E+02 0.0038 32.4 7.0 48 17-64 147-205 (293)
419 TIGR02350 prok_dnaK chaperone 27.8 2.5E+02 0.0054 33.7 9.0 50 41-96 538-591 (595)
420 PRK00977 exodeoxyribonuclease 27.5 78 0.0017 29.1 3.7 37 181-217 15-52 (80)
421 PRK13729 conjugal transfer pil 27.5 1.3E+02 0.0028 36.0 6.4 32 126-157 65-96 (475)
422 PF11932 DUF3450: Protein of u 27.4 1.2E+02 0.0027 32.4 5.8 88 40-178 50-143 (251)
423 PF15397 DUF4618: Domain of un 27.3 9.1E+02 0.02 27.0 14.7 164 5-195 23-215 (258)
424 KOG4302 Microtubule-associated 27.3 5.6E+02 0.012 32.1 11.8 68 5-72 170-266 (660)
425 KOG4673 Transcription factor T 27.2 6.3E+02 0.014 32.1 11.9 134 10-158 485-633 (961)
426 PF13851 GAS: Growth-arrest sp 27.1 7.7E+02 0.017 26.1 17.6 28 190-217 168-195 (201)
427 cd07676 F-BAR_FBP17 The F-BAR 27.0 8.6E+02 0.019 26.6 15.0 156 23-214 67-232 (253)
428 PF09548 Spore_III_AB: Stage I 27.0 3.5E+02 0.0075 27.6 8.6 30 4-33 59-93 (170)
429 PRK14066 exodeoxyribonuclease 26.9 82 0.0018 28.7 3.7 37 181-217 9-46 (75)
430 PF07464 ApoLp-III: Apolipopho 26.9 7.2E+02 0.016 25.7 12.2 111 16-155 3-117 (155)
431 PRK03830 small acid-soluble sp 26.6 2.4E+02 0.0051 26.1 6.4 52 5-63 12-63 (73)
432 PF04286 DUF445: Protein of un 26.6 5.5E+02 0.012 28.0 10.7 23 122-144 202-224 (367)
433 KOG0239 Kinesin (KAR3 subfamil 26.5 5.6E+02 0.012 32.1 11.7 18 139-156 243-260 (670)
434 PF06705 SF-assemblin: SF-asse 26.5 8.3E+02 0.018 26.2 16.8 47 166-215 143-190 (247)
435 PF07139 DUF1387: Protein of u 26.4 9.5E+02 0.021 27.5 12.4 31 42-72 156-186 (302)
436 KOG0995 Centromere-associated 26.1 9E+02 0.019 30.0 12.8 39 78-117 290-331 (581)
437 cd04787 HTH_HMRTR_unk Helix-Tu 25.8 1.2E+02 0.0026 29.5 5.0 23 45-67 88-110 (133)
438 KOG1103 Predicted coiled-coil 25.7 8.1E+02 0.018 28.8 11.8 18 43-60 111-128 (561)
439 PF07352 Phage_Mu_Gam: Bacteri 25.5 3.5E+02 0.0076 27.0 8.2 62 130-218 3-64 (149)
440 PF06698 DUF1192: Protein of u 25.5 1.6E+02 0.0034 26.1 5.0 20 138-157 22-41 (59)
441 PF07889 DUF1664: Protein of u 25.3 6E+02 0.013 25.5 9.6 16 83-98 40-55 (126)
442 PRK00290 dnaK molecular chaper 25.2 2.9E+02 0.0063 33.5 9.0 21 50-70 553-573 (627)
443 PF05781 MRVI1: MRVI1 protein; 25.1 6.7E+02 0.015 30.8 11.6 30 127-156 252-281 (538)
444 KOG4603 TBP-1 interacting prot 24.9 5.3E+02 0.011 27.6 9.4 78 131-214 87-166 (201)
445 PF04012 PspA_IM30: PspA/IM30 24.8 4.9E+02 0.011 27.2 9.5 117 55-194 3-126 (221)
446 PF00669 Flagellin_N: Bacteria 24.7 4.9E+02 0.011 24.8 8.8 62 4-73 14-75 (139)
447 PF05957 DUF883: Bacterial pro 24.7 2.5E+02 0.0055 25.7 6.6 68 140-216 1-72 (94)
448 COG5394 Uncharacterized protei 24.7 4.6E+02 0.0099 27.8 8.9 92 43-154 99-191 (193)
449 KOG0946 ER-Golgi vesicle-tethe 24.6 1.7E+03 0.036 29.1 15.5 25 132-156 864-888 (970)
450 cd07672 F-BAR_PSTPIP2 The F-BA 24.4 7E+02 0.015 27.1 10.8 10 41-50 127-136 (240)
451 PF05557 MAD: Mitotic checkpoi 24.3 25 0.00055 43.1 0.0 52 5-56 96-152 (722)
452 PF01496 V_ATPase_I: V-type AT 24.3 3E+02 0.0066 34.2 9.1 98 4-117 199-298 (759)
453 PF08946 Osmo_CC: Osmosensory 24.3 47 0.001 28.0 1.6 32 128-159 3-34 (46)
454 PRK07737 fliD flagellar cappin 24.0 1.3E+03 0.028 27.7 14.5 27 8-34 267-293 (501)
455 PF09728 Taxilin: Myosin-like 24.0 1.1E+03 0.023 26.7 16.5 66 130-195 237-308 (309)
456 PF07061 Swi5: Swi5; InterPro 23.9 1.6E+02 0.0034 27.4 5.0 24 42-75 32-55 (83)
457 COG1722 XseB Exonuclease VII s 23.8 1.3E+02 0.0027 28.0 4.3 39 178-216 12-51 (81)
458 PF01044 Vinculin: Vinculin fa 23.8 1.7E+03 0.037 29.0 17.2 146 55-207 384-554 (968)
459 cd01108 HTH_CueR Helix-Turn-He 23.8 1.5E+02 0.0033 28.7 5.1 23 45-67 88-110 (127)
460 PF05852 DUF848: Gammaherpesvi 23.7 2.3E+02 0.005 29.1 6.5 55 134-216 58-112 (146)
461 PF03234 CDC37_N: Cdc37 N term 23.7 8.5E+02 0.018 25.7 10.8 21 171-191 129-149 (177)
462 cd07639 BAR_ACAP1 The Bin/Amph 23.6 7.1E+02 0.015 26.7 10.4 48 164-214 131-180 (200)
463 PF10136 SpecificRecomb: Site- 23.6 3.9E+02 0.0085 33.3 9.6 89 126-216 188-289 (643)
464 PRK05183 hscA chaperone protei 23.6 2.3E+02 0.0049 34.6 7.7 38 50-97 557-594 (616)
465 cd01109 HTH_YyaN Helix-Turn-He 23.6 1.7E+02 0.0037 27.6 5.3 21 46-66 89-109 (113)
466 PF10805 DUF2730: Protein of u 23.6 2E+02 0.0044 27.4 5.9 67 127-193 32-99 (106)
467 cd07681 F-BAR_PACSIN3 The F-BA 23.5 1E+03 0.022 26.5 11.9 104 11-151 128-243 (258)
468 PF08580 KAR9: Yeast cortical 23.5 4.6E+02 0.01 32.8 10.3 130 2-192 29-174 (683)
469 KOG4031 Vesicle coat protein c 23.4 2.9E+02 0.0064 30.0 7.5 69 124-193 134-210 (216)
470 cd07591 BAR_Rvs161p The Bin/Am 23.4 7.9E+02 0.017 26.4 10.8 36 24-68 12-47 (224)
471 TIGR02044 CueR Cu(I)-responsiv 23.3 1.4E+02 0.0031 28.8 4.9 26 43-68 86-111 (127)
472 PF04791 LMBR1: LMBR1-like mem 23.2 2.9E+02 0.0062 31.9 8.1 59 4-62 198-257 (471)
473 PF04220 YihI: Der GTPase acti 23.1 1.3E+02 0.0028 31.5 4.7 35 183-217 108-146 (169)
474 TIGR01035 hemA glutamyl-tRNA r 23.1 3E+02 0.0065 31.9 8.2 47 83-157 314-361 (417)
475 cd00176 SPEC Spectrin repeats, 23.0 6.9E+02 0.015 24.1 15.8 20 83-102 94-113 (213)
476 KOG0018 Structural maintenance 23.0 1.5E+03 0.033 30.2 14.5 50 100-155 385-434 (1141)
477 PRK12705 hypothetical protein; 23.0 8.1E+02 0.017 29.8 11.8 26 189-214 259-284 (508)
478 TIGR01010 BexC_CtrB_KpsE polys 23.0 5.9E+02 0.013 28.6 10.3 87 124-210 164-252 (362)
479 COG0249 MutS Mismatch repair A 22.8 1.5E+03 0.033 29.2 14.7 164 19-193 366-550 (843)
480 PF05565 Sipho_Gp157: Siphovir 22.7 3E+02 0.0065 28.0 7.2 34 47-98 58-91 (162)
481 PF00816 Histone_HNS: H-NS his 22.7 62 0.0014 29.6 2.2 16 141-156 2-17 (93)
482 PRK13343 F0F1 ATP synthase sub 22.3 6.8E+02 0.015 30.4 11.0 121 85-215 376-499 (502)
483 COG4942 Membrane-bound metallo 22.3 6.7E+02 0.015 29.9 10.7 19 70-88 141-159 (420)
484 PF09537 DUF2383: Domain of un 22.2 4.6E+02 0.01 24.3 7.9 58 130-193 1-58 (111)
485 COG2924 Uncharacterized protei 22.1 65 0.0014 30.4 2.2 26 85-110 60-85 (90)
486 cd07307 BAR The Bin/Amphiphysi 22.1 7E+02 0.015 23.8 16.0 55 43-101 65-120 (194)
487 TIGR00383 corA magnesium Mg(2+ 22.0 4.4E+02 0.0096 28.7 8.9 62 133-194 138-203 (318)
488 CHL00059 atpA ATP synthase CF1 22.0 8.1E+02 0.018 29.7 11.5 113 89-215 359-478 (485)
489 PF10475 DUF2450: Protein of u 22.0 3.4E+02 0.0074 29.8 8.0 72 1-72 66-144 (291)
490 cd07680 F-BAR_PACSIN1 The F-BA 22.0 1.1E+03 0.024 26.1 17.5 147 12-210 8-178 (258)
491 PF03105 SPX: SPX domain; Int 21.9 6.8E+02 0.015 25.8 9.8 32 126-157 102-133 (275)
492 PRK15422 septal ring assembly 21.8 3.8E+02 0.0082 25.2 6.9 32 126-157 14-45 (79)
493 PRK14064 exodeoxyribonuclease 21.7 1.2E+02 0.0026 27.7 3.7 36 181-216 11-47 (75)
494 PF05974 DUF892: Domain of unk 21.6 1.8E+02 0.004 29.3 5.4 45 171-215 40-86 (159)
495 KOG0103 Molecular chaperones H 21.6 9.2E+02 0.02 30.6 12.0 66 41-113 586-657 (727)
496 PF08376 NIT: Nitrate and nitr 21.5 8.8E+02 0.019 24.8 11.9 45 52-103 5-49 (247)
497 PF05278 PEARLI-4: Arabidopsis 21.5 2.7E+02 0.0058 31.2 7.0 53 41-99 209-262 (269)
498 COG1842 PspA Phage shock prote 21.5 1E+03 0.022 26.0 11.2 84 80-193 36-119 (225)
499 KOG3540 Beta amyloid precursor 21.3 2.6E+02 0.0057 33.8 7.2 91 87-193 262-354 (615)
500 KOG3433 Protein involved in me 21.1 2.9E+02 0.0064 29.6 6.8 129 65-212 69-202 (203)
No 1
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=3.9e-117 Score=982.81 Aligned_cols=222 Identities=61% Similarity=0.876 Sum_probs=214.6
Q ss_pred ccccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhH
Q 002856 2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYE 81 (873)
Q Consensus 2 aa~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~ 81 (873)
|++||||+|||||||||+|||++||+||+||++++|.|||||||+|||||||||||||||||||++++|||||.
T Consensus 1 ~~~RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~------ 74 (575)
T KOG2150|consen 1 MAKRKLQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKD------ 74 (575)
T ss_pred CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHH------
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 002856 82 QALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG 161 (873)
Q Consensus 82 ~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~ 161 (873)
.|++||||||.+|||||+|||||||||||||||+.++|+||+|++|.|+++||++||++|++|+|.||+|
T Consensus 75 -~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~--------- 144 (575)
T KOG2150|consen 75 -SLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAE--------- 144 (575)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCCCccCCccccccCCCCCccccc
Q 002856 162 KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESL 241 (873)
Q Consensus 162 K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~nqddf~ef~dde~iYd~L~Ld~~~~~ 241 (873)
+++.+|+||+|||.+||+|||+|+|++++|+.|++++|||.||||+|++ +||.++++||++|+|++.+..
T Consensus 145 --------~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqd--pdF~e~e~iYd~l~le~~e~~ 214 (575)
T KOG2150|consen 145 --------ELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQD--PDFLEDETIYDDLNLEELEAS 214 (575)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccC--chhhhhhHHhhccCchhhhhh
Confidence 7999999999999999999999999999999999999999999999999 356679999999999999988
Q ss_pred ccccccCC
Q 002856 242 EDLVTIGP 249 (873)
Q Consensus 242 ~~~~~~~p 249 (873)
.++++.++
T Consensus 215 ~~~~~~~~ 222 (575)
T KOG2150|consen 215 MDAVAPGS 222 (575)
T ss_pred HhhhcCCc
Confidence 88877544
No 2
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=3.7e-95 Score=773.43 Aligned_cols=197 Identities=46% Similarity=0.736 Sum_probs=191.8
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHH
Q 002856 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLI 91 (873)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~I 91 (873)
|++||+|.|||+.||+||+|+++++|.+||||||+|||+|||||||+|||||||++++|||||+ +|+++||||
T Consensus 1 ~~~~~~~~e~i~~fd~iyek~~~s~~~s~~ekle~dlk~~ikklq~~rdqiktw~s~~dikdk~-------~l~~nrrli 73 (548)
T COG5665 1 DKLLKKVKEGIEDFDDIYEKFQSTDNSSHREKLESDLKREIKKLQKHRDQIKTWLSKEDVKDKQ-------VLMTNRRLI 73 (548)
T ss_pred ChhHHHHHhhhhhHHHHHHHHhccCchhHHHHHhhHHHHHHHHHHHHHHHHHHhhcccccchHH-------HHHHhHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHH
Q 002856 92 EREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHL 171 (873)
Q Consensus 92 E~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~l 171 (873)
|..|||||+|||+||||+||||||..++++||+|++|++...||.+|++||++|.|.+||| ++
T Consensus 74 e~~me~fk~ve~~mk~k~fske~ls~~~~~dpke~~k~d~i~~i~~~~~el~~q~e~~ea~-----------------e~ 136 (548)
T COG5665 74 ENGMERFKSVEKLMKTKQFSKEALTNPDIIDPKELKKRDQVLFIHDCLDELQKQLEQYEAQ-----------------EN 136 (548)
T ss_pred HhHHHHHHHHHHHHHHHHhhHhhccCcccCChhHhccccceehHHHHHHHHHHHHHHHHHH-----------------Hh
Confidence 9999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCCCccCCccccccCCC
Q 002856 172 ETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLP 234 (873)
Q Consensus 172 e~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~nqddf~ef~dde~iYd~L~ 234 (873)
+..+|||+|||.+||+|||.|+|.+++||-|++|+|||.||||+|++ +||.++|+|||+||
T Consensus 137 e~~~erh~~h~~~le~i~~~l~n~~~~pe~v~~~q~di~yyve~~~~--~df~e~~~~y~~~~ 197 (548)
T COG5665 137 EEQTERHEFHIANLENILKKLQNNEMDPEPVEEFQDDIKYYVENNDD--PDFIEYDTIYEDMG 197 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHhhcCCC--cchhhhhhHHHhhc
Confidence 99999999999999999999999999999999999999999999998 25556899999999
No 3
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=1.8e-87 Score=690.69 Aligned_cols=228 Identities=62% Similarity=0.908 Sum_probs=217.7
Q ss_pred ccccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhH
Q 002856 2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYE 81 (873)
Q Consensus 2 aa~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~ 81 (873)
|++||||+|||||||||+|||++||+||+||++++|+|||||||+|||||||||||||||||+|++++|||||+
T Consensus 1 m~~RKLQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk~------ 74 (233)
T PF04065_consen 1 MAKRKLQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKK------ 74 (233)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccHH------
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 002856 82 QALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG 161 (873)
Q Consensus 82 ~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~ 161 (873)
+|+|+||+||++|||||+|||+|||||||||||++++++||++++|.|+++||+++|++|++|||.||+|+|+|+.+++
T Consensus 75 -~L~e~Rk~IE~~MErFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~k 153 (233)
T PF04065_consen 75 -KLLENRKLIEEQMERFKVVEKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKK 153 (233)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975332
Q ss_pred C-----CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCCCccCCccccccCCCCC
Q 002856 162 K-----TRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLD 236 (873)
Q Consensus 162 K-----~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~nqddf~ef~dde~iYd~L~Ld 236 (873)
| ..++|+++|+.+|+||+|||.+||+|||+|+||.|+|++|++|||||+|||++|+++ ||++|++|||+|+||
T Consensus 154 Kkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e~V~~ikedieyYve~n~d~--Df~ede~iYddl~Ld 231 (233)
T PF04065_consen 154 KKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDELDPEQVEDIKEDIEYYVESNQDP--DFEEDEDIYDDLNLD 231 (233)
T ss_pred cCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCC--cccchHhHhhccCCC
Confidence 2 356899999999999999999999999999999999999999999999999999983 566799999999999
Q ss_pred cc
Q 002856 237 KV 238 (873)
Q Consensus 237 ~~ 238 (873)
++
T Consensus 232 ee 233 (233)
T PF04065_consen 232 EE 233 (233)
T ss_pred CC
Confidence 74
No 4
>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=8.8e-37 Score=292.08 Aligned_cols=126 Identities=43% Similarity=0.882 Sum_probs=108.1
Q ss_pred hhhhCCCCCCCCccCCCCCCCCCCCCCCCC-------CCCCCC-CCChhhhhhhccCCCCCcceEEEeecCCChHHHHHH
Q 002856 728 AFYKLPQPKDSERARSYIPRHPAVTPPSYP-------QVQAPI-VSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLA 799 (873)
Q Consensus 728 ly~tF~sPwdsep~r~~~P~~p~~~P~cY~-------~~p~p~-l~~p~~f~K~ki~~f~~ETLFYIFYs~PgD~~Ql~A 799 (873)
||.+|++||++.+++...+ .+.+|.||. +.+++. ++++.+|+| |++||||||||+||||++|++|
T Consensus 1 L~~sf~sp~~~~~~~~~~~--~y~~P~~~~~~~~~~p~~p~~~~~~~~~~~~k-----~~~eTLFyiFY~~p~~~~Q~~A 73 (134)
T PF04153_consen 1 LYSSFASPPSDSDSRQQEP--QYQIPSCYLPTPSSYPQRPPPIILDSPEKFQK-----FSEETLFYIFYYMPGDYQQLLA 73 (134)
T ss_pred CccccCCCCCCCCCCCCCC--CCCCCCCcCcCccccCCCcCcccccchHHHhh-----cCCceEEEEEeecCCcHHHHHH
Confidence 6889999999987643211 234555555 555454 556777777 9999999999999999999999
Q ss_pred HHHHhhcccccccccceeeeccCCCcccCCCcceEEEEEEcCcCCccccccccccccccceEEeccchh
Q 002856 800 AKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLE 868 (873)
Q Consensus 800 A~EL~~RgWRYHkk~~~Wf~R~~eP~~~t~~yErGsY~~FDp~~~~~~~~~~W~qk~K~eFtleY~~LE 868 (873)
|+||++|||||||++++||+|++++.++++.+|+|+|+|||+ ++|+++.|+||+|+|++||
T Consensus 74 A~eL~~R~Wryhk~~~~W~~r~~~~~~~~~~~e~g~y~~FD~--------~~W~~~~k~~f~~~y~~LE 134 (134)
T PF04153_consen 74 AKELYKRGWRYHKEYKTWFQRDSEPKPITEQYERGSYVYFDP--------ESWEKRRKKNFTFDYSDLE 134 (134)
T ss_pred HHHHHHCCcEEecCcCEEeeECCCCCccccceeeeeEEEech--------HHhcCcchhccEEeHHHcC
Confidence 999999999999999999999999999999999999999999 4799888899999999998
No 5
>COG5601 CDC36 General negative regulator of transcription subunit [Transcription]
Probab=99.98 E-value=8.1e-34 Score=272.92 Aligned_cols=155 Identities=25% Similarity=0.501 Sum_probs=129.6
Q ss_pred cccCCCCc--cccCCCCCccccCCCcccccccc----cchHHhhhhCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002856 692 RRSVSDLG--AIGDSLSGATVSSGGMHDQMYNM----QMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS 765 (873)
Q Consensus 692 r~s~pDL~--AlG~DLT~~~~tLG~~~e~~LNL----ns~E~ly~tF~sPwdsep~r~~~P~~p~~~P~cY~~~p~p~l~ 765 (873)
+|.|..+. .||-||. ++| +.| ...+.+..+|.+||+...-++..| -+.+|.||+..|+|+.-
T Consensus 10 ~ied~e~s~~~lg~Dl~----s~~------~sl~~p~~~qDr~~~t~~sPwae~tkk~vqp--~f~lP~cy~n~p~pp~f 77 (172)
T COG5601 10 QIEDEEQSIHDLGKDLL----SEI------LSLVRPKKYQDRPSTTLYSPWAESTKKPVQP--MFMLPNCYPNAPNPPIF 77 (172)
T ss_pred HHHHhhhhHHHhchhHH----HHH------HhhcCcccccccccccccChhhhhccCcccc--hhcCccccCCCCCCCce
Confidence 66776666 7888888 655 444 445557788999999985444333 26799999999877554
Q ss_pred ChhhhhhhccCCCCCcceEEEeecCCChHHHHHHHHHHhhcccccccccceeeeccC--CCcccCCCcceEEEEEEcCcC
Q 002856 766 NPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHI 843 (873)
Q Consensus 766 ~p~~f~K~ki~~f~~ETLFYIFYs~PgD~~Ql~AA~EL~~RgWRYHkk~~~Wf~R~~--eP~~~t~~yErGsY~~FDp~~ 843 (873)
+.. -+.+||+.|++||||||||+||+|++|..|+.||.+|+|||||.+++|++.++ +|.+.++..|||+|++|||.
T Consensus 78 ~~~-~~~~k~~~f~dETLFyiFY~~P~dvlQe~ay~el~krnwrfhK~lk~wlT~~p~m~P~~~~~~~ergsyvfFDP~- 155 (172)
T COG5601 78 KVN-IEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWLTFNPGMSPATADHVKERGSYVFFDPF- 155 (172)
T ss_pred ecc-hHHHHHHhhccceeEEEEeeCCcHHHHHHHHHHHHHhchhhhhhheeeeccCCCCCccccccccccceEEEEcch-
Confidence 444 45689999999999999999999999999999999999999999999999985 78888899999999999994
Q ss_pred CccccccccccccccceEEeccchh
Q 002856 844 ANDDLQHGWCQRIKTEFTFEYNYLE 868 (873)
Q Consensus 844 ~~~~~~~~W~qk~K~eFtleY~~LE 868 (873)
.|. |++.+|.|+|+.++
T Consensus 156 -------~W~-k~~~dfll~y~av~ 172 (172)
T COG5601 156 -------SWS-KVSLDFLLDYKAVR 172 (172)
T ss_pred -------hHH-HHhHHHHHHHHhhC
Confidence 895 99999999998764
No 6
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.57 E-value=8.7e-16 Score=164.36 Aligned_cols=106 Identities=24% Similarity=0.347 Sum_probs=87.7
Q ss_pred CCCCccccc--cccCCC--Cc-cccCCCCCccccCCCcccccccccchHHhhhhCCCCCCCCccCCCCCCCCCCCCCCCC
Q 002856 683 PSGGLGVIG--RRSVSD--LG-AIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYP 757 (873)
Q Consensus 683 ~~GLLGvi~--r~s~pD--L~-AlG~DLT~~~~tLG~~~e~~LNLns~E~ly~tF~sPwdsep~r~~~P~~p~~~P~cY~ 757 (873)
.||+.|++. |..+.| +. .+|.||+ ++| |+|+..+.++.+|.+||...|++.. ..+.+|.||+
T Consensus 202 ~fgm~gLL~~ir~~~~~g~~~l~lg~Dl~----~ll------lsla~~~di~~~F~~P~~~~P~~~~---~~~~lp~~y~ 268 (312)
T KOG2151|consen 202 QFGMKGLLTLIRGAQGEGQTTLPLGADLN----SLL------LSLAVPEDIIPTFQGPWGEVPTSQE---ASFNLPNCYL 268 (312)
T ss_pred hhhhhcchhhheecccCcceeeccCCChh----hhh------ccccccccccccccCCcccCCcccc---hhhhcchhhh
Confidence 367667666 555554 22 8999999 888 9999999999999999999999932 2477999999
Q ss_pred CCCCCCCCChhhhhhhccCCCCCcceEEEeecCCChHHHHHHHHHHhhccc
Q 002856 758 QVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 808 (873)
Q Consensus 758 ~~p~p~l~~p~~f~K~ki~~f~~ETLFYIFYs~PgD~~Ql~AA~EL~~RgW 808 (873)
.++++. .. .++..|++||||||||.+|+|.+|+.||.||.+|+|
T Consensus 269 ~v~~~~-~~------~~~~~~~dE~lff~fyt~~~d~~Q~~aa~el~~r~w 312 (312)
T KOG2151|consen 269 NVNPKL-QF------SKIDQFQDETLFYIFYTFPGDVMQELAAAELLKRNW 312 (312)
T ss_pred ccCCcc-ch------HHHhhhcccceeeeeccCCcchhhhhHHHHhhccCC
Confidence 854433 21 346779999999999999999999999999999999
No 7
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.33 E-value=8.9e-13 Score=141.59 Aligned_cols=133 Identities=28% Similarity=0.561 Sum_probs=109.2
Q ss_pred cccCCCCCccccCCCcccccccccc-hHHhhhhCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhhhhh---hcc
Q 002856 700 AIGDSLSGATVSSGGMHDQMYNMQM-LESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER---LSL 775 (873)
Q Consensus 700 AlG~DLT~~~~tLG~~~e~~LNLns-~E~ly~tF~sPwdsep~r~~~P~~p~~~P~cY~~~p~p~l~~p~~f~K---~ki 775 (873)
++|.||+ +|| +|+|. .-.+|.+|++||++++.+.- .+..+|.||...+. ++.+ ..+
T Consensus 37 ~~~~d~~----~lg------~~~n~~~~~~~~~f~g~~~s~~l~~l---~~~~~P~~~~~~~~-------~~~~~~~~~~ 96 (312)
T KOG2151|consen 37 ALGYDLT----TLG------LNLNLSERKLLMNFAGPWASEPLRHL---LDTKVPEEYMTHRH-------LRSKLPSLRL 96 (312)
T ss_pred eeccchh----ccC------cccccccccccccccCcCCCcccccc---ccccCccccccchh-------hhhcCCcccc
Confidence 8899999 999 55543 33789999999999999843 34679999984322 1222 346
Q ss_pred CCCCCcceEEEeecCCChHHHHHHHHHHhhcccccccccceeeeccC--CCcccCCCcceEEEEEEcCcCCccccccccc
Q 002856 776 DSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWC 853 (873)
Q Consensus 776 ~~f~~ETLFYIFYs~PgD~~Ql~AA~EL~~RgWRYHkk~~~Wf~R~~--eP~~~t~~yErGsY~~FDp~~~~~~~~~~W~ 853 (873)
+++...-|||+||++| |.||+.|.||||++.+.|+++.. .+...++.++.|.|..||. ..|+
T Consensus 97 ~kv~~~~l~~~~~~~P--------a~e~~~r~~~~~~~~~~~l~~s~yg~~~~~~~~~~~g~~~~~~q--------~s~~ 160 (312)
T KOG2151|consen 97 NKVGERVLFYLFYNLP--------AGELQAREWRFHKSEQVWLTRSQYGGVKELPGNYMKGHFNVFDQ--------MSWR 160 (312)
T ss_pred cccccccceeeeccCC--------CcccccccccccccccccccccccCCccccccchhhchhccccc--------hhhh
Confidence 7799999999999999 99999999999999999999974 5666778999999999999 5896
Q ss_pred cccccceEEeccchhh
Q 002856 854 QRIKTEFTFEYNYLED 869 (873)
Q Consensus 854 qk~K~eFtleY~~LE~ 869 (873)
.+.++.-++|..+|+
T Consensus 161 -~~~ke~~l~~~~~~~ 175 (312)
T KOG2151|consen 161 -KIPKELKLAYSDLED 175 (312)
T ss_pred -hcccchhhccccccc
Confidence 788899999999886
No 8
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.70 E-value=0.11 Score=55.53 Aligned_cols=173 Identities=20% Similarity=0.266 Sum_probs=86.4
Q ss_pred HHHHHHHHhhcCCC--chhHHHHHHHHHHHHHHHHHhH-HHHHHhhcccc-cccc-c---cchhhHHHHHHHHHHHHHHH
Q 002856 24 VFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQRYR-DQIKTWIQSSE-IKDK-K---VSASYEQALVDARKLIEREM 95 (873)
Q Consensus 24 ~Fd~i~~K~~~a~n--~nQKEKlE~DLKKEIKKLQR~R-DQIKtW~~s~e-IKDK-~---~~~~~~~~L~e~Rk~IE~~M 95 (873)
.|...|+.+-...- ++....|-.-|..++|.+++++ +|+|.|-..-+ +-+. . ........|..+|+.-|.
T Consensus 57 tl~~~w~~~~~~~E~~a~~H~~l~~~L~~~~~~i~~~~~~~~k~~kk~~e~~~~~~~~~q~~q~~~~~l~kaK~~Y~~-- 134 (261)
T cd07674 57 TFAPMWEVFRVSSDKLALCHLELMRKLNDLIKDINRYGDEQVKIHKKTKEEAIGTLEAVQSLQVQSQHLQKSRENYHS-- 134 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 47777777754332 2334444444555555566655 69999988522 1010 0 001122344555555554
Q ss_pred HHHHHHHhhhccccccccccCCCCCCCchHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHH
Q 002856 96 ERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE-----TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTH 170 (873)
Q Consensus 96 ErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E-----~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~ 170 (873)
++|+.|+..+ .|+ .+++.+|.. +.+=...+++.++.-...|+.++...-.+=-.-...||..
T Consensus 135 -~cke~e~a~~------~~~------s~k~leK~~~K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~ 201 (261)
T cd07674 135 -KCVEQERLRR------EGV------PQKELEKAELKTKKAAESLRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRH 201 (261)
T ss_pred -HHHHHHHHHh------cCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455432 232 223222221 2333555666666655556655433210000112458888
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCC
Q 002856 171 LETSITRHKAHIMK--------LELILRLLDNDELSPEQVNDVKDLLEDYVERNQDD 219 (873)
Q Consensus 171 le~~ierhk~Hi~k--------LE~lLRlL~N~~l~pe~V~~ikddieyYve~nqdd 219 (873)
|...+-.+-.|+.. .|.|.+.|. .| ++.+||..||+++...
T Consensus 202 lk~~L~~~~~~~~~~~~~~~~~~e~~~~~l~-------~i-d~~~Di~~fv~~~~tG 250 (261)
T cd07674 202 MKLLIKGYSHSVEDTHVQIGQVHEEFKQNVE-------NV-GVENLIRKFAESKGTG 250 (261)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHH-------hC-CHHHHHHHHHHhCCCC
Confidence 88888777656432 233333322 22 2668899999988764
No 9
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.35 E-value=0.81 Score=52.96 Aligned_cols=139 Identities=14% Similarity=0.281 Sum_probs=65.7
Q ss_pred cchhhhHHHHhhhHHH---hHHHHHHHHHHhhcCCCc------hhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccc
Q 002856 5 RKLQGEIDRVLKKVQE---GVDVFDSIWNKVYDTDNA------NQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK 75 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~E---Gve~Fd~i~~K~~~a~n~------nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~ 75 (873)
|+++++|+++..++.+ .++.|+...+.+...... ++.+++....+.-..++.+++++|..+-. ++.+-.
T Consensus 177 ~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~--~i~~~~ 254 (562)
T PHA02562 177 RELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM--DIEDPS 254 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccHH
Confidence 4556666665554444 555555554544432221 11222222223333333455555554442 222211
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCC--CCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002856 76 VSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ--PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 153 (873)
Q Consensus 76 ~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~--~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~ 153 (873)
..-+.|.+.+..++..++.++..-+-.| +.+-... ..++.. .....-|.+-|.+|+.|++.++..+
T Consensus 255 ---~~L~~l~~~~~~~~~~l~~~~~~~~~~~-----~~~~Cp~C~~~~~~~----~~~~~~l~d~i~~l~~~l~~l~~~i 322 (562)
T PHA02562 255 ---AALNKLNTAAAKIKSKIEQFQKVIKMYE-----KGGVCPTCTQQISEG----PDRITKIKDKLKELQHSLEKLDTAI 322 (562)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCCCCcCCCc----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112456666777777777665544333 1111110 111111 3444456667777888877777777
Q ss_pred hhhh
Q 002856 154 EGLT 157 (873)
Q Consensus 154 E~Ls 157 (873)
..+.
T Consensus 323 ~~~~ 326 (562)
T PHA02562 323 DELE 326 (562)
T ss_pred HHHH
Confidence 7653
No 10
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.01 E-value=0.86 Score=58.49 Aligned_cols=133 Identities=23% Similarity=0.316 Sum_probs=77.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCC
Q 002856 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQ 117 (873)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~ 117 (873)
.++.+-+...++..-.++..-.++++.|+. ++++++.+- +..|.+.|+.|+.-.++-+.||..
T Consensus 731 d~~i~~i~~~i~~~~~~~~~~~~~le~~~~-~eL~~~GvD---~~~I~~l~~~i~~L~~~l~~ie~~------------- 793 (1201)
T PF12128_consen 731 DEQIEQIKQEIAAAKQEAKEQLKELEQQYN-QELAGKGVD---PERIQQLKQEIEQLEKELKRIEER------------- 793 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 444555556666666666677778888887 466766622 446777777777766665555532
Q ss_pred CCCCCchHHhHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhhcccC---CCCchhhHHHHHHHHHHHHHHHH
Q 002856 118 QPKTDPKEKAKSETRDWLNNL----------VSELESQIDSFEAELEGLTVKKG---KTRPPRLTHLETSITRHKAHIMK 184 (873)
Q Consensus 118 ~~k~Dp~ekek~E~~~wL~~~----------IdeL~~QiE~~EaE~E~Ls~KK~---K~~~~r~~~le~~ierhk~Hi~k 184 (873)
..+-.+-.+|+... ..+|..|+..++.+++.+..+.. +.-..++.+++..+...+-++..
T Consensus 794 -------r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 866 (1201)
T PF12128_consen 794 -------RAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQ 866 (1201)
T ss_pred -------HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334455666654 33455566666666555532211 11124555666666666666666
Q ss_pred HHHHHHhhhC
Q 002856 185 LELILRLLDN 194 (873)
Q Consensus 185 LE~lLRlL~N 194 (873)
|+..++.|.+
T Consensus 867 ~~~~l~~l~~ 876 (1201)
T PF12128_consen 867 LEEQLRRLRD 876 (1201)
T ss_pred HHHHHHHHHH
Confidence 6666664433
No 11
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.99 E-value=4.8 Score=44.73 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHH
Q 002856 166 PRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYV 213 (873)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYv 213 (873)
.+++++...+..++--|..+|.++. .+...+..+|..||+.++..=
T Consensus 244 ~~i~~~~~~k~~l~~eI~e~~~~~~--~~r~~t~~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 244 EKIEELEEQKQELLAEIAEAEKIRE--ECRGWTRSEVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHH
Confidence 4566777777777888888887776 556679999999999998653
No 12
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.36 E-value=2.3 Score=51.07 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Q 002856 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (873)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~ 69 (873)
..+|+.+|.+++..-+++.+.+++++.|+++.
T Consensus 261 ~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~ 292 (650)
T TIGR03185 261 FEEREQLERQLKEIEAARKANRAQLRELAADP 292 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55688999999999999999999999999765
No 13
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.31 E-value=1.6 Score=47.18 Aligned_cols=136 Identities=28% Similarity=0.317 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhHHH-HHHhhccc------cccccccchhhHHHHHHHHHHHHHHHHHHH-HHHhhhccccccccccCCC
Q 002856 47 DLKKEIKKLQRYRDQ-IKTWIQSS------EIKDKKVSASYEQALVDARKLIEREMERFK-ICEKETKTKAFSKEGLGQQ 118 (873)
Q Consensus 47 DLKKEIKKLQR~RDQ-IKtW~~s~------eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK-~vEKe~KtKafSkEGL~~~ 118 (873)
-|+.||.-|.+..++ |+.+...- ++++- ...-+...|.+.|.--|..+.++| .+|...+.|- +.|..
T Consensus 128 ~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~-~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~---~~l~~- 202 (312)
T PF00038_consen 128 SLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQF-RSSDLSAALREIRAQYEEIAQKNREELEEWYQSKL---EELRQ- 202 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTT-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-
T ss_pred HHHHHHHHHHhhhhhhhhhhhhccccccceeeccc-ccccchhhhhhHHHHHHHHHhhhhhhhhhhccccc---ccccc-
Confidence 356666666665555 66666443 33321 134567789999999999998888 5666555552 11211
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHH----HHHHHHHHHHHHHHHhhh
Q 002856 119 PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSI----TRHKAHIMKLELILRLLD 193 (873)
Q Consensus 119 ~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~i----erhk~Hi~kLE~lLRlL~ 193 (873)
......++..-++.-|.+++.++..+++++++|..++..- ..++.+++... +.|.-+|..||.-|+-|.
T Consensus 203 -----~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~L-e~~l~~le~~~~~~~~~~~~~i~~le~el~~l~ 275 (312)
T PF00038_consen 203 -----QSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASL-ERQLRELEQRLDEEREEYQAEIAELEEELAELR 275 (312)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhh-hhhHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 1122344556667778888888888888888874432110 12344443322 345566666665555444
No 14
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.69 E-value=2.6 Score=53.67 Aligned_cols=146 Identities=25% Similarity=0.273 Sum_probs=90.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhhccc--cccccccchhhHHHHHHHHHHHHHHHHHHHHH-Hhhhccccccccc
Q 002856 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS--EIKDKKVSASYEQALVDARKLIEREMERFKIC-EKETKTKAFSKEG 114 (873)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~--eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~v-EKe~KtKafSkEG 114 (873)
.++++|+++++|.++--++-+--||+.-=... .+-|++ .|.+.++.||.-=-.+-++ |+..| |+= .++
T Consensus 819 ~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~-------~l~~~~~~ie~l~kE~e~~qe~~~K-k~~-i~~ 889 (1293)
T KOG0996|consen 819 ENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKK-------RLKELEEQIEELKKEVEELQEKAAK-KAR-IKE 889 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHH-------HHHHHHHHHHHHHHHHHHHHHhhhH-HHH-HHH
Confidence 56799999999999998888888888765552 222555 6777777776533333333 44333 221 111
Q ss_pred cCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002856 115 LGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (873)
Q Consensus 115 L~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N 194 (873)
| +.++|- --.+-..--++-|+.++.|++.++++|-++..+. ++....++.++..+.+|..-|..+|.=+.-|.-
T Consensus 890 l--q~~i~~---i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i-~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e 963 (1293)
T KOG0996|consen 890 L--QNKIDE---IGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAI-KTSDRNIAKAQKKLSELEREIEDTEKELDDLTE 963 (1293)
T ss_pred H--HHHHHH---hhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111121 1111222235678999999999999998886543 233356777888888888888877775555544
Q ss_pred CCCC
Q 002856 195 DELS 198 (873)
Q Consensus 195 ~~l~ 198 (873)
+..+
T Consensus 964 ~~~~ 967 (1293)
T KOG0996|consen 964 ELKG 967 (1293)
T ss_pred HHhh
Confidence 4433
No 15
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=92.37 E-value=1.1 Score=48.57 Aligned_cols=173 Identities=18% Similarity=0.264 Sum_probs=79.6
Q ss_pred HHHHHHHHhhcC-CC-chhHHHHHHHHHHHHHHHHHhH----HHHHHhhc--cccccccccchhhHHHHHHHHHHHHHHH
Q 002856 24 VFDSIWNKVYDT-DN-ANQKEKFEADLKKEIKKLQRYR----DQIKTWIQ--SSEIKDKKVSASYEQALVDARKLIEREM 95 (873)
Q Consensus 24 ~Fd~i~~K~~~a-~n-~nQKEKlE~DLKKEIKKLQR~R----DQIKtW~~--s~eIKDK~~~~~~~~~L~e~Rk~IE~~M 95 (873)
.|...|+.+... +. +++...|-.-|+.+|+.|.+++ .+-|.|-. .+-+|--..-+.....|..+|+.-|..
T Consensus 64 t~~~~~~~~~~e~e~~a~~H~~la~~L~~~~~~l~~~~~~~~k~rK~~ke~~~~~~~~~~~~~~~~~~~~KaK~~Y~~~- 142 (269)
T cd07673 64 TFAPVWDVFKTSTEKLANCHLELVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQNIQSITQALQKSKENYNAK- 142 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 366667777332 22 3455555555555555565555 34455521 111111110122223455555555432
Q ss_pred HHHHHHHhhhccccccccccCCCCCCCchHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHH
Q 002856 96 ERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE-----TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTH 170 (873)
Q Consensus 96 ErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E-----~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~ 170 (873)
.++.||-.| ++. .+++.+|.. +.+=...+|+.|+.--..++.++...-.+=-.-..+||..
T Consensus 143 --c~e~e~~~~------~~~------t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~ 208 (269)
T cd07673 143 --CLEQERLKK------EGA------TQREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIR 208 (269)
T ss_pred --HHHHHHHHh------cCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234454433 221 122322221 3333466666666665566666544311100112346666
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCC
Q 002856 171 LETSITRHKAHIMKL--------ELILRLLDNDELSPEQVNDVKDLLEDYVERNQDD 219 (873)
Q Consensus 171 le~~ierhk~Hi~kL--------E~lLRlL~N~~l~pe~V~~ikddieyYve~nqdd 219 (873)
+...+-.+-.|+..- |.|-+.|++ -++..||..||+++...
T Consensus 209 ~k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~--------~d~~~Di~~fi~~~gTG 257 (269)
T cd07673 209 IKEIIGSYSNSVKEIHIQIGQVHEEFINNMAN--------TTVESLIQKFAESKGTG 257 (269)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHh--------CCHHHHHHHHHHhcCCC
Confidence 666665554444332 333332222 13568899999988763
No 16
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.90 E-value=7 Score=46.58 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhCCCCChhhhh----hhhhHHHHHHH
Q 002856 181 HIMKLELILRLLDNDELSPEQVN----DVKDLLEDYVE 214 (873)
Q Consensus 181 Hi~kLE~lLRlL~N~~l~pe~V~----~ikddieyYve 214 (873)
.-.+++.|.+.|+.|.|+.+.|+ ++.++++++.+
T Consensus 453 ~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~ 490 (569)
T PRK04778 453 VSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEE 490 (569)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888999987777 46666666554
No 17
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.89 E-value=7.7 Score=45.11 Aligned_cols=97 Identities=27% Similarity=0.254 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002856 80 YEQALVDARKLIEREMERFKICEKETKT--KAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 80 ~~~~L~e~Rk~IE~~MErFK~vEKe~Kt--KafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls 157 (873)
.-+-|.+.++..++..+.|+.||+|.+. |--|..|. +-.+.|+..-+...|-+|+.|+|..+.|++.+
T Consensus 263 ~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~---------e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~l- 332 (446)
T KOG4438|consen 263 AMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGV---------EYDSLETKVVELKEILELEDQIELNQLELEKL- 332 (446)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhh---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4456888999999999999999999762 22232232 34556777778889999999999999998776
Q ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 002856 158 VKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDEL 197 (873)
Q Consensus 158 ~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l 197 (873)
--.+.+..|..-|+...|...+-++|...
T Consensus 333 -----------k~~e~~~kqL~~~~kek~~~~Qd~~~r~~ 361 (446)
T KOG4438|consen 333 -----------KMFENLTKQLNELKKEKESRRQDLENRKT 361 (446)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 12455666666777666666666666554
No 18
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=91.84 E-value=3.9 Score=50.98 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhHHH
Q 002856 45 EADLKKEIKKLQRYRDQ 61 (873)
Q Consensus 45 E~DLKKEIKKLQR~RDQ 61 (873)
-.+|++++++|+|+++.
T Consensus 193 ~~~L~~q~~~l~~~~e~ 209 (1164)
T TIGR02169 193 IDEKRQQLERLRREREK 209 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36788888888888883
No 19
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=91.57 E-value=1.5 Score=46.82 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHH
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLE 210 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddie 210 (873)
+.+=....|+.++.--..++.++...-.+=-.-...||..+...+-.+--|+...=..+.-+-++-...=+--++..||.
T Consensus 162 a~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~~~~~~~~~e~~~~~~~~id~~~Di~ 241 (261)
T cd07648 162 AQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSENHSAVGQVHEEFKRQVDELTVDKLLR 241 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHH
Confidence 33344556666655555565555432111011123577777777777666664422222211111111111113567899
Q ss_pred HHHHhCCC
Q 002856 211 DYVERNQD 218 (873)
Q Consensus 211 yYve~nqd 218 (873)
.||+++..
T Consensus 242 ~fv~~~gt 249 (261)
T cd07648 242 QFVESKGT 249 (261)
T ss_pred HHHHcCCC
Confidence 99998875
No 20
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.50 E-value=14 Score=49.23 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCC
Q 002856 166 PRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQ 217 (873)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~nq 217 (873)
..+..++..+..|+--+.+||..=.++....|+.+++.+..+..+.-++...
T Consensus 404 qel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e 455 (1486)
T PRK04863 404 QALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEAT 455 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567778888889999999999999999999999988877776666665443
No 21
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.09 E-value=1.9 Score=55.28 Aligned_cols=12 Identities=42% Similarity=0.792 Sum_probs=5.1
Q ss_pred ccCCccccccCC
Q 002856 222 EFSDVDELYHLL 233 (873)
Q Consensus 222 ef~dde~iYd~L 233 (873)
+|++...-|+.|
T Consensus 971 e~e~~~~r~~~l 982 (1163)
T COG1196 971 EYEEVEERYEEL 982 (1163)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 22
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=90.91 E-value=0.98 Score=44.12 Aligned_cols=88 Identities=24% Similarity=0.391 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc------ccCCCCc-----hhhHHHHHHHHHHHHHHHHHHHHH---------
Q 002856 130 ETRDWLNNLVSELESQIDSFEAELEGLTV------KKGKTRP-----PRLTHLETSITRHKAHIMKLELIL--------- 189 (873)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~------KK~K~~~-----~r~~~le~~ierhk~Hi~kLE~lL--------- 189 (873)
|+..=|+.+++.|++++..+|.+++.+.. |+|++.. .++-.++..+++......+||.++
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455788899999999999999988742 3343321 134445555555544555555443
Q ss_pred --------------HhhhCCCCChhhhhhhhhHHHHHHHhCCC
Q 002856 190 --------------RLLDNDELSPEQVNDVKDLLEDYVERNQD 218 (873)
Q Consensus 190 --------------RlL~N~~l~pe~V~~ikddieyYve~nqd 218 (873)
+.+ |..++.+.|+++.|+|+.-++..++
T Consensus 81 ~~v~~al~~~~~~Lk~~-~~~i~~~~v~~~~d~~~e~~e~~~e 122 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKI-NKQINLDKVEKLMDDFQEEMEDQDE 122 (171)
T ss_dssp HHHSSS----SHHHHHH-HHSTTSCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 333 5568999999999999999987654
No 23
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.71 E-value=4.6 Score=49.69 Aligned_cols=160 Identities=15% Similarity=0.194 Sum_probs=72.8
Q ss_pred HhhhHHHhHHHHHHHH-HHhhcCCCchh-HH-HHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHH
Q 002856 14 VLKKVQEGVDVFDSIW-NKVYDTDNANQ-KE-KFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKL 90 (873)
Q Consensus 14 ~lKKV~EGve~Fd~i~-~K~~~a~n~nQ-KE-KlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~ 90 (873)
||.=+.+.++.|-+-| +|++-+-..=| |- -|....++.+++|+.+++.++.-....+ +|.| +
T Consensus 537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae------------~Lae---R 601 (717)
T PF10168_consen 537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAE------------KLAE---R 601 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH---H
Confidence 5555667777777665 55554322222 11 1344455566667777776665432211 3333 2
Q ss_pred HHHHHHHHHHHHhhhccc---c-ccccccCCCCCCCchHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC-
Q 002856 91 IEREMERFKICEKETKTK---A-FSKEGLGQQPKTDPKEKAKS-ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR- 164 (873)
Q Consensus 91 IE~~MErFK~vEKe~KtK---a-fSkEGL~~~~k~Dp~ekek~-E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~- 164 (873)
||+..|+-+.+++.++.= . .-.-.|..+++.--+|.++. +..+-|...|++++++++..+..++ +.++.+++
T Consensus 602 ~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~--~~~~~~~~s 679 (717)
T PF10168_consen 602 YEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE--SQKSPKKKS 679 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccCCC
Confidence 444444444444433310 0 00111322211111111111 1233456666666666666666555 22222222
Q ss_pred ----chhhHHHHHHHHHHHHHHHHHHHHHH
Q 002856 165 ----PPRLTHLETSITRHKAHIMKLELILR 190 (873)
Q Consensus 165 ----~~r~~~le~~ierhk~Hi~kLE~lLR 190 (873)
......++..+..+--||+.|=.-++
T Consensus 680 ~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik 709 (717)
T PF10168_consen 680 IVLSESQKRTIKEILKQQGEEIDELVKQIK 709 (717)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455566666666666665543333
No 24
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=90.68 E-value=3.1 Score=38.91 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=50.3
Q ss_pred HHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-----ccccccccCCCCCCCch
Q 002856 50 KEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKT-----KAFSKEGLGQQPKTDPK 124 (873)
Q Consensus 50 KEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~Kt-----KafSkEGL~~~~k~Dp~ 124 (873)
..|.++|++|+++. .|...|..||.+....+.+-+|.+. +-|-..|=+. -
T Consensus 3 ~~~~~~q~l~~~~~-------------------~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vf------v 57 (105)
T cd00632 3 EQLAQLQQLQQQLQ-------------------AYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVL------V 57 (105)
T ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHH------h
Confidence 36788889988875 5666677777777666666666553 4454444432 2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
+..+.++...|.+-++.|...|+.++.+++.+
T Consensus 58 ~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l 89 (105)
T cd00632 58 KQEKEEARTELKERLETIELRIKRLERQEEDL 89 (105)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666555443
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.16 E-value=5.4 Score=50.68 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=42.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cCCC----CchhhHHHHHHHHHHHHHHHHHH
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK--KGKT----RPPRLTHLETSITRHKAHIMKLE 186 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~K--K~K~----~~~r~~~le~~ierhk~Hi~kLE 186 (873)
-.+.+.-..||+.-|+.|+.|+..|..|++.+..+ .... -..++..|...|+...+||..|.
T Consensus 396 ~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 396 LEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677899999999999999999888887432 1111 12456667777777777776654
No 26
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.08 E-value=3.9 Score=49.22 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=28.9
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC
Q 002856 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN 37 (873)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n 37 (873)
-|.|||-+.|+-.+|...|=+||+++.++..
T Consensus 71 yQ~EiD~LtkRsk~aE~afl~vye~L~eaPD 101 (629)
T KOG0963|consen 71 YQSEIDNLTKRSKFAEAAFLDVYEKLIEAPD 101 (629)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhCCC
Confidence 3889999999999999999999999998865
No 27
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.75 E-value=6.8 Score=50.22 Aligned_cols=163 Identities=18% Similarity=0.255 Sum_probs=87.8
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC--chhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccc-cchhhHH
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK-VSASYEQ 82 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n--~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~-~~~~~~~ 82 (873)
|+|.||+.|.+...-.-..-|++.+++..-+. .+-++|+|..|-...+++++.|-.+.-- .+|.++-. -....-.
T Consensus 444 ~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~va--esel~~L~~~~~~~~~ 521 (1293)
T KOG0996|consen 444 KCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVA--ESELDILLSRHETGLK 521 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 45666666666555555666666666654332 3346666666766666666666655422 22222111 0000001
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---
Q 002856 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK--- 159 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~K--- 159 (873)
++.+..+.++..|+. .++.+.++ +=+...|..++..+...+.+++.+...
T Consensus 522 ~~e~lk~~L~~~~~~--------------------------~~e~~~~l-~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~ 574 (1293)
T KOG0996|consen 522 KVEELKGKLLASSES--------------------------LKEKKTEL-DDLKEELPSLKQELKEKEKELPKLRKEERN 574 (1293)
T ss_pred HHHHHHHHHHHHHHH--------------------------HHHHHHHH-HHHHHhhhhHHHHHHHHHHhHHHHHHHHHH
Confidence 222222222222222 12233333 334456777777777778887776321
Q ss_pred -cCC--CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 002856 160 -KGK--TRPPRLTHLETSITRHKAHIMKLELILRLLDNDEL 197 (873)
Q Consensus 160 -K~K--~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l 197 (873)
+.. +.-+|++++...+...+.-=.-|..|+|+=++|.|
T Consensus 575 ~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i 615 (1293)
T KOG0996|consen 575 LKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRI 615 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCC
Confidence 111 11357888888777777767779999998888876
No 28
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.49 E-value=0.68 Score=53.35 Aligned_cols=84 Identities=29% Similarity=0.359 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh------cccCCCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHhhhCC----
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLT------VKKGKTRP-----PRLTHLETSITRHKAHIMKLELILRLLDND---- 195 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls------~KK~K~~~-----~r~~~le~~ierhk~Hi~kLE~lLRlL~N~---- 195 (873)
...=|...+..|.+|||.+|.|+|+.. .|+|+|+- .+..-+++.++|.---..+||.||--+++-
T Consensus 234 ~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nk 313 (439)
T KOG2911|consen 234 SVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNK 313 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccH
Confidence 445577889999999999999999874 36666542 133446667788777888899988777653
Q ss_pred -------------------CCChhhhhhhhhHHHHHHH
Q 002856 196 -------------------ELSPEQVNDVKDLLEDYVE 214 (873)
Q Consensus 196 -------------------~l~pe~V~~ikddieyYve 214 (873)
.+.+|.|+++-|+|+.-++
T Consensus 314 vvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d 351 (439)
T KOG2911|consen 314 VVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLD 351 (439)
T ss_pred HHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHh
Confidence 3556666666666655554
No 29
>PHA00425 DNA packaging protein, small subunit
Probab=88.62 E-value=1.1 Score=41.23 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhhhcccC----CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCC
Q 002856 142 LESQIDSFEAELEGLTVKKG----KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQ 217 (873)
Q Consensus 142 L~~QiE~~EaE~E~Ls~KK~----K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~nq 217 (873)
|.+=+|.+..|+..+-..-- |..+.=-..|.+.++||||||.||- .|..-+-++-+-++.|-+--.
T Consensus 6 L~k~LemlDTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RHkF~isKl~----------pD~~iLg~la~~l~ey~~~~g 75 (88)
T PHA00425 6 LIKFLEMLDTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRHKFQISKLQ----------PDENILGGLAAALEEYKEKVG 75 (88)
T ss_pred HHHHHHHHhHHHHHHHHHHhcCccccChHHHHHHHHHHHHhcccccccC----------CcHHHHHHHHHHHHHHHHhcC
Confidence 44455667777666532211 2333445678888999999999983 344445567788888877555
Q ss_pred C
Q 002856 218 D 218 (873)
Q Consensus 218 d 218 (873)
.
T Consensus 76 ~ 76 (88)
T PHA00425 76 A 76 (88)
T ss_pred C
Confidence 4
No 30
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=88.38 E-value=9.4 Score=49.20 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 002856 166 PRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (873)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~ 196 (873)
.++..++..+.+++.+...|+.-|+.|....
T Consensus 870 ~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~ 900 (1163)
T COG1196 870 AEKEELEDELKELEEEKEELEEELRELESEL 900 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777888888888888887776543
No 31
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=88.19 E-value=20 Score=37.79 Aligned_cols=45 Identities=24% Similarity=0.451 Sum_probs=34.9
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH
Q 002856 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR 57 (873)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR 57 (873)
|.--+|.++|++..|+..++++.+=+ ..|-++|.+-=|.++||-+
T Consensus 3 L~d~~~~l~~~~~~g~~~~~~l~~f~------keRa~iE~eYak~L~kLa~ 47 (251)
T cd07653 3 LWDQFDNLEKHTQKGIDFLERYGKFV------KERAAIEQEYAKKLRKLVK 47 (251)
T ss_pred chhhhHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 45568899999999999999988776 3467777777777777643
No 32
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=88.11 E-value=8.9 Score=40.71 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCCCccCCccccccC
Q 002856 181 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHL 232 (873)
Q Consensus 181 Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~nqddf~ef~dde~iYd~ 232 (873)
+...+..++..+ ..++-+.|.-+|+.|--|-..--. -+..||..|++
T Consensus 190 ~~~~~~~~~~~~--Q~lEe~Ri~~lk~~l~~y~n~is~---~cv~~d~~~e~ 236 (239)
T cd07647 190 WESEHATACQVF--QNMEEERIKFLRNALWVHCNLGSM---QCVKLDEMYED 236 (239)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHH---HHccchHHHHH
Confidence 344444455555 456788888899888888643222 23345566654
No 33
>PRK02224 chromosome segregation protein; Provisional
Probab=87.95 E-value=27 Score=43.22 Aligned_cols=27 Identities=7% Similarity=-0.016 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 167 RLTHLETSITRHKAHIMKLELILRLLD 193 (873)
Q Consensus 167 r~~~le~~ierhk~Hi~kLE~lLRlL~ 193 (873)
+++++...+..++..+..++..|+.+.
T Consensus 420 ~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 420 ERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555554
No 34
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.88 E-value=29 Score=40.44 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 002856 136 NNLVSELESQIDSFEAELEGLTV 158 (873)
Q Consensus 136 ~~~IdeL~~QiE~~EaE~E~Ls~ 158 (873)
++.|+++..+...++++++.|..
T Consensus 350 ~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 350 KQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666677777777743
No 35
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.81 E-value=19 Score=40.04 Aligned_cols=103 Identities=21% Similarity=0.301 Sum_probs=62.7
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHH
Q 002856 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLI 91 (873)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~I 91 (873)
+.-.+.+.+.++..+.++.++ .+.-+.|++||..|+..-+. -+.-|+. .|...|..|
T Consensus 162 ~~D~~~L~~~~~~l~~~~~~l---------~~~~~~L~~e~~~Lk~~~~e-------~~~~D~~-------eL~~lr~eL 218 (325)
T PF08317_consen 162 QEDYAKLDKQLEQLDELLPKL---------RERKAELEEELENLKQLVEE-------IESCDQE-------ELEALRQEL 218 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhh-------hhhcCHH-------HHHHHHHHH
Confidence 334455555566666666655 23445677777777665444 2344555 777777777
Q ss_pred HHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002856 92 EREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 92 E~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls 157 (873)
...++......++ -.+..+-...+...|++++.++..++++|+.+.
T Consensus 219 ~~~~~~i~~~k~~--------------------l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 219 AEQKEEIEAKKKE--------------------LAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766663322211 123344556777788888888888888887774
No 36
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=87.60 E-value=9 Score=36.27 Aligned_cols=84 Identities=15% Similarity=0.265 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-----ccccccccCCCCCC
Q 002856 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKT-----KAFSKEGLGQQPKT 121 (873)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~Kt-----KafSkEGL~~~~k~ 121 (873)
.|...|.++|++|.+|+ .|...|..+|.++...+.+.++.+. +-|---|=+.
T Consensus 4 ~~q~~~~~~q~~q~~~~-------------------~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vl---- 60 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQ-------------------AVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLL---- 60 (110)
T ss_pred HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhh----
Confidence 46678999999999986 5677777777777777777766543 3333333221
Q ss_pred CchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEG 155 (873)
Q Consensus 122 Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~ 155 (873)
-++.+.++..-|++-|+.|+..|+.++..++.
T Consensus 61 --v~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~ 92 (110)
T TIGR02338 61 --VKTDKEEAIQELKEKKETLELRVKTLQRQEER 92 (110)
T ss_pred --heecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13445555555555555554444444444433
No 37
>PRK02224 chromosome segregation protein; Provisional
Probab=87.46 E-value=5.6 Score=49.00 Aligned_cols=15 Identities=7% Similarity=0.071 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 002856 135 LNNLVSELESQIDSF 149 (873)
Q Consensus 135 L~~~IdeL~~QiE~~ 149 (873)
+++-|.+|+.+|+.+
T Consensus 625 ~~~~l~~~r~~i~~l 639 (880)
T PRK02224 625 RRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555555544
No 38
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=87.39 E-value=8 Score=43.29 Aligned_cols=112 Identities=22% Similarity=0.324 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC
Q 002856 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k 120 (873)
.-|+..-|.|-+|.|||+= -.|..||-.|+++|+-= .|.+
T Consensus 148 ~KKlg~nIEKSvKDLqRct----------------------vSL~RYr~~lkee~d~S---~k~i--------------- 187 (302)
T PF07139_consen 148 NKKLGPNIEKSVKDLQRCT----------------------VSLTRYRVVLKEEMDSS---IKKI--------------- 187 (302)
T ss_pred ccccCccHHHHHHHHHHHH----------------------HHHHhhhhHHHHHHHHH---HHHH---------------
Confidence 4577788999999999983 17999999999999861 1111
Q ss_pred CCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCh
Q 002856 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN-DELSP 199 (873)
Q Consensus 121 ~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N-~~l~p 199 (873)
..+.+=|..||- ..--.|=+|+++. -++.++-...+..+-|.|=|+-+- ..+..
T Consensus 188 --------k~~F~~l~~cL~---dREvaLl~EmdkV--------------K~EAmeiL~aRqkkAeeLkrltd~A~~MsE 242 (302)
T PF07139_consen 188 --------KQTFAELQSCLM---DREVALLAEMDKV--------------KAEAMEILDARQKKAEELKRLTDRASQMSE 242 (302)
T ss_pred --------HHHHHHHHHHHH---HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 112222333332 1222333444443 122444445555666666666553 34789
Q ss_pred hhhhhhhhHHHHHHHhCC
Q 002856 200 EQVNDVKDLLEDYVERNQ 217 (873)
Q Consensus 200 e~V~~ikddieyYve~nq 217 (873)
++|-+|+-||.+||-.-.
T Consensus 243 ~Ql~ELRadIK~fvs~rk 260 (302)
T PF07139_consen 243 EQLAELRADIKHFVSERK 260 (302)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 999999999999997544
No 39
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=87.22 E-value=8.7 Score=48.05 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 002856 182 IMKLELILR 190 (873)
Q Consensus 182 i~kLE~lLR 190 (873)
+.+|+.=|+
T Consensus 960 l~~l~~~i~ 968 (1164)
T TIGR02169 960 LQRVEEEIR 968 (1164)
T ss_pred HHHHHHHHH
Confidence 333333333
No 40
>PRK03918 chromosome segregation protein; Provisional
Probab=87.10 E-value=22 Score=43.77 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002856 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls 157 (873)
..+.+..+-+..-|.+|+.++..++.+++.+.
T Consensus 448 ~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~ 479 (880)
T PRK03918 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLR 479 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777776664
No 41
>PTZ00464 SNF-7-like protein; Provisional
Probab=86.83 E-value=2.8 Score=44.46 Aligned_cols=90 Identities=14% Similarity=0.274 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cccCCC------Cc------hhhHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 002856 129 SETRDWLNNLVSELESQIDSFEAELEGLT--VKKGKT------RP------PRLTHLETSITRHKAHIMKLELILRLLD- 193 (873)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls--~KK~K~------~~------~r~~~le~~ierhk~Hi~kLE~lLRlL~- 193 (873)
.++..=|.+-++.|.++|+.++.|++... .|++|. +. .|+--++..+++..-++.+||.++-.|+
T Consensus 17 ~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~ 96 (211)
T PTZ00464 17 EDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTES 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557788899999999999999887773 222221 10 0222233333333333444443332221
Q ss_pred ---------------------CCCCChhhhhhhhhHHHHHHHhCCC
Q 002856 194 ---------------------NDELSPEQVNDVKDLLEDYVERNQD 218 (873)
Q Consensus 194 ---------------------N~~l~pe~V~~ikddieyYve~nqd 218 (873)
|..++.|+|++|.|+|+..++...+
T Consensus 97 a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~E 142 (211)
T PTZ00464 97 VKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQE 142 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999985443
No 42
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=86.59 E-value=2 Score=39.27 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhhhcccC----CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCC
Q 002856 142 LESQIDSFEAELEGLTVKKG----KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQ 217 (873)
Q Consensus 142 L~~QiE~~EaE~E~Ls~KK~----K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~nq 217 (873)
|.+=+|.+..|+...-..-- |..+.=-..+.++++||||||.||- .|.+.+-++.+-++.|-+.-.
T Consensus 4 L~klLemlDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF~iskl~----------pd~~~LG~L~~aL~ey~~~~g 73 (82)
T PF11123_consen 4 LEKLLEMLDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKFQISKLQ----------PDENILGELAAALEEYKKMVG 73 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccchhhhcC----------ccHHHHHHHHHHHHHHHHHcC
Confidence 34445666666655432211 2333445678889999999999983 456667789999999987655
Q ss_pred C
Q 002856 218 D 218 (873)
Q Consensus 218 d 218 (873)
.
T Consensus 74 ~ 74 (82)
T PF11123_consen 74 A 74 (82)
T ss_pred C
Confidence 4
No 43
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.39 E-value=17 Score=45.25 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=30.8
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcC-CCchhHHHHHHHHHHHH---HHHHHhHH
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDT-DNANQKEKFEADLKKEI---KKLQRYRD 60 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a-~n~nQKEKlE~DLKKEI---KKLQR~RD 60 (873)
|-|.|+||--+-+.|--.-=.+--++.+.. ..-.+||+.|.+-|+++ |.|+|.|+
T Consensus 324 kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQRe 382 (1118)
T KOG1029|consen 324 KGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQRE 382 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777776555444322211222222222 22346888888888876 66888775
No 44
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=86.25 E-value=12 Score=46.79 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 002856 132 RDWLNNLVSELESQIDSFEAELE 154 (873)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaE~E 154 (873)
..|+.+.+.++..+++.+++++.
T Consensus 649 ~~~~~~~l~~~~~~~~~~~~~~~ 671 (908)
T COG0419 649 EELLQAALEELEEKVEELEAEIR 671 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566666666666665
No 45
>PRK11637 AmiB activator; Provisional
Probab=85.74 E-value=26 Score=40.19 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002856 82 QALVDARKLIEREMERFK 99 (873)
Q Consensus 82 ~~L~e~Rk~IE~~MErFK 99 (873)
..|.+.++.+..+|....
T Consensus 117 ~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 117 QQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555555555554443
No 46
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.36 E-value=8.4 Score=40.08 Aligned_cols=99 Identities=25% Similarity=0.396 Sum_probs=54.3
Q ss_pred ccccCCCCCCC--------c--hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCc-hhhHHHHHHHHHHHH
Q 002856 112 KEGLGQQPKTD--------P--KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRP-PRLTHLETSITRHKA 180 (873)
Q Consensus 112 kEGL~~~~k~D--------p--~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~-~r~~~le~~ierhk~ 180 (873)
.+||...+|.. | .-..+....+=|+.-|+.++..++.++.+++.+ ++++... +|...|+ .++..+-
T Consensus 41 DDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~--~~~r~~~~eR~~~l~-~l~~l~~ 117 (188)
T PF03962_consen 41 DDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA--KKGREESEEREELLE-ELEELKK 117 (188)
T ss_pred ccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccccHHHHHHHH-HHHHHHH
Confidence 35666555544 2 123444455556666666666666666666665 4444433 3333222 2222333
Q ss_pred HHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHh
Q 002856 181 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (873)
Q Consensus 181 Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~ 215 (873)
.+..|+.=|. .-...||+.|..+++++..+++.
T Consensus 118 ~~~~l~~el~--~~~~~Dp~~i~~~~~~~~~~~~~ 150 (188)
T PF03962_consen 118 ELKELKKELE--KYSENDPEKIEKLKEEIKIAKEA 150 (188)
T ss_pred HHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHH
Confidence 3333433333 22335899999999988887774
No 47
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.29 E-value=41 Score=41.19 Aligned_cols=95 Identities=25% Similarity=0.251 Sum_probs=62.2
Q ss_pred chHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhh-cccCCCCchhhHHHHHHHHHHHHHHH-HHHHHHHhhhCCCC
Q 002856 123 PKEKAKSETRDWLN---NLVSELESQIDSFEAELEGLT-VKKGKTRPPRLTHLETSITRHKAHIM-KLELILRLLDNDEL 197 (873)
Q Consensus 123 p~ekek~E~~~wL~---~~IdeL~~QiE~~EaE~E~Ls-~KK~K~~~~r~~~le~~ierhk~Hi~-kLE~lLRlL~N~~l 197 (873)
..||++.|+.+=+. +.|++++ |+---|-+-|.|+ .+|+|.....+..|++..+--+..+. -|+.+.+-|.-+..
T Consensus 192 alEkeq~e~E~K~R~se~l~qevn-~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e 270 (861)
T KOG1899|consen 192 ALEKEQNETEKKLRLSENLMQEVN-QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGE 270 (861)
T ss_pred HHHHHhhhHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhccc
Confidence 34677766655554 4566666 5555555566675 47777666677778877744444444 44555555544443
Q ss_pred -ChhhhhhhhhHHHHHHHhCCC
Q 002856 198 -SPEQVNDVKDLLEDYVERNQD 218 (873)
Q Consensus 198 -~pe~V~~ikddieyYve~nqd 218 (873)
-.++++.+|-.+|--+..|.+
T Consensus 271 ~~~~rd~~lk~a~eslm~ane~ 292 (861)
T KOG1899|consen 271 HKSLRDNTLKNALESLMRANEQ 292 (861)
T ss_pred chhhHHHHHHHHHHHHHhhchh
Confidence 378888999999999999865
No 48
>PRK09343 prefoldin subunit beta; Provisional
Probab=85.13 E-value=16 Score=35.52 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002856 44 FEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETK 106 (873)
Q Consensus 44 lE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~K 106 (873)
+-..|-.+|.+||.++++|+ .+...|..+|.++-..+.+-+|.+
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~-------------------~~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLE-------------------RLLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999987 566667777777766666665554
No 49
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=85.12 E-value=2.1 Score=44.32 Aligned_cols=63 Identities=25% Similarity=0.465 Sum_probs=39.0
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccc-cccccccchhhHHHH
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS-EIKDKKVSASYEQAL 84 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~-eIKDK~~~~~~~~~L 84 (873)
.+|+|++.+|.+...-|+. .+.|||.|||+|.+-=+++..=+... .+|+|.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~-------------------~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa--------- 153 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQ-------------------TKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKA--------- 153 (171)
T ss_dssp --------HHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 4678888888888766654 45789999999887777776655432 344444
Q ss_pred HHHHHHHHHHHHHHHH
Q 002856 85 VDARKLIEREMERFKI 100 (873)
Q Consensus 85 ~e~Rk~IE~~MErFK~ 100 (873)
-.+|.+.|+|+.
T Consensus 154 ----~~L~~eL~~F~~ 165 (171)
T PF04799_consen 154 ----NWLESELERFQE 165 (171)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH
Confidence 678889999964
No 50
>PRK03918 chromosome segregation protein; Provisional
Probab=84.90 E-value=21 Score=44.03 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 002856 176 TRHKAHIMKLELILRLLD 193 (873)
Q Consensus 176 erhk~Hi~kLE~lLRlL~ 193 (873)
++.+-.+..|+.+-+-+.
T Consensus 365 ~~~~~~~~~l~~l~~~l~ 382 (880)
T PRK03918 365 EEAKAKKEELERLKKRLT 382 (880)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 333334444444444444
No 51
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.74 E-value=45 Score=42.78 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh----cccCC--CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-----------hh
Q 002856 138 LVSELESQIDSFEAELEGLT----VKKGK--TRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-----------PE 200 (873)
Q Consensus 138 ~IdeL~~QiE~~EaE~E~Ls----~KK~K--~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~-----------pe 200 (873)
.+.++...+++..-.+|.+. .++++ +...+-......++-.+-||++|+.-|+.|..+.=- .+
T Consensus 407 ~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~ 486 (1174)
T KOG0933|consen 407 TLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHE 486 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 34444444444444444442 12332 223444555667788889999999999988765431 23
Q ss_pred hhhhhhhHHHHHHHhC
Q 002856 201 QVNDVKDLLEDYVERN 216 (873)
Q Consensus 201 ~V~~ikddieyYve~n 216 (873)
.+..++|.+++.....
T Consensus 487 ~~~~lk~~~~~l~a~~ 502 (1174)
T KOG0933|consen 487 DIGRLKDELDRLLARL 502 (1174)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4455666666666544
No 52
>PRK01156 chromosome segregation protein; Provisional
Probab=84.55 E-value=39 Score=42.13 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=31.5
Q ss_pred cccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002856 113 EGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 113 EGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls 157 (873)
+|.+......-.+.-+.+...++..-|.+|+.+++.++.+++.|.
T Consensus 452 ~~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~ 496 (895)
T PRK01156 452 QSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDID 496 (895)
T ss_pred CCCCCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566543322223556677888888888888888888888887764
No 53
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=84.46 E-value=4.8 Score=53.62 Aligned_cols=103 Identities=25% Similarity=0.350 Sum_probs=64.6
Q ss_pred CccccchhhhHHHHhhhHHHhHHHHHHH----HHHhhcCCCchhHHHHH------HHHHHHHHHHHHhHHHHHHhhcc--
Q 002856 1 MGASRKLQGEIDRVLKKVQEGVDVFDSI----WNKVYDTDNANQKEKFE------ADLKKEIKKLQRYRDQIKTWIQS-- 68 (873)
Q Consensus 1 Maa~RKLQ~EIDr~lKKV~EGve~Fd~i----~~K~~~a~n~nQKEKlE------~DLKKEIKKLQR~RDQIKtW~~s-- 68 (873)
|+...||+-|.||+.++.++-++-+.++ |+|+.+ +..+.|++++ +||++++.+|| .+||.-+..
T Consensus 1277 ~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~-ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~ 1352 (1822)
T KOG4674|consen 1277 VAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKS-EISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELN 1352 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4667899999999999999999887654 667655 4455555554 58888888888 666665543
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHH--Hhhhccccc
Q 002856 69 SEIKDKKVSASYEQALVDARKLIEREMERFKIC--EKETKTKAF 110 (873)
Q Consensus 69 ~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~v--EKe~KtKaf 110 (873)
++++++. .-.+.|.+.-...+...+-|.+= |...++++.
T Consensus 1353 ~e~~~lt---~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~~ 1393 (1822)
T KOG4674|consen 1353 NEKANLT---KELEQLEDLKTRLAAALSEKNAQELELSDKKKAH 1393 (1822)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 11224444445555555555433 555555543
No 54
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.11 E-value=47 Score=33.65 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002856 82 QALVDARKLIEREMERFKICE 102 (873)
Q Consensus 82 ~~L~e~Rk~IE~~MErFK~vE 102 (873)
..|...+..++.-++.|++++
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665
No 55
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=83.83 E-value=11 Score=51.09 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=40.5
Q ss_pred cccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchh--HHHHHHHHH
Q 002856 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLK 49 (873)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQ--KEKlE~DLK 49 (873)
+.|+|+.|.+.+.+++.|-.+.++.++.++..+...-+ |-|+|.++.
T Consensus 1323 ~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~ 1371 (1930)
T KOG0161|consen 1323 ALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVL 1371 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999987776554 778887665
No 56
>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host [].; PDB: 3DOA_A 2ZBK_F 2HKJ_A 1Z5B_A 1Z5C_B 1MX0_F 1Z5A_A 1MU5_A 1Z59_A.
Probab=83.46 E-value=0.45 Score=54.10 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHH
Q 002856 168 LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 209 (873)
Q Consensus 168 ~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddi 209 (873)
++.++..++..+-=+..||.++..|+.-+ +++++.+|++.+
T Consensus 396 ~~~~~~~i~~~~~el~~l~~~~~~l~~a~-~~~~l~~i~~el 436 (455)
T PF05833_consen 396 IEKLEERIEEAEKELEYLESKLEQLEEAE-DLEELEEIREEL 436 (455)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 33444444444445555666665555332 456666666665
No 57
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.44 E-value=23 Score=41.44 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=66.0
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHH
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALV 85 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~ 85 (873)
..|+||.++-|+|.+--+ ++.|||.+||.-=+.+-+++.||+.-....+-.+|. +-
T Consensus 42 q~q~ei~~~~~~i~~~~~----------------~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~--------I~ 97 (420)
T COG4942 42 QIQKEIAALEKKIREQQD----------------QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ--------IA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh--------HH
Confidence 456666666666655333 355777776666666666667776655444333332 22
Q ss_pred HHHHHH---HH-HHHHHHHHHhhhccccccccccCCC--CCCCchH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002856 86 DARKLI---ER-EMERFKICEKETKTKAFSKEGLGQQ--PKTDPKE-KAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 86 e~Rk~I---E~-~MErFK~vEKe~KtKafSkEGL~~~--~k~Dp~e-kek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls 157 (873)
+..+.| |. +-|++..+.+---.=..+ |+.-. -.+.|++ ....-..-++..+.-++..+|+.|++.+..|.
T Consensus 98 ~~~~~l~~l~~q~r~qr~~La~~L~A~~r~--g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~ 174 (420)
T COG4942 98 DLNARLNALEVQEREQRRRLAEQLAALQRS--GRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLA 174 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 222222 11 235555555443322222 33221 1344444 22344566777777777777777777776663
No 58
>PF13166 AAA_13: AAA domain
Probab=83.32 E-value=39 Score=40.79 Aligned_cols=27 Identities=33% Similarity=0.451 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 130 ETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
...+=++..|++.++.++.++.+.+.+
T Consensus 370 ~~i~~~n~~i~~~n~~~~~~~~~~~~~ 396 (712)
T PF13166_consen 370 SIIDELNELIEEHNEKIDNLKKEQNEL 396 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544
No 59
>PF09745 DUF2040: Coiled-coil domain-containing protein 55 (DUF2040); InterPro: IPR018612 This entry represents a conserved domain of approximately 130 residues of proteins conserved from fungi to humans. Some proteins containing this domain are described as coiled-coil domain-containing protein 55, but the function is unknown.
Probab=82.67 E-value=7.4 Score=38.49 Aligned_cols=98 Identities=26% Similarity=0.427 Sum_probs=62.5
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhH-----------HHHHHHH------------HHHHHHHHHhHHHH
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQK-----------EKFEADL------------KKEIKKLQRYRDQI 62 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQK-----------EKlE~DL------------KKEIKKLQR~RDQI 62 (873)
+.+.++.+.|. .+--|=.||.+|+-|......+.. -||=+.| ..+=+||||-|+.
T Consensus 2 ~~~~~~~~A~~-~DptvfdYD~vYD~m~~~~~~~~~~~~~~~~~~rkpKYi~~Ll~~A~~Rk~E~~~~~ErklqKERe~- 79 (127)
T PF09745_consen 2 QAKKEAQKALE-EDPTVFDYDEVYDDMKAKKEEKKQAKQQEDKEKRKPKYISNLLKAAKRRKRERERAEERKLQKEREA- 79 (127)
T ss_pred chHHHHHHHhc-cCChHhhHHHHHHHHhhhhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 34556666554 455666788999999855443222 2232222 2233566666653
Q ss_pred HHhhccccccccc--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 002856 63 KTWIQSSEIKDKK--VSASYEQALVDARKLIEREMERFKICEKETKTKA 109 (873)
Q Consensus 63 KtW~~s~eIKDK~--~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKa 109 (873)
.+.+..||. |...|-.+|.|.|++-|..-++=...++..+||.
T Consensus 80 ----Eg~~f~dkE~FVT~AYKkkleE~k~~eeee~~~e~~e~~~~~~k~ 124 (127)
T PF09745_consen 80 ----EGDEFADKEKFVTSAYKKKLEERKKWEEEEKRREELEEKNDVTKQ 124 (127)
T ss_pred ----cccccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 344566665 8889999999999999987777666666666654
No 60
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.64 E-value=24 Score=46.25 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHH
Q 002856 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREM 95 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~M 95 (873)
..-++.+|.+.-+.|+.+++.|. +.-....|+..|.+.+..|+..+
T Consensus 607 l~~~~~~l~~~~~eL~~~~~~i~---------~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 607 KNHINNELESKEEQLSSYEDKLF---------DVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---------cCCCchhHHHHHHHHHHHHHHHH
Confidence 44455666666667777777777 11123458889999999999888
No 61
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.63 E-value=43 Score=43.17 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=39.6
Q ss_pred HHHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHhHHHHHH----------------hhccccccccccchhhHHHHHH
Q 002856 24 VFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKT----------------WIQSSEIKDKKVSASYEQALVD 86 (873)
Q Consensus 24 ~Fd~i~~K~~~a~n-~nQKEKlE~DLKKEIKKLQR~RDQIKt----------------W~~s~eIKDK~~~~~~~~~L~e 86 (873)
.+-++++.+..+.. -.++++-=.-|||+||-++-.+++|-. |..=+++ ...|.+
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~---------~~ql~~ 285 (1074)
T KOG0250|consen 215 SYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEV---------ERQLNN 285 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Confidence 33444444433321 234555555677777777777764432 4333332 224555
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccc
Q 002856 87 ARKLIEREMERFKICEKETKTKAFSK 112 (873)
Q Consensus 87 ~Rk~IE~~MErFK~vEKe~KtKafSk 112 (873)
++..|-..=|+-+.|.+.++-+..-.
T Consensus 286 ~~~~i~~~qek~~~l~~ki~~~~~k~ 311 (1074)
T KOG0250|consen 286 QEEEIKKKQEKVDTLQEKIEEKQGKI 311 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444455555666655444433
No 62
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=82.58 E-value=91 Score=35.14 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.0
Q ss_pred HHhhhHHHhHHHHHHHHHHhhcCCC
Q 002856 13 RVLKKVQEGVDVFDSIWNKVYDTDN 37 (873)
Q Consensus 13 r~lKKV~EGve~Fd~i~~K~~~a~n 37 (873)
.+.|+|.||..+|.++-+.++..+.
T Consensus 74 EL~~~I~egr~~~~~~E~et~~~nP 98 (312)
T smart00787 74 ELKKYISEGRDLFKEIEEETLINNP 98 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 4678999999999998887765543
No 63
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=82.51 E-value=20 Score=43.19 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=34.7
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~ 69 (873)
.||..+++|.|.-.|-+..-..+-+.+.. -..+-++++..|..+-++...++.+.|.+....
T Consensus 140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~--l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~ 201 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLKENEQLEEEVEQ--LREEVERLEAELEQEEEEMEQLKQQQKELTESS 201 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777766666555555444421 233455566666555555555555555555444
No 64
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=82.47 E-value=7.9 Score=40.74 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=19.4
Q ss_pred CCCCChhhhhhhhhHHHHHHHhCC
Q 002856 194 NDELSPEQVNDVKDLLEDYVERNQ 217 (873)
Q Consensus 194 N~~l~pe~V~~ikddieyYve~nq 217 (873)
|..++.|+|++|.|+|+..++-.+
T Consensus 124 ~k~~~idkVd~lmDei~E~~e~~~ 147 (191)
T PTZ00446 124 NNEINTQKVEKIIDTIQENKDIQE 147 (191)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999998888443
No 65
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=82.35 E-value=41 Score=41.92 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhhhcccCCC----CchhhHHHHHHHH
Q 002856 141 ELESQIDSFEAELEGLTVKKGKT----RPPRLTHLETSIT 176 (873)
Q Consensus 141 eL~~QiE~~EaE~E~Ls~KK~K~----~~~r~~~le~~ie 176 (873)
+|+..+|.|..|+++ -+++ ...+|+.|+..|.
T Consensus 670 ~LK~k~E~Lk~Evak----a~~~pd~~~k~kieal~~qik 705 (762)
T PLN03229 670 DLKSKIELLKLEVAK----ASKTPDVTEKEKIEALEQQIK 705 (762)
T ss_pred hHHHHHHHHHHHHHh----cCCCCCcchHHHHHHHHHHHH
Confidence 466777777777633 2333 1256777776664
No 66
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=82.15 E-value=18 Score=37.94 Aligned_cols=99 Identities=20% Similarity=0.333 Sum_probs=62.2
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH----HHHHhHHHHHHhhccccccccccchhhHHHH
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIK----KLQRYRDQIKTWIQSSEIKDKKVSASYEQAL 84 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIK----KLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L 84 (873)
.|+.+++-+.+|-|..+-.-+.+.... +.++++.|| .|+|.+|+|+....-.+-|+-....-+...|
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~---------~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL 127 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQ---------ERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKL 127 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence 456666666666666666665555332 445666666 7889999999877665444433334455667
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--ccccccccccC
Q 002856 85 VDARKLIEREMERFKICEKET--KTKAFSKEGLG 116 (873)
Q Consensus 85 ~e~Rk~IE~~MErFK~vEKe~--KtKafSkEGL~ 116 (873)
.+....++..=++-+.+||.. =+|.|+.+-..
T Consensus 128 ~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~ 161 (194)
T PF15619_consen 128 SQLEQKLQEKEKKIQELEKQLELENKSFRRQLAS 161 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777777777777777743 34566655443
No 67
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=82.09 E-value=56 Score=39.64 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhcc
Q 002856 45 EADLKKEIKKLQRYRDQIKTWIQS 68 (873)
Q Consensus 45 E~DLKKEIKKLQR~RDQIKtW~~s 68 (873)
-.+|+.||++|+...++++-|-.-
T Consensus 109 ~~~L~~~~~~l~~~~~~l~~~~~l 132 (646)
T PRK05771 109 ISELENEIKELEQEIERLEPWGNF 132 (646)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcC
Confidence 356788888889889999999653
No 68
>PTZ00464 SNF-7-like protein; Provisional
Probab=82.04 E-value=49 Score=35.36 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=21.4
Q ss_pred HHhHHHHHHhh--ccccccccccchhhHHHHHHHHHHHHHHHHH
Q 002856 56 QRYRDQIKTWI--QSSEIKDKKVSASYEQALVDARKLIEREMER 97 (873)
Q Consensus 56 QR~RDQIKtW~--~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MEr 97 (873)
+++|++||.-- +.+.+|.+. -.++-.||+.|.++++
T Consensus 42 ~~ak~~~k~~~~~~~~~~K~~A------l~~LK~KK~~E~ql~~ 79 (211)
T PTZ00464 42 MKLKEQIQRTRGMTQSRHKQRA------MQLLQQKRMYQNQQDM 79 (211)
T ss_pred HHHHHHHHHhcchhhhHHHHHH------HHHHHHHHHHHHHHHH
Confidence 35677776532 222234333 3577788888888887
No 69
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.03 E-value=42 Score=32.82 Aligned_cols=122 Identities=19% Similarity=0.327 Sum_probs=76.0
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC--chhHHHHHHHHHH---HHHHHHHhHHHHHHhhccccccccccch
Q 002856 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN--ANQKEKFEADLKK---EIKKLQRYRDQIKTWIQSSEIKDKKVSA 78 (873)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n--~nQKEKlE~DLKK---EIKKLQR~RDQIKtW~~s~eIKDK~~~~ 78 (873)
...|+.||.++...+.+-......+-+.+..-.. ..-.+|||.+|-+ .|+.|+++|++...-
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~------------- 71 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQEL------------- 71 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------------
Confidence 3467778888877777777776666666543322 1126789999876 689999999987542
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 79 SYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 79 ~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
...+.+.|..++.....+...|..-.. ....-.....=+..-|++|+.|+..|-..||.+
T Consensus 72 --~~~~~~l~~~~~~a~~~l~~~e~sw~~----------------qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 72 --QQEINELKAEAESAKAELEESEASWEE----------------QKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 225666667777766666544433110 111112233445566777777777777777665
No 70
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.87 E-value=13 Score=44.63 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHH
Q 002856 82 QALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDS 148 (873)
Q Consensus 82 ~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~ 148 (873)
..|-+-++.++...-.|++....||-|-=.=+|... ++--.-++|.+-++=|+..+++|+.|||.
T Consensus 262 eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~--~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 262 ESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLE--MLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666888888999999999888777777653 12223467777888888899998888653
No 71
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=81.42 E-value=23 Score=37.62 Aligned_cols=135 Identities=22% Similarity=0.197 Sum_probs=60.5
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHH---HHhhcCCCchhHHHHHHHHHHHHHHHHHhHHH-HHHhhccccccccccchhh
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIW---NKVYDTDNANQKEKFEADLKKEIKKLQRYRDQ-IKTWIQSSEIKDKKVSASY 80 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~---~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQ-IKtW~~s~eIKDK~~~~~~ 80 (873)
+||.+.+..+.+|-.+-.+..|++- .-+-+++|.+-+..|.+=- ..+.|+|-||+- +..-. +-.
T Consensus 21 ~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~la-e~~~~i~d~~q~qv~~l~-----------~~v 88 (211)
T cd07598 21 GELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFA-ECLAALQDYRQAEVERLE-----------AKV 88 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-----------HHH
Confidence 4556666666666555444444433 3333555555555554322 555555555531 11100 112
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHhhhcccccccc---ccCCCCCC--CchHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002856 81 EQALVDARKLIEREMERFK----ICEKETKTKAFSKE---GLGQQPKT--DPKEKAKSETRDWLNNLVSELESQIDSFEA 151 (873)
Q Consensus 81 ~~~L~e~Rk~IE~~MErFK----~vEKe~KtKafSkE---GL~~~~k~--Dp~ekek~E~~~wL~~~IdeL~~QiE~~Ea 151 (873)
..+|-+|-.+|=..|+.|| +.+++.|-. =..+ +.....+. ...|.+-..+..=...+...|+.+++.||.
T Consensus 89 ~epLk~Y~~l~k~~k~~~K~~~~ar~~~~~~~-~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~ 167 (211)
T cd07598 89 VQPLALYGTICKHARDDLKNTFTARNKELKQL-KQLEKLRQKNPSDRQIISQAESELQKASVDANRSTKELEEQMDNFEK 167 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356666666666666665 333333311 0000 00101111 112333344444555666666666666666
Q ss_pred H
Q 002856 152 E 152 (873)
Q Consensus 152 E 152 (873)
+
T Consensus 168 ~ 168 (211)
T cd07598 168 Q 168 (211)
T ss_pred H
Confidence 5
No 72
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=81.30 E-value=35 Score=33.07 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 002856 132 RDWLNNLVSELESQIDSFEAELE 154 (873)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaE~E 154 (873)
...|...++.|+..-+.+...++
T Consensus 74 ~~~i~~~~~~l~~~w~~l~~~~~ 96 (213)
T cd00176 74 AEEIQERLEELNQRWEELRELAE 96 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666555543
No 73
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=80.78 E-value=52 Score=35.52 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=14.3
Q ss_pred CCChhhhhhhhhHHHHHHH
Q 002856 196 ELSPEQVNDVKDLLEDYVE 214 (873)
Q Consensus 196 ~l~pe~V~~ikddieyYve 214 (873)
.|+-|+|.=+|+-|=-|..
T Consensus 204 ~lEeeRi~f~k~~lw~~~n 222 (240)
T cd07672 204 KQECERINFFRNAVWTHVN 222 (240)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567888888888877753
No 74
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=80.70 E-value=21 Score=48.50 Aligned_cols=64 Identities=30% Similarity=0.281 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-------------CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKK-------------GKTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (873)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK-------------~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (873)
.+.+.=++..+++|..|+...|.|+-.+..|- .|.-+.||.+|+..++.-+--..|+|.-.+-|
T Consensus 1054 ~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL 1130 (1930)
T KOG0161|consen 1054 QESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDL 1130 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333355666666666666666665553221 11113456666665555555555555555533
No 75
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=80.51 E-value=25 Score=33.02 Aligned_cols=36 Identities=11% Similarity=0.314 Sum_probs=20.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcccc
Q 002856 35 TDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSE 70 (873)
Q Consensus 35 a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~e 70 (873)
..+...+++++.+++..++++.+.-+.++....+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (181)
T PF12729_consen 71 ATDPEERQEIEKEIDEARAEIDEALEEYEKLILSPE 106 (181)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 345555666666666666666666666655544443
No 76
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=80.31 E-value=9.1 Score=37.28 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=28.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
|+...|+.++|..-++.|+.+++.++.+++.+
T Consensus 89 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~ 120 (140)
T PRK03947 89 EKDLDEAIEILDKRKEELEKALEKLEEALQKL 120 (140)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999998776
No 77
>PRK01156 chromosome segregation protein; Provisional
Probab=80.21 E-value=43 Score=41.81 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCCC
Q 002856 176 TRHKAHIMKLELILRLLDNDEL 197 (873)
Q Consensus 176 erhk~Hi~kLE~lLRlL~N~~l 197 (873)
++-+.-+..|+.+-+.|++..+
T Consensus 729 ~~~~~~~~~l~~~r~~l~k~~~ 750 (895)
T PRK01156 729 KKIKKAIGDLKRLREAFDKSGV 750 (895)
T ss_pred HHHHHHHHHHHHHHHHhhhccc
Confidence 3334445666666677776555
No 78
>PRK11637 AmiB activator; Provisional
Probab=80.06 E-value=28 Score=39.97 Aligned_cols=24 Identities=0% Similarity=-0.060 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 82 QALVDARKLIEREMERFKICEKET 105 (873)
Q Consensus 82 ~~L~e~Rk~IE~~MErFK~vEKe~ 105 (873)
..|.+.++.|+.+-+.|+..=+.+
T Consensus 110 ~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 110 ASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888877776654443
No 79
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=79.74 E-value=14 Score=44.34 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=51.3
Q ss_pred HHHHHHHHhhcCCCchh-HHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002856 24 VFDSIWNKVYDTDNANQ-KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICE 102 (873)
Q Consensus 24 ~Fd~i~~K~~~a~n~nQ-KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vE 102 (873)
.|++.|+.......-.| ..+++..|.+|++||++..+..+.=+...+-++.. --.+...|+.+..+||..|..+....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~~i~~~~~~~~~~~~~~~~-~r~~g~ll~an~~~i~~~~~~v~~~~ 344 (564)
T COG1293 266 LFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEE-LRQKGELLYANLQLIEEGLKSVRLAD 344 (564)
T ss_pred HHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhehhh
Confidence 59999999988877665 33477777777777766655555544444433310 12345678888888888777765544
Q ss_pred hhh
Q 002856 103 KET 105 (873)
Q Consensus 103 Ke~ 105 (873)
...
T Consensus 345 ~~~ 347 (564)
T COG1293 345 FYG 347 (564)
T ss_pred hcc
Confidence 443
No 80
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=79.47 E-value=77 Score=36.37 Aligned_cols=91 Identities=19% Similarity=0.321 Sum_probs=58.5
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCC----------------------CchhHHHHHHHHHHHHHHHHHhHHHH
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD----------------------NANQKEKFEADLKKEIKKLQRYRDQI 62 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~----------------------n~nQKEKlE~DLKKEIKKLQR~RDQI 62 (873)
+-...|+++.+++|.+-++.-......++.+- ..--++.-|.+|+||+.=|...++.+
T Consensus 56 ~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL 135 (384)
T PF03148_consen 56 RFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLL 135 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999998888888777776221 12236678889999987777666666
Q ss_pred HHhhccccccccccchhhHHHHHHHHHHHHHHHH-HHHHHHh
Q 002856 63 KTWIQSSEIKDKKVSASYEQALVDARKLIEREME-RFKICEK 103 (873)
Q Consensus 63 KtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~ME-rFK~vEK 103 (873)
+.=+..-.-.= ..|.++|..+|..+. +|.+++=
T Consensus 136 ~~~l~~~~eQl--------~~lr~ar~~Le~Dl~dK~~A~~I 169 (384)
T PF03148_consen 136 QRTLEQAEEQL--------RLLRAARYRLEKDLSDKFEALEI 169 (384)
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444322211 157777777777653 4444443
No 81
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=79.32 E-value=31 Score=44.91 Aligned_cols=27 Identities=7% Similarity=0.243 Sum_probs=17.3
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHh
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKV 32 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~ 32 (873)
.|+++++.+-++++...+.++++=+.+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l 630 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQL 630 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777766666554443
No 82
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.23 E-value=9.5 Score=38.36 Aligned_cols=106 Identities=20% Similarity=0.333 Sum_probs=63.4
Q ss_pred hhhcccccccccc--CCCCC---CCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCCchhhHHHHHHHH
Q 002856 103 KETKTKAFSKEGL--GQQPK---TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG-KTRPPRLTHLETSIT 176 (873)
Q Consensus 103 Ke~KtKafSkEGL--~~~~k---~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~-K~~~~r~~~le~~ie 176 (873)
..-..|.|.|.-+ ..+.. .++.+-... ..-|.+|+.|+..++.++-.|...-. =......++|...|+
T Consensus 46 g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~l------d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~ 119 (169)
T PF07106_consen 46 GKIVEKEYGKQKIYFANQDELEVPSPEELAEL------DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIE 119 (169)
T ss_pred CCeeeeeecceEEEeeCccccCCCCchhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3445667777655 22222 223222222 22355566665555555555532111 122344567788888
Q ss_pred HHHHHHHHHHHHHHhhhCCC--CChhhhhhhhhHHHHHHH
Q 002856 177 RHKAHIMKLELILRLLDNDE--LSPEQVNDVKDLLEDYVE 214 (873)
Q Consensus 177 rhk~Hi~kLE~lLRlL~N~~--l~pe~V~~ikddieyYve 214 (873)
..+--|..||.-|..|..+. ++++++..|......|..
T Consensus 120 ~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k 159 (169)
T PF07106_consen 120 ELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRK 159 (169)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 88888888888887777654 789999999998888865
No 83
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=79.22 E-value=37 Score=42.54 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHH-------HHHHHHHHHHHHhhhCCCCCh-hhhhhhhhH
Q 002856 166 PRLTHLETSITRH-------KAHIMKLELILRLLDNDELSP-EQVNDVKDL 208 (873)
Q Consensus 166 ~r~~~le~~ierh-------k~Hi~kLE~lLRlL~N~~l~p-e~V~~ikdd 208 (873)
.|+..|+.-+.+| +--|.+|-.+|+-++|...+- -+|.++...
T Consensus 548 ~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~Leke 598 (775)
T PF10174_consen 548 DRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKE 598 (775)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4666777666555 677899999999999998874 556666655
No 84
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=79.13 E-value=23 Score=32.63 Aligned_cols=103 Identities=14% Similarity=0.211 Sum_probs=64.0
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccc---cchhh
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNA--NQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK---VSASY 80 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~--nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~---~~~~~ 80 (873)
.+-.+|...+.+|+.-|..++..+.++..+... .-|++++.....=-+.-+..+..||.--..++...+. +...-
T Consensus 8 ~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~ 87 (117)
T smart00503 8 EKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTR 87 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHH
Confidence 345789999999999999999999999987763 3477777644333333344555555432222110000 00011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002856 81 EQALVDARKLIEREMERFKICEKETKTK 108 (873)
Q Consensus 81 ~~~L~e~Rk~IE~~MErFK~vEKe~KtK 108 (873)
.....-.++..-..|.+|..+++..+.+
T Consensus 88 ~~q~~~L~~~f~~~m~~fq~~Q~~~~~~ 115 (117)
T smart00503 88 KAQTEKLRKKFKEVMNEFQRLQRKYRER 115 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234445667788999999999987754
No 85
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=79.12 E-value=28 Score=45.25 Aligned_cols=91 Identities=26% Similarity=0.275 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHH
Q 002856 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEK 126 (873)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ek 126 (873)
.++++|+|+|-+|..--.-++.++-.. .+..|.-.++.++.+.|+- ..|-|-. ++..++.
T Consensus 641 ~~~~~l~k~~el~r~~~e~~~~~ek~~------~e~~~e~~lk~~q~~~eq~---~~E~~~~-----------~L~~~e~ 700 (1317)
T KOG0612|consen 641 AGKKELLKVEELKRENQERISDSEKEA------LEIKLERKLKMLQNELEQE---NAEHHRL-----------RLQDKEA 700 (1317)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH---HHHHHHH-----------HHhhHHH
Confidence 356677777766665555555544210 1113444445555554442 2222222 2333477
Q ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhh
Q 002856 127 AKSETRDWLNNLV---SELESQIDSFEAELEGLT 157 (873)
Q Consensus 127 ek~E~~~wL~~~I---deL~~QiE~~EaE~E~Ls 157 (873)
+..++..||.+-. ..+..-.-.+|+|+|.|+
T Consensus 701 ~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~ 734 (1317)
T KOG0612|consen 701 QMKEIESKLSEEKSAREKAENLLLEIEAELEYLS 734 (1317)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHh
Confidence 7788888886532 233333444666666664
No 86
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=79.10 E-value=74 Score=33.90 Aligned_cols=41 Identities=32% Similarity=0.447 Sum_probs=26.4
Q ss_pred cccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Q 002856 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ 56 (873)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQ 56 (873)
++|||+.|. +|+.--|+.|++.=.++ .+.+ .||++++|-||
T Consensus 16 ~n~~L~~en----~kL~~~ve~~ee~na~L--------~~e~-~~L~~q~~s~Q 56 (193)
T PF14662_consen 16 NNQKLADEN----AKLQRSVETAEEGNAQL--------AEEI-TDLRKQLKSLQ 56 (193)
T ss_pred HhHHHHHHH----HHHHHHHHHHHHHHHHH--------HHHH-HHHHHHHHHHH
Confidence 467888875 45666778888876555 2222 35677776666
No 87
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=78.92 E-value=39 Score=37.20 Aligned_cols=80 Identities=25% Similarity=0.408 Sum_probs=49.6
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHH---------HHHHHHHHhHHHHHHhhccccc-cccccchh
Q 002856 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLK---------KEIKKLQRYRDQIKTWIQSSEI-KDKKVSAS 79 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLK---------KEIKKLQR~RDQIKtW~~s~eI-KDK~~~~~ 79 (873)
||+. |+..-+-|+.|..--.++.......--+.+|.=|. -||..|.+..+|.+ |+..-.- -...
T Consensus 104 Ei~~-L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~~l~~~~-W~~~~~~~~~~~---- 177 (335)
T PF08429_consen 104 EIDQ-LKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRRRLEQLE-WLEEAREILSDP---- 177 (335)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHHHHHHHH-HHHHHHHHhccc----
Confidence 4444 66667778888888887776522222556666555 48888899888876 9876432 1111
Q ss_pred hHHHHHHHHHHHHHHH
Q 002856 80 YEQALVDARKLIEREM 95 (873)
Q Consensus 80 ~~~~L~e~Rk~IE~~M 95 (873)
..-.|.+.|++|++..
T Consensus 178 ~~~tL~~l~~Ll~~g~ 193 (335)
T PF08429_consen 178 DRLTLDELRELLDEGE 193 (335)
T ss_pred cCCcHHHHHHHHHhhh
Confidence 0015777777776543
No 88
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=78.88 E-value=79 Score=34.73 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=50.7
Q ss_pred hhhHHHHhhhHHHhHHHHHHHHHHhh--------------------------cCC-------------------CchhHH
Q 002856 8 QGEIDRVLKKVQEGVDVFDSIWNKVY--------------------------DTD-------------------NANQKE 42 (873)
Q Consensus 8 Q~EIDr~lKKV~EGve~Fd~i~~K~~--------------------------~a~-------------------n~nQKE 42 (873)
---+|.++|.|+.||+.+++|..=+. ..+ -+.|+|
T Consensus 4 ~Dqf~~~~k~~~~Gi~~l~~~~~F~keRa~IE~eYakkL~~L~Kky~~KK~~~~e~p~~t~~~s~~~~L~~~~~~a~q~e 83 (252)
T cd07675 4 WDQFDNLDKHTQWGIDFLERYAKFVKERLEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTSCLSFYNILNELNDYAGQRE 83 (252)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 34468888999999988887754222 001 156788
Q ss_pred HHHHHHHHHH-----HHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002856 43 KFEADLKKEI-----KKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFK 99 (873)
Q Consensus 43 KlE~DLKKEI-----KKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK 99 (873)
.+..+|..+| +..+++|.++|.++... .+|+..+.....+||+-|
T Consensus 84 ~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~------------~klqk~l~~~~~~leksK 133 (252)
T cd07675 84 VVAEEMGHRVYGELMRYSHDLKGERKMHLQEG------------RKAQQYLDMCWKQMDNSK 133 (252)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 8888885543 45588888888887221 155555555555665543
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=78.43 E-value=29 Score=40.19 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.2
Q ss_pred HHHHHHhHHHHHHhhccccccc
Q 002856 52 IKKLQRYRDQIKTWIQSSEIKD 73 (873)
Q Consensus 52 IKKLQR~RDQIKtW~~s~eIKD 73 (873)
|..-+++|.|||+|..+.|.-+
T Consensus 152 ~~e~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 152 IQEHWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred HHHHHHHHHHHHHHhcCCchhh
Confidence 6678999999999999988764
No 90
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=78.36 E-value=31 Score=37.60 Aligned_cols=49 Identities=14% Similarity=0.346 Sum_probs=23.9
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHH
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQI 62 (873)
+|++.|++++.|++.+--..|+++ .+|.-.+|.||.+.=+|+-|.|+++
T Consensus 34 ~k~~~e~e~~~~~~~~~~~e~e~l---------e~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 34 KKAKAELEALNKALEALEIELEDL---------ENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444444444443 2334455555555555555555555
No 91
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.34 E-value=51 Score=43.66 Aligned_cols=103 Identities=17% Similarity=0.259 Sum_probs=66.7
Q ss_pred HhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHH
Q 002856 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIER 93 (873)
Q Consensus 14 ~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~ 93 (873)
.+..+.|+++.+|.+-+++ .+|+++|+.|.+++.....|...-.-... ..+...+..++.
T Consensus 221 ~i~~l~e~~~~~~~~~~~l-------------e~l~~~~~~l~~i~~~y~~y~~~~~~~~~-------~~~~~~~~~~~~ 280 (1353)
T TIGR02680 221 ELTDVADALEQLDEYRDEL-------------ERLEALERALRNFLQRYRRYARTMLRRRA-------TRLRSAQTQYDQ 280 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3778888888888876666 47899999999999888888764322222 256666677777
Q ss_pred HHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 94 EMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 94 ~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
.++.-..++.+... ..+...=+..-+++|+.+++.++.+++.|
T Consensus 281 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 281 LSRDLGRARDELET--------------------AREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77766555554321 11122233445666677777777777666
No 92
>PRK09039 hypothetical protein; Validated
Probab=78.33 E-value=62 Score=36.65 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHH
Q 002856 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSIT 176 (873)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ie 176 (873)
-....|+.-|+.|+.|+..+|++|+.+.. +.+....++++|+..|+
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~-~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEK-RDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34667888888888888888888877632 12222334444444333
No 93
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=77.43 E-value=23 Score=43.60 Aligned_cols=105 Identities=24% Similarity=0.363 Sum_probs=52.3
Q ss_pred cCCCchhHHHHHH---HHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 002856 34 DTDNANQKEKFEA---DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAF 110 (873)
Q Consensus 34 ~a~n~nQKEKlE~---DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKaf 110 (873)
++.+.+-|+-|-. .|.|-.--|.|-||-+|-=+.+ ||+---.+...+-|.|.--.|-.-|+. =|| .
T Consensus 397 ~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~ks--lk~ela~~l~~DeLaEkdE~I~~lm~E---GEk------L 465 (961)
T KOG4673|consen 397 ESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKS--LKKELAAALLKDELAEKDEIINQLMAE---GEK------L 465 (961)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHH---HHH------h
Confidence 4445555655543 3444444455666665554432 333222223333566666777777765 333 3
Q ss_pred cccccCCCC---CCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 111 SKEGLGQQP---KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 111 SkEGL~~~~---k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
||+-|.... |+-.++|+-. +++..+..+|-.|+.|.+.|
T Consensus 466 SK~ql~qs~iIkKLRAk~ke~e-------tl~~K~ge~i~~L~sE~~~l 507 (961)
T KOG4673|consen 466 SKKQLAQSAIIKKLRAKIKEAE-------TLEEKKGELITKLQSEENKL 507 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-------HHHHHhhhHHHHHHHHHHHH
Confidence 444443321 2222222211 35566677777777777777
No 94
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=77.35 E-value=11 Score=39.39 Aligned_cols=80 Identities=29% Similarity=0.395 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC--CCchhhHHHHHHHHHHHHHHHHHHHHH-Hhhh---CCCCChhh---
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGK--TRPPRLTHLETSITRHKAHIMKLELIL-RLLD---NDELSPEQ--- 201 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K--~~~~r~~~le~~ierhk~Hi~kLE~lL-RlL~---N~~l~pe~--- 201 (873)
..+.....++.++.+++.+|.++ .+.. ..-.++-.++..+-+.+..+..+..++ +++. ...++.+.
T Consensus 119 ~~~~~~~~l~~l~~~l~~le~~~-----~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 193 (292)
T PF01544_consen 119 IVDDYFEVLEELEDELDELEDEL-----DDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEY 193 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----THTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-----ccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 33334445555555555555554 1221 224578888888888888888887777 8887 44455554
Q ss_pred hhhhhhHHHHHHHh
Q 002856 202 VNDVKDLLEDYVER 215 (873)
Q Consensus 202 V~~ikddieyYve~ 215 (873)
+.++.++++...+.
T Consensus 194 ~~~~~~~~~~~~~~ 207 (292)
T PF01544_consen 194 LRDLLDRIERLLER 207 (292)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777776653
No 95
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.07 E-value=93 Score=34.99 Aligned_cols=183 Identities=20% Similarity=0.253 Sum_probs=97.9
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHhHHHHHHhhcccccccc-----ccchhhHH
Q 002856 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK-----KVSASYEQ 82 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQ--KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK-----~~~~~~~~ 82 (873)
||...++++.+-++.-+..+.++..+.++-+ |.+||++...=+++--..|-.||.--..++--.+ ........
T Consensus 44 ~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~rrt 123 (297)
T KOG0810|consen 44 EIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAGLRTRRT 123 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchhHHH
Confidence 5666666666666666666666667777666 8899887766555555566666665544432221 11222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHH-H--HHHHHHHHhhhhc-
Q 002856 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELES-Q--IDSFEAELEGLTV- 158 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~-Q--iE~~EaE~E~Ls~- 158 (873)
...-..|..+..|..|-.+....|. ++.+.+......-+. + -|.+|.-+|.-..
T Consensus 124 q~~~~~kkf~~~M~~f~~~~~~~r~----------------------~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~ 181 (297)
T KOG0810|consen 124 QTSALSKKLKELMNEFNRTQSKYRE----------------------EYKERIQRQLFIVGGEETTDEEIEEMIESGGSE 181 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHhhhCCCcCChHHHHHHHHCCChH
Confidence 4555558888888888766544432 222222222222111 0 0122222222100
Q ss_pred ---cc-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC----hhhhhhhhhHHHHHHHh
Q 002856 159 ---KK-GKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS----PEQVNDVKDLLEDYVER 215 (873)
Q Consensus 159 ---KK-~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~----pe~V~~ikddieyYve~ 215 (873)
.| ........+-|.+.-+||.. |.+||.-||-|.-=-+| ++.=.+.-|+||+-|++
T Consensus 182 ~f~~~~i~~~~~~~~~l~Eiq~Rh~~-ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~ 245 (297)
T KOG0810|consen 182 VFTQKAIQDRGQAKQTLAEIQERHDE-IKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVEN 245 (297)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 00 00122334567777778864 88999988877665555 22223456677776663
No 96
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.97 E-value=39 Score=44.33 Aligned_cols=17 Identities=6% Similarity=0.081 Sum_probs=7.0
Q ss_pred HHHhhhHHHhHHHHHHH
Q 002856 12 DRVLKKVQEGVDVFDSI 28 (873)
Q Consensus 12 Dr~lKKV~EGve~Fd~i 28 (873)
+..|.++.+-++..+.+
T Consensus 771 ~~~l~~~~~~~~~~esL 787 (1311)
T TIGR00606 771 ETLLGTIMPEEESAKVC 787 (1311)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 33344444444444433
No 97
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.66 E-value=33 Score=35.79 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHH----HHHHHHHHHHHHhhhC-CCCChhhhh
Q 002856 135 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH----KAHIMKLELILRLLDN-DELSPEQVN 203 (873)
Q Consensus 135 L~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierh----k~Hi~kLE~lLRlL~N-~~l~pe~V~ 203 (873)
+-.-+.+|..+++.+++|++.+ ++..++++++++..+.+- +..-.+++.|..-+.+ -.++.++|+
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~~----~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~~~~~~~i~ 177 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEKY----SENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKKFGMDEEDIR 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCHHHHH
Confidence 4457788899999999998854 334556666666544332 2333444444444444 235555555
No 98
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=76.53 E-value=1.1e+02 Score=32.70 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhCCCCC-hhhhhhhhhH
Q 002856 181 HIMKLELILRLLDNDELS-PEQVNDVKDL 208 (873)
Q Consensus 181 Hi~kLE~lLRlL~N~~l~-pe~V~~ikdd 208 (873)
...+|+.|-.+|++..|+ .|++..|-|-
T Consensus 129 R~~Rl~~L~~~l~~~dv~~~ek~r~vlea 157 (251)
T PF11932_consen 129 RQERLARLRAMLDDADVSLAEKFRRVLEA 157 (251)
T ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 356778888899999987 4555555433
No 99
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=76.53 E-value=23 Score=33.37 Aligned_cols=32 Identities=38% Similarity=0.563 Sum_probs=27.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
+....++.+||.+-|+.|+.+++.++.+++.+
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~ 113 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKL 113 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999887766
No 100
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=76.28 E-value=13 Score=39.40 Aligned_cols=44 Identities=23% Similarity=0.374 Sum_probs=31.6
Q ss_pred HHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHH---HHHHHHHHHHHHhHH
Q 002856 13 RVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFE---ADLKKEIKKLQRYRD 60 (873)
Q Consensus 13 r~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE---~DLKKEIKKLQR~RD 60 (873)
|.|..++++|..-++.++... ++=|+||. .+|.+|+|+-+++-|
T Consensus 19 r~L~~L~~dl~~~~~~~~~~e----~~~~~KY~~lR~ElI~ELkqsKklyd 65 (196)
T PF15272_consen 19 RALSDLNQDLRERDERYELQE----TSYKEKYQQLRQELINELKQSKKLYD 65 (196)
T ss_pred HHHHHHHHHHHHhhhHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888777776664 44577776 488888888776655
No 101
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=76.23 E-value=10 Score=46.58 Aligned_cols=54 Identities=19% Similarity=0.333 Sum_probs=0.0
Q ss_pred HhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHh-HHHHHHhhccc
Q 002856 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRY-RDQIKTWIQSS 69 (873)
Q Consensus 14 ~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~-RDQIKtW~~s~ 69 (873)
.++++.+-+..+++.++++... -++.+.....|++++.+|+.. +++++.|..-+
T Consensus 75 ~l~~le~~l~e~~~~~e~L~~~--~~~L~E~~~~L~~~~~~l~~~~~~~l~~~~~l~ 129 (759)
T PF01496_consen 75 ELEELEEELRELNENLEKLEEE--LNELEEEKNVLEEEIEFLEELKLEELEPWKNLD 129 (759)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 3344444444555555555432 233344555688888888888 78888888654
No 102
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.22 E-value=82 Score=41.23 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=8.4
Q ss_pred HhHHHHHHHHHHHHHHH
Q 002856 126 KAKSETRDWLNNLVSEL 142 (873)
Q Consensus 126 kek~E~~~wL~~~IdeL 142 (873)
+-+.|+.+-|..+-+.|
T Consensus 1693 ~L~~eA~~Ll~~a~~kl 1709 (1758)
T KOG0994|consen 1693 QLRTEAEKLLGQANEKL 1709 (1758)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554444
No 103
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=76.19 E-value=52 Score=41.20 Aligned_cols=16 Identities=25% Similarity=0.634 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhHHH
Q 002856 46 ADLKKEIKKLQRYRDQ 61 (873)
Q Consensus 46 ~DLKKEIKKLQR~RDQ 61 (873)
..|+++.++++|+++.
T Consensus 196 ~~L~~q~~~a~~~~~~ 211 (1179)
T TIGR02168 196 NELERQLKSLERQAEK 211 (1179)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566667777666554
No 104
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=75.77 E-value=1.8e+02 Score=34.96 Aligned_cols=59 Identities=19% Similarity=0.442 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHH-HHHHHhhhcccccccccc
Q 002856 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMER-FKICEKETKTKAFSKEGL 115 (873)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MEr-FK~vEKe~KtKafSkEGL 115 (873)
++-++|+.|+...++...-+.+-++++-. ..+.+ |+.+++. |-.+|||.+.|.|...-+
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~~~------~~~~~----i~~~Id~Lyd~lekE~~A~~~vek~~ 312 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDEAE------EKNEE----IQERIDQLYDILEREVKARKYVEKNS 312 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHHHH------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555655555555555555555555322 12322 3333332 334677777777664444
No 105
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=75.63 E-value=1.1e+02 Score=38.56 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 167 RLTHLETSITRHKAHIMKLELILRLL 192 (873)
Q Consensus 167 r~~~le~~ierhk~Hi~kLE~lLRlL 192 (873)
++.+++..++..+-.+..|+.-++-+
T Consensus 434 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 459 (1179)
T TIGR02168 434 ELKELQAELEELEEELEELQEELERL 459 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444455554444433
No 106
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=74.92 E-value=32 Score=33.66 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=41.9
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhc---CCCchhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYD---TDNANQKEKFEADLKKEIKKLQRYRDQIKTW 65 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~---a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW 65 (873)
.+|+.+.++.-++++.=-..|+..++++.. .-+..++++++.+|.+....||+++.++..=
T Consensus 39 ~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 102 (158)
T PF03938_consen 39 AKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQ 102 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555666666666665 4467789999999999999999988887743
No 107
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=74.52 E-value=1.2e+02 Score=36.90 Aligned_cols=9 Identities=33% Similarity=0.464 Sum_probs=5.7
Q ss_pred HHHHHHHHH
Q 002856 179 KAHIMKLEL 187 (873)
Q Consensus 179 k~Hi~kLE~ 187 (873)
..|..+||.
T Consensus 326 eLh~aRLe~ 334 (546)
T PF07888_consen 326 ELHQARLEA 334 (546)
T ss_pred HHHHhhhhH
Confidence 467777753
No 108
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=74.50 E-value=1.3e+02 Score=36.24 Aligned_cols=84 Identities=20% Similarity=0.376 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH-HHHHhhhccccccccccCCCCCCCchH
Q 002856 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF-KICEKETKTKAFSKEGLGQQPKTDPKE 125 (873)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErF-K~vEKe~KtKafSkEGL~~~~k~Dp~e 125 (873)
++.++|+.++..+++.+.-+..-++++=. ..+. .|+.+++.+ -.+|||.+.|.|=.+.+
T Consensus 249 ~i~~~i~~i~~~l~~~~~~L~~l~l~~~~------~~~~----~i~~~Id~lYd~le~E~~Ak~~V~~~~---------- 308 (560)
T PF06160_consen 249 DIEEEIEQIEEQLEEALALLKNLELDEVE------EENE----EIEERIDQLYDILEKEVEAKKYVEKNL---------- 308 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHH------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhH----------
Confidence 57778888888888877777777776422 1333 333444432 34678777766544333
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002856 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls 157 (873)
.-|.+.|+.++.+...+..|++.++
T Consensus 309 -------~~l~~~l~~~~~~~~~l~~e~~~v~ 333 (560)
T PF06160_consen 309 -------KELYEYLEHAKEQNKELKEELERVS 333 (560)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344566666666666666666663
No 109
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=74.50 E-value=26 Score=42.82 Aligned_cols=66 Identities=21% Similarity=0.368 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-------hhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhh
Q 002856 135 LNNLVSELESQIDSFEAELEG-------LTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQ 201 (873)
Q Consensus 135 L~~~IdeL~~QiE~~EaE~E~-------Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~ 201 (873)
|+.-+..|++.+|.++.+++. |+. ..+....||.+|+..+++.+--..-...||--|.||++....
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~-L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SR 157 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSR-LNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASR 157 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 444455555555555554433 321 122335789999998888877777777788888899887443
No 110
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=74.48 E-value=65 Score=34.71 Aligned_cols=184 Identities=16% Similarity=0.209 Sum_probs=82.5
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH-hHHHHHHhhccccccccccchhhHHHH
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR-YRDQIKTWIQSSEIKDKKVSASYEQAL 84 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR-~RDQIKtW~~s~eIKDK~~~~~~~~~L 84 (873)
+|.+|+|.+.+|+.--..--+.+......+-+.. .+|...|++|++ ..+-|+.|..-+.--+......+...|
T Consensus 56 ~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a------~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l 129 (264)
T PF06008_consen 56 SLEQDVENLQEKATKVSRKAQQLNNNTERTLQRA------QDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRAL 129 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHH
Confidence 4555666666666655555555444443332111 245555555543 334445554443311111222334445
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 002856 85 VDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR 164 (873)
Q Consensus 85 ~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~ 164 (873)
.|++++++ +|+.+.|+..=-. .+.|+.+|..-|..+-..+....+..+.=.+.+..+ -..-
T Consensus 130 ~ea~~mL~-----------emr~r~f~~~~~~-------Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~-L~~~ 190 (264)
T PF06008_consen 130 AEAQRMLE-----------EMRKRDFTPQRQN-------AEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDD-LNDY 190 (264)
T ss_pred HHHHHHHH-----------HHHhccchhHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHH-HHHH
Confidence 55544432 3444555544332 356666666665555555544443333332322100 0111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC----ChhhhhhhhhHHHHHHH
Q 002856 165 PPRLTHLETSITRHKAHIMKLELILRLLDNDEL----SPEQVNDVKDLLEDYVE 214 (873)
Q Consensus 165 ~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l----~pe~V~~ikddieyYve 214 (873)
..++.+|+.++++=.-++..=+.+.+...+.-- -.+.|.+.+..+..+|.
T Consensus 191 ~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~ 244 (264)
T PF06008_consen 191 NAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLK 244 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234555666655544444444444443333211 13445555555555555
No 111
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=72.57 E-value=78 Score=38.49 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=24.8
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 002856 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADL 48 (873)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DL 48 (873)
.+.++.++++++.+=-+..+.|-+|+..+....+-++|+..|
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l 430 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEEL 430 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 455666666666666666666666666665544444444433
No 112
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=72.52 E-value=48 Score=33.79 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=34.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhhcccc-ccccc
Q 002856 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSE-IKDKK 75 (873)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~e-IKDK~ 75 (873)
.+|.+++..-++..+..|+-++..|...+..++ .|+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka 47 (204)
T PF04740_consen 9 HSQAESTNSSLKELKEQLESLQKAINQFISSESSLKGKA 47 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHH
Confidence 457788889999999999999999999999999 99988
No 113
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=72.16 E-value=20 Score=44.25 Aligned_cols=49 Identities=24% Similarity=0.441 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhHHHHHHhhccc---cccccccchhhHHHHHH---HHHHHHHHH
Q 002856 47 DLKKEIKKLQRYRDQIKTWIQSS---EIKDKKVSASYEQALVD---ARKLIEREM 95 (873)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~---eIKDK~~~~~~~~~L~e---~Rk~IE~~M 95 (873)
-||-||--||+--||+.+=+++= ==+||...+.+|.+|.| .|..+|.+.
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL 511 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQL 511 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554433321 11255544555555544 334444443
No 114
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=71.40 E-value=13 Score=46.08 Aligned_cols=139 Identities=20% Similarity=0.308 Sum_probs=91.4
Q ss_pred HHHHHHHhHHHHHHhhccc-ccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccCCCCCCCchHHh
Q 002856 51 EIKKLQRYRDQIKTWIQSS-EIK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTK-AFSKEGLGQQPKTDPKEKA 127 (873)
Q Consensus 51 EIKKLQR~RDQIKtW~~s~-eIK-DK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtK-afSkEGL~~~~k~Dp~eke 127 (873)
...|+||+-.-+..++..- -+. |-.- .-.-..+...|--||+.+-.|-.-|..-... .++||||.+-.|+-|.---
T Consensus 807 DvQK~QRlh~~FsqFvg~HLavAF~~dP-E~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~l 885 (1480)
T COG3096 807 DVQKTQRLHQAFSRFIGSHLAVAFEADP-EAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNL 885 (1480)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3578999999988887653 111 1000 0011256778889999999998888776653 4678887765555552110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhh
Q 002856 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKD 207 (873)
Q Consensus 128 k~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikd 207 (873)
=+.+-|.+-|++++.+++..+ +.+.+|..|--.+.+||-|.-.|+. ||++.+.+|+
T Consensus 886 --l~dE~L~dRveE~~E~L~~a~-------------------e~~~fI~qhG~tls~LEpia~~Lqs---DPe~~e~L~~ 941 (1480)
T COG3096 886 --LADESLADRVEEIRERLDEAQ-------------------EAARFIQQHGNTLSKLEPIASVLQS---DPEQFEQLKE 941 (1480)
T ss_pred --ccchhHHHHHHHHHHHHHHHH-------------------HHHHHHHHhcchHHhhhhHHHHHhC---CHHHHHHHHH
Confidence 011224444555555554433 4578999999999999999999987 6999999998
Q ss_pred HHHHHHH
Q 002856 208 LLEDYVE 214 (873)
Q Consensus 208 dieyYve 214 (873)
+..--..
T Consensus 942 ~y~qA~~ 948 (1480)
T COG3096 942 DYAQAQQ 948 (1480)
T ss_pred HHHHHHH
Confidence 8655443
No 115
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=71.37 E-value=1.3e+02 Score=32.65 Aligned_cols=44 Identities=25% Similarity=0.316 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHH-----HHHHHHHHHHHHHHh
Q 002856 134 WLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSIT-----RHKAHIMKLELILRL 191 (873)
Q Consensus 134 wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ie-----rhk~Hi~kLE~lLRl 191 (873)
=...+.-.|+.+|+.||.. |+.+|+..+. -..||-.-||.+=..
T Consensus 157 ~~~rt~~~Lee~i~~FEkq--------------Kl~DlK~i~sdFv~iEM~fHaKALEv~T~a 205 (219)
T PF06730_consen 157 DATRTTKQLEETIDNFEKQ--------------KLKDLKKIFSDFVTIEMVFHAKALEVYTAA 205 (219)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999987 4566666552 468999999988654
No 116
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.30 E-value=1.1e+02 Score=33.65 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=11.7
Q ss_pred hHHHHhhhHHHhHHHHHH
Q 002856 10 EIDRVLKKVQEGVDVFDS 27 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~ 27 (873)
..=.+.|||.+....||.
T Consensus 85 ~~gea~~kla~a~~~~d~ 102 (248)
T cd07619 85 LCGETEDKLAQELILFEL 102 (248)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566777777777765
No 117
>PF13514 AAA_27: AAA domain
Probab=70.69 E-value=1.2e+02 Score=39.29 Aligned_cols=59 Identities=14% Similarity=0.375 Sum_probs=36.2
Q ss_pred cchhhhHHHHhh------hHHHhHHHHHHHHHHhhcCCCch-hHHHHHHHHHHHHHHHHHhHHHHH
Q 002856 5 RKLQGEIDRVLK------KVQEGVDVFDSIWNKVYDTDNAN-QKEKFEADLKKEIKKLQRYRDQIK 63 (873)
Q Consensus 5 RKLQ~EIDr~lK------KV~EGve~Fd~i~~K~~~a~n~n-QKEKlE~DLKKEIKKLQR~RDQIK 63 (873)
.+|.+|.|++|| .|+..+..|+++-.++....... +=..+...+..--..++++|.+++
T Consensus 133 ~~L~~ea~~Lfkprg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~ 198 (1111)
T PF13514_consen 133 KQLDKEADELFKPRGRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELK 198 (1111)
T ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888887 58888888888888887666533 233333333333333344444433
No 118
>KOG2117 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.56 E-value=14 Score=42.43 Aligned_cols=91 Identities=24% Similarity=0.438 Sum_probs=58.7
Q ss_pred CccccchhhhHHHHhhhHHH---hHHHHHHHHHHhhcCCCch-----------------------hHHHHHHHHHHHHHH
Q 002856 1 MGASRKLQGEIDRVLKKVQE---GVDVFDSIWNKVYDTDNAN-----------------------QKEKFEADLKKEIKK 54 (873)
Q Consensus 1 Maa~RKLQ~EIDr~lKKV~E---Gve~Fd~i~~K~~~a~n~n-----------------------QKEKlE~DLKKEIKK 54 (873)
||+.-+.|..+++--+|--+ .|=.||++|+-|+...+.+ -|-|+|-.|.-| +|
T Consensus 44 ~ask~~~~k~ae~qhqKAlaEDptif~YDe~YDdmq~kk~e~~~~~~~~~~r~kPkYi~nLie~aerRkkE~e~r~E-Rk 122 (379)
T KOG2117|consen 44 QASKTKSQKTAERQHQKALAEDPTIFGYDEVYDDMQSKKREQLPRLRLREKRRKPKYIENLIEAAERRKKEQELRYE-RK 122 (379)
T ss_pred cchHHHHHHHHHHHHHHhhhcCCchhccchhhHHHHHHHhhhhHhhhhhccccccHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45555666666666655433 4667899999997544322 133334333333 56
Q ss_pred HHHhHHHHHHhhccccccccc--cchhhHHHHHHHHHHHHHHHHH
Q 002856 55 LQRYRDQIKTWIQSSEIKDKK--VSASYEQALVDARKLIEREMER 97 (873)
Q Consensus 55 LQR~RDQIKtW~~s~eIKDK~--~~~~~~~~L~e~Rk~IE~~MEr 97 (873)
|||-|+- -..+..||. |-.+|-.+|.|-++-+|++=++
T Consensus 123 l~KeREk-----Eg~~fdDkekfVTgAYKKklEE~~k~~e~Ek~~ 162 (379)
T KOG2117|consen 123 LLKEREK-----EGDEFDDKEKFVTGAYKKKLEEVKKWLEQEKEE 162 (379)
T ss_pred HHHHHHh-----hccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7777764 445455555 8889999999999999987655
No 119
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=70.53 E-value=15 Score=35.10 Aligned_cols=32 Identities=31% Similarity=0.521 Sum_probs=29.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
|+...|+.++|.+-|+.|+++++.++.++..+
T Consensus 81 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l 112 (126)
T TIGR00293 81 EKDAEEAIEFLKKRIEELEKAIEKLQEALAEL 112 (126)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999998776
No 120
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=70.51 E-value=1.4e+02 Score=38.70 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhHHHHHHhhcccccc----cc----ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002856 46 ADLKKEIKKLQRYRDQIKTWIQSSEIK----DK----KVSASYEQALVDARKLIEREMERFKICEKETK 106 (873)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s~eIK----DK----~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~K 106 (873)
.|||-++-=.+|-+++.++-+..++-. |- ...--.++.+.+-++++-..|+..+.+|+-||
T Consensus 711 ~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~ 779 (1174)
T KOG0933|consen 711 RDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMK 779 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366667766677777776666655321 00 00001223445555555566666666666655
No 121
>PRK09039 hypothetical protein; Validated
Probab=70.44 E-value=55 Score=37.05 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHH
Q 002856 167 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 209 (873)
Q Consensus 167 r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddi 209 (873)
.|+.++....-.+-.|..|+.-|+.+-.. ...++..++.++
T Consensus 159 ~L~~ae~~~~~~~~~i~~L~~~L~~a~~~--~~~~l~~~~~~~ 199 (343)
T PRK09039 159 ALDASEKRDRESQAKIADLGRRLNVALAQ--RVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHH
Confidence 34444444444444444444444433222 134555566666
No 122
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=69.58 E-value=41 Score=40.78 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhHHHHHHhhcccccccc
Q 002856 46 ADLKKEIKKLQRYRDQIKTWIQSSEIKDK 74 (873)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s~eIKDK 74 (873)
..++.+|-.|+++|+-.|.|-++.++++-
T Consensus 355 d~~~~~~~~~~~~~~sl~~~~~~E~~~~d 383 (607)
T KOG0240|consen 355 DKNVALKEELEKLRNSLKRWRNGEEVKED 383 (607)
T ss_pred hHHHHHHHHHHHHHHHHhhhcccCcccch
Confidence 34677888999999999999999998853
No 123
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=69.54 E-value=78 Score=31.67 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhccc
Q 002856 138 LVSELESQIDSFEAELEGLTVKK 160 (873)
Q Consensus 138 ~IdeL~~QiE~~EaE~E~Ls~KK 160 (873)
=|++|+..|+.|+++++.|..||
T Consensus 110 dv~~L~~rId~L~~~v~~l~~~k 132 (132)
T PF05597_consen 110 DVEALSARIDQLTAQVERLANKK 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 47888888888888888886554
No 124
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=69.26 E-value=1.3e+02 Score=35.50 Aligned_cols=17 Identities=24% Similarity=0.122 Sum_probs=12.4
Q ss_pred ccchhhhHHHHhhhHHH
Q 002856 4 SRKLQGEIDRVLKKVQE 20 (873)
Q Consensus 4 ~RKLQ~EIDr~lKKV~E 20 (873)
++|.-+|+-|+|++-.-
T Consensus 72 kcki~qeenr~l~~Asv 88 (552)
T KOG2129|consen 72 KCKIMQEENRPLLLASV 88 (552)
T ss_pred HHHHHHhcCchhhhhhh
Confidence 46777888888887543
No 125
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=69.22 E-value=17 Score=44.01 Aligned_cols=127 Identities=20% Similarity=0.323 Sum_probs=42.2
Q ss_pred ccchhhhHHHHhhhHHHhH--------HHHHHHHHHhhcCCCchhH----------HHHHHHHHHHHHHHHHhHHHHHHh
Q 002856 4 SRKLQGEIDRVLKKVQEGV--------DVFDSIWNKVYDTDNANQK----------EKFEADLKKEIKKLQRYRDQIKTW 65 (873)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGv--------e~Fd~i~~K~~~a~n~nQK----------EKlE~DLKKEIKKLQR~RDQIKtW 65 (873)
...|+.|++||-..-.+-+ ..-+++|++++-+....+. |-+=..+..||++|..+.++-|.-
T Consensus 266 i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk~~~~~~k~I 345 (619)
T PF03999_consen 266 IEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLKEEYESRKPI 345 (619)
T ss_dssp ---------------------------------------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888865444444 4457889998854332221 222344677888888776665532
Q ss_pred hccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHH
Q 002856 66 IQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTK-AFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELES 144 (873)
Q Consensus 66 ~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtK-afSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~ 144 (873)
+ .|++.|+ .-.+.+..+|..+|=. -|.+-|- .+=-+||.+..+..=|=.++++|..
T Consensus 346 l----------------~~v~k~~---~l~~~~~~Le~~~~D~~Rl~~RGg----~LLkEEk~rk~i~k~lPkle~~L~~ 402 (619)
T PF03999_consen 346 L----------------ELVEKWE---SLWEEMEELEESSKDPSRLNNRGG----HLLKEEKERKRIQKKLPKLEEELKK 402 (619)
T ss_dssp H----------------HHHHHHH---HHHHHHHHHHHHHH-CCGG----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----------------HHHHHHH---HHHHHHHHHHHHhcChhhhccccc----HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 2 2233333 3334444455544322 2444341 1222466777777889999999999
Q ss_pred HHHHHHHHH
Q 002856 145 QIDSFEAEL 153 (873)
Q Consensus 145 QiE~~EaE~ 153 (873)
.|+.+|.|-
T Consensus 403 ~l~~wE~e~ 411 (619)
T PF03999_consen 403 KLEEWEEEH 411 (619)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999999883
No 126
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.14 E-value=2.7e+02 Score=34.19 Aligned_cols=41 Identities=12% Similarity=0.290 Sum_probs=27.6
Q ss_pred HHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHH
Q 002856 13 RVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQ 61 (873)
Q Consensus 13 r~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQ 61 (873)
.+|.-....+++|.+-|-+. .+|.-.++.+-|+-|||..||
T Consensus 559 E~~~lL~~a~~vfrEqYi~~--------~dlV~~e~qrH~~~l~~~k~~ 599 (741)
T KOG4460|consen 559 ECLQLLSRATQVFREQYILK--------QDLVKEEIQRHVKLLCDQKKK 599 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 35555667788888888776 345666677777777765544
No 127
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=69.05 E-value=1.4e+02 Score=37.79 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 002856 139 VSELESQIDSFEAELEGLTV 158 (873)
Q Consensus 139 IdeL~~QiE~~EaE~E~Ls~ 158 (873)
+..+..+++.+..+++.+..
T Consensus 690 ~~~~~~el~~~~~~l~~~~~ 709 (908)
T COG0419 690 LEQLEEELEQLREELEELLK 709 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555533
No 128
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=69.01 E-value=2.1e+02 Score=34.82 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCC-hhhhhhhhhHH
Q 002856 173 TSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLL 209 (873)
Q Consensus 173 ~~ierhk~Hi~kLE~lLRlL~N~~l~-pe~V~~ikddi 209 (873)
+..+-|+--.+++...++.+.+++.+ ..++.+-|+++
T Consensus 443 el~~l~~~~~~n~~~a~~~l~~~D~~~ar~lv~~k~~~ 480 (533)
T COG1283 443 ELDALFALTLENLRLAISVLVTGDLELARRLVERKKRV 480 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33344555556666666666666655 33333334433
No 129
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=68.71 E-value=3.2e+02 Score=34.57 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=5.6
Q ss_pred HHHHhHHHHH
Q 002856 54 KLQRYRDQIK 63 (873)
Q Consensus 54 KLQR~RDQIK 63 (873)
||.-+|+.++
T Consensus 536 Kle~Lk~~~~ 545 (762)
T PLN03229 536 KLDMLNEFSR 545 (762)
T ss_pred HHHHHHHHHH
Confidence 4555666555
No 130
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=67.68 E-value=54 Score=42.11 Aligned_cols=75 Identities=16% Similarity=0.283 Sum_probs=44.5
Q ss_pred HHHhhhHHHhHH-HHHHHHHHhhcCCCchh-----HHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHH
Q 002856 12 DRVLKKVQEGVD-VFDSIWNKVYDTDNANQ-----KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALV 85 (873)
Q Consensus 12 Dr~lKKV~EGve-~Fd~i~~K~~~a~n~nQ-----KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~ 85 (873)
-+.++-+.|+-. .|++.|-|+..-.+.++ -|-||..+-...|-|+.++|--|..+--.+ +|+
T Consensus 382 rrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~e------------kl~ 449 (1195)
T KOG4643|consen 382 RRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELE------------KLL 449 (1195)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
Confidence 355666666643 68888888876666554 355666666666666666666665443222 455
Q ss_pred HHHHHHHHHHHHH
Q 002856 86 DARKLIEREMERF 98 (873)
Q Consensus 86 e~Rk~IE~~MErF 98 (873)
+.-+-.+.-|+|.
T Consensus 450 ~e~~t~~~s~~rq 462 (1195)
T KOG4643|consen 450 EETSTVTRSLSRQ 462 (1195)
T ss_pred HHHHHHHHhHHHH
Confidence 5445555555555
No 131
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=67.34 E-value=41 Score=42.24 Aligned_cols=113 Identities=24% Similarity=0.304 Sum_probs=66.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHH-------HHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 002856 38 ANQKEKFEADLKKEIKKLQRYRDQI-------KTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAF 110 (873)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQI-------KtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKaf 110 (873)
-+|||-+--.|+.|+.-|+.-|-+- ...+.-.-.|=++-.|-....|+|+|+..|-==+.--++||+--
T Consensus 286 lSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd---- 361 (1265)
T KOG0976|consen 286 LSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRD---- 361 (1265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH----
Confidence 4678888888888888888777442 22333222333334566777888888888877777777777542
Q ss_pred cccccCCCCCCCchHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002856 111 SKEGLGQQPKTDPKEKAK--SETRDWLNNLVSELESQIDSFEAELEGLTV 158 (873)
Q Consensus 111 SkEGL~~~~k~Dp~ekek--~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~ 158 (873)
..|+..-++ .++.+ .+..+-|.....+++.|||.+..-|-.+..
T Consensus 362 --~al~dvr~i--~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~ 407 (1265)
T KOG0976|consen 362 --MALMDVRSI--QEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQ 407 (1265)
T ss_pred --HHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 233321111 11111 112334455566777788777777766643
No 132
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=67.31 E-value=30 Score=37.41 Aligned_cols=41 Identities=7% Similarity=0.315 Sum_probs=22.6
Q ss_pred HHhhhHHHhHH--HHHHHHHHhhcCCC--chhHHHHHHHHHHHHH
Q 002856 13 RVLKKVQEGVD--VFDSIWNKVYDTDN--ANQKEKFEADLKKEIK 53 (873)
Q Consensus 13 r~lKKV~EGve--~Fd~i~~K~~~a~n--~nQKEKlE~DLKKEIK 53 (873)
+.++++.+|.+ .|...|+.+..... +++++.+-..|..+|.
T Consensus 48 k~~~~~~~~~e~gsl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~ 92 (258)
T cd07655 48 KWRDLIEKGPEYGTLETAWKGLLSEAERLSELHLSIRDKLLNDVV 92 (258)
T ss_pred HHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444544433 46677777765432 4566666666665554
No 133
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=67.01 E-value=79 Score=41.40 Aligned_cols=62 Identities=10% Similarity=0.142 Sum_probs=44.7
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~ 69 (873)
--+.|.+++++.|.|....=.++++|-+.+--.. +..-+.+.+-++.|+.+=.||+.++...
T Consensus 1426 ~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a--~as~~q~~~s~~el~~Li~~v~~Flt~~ 1487 (1758)
T KOG0994|consen 1426 SKLAEAEQTLSMVREAKLSASEAQQSAQRALEQA--NASRSQMEESNRELRNLIQQVRDFLTQP 1487 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3457899999999999999888888876553211 1222334456778888888999998765
No 134
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=66.50 E-value=2.1e+02 Score=33.74 Aligned_cols=160 Identities=17% Similarity=0.266 Sum_probs=0.0
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhh----------------------cCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVY----------------------DTDNANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~----------------------~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~ 66 (873)
.|||+.|++|.+-+......+.+++ --...=-++--|.+|.||.-=+...+.++|.-+
T Consensus 87 ~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~ia~eCL~~RekR~~~dlv~D~Ve~EL~kE~eli~~~q~ll~~~~ 166 (421)
T KOG2685|consen 87 GELDRELEDLAAEIDDLLHEKRRLERALNALALPLSIAEECLAHREKRQGIDLVHDEVETELHKEVELIENIQELLKKTL 166 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcccchhhccccHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccC--------------CCCCCCchH-------
Q 002856 67 QSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLG--------------QQPKTDPKE------- 125 (873)
Q Consensus 67 ~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~--------------~~~k~Dp~e------- 125 (873)
.--+.+=-. +.++|+.+|...+- |.-||.=.-.. .+.+.||..
T Consensus 167 ~~a~~Ql~~--------nr~ar~~Le~Dl~d--------K~eA~~ID~~c~~L~~~S~~I~~~p~~~R~~~~~~s~e~W~ 230 (421)
T KOG2685|consen 167 ERAEEQLRL--------NREARQNLERDLSD--------KQEAYEIDEKCLALNNNSPNISYKPDPTRVPPNSSSPESWA 230 (421)
T ss_pred HHHHHHHHH--------hHHHHHHHhhhhhh--------hhhhheechhhhhhcCCCCCeeccCCCccCCCCCCCHHHHH
Q ss_pred ------------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 002856 126 ------------------KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLEL 187 (873)
Q Consensus 126 ------------------kek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~ 187 (873)
+-|..+..-|.++-.+|+.|-+..|.-+-+ ||.+.+..-.+..||+.|.-.
T Consensus 231 ~fs~~nl~~ae~er~~S~~LR~~l~~~l~~tan~lr~Q~~~ve~af~~-----------ri~etqdar~kL~~ql~k~le 299 (421)
T KOG2685|consen 231 KFSGDNLDRAERERAASAALREALDQTLRETANDLRTQADAVELAFKK-----------RIRETQDARNKLEWQLAKTLE 299 (421)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhCC
Q 002856 188 ILRLLDND 195 (873)
Q Consensus 188 lLRlL~N~ 195 (873)
=+.-.+|.
T Consensus 300 Ei~~~e~~ 307 (421)
T KOG2685|consen 300 EIADAENN 307 (421)
T ss_pred HHHHHHhH
No 135
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=66.39 E-value=75 Score=34.36 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHH
Q 002856 38 ANQKEKFEADLKKEIKKLQRYRDQIKT 64 (873)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKt 64 (873)
+++...+-..|+.+|++|.+||+-.|.
T Consensus 73 a~~H~~ia~~L~~~~~~l~~f~~~qke 99 (242)
T cd07671 73 GNSHIQLAGMLREELKSLEEFRERQKE 99 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777766654443
No 136
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=66.19 E-value=2.4e+02 Score=32.20 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 002856 137 NLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 137 ~~IdeL~~QiE~~EaE~E~L 156 (873)
..++.++.|++.+|.|+-.+
T Consensus 133 ~qLEk~~~q~~qLe~d~qs~ 152 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDLQSL 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999888665
No 137
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.98 E-value=2.2e+02 Score=38.56 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=10.7
Q ss_pred ChhhhhhhhhHHHHHHHh
Q 002856 198 SPEQVNDVKDLLEDYVER 215 (873)
Q Consensus 198 ~pe~V~~ikddieyYve~ 215 (873)
+++.++.+.++.+.-+|.
T Consensus 552 ~~~~~~~~~~~~~~~~~~ 569 (1486)
T PRK04863 552 DEDELEQLQEELEARLES 569 (1486)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 366776666655555543
No 138
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=65.57 E-value=48 Score=34.97 Aligned_cols=31 Identities=13% Similarity=0.398 Sum_probs=21.7
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcC
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDT 35 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a 35 (873)
.|||+++.+++++|..--..|+..+.....+
T Consensus 115 ~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a 145 (251)
T cd07653 115 SKLQQKLESSIKQLEKSKKAYEKAFKEAEKA 145 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888887777777777776554433
No 139
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=65.50 E-value=1.6e+02 Score=39.15 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=42.0
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002856 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (873)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (873)
.++||.||...-.+|+|-.+-|-..-..++.+... +|+++++=-.+++=.|..|.+|..|.+.
T Consensus 887 ~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~--~e~~k~~~~~~~~~aqk~~~~ine~~s~ 949 (1294)
T KOG0962|consen 887 IEELSEEITRLDSKVKELLERIQPLKVELEEAQSE--KEELKNERNTSEKLAQKKRNDINEKVSL 949 (1294)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999998888886655555433222 3333332222678889999999888654
No 140
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=65.27 E-value=57 Score=31.55 Aligned_cols=96 Identities=15% Similarity=0.205 Sum_probs=58.0
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC--chhHHHHHHHHHHHHHHHHHhHHHHHH---hhcc-------cccccc
Q 002856 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQRYRDQIKT---WIQS-------SEIKDK 74 (873)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n--~nQKEKlE~DLKKEIKKLQR~RDQIKt---W~~s-------~eIKDK 74 (873)
+=++|...+.+|+.-|..++..+..+..+.. ..-|++|+.-...=-+.....+..||. +... .+.+-+
T Consensus 7 ~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~ 86 (151)
T cd00179 7 EVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIR 86 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHH
Confidence 4468999999999999999999999998876 234666665322111111122222222 2111 111111
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002856 75 KVSASYEQALVDARKLIEREMERFKICEKETKTK 108 (873)
Q Consensus 75 ~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtK 108 (873)
+ ....-.++.+-..|.+|..++++.|.+
T Consensus 87 ~------~q~~~L~~~f~~~m~~fq~~Q~~~~~~ 114 (151)
T cd00179 87 K------TQHSGLSKKFVEVMTEFNKAQRKYRER 114 (151)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 234445677788999999999888743
No 141
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=65.26 E-value=37 Score=34.72 Aligned_cols=16 Identities=31% Similarity=0.492 Sum_probs=11.9
Q ss_pred HHhHHHHHHHHHHHHH
Q 002856 125 EKAKSETRDWLNNLVS 140 (873)
Q Consensus 125 ekek~E~~~wL~~~Id 140 (873)
|..|-++..|+--+|-
T Consensus 148 E~~K~~~lr~~~g~i~ 163 (177)
T PF07798_consen 148 ESLKWDTLRWLVGVIF 163 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6678888889876653
No 142
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.02 E-value=1.2e+02 Score=35.33 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 002856 165 PPRLTHLETSITRHKAHIMKLE 186 (873)
Q Consensus 165 ~~r~~~le~~ierhk~Hi~kLE 186 (873)
.+|.-+|.+.||..+-+|.|||
T Consensus 297 ~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 297 YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3577789999999999999999
No 143
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=64.92 E-value=37 Score=40.39 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHH
Q 002856 84 LVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQID 147 (873)
Q Consensus 84 L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE 147 (873)
|.|.-|.+-..--.|-.-++.||.|.=+--|++. ++.-.=.+|+|-..-|+.-+|+|+.|++
T Consensus 300 l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~--kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 300 LREKWRALKSDSNKYENYVNAMKQKSQEWPGKLE--KLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344444444555677777888888777667653 2333335677788889999999988853
No 144
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=64.89 E-value=1e+02 Score=28.17 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=14.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
+..+.++...+...+..|+..=+.+=.+++..
T Consensus 38 ~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~ 69 (127)
T smart00502 38 ADVEAQIKAAFDELRNALNKRKKQLLEDLEEQ 69 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555544444444444443
No 145
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.61 E-value=1.2e+02 Score=38.42 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=39.1
Q ss_pred hhhccccccccccCC-CCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002856 103 KETKTKAFSKEGLGQ-QPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV 158 (873)
Q Consensus 103 Ke~KtKafSkEGL~~-~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~ 158 (873)
-..|.|+++.-+-.. ...+..+-.+|+.+|.-|++.+++|.+.+|+--.|++.+.+
T Consensus 514 ~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~ 570 (1118)
T KOG1029|consen 514 HQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNN 570 (1118)
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 345666666544433 22233445678889999999999999999888888888753
No 146
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=64.37 E-value=1.4e+02 Score=35.25 Aligned_cols=58 Identities=28% Similarity=0.485 Sum_probs=39.8
Q ss_pred cccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHH------HHHHHHHHHHHhHH
Q 002856 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEA------DLKKEIKKLQRYRD 60 (873)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~------DLKKEIKKLQR~RD 60 (873)
.+.||-.|-|++|.||++-=++-|.+-.-|..-.-.--+-+||. .++|||||||.|=+
T Consensus 211 ~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~ 274 (426)
T smart00806 211 SKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYID 274 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688899999999999988888888777765444333444443 45666666665543
No 147
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=64.32 E-value=81 Score=39.21 Aligned_cols=50 Identities=30% Similarity=0.328 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHH-------HHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 002856 41 KEKFEADLKKEIKKL-------QRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF 98 (873)
Q Consensus 41 KEKlE~DLKKEIKKL-------QR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErF 98 (873)
..|||+|+||==--| |.||.||..-.+ +|---|. -|...|+..|+-.-++
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~-~Er~lk~-------eL~qlr~ene~Lq~Kl 476 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTN-NERSLKS-------ELSQLRQENEQLQNKL 476 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc-cchHHHH-------HHHHHHHHHHHHHHHH
Confidence 467777766622223 567788876555 3333333 6666666666544443
No 148
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=64.22 E-value=30 Score=43.03 Aligned_cols=145 Identities=14% Similarity=0.213 Sum_probs=76.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhhccc--cccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 002856 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS--EIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGL 115 (873)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~--eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL 115 (873)
.|-|+.||+- -.+-+||+--=.-|-.|+.-- +|++.- ++.----++-.+-+-.|++-||.|+|.++--.-
T Consensus 88 ~~ir~~lea~-~~~w~kl~~~l~el~~wl~~kd~el~~q~-------p~ggd~~avq~q~~~~~a~~re~k~k~~~~~s~ 159 (966)
T KOG4286|consen 88 LNIRSHLEAS-SDQWKRLHLSLQELLVWLQLKDDELSRQA-------PIGGDFPAVQKQNDVHRAFKRELKTKEPVIMST 159 (966)
T ss_pred HHHHHHHHHH-HHHHHHHhhhHHHHHHHHHhhhHHHHhcC-------CCCCChHHHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 3445555553 234556665555666787643 333332 232233455667788899999999998763221
Q ss_pred --------CC---------CCCCCchHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHH
Q 002856 116 --------GQ---------QPKTDPKEKAKSE-TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITR 177 (873)
Q Consensus 116 --------~~---------~~k~Dp~ekek~E-~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ier 177 (873)
+. +++.+-.++++.+ ...+|...-+++++.-|.+.++.+.- .|+--+.-+|+.+|+..++.
T Consensus 160 ~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w-~k~v~~~le~l~elq~a~~e 238 (966)
T KOG4286|consen 160 LETARIFLTEQPLEGLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADW-QRKIDETLERLQELQEATDE 238 (966)
T ss_pred HHHHHHHHhcCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 11 1111111222222 33333333344444433333333222 12323334688888888888
Q ss_pred HHHHHHHHHHHHHh
Q 002856 178 HKAHIMKLELILRL 191 (873)
Q Consensus 178 hk~Hi~kLE~lLRl 191 (873)
...|+..-|.+..-
T Consensus 239 l~~~l~~ae~~~~~ 252 (966)
T KOG4286|consen 239 LDLKLRQAEVIKGS 252 (966)
T ss_pred HHHhhhHHHhhhhc
Confidence 88888887776543
No 149
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=64.21 E-value=37 Score=31.02 Aligned_cols=56 Identities=18% Similarity=0.358 Sum_probs=43.9
Q ss_pred hhHHHHhhhHHHhHHH----HHHH---HHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHH
Q 002856 9 GEIDRVLKKVQEGVDV----FDSI---WNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKT 64 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~----Fd~i---~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKt 64 (873)
.....+||.+++-+.. |..+ |.++..+.+..+|+.|+.+|++=+|+|-.--|||..
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~ 75 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665543 3444 777788888999999999999999999999999965
No 150
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=63.97 E-value=67 Score=34.72 Aligned_cols=78 Identities=22% Similarity=0.155 Sum_probs=49.8
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHh----------hcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcccccccc
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKV----------YDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK 74 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~----------~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK 74 (873)
+|+|+=....+|+|..--..|+.-+.+. ....+..|.||+++-|+|...-+++.++.-+.-+
T Consensus 109 eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK~~~K~~k~~~~~~~a~~~Y~~~v-------- 180 (242)
T cd07671 109 ERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEKSQNKAKQCRDAATEAERVYKQNI-------- 180 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 4555555556777777777787666443 3334455677777777777777776665443322
Q ss_pred ccchhhHHHHHHHHHHHHHHHHH
Q 002856 75 KVSASYEQALVDARKLIEREMER 97 (873)
Q Consensus 75 ~~~~~~~~~L~e~Rk~IE~~MEr 97 (873)
..|.+.|-.-|+.|+.
T Consensus 181 -------~~l~~~~~~w~~~~~~ 196 (242)
T cd07671 181 -------EQLDKARTEWETEHIL 196 (242)
T ss_pred -------HHHHHHHHHHHHHHHH
Confidence 2466888888888875
No 151
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=63.50 E-value=48 Score=41.00 Aligned_cols=129 Identities=16% Similarity=0.229 Sum_probs=75.0
Q ss_pred HHHHhHHHHHHhhcccccc-----------ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC--
Q 002856 54 KLQRYRDQIKTWIQSSEIK-----------DKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK-- 120 (873)
Q Consensus 54 KLQR~RDQIKtW~~s~eIK-----------DK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k-- 120 (873)
+|++-+|.|+.-+..+|.. || ...++++.+...||.||..--++..+.++.| +.-|.+.....+
T Consensus 556 el~~k~~Ev~~kl~ksEen~r~~e~e~~~k~k-q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk--~LKKk~~aE~kq~~ 632 (786)
T PF05483_consen 556 ELKQKGEEVKCKLDKSEENARSIECEILKKEK-QMKILENKCNNLRKQVENKNKNIEELQQENK--ALKKKITAESKQSN 632 (786)
T ss_pred HHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4556677777776665443 22 3567888999999999998888888777754 444444432111
Q ss_pred -----CCchHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhc-----ccCCCC-----chhhHHHHHHHHHH
Q 002856 121 -----TDPKEKAKSETRDWLNNLVSELESQI-------DSFEAELEGLTV-----KKGKTR-----PPRLTHLETSITRH 178 (873)
Q Consensus 121 -----~Dp~ekek~E~~~wL~~~IdeL~~Qi-------E~~EaE~E~Ls~-----KK~K~~-----~~r~~~le~~ierh 178 (873)
+.-.+.+-..+..-....++.+.+.| +.|..|+|++.. =|.++. +.+|++.-+.+++|
T Consensus 633 ~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKH 712 (786)
T PF05483_consen 633 VYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKH 712 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 11112222222223333333333333 345555555521 122221 56899999999999
Q ss_pred HHHHHHH
Q 002856 179 KAHIMKL 185 (873)
Q Consensus 179 k~Hi~kL 185 (873)
+.|..|+
T Consensus 713 K~qYDki 719 (786)
T PF05483_consen 713 KHQYDKI 719 (786)
T ss_pred HHHHHHH
Confidence 9999876
No 152
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.30 E-value=37 Score=36.15 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=20.9
Q ss_pred hhhHHHHhhhHHHhHHHHHHHHHHh
Q 002856 8 QGEIDRVLKKVQEGVDVFDSIWNKV 32 (873)
Q Consensus 8 Q~EIDr~lKKV~EGve~Fd~i~~K~ 32 (873)
|.++++.+++|-|-+..|..+..-+
T Consensus 78 q~qv~~l~~~v~epLk~Y~~l~k~~ 102 (211)
T cd07598 78 QAEVERLEAKVVQPLALYGTICKHA 102 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999888433
No 153
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.23 E-value=2.4e+02 Score=31.46 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 002856 135 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (873)
Q Consensus 135 L~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~ 196 (873)
|+.+|+.=+..++.++.+-..|..| ...++..++...-|+..||..+.-|++..
T Consensus 139 i~~iv~aDk~ile~qk~dk~~Le~k--------q~~l~~~~e~l~al~~e~e~~~~~L~~qk 192 (265)
T COG3883 139 ISVIVDADKKILEQQKEDKKSLEEK--------QAALEDKLETLVALQNELETQLNSLNSQK 192 (265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666665444322 23456666666777777777777666543
No 154
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=63.18 E-value=3.2e+02 Score=32.58 Aligned_cols=116 Identities=24% Similarity=0.234 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh---h--ccccccccccCCCCCCCc------hHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002856 83 ALVDARKLIEREMERFKICEKE---T--KTKAFSKEGLGQQPKTDP------KEKAKSETRDWLNNLVSELESQIDSFEA 151 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEKe---~--KtKafSkEGL~~~~k~Dp------~ekek~E~~~wL~~~IdeL~~QiE~~Ea 151 (873)
.|.-.-..+|.+|..||....- . |..++=|+|... ...|. .+.- ..-++.+++-|..|+.||+.+++
T Consensus 225 l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~-~~~~~~~~~~el~~l-~~E~~~~~ee~~~l~~Qi~~l~~ 302 (511)
T PF09787_consen 225 LLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE-EGFDSSTNSIELEEL-KQERDHLQEEIQLLERQIEQLRA 302 (511)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc-cccccccchhcchhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455677889999954211 1 112222221111 11121 1222 33456788899999999999998
Q ss_pred HHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHH
Q 002856 152 ELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 214 (873)
Q Consensus 152 E~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve 214 (873)
|+..+. .++....+.++-|+..|+..+..+-.- -+++.-+...+.+|-+
T Consensus 303 e~~d~e-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~---e~e~~l~~~el~~~~e 351 (511)
T PF09787_consen 303 ELQDLE-----------AQLEGEQESFREQPQELSQQLEPELTT---EAELRLYYQELYHYRE 351 (511)
T ss_pred HHHHHH-----------HHHHhHHHHHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHH
Confidence 875542 234444455566666666555443322 3344444444444443
No 155
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=63.05 E-value=33 Score=40.53 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 002856 79 SYEQALVDARKLIEREMERFKICEKETKTKAFSKEGL 115 (873)
Q Consensus 79 ~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL 115 (873)
.+-.+|..+|+.+|+.|.++-. ++-.-.|+|-++-+
T Consensus 325 ll~sqleSqr~y~e~~~~e~~q-sqlen~k~~~e~~~ 360 (493)
T KOG0804|consen 325 LLTSQLESQRKYYEQIMSEYEQ-SQLENQKQYYELLI 360 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH-HHHHhHHHHHHHHH
Confidence 3445899999999999988655 33344555555544
No 156
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=62.98 E-value=74 Score=36.05 Aligned_cols=81 Identities=22% Similarity=0.270 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHH----HHHHhhhhc---ccCCCCchhhHHHHHHHHH-HHHHHHHHHHHHHhhhCCCCC----hhhhhhh
Q 002856 138 LVSELESQIDSF----EAELEGLTV---KKGKTRPPRLTHLETSITR-HKAHIMKLELILRLLDNDELS----PEQVNDV 205 (873)
Q Consensus 138 ~IdeL~~QiE~~----EaE~E~Ls~---KK~K~~~~r~~~le~~ier-hk~Hi~kLE~lLRlL~N~~l~----pe~V~~i 205 (873)
-|+.|+++-|.| |.|-|.|.. ||-.+=...+.+|+..+++ +.|||.+|-..|..|.++... -+++..-
T Consensus 85 kl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~E 164 (310)
T PF09755_consen 85 KLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRRE 164 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 355666655544 333333421 3332222334478888866 789999999999999876543 4667777
Q ss_pred hhHHHHHHHhCCC
Q 002856 206 KDLLEDYVERNQD 218 (873)
Q Consensus 206 kddieyYve~nqd 218 (873)
|=|+|.-+|..|+
T Consensus 165 KVdlEn~LE~EQE 177 (310)
T PF09755_consen 165 KVDLENTLEQEQE 177 (310)
T ss_pred HHhHHHHHHHHHH
Confidence 8889999997776
No 157
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=62.97 E-value=3.3 Score=49.38 Aligned_cols=144 Identities=53% Similarity=0.978 Sum_probs=140.0
Q ss_pred CcccccccccchHHhhhhCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhccCCCCCcceEEEeecCCCh
Q 002856 714 GMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNT 793 (873)
Q Consensus 714 ~~~e~~LNLns~E~ly~tF~sPwdsep~r~~~P~~p~~~P~cY~~~p~p~l~~p~~f~K~ki~~f~~ETLFYIFYs~PgD 793 (873)
+++++..++-+.|.+|...+.|.+++.++.|+|++|+.+|++|++++++.++...+|.| |+.|||||||||++|+
T Consensus 431 ~~~e~i~~~~~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~~~~q~~~~~~ds~~~~~r-----l~~dTLFfiFY~~qgt 505 (575)
T KOG2150|consen 431 ITNEQIRFLYALEAACKLVPIPSDSEKPQGYLPKTPLPTPSYFPQTPPSLTDSTEITER-----LDPDTLFFIFYYQQGT 505 (575)
T ss_pred ccccccchHHHHHhhhccCCCCchhhcccCCCCCCCCCCCccCCCCCCcccchhhHHhh-----ccccceeeEEeeecch
Confidence 66899999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHhhcccccccccceeeeccCCCcccCCCcceEEEEEEcCcCCccccccccccccccceEEeccchhhh
Q 002856 794 YQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 870 (873)
Q Consensus 794 ~~Ql~AA~EL~~RgWRYHkk~~~Wf~R~~eP~~~t~~yErGsY~~FDp~~~~~~~~~~W~qk~K~eFtleY~~LE~r 870 (873)
+.|++||+||++|+||||++|.+||+|+.||+.+|+.||+|.|+|||+ ..||+|+|.+|+|+|.|||+.
T Consensus 506 ~eQylAaKeLkk~sWrfhkky~tWFqR~~EpK~itd~~E~G~y~yFD~--------~~W~qrkK~dFtfeY~yLE~~ 574 (575)
T KOG2150|consen 506 YEQYLAAKELKKRSWRFHKKYTTWFQRHEEPKNITDIYEQGDYRYFDY--------KDWSQRKKIDFTFEYQYLEDS 574 (575)
T ss_pred HHHHHHHHHHhhcceeEeecceeEeeeccCccchhhhhhcCceEEEeh--------hHhhhhhccceeeehhhccCC
Confidence 999999999999999999999999999999999999999999999999 589999999999999999975
No 158
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=62.58 E-value=98 Score=33.84 Aligned_cols=63 Identities=27% Similarity=0.360 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002856 84 LVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELE 154 (873)
Q Consensus 84 L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E 154 (873)
+....+.+...+.. ..||-.-. ..-|. ....|.-+++.+..+=...-++.|+.+++...++++
T Consensus 151 ~~~~~~~~~~~~~~-~~~E~~g~----~~tg~---~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 151 IDQLEKEIDRAQQE-AQCEIFGT----GGTGV---PGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHHHHH-HHHhhcCC----CCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344444444433 34666554 22222 234677777777777677777777777666665554
No 159
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.49 E-value=27 Score=41.10 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=19.2
Q ss_pred hhHHHhHHHHHHHHHHhhcCCCchhHHHHHH
Q 002856 16 KKVQEGVDVFDSIWNKVYDTDNANQKEKFEA 46 (873)
Q Consensus 16 KKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~ 46 (873)
-+++--...|++++.++..+.-.|||+.||.
T Consensus 328 sqleSqr~y~e~~~~e~~qsqlen~k~~~e~ 358 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQSQLENQKQYYEL 358 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445555566677777766556666666663
No 160
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=62.18 E-value=30 Score=42.56 Aligned_cols=57 Identities=35% Similarity=0.347 Sum_probs=32.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002856 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEK 103 (873)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEK 103 (873)
.+-|||.|..|+|+|||-||-.+-=--==-...-|+|+ +.+.+-|+.| ||||++++|
T Consensus 291 E~~kekee~Klekd~KKqqkekEkeEKrrKdE~Ek~kK------qeek~KR~k~---~Erkee~~r 347 (811)
T KOG4364|consen 291 ENNKEKEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKK------QEEKQKRAKI---MERKEEKSR 347 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH------HHHHHHHHHH---HHHHHHHhh
Confidence 45599999999999999987543211100111122333 2344444544 688877766
No 161
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=61.99 E-value=3.2e+02 Score=32.06 Aligned_cols=65 Identities=14% Similarity=0.268 Sum_probs=36.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-------CCCc---hhhHHHHHHHHHHHHHHHHHHHHH
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG-------KTRP---PRLTHLETSITRHKAHIMKLELIL 189 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~-------K~~~---~r~~~le~~ierhk~Hi~kLE~lL 189 (873)
..-+....+.....+..+.+.|+.+...++......+ +.-+ .++--......|-+.-+.+|+.++
T Consensus 345 p~I~~~l~~~~~~ll~~~~~ei~~~~~~f~~~~~~~~~~~~~~~~~~Ppvag~i~w~r~L~~ri~~~~~~~~~~~ 419 (579)
T PF08385_consen 345 PRIRKALQEKYEQLLQQFKEEIDQLKKIFDNQKEKSETDNPPLPRNLPPVAGAIIWARQLERRIKEPMQRLKSLL 419 (579)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCcHHHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 3344556666667777777777777777766432111 1111 244445555556666666666666
No 162
>PRK10780 periplasmic chaperone; Provisional
Probab=61.97 E-value=70 Score=32.27 Aligned_cols=90 Identities=9% Similarity=0.182 Sum_probs=49.7
Q ss_pred chhhhHHHHhhh----HHHhHHHHHHHHHHhhcC---CCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccch
Q 002856 6 KLQGEIDRVLKK----VQEGVDVFDSIWNKVYDT---DNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSA 78 (873)
Q Consensus 6 KLQ~EIDr~lKK----V~EGve~Fd~i~~K~~~a---~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~ 78 (873)
+.+.++++-++. ++.=...|+..+++++.. -+..+|++.|.+|.+..+.+|+...+... |+.-
T Consensus 43 ~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~~~qq-----~~~~----- 112 (165)
T PRK10780 43 GVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQAFEQ-----DRRR----- 112 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-----
Confidence 444444444444 444445777777788543 34567888888876655555555544321 1111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 002856 79 SYEQALVDARKLIEREMERFKICEKETKTKAFS 111 (873)
Q Consensus 79 ~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafS 111 (873)
...+.++-|-.++. ++|++-.|.+.|+
T Consensus 113 ----~~~e~~~~i~~ki~--~ai~~vak~~gy~ 139 (165)
T PRK10780 113 ----RSNEERNKILTRIQ--TAVKSVANKQGYD 139 (165)
T ss_pred ----HHHHHHHHHHHHHH--HHHHHHHHHcCCe
Confidence 23333344444444 4577778888776
No 163
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=61.94 E-value=1.9e+02 Score=31.99 Aligned_cols=41 Identities=15% Similarity=0.379 Sum_probs=34.0
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH
Q 002856 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR 57 (873)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR 57 (873)
-++++|+|..|...=+++-+=+. +|-++|.+--|.+.+|-|
T Consensus 7 Y~~~vkR~~dG~~~C~el~~f~~------eRA~IE~~YAk~L~~lak 47 (258)
T cd07681 7 YRRTVKRIEDGYRLCNDLVSCFQ------ERAKIEKGYAQQLSDWAR 47 (258)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 47899999999999888877663 688899888888888764
No 164
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=61.13 E-value=1.8e+02 Score=31.22 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=49.0
Q ss_pred HhHHHHHHHHHHhhcCCC--chhHHHHHHHHHHHHHHHHHhHHHHHH-hhcc-ccccccccchhhHHHHHHHHHHHHHHH
Q 002856 20 EGVDVFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQRYRDQIKT-WIQS-SEIKDKKVSASYEQALVDARKLIEREM 95 (873)
Q Consensus 20 EGve~Fd~i~~K~~~a~n--~nQKEKlE~DLKKEIKKLQR~RDQIKt-W~~s-~eIKDK~~~~~~~~~L~e~Rk~IE~~M 95 (873)
.|++.+...++.+..... .++=+..+..|..|...-+++|.+..+ |--. ++.- .+.+...|..+|+.++...
T Consensus 22 ~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~----~~~l~~~l~~~~~~L~~A~ 97 (296)
T PF13949_consen 22 GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSEL----NASLRKELQKYREYLEQAS 97 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHH----CHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhh----HHHHHHHHHHHHHHHHHHH
Confidence 355555555555544332 334677888999999999999999864 6333 2222 2345667777777777765
Q ss_pred HHHHHH
Q 002856 96 ERFKIC 101 (873)
Q Consensus 96 ErFK~v 101 (873)
+-.+.|
T Consensus 98 ~sD~~~ 103 (296)
T PF13949_consen 98 ESDSQL 103 (296)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 544443
No 165
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=60.94 E-value=49 Score=40.36 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhh
Q 002856 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVND 204 (873)
Q Consensus 127 ek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ 204 (873)
+...-.+=|++.|++|..+|+.++.+++.+...-++ -..++++.+...++..--+.-.+.++.||.+..-..++++.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q-~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~ 401 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQ-LEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQA 401 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334456678888999999999999999888542221 11223333333344444444444455555554433333333
No 166
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=60.46 E-value=38 Score=35.79 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCCCccCCccccccC
Q 002856 181 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHL 232 (873)
Q Consensus 181 Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~nqddf~ef~dde~iYd~ 232 (873)
....+..+++.+. .|+-+.|.-+|+.|--|...-.. .+..||..|+.
T Consensus 187 ~~~~~~~~~~~~Q--~lEe~Ri~~lk~~l~~~a~~~s~---~cv~~d~~~e~ 233 (236)
T cd07651 187 WNREWKAALDDFQ--DLEEERIQFLKSNCWTFANNIST---LCVDDDESCER 233 (236)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHcCcHHHHHH
Confidence 3444455555543 35567777788877777653322 12234455553
No 167
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=60.34 E-value=1.7e+02 Score=33.46 Aligned_cols=135 Identities=21% Similarity=0.317 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc-----ccccccCCCCC-C
Q 002856 48 LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKA-----FSKEGLGQQPK-T 121 (873)
Q Consensus 48 LKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKa-----fSkEGL~~~~k-~ 121 (873)
|-+|+-+-|.-|||.| .++|+=+|||..++|..+.-- |.+.++..... .
T Consensus 14 L~~eLe~cq~ErDqyK-------------------------lMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~ 68 (319)
T PF09789_consen 14 LSQELEKCQSERDQYK-------------------------LMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENK 68 (319)
T ss_pred HHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchh
Confidence 6678888888888876 345666677777776544333 33333322110 0
Q ss_pred C--chHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--c------C---CCCchhhHHHHHHHHHHHHHHHHHHHH
Q 002856 122 D--PKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK--K------G---KTRPPRLTHLETSITRHKAHIMKLELI 188 (873)
Q Consensus 122 D--p~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~K--K------~---K~~~~r~~~le~~ierhk~Hi~kLE~l 188 (873)
. ..=.+-.|-..=|..-|++|+..+..+.-|+.-|..+ + + +......+.|-..+|+-+..+..||.=
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d 148 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERD 148 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0001112222334444555555555555554444221 1 0 011234566666778888888899888
Q ss_pred HHhhhCCCCChhhhhhhhhHHHHHH
Q 002856 189 LRLLDNDELSPEQVNDVKDLLEDYV 213 (873)
Q Consensus 189 LRlL~N~~l~pe~V~~ikddieyYv 213 (873)
++.+ .|+.+++.-+-++|-
T Consensus 149 ~qs~------lDEkeEl~~ERD~yk 167 (319)
T PF09789_consen 149 LQSL------LDEKEELVTERDAYK 167 (319)
T ss_pred HHHH------HHHHHHHHHHHHHHH
Confidence 8865 355555555555554
No 168
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=60.19 E-value=1.9e+02 Score=30.70 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=10.6
Q ss_pred chhhhHHHHhhhHHHhHH
Q 002856 6 KLQGEIDRVLKKVQEGVD 23 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve 23 (873)
+++.+.+++-.+|++-++
T Consensus 31 ~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 31 QLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666666666655
No 169
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=59.46 E-value=1.6e+02 Score=27.72 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=22.9
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHhHHHHHHhhc
Q 002856 11 IDRVLKKVQEGVDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKTWIQ 67 (873)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~~K~~~a~n-~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~ 67 (873)
++...+++.+....+++.++++..... +..|+.+ ..+++..+.....++++-....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~y~~~~~~~~~~~~ 133 (181)
T PF12729_consen 77 RQEIEKEIDEARAEIDEALEEYEKLILSPEEKQLL-EEFKEAWKAYRKLRDQVIELAK 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443321 1223222 2344444444444444444333
No 170
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=58.66 E-value=4e+02 Score=32.22 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhCCCCChhhhhhhhhHHHHHHH
Q 002856 183 MKLELILRLLDNDELSPEQVNDVKDLLEDYVE 214 (873)
Q Consensus 183 ~kLE~lLRlL~N~~l~pe~V~~ikddieyYve 214 (873)
..++.|...|+.-.|+.+.|...-+.+...|+
T Consensus 451 ~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~ 482 (560)
T PF06160_consen 451 DEIEELSDELNQVPINMDEVNKQLEEAEDDVE 482 (560)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHH
Confidence 56777888888888998888876555555555
No 171
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=58.41 E-value=2.6e+02 Score=30.12 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=20.8
Q ss_pred hhHHHhHHHHHHHHHHhhcCCC--chhHHHHHHHHHHHH-HHHHHhH
Q 002856 16 KKVQEGVDVFDSIWNKVYDTDN--ANQKEKFEADLKKEI-KKLQRYR 59 (873)
Q Consensus 16 KKV~EGve~Fd~i~~K~~~a~n--~nQKEKlE~DLKKEI-KKLQR~R 59 (873)
|.+..+.-.|...|+.|..... +++.+.+-.-|..|| +.|..++
T Consensus 51 k~~~~~~Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~ 97 (239)
T cd07658 51 KASKSVSGTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVL 97 (239)
T ss_pred HhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444467777776654332 334444444444443 3444333
No 172
>PTZ00332 paraflagellar rod protein; Provisional
Probab=58.24 E-value=2.4e+02 Score=34.22 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHH
Q 002856 137 NLVSELESQIDSFEAELEGLTVKK----GKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY 212 (873)
Q Consensus 137 ~~IdeL~~QiE~~EaE~E~Ls~KK----~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyY 212 (873)
+-|.+|.+|+..+-.|--.. +|+ .+....|..+.+.+++----|-.+|+.++- ..+....+-..|+.|
T Consensus 324 nrI~eLer~Lq~l~~eR~~e-V~rRIe~~~rEekRr~~yeqFl~~asQHkqrL~~tv~-------Ncd~a~~~~~~lee~ 395 (589)
T PTZ00332 324 NKIQDLERQLQRLGTERFEE-VKRRIEENDREEKRRVEYQQFLEVAGQHKKLLELTVY-------NCDLALRCTGLVEEL 395 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 45566666555554332111 111 112245788888899888889899988876 345555666666666
Q ss_pred HHhC
Q 002856 213 VERN 216 (873)
Q Consensus 213 ve~n 216 (873)
|.+.
T Consensus 396 V~eg 399 (589)
T PTZ00332 396 VSEG 399 (589)
T ss_pred HHHH
Confidence 6543
No 173
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.90 E-value=2.7e+02 Score=36.29 Aligned_cols=85 Identities=22% Similarity=0.241 Sum_probs=54.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc------CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-
Q 002856 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK------GKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS- 198 (873)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK------~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~- 198 (873)
+++.|-..=|...|++...+++.|.+++-.+..++ +|.--..-..|+..|+..+.-+.+=|..||..-+..|-
T Consensus 428 ~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~n 507 (1200)
T KOG0964|consen 428 KEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVAN 507 (1200)
T ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 45566666777888888888888888776653221 11000012346777788888888888888888777663
Q ss_pred -hhhhhhhhhHHH
Q 002856 199 -PEQVNDVKDLLE 210 (873)
Q Consensus 199 -pe~V~~ikddie 210 (873)
-+-|.+|.+++.
T Consensus 508 Gi~~v~~I~e~~k 520 (1200)
T KOG0964|consen 508 GIDSVRKIKEELK 520 (1200)
T ss_pred hhHHHHHHHHHhc
Confidence 345555555554
No 174
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=57.49 E-value=1.6e+02 Score=32.22 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=53.4
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHH
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQA 83 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n-~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~ 83 (873)
.-|+.||+.=||+.-+.+-.|-.--.--.+... ...-=+|=+-|++|++.++..+.+++.-...-+-+ .+-|-+.
T Consensus 39 ~~L~~eiE~~Lk~KC~~Lls~~~p~~~~~s~~l~~ak~~~L~~~l~~ek~~~~~~k~~~~e~~~~l~~q----~~~y~~v 114 (238)
T PF14735_consen 39 QRLPREIEERLKKKCFSLLSYHQPDSESSSEGLKAAKSWQLPELLREEKQRLEKEKAQLRELLVLLERQ----FATYYQV 114 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccccchhhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 458899999999998888776532221111111 22345788899999999999999888655332211 2334445
Q ss_pred HHHHHHHHHHHHHH
Q 002856 84 LVDARKLIEREMER 97 (873)
Q Consensus 84 L~e~Rk~IE~~MEr 97 (873)
|..+=.+.++=.++
T Consensus 115 L~~cl~~L~~li~~ 128 (238)
T PF14735_consen 115 LLQCLQLLQKLIEK 128 (238)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444443333
No 175
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=57.28 E-value=65 Score=42.13 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 133 DWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 133 ~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
.=+...+.+|+.+|..++...+.+
T Consensus 619 ~~~~e~~~~l~~~i~sL~~~~~~~ 642 (1317)
T KOG0612|consen 619 TEISEIIAELKEEISSLEETLKAG 642 (1317)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhh
Confidence 344555666666666666665554
No 176
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=57.09 E-value=1.1e+02 Score=41.05 Aligned_cols=109 Identities=26% Similarity=0.313 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCC
Q 002856 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSS-EIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQP 119 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~-eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~ 119 (873)
|+.+-..|.+++.+|.-.-.=|+.++.+. .|..++ +-.-...|.+....+|+...+..+.+....+......
T Consensus 997 ~~~~l~~l~~~~~~l~~~~rFI~~vi~~~i~i~~~~-------k~~l~~~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1388)
T PTZ00108 997 KEYLLGKLERELARLSNKVRFIKHVINGELVITNAK-------KKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEE 1069 (1388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCeeEEccCC-------HHHHHHHHHHcCCCccchhhhhccccccccccccccc
Confidence 56666677777777776666666666553 343444 1111122333334555554433333333222222211
Q ss_pred CCCchHHhH-------HHHHHHH---------HHHHHHHHHHHHHHHHHHhhhh
Q 002856 120 KTDPKEKAK-------SETRDWL---------NNLVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 120 k~Dp~ekek-------~E~~~wL---------~~~IdeL~~QiE~~EaE~E~Ls 157 (873)
. +..+.+- ...-+|| .+-|+.|.+|++..+.|++.|.
T Consensus 1070 ~-~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~e~v~kL~~e~~~~~~e~~~L~ 1122 (1388)
T PTZ00108 1070 D-DEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELEKLK 1122 (1388)
T ss_pred c-cccccccccccccchhhhHHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1100000 0135565 5679999999999999999983
No 177
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=56.93 E-value=75 Score=36.27 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002856 46 ADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTK 108 (873)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtK 108 (873)
..+++++|+|+.+.+-||.-..+..-++++ .+.+.++.|.++=-.|.++|....-|
T Consensus 39 ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~-------~i~~L~~~Ik~r~~~l~DmEa~LPkk 94 (330)
T PF07851_consen 39 SSISHQKKRLKELKKSLKRCKKSLSAEERE-------LIEKLEEDIKERRCQLFDMEAFLPKK 94 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHH-------HHHHHHHHHHHHHhhHHHHHhhCCCC
Confidence 456777777888888777776554334444 77788888888888888888665333
No 178
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=56.66 E-value=3.2e+02 Score=38.87 Aligned_cols=62 Identities=21% Similarity=0.396 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCC---CCCcc-CCccccccCCCCCcc
Q 002856 177 RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD---DFEEF-SDVDELYHLLPLDKV 238 (873)
Q Consensus 177 rhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~nqd---df~ef-~dde~iYd~L~Ld~~ 238 (873)
.|.--|..++.----|..+.-+...|++||..|..||..-+. |...+ .+-..+|+-|-+...
T Consensus 1295 ~~~~~I~~i~ekS~kl~~~~s~~s~i~~IKk~lq~nlq~a~~~nn~I~~~L~~Ikn~~~iL~snn~ 1360 (2757)
T TIGR01612 1295 KHDENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNILKLNKI 1360 (2757)
T ss_pred hhHHHHHHHHHhhHHhhhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHccH
Confidence 344445555422233455566668999999999999986543 11111 123456666655543
No 179
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=56.56 E-value=99 Score=27.77 Aligned_cols=40 Identities=30% Similarity=0.392 Sum_probs=28.3
Q ss_pred hHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 58 YRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKET 105 (873)
Q Consensus 58 ~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~ 105 (873)
+|.|+..|.+-.+ .+-.+..-+|..||.=+.|+|.+|.++
T Consensus 26 Lr~q~~~~~~ER~--------~L~ekne~Ar~rvEamI~RLk~leq~~ 65 (65)
T TIGR02449 26 LRAQEKTWREERA--------QLLEKNEQARQKVEAMITRLKALEQHT 65 (65)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 4556666655432 222367789999999999999999753
No 180
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=56.45 E-value=66 Score=35.72 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=3.3
Q ss_pred cccccCC
Q 002856 111 SKEGLGQ 117 (873)
Q Consensus 111 SkEGL~~ 117 (873)
-++|+..
T Consensus 188 ~~~g~is 194 (423)
T TIGR01843 188 KEKGLVS 194 (423)
T ss_pred HHcCCCC
Confidence 3445543
No 181
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.40 E-value=2e+02 Score=34.21 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 002856 41 KEKFEADLKKEIKKLQRYRDQIK 63 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIK 63 (873)
-|||++++.|--.-|--+|+||+
T Consensus 327 ~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 327 ADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 182
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=55.72 E-value=3.5e+02 Score=31.36 Aligned_cols=41 Identities=7% Similarity=0.210 Sum_probs=18.8
Q ss_pred HhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHH
Q 002856 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62 (873)
Q Consensus 14 ~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQI 62 (873)
++..+.+-.+.+|++..++.. .+..-|...-.+|++++..+
T Consensus 258 ~~~~~~e~~q~Ld~l~~rL~~--------a~~~~L~~~~~~L~~L~~rL 298 (438)
T PRK00286 258 AVPDRAELLQRLQQLQQRLAR--------AMRRRLEQKRQRLDQLARRL 298 (438)
T ss_pred hCccHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhh
Confidence 333444445555555555522 23333444444555544444
No 183
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=54.55 E-value=1.5e+02 Score=30.34 Aligned_cols=124 Identities=18% Similarity=0.168 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC
Q 002856 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k 120 (873)
++|=+.+++-|++|.+.-.+.+-+=|. .|.++|..++..|.-+- .-|++.
T Consensus 14 ~~k~~e~a~~el~k~~~~~~~~~~qL~---------------~l~~y~~ey~q~~~~k~------------~~G~s~--- 63 (148)
T COG2882 14 AKKEEEEAAIELSKIRSEKENAEEQLK---------------MLSGYRNEYEQNLNEKL------------KSGVSA--- 63 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH------------hccccH---
Confidence 777788888888888887777655442 68889999998887641 123322
Q ss_pred CCchHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 002856 121 TDPKEK-AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS 198 (873)
Q Consensus 121 ~Dp~ek-ek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~ 198 (873)
.+- --..-...|...|+....++..++..+|.... .--.+.-|+..++.+.+||+--....|.....-.||++.
T Consensus 64 ---~q~~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~-~w~ek~~~~k~~e~L~er~~~e~~~~e~~~Eqk~mDE~a 138 (148)
T COG2882 64 ---AQWQNYQQFISQLEVAIDQQQSQLSKLRKQVEQKRE-IWQEKQIELKALEKLKERQKTEFLLEENRREQKIMDELA 138 (148)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Confidence 222 23334555666777777777777777766421 001223456678888899988888888877766666553
No 184
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=54.26 E-value=5.3 Score=46.08 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=76.7
Q ss_pred HhHHHHHHHHHHhhcCCC---------chhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHH
Q 002856 20 EGVDVFDSIWNKVYDTDN---------ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKL 90 (873)
Q Consensus 20 EGve~Fd~i~~K~~~a~n---------~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~ 90 (873)
|++-.=+.||+++-..-- .+-=+++-.||++.|+| .+++.-+.
T Consensus 75 g~l~~n~~iw~~~~ew~y~~~~~~~v~s~~l~~f~~~~~~li~k----------------------------~il~~f~k 126 (420)
T PTZ00473 75 GDLKKNDDIWKDFVEWFYNKQEKFDVFSNHLESFNYDFEYLIQK----------------------------NILKNFNK 126 (420)
T ss_pred ccccchhHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHH----------------------------HhhhhHhh
Confidence 555555666665543222 22256667777777754 45666677
Q ss_pred HHHHHHHHHHHHhhhccccccccccCCCCCC-CchHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcccCCCC-chh
Q 002856 91 IEREMERFKICEKETKTKAFSKEGLGQQPKT-DPKEKAKSETRDWLNNLVSELESQID-SFEAELEGLTVKKGKTR-PPR 167 (873)
Q Consensus 91 IE~~MErFK~vEKe~KtKafSkEGL~~~~k~-Dp~ekek~E~~~wL~~~IdeL~~QiE-~~EaE~E~Ls~KK~K~~-~~r 167 (873)
++.--|.++++|..||.=-|+.-.-.-.+.+ .+........|+|+++|||.-++=|+ ..... -+.... ..=
T Consensus 127 fk~~~~~~~e~e~ImKL~yFteNig~Ik~lm~~~~~~~y~s~C~fvn~CidIYrk~i~~~Cs~~------~~~~~s~st~ 200 (420)
T PTZ00473 127 FKKLYENNYELEDIMKLFYFTENVGDIKSLMGAPDNEHYASSCKFVNDCLDIYRKYKDEKCSGN------SYNTFRGSTI 200 (420)
T ss_pred cccccccchhHHHHHHHHHHHhhhHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCc------CCCCCCccHH
Confidence 7777788888999999877764322111122 34455667899999999999888773 32222 122211 222
Q ss_pred hHHHHHHHHHHHHHH
Q 002856 168 LTHLETSITRHKAHI 182 (873)
Q Consensus 168 ~~~le~~ierhk~Hi 182 (873)
-.+|..+.+..+.|+
T Consensus 201 C~EL~~F~D~Yd~~m 215 (420)
T PTZ00473 201 CNELNNFFDKYKEHL 215 (420)
T ss_pred HHHHHHHHHHHHhhc
Confidence 345666666666554
No 185
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=53.85 E-value=36 Score=32.62 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=40.4
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHh-HHHHHHhhcc
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRY-RDQIKTWIQS 68 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~-RDQIKtW~~s 68 (873)
..|...|-.|.+|+..-+.+++|+.-+-..=+||| ++-+|+||.-+- =-+||.|+-+
T Consensus 21 k~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~reR---e~dee~k~~n~Knir~~KmwilG 78 (98)
T PF11166_consen 21 KTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRER---EEDEENKKKNDKNIRDIKMWILG 78 (98)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHH
Confidence 36788899999999999999999966544445553 455555555433 3468999754
No 186
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=53.40 E-value=1.2e+02 Score=36.90 Aligned_cols=28 Identities=11% Similarity=0.434 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAE 152 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE 152 (873)
..-|.+...|...-|.+++.+.+..-.+
T Consensus 263 ~~nR~diE~~Y~~kI~~i~~~~~~~~~~ 290 (546)
T KOG0977|consen 263 RQNRKDIESWYKRKIQEIRTSAERANVE 290 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhccccch
Confidence 3567778889999999888665544433
No 187
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=53.04 E-value=2.1e+02 Score=36.65 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cCC----CCchhhHHHHHHHHHH-HHHHHHHHHHHHhhhCCCC
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLTVK--KGK----TRPPRLTHLETSITRH-KAHIMKLELILRLLDNDEL 197 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls~K--K~K----~~~~r~~~le~~ierh-k~Hi~kLE~lLRlL~N~~l 197 (873)
...=|.++|++|.++-+.+|+-.|++..+ +-| ....++++|+..+..| .-|...++.+..+|.+-..
T Consensus 467 ~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~ 540 (980)
T KOG0980|consen 467 ENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDR 540 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 33456677777777777766666665321 111 2245677777766443 5677777777777766543
No 188
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=52.84 E-value=64 Score=35.30 Aligned_cols=82 Identities=20% Similarity=0.177 Sum_probs=55.7
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHh----HHHHHHhhccccccccccchhhHH
Q 002856 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRY----RDQIKTWIQSSEIKDKKVSASYEQ 82 (873)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~----RDQIKtW~~s~eIKDK~~~~~~~~ 82 (873)
-+.||||+..|+.-.-+.|....+++... +.+|+.+++.-.+++|++ -+.+|.+|..-----..+-.++..
T Consensus 155 t~k~leK~~~k~~ka~~~Y~~~v~~l~~~-----~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~ 229 (269)
T cd07673 155 TQREIEKAAVKSKKATESYKLYVEKYALA-----KADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIHIQIGQ 229 (269)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 46799999999988888888888888643 559999999999999876 356777665431111112233444
Q ss_pred HHHHHHHHHHH
Q 002856 83 ALVDARKLIER 93 (873)
Q Consensus 83 ~L~e~Rk~IE~ 93 (873)
...+-|+.||.
T Consensus 230 ~~e~ir~~le~ 240 (269)
T cd07673 230 VHEEFINNMAN 240 (269)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
No 189
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=52.60 E-value=3.3e+02 Score=29.32 Aligned_cols=30 Identities=10% Similarity=0.198 Sum_probs=24.5
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhh
Q 002856 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVY 33 (873)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~ 33 (873)
.+.|..+|+++-+.+.++......+..++.
T Consensus 79 ~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~ 108 (296)
T PF13949_consen 79 NASLRKELQKYREYLEQASESDSQLRSKLE 108 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 467888888888888888888888887775
No 190
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=52.58 E-value=3.6e+02 Score=35.18 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCC
Q 002856 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQ 117 (873)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~ 117 (873)
..|||++..++.+.|++--+.|.|-=.|+-..--|.|. +.-....+.-++++..|-+|.+-=+.+
T Consensus 705 ~~qkee~~~~~~~~I~~~~~~~~~~~~~~~~~~~k~~e---~~i~~~~~~~~~~~s~~~~iea~~~i~------------ 769 (1072)
T KOG0979|consen 705 DRQEEEYAASEAKKILDTEDMRIQSIRWHLELTDKHKE---IGIKEKNESSYMARSNKNNIEAERKIE------------ 769 (1072)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHH------------
Confidence 66899999999999999999999999998776544443 111234444455555554432111111
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 118 QPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 118 ~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
.-.....|++.+-+.|..+++....+++..
T Consensus 770 ---------~~e~~i~~~~~~~~~lk~a~~~~k~~a~~~ 799 (1072)
T KOG0979|consen 770 ---------KLEDNISFLEAREDLLKTALEDKKKEAAEK 799 (1072)
T ss_pred ---------HHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112244566666666666666666665544
No 191
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.27 E-value=2.5e+02 Score=30.73 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=28.7
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhH
Q 002856 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYR 59 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~R 59 (873)
.+=.+.+||.+....||..-. .+==++|+.-|-++||+.|+.|
T Consensus 111 ~~g~a~~kIa~ar~~~D~~I~-------~~Fl~pL~~~L~~d~k~i~k~R 153 (242)
T cd07600 111 KYSDAEEKIAEARLEQDQLIQ-------KEFNAKLRETLNTSFQKAHKAR 153 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777776543 2224577777777778777777
No 192
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=51.98 E-value=2.2e+02 Score=29.59 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=38.8
Q ss_pred HhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHH
Q 002856 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIER 93 (873)
Q Consensus 14 ~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~ 93 (873)
+.-.|-+=...|+.+|+.+..+-+...||+ ||+-|.+|| ++|..+...-+ .+-..|.+.|..+..
T Consensus 78 ~~~~I~~Y~~~f~syY~~L~~~id~~~~~~----~~~~i~~L~---~~i~~~q~~~~--------~~i~~L~~f~~~l~~ 142 (184)
T PF05791_consen 78 LNQDIINYNTTFQSYYDTLVEAIDQKDKED----LKEIIEDLQ---DQIQKNQDKVQ--------ALINELNDFKDKLQK 142 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-HHH----HHHHHHHHH---HHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcccHHH----HHHHHHHHH---HHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 333344444556888887777764444554 445555553 45544433211 122356667777766
Q ss_pred HHHHHHHH
Q 002856 94 EMERFKIC 101 (873)
Q Consensus 94 ~MErFK~v 101 (873)
.-..||..
T Consensus 143 D~~~l~~~ 150 (184)
T PF05791_consen 143 DSRNLKTD 150 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
No 193
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=51.77 E-value=66 Score=39.41 Aligned_cols=146 Identities=23% Similarity=0.300 Sum_probs=68.2
Q ss_pred cCCCchhHHHHHHHHHH------HHHHHHHh-HHHHHHhhccccccccccchhhHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 002856 34 DTDNANQKEKFEADLKK------EIKKLQRY-RDQIKTWIQSSEIKDKKVSASYEQALVDA-RKLIEREMERFKICEKET 105 (873)
Q Consensus 34 ~a~n~nQKEKlE~DLKK------EIKKLQR~-RDQIKtW~~s~eIKDK~~~~~~~~~L~e~-Rk~IE~~MErFK~vEKe~ 105 (873)
...|+.||+-|-+-+|. -+.++-|. -+-++ |..-+.||.-= +....|.++ ++.+|+.- ++|-
T Consensus 337 ~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~-~~d~~rika~V---IrG~~l~eal~~~~e~~~------p~e~ 406 (652)
T COG2433 337 SVSDDHERDALAAAYKAYLAYKPKLEKVERKLPELGI-WKDVERIKALV---IRGYPLAEALSKVKEEER------PREK 406 (652)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhHHHHHHHe---ecCCcHHHHHHHHHhhhc------cccc
Confidence 56678899988887653 22233222 22334 78888887532 222244443 33333332 2222
Q ss_pred ccc--cccccccCCCC---CCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----ccCCC-----CchhhHHH
Q 002856 106 KTK--AFSKEGLGQQP---KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKGKT-----RPPRLTHL 171 (873)
Q Consensus 106 KtK--afSkEGL~~~~---k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~----KK~K~-----~~~r~~~l 171 (873)
.-+ .+.-++-.... ++...-+.-.+-..=|+.-|++|++.||.||++++.+.. |.+|. ...|+..|
T Consensus 407 ~~~~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L 486 (652)
T COG2433 407 EGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERL 486 (652)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 222 11111111000 001111222233445666667777777777777776631 22221 23466777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002856 172 ETSITRHKAHIMKLELIL 189 (873)
Q Consensus 172 e~~ierhk~Hi~kLE~lL 189 (873)
+..++.-+--|+.||.=|
T Consensus 487 ~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 487 EKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666655555555554433
No 194
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=51.77 E-value=34 Score=33.55 Aligned_cols=67 Identities=22% Similarity=0.355 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhh
Q 002856 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQV 202 (873)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~-pe~V 202 (873)
.|..-||.+.+ .|.+.+..++|.|...-- ..|+++++..+++|-..|..+=.|+|-++++-|| |..+
T Consensus 14 ~el~P~l~d~~----~~~r~~~n~~e~L~~qed---k~~l~e~e~q~k~~l~~i~e~G~iird~d~glVDFpa~~ 81 (123)
T COG4911 14 RELLPWLRDRL----IQLRKIKNEIELLLVQED---KYALQEYESQTKKILDEIIEKGIIIRDIDIGLVDFPAII 81 (123)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHHHHcCceeeccccccccchhhh
Confidence 34555666554 455667788888854322 2478899999988888888888999999999998 5443
No 195
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=51.74 E-value=25 Score=32.05 Aligned_cols=58 Identities=19% Similarity=0.388 Sum_probs=34.4
Q ss_pred chhhhHHHHhhhHHHhHHHHHHH-HHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHH
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSI-WNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i-~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIK 63 (873)
+++.++-.++|.+.+.|..+..+ .....+...--++|||-.|++..++.+|+.-..+.
T Consensus 37 ~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~ 95 (102)
T PF14523_consen 37 QLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRYA 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666655555544 11111111224699999999999999998766553
No 196
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=51.52 E-value=63 Score=30.33 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=38.8
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCch-hHHHHHHHHHH
Q 002856 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNAN-QKEKFEADLKK 50 (873)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~n-QKEKlE~DLKK 50 (873)
++.|||++=+|+.....--|.|-.|+...+-+. +|+.+|.++.-
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~ 47 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNE 47 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHH
Confidence 578999999999999999999999999998766 89999966543
No 197
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=51.49 E-value=1.2e+02 Score=32.50 Aligned_cols=88 Identities=15% Similarity=0.265 Sum_probs=71.6
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHH
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDAR 88 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~R 88 (873)
.||-+..|||.-=.-.||..-.|+..+... ...+|.+|+.--.|.-+..|..+.=+. .|+++. ...+...+
T Consensus 114 k~i~k~RKkLe~rRLdyD~~ksk~~kak~~--~~~~eeElr~Ae~kfees~E~a~~~M~--~i~~~e-----~e~~~~L~ 184 (215)
T cd07593 114 KEYHSARKKLESRRLAYDAALTKSQKAKKE--DSRLEEELRRAKAKYEESSEDVEARMV--AIKESE-----ADQYRDLT 184 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc--chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcC-----hHHHHHHH
Confidence 478888999999999999999999888544 357888888888899999999888777 466653 23888999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002856 89 KLIEREMERFKICEKET 105 (873)
Q Consensus 89 k~IE~~MErFK~vEKe~ 105 (873)
.+||.+|+-|+.|=..+
T Consensus 185 ~lv~AQl~Yh~q~~e~L 201 (215)
T cd07593 185 DLLDAELDYHQQSLDVL 201 (215)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999885443
No 198
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=51.14 E-value=10 Score=32.77 Aligned_cols=51 Identities=18% Similarity=0.393 Sum_probs=27.6
Q ss_pred HHHHHHhHHHHHHhhcccccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 002856 52 IKKLQRYRDQIKTWIQSSEIK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTKA 109 (873)
Q Consensus 52 IKKLQR~RDQIKtW~~s~eIK-DK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKa 109 (873)
..++++--+.+..||...+-+ ... .....-.-|+..|++|+.++++++.+.
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~-------~~~~~~~~~~~~~~~~~~~~~ei~~~~ 54 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSS-------EPGSDLEELEEQLKKHKELQEEIESRQ 54 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSC-------THSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCCHHHHHHHHHHHhhhhhHHHHHH
Confidence 344455555666666655332 111 112223456777778888887776543
No 199
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=51.13 E-value=2.6e+02 Score=29.43 Aligned_cols=98 Identities=22% Similarity=0.407 Sum_probs=0.0
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCC-----chhHHHHHH----------HHHHHHHHHHHhHHHHHHhhcccccccc
Q 002856 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDN-----ANQKEKFEA----------DLKKEIKKLQRYRDQIKTWIQSSEIKDK 74 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~~K~~~a~n-----~nQKEKlE~----------DLKKEIKKLQR~RDQIKtW~~s~eIKDK 74 (873)
|.-|.+--|..-+..=..+|.-++++.. ..+++||.+ .|++||+.+++--++.+.
T Consensus 95 ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~---------- 164 (216)
T cd07627 95 EYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKK---------- 164 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHH----------
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHH-----HHHHHHHHHHHHHHHHHHH
Q 002856 75 KVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE-----TRDWLNNLVSELESQIDSF 149 (873)
Q Consensus 75 ~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E-----~~~wL~~~IdeL~~QiE~~ 149 (873)
...+.-+.|-.+|+|| +++|.. ...|+...|+.-+.-||.+
T Consensus 165 --------~~e~is~~~k~El~rF--------------------------~~~r~~dfk~~l~~~~e~~ie~~k~~ie~W 210 (216)
T cd07627 165 --------EFEEVSELIKSELERF--------------------------ERERVEDFRNSVEIYLESAIESQKELIELW 210 (216)
T ss_pred --------HHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 002856 150 EA 151 (873)
Q Consensus 150 Ea 151 (873)
|.
T Consensus 211 e~ 212 (216)
T cd07627 211 ET 212 (216)
T ss_pred HH
No 200
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=50.98 E-value=4.4e+02 Score=31.40 Aligned_cols=146 Identities=14% Similarity=0.259 Sum_probs=76.5
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHH
Q 002856 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARK 89 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk 89 (873)
.+..+=|+|+ ++|+--.--+..-=|-.-|+|.|+..+||-..+-+..+.+|. .+. + .+.|++.
T Consensus 203 q~l~le~~l~---eEy~rkm~aL~~~c~lE~r~k~e~~~qre~a~~~eaeel~k~-~~e------~-------~a~e~~~ 265 (429)
T PF12297_consen 203 QFLGLEKRLQ---EEYDRKMVALTAECNLETRKKMEAQHQREMAEMEEAEELLKH-ASE------R-------SAAECSS 265 (429)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccH------h-------hHHHHHH
Confidence 3333334444 345554444444445566999999999999999988888886 221 2 5666666
Q ss_pred HHHH--HHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcccCCCCc
Q 002856 90 LIER--EMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL--TVKKGKTRP 165 (873)
Q Consensus 90 ~IE~--~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L--s~KK~K~~~ 165 (873)
+++. .||+ +-=.| -|..... ..-+|.+.+..-| +.+|..+-..+.| ..+||.-+
T Consensus 266 LL~~lH~leq------e~L~~-----~L~l~qE-E~~aKa~Rqla~~---------~R~eLh~if~~qi~~ai~~GeL~- 323 (429)
T PF12297_consen 266 LLRKLHGLEQ------EHLRR-----SLLLQQE-EDFAKARRQLAVF---------RRVELHEIFFEQIKSAIFKGELK- 323 (429)
T ss_pred HHHHHHhhhH------HHHHH-----HHHHHHH-HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhCCCC-
Confidence 5543 2222 11000 0110000 0012333333333 3333333333333 23555433
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 002856 166 PRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (873)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~ 196 (873)
.+..+..+..|.-+.+.+|.||+.+...+
T Consensus 324 --~e~Ak~Ll~~y~~~Q~~vEelMD~~qA~k 352 (429)
T PF12297_consen 324 --PEAAKSLLQDYSKIQENVEELMDFFQANK 352 (429)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 24566677788888888888887665443
No 201
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=50.28 E-value=5e+02 Score=31.25 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002856 129 SETRDWLNNLVSELESQIDSFEA 151 (873)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~Ea 151 (873)
.++..=|.++..+|+...+.++.
T Consensus 276 ~~~~~~l~d~~~~l~~~~~~l~~ 298 (563)
T TIGR00634 276 GNALTEVEEATRELQNYLDELEF 298 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 34556667777777776555543
No 202
>PF13166 AAA_13: AAA domain
Probab=50.22 E-value=5.5e+02 Score=31.25 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002856 171 LETSITRHKAHIMKLEL 187 (873)
Q Consensus 171 le~~ierhk~Hi~kLE~ 187 (873)
++..+...+-+|..|+.
T Consensus 436 ~~~~~~~~~~~i~~l~~ 452 (712)
T PF13166_consen 436 AKEEIKKIEKEIKELEA 452 (712)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 203
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=50.20 E-value=4.3e+02 Score=31.80 Aligned_cols=17 Identities=12% Similarity=0.352 Sum_probs=8.8
Q ss_pred HHhHHHHHHHHHHhhcC
Q 002856 19 QEGVDVFDSIWNKVYDT 35 (873)
Q Consensus 19 ~EGve~Fd~i~~K~~~a 35 (873)
.+-...|...|.++...
T Consensus 157 ~~~~~~~~~~~~~~~~~ 173 (563)
T TIGR00634 157 NEKVKAYRELYQAWLKA 173 (563)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34455555555555443
No 204
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=49.93 E-value=4.2e+02 Score=30.11 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhhCCC-CChhhhhhhh
Q 002856 182 IMKLELILRLLDNDE-LSPEQVNDVK 206 (873)
Q Consensus 182 i~kLE~lLRlL~N~~-l~pe~V~~ik 206 (873)
..+.+.|...|.+|. |+.|++.-|+
T Consensus 264 kera~ei~EKfk~GekLt~EelllLq 289 (294)
T COG1340 264 KERAEEIYEKFKRGEKLTTEELLLLQ 289 (294)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 345666777777766 8888877665
No 205
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=49.93 E-value=2.6 Score=50.14 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=40.7
Q ss_pred chhhHHHHHHHHHHHHHHHH-HHHHHHhhhCCC-CC--hhhhhhhhhHHHHHHHhCCCC
Q 002856 165 PPRLTHLETSITRHKAHIMK-LELILRLLDNDE-LS--PEQVNDVKDLLEDYVERNQDD 219 (873)
Q Consensus 165 ~~r~~~le~~ierhk~Hi~k-LE~lLRlL~N~~-l~--pe~V~~ikddieyYve~nqdd 219 (873)
+.|++.|++.++.+.--|-- =..||=+|+|+. || ...|..|-|-|..-|..|..|
T Consensus 402 e~Ri~~l~~~v~d~~~d~wsynaELlVlleN~~tld~~Ds~~~~L~ekvk~qL~~na~d 460 (550)
T PF00509_consen 402 EKRIDNLEKKVDDKIADVWSYNAELLVLLENQRTLDLHDSNVNNLYEKVKRQLRENAED 460 (550)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGEEE
T ss_pred HHHHHHHHHhhhccchhhhcccHHHHHHhccccchhhhHHHHHHHHHHHHHHHhccchh
Confidence 46888898888776554432 224566888887 55 778889999999999988763
No 206
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=49.59 E-value=18 Score=32.45 Aligned_cols=20 Identities=50% Similarity=0.538 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhHHHHHHh
Q 002856 46 ADLKKEIKKLQRYRDQIKTW 65 (873)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW 65 (873)
.+||||||||+|.=-|+|.=
T Consensus 5 ~eLk~evkKL~~~A~~~kmd 24 (66)
T PF05082_consen 5 EELKKEVKKLNRKATQAKMD 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57999999999988888863
No 207
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=49.35 E-value=86 Score=38.16 Aligned_cols=43 Identities=28% Similarity=0.258 Sum_probs=25.0
Q ss_pred hHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHH
Q 002856 17 KVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQ 61 (873)
Q Consensus 17 KV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQ 61 (873)
++.| .+.+|+--.+++.--+.--.+- |..|+.|+|+=+|++.|
T Consensus 249 ~~l~-~d~~d~~~~~~qlP~~evl~~~-e~~l~Ae~kqekRlq~~ 291 (645)
T KOG0681|consen 249 KILE-MDYYDENRNYFQLPYTEVLAEV-ELALTAEKKQEKRLQEQ 291 (645)
T ss_pred HHhh-hhhhhccceEEecccccccchh-hhhccHHHHHHHHHHHH
Confidence 3444 5566655555554333222222 46678888887898888
No 208
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=49.35 E-value=2.8e+02 Score=27.66 Aligned_cols=40 Identities=18% Similarity=0.424 Sum_probs=32.6
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Q 002856 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ 56 (873)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQ 56 (873)
+|.+++++..|++.-+++-+=+ .+|-.+|.+--|.+.||-
T Consensus 2 ~~~l~~~~~~g~~~~~e~~~f~------keRa~iE~eYak~L~kLa 41 (191)
T cd07610 2 FELLEKRTELGLDLLKDLREFL------KKRAAIEEEYAKNLQKLA 41 (191)
T ss_pred chHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 4788999999999999987777 457788888887777773
No 209
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=49.13 E-value=75 Score=38.78 Aligned_cols=55 Identities=11% Similarity=0.378 Sum_probs=38.1
Q ss_pred HHHHHHH------HHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 002856 41 KEKFEAD------LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF 98 (873)
Q Consensus 41 KEKlE~D------LKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErF 98 (873)
|++|+.+ .+.|.++|...=++...|+..++-.++. .|.++|.+.+++++.-+.|+
T Consensus 552 r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~---~~~~kl~eL~~~~~pi~~r~ 612 (653)
T PTZ00009 552 KNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKE---EFEHKQKEVESVCNPIMTKM 612 (653)
T ss_pred HHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHH---HHHHHHHHHHHHHHHHHHHH
Confidence 6777543 3455667777778888899866544443 67788888888888766664
No 210
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=49.11 E-value=1.3e+02 Score=28.57 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 002856 83 ALVDARKLIEREMERFKICEKETK 106 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEKe~K 106 (873)
.|..-|.-|+..|+.|+.-|++.+
T Consensus 15 ~l~~kr~e~~~~~~~~~~~e~~L~ 38 (126)
T PF13863_consen 15 ALDTKREEIERREEQLKQREEELE 38 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666555543
No 211
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=49.11 E-value=2e+02 Score=32.88 Aligned_cols=53 Identities=28% Similarity=0.346 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChh
Q 002856 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPE 200 (873)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe 200 (873)
+..--|+.-|++|++++-.+|.|++. .-.+.+|-.+|-.+|--+|+...||.+
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~~------------------~~k~L~faqekn~LlqslLddaniD~~ 227 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELEI------------------TKKDLKFAQEKNALLQSLLDDANIDSE 227 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhhhcccHH
Confidence 44556677777777777777777544 445566667776777777887778764
No 212
>PF14282 FlxA: FlxA-like protein
Probab=49.10 E-value=31 Score=32.89 Aligned_cols=56 Identities=18% Similarity=0.343 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccC---CCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002856 136 NNLVSELESQIDSFEAELEGLTVKKG---KTRPPRLTHLETSITRHKAHIMKLELILRL 191 (873)
Q Consensus 136 ~~~IdeL~~QiE~~EaE~E~Ls~KK~---K~~~~r~~~le~~ierhk~Hi~kLE~lLRl 191 (873)
...|..|++||..+..+|..|...+. +.+..++..|+..|.-..-+|..|..-..-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999998865322 223456677777777777777777655443
No 213
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=49.08 E-value=5.3e+02 Score=33.85 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002856 82 QALVDARKLIEREMERFKICEKETKT 107 (873)
Q Consensus 82 ~~L~e~Rk~IE~~MErFK~vEKe~Kt 107 (873)
..+.+++.--+..|+..|+++++-|-
T Consensus 248 ~ey~~~k~~~~r~k~~~r~l~k~~~p 273 (1072)
T KOG0979|consen 248 REYNAYKQAKDRAKKELRKLEKEIKP 273 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 36777888888889999999988653
No 214
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=48.65 E-value=4.9e+02 Score=30.19 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCh-hhhhhhhh
Q 002856 172 ETSITRHKAHIMKLELILRLLDNDELSP-EQVNDVKD 207 (873)
Q Consensus 172 e~~ierhk~Hi~kLE~lLRlL~N~~l~p-e~V~~ikd 207 (873)
...+++..-.|.+||.|.|.|.-++-++ ..+.+++.
T Consensus 291 ~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~ 327 (391)
T KOG1850|consen 291 DKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEA 327 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 3455777888999999999999888663 44444443
No 215
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=48.65 E-value=96 Score=30.88 Aligned_cols=87 Identities=18% Similarity=0.251 Sum_probs=55.7
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHH-HHH
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQAL-VDA 87 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L-~e~ 87 (873)
.+|.+..||...=...||....|+........+..-|.+|.+--.++..++++++..+..= -++. ..-| .-.
T Consensus 131 ~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~l--~~~~-----~~~l~~~l 203 (229)
T PF03114_consen 131 KEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPKL--FAKR-----QDILEPCL 203 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCH-----HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-----HHHHHHHH
Confidence 4677777888888888888888887766433332227777777788888888888877643 2211 0123 444
Q ss_pred HHHHHHHHHHHHHHH
Q 002856 88 RKLIEREMERFKICE 102 (873)
Q Consensus 88 Rk~IE~~MErFK~vE 102 (873)
+.+|+.++.=|+.|-
T Consensus 204 ~~~i~~q~~~~~~~~ 218 (229)
T PF03114_consen 204 QSFIEAQLQYFQQLY 218 (229)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666665543
No 216
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=48.36 E-value=2.3e+02 Score=31.58 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls 157 (873)
...+....|++|..+|..|++|++.|+
T Consensus 194 ei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 194 EIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888888888887774
No 217
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=48.32 E-value=3.3e+02 Score=28.50 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=6.0
Q ss_pred chhhhHHHHhhh
Q 002856 6 KLQGEIDRVLKK 17 (873)
Q Consensus 6 KLQ~EIDr~lKK 17 (873)
+||..+|+.|++
T Consensus 37 ~L~e~Ld~~L~~ 48 (189)
T PF10211_consen 37 QLQEWLDKMLQQ 48 (189)
T ss_pred HHHHHHHHHHHH
Confidence 345555555444
No 218
>PF15294 Leu_zip: Leucine zipper
Probab=48.25 E-value=3.7e+02 Score=30.31 Aligned_cols=132 Identities=17% Similarity=0.301 Sum_probs=64.8
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCC-chhHHHHHHHHHHHHH--------HHHHhHHHHHHhhccccccccccchh
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIK--------KLQRYRDQIKTWIQSSEIKDKKVSAS 79 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n-~nQKEKlE~DLKKEIK--------KLQR~RDQIKtW~~s~eIKDK~~~~~ 79 (873)
.|||.||+-+.+.+-. |+.|.--+-.+- .--+--+.+++..|++ =|+++=.|=-.|--.-. .|.
T Consensus 11 k~Vds~F~Dlk~srL~-e~t~T~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~-~di----- 83 (278)
T PF15294_consen 11 KEVDSCFQDLKSSRLR-EDTYTSDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQ-TDI----- 83 (278)
T ss_pred HHHHHhhhHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhc-ccH-----
Confidence 5788888876665433 333321110000 0001122333333333 25666777777843222 333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 80 YEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 80 ~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
.=+|+|.++|+ |++|-.-|=-...|.+.. .. ..|+.|.- +. -...-|+.-|+.|+.+++.+..-+-++
T Consensus 84 ---selEn~eLLe~-i~~~E~~~~~~~~~~~~~--~~-~~KL~pl~-e~-g~~~ll~kEi~rLq~EN~kLk~rl~~l 151 (278)
T PF15294_consen 84 ---SELENRELLEQ-IAEFEKQEFTSSFKPNQE--TS-KPKLEPLN-ES-GGSELLNKEIDRLQEENEKLKERLKSL 151 (278)
T ss_pred ---HHHHHHHHHHH-HHHHHHhhhcccCCcccc--cc-cccccccc-cc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24677888764 566654443333322211 11 22566632 21 234567777777777777777665554
No 219
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=48.04 E-value=1.1e+02 Score=32.51 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=13.2
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhh
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVY 33 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~ 33 (873)
||++.....++.|..--.-|+....++.
T Consensus 111 k~~k~~~~~~~~l~KaK~~Y~~~c~~~e 138 (236)
T cd07651 111 KLLKKKQDQEKYLEKAREKYEADCSKIN 138 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4444444444444444455554444443
No 220
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=47.95 E-value=2.1e+02 Score=35.45 Aligned_cols=48 Identities=17% Similarity=0.349 Sum_probs=38.5
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH
Q 002856 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR 57 (873)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR 57 (873)
-|+++...+.+.+-++.|++.+|.|-+=+ .-|-+.|-++++-...|++
T Consensus 9 ~~~~~d~~~~~~~~~q~gL~~le~~~~~~------~era~~ek~y~~~l~~l~~ 56 (640)
T KOG3565|consen 9 LRELKDAFKATEQSTQNGLDWLERIVQFL------KERADKEKEYEEKLRSLCK 56 (640)
T ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHHHh------cchhHHHHHHHHHHHHhhh
Confidence 46777888899999999999999987655 3366777788888888887
No 221
>smart00126 IL6 Interleukin-6 homologues. Family includes granulocyte colony-stimulating factor (G-CSF) and myelomonocytic growth factor (MGF). IL-6 is also known as B-cell stimulatory factor 2.
Probab=47.92 E-value=84 Score=32.35 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=36.0
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH-HHhHHHHHHhh
Q 002856 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKTWI 66 (873)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKL-QR~RDQIKtW~ 66 (873)
+.||.||..|+-+|..+++-+++.-. +-++..+. |-.-+|-| |.+|+++|.|-
T Consensus 53 e~CL~ri~~GL~~yq~~L~~l~~~f~-~~~~~v~~-l~~~~~~L~~~l~~k~k~~~ 106 (154)
T smart00126 53 EICLVKITAGLLEYQVYLEYLQNEFP-ENKENVDT-LQLDTKTLIQIIQQEMKDLG 106 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCc-cccccHHH-HHHHHHHHHHHHHHHhhCcC
Confidence 68999999999999999987764433 22444333 33334433 66778888885
No 222
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=47.66 E-value=49 Score=34.16 Aligned_cols=88 Identities=17% Similarity=0.238 Sum_probs=58.5
Q ss_pred HHHHhhhHHHhHHHH---HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHH
Q 002856 11 IDRVLKKVQEGVDVF---DSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDA 87 (873)
Q Consensus 11 IDr~lKKV~EGve~F---d~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~ 87 (873)
+-..++++..|++-| ++.-+++...-.-.|=+|.-..||+++|+|. .+++||-- -|.|.
T Consensus 34 ~~~~~~rl~~~m~~~~~~~~~~~a~~g~vd~~~L~~va~~~~~~lkrl~-----------~s~~kg~~-------ll~EL 95 (160)
T PF15005_consen 34 LQARAQRLLLEMEDFFFLPYAEDAFMGVVDEDTLDKVAWSFKNQLKRLT-----------DSDLKGEP-------LLKEL 95 (160)
T ss_pred HHHHHHHHHHHhhCccccccchhhhhhhccHHHHHHHHHHHHHHHHHHh-----------cCCcccch-------HHHHH
Confidence 344555666666544 2223355555556778888899999999876 78899865 56666
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccc-------ccCCCCCC
Q 002856 88 RKLIEREMERFKICEKETKTKAFSKE-------GLGQQPKT 121 (873)
Q Consensus 88 Rk~IE~~MErFK~vEKe~KtKafSkE-------GL~~~~k~ 121 (873)
+-+-+.+++.||.+ .|.|+++ |++.++-+
T Consensus 96 ~~~r~~~~~~lk~~-----lk~fq~~a~cp~~Cg~~~~~vi 131 (160)
T PF15005_consen 96 VWMRQNQKKELKKA-----LKQFQKKACCPNKCGLMLQTVI 131 (160)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHhcCchhcccccccee
Confidence 66667777777777 5567777 77665433
No 223
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=47.46 E-value=4.2e+02 Score=29.14 Aligned_cols=44 Identities=11% Similarity=0.308 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhh-CCC-CChhhhhhhhhHHHHHHHh
Q 002856 166 PRLTHLETSITRHKAHIMKLELILRLLD-NDE-LSPEQVNDVKDLLEDYVER 215 (873)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE~lLRlL~-N~~-l~pe~V~~ikddieyYve~ 215 (873)
.-.+.|.+.|+++-| ..++.+++.+. .-. .|.+ ++++++..|++
T Consensus 191 ~~~e~Lr~~iEkkL~--~d~~~~~~~~t~~~k~~d~e----~~~~~~~~i~r 236 (254)
T PF06798_consen 191 TSYERLREAIEKKLF--SDVKDLIKIITESSKTPDKE----QQRKIDEVIER 236 (254)
T ss_pred hhhHHHHHHHHHHHH--HHHHHHHHhcchhccCCCHH----HHHHHHHHHHH
Confidence 445667788888887 56788888776 333 3444 44445555543
No 224
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=46.96 E-value=2.1e+02 Score=25.38 Aligned_cols=59 Identities=22% Similarity=0.466 Sum_probs=40.3
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCch--hHHHHHHHHHHHHHHH-HHhHHHHHHhhcc
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNAN--QKEKFEADLKKEIKKL-QRYRDQIKTWIQS 68 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~n--QKEKlE~DLKKEIKKL-QR~RDQIKtW~~s 68 (873)
.||...+.+|.+-|+.+...+.++....... -+++++ +|-.||++| +.++..||.--..
T Consensus 10 ~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~-~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 10 QEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELD-ELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999888843 233333 333444433 5556666654443
No 225
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=46.77 E-value=3.7e+02 Score=30.42 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=9.8
Q ss_pred hhhhhhhhhHHHHHHH
Q 002856 199 PEQVNDVKDLLEDYVE 214 (873)
Q Consensus 199 pe~V~~ikddieyYve 214 (873)
.+-|..++..++.||.
T Consensus 322 ~~~~~~l~~~~~~fv~ 337 (339)
T cd09238 322 QEAVRRLKQECEDFVM 337 (339)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3455566777777764
No 226
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.62 E-value=74 Score=31.72 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhhhhhhhHH
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLL 209 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~-pe~V~~ikddi 209 (873)
++.=|.+.+..+.+|+|.+-..+..- +.+|...|++.-.+++....|.+.++++--+ -++|..|++||
T Consensus 37 Trr~m~~A~~~v~kql~~vs~~l~~t-----------KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv 105 (126)
T PF07889_consen 37 TRRSMSDAVASVSKQLEQVSESLSST-----------KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDV 105 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44557788888999998887776553 2356677777777777777777766543322 23334444444
Q ss_pred H
Q 002856 210 E 210 (873)
Q Consensus 210 e 210 (873)
+
T Consensus 106 ~ 106 (126)
T PF07889_consen 106 D 106 (126)
T ss_pred H
Confidence 4
No 227
>PRK10865 protein disaggregation chaperone; Provisional
Probab=46.46 E-value=4.3e+02 Score=33.71 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002856 46 ADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETK 106 (873)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~K 106 (873)
..|++.|..|++-.+.++. ..++..+. .|.+.++.|+...++|..++...|
T Consensus 413 ~rLer~l~~L~~E~e~l~~---e~~~~~~~-------~~~~l~~~l~~lq~e~~~L~eq~k 463 (857)
T PRK10865 413 DRLDRRIIQLKLEQQALMK---ESDEASKK-------RLDMLNEELSDKERQYSELEEEWK 463 (857)
T ss_pred HHHHHHHHHHHHHHHHHHh---hhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777766665532 11232222 566667777777777766666555
No 228
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=45.65 E-value=7.3e+02 Score=31.39 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=67.5
Q ss_pred HHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHH----HHHHHHhhhccccccccccCCCCCCCchHHh
Q 002856 52 IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREME----RFKICEKETKTKAFSKEGLGQQPKTDPKEKA 127 (873)
Q Consensus 52 IKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~ME----rFK~vEKe~KtKafSkEGL~~~~k~Dp~eke 127 (873)
-++++.+++||.+--+..+ .+...=+.+|.+|- .+--++++.++..=+.|-+.. .-.+
T Consensus 502 ~~ek~~l~~~i~~l~~~~~------------~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk------~~~e 563 (698)
T KOG0978|consen 502 REEKSKLEEQILTLKASVD------------KLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKK------KAQE 563 (698)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHH------HHHH
Confidence 4566777888877665543 44444455666653 344455565555555544432 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhh
Q 002856 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKD 207 (873)
Q Consensus 128 k~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikd 207 (873)
-..-.+||+-..+..+.+++.++..+..+.. .++.+.....|..--+.+|-..|+.+.+...-..-...+.+
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~--------ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~E 635 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELEL--------ELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAE 635 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHH
Confidence 2223445555555555555555544433210 11111112222233344555666666676663344445556
Q ss_pred HHHHHHH
Q 002856 208 LLEDYVE 214 (873)
Q Consensus 208 dieyYve 214 (873)
.|..|-+
T Consensus 636 Elk~yK~ 642 (698)
T KOG0978|consen 636 ELKEYKE 642 (698)
T ss_pred HHHHHHh
Confidence 6666654
No 229
>PF13514 AAA_27: AAA domain
Probab=45.62 E-value=5.2e+02 Score=33.78 Aligned_cols=24 Identities=8% Similarity=0.357 Sum_probs=13.9
Q ss_pred HHHHHHhHHHHHHhhccccccccc
Q 002856 52 IKKLQRYRDQIKTWIQSSEIKDKK 75 (873)
Q Consensus 52 IKKLQR~RDQIKtW~~s~eIKDK~ 75 (873)
-++|+.++.+|...+....+++..
T Consensus 821 ~~~l~~~~~~l~~L~~~a~~~~~e 844 (1111)
T PF13514_consen 821 EEELEELEAELAELLEQAGVEDEE 844 (1111)
T ss_pred HHHHHHHHHHHHHHHHhccCCCHH
Confidence 344455566666666666666543
No 230
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=45.54 E-value=5.7e+02 Score=31.90 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 002856 83 ALVDARKLIEREMERFKICEKETKTK 108 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEKe~KtK 108 (873)
.|.|+.+.|....+++.+++|..|..
T Consensus 146 ~l~e~~~rl~~~~~~~q~~~R~a~~~ 171 (632)
T PF14817_consen 146 ILREYTKRLQGQVEQLQDIQRKAKVE 171 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 78899999999999999999987765
No 231
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.38 E-value=7.3e+02 Score=32.52 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 132 RDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
.+=|+.-++.|...+|.+|.|+|-|
T Consensus 327 aesLQ~eve~lkEr~deletdlEIL 351 (1243)
T KOG0971|consen 327 AESLQQEVEALKERVDELETDLEIL 351 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666677777777777777666
No 232
>PF14182 YgaB: YgaB-like protein
Probab=45.31 E-value=1.1e+02 Score=28.52 Aligned_cols=31 Identities=16% Similarity=0.404 Sum_probs=21.5
Q ss_pred HHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHH
Q 002856 52 IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMER 97 (873)
Q Consensus 52 IKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MEr 97 (873)
.++|...|+.|.. +...|.+-++..|.++|.
T Consensus 39 ea~l~~i~~EI~~---------------mkk~Lk~Iq~~Fe~QTee 69 (79)
T PF14182_consen 39 EAELHSIQEEISQ---------------MKKELKEIQRVFEKQTEE 69 (79)
T ss_pred HHhHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Confidence 3566777776653 223788888888888875
No 233
>PRK09793 methyl-accepting protein IV; Provisional
Probab=45.29 E-value=1.6e+02 Score=34.60 Aligned_cols=65 Identities=9% Similarity=0.326 Sum_probs=52.3
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccc
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTD-NANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD 73 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~~a~-n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKD 73 (873)
.++++.+.++.+.++.++..|+++.... .......+-.+|++..+.+.+..+++..|+..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 146 (533)
T PRK09793 81 DDIKTLMTTARASLTQSTTLFKSFMAMTAGNEHVRALQKETEKSFARWHNDLEHQATWLESNQLSD 146 (533)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 4677889999999999999999998654 3344446677888889999999999999998877653
No 234
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=45.20 E-value=76 Score=37.04 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Q 002856 165 PPRLTHLETSITRHKAHIMKLELILR 190 (873)
Q Consensus 165 ~~r~~~le~~ierhk~Hi~kLE~lLR 190 (873)
.+|--++++.+|-.+-||.|||+.+-
T Consensus 345 yERaRdIqEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 345 YERARDIQEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999998765
No 235
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=44.84 E-value=63 Score=32.85 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=20.3
Q ss_pred HHHHHhhhCCCC--ChhhhhhhhhHHHHHHHhCCCCC
Q 002856 186 ELILRLLDNDEL--SPEQVNDVKDLLEDYVERNQDDF 220 (873)
Q Consensus 186 E~lLRlL~N~~l--~pe~V~~ikddieyYve~nqddf 220 (873)
..|+.+|+-+.| +.+.|..|.|-|+.+-+++..-|
T Consensus 100 ~av~allD~d~l~l~~dg~~Gldeqi~~lkes~~yLF 136 (155)
T PF06810_consen 100 KAVKALLDLDKLKLDDDGLKGLDEQIKALKESDPYLF 136 (155)
T ss_pred HHHHHhcCHHHeeeCCCccccHHHHHHHHHhcCchhc
Confidence 345555555553 45556667777777766554444
No 236
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=44.78 E-value=4.8e+02 Score=32.86 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=20.8
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 002856 159 KKGKTRPPRLTHLETSITRHKAHIMKLE 186 (873)
Q Consensus 159 KK~K~~~~r~~~le~~ierhk~Hi~kLE 186 (873)
+|+|....++++.+..+.||..-|.|+=
T Consensus 352 erkK~e~ke~ea~E~rkkr~~aei~Kff 379 (811)
T KOG4364|consen 352 ERKKLESKEVEAQELRKKRHEAEIGKFF 379 (811)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 3444455688889999999998888764
No 237
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=44.73 E-value=1.4e+02 Score=30.41 Aligned_cols=64 Identities=27% Similarity=0.525 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHH----HhHHHHHHhhcc-ccccc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 42 EKFEADLKKEIKKLQ----RYRDQIKTWIQS-SEIKD--KKVSASYEQALVDARKLIEREMERFKICEKET 105 (873)
Q Consensus 42 EKlE~DLKKEIKKLQ----R~RDQIKtW~~s-~eIKD--K~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~ 105 (873)
+.||.+||+.|+++. .+.+.|...+.. +||=. +-....+...+.+.|+.+++..|+..+.+...
T Consensus 98 ~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lekL~~fd~~~ 168 (204)
T PF04740_consen 98 DFLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEKLRAFDQQS 168 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667766665554 456666666665 45511 01112345577888888888888877666443
No 238
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=44.61 E-value=4.1e+02 Score=30.21 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=11.1
Q ss_pred hhhhhhhhhHHHHHHH
Q 002856 199 PEQVNDVKDLLEDYVE 214 (873)
Q Consensus 199 pe~V~~ikddieyYve 214 (873)
.+-+..++..++.||.
T Consensus 336 ~~~~~~~~~~~~~fv~ 351 (353)
T cd09236 336 AKILSQFRDACKAWVY 351 (353)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3566677777877774
No 239
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=44.56 E-value=2e+02 Score=33.40 Aligned_cols=99 Identities=23% Similarity=0.452 Sum_probs=62.5
Q ss_pred HhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHH
Q 002856 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIER 93 (873)
Q Consensus 14 ~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~ 93 (873)
++.|+.+-++-|+++-..|.+.+--+--++| ..|-||.++|+..-+.++.|....+ -|.+++.++
T Consensus 5 ~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~-~~lske~a~l~~iv~~~~~~~~~~~------------~l~~a~~~l-- 69 (363)
T COG0216 5 LLEKLESLLERYEELEALLSDPEVISDPDEY-RKLSKEYAELEPIVEKYREYKKAQE------------DLEDAKEML-- 69 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH--
Confidence 5678888888888888888777533333333 3577788888866666665543211 222222221
Q ss_pred HHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002856 94 EMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 94 ~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls 157 (873)
. ...|| |.++..+.=|.+|+.+++.+|.++.-|-
T Consensus 70 ----------------------~--~~~D~------em~ema~~Ei~~~~~~~~~le~~L~~lL 103 (363)
T COG0216 70 ----------------------A--EEKDP------EMREMAEEEIKELEAKIEELEEELKILL 103 (363)
T ss_pred ----------------------h--ccCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 11344 4555566678999999999999998874
No 240
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=44.52 E-value=3e+02 Score=32.02 Aligned_cols=125 Identities=14% Similarity=0.325 Sum_probs=73.5
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHH----hhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHH
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNK----VYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQAL 84 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K----~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L 84 (873)
.|++-+++.++|.++.-+..+++ +.+ .......+-..+++.+..|..+-..+..-+..- ..++..+
T Consensus 251 ~El~~V~~el~~~~~~~~~~~~~~~k~l~~--~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~--------~~~~~~~ 320 (412)
T PF04108_consen 251 QELPDVVKELQERLDEMENNEERTKKLLQS--QRDHIRELYNALSEALEELRKFGERLPSYLAAF--------HDFEERW 320 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 58889999999999988888888 542 122344444555555555555544333333221 1122345
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hc-cccccccccCCCCCCCchHH-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002856 85 VDARKLIEREMERFKICEKE-TK-TKAFSKEGLGQQPKTDPKEK-AKSETRDWLNNLVSELESQIDSFEAE 152 (873)
Q Consensus 85 ~e~Rk~IE~~MErFK~vEKe-~K-tKafSkEGL~~~~k~Dp~ek-ek~E~~~wL~~~IdeL~~QiE~~EaE 152 (873)
.+.+-.|+..|+.++.+-.- .. -.+|.+ |.. |- -|..+++.+...+..++.+++.+..|
T Consensus 321 ~~~~~~i~~~~~~l~~L~~~Y~~F~~aY~~--LL~-------Ev~RRr~~~~k~~~i~~~~~eeL~~l~ee 382 (412)
T PF04108_consen 321 EEEKESIQAYIDELEQLCEFYEGFLSAYDS--LLL-------EVERRRAVRDKMKKIIREANEELDKLREE 382 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666665554211 10 125544 432 43 34557889999999999998887655
No 241
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=44.32 E-value=4.2e+02 Score=33.67 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCC
Q 002856 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQ 117 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~ 117 (873)
.|.+....||..-|.--.++|+..+--|+-+++..
T Consensus 542 ~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~ 576 (809)
T KOG0247|consen 542 QLNDKKEQIEQLRDEIERLKKENLTTEYSIEILES 576 (809)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Confidence 45555567777666655566666665566555543
No 242
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=44.29 E-value=4.6e+02 Score=31.60 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=28.0
Q ss_pred hhHHHHhhhHHHhHHHH---HHHHHHhhcCCCch--hHHHH
Q 002856 9 GEIDRVLKKVQEGVDVF---DSIWNKVYDTDNAN--QKEKF 44 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~F---d~i~~K~~~a~n~n--QKEKl 44 (873)
+|.+++||+=-|.++.| .+.-+|++-+...- ++|++
T Consensus 189 qe~~~ll~~Rve~le~~Sal~~lq~~L~la~~~~~~~~e~~ 229 (554)
T KOG4677|consen 189 QEVRRLLKGRVESLERFSALRSLQDKLQLAEEAVSMHDENV 229 (554)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 68999999999999999 77778887665443 34444
No 243
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.56 E-value=5.7e+02 Score=32.57 Aligned_cols=60 Identities=23% Similarity=0.351 Sum_probs=39.0
Q ss_pred ccchhhhHHHHhhhH-HHhHHHHHHHHHHhhcCCC------chhHHHHHHHHHHHHHHH-----HHhHHHHH
Q 002856 4 SRKLQGEIDRVLKKV-QEGVDVFDSIWNKVYDTDN------ANQKEKFEADLKKEIKKL-----QRYRDQIK 63 (873)
Q Consensus 4 ~RKLQ~EIDr~lKKV-~EGve~Fd~i~~K~~~a~n------~nQKEKlE~DLKKEIKKL-----QR~RDQIK 63 (873)
.|-||.|=-|---.+ ++|+..-+.++.|+..-.+ .-.-|-||-.-|+||.++ .|+|+--|
T Consensus 799 LR~LQkeE~R~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eak 870 (1187)
T KOG0579|consen 799 LRRLQKEEARQQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAK 870 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777666654444 4788888888888874332 222567788888888887 35555433
No 244
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=43.55 E-value=5e+02 Score=29.47 Aligned_cols=67 Identities=24% Similarity=0.370 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCC---CCCccCCccccccCCCCCcccc
Q 002856 172 ETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD---DFEEFSDVDELYHLLPLDKVES 240 (873)
Q Consensus 172 e~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~nqd---df~ef~dde~iYd~L~Ld~~~~ 240 (873)
..+....+--|..||......+.. .-+++...|+.+|.+++.--+ ..++|.-....-.+|+|-+.+.
T Consensus 251 ss~Sn~lk~TIseLEKkFkIdd~t--n~~e~k~fK~qlE~ladqLl~ks~~id~f~tvt~~~~df~l~eles 320 (353)
T PF01540_consen 251 SSHSNKLKATISELEKKFKIDDST--NKEEMKKFKNQLENLADQLLEKSRQIDEFVTVTSAQEDFSLSELES 320 (353)
T ss_pred HHHHHHHHHHHHHHHHhhcccccc--chhHHHHHHHHHHHHHHHHHHhhcccchheeeecccccccHHHHHH
Confidence 333444566778888776654332 346777888888888874211 2235555667777888876653
No 245
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=43.54 E-value=1.8e+02 Score=31.64 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=71.4
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHH
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDAR 88 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~R 88 (873)
.+|-+..|||.-=.-.||..-.|+..+.+.....++|.||+.---|+.+..+--+.-+.+ |++.. ...|.+.+
T Consensus 133 k~i~k~RKkLe~rRLd~D~~k~r~~kAk~~~~~~~~e~elr~Ae~kF~~~~E~a~~~M~~--i~~~~-----~~~~~~L~ 205 (229)
T cd07594 133 KTISKERKLLENKRLDLDACKTRVKKAKSAEAIEQAEQDLRVAQSEFDRQAEITKLLLEG--ISSTH-----ANHLRCLR 205 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhcC-----chHHHHHH
Confidence 378888999999999999999999888777667788999988888888888877766654 44432 13889999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002856 89 KLIEREMERFKICEKET 105 (873)
Q Consensus 89 k~IE~~MErFK~vEKe~ 105 (873)
.+|+.+++=|+.|=..+
T Consensus 206 ~lv~AQl~Yh~q~~e~L 222 (229)
T cd07594 206 DFVEAQMTYYAQCYQYM 222 (229)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999885443
No 246
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=43.44 E-value=2.3e+02 Score=31.76 Aligned_cols=82 Identities=15% Similarity=0.262 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC
Q 002856 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k 120 (873)
=++|..||..-+.+|..+-++|+.-. +..+..+|..+..+|+.+- + . .
T Consensus 152 G~~L~~dl~~rl~~i~~~v~~i~~~~--------------p~~~~~~~~rL~~rl~el~--~------------~----~ 199 (291)
T TIGR00255 152 GENLKSDIVQRLDLIEREVKKVRSAM--------------PDILQWQRERLKARIEDLA--Q------------E----F 199 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--------------hHHHHHHHHHHHHHHHHHh--c------------C----C
Confidence 35788899999988888888887543 2378889999998888852 1 0 1
Q ss_pred CCchHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHhh
Q 002856 121 TDPKEKAKSETRDW-----LNNLVSELESQIDSFEAELEG 155 (873)
Q Consensus 121 ~Dp~ekek~E~~~w-----L~~~IdeL~~QiE~~EaE~E~ 155 (873)
.|+ ..--+|+.-| +.+=|+-|+..+++|..-++.
T Consensus 200 id~-~Rl~qEval~adK~DI~EEl~RL~sHl~~f~~~L~~ 238 (291)
T TIGR00255 200 LDL-NRLEQEAALLAQRIDIAEEIDRLDSHVKEFYNILKK 238 (291)
T ss_pred CCH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Confidence 354 2222333333 345577788888888888765
No 247
>PRK05287 hypothetical protein; Provisional
Probab=43.43 E-value=42 Score=36.79 Aligned_cols=123 Identities=20% Similarity=0.298 Sum_probs=70.8
Q ss_pred HHHHHH-HHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCch
Q 002856 46 ADLKKE-IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPK 124 (873)
Q Consensus 46 ~DLKKE-IKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ 124 (873)
+|||-| ||.|.|.|-.++.|..+.+|-.. .|......|+...+.-..+. |-|-..
T Consensus 57 ~DlKsdLlKeLerq~~~L~~~~~~p~vd~~--------~l~~~l~~l~~~~~~L~~~~---------r~Gq~L------- 112 (250)
T PRK05287 57 GDLKSDLLKELERQRQKLQKWRGNPGVDQE--------ALEALLQELEQASAALNAAP---------RIGQSL------- 112 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCHH--------HHHHHHHHHHHHHHHHHhcc---------cccchh-------
Confidence 588886 58899999999999999998643 57777777777666532221 111110
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-CCCC
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD-NDEL 197 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~-N~~l 197 (873)
.--+||..+=..+.--=-..+-++=.+..=..+....|.++++.+++-..-=..-|.++||+|. ++..
T Consensus 113 -----rede~L~siRQR~~iPGG~C~FDLP~yh~Wl~~p~~~R~~dl~~W~~~l~pl~~al~l~L~LlR~sg~~ 181 (250)
T PRK05287 113 -----REDRFLSSIRQRLSIPGGCCSFDLPALHAWLHLPQEQRQQDLQQWLAPLAPLRDALTLVLRLLRESGQF 181 (250)
T ss_pred -----hhhHHHHHHHHHhcCCCcccCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 1123444321111100011222222221111222245778888888888888888999999984 4443
No 248
>PF07072 DUF1342: Protein of unknown function (DUF1342); InterPro: IPR009777 This family consists of several hypothetical bacterial proteins of around 250 residues in length. Members of this family are often known as YacF after the Escherichia coli protein P36680 from SWISSPROT. The function of this family is unknown.; PDB: 2OEZ_A.
Probab=43.30 E-value=33 Score=36.61 Aligned_cols=48 Identities=25% Similarity=0.522 Sum_probs=34.2
Q ss_pred HHHHHH-HHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 002856 46 ADLKKE-IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKIC 101 (873)
Q Consensus 46 ~DLKKE-IKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~v 101 (873)
+|||-| ||.|.|++-.++.|..+.+|-.. +|.+....|+.....-..+
T Consensus 39 ~DlK~eLlKELeRq~~~L~~~~~~p~vd~~--------~l~~~l~~l~~~~~~L~~~ 87 (211)
T PF07072_consen 39 ADLKSELLKELERQRQKLNQWRDNPGVDQE--------ALDALLQELDQALQALQQA 87 (211)
T ss_dssp S-HHHHHHHHHHHHHHHHHCTTT-TTS-HH--------HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHH--------HHHHHHHHHHHHHHHHHhC
Confidence 477876 58899999999999999999754 5777777777766664433
No 249
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=43.11 E-value=93 Score=34.54 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~ 196 (873)
..+-+-..+++++.++|.+|.++..... +..-.++-+|++.+-+-+-++.-+-.+++.|....
T Consensus 148 i~d~~~~~le~i~~~~~~ie~~l~~~~~---~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~ 210 (322)
T COG0598 148 IVDNYFPVLEQIEDELEAIEDQLLASTT---NEELERLGELRRSLVYLRRALAPLRDVLLRLARRP 210 (322)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcCcc---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 3444455666666666666666543211 12336888899988887778877655555555554
No 250
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=43.10 E-value=5.7e+02 Score=32.39 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 002856 135 LNNLVSELESQIDSFEAELEG 155 (873)
Q Consensus 135 L~~~IdeL~~QiE~~EaE~E~ 155 (873)
.+..|.+.+++++.+-.++..
T Consensus 575 a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 575 AQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666543
No 251
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=42.80 E-value=2.5e+02 Score=29.40 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002856 42 EKFEADLKKEIKKLQRYRDQIKTWIQS 68 (873)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (873)
|-++.++++-.+.|+++-++.|.|..+
T Consensus 5 ~~~~~~f~~~e~~~~kL~k~~k~y~~a 31 (216)
T cd07599 5 EELEKDFKSLEKSLKKLIEQSKAFRDS 31 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777655
No 252
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.44 E-value=6.9e+02 Score=30.13 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=17.3
Q ss_pred cchhhhHHHHhhhHHHhH--------HHHHHHHHHhh
Q 002856 5 RKLQGEIDRVLKKVQEGV--------DVFDSIWNKVY 33 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGv--------e~Fd~i~~K~~ 33 (873)
.-+|+.|-|.=-||...+ +.||+.+.+++
T Consensus 4 k~~kKa~sRa~ekvlqk~g~~~~TkD~~FE~~~~~f~ 40 (460)
T KOG3771|consen 4 KGVQKALNRAPEKVLQKLGKVDETKDEQFEQEERNFN 40 (460)
T ss_pred hhhHHHhccccHHHHhhcCCcccccchHHHHHHHHHH
Confidence 445666655555555544 56777766663
No 253
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.36 E-value=1.6e+02 Score=32.26 Aligned_cols=89 Identities=11% Similarity=0.191 Sum_probs=61.2
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHH
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDAR 88 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~R 88 (873)
+||-+.-|||..-.-.||..-.|+..+.++..++.+..+++.-=.|+--.++--+.-+.+ |.+.. ..+...+
T Consensus 147 k~i~k~RKkle~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~a~E~a~~~M~~--il~~~------e~i~~L~ 218 (242)
T cd07600 147 QKAHKARKKVEDKRLQLDTARAELKSAEPAEKQEAARVEVETAEDEFVSATEEAVELMKE--VLDNP------EPLQLLK 218 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhHHHHHHHHHH--HHhhh------HHHHHHH
Confidence 478899999999999999999999888776555555555554334444444433333322 22211 3788899
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002856 89 KLIEREMERFKICEKET 105 (873)
Q Consensus 89 k~IE~~MErFK~vEKe~ 105 (873)
.+|+.+|+-||.|=+.+
T Consensus 219 ~fv~AQl~Yh~~~~e~L 235 (242)
T cd07600 219 ELVKAQLAYHKTAAELL 235 (242)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999986554
No 254
>PF15294 Leu_zip: Leucine zipper
Probab=42.29 E-value=3.2e+02 Score=30.79 Aligned_cols=98 Identities=21% Similarity=0.283 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHh
Q 002856 48 LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 127 (873)
Q Consensus 48 LKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~eke 127 (873)
|.|||.+||-=-+..|.=+.+-+.. ....++-|+.|+.+...-..+--..|.| +.++.....+...|..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~--------at~~l~Ek~kl~~~L~~lq~~~~~~~~k---~~~~~~~q~l~dLE~k 198 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQ--------ATSALDEKSKLEAQLKELQDEQGDQKGK---KDLSFKAQDLSDLENK 198 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccccccccchhhHHHH
Confidence 9999999985555554444443322 1256777888888877766655555544 3334333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 128 KSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 128 k~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
=..+..=|...+..+..+.+.++..+...
T Consensus 199 ~a~lK~e~ek~~~d~~~~~k~L~e~L~~~ 227 (278)
T PF15294_consen 199 MAALKSELEKALQDKESQQKALEETLQSC 227 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666667777777777666553
No 255
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=42.07 E-value=4.9e+02 Score=28.35 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 002856 41 KEKFEADLKKEIKKLQ 56 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQ 56 (873)
|..+..-|++.|.+|+
T Consensus 208 r~~~~~~l~~~i~~L~ 223 (367)
T PF04286_consen 208 RQEIDQKLRELIERLL 223 (367)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444444444444444
No 256
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=41.85 E-value=3.7e+02 Score=26.85 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=12.1
Q ss_pred hhhhhhhhhHHHHHHHhC
Q 002856 199 PEQVNDVKDLLEDYVERN 216 (873)
Q Consensus 199 pe~V~~ikddieyYve~n 216 (873)
.+.|.-+++-+.+|++..
T Consensus 158 e~r~~~~~~~l~~~~~~~ 175 (191)
T cd07610 158 EERLEILKDNLKNYINAI 175 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566667777777777643
No 257
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=41.81 E-value=3.5e+02 Score=26.54 Aligned_cols=115 Identities=11% Similarity=0.078 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCC
Q 002856 40 QKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQP 119 (873)
Q Consensus 40 QKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~ 119 (873)
.+++.|...+.++-+.++..++...=+. .|.++|.-.+.+|.. . ...|+
T Consensus 13 l~~~~ee~a~~~L~~a~~~~~~~~~~L~---------------~L~~~~~~~~~~~~~---~---------~~~g~---- 61 (146)
T PRK07720 13 LKENEKEKALGEYEEAVSRFEQVAEKLY---------------ELLKQKEDLEQAKEE---K---------LQSGL---- 61 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH---H---------hhCCC----
Confidence 4778888888888888877776654332 455555555544433 0 12333
Q ss_pred CCCchH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 002856 120 KTDPKE-KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELI 188 (873)
Q Consensus 120 k~Dp~e-kek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~l 188 (873)
++.+ .--..-...|.+.|......|..++.++|..... --....+...++.+.+|+..+....|..
T Consensus 62 --~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~-~~ea~~~~k~~ekLker~~~~~~~~e~r 128 (146)
T PRK07720 62 --SIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQD-LTEKNIEVKKYEKMKEKKQEMFALEEKA 128 (146)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 3445577788888888889999999998875210 0000112234777777776666555543
No 258
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=41.78 E-value=95 Score=27.14 Aligned_cols=59 Identities=29% Similarity=0.452 Sum_probs=42.2
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~ 69 (873)
.|+.+||+=. ||.+|.+-.=.+| ++.+...+...+..|..--+||.-||++|..+....
T Consensus 5 ~L~~~i~~E~-ki~~Gae~m~~~~----~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 5 ELQKKIDKEL-KIKEGAENMLQAY----STDKKKVLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHH----CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHH----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3566666553 5788888887777 333333588888888888899999999988776543
No 259
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=41.74 E-value=4.2e+02 Score=27.42 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 002856 135 LNNLVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 135 L~~~IdeL~~QiE~~EaE~E~Ls 157 (873)
+..-|.+++..++.++.++|.++
T Consensus 168 ~~~ei~~~~~~~~~~~~~~~~is 190 (236)
T PF09325_consen 168 AENEIEEAERRVEQAKDEFEEIS 190 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777776664
No 260
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=41.64 E-value=8.7 Score=46.96 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 142 LESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (873)
Q Consensus 142 L~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (873)
++..+..||.|-..|..+......+++..|+..++..+.-..+||.-.+..
T Consensus 457 l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~ 507 (713)
T PF05622_consen 457 LRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREA 507 (713)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555554444222222223566667666666666666677666544
No 261
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=41.46 E-value=2.1e+02 Score=24.01 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 129 SETRDWLNNLVSELESQIDSFEAELEGLTV-KKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (873)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~-KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (873)
..+..-|....++|+.+++.++..++.|.. =+|.....=.+..+.+.....-.+..|+.+...|
T Consensus 10 ~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l 74 (86)
T PF06013_consen 10 RAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELSQAL 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888999999999999999999843 2465543323333344444444555555544443
No 262
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=41.18 E-value=1.4e+02 Score=32.31 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=17.7
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhc
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYD 34 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~~ 34 (873)
|+|+-+...+|+|..--..|+....++..
T Consensus 123 kaqk~~~~~~~~l~kaKk~Y~~~cke~e~ 151 (258)
T cd07655 123 KAQKPWAKLLKKVEKAKKAYHAACKAEKS 151 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666543
No 263
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=41.06 E-value=1.8e+02 Score=31.44 Aligned_cols=65 Identities=26% Similarity=0.308 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhcc
Q 002856 85 VDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELES---QIDSFEAELEGLTVK 159 (873)
Q Consensus 85 ~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~---QiE~~EaE~E~Ls~K 159 (873)
.+.-|.||.+++.| +|+|.++-|..-. +.-|..+..+.+..++.-.+.+. -++..++|+.++..|
T Consensus 74 ~~~~r~ie~~l~~~--------~~~~~~~li~pLe--~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KK 141 (223)
T cd07605 74 VDTHKSIEASLEQV--------AKAFHGELILPLE--KKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKK 141 (223)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777 8888888774211 11122233344444444444443 356667777777543
No 264
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.06 E-value=1.1e+02 Score=35.34 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002856 83 ALVDARKLIEREMERFKI 100 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~ 100 (873)
....-|...|++|||.-+
T Consensus 215 ~~eklR~r~eeeme~~~a 232 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQA 232 (365)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345568888899998644
No 265
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=41.03 E-value=78 Score=32.58 Aligned_cols=27 Identities=26% Similarity=0.578 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002856 42 EKFEADLKKEIKKLQRYRDQIKTWIQS 68 (873)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (873)
|+|..+.++||+||=++|.--|+..--
T Consensus 76 e~Y~~~a~~Em~KLi~yk~~aKsyAkk 102 (152)
T PF11500_consen 76 ESYHEKAEKEMEKLIKYKQLAKSYAKK 102 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667789999999999999988887643
No 266
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=40.71 E-value=3.5e+02 Score=30.10 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 002856 41 KEKFEADLKKEIKKLQRYRDQIKT 64 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKt 64 (873)
..-++..+.+--..+++++..++.
T Consensus 83 l~~l~~~~~~l~a~~~~l~~~~~~ 106 (423)
T TIGR01843 83 AAELESQVLRLEAEVARLRAEADS 106 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333444444333334444333333
No 267
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=40.58 E-value=7.2e+02 Score=29.82 Aligned_cols=19 Identities=11% Similarity=0.261 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhhCCCC
Q 002856 178 HKAHIMKLELILRLLDNDEL 197 (873)
Q Consensus 178 hk~Hi~kLE~lLRlL~N~~l 197 (873)
|..++. +..|-..|+++.-
T Consensus 408 ~~l~~a-~~~l~~~l~~~~~ 426 (582)
T PF09731_consen 408 QQLWLA-VDALKSALDSGNA 426 (582)
T ss_pred HHHHHH-HHHHHHHHHcCCC
Confidence 333333 4445666777744
No 268
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=40.57 E-value=4.7e+02 Score=27.70 Aligned_cols=40 Identities=8% Similarity=0.264 Sum_probs=19.7
Q ss_pred HhhhHHHhHH-HHHHHHHHhhcCCCch-hHHHHHHHHHHHHHHHH
Q 002856 14 VLKKVQEGVD-VFDSIWNKVYDTDNAN-QKEKFEADLKKEIKKLQ 56 (873)
Q Consensus 14 ~lKKV~EGve-~Fd~i~~K~~~a~n~n-QKEKlE~DLKKEIKKLQ 56 (873)
+|+||..-|. .++++.+|+++ +. -=+-+..|+..+|.++.
T Consensus 3 if~Rl~~iv~a~~n~~~dk~ED---P~~~l~q~irem~~~l~~ar 44 (219)
T TIGR02977 3 IFSRFADIVNSNLNALLDKAED---PEKMIRLIIQEMEDTLVEVR 44 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHH
Confidence 4555554443 34556666654 23 23445555555555444
No 269
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=40.43 E-value=3.2e+02 Score=25.71 Aligned_cols=87 Identities=26% Similarity=0.327 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCC
Q 002856 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT 121 (873)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~ 121 (873)
+.|+.-.++|+..+-+=|+- . .+|.+.=++|+.+.+|-..-+.+ .-.....+
T Consensus 13 ~~l~~~~~~Ef~~I~~Er~v----------~---------~kLneLd~Li~eA~~r~~~~~~~---------~~~~~~~l 64 (109)
T PF03980_consen 13 EFLEENCKKEFEEILEERDV----------V---------EKLNELDKLIEEAKERKNSGERE---------KPVWRHSL 64 (109)
T ss_pred HHHHHHHHHHHHHHHHHhhH----------H---------HHHHHHHHHHHHHHHhHhccccC---------CCCCCCCC
Confidence 45666666777666655542 2 27888889999999884322222 11223457
Q ss_pred CchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 122 Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
+|.+--+......+...++.|+..++.++.+-+.|
T Consensus 65 ~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L 99 (109)
T PF03980_consen 65 TPEEDIRAHLAPYKKKEREQLNARLQELEEENEAL 99 (109)
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777777777777777777777766555
No 270
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=40.38 E-value=35 Score=38.83 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhhhc--ccCCCCch----hhHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CChhhhhhhhhHHHHHH
Q 002856 143 ESQIDSFEAELEGLTV--KKGKTRPP----RLTHLETSITRHKAHIMKLELILRLLDNDE--LSPEQVNDVKDLLEDYV 213 (873)
Q Consensus 143 ~~QiE~~EaE~E~Ls~--KK~K~~~~----r~~~le~~ierhk~Hi~kLE~lLRlL~N~~--l~pe~V~~ikddieyYv 213 (873)
.++.+.++.|.+.|.. +.=|.+-+ ..+.....|.+++.++..|-.-|+.+..+. .+.+.|++++++|...-
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Confidence 4455556666666532 22122222 233344567888988888888888886542 45777888888887654
No 271
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=40.20 E-value=9.4 Score=46.66 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 002856 136 NNLVSELESQIDSFEAELEG 155 (873)
Q Consensus 136 ~~~IdeL~~QiE~~EaE~E~ 155 (873)
...|+++++||..++.++..
T Consensus 362 ~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 362 KSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555433
No 272
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=39.92 E-value=1.6e+02 Score=32.45 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=29.4
Q ss_pred cccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCC
Q 002856 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD 36 (873)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~ 36 (873)
..||||++++.+++.|.----.|+..+...+.+.
T Consensus 114 ~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~ 147 (252)
T cd07675 114 EGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQ 147 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999998888777653
No 273
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.87 E-value=1.6e+02 Score=31.80 Aligned_cols=35 Identities=11% Similarity=0.362 Sum_probs=25.4
Q ss_pred HHHHHHHhhh--CCCCChhhhhhhhhHHHHHHHhCCC
Q 002856 184 KLELILRLLD--NDELSPEQVNDVKDLLEDYVERNQD 218 (873)
Q Consensus 184 kLE~lLRlL~--N~~l~pe~V~~ikddieyYve~nqd 218 (873)
.|-.-.+-|. ...|.-++|++|+|+++.|+|.+.+
T Consensus 108 AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~E 144 (218)
T KOG1655|consen 108 AMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADE 144 (218)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333344443 3578899999999999999997654
No 274
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=39.87 E-value=2.9e+02 Score=29.88 Aligned_cols=15 Identities=0% Similarity=0.022 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 002856 132 RDWLNNLVSELESQI 146 (873)
Q Consensus 132 ~~wL~~~IdeL~~Qi 146 (873)
..||++++-.+..-+
T Consensus 203 l~~lk~~L~~y~~~~ 217 (233)
T cd07649 203 IEMIRQHLCQYTQLR 217 (233)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356666666655544
No 275
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=39.82 E-value=85 Score=28.52 Aligned_cols=85 Identities=21% Similarity=0.268 Sum_probs=39.2
Q ss_pred HHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHH
Q 002856 51 EIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE 130 (873)
Q Consensus 51 EIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E 130 (873)
.|.|+++++.++..-.+.- ..|....+.++..++.-..++-+ ++.|=.-|=+- -...+.+
T Consensus 3 ~~~~~~~l~~~l~~~~~q~------------~~l~~~~~~~~~~~~eL~~l~~~--~~~y~~vG~~f------v~~~~~~ 62 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQI------------QQLERQLRELELTLEELEKLDDD--RKVYKSVGKMF------VKQDKEE 62 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHTSSTT---EEEEEETTEE------EEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhCCCc--chhHHHHhHHH------HHhhHHH
Confidence 3566666666665322210 13334444444444444444444 45565555432 1223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEG 155 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~ 155 (873)
+..-|..-++.|...|+.++.+++.
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~ 87 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKY 87 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5445555555555555555544443
No 276
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=39.75 E-value=3.4e+02 Score=32.31 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 129 SETRDWLNNLVSELESQIDSFEAELEG 155 (873)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaE~E~ 155 (873)
.+-.+=|-.-||.|+.-||.+..++-.
T Consensus 216 ~~~Sd~lltkVDDLQD~vE~LRkDV~~ 242 (426)
T smart00806 216 SEDSDSLLTKVDDLQDIIEALRKDVAQ 242 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777787777777777644
No 277
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=39.48 E-value=5.1e+02 Score=28.19 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002856 83 ALVDARKLIEREMERFK 99 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK 99 (873)
...+--+.|-.+|+||.
T Consensus 181 ~fe~Is~~~k~El~rFe 197 (234)
T cd07664 181 DFEQISKTIRKEVGRFE 197 (234)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555667777888873
No 278
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=39.19 E-value=4.4e+02 Score=28.01 Aligned_cols=106 Identities=22% Similarity=0.337 Sum_probs=0.0
Q ss_pred CccccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhh
Q 002856 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASY 80 (873)
Q Consensus 1 Maa~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~ 80 (873)
|++.|-+-.+=-+++-..+......+..-+++....-.+.-+|++ +|++||+.+++--++++.
T Consensus 108 i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~-~~~~ev~~~e~~~~~a~~---------------- 170 (224)
T cd07623 108 IGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLD-QAQQEIKEWEAKVDRGQK---------------- 170 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH-HHHHHHHHHHHHHHHHHH----------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 002856 81 EQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE-----TRDWLNNLVSELESQIDSFEA 151 (873)
Q Consensus 81 ~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E-----~~~wL~~~IdeL~~QiE~~Ea 151 (873)
...+-.+.|-.+|+|| +++|.. ...||...|+.=++.++.+|.
T Consensus 171 --~fe~is~~~k~El~rF--------------------------~~erv~dfk~~l~~~le~~i~~q~~~~~~We~ 218 (224)
T cd07623 171 --EFEEISKTIKKEIERF--------------------------EKNRVKDFKDIIIKYLESLLNTQQQLIKYWEA 218 (224)
T ss_pred --HHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 279
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=39.16 E-value=2.7e+02 Score=28.92 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhh
Q 002856 89 KLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRL 168 (873)
Q Consensus 89 k~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~ 168 (873)
+-|+.-|||+-++|-+.-.=.-+-+|.. | ...=+.+-|+.|...|+.++..+|-++.+-.-=+..-.
T Consensus 44 e~id~imer~~~ieNdlg~~~~~~~g~k---------k----~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~ 110 (157)
T COG3352 44 EVIDAIMERMTDIENDLGKVKIEIEGQK---------K----QLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTP 110 (157)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchh---------h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhH
Confidence 4566777777777765322111222221 1 11123356777777888888888777644221000011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002856 169 THLETSITRHKAHIMKLELILRLLDND 195 (873)
Q Consensus 169 ~~le~~ierhk~Hi~kLE~lLRlL~N~ 195 (873)
++++..++-..-.|.+|+.|+.++-+|
T Consensus 111 qes~~~veel~eqV~el~~i~emv~~d 137 (157)
T COG3352 111 QESRGIVEELEEQVNELKMIVEMVIKD 137 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 122223344444555555555554443
No 280
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=39.10 E-value=4e+02 Score=28.46 Aligned_cols=106 Identities=19% Similarity=0.230 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 002856 81 EQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK 160 (873)
Q Consensus 81 ~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK 160 (873)
-...+++-|++-+.||+|= ++|.-+++.|-..- ...+-.|+..||.+|..++.+-...
T Consensus 45 Ld~yL~yQKafnE~MekYL-------------e~lNlPSr~Diarv---------A~lvinlE~kvD~lee~fdd~~d~l 102 (189)
T TIGR02132 45 LDLNLFYQKALNDTTGNYL-------------EQVNVPTKEDIANV---------ASLVINLEEKVDLIEEFFDDKFDEL 102 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HhCCCCCHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466789999999999972 35555554332211 1122233334443333333321111
Q ss_pred C------CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHH
Q 002856 161 G------KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 214 (873)
Q Consensus 161 ~------K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve 214 (873)
+ ..-..++..++. |.+.-=.|+..||++|+-..-+- +++||-|..-|.
T Consensus 103 ~~q~eq~~~~~~~v~~~~q---~~~~l~~K~D~~L~llE~~~~~~---~~~~~~~~~~~~ 156 (189)
T TIGR02132 103 EAQQEQAPALKKDVTKLKQ---DIKSLDKKLDKILELLEGQQKTQ---DELKETIQKQIK 156 (189)
T ss_pred HHHHhhCchHHhHHHHHHH---HHHHHHHHHHHHHHHHhcCccch---hHHHHHHHHHHh
Confidence 1 011123444443 33444457778999998765443 345555555554
No 281
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=38.86 E-value=51 Score=28.78 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=19.6
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002856 67 QSSEIKDKKVSASYEQALVDARKLIEREMERFK 99 (873)
Q Consensus 67 ~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK 99 (873)
.+.+.|++. .=...||.|-..||+|+
T Consensus 30 ~s~~LK~~G-------Ip~r~RryiL~~~ek~r 55 (57)
T PF09597_consen 30 SSKQLKELG-------IPVRQRRYILRWREKYR 55 (57)
T ss_pred CHHHHHHCC-------CCHHHHHHHHHHHHHHh
Confidence 344566666 45678999999999996
No 282
>KOG3270 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.84 E-value=54 Score=36.00 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=51.0
Q ss_pred hHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHH
Q 002856 17 KVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREME 96 (873)
Q Consensus 17 KV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~ME 96 (873)
|..|+-+-|++.++-|..-.+-.+.-+...||-++++||+|. |.- .+-.|+|.|...+..-+
T Consensus 89 r~~d~~~Q~i~lldQv~~l~~l~~~~~~~e~L~~~~e~l~r~----------nl~--------~~p~l~el~~~~~~~~t 150 (244)
T KOG3270|consen 89 RDKDAEEQFIELLDQVQKLNGLEVARKIQEKLVKSVEKLARE----------NLE--------KEPALVELRNQASDIFT 150 (244)
T ss_pred hchhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc----------chh--------hccchHHHHhhhhhhhh
Confidence 477888999999999988777565448888899999999874 222 23479999999998887
Q ss_pred HHHH
Q 002856 97 RFKI 100 (873)
Q Consensus 97 rFK~ 100 (873)
.|+.
T Consensus 151 ~~~~ 154 (244)
T KOG3270|consen 151 QLEN 154 (244)
T ss_pred hhhc
Confidence 7754
No 283
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=38.61 E-value=1.4e+02 Score=28.14 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhhCCCCChhhhhhhhhHH
Q 002856 171 LETSITRHKAHIMK-LELILRLLDNDELSPEQVNDVKDLL 209 (873)
Q Consensus 171 le~~ierhk~Hi~k-LE~lLRlL~N~~l~pe~V~~ikddi 209 (873)
++..+++-.-.+.+ ++.|-|+|+++.|.++.+++++-.+
T Consensus 48 m~Ki~~kg~~yv~~E~~RL~~iL~~~~ls~~K~del~~R~ 87 (93)
T cd00238 48 MEKILEKGEDYVEKELARLERLLEKKGLAPEKADELTRRL 87 (93)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34444444445554 8888899999999999999976544
No 284
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=38.59 E-value=5.2e+02 Score=28.17 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 002856 138 LVSELESQIDSFEAEL 153 (873)
Q Consensus 138 ~IdeL~~QiE~~EaE~ 153 (873)
.+..++..|..+|+.|
T Consensus 54 eLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 54 ELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455555555554
No 285
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=38.49 E-value=7.7e+02 Score=29.57 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=31.5
Q ss_pred hHHHhHHHHHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHhHHHHHHhhc
Q 002856 17 KVQEGVDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKTWIQ 67 (873)
Q Consensus 17 KV~EGve~Fd~i~~K~~~a~n-~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~ 67 (873)
.|.|-+..|+++...+..... ...-+.+-...+.+|..|++-=..++.+..
T Consensus 224 ~~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~ 275 (582)
T PF09731_consen 224 EVQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEE 275 (582)
T ss_pred hHHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777766655544 345566677777777777764444554443
No 286
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=38.43 E-value=4.2e+02 Score=32.55 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=33.2
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (873)
|++.+|+.+..++.+|-.+.-|.+-=.++..+..+=++==+..|.-|+|+|+..-.-...|...
T Consensus 167 ~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a 230 (557)
T COG0497 167 KQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQNA 230 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455556655555555544444443333333333333334456777777777665555555443
No 287
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=38.21 E-value=5.6e+02 Score=32.30 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 133 DWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 133 ~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
+|.++ ++.++.+++.+.+-++.+
T Consensus 636 ~~~~E-L~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 636 EFKKE-LERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34443 446666666666666655
No 288
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=38.15 E-value=5.6e+02 Score=31.94 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 002856 133 DWLNNLVSELESQIDSFEAELE 154 (873)
Q Consensus 133 ~wL~~~IdeL~~QiE~~EaE~E 154 (873)
.|+..-|..+.+.|+.|+.+++
T Consensus 470 ~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 470 VRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HhhhHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666665553
No 289
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=38.10 E-value=6.5e+02 Score=28.58 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 129 SETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
.+-..+++..|++++.++..++.+|..+
T Consensus 231 ~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 231 EEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544
No 290
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=38.06 E-value=2.7e+02 Score=27.42 Aligned_cols=93 Identities=26% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhh---------cCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhH
Q 002856 11 IDRVLKKVQEGVDVFDSIWNKVY---------DTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYE 81 (873)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~~K~~---------~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~ 81 (873)
++-+-|=..+|+-..-.+++|++ .--|+.+=-+|-.||.++||+-|
T Consensus 5 ~~~l~k~~~~gaG~~a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k~~~------------------------- 59 (108)
T COG3937 5 GEGLRKLALIGAGLAAETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQ------------------------- 59 (108)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh-------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002856 82 QALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 153 (873)
Q Consensus 82 ~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~ 153 (873)
...+.. |.++|+- .-++.++..+...+. |+.=|+.|++|+-.+|.++
T Consensus 60 -~e~e~K--~~r~i~~-----------ml~~~~~~r~~~~~~-----------l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 60 -GELEEK--IPRKIEE-----------MLSDLEVARQSEMDE-----------LTERVDALERQVADLENKL 106 (108)
T ss_pred -hhHHHh--hhHHHHH-----------HHhhccccccchHHH-----------HHHHHHHHHHHHHHHHHHh
No 291
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=38.01 E-value=1.9e+02 Score=25.41 Aligned_cols=54 Identities=7% Similarity=0.348 Sum_probs=30.5
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhh---cCCCchhHHHHHHHHHHHHHHHHHhHHHHH
Q 002856 10 EIDRVLKKVQEGVDVFDSIWNKVY---DTDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~~K~~---~a~n~nQKEKlE~DLKKEIKKLQR~RDQIK 63 (873)
+-.+.+++|...|+..+++.+.|. ..-+.+.|..|...|+.--..|.+++.+++
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455556666666666655554 122556777777776665555555555544
No 292
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=37.75 E-value=9.9e+02 Score=30.62 Aligned_cols=67 Identities=24% Similarity=0.370 Sum_probs=40.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----c----c----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTV-----K----K----GKTRPPRLTHLETSITRHKAHIMKLELILRL 191 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~-----K----K----~K~~~~r~~~le~~ierhk~Hi~kLE~lLRl 191 (873)
++++.|-.+=+...+..|+..++.++.++..... | | .=++..+|..|+-.++..+.-+.+|+.=|.-
T Consensus 460 e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 460 EKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5566666667777777777777777777654321 0 1 0122346666666677766666676655544
No 293
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=37.57 E-value=2.1e+02 Score=29.16 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002856 83 ALVDARKLIEREMERFK 99 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK 99 (873)
.|.+.+|.+|.+.+++|
T Consensus 65 rL~~rkk~~e~~~~~Lk 81 (162)
T PF05565_consen 65 RLQERKKSIENRIDRLK 81 (162)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555544
No 294
>PF04943 Pox_F11: Poxvirus F11 protein; InterPro: IPR007027 These proteins belong to the poxvirus F11 family. They are early virus proteins.
Probab=37.56 E-value=1.3e+02 Score=34.98 Aligned_cols=93 Identities=15% Similarity=0.269 Sum_probs=55.5
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhh-cCCCch----hHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhh
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVY-DTDNAN----QKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASY 80 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~-~a~n~n----QKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~ 80 (873)
||..++|+|.-+.- =+.+|..+|+.++ +-.+.. -....+.=+.+-|+-|+..|+|+- -+++.+++-..-|-+
T Consensus 219 k~r~~lEk~y~~~~-~~~El~~~Yd~~~a~~~~~~~is~~~~rs~~i~~~~~~~le~m~k~~~--~~~~~~~~~~l~~~m 295 (366)
T PF04943_consen 219 KLRILLEKCYSRIC-MINELNHIYDSIYANHNNSRPISDIIKRSHDILTHGINNLEAMNKEAS--KAKNTIRPNSLKARM 295 (366)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCccHHHHHhcchHHHHhhhhhccchhhhhh--hccCCCChhHHHHHH
Confidence 44556666655544 4566777777776 332222 255667778999999999997765 455555543322233
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002856 81 EQALVDARKLIEREMERFKIC 101 (873)
Q Consensus 81 ~~~L~e~Rk~IE~~MErFK~v 101 (873)
+.-+.+.++.|.+.-|.+|.+
T Consensus 296 ~~Dv~el~~~i~elwde~~~l 316 (366)
T PF04943_consen 296 EKDVNELLKSIPELWDEIKNL 316 (366)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 345555566666655555443
No 295
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=37.49 E-value=5.6e+02 Score=27.64 Aligned_cols=28 Identities=36% Similarity=0.316 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002856 41 KEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (873)
+++--...+.+|.+|+.-|||...=+++
T Consensus 60 ~~~~~~~~~~~i~~~~~erdq~~~dL~s 87 (207)
T PF05010_consen 60 KQKQKELSEAEIQKLLKERDQAYADLNS 87 (207)
T ss_pred HHhhHHhHHHHHHHHHhhHHHHHHHHHH
Confidence 3333555678888999999987765554
No 296
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=37.49 E-value=3.3e+02 Score=31.20 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 166 PRLTHLETSITRHKAHIMKLELILRLL 192 (873)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (873)
+||+++...+.+.+.||.-|=.-||-.
T Consensus 140 eRia~~cnaL~qYkqhIelfG~nLrqc 166 (421)
T KOG4429|consen 140 ERIAHCCNALGQYKQHIELFGPNLRQC 166 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 488999999999999998776666543
No 297
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=37.34 E-value=1.7e+02 Score=29.79 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccC---------CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKG---------KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS 198 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~---------K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~ 198 (873)
.++-|-+.+++...+++.+....+.++.|=. =..+.|+.++.+.|...=.|...||.|.|.|.+....
T Consensus 15 ~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~s 91 (157)
T PF04136_consen 15 ECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSS 91 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCc
Confidence 3344444556666666666666655543211 0235689999999999999999999999999988754
No 298
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.33 E-value=2.2e+02 Score=31.16 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=29.4
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC
Q 002856 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN 37 (873)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n 37 (873)
.+|+|+++++.+++|.----.|+..+...+.+..
T Consensus 116 ~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~ 149 (253)
T cd07676 116 GRKAQQHIETCWKQLESSKRRFERDCKEADRAQQ 149 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999998888876644
No 299
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=37.33 E-value=6.3e+02 Score=28.21 Aligned_cols=169 Identities=17% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHh--------------HHHHHHhhccccccccccc
Q 002856 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRY--------------RDQIKTWIQSSEIKDKKVS 77 (873)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~--------------RDQIKtW~~s~eIKDK~~~ 77 (873)
++++|+|++|...=+++-+=| ..|.++|..--|++.+|=|- |+-.+.-..--|-=..-
T Consensus 8 ~~~vkR~~DG~~~C~dl~~~~------~ERA~IE~~Yak~L~~~akkw~~~ie~gpeyGTl~~aw~~~~~Eae~~s~~-- 79 (258)
T cd07679 8 KRTVKRIDDGHRLCNDLMNCL------HERARIEKVYAQQLTEWAKRWRQLVEKGPQYGTVEKAWCALMSEAEKVSEL-- 79 (258)
T ss_pred HHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHH--
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc------cc--------------------------------------
Q 002856 78 ASYEQALVDARKLIEREMERFKICEKETKTKAFS------KE-------------------------------------- 113 (873)
Q Consensus 78 ~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafS------kE-------------------------------------- 113 (873)
-+.=.-.|+++.+|.||..-|+...|.+- |+
T Consensus 80 -----H~~l~~~L~~e~~e~ir~wQKe~~hk~~~~~~Ke~k~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~ 154 (258)
T cd07679 80 -----HLEVKASLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATS 154 (258)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred ---ccCCCCCCCchHHhHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHH
Q 002856 114 ---GLGQQPKTDPKEKAKS------------ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH 178 (873)
Q Consensus 114 ---GL~~~~k~Dp~ekek~------------E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierh 178 (873)
-....+-..|++.+|. .+.+--...|++|+.=...++.+++..=.+=--...+||.-|...+-.|
T Consensus 155 ~~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q~~E~eRi~F~K~~l~~~ 234 (258)
T cd07679 155 REANSKADPALNPEQLKKLQDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEV 234 (258)
T ss_pred HHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH-----HHHHHHhhh
Q 002856 179 KAHIMK-----LELILRLLD 193 (873)
Q Consensus 179 k~Hi~k-----LE~lLRlL~ 193 (873)
.-|+.- ++.|-+-|.
T Consensus 235 ~~~l~i~~~~~~~~i~~~L~ 254 (258)
T cd07679 235 QKHLDLSNVASYKNIYRELE 254 (258)
T ss_pred HHHccchhhhhHHHHHHHHH
No 300
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=37.31 E-value=78 Score=33.55 Aligned_cols=60 Identities=28% Similarity=0.349 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhccc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccC
Q 002856 47 DLKKEIKKLQRYRDQIKTWIQSS-EIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLG 116 (873)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~-eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~ 116 (873)
-|++|=+-|++.++.++.--..- .|+|+. ...+.-++++.=.+||+....-.+ +.+.+|.
T Consensus 83 ~l~~Ek~ai~~a~~e~~~~~~~i~ki~d~~-------~k~qa~~l~~~~~~ry~~~~~l~~---~Y~~~l~ 143 (204)
T PF10368_consen 83 ELKKEKEAIEKAKEEFKKAKKYIDKIEDEK-------LKKQAKELNEAMKKRYKSYDKLYK---AYKKALE 143 (204)
T ss_dssp HHHHHHHHHHHHHHHHTT----------HH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchh-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 46666666777777776544433 578877 666666777777777777665443 3455553
No 301
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=37.25 E-value=6.6e+02 Score=28.45 Aligned_cols=45 Identities=9% Similarity=0.009 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCC----hhhhhhhhhHHHHHHH
Q 002856 170 HLETSITRHKAHIMKLELILRLLDNDELS----PEQVNDVKDLLEDYVE 214 (873)
Q Consensus 170 ~le~~ierhk~Hi~kLE~lLRlL~N~~l~----pe~V~~ikddieyYve 214 (873)
+-+..+++.+.=..+...|...|+-|.=- .+.|..++..++.||.
T Consensus 306 ~R~~~l~~l~~ay~~y~el~~~l~~G~~FY~dL~~~~~~l~~~~~~fv~ 354 (356)
T cd09237 306 LRKEFFEKLKKAYNSFKKFSAGLPKGLEFYDDLLKMAKDLAKNVQAFVN 354 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444433334444444444444311 3445556666666663
No 302
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=37.20 E-value=81 Score=32.83 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=30.6
Q ss_pred HhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002856 57 RYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKT 107 (873)
Q Consensus 57 R~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~Kt 107 (873)
++.++|+.+...-+.|+-+ .++| .|+-+|+-||+-|.+-..+|--.+-
T Consensus 96 ~l~~ri~eLe~~l~~kad~-vvsY--qll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 96 TITRRLDELERQLQQKADD-VVSY--QLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHhh-hhhH--HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444222 1344 7999999999999999888866553
No 303
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=37.14 E-value=2.5e+02 Score=24.06 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHH
Q 002856 168 LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLED 211 (873)
Q Consensus 168 ~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddiey 211 (873)
...++.-|..|+-++..|...-..|.+.. +.....|++.++.
T Consensus 43 ~~~~~~ei~~~~~~l~~l~~~~~~L~~~~--~~~~~~i~~~~~~ 84 (105)
T PF00435_consen 43 HKELQEEIESRQERLESLNEQAQQLIDSG--PEDSDEIQEKLEE 84 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HTTHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence 35566666777777777766666663333 4444444444443
No 304
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=37.05 E-value=9.2e+02 Score=30.60 Aligned_cols=181 Identities=20% Similarity=0.214 Sum_probs=85.6
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhh------cCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcccccc-ccccchhhH-
Q 002856 10 EIDRVLKKVQEGVDVFDSIWNKVY------DTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK-DKKVSASYE- 81 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~~K~~------~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIK-DK~~~~~~~- 81 (873)
++++-.-|..+....+++++..+. ..-...|+.|++--++.|+-- ++.+++.|.-.-=-+ +|.+-.-..
T Consensus 354 ~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~---l~q~l~~~~k~e~~e~~k~~~d~~~r 430 (698)
T KOG0978|consen 354 EKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETES---LLQRLKALDKEERSEIRKQALDDAER 430 (698)
T ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 555666667777888888777422 333455666555333333322 233333333211000 000000000
Q ss_pred --HHHHHHHHHHHHHHHHHH--HHHhhhccccccccc-----cCC--CCCCCc-------------hHHhHHHHHHHHHH
Q 002856 82 --QALVDARKLIEREMERFK--ICEKETKTKAFSKEG-----LGQ--QPKTDP-------------KEKAKSETRDWLNN 137 (873)
Q Consensus 82 --~~L~e~Rk~IE~~MErFK--~vEKe~KtKafSkEG-----L~~--~~k~Dp-------------~ekek~E~~~wL~~ 137 (873)
..+.+.-+-|...++-|| ..|-++..-||...= |.. ..+.|- .-+.-.+...=|..
T Consensus 431 ~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~ 510 (698)
T KOG0978|consen 431 QIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEE 510 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134444455566777777 445555555665410 000 001110 01122233444555
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc--cC----CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 138 LVSELESQIDSFEAELEGLTVK--KG----KTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (873)
Q Consensus 138 ~IdeL~~QiE~~EaE~E~Ls~K--K~----K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~ 193 (873)
.|-+|..+++.++..+-.|..+ .. .+....+..+...++.|++|+..+..-++-|.
T Consensus 511 ~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq 572 (698)
T KOG0978|consen 511 QILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQ 572 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665554211 00 01123455566677888888887777776654
No 305
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=36.87 E-value=6e+02 Score=31.83 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=15.2
Q ss_pred chhHHHHHHH------HHHHHHHHHHhHHHHHHh
Q 002856 38 ANQKEKFEAD------LKKEIKKLQRYRDQIKTW 65 (873)
Q Consensus 38 ~nQKEKlE~D------LKKEIKKLQR~RDQIKtW 65 (873)
+.+|+.||.. +++.|+-|+-.++.+|.|
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (670)
T KOG0239|consen 209 QEERRVLADSLGNYADLRRNIKPLEGLESTIKKK 242 (670)
T ss_pred HHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHH
Confidence 4445556553 445555555555555555
No 306
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.87 E-value=6.1e+02 Score=27.93 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=33.3
Q ss_pred HHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhC
Q 002856 147 DSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERN 216 (873)
Q Consensus 147 E~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~n 216 (873)
+....++|.+..-+.|++.+| +.++.-++....-+.+.+..|| -|=+.-.-+.+.|+|.-+-.|++.+
T Consensus 159 ~~~Q~~le~k~e~l~k~~~dr-~~~~~ev~~~e~kve~a~~~~k-~e~~Rf~~~k~~D~k~~~~~yae~~ 226 (243)
T cd07666 159 DQIQAELDSKVEALANKKADR-DLLKEEIEKLEDKVECANNALK-ADWERWKQNMQTDLRSAFTDMAENN 226 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777643222223344 4555544444333333344433 1111122456667777777777755
No 307
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=36.79 E-value=1e+02 Score=30.25 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002856 80 YEQALVDARKLIEREMERFKICEKETKTK 108 (873)
Q Consensus 80 ~~~~L~e~Rk~IE~~MErFK~vEKe~KtK 108 (873)
++..|.+.|..|...++.++.++.+-..|
T Consensus 53 ~~~~l~~~r~~l~~~~~~~~~L~~~~~~k 81 (150)
T PF07200_consen 53 LEPELEELRSQLQELYEELKELESEYQEK 81 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588899999999999999888776554
No 308
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.68 E-value=50 Score=35.55 Aligned_cols=131 Identities=24% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhhhhcc---------cCCCC-chhhHHHHHHHHHHHHHHHHHHH------HHHh
Q 002856 129 SETRDWLNNLVSELESQIDSF-EAELEGLTVK---------KGKTR-PPRLTHLETSITRHKAHIMKLEL------ILRL 191 (873)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~-EaE~E~Ls~K---------K~K~~-~~r~~~le~~ierhk~Hi~kLE~------lLRl 191 (873)
.|+.+-|..--+-|+++|+.- |....+...| |+||. ...+.+|...+.+..+....||. +||.
T Consensus 27 rEteemL~KKqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~ 106 (221)
T KOG1656|consen 27 RETEEMLEKKQEFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDA 106 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHH
Q ss_pred hhCC---------CCChhhhhhhhhHHHHHHHhCCC--C-------CCccCCccccccCCC-CCcccccccccccCCCCC
Q 002856 192 LDND---------ELSPEQVNDVKDLLEDYVERNQD--D-------FEEFSDVDELYHLLP-LDKVESLEDLVTIGPPGL 252 (873)
Q Consensus 192 L~N~---------~l~pe~V~~ikddieyYve~nqd--d-------f~ef~dde~iYd~L~-Ld~~~~~~~~~~~~p~~~ 252 (873)
|..+ .+|.++|+++=|+|..-.+..++ | |-...|+|+|-.+|+ |+.++....+..+..|..
T Consensus 107 m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v 186 (221)
T KOG1656|consen 107 MGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLDIRAPPV 186 (221)
T ss_pred HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q ss_pred ccccccc
Q 002856 253 VKATVIS 259 (873)
Q Consensus 253 ~~~~~~s 259 (873)
.-+.|.+
T Consensus 187 ~LP~vPs 193 (221)
T KOG1656|consen 187 PLPDVPS 193 (221)
T ss_pred CCCCCCc
No 309
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=36.68 E-value=68 Score=36.72 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhcccc
Q 002856 47 DLKKEIKKLQRYRDQIKTWIQSSE 70 (873)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~e 70 (873)
|+||.++ ..+|++.++|---.+
T Consensus 51 ~~Kk~~~--~qLrE~~et~~KE~~ 72 (370)
T PF02994_consen 51 DFKKDFK--NQLREQDETPEKELK 72 (370)
T ss_dssp ------------------------
T ss_pred HhhhhhH--HHHHHhhhhhhhhhh
Confidence 4455444 356888888865433
No 310
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.56 E-value=2e+02 Score=33.78 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhCCCCChhhhh-hhhhHHHHHHHhCCCCC
Q 002856 183 MKLELILRLLDNDELSPEQVN-DVKDLLEDYVERNQDDF 220 (873)
Q Consensus 183 ~kLE~lLRlL~N~~l~pe~V~-~ikddieyYve~nqddf 220 (873)
.+.+.+-++|..-.++.+.|. .|+++++.|-++-..||
T Consensus 431 ~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~~~~~d~ 469 (503)
T KOG2273|consen 431 EKVNELEELLALKELELDEISERIRAELERFEESRRQDF 469 (503)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555556655555 48888888877554454
No 311
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.41 E-value=4.1e+02 Score=33.88 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=83.1
Q ss_pred HhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH-------HhHHHHHHhhccccccccccchhhHHHHHH
Q 002856 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ-------RYRDQIKTWIQSSEIKDKKVSASYEQALVD 86 (873)
Q Consensus 14 ~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQ-------R~RDQIKtW~~s~eIKDK~~~~~~~~~L~e 86 (873)
+|..+.-.|+.|+++---++. --|.|+.||-|- |.-.|..+-. .+.-
T Consensus 230 ~~S~~~t~v~~F~DLe~A~e~----------V~~~K~Qi~~L~PLV~~~~r~e~~~~S~~----------------~~~A 283 (1104)
T COG4913 230 TFSIAKTAVEQFQDLEGAYEQ----------VEDIKRQIHTLDPLVQLKNRREKAQQSKD----------------HANA 283 (1104)
T ss_pred chhHHHHHHHHHHhHHHHHHH----------HHHHHHHHhhhhHHHHHHHHHHHHHHhHH----------------HHHH
Confidence 466677778888876333211 136788887763 3332222222 3334
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhH---HHHHHHHHHHHH-HHHHHHHHHHHHHhhhhcccC-
Q 002856 87 ARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAK---SETRDWLNNLVS-ELESQIDSFEAELEGLTVKKG- 161 (873)
Q Consensus 87 ~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek---~E~~~wL~~~Id-eL~~QiE~~EaE~E~Ls~KK~- 161 (873)
.||.+-.---|.|--|.++...+|.-|.-.+..|+.-.+.++ .|...-+.+.+. ---.|.+.+-+++|.+-.||.
T Consensus 284 ~k~aL~~~~~~iK~E~~~~~v~~~t~E~tQ~~~~ve~~~~e~~~A~~~~T~~~~~vk~~~G~~~~~LsA~~E~~~~~r~~ 363 (1104)
T COG4913 284 LKKALPTVGNRIKKEEQETLVRQFTVEQTQAKSKVESAKIETDRAREMETLAHDNVKQIVGAQHGILSAKREGAVDKRRT 363 (1104)
T ss_pred HHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555555443322222222221 122222222222 223566777777777743332
Q ss_pred ----------------CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 002856 162 ----------------KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDEL 197 (873)
Q Consensus 162 ----------------K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l 197 (873)
-..++--+++-+...+-+.|+..+--....|+|+.-
T Consensus 364 ~~~~~~~~~aLv~~l~~aAP~~A~~~L~~~~~~~~~~dE~~AA~E~L~~~~~ 415 (1104)
T COG4913 364 ISTARAGLDALVKGLGGAAPESAEELLELNNAARLTVDEYPAAREALESAGQ 415 (1104)
T ss_pred HHHhhhHHHHHHHhccCCCcccHHHHHHHHHHHHHhHhhhHHHHHHHHhccc
Confidence 112334455555667888999999999999998864
No 312
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=36.28 E-value=1.5e+02 Score=30.11 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCC--CChhhhhhhhhHHHHHHHhC
Q 002856 169 THLETSITRHKAHIMKLELILRLLDNDE--LSPEQVNDVKDLLEDYVERN 216 (873)
Q Consensus 169 ~~le~~ierhk~Hi~kLE~lLRlL~N~~--l~pe~V~~ikddieyYve~n 216 (873)
+.|+.+++--+.||.+||.|++.|.-.- +..+-+..|-...+.++...
T Consensus 36 ~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~~~~~~~ 85 (147)
T cd07909 36 EAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAEELIEET 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHHHHHHhcc
Confidence 4466666666899999999999987653 34466666666666666533
No 313
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=36.15 E-value=2.1e+02 Score=25.08 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=43.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002856 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 190 (873)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLR 190 (873)
.+|..+..=+...|++.+.-|+++|.|+-.+.. .....+...+..|+-.+.+|+.=|+
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~-------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPP-------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366777788889999999999999999876621 3335677778888888888776554
No 314
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=36.08 E-value=5.6e+02 Score=27.30 Aligned_cols=161 Identities=22% Similarity=0.330 Sum_probs=85.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccc--cccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc---c
Q 002856 36 DNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS--EIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKA---F 110 (873)
Q Consensus 36 ~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~--eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKa---f 110 (873)
+|-..=-|.-++|.|-.|.|-.-|-.||.=+..+ +++++- -.+...+.+.+..|-.++..|-.-+|+.|... |
T Consensus 39 e~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~--K~l~~~i~~~~~~I~~~ik~~Ee~~k~~k~~~i~~~ 116 (215)
T PF07083_consen 39 ENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKI--KELIAPIDEASDKIDEQIKEFEEKEKEEKREKIKEY 116 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3434445677889999999999998888766665 333322 12445788888888888888877777766432 1
Q ss_pred cccccCCCCCCCchHHhHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHH-HHHHH
Q 002856 111 SKEGLGQQPKTDPKEKAKSETRDWLN------NLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH-KAHIM 183 (873)
Q Consensus 111 SkEGL~~~~k~Dp~ekek~E~~~wL~------~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierh-k~Hi~ 183 (873)
=.+= ...-.+|+..=++.-.-.||+ .++++|..++.....+++.+ ......|+.. .-+=-
T Consensus 117 ~~~~-~~~~~v~~~~fe~~~~~~wlnks~s~kk~~eei~~~i~~~~~~~~~~------------~~~~~~i~~~A~~~~l 183 (215)
T PF07083_consen 117 FEEM-AEEYGVDPEPFERIIKPKWLNKSYSLKKIEEEIDDQIDKIKQDLEEI------------KAAKQAIEEKAEEYGL 183 (215)
T ss_pred HHHH-HHHcCCChHHHhhhcchHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHcCC
Confidence 1110 011112332222112334533 34445555554444444333 1112122111 11111
Q ss_pred HHHHHHHhhhCCCCChhhhhhhhhHHHH
Q 002856 184 KLELILRLLDNDELSPEQVNDVKDLLED 211 (873)
Q Consensus 184 kLE~lLRlL~N~~l~pe~V~~ikddiey 211 (873)
...-.+|+|++|.==+|-+..|++|.++
T Consensus 184 ~~~~yi~~l~~g~~l~eil~~i~~d~~~ 211 (215)
T PF07083_consen 184 PADPYIRMLDYGKTLAEILKQIKEDRDF 211 (215)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2234578888876546666678877553
No 315
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=35.89 E-value=5.9e+02 Score=27.51 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=37.5
Q ss_pred HHHHHHHHhhh-hcccCCCCchhhHHHHHHH--HHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHh
Q 002856 146 IDSFEAELEGL-TVKKGKTRPPRLTHLETSI--TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (873)
Q Consensus 146 iE~~EaE~E~L-s~KK~K~~~~r~~~le~~i--erhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~ 215 (873)
.+.+++-+|+- +..|+| ++..+++++..+ +|..|+...|+.|+.+= .|..-.--+|-+-|--|+..
T Consensus 120 se~y~~aleK~l~l~~~k-k~~~~~ea~~~l~~~R~~F~~~~ldYv~~i~---~vq~kKkfefle~ll~~~~A 188 (207)
T cd07634 120 SEKYYSILEKHLNLSAKK-KESHLQRADTQIDREHQNFYEASLEYVFKIQ---EVQEKKKFEFVEPLLAFLQG 188 (207)
T ss_pred HhHHHHHHHHHHhccccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34445555552 333333 345666666655 78999999999999742 12222233455555555553
No 316
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=35.85 E-value=5.3e+02 Score=33.28 Aligned_cols=38 Identities=29% Similarity=0.246 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHh---hhc-----cccccccccCCCCCCCch
Q 002856 87 ARKLIEREMERFKICEK---ETK-----TKAFSKEGLGQQPKTDPK 124 (873)
Q Consensus 87 ~Rk~IE~~MErFK~vEK---e~K-----tKafSkEGL~~~~k~Dp~ 124 (873)
.|+++|.+-=+||+++. .+| .|.+.+-+|....++|+.
T Consensus 620 ~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d 665 (988)
T KOG2072|consen 620 KRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDAD 665 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHH
Confidence 46666666556665532 333 567777777666677763
No 317
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=35.75 E-value=97 Score=31.99 Aligned_cols=58 Identities=33% Similarity=0.432 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
+=++.|..|..+.-| +|-++|-=++=.+.|.. -.||.-++ |+.++..||....|+..|
T Consensus 46 kKmeVrekVq~~Lgr---veEetkrLa~ireeLE~--l~dP~RkE-----------v~~vRkkID~vNreLkpl 103 (159)
T PF04949_consen 46 KKMEVREKVQAQLGR---VEEETKRLAEIREELEV--LADPMRKE-----------VEMVRKKIDSVNRELKPL 103 (159)
T ss_pred HHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHh--hccchHHH-----------HHHHHHHHHHHHHHhhHH
Confidence 345666667666666 77777777777777753 23775443 334444455555555444
No 318
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=35.51 E-value=6.2e+02 Score=33.38 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=48.7
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCc--------hhHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNA--------NQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~--------nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (873)
++|..|.+++-+++..=...+...++++..+... .+.+|.|.-|-+--.||||.-+.-+.-+++
T Consensus 479 ~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~ 550 (1041)
T KOG0243|consen 479 ELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSS 550 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888877777777777777766554 567888888888888888888887777663
No 319
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=35.37 E-value=5.1e+02 Score=31.30 Aligned_cols=52 Identities=27% Similarity=0.339 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKET 105 (873)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~ 105 (873)
||++.|.+|+|..+.+|.=+.+ .|.++- . ....+-+..+.-++|=+.+.+|.
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~-~I~~~y-----~-df~~~~~~~~~L~~~~~~l~~eI 62 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHS-MINKKY-----S-DFSPSLQSAKDLIERSKSLAREI 62 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHH-----H-HHHHHHHhHHHHHHHHHHHHHHH
Confidence 7888888888888888876643 333332 1 23333334444466677777776
No 320
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.24 E-value=3.1e+02 Score=29.27 Aligned_cols=14 Identities=43% Similarity=0.313 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHH
Q 002856 84 LVDARKLIEREMER 97 (873)
Q Consensus 84 L~e~Rk~IE~~MEr 97 (873)
|...|..-|++|..
T Consensus 183 l~~~~~~~~~~~~~ 196 (239)
T cd07647 183 LEDARVEWESEHAT 196 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666654
No 321
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=35.23 E-value=40 Score=34.22 Aligned_cols=10 Identities=20% Similarity=0.395 Sum_probs=4.5
Q ss_pred CCCChhhhhh
Q 002856 195 DELSPEQVND 204 (873)
Q Consensus 195 ~~l~pe~V~~ 204 (873)
+-.+++-|..
T Consensus 95 kakn~~av~a 104 (155)
T PF06810_consen 95 KAKNPKAVKA 104 (155)
T ss_pred CCCCHHHHHH
Confidence 3344554443
No 322
>PF06729 CENP-R: Kinetochore component, CENP-R; InterPro: IPR009601 This family consists of mammalian nuclear receptor co-activator NRIF3 proteins. NRIF3 exhibits a distinct receptor specificity in interacting with and potentiating the activity of only TRs and RXRs but not other examined nuclear receptors. NRIF3 as a coregulator that possesses both transactivation and transrepression domains and/or functions. Collectively, the NRIF3 family of coregulators may play dual roles in mediating both positive and negative regulatory effects on gene expression [].
Probab=35.22 E-value=89 Score=31.70 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=44.7
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHH---------HHHHHHHHHHHhHHHHHHh
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEA---------DLKKEIKKLQRYRDQIKTW 65 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~---------DLKKEIKKLQR~RDQIKtW 65 (873)
.|++-++-||.--++.|=+||+.+.+...-.---+||+ +||.|++|-|.|=-++..|
T Consensus 59 D~fm~L~SkvekS~eeime~~qnL~slQALeGsreLEnLiGvs~sSc~Lk~ElqKTkeLmtkv~k~ 124 (139)
T PF06729_consen 59 DEFMVLLSKVEKSLEEIMEIRQNLSSLQALEGSRELENLIGVSCSSCDLKRELQKTKELMTKVEKQ 124 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999999987655443345665 8999999988776655544
No 323
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=35.16 E-value=80 Score=34.25 Aligned_cols=52 Identities=27% Similarity=0.443 Sum_probs=36.2
Q ss_pred hhHHHHhhhHHHhHHHHHHHH----HHh----hcC---CCchhHHHHHHHHHHHHHHHHHhHHHH
Q 002856 9 GEIDRVLKKVQEGVDVFDSIW----NKV----YDT---DNANQKEKFEADLKKEIKKLQRYRDQI 62 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~----~K~----~~a---~n~nQKEKlE~DLKKEIKKLQR~RDQI 62 (873)
+||+.+|.+=+|..+...+ | .|+ ... .+.+ -+-|..-||+||+.|.+-|+.+
T Consensus 144 ~eve~il~~~e~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~-~~sF~~~l~~ql~~l~~~r~e~ 206 (219)
T PRK13415 144 KEIEEILAQHEERLESKAE-WSRWGQKLRDQWKGKSKQKQTT-LPSFSALLKEELKELKEKRSEG 206 (219)
T ss_pred HHHHHHHHHHHHhhhhhhc-hHHHHHHHHHhhhccccCCCCC-CccHHHHHHHHHHHHHHHHHHH
Confidence 6899999988887655444 4 221 111 2222 3779999999999999988876
No 324
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=35.13 E-value=6.1e+02 Score=27.96 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 002856 176 TRHKAHIMKLELILRLL 192 (873)
Q Consensus 176 erhk~Hi~kLE~lLRlL 192 (873)
.+++..+..|+..|.+|
T Consensus 257 ~~~~~~l~~~~~~L~~l 273 (319)
T PF02601_consen 257 SQKRQRLERLEARLEAL 273 (319)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 34444444444444433
No 325
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=34.88 E-value=3.4e+02 Score=34.68 Aligned_cols=124 Identities=21% Similarity=0.301 Sum_probs=0.0
Q ss_pred hHHHHhhhHHH---hHHHHHHHHHHhhcCCCchhHHHHHHHHHH-------HHHHHHHhHHHHHHhhccccccccccchh
Q 002856 10 EIDRVLKKVQE---GVDVFDSIWNKVYDTDNANQKEKFEADLKK-------EIKKLQRYRDQIKTWIQSSEIKDKKVSAS 79 (873)
Q Consensus 10 EIDr~lKKV~E---Gve~Fd~i~~K~~~a~n~nQKEKlE~DLKK-------EIKKLQR~RDQIKtW~~s~eIKDK~~~~~ 79 (873)
+||.+.|||.- --+.-+..|+++..+ -|+|-.+|-. |.|+|+|.-+-...=-.--|-.+|.
T Consensus 876 ~id~lv~~IK~~~~tq~~~~~~~d~~~~~-----~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER~rrEaeek~---- 946 (1259)
T KOG0163|consen 876 QIDDLVKKIKMPRITQREMNSEYDVAVKN-----YEKLVKRLDSKEQQQIEELERLRKIQELAEAERKRREAEEKR---- 946 (1259)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHH-----HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH----
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhc
Q 002856 80 YEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQID-SFEAELEGLTV 158 (873)
Q Consensus 80 ~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE-~~EaE~E~Ls~ 158 (873)
..=.|..|..|.+||- +-|.-+|-+.--++-=..|..+++ +++.|.|.-..
T Consensus 947 --rre~ee~k~~k~e~e~--------------------------kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k 998 (1259)
T KOG0163|consen 947 --RREEEEKKRAKAEMET--------------------------KRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAK 998 (1259)
T ss_pred --HHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccCCCCchhhHH
Q 002856 159 KKGKTRPPRLTH 170 (873)
Q Consensus 159 KK~K~~~~r~~~ 170 (873)
++.+-.++|+++
T Consensus 999 ~q~~~Eqer~D~ 1010 (1259)
T KOG0163|consen 999 RQNQLEQERRDH 1010 (1259)
T ss_pred HHhHHHHHHHHH
No 326
>PF00489 IL6: Interleukin-6/G-CSF/MGF family; InterPro: IPR003573 Interleukin-6 (IL6), also refered to as B-cell stimulatory factor-2 (BSF-2) and interferon beta-2, is a cytokine involved in a wide variety of biological functions []. It plays an essential role in the final differentiation of B-cells into IG-secreting cells, as well as inducing myeloma/plasmacytoma growth, nerve cell differentiation and, in hepatocytes, acute phase reactants [, ]. A number of other cytokines may be grouped with IL6 on the basis of sequence similarity [, , ]: these include granulocyte colony-stimulating factor (GCSF) and myelomonocytic growth factor (MGF). GCSF acts in hematopoiesis by affecting the production, differentiation and function of 2 related white cell groups in the blood []. MGF also acts in hematopoiesis, stimulating proliferation and colony formation of normal and transformed avian cells of the myeloid lineage. Cytokines of the IL6/GCSF/MGF family are glycoproteins of about 170 to 180 amino acid residues that contains four conserved cysteine residues involved in two disulphide bonds []. They have a compact, globular fold (similar to other interleukins), stabilised by the 2 disulphide bonds. One half of the structure is dominated by a 4 alpha-helix bundle with a left-handed twist []: the helices are anti-parallel, with 2 overhand connections, which fall into a 2-stranded anti-parallel beta-sheet. The fourth alpha-helix is important to the biological activity of the molecule []. It has been said [] that this family can be extended by the adjunction of LIF and OSM (see the relevant entry IPR001581 from INTERPRO) which seem to be structurally related.; GO: 0005125 cytokine activity, 0006955 immune response, 0005576 extracellular region; PDB: 1P9M_B 2IL6_A 1IL6_A 1ALU_A 3QWR_B 3DUH_C 3D85_C 3D87_C 1BGC_A 2L3Y_A ....
Probab=34.88 E-value=1.5e+02 Score=30.14 Aligned_cols=53 Identities=17% Similarity=0.314 Sum_probs=34.9
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH-HHhHHHHHHh
Q 002856 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKTW 65 (873)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKL-QR~RDQIKtW 65 (873)
-|.||.|+..|+-.|..+++-+++. ...-++.. .+|+.-++-| +-+++++|.+
T Consensus 52 ~e~CL~ri~~GL~~yq~lL~~l~~~-~~~~~~~v-~~Lq~~~~~L~~~i~~~~~~~ 105 (154)
T PF00489_consen 52 KETCLSRIHSGLQEYQILLKYLQGE-FPGLKENV-ESLQLDTKDLAQTIKQKMKNP 105 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS-STTTHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CccchhHH-HHHHHHHHHHHHHHHHHhhcc
Confidence 3789999999999999999877654 33333333 3455555554 4445555553
No 327
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=34.72 E-value=13 Score=44.18 Aligned_cols=65 Identities=22% Similarity=0.428 Sum_probs=0.0
Q ss_pred HHHHHHHH-HHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc----ccccCCCC
Q 002856 47 DLKKEIKK-LQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFS----KEGLGQQP 119 (873)
Q Consensus 47 DLKKEIKK-LQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafS----kEGL~~~~ 119 (873)
.||++|++ +..+++.|-.+..+.+...++. ...+.+.+.| =+-|+.++++.+-+.|. ..|+.-.+
T Consensus 88 ~f~~~m~~lie~l~~~ip~~Fese~y~~~~~--~i~~~~~~~~------~~~~~~l~~~A~~~gf~l~~t~~G~~~~P 157 (509)
T PF13654_consen 88 KFKKDMEELIEELKEEIPAAFESEEYQERKE--EIEEEFQEKR------EKLLEELEEEAEEKGFALKRTPSGFVFIP 157 (509)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc--cccccccccc------ccccccccccccccccccccccccccccc
Confidence 47777777 4677899999999999887771 1111112222 23366678888888774 56665444
No 328
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=34.55 E-value=1.9e+02 Score=26.83 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCC----CCChhhhhhhhhHHHHH
Q 002856 167 RLTHLETSITRHKAHIMKLELILRLLDND----ELSPEQVNDVKDLLEDY 212 (873)
Q Consensus 167 r~~~le~~ierhk~Hi~kLE~lLRlL~N~----~l~pe~V~~ikddieyY 212 (873)
-..+|+..++-.+|-+.-||.-++.++.+ .|++++|..-|..|...
T Consensus 40 ~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~ 89 (97)
T PF09177_consen 40 LKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAI 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHH
Confidence 34678888999999999999999999998 78888888777666543
No 329
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=34.48 E-value=7.2e+02 Score=28.30 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 127 AKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 127 ek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
+-.|+..-|+.+|.++..++++..+.++..
T Consensus 102 el~e~Ekvlk~aIq~i~~~~q~~~~~Lnnv 131 (338)
T KOG3647|consen 102 ELLEVEKVLKSAIQAIQVRLQSSRAQLNNV 131 (338)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888888888888877777654
No 330
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=34.36 E-value=65 Score=27.02 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhhCCCCChhhhh-hhhhHHHHHHHhC
Q 002856 180 AHIMKLELILRLLDNDELSPEQVN-DVKDLLEDYVERN 216 (873)
Q Consensus 180 ~Hi~kLE~lLRlL~N~~l~pe~V~-~ikddieyYve~n 216 (873)
-.+.+||.|++.|+|++++-|+.- ..++-++.+-.++
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~ 40 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQ 40 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999966554 4666666655443
No 331
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=34.23 E-value=6.6e+02 Score=29.02 Aligned_cols=125 Identities=23% Similarity=0.394 Sum_probs=63.8
Q ss_pred ccccchhhhHHHHhhhHHHhHHHHHH-----HHHHhhcCCCchhHHHHHHHHHH---HHHHHHHhHHHHHHhhccccccc
Q 002856 2 GASRKLQGEIDRVLKKVQEGVDVFDS-----IWNKVYDTDNANQKEKFEADLKK---EIKKLQRYRDQIKTWIQSSEIKD 73 (873)
Q Consensus 2 aa~RKLQ~EIDr~lKKV~EGve~Fd~-----i~~K~~~a~n~nQKEKlE~DLKK---EIKKLQR~RDQIKtW~~s~eIKD 73 (873)
.+.+.|...|+.++.++..-+..... +..+++.+ ..-|.|||..|++ ||..+++..+.++. .|.|
T Consensus 218 ~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et--~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~-----ai~~ 290 (384)
T PF03148_consen 218 QSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHET--QEAKNELEWQLKKTLQEIAEMEKNIEDLEK-----AIRD 290 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HHHH
Confidence 45678889999999988877654432 11222221 2237777777755 44444444444432 3444
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002856 74 KKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 153 (873)
Q Consensus 74 K~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~ 153 (873)
|.. +| |+.++++|. ..| .-|... =.|+....-.+-..-|...|..|+.++...++.+
T Consensus 291 k~~------~l----kvaqTRL~~----------R~~-RP~vEl--crD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l 347 (384)
T PF03148_consen 291 KEG------PL----KVAQTRLEN----------RTQ-RPNVEL--CRDPPQYGLIEEVKELRESIEALQEKLDEAEASL 347 (384)
T ss_pred HHh------hH----HHHHHHHhh----------Hhc-CCchHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 431 22 333333332 222 111110 0133333332234667777777777777777776
Q ss_pred hhh
Q 002856 154 EGL 156 (873)
Q Consensus 154 E~L 156 (873)
..|
T Consensus 348 ~~L 350 (384)
T PF03148_consen 348 QKL 350 (384)
T ss_pred HHH
Confidence 555
No 332
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=34.12 E-value=3.2e+02 Score=28.85 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 002856 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGL 115 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL 115 (873)
.+.+.-|.||.+|+.| .++|.++=+
T Consensus 62 ~~s~~~r~i~~~~~~~--------~~~~~~~li 86 (219)
T PF08397_consen 62 QISEVHRRIENELEEV--------FKAFHSELI 86 (219)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 4455677888888887 667766544
No 333
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=34.02 E-value=5.3e+02 Score=32.67 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=12.8
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhh
Q 002856 11 IDRVLKKVQEGVDVFDSIWNKVY 33 (873)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~~K~~ 33 (873)
|+|.-+.+.++-..++.+.++++
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHH
Confidence 44445555555556666666654
No 334
>PRK04406 hypothetical protein; Provisional
Probab=33.98 E-value=1.4e+02 Score=27.20 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 138 LVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (873)
Q Consensus 138 ~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (873)
+|+.|+..|+.||..+-=+ ...|++|...+-+..-.|.+|+.-|++|
T Consensus 5 ~~~~le~Ri~~LE~~lAfQ--------E~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQ--------EQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred hHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666554322 2345666777777777777777777776
No 335
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=33.97 E-value=96 Score=29.45 Aligned_cols=29 Identities=7% Similarity=0.071 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 002856 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (873)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~ 66 (873)
..+.+.++.+|...++.|.+++.+++.|.
T Consensus 79 ~~~~~~~~~~l~~~~~~L~~l~~~L~~~~ 107 (107)
T cd01111 79 EACLAQLRQKIEVRRAALNALTTQLAEMA 107 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35788999999999999999999999984
No 336
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=33.91 E-value=5.7e+02 Score=30.38 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 002856 171 LETSITRHKAHIMKLELILRLLD 193 (873)
Q Consensus 171 le~~ierhk~Hi~kLE~lLRlL~ 193 (873)
++..++.++-.|.+|+.-|+.|.
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444555555554444
No 337
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=33.84 E-value=1.8e+02 Score=30.19 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=38.7
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 002856 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~ 66 (873)
+.|+.|++--+-+.....++.++..-.. +-+.++..+|.-+++|..+|.-|.+-+
T Consensus 9 ~~d~~L~~~L~~l~~hq~~~~~I~~L~~--e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 9 EADDELSSALEELQEHQENQARIQQLRA--EIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555556666777655432 346677889999999999999999988
No 338
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=33.81 E-value=1.7e+02 Score=25.67 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHh
Q 002856 40 QKEKFEADLKKEIKKLQRYRDQIKTW 65 (873)
Q Consensus 40 QKEKlE~DLKKEIKKLQR~RDQIKtW 65 (873)
.+...|..|.---.||+.+|.+|+..
T Consensus 43 ~~~~~~~~l~es~~ki~~Lr~~L~k~ 68 (72)
T cd00089 43 LLAEAEQMLRESKQKLELLKMQLEKL 68 (72)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555566666666666543
No 339
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=33.79 E-value=8.2e+02 Score=28.52 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 002856 139 VSELESQIDSFEAELEGL 156 (873)
Q Consensus 139 IdeL~~QiE~~EaE~E~L 156 (873)
|-.|++|++.++..+...
T Consensus 277 v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 277 VIATKREIAQLEEQKEEE 294 (498)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345555555555555443
No 340
>PRK09546 zntB zinc transporter; Reviewed
Probab=33.79 E-value=3.4e+02 Score=30.02 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002856 134 WLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (873)
Q Consensus 134 wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N 194 (873)
-+...+++|+.++|.+|.++-. .......++-.|+..+-+.+-++.-+..++..|.+
T Consensus 154 ~~~~~l~~i~~~ld~lE~~l~~----~~~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~ 210 (324)
T PRK09546 154 HASEFIEELHDKIIDLEDNLLD----QQIPPRGELALLRKQLIVMRRYMAPQRDVFARLAS 210 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555554421 11112258888999888888888888888866654
No 341
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.74 E-value=5e+02 Score=27.61 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 128 KSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 128 k~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
+.+-...|...|+.++++|+....+++.+
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~ 96 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEEL 96 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777777766666665
No 342
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=33.64 E-value=1.5e+02 Score=30.07 Aligned_cols=82 Identities=26% Similarity=0.300 Sum_probs=50.7
Q ss_pred HHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc------CCCCchhhHHHHHH
Q 002856 101 CEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK------GKTRPPRLTHLETS 174 (873)
Q Consensus 101 vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK------~K~~~~r~~~le~~ 174 (873)
+||+--+-.=.++.+.. |. +-.|.+ +.=|..-|+.+..-...++.|+..++.-| -.+.+.|+.+|+..
T Consensus 29 LEreLe~~q~~~e~~~~----da-En~k~e-ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 29 LERELEMSQENKECLIL----DA-ENSKAE-IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHhHHHHHH----HH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555543 22 333443 33477788888888888888888885322 12345678888877
Q ss_pred HHHHHHHHHHHHHH
Q 002856 175 ITRHKAHIMKLELI 188 (873)
Q Consensus 175 ierhk~Hi~kLE~l 188 (873)
..-...||..+|.-
T Consensus 103 ~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 103 NSSLENLLQEKEQE 116 (140)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777777777765
No 343
>PRK14011 prefoldin subunit alpha; Provisional
Probab=33.63 E-value=4.6e+02 Score=26.71 Aligned_cols=32 Identities=28% Similarity=0.272 Sum_probs=27.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
|+...++.+||+.-|++|++..+.+..-++.+
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~ 114 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEEL 114 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999988888888777665
No 344
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=33.58 E-value=1.7e+02 Score=28.57 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=0.0
Q ss_pred cccchhhhHHHHhhhHHHhHHHHHHHHHHhhcC
Q 002856 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDT 35 (873)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a 35 (873)
.+|+-|.||-.+.-.|.+++..||.-|..|+.-
T Consensus 18 ~~r~~qEEvASLq~i~k~tv~~ye~~~~~LeqE 50 (106)
T PF03528_consen 18 VQRQWQEEVASLQAILKETVSEYETQWSLLEQE 50 (106)
T ss_dssp ---------------------------------
T ss_pred HHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 468889999999999999999998888876544
No 345
>PRK10869 recombination and repair protein; Provisional
Probab=33.41 E-value=9.5e+02 Score=29.14 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 002856 510 REKFLQRLQQV 520 (873)
Q Consensus 510 ~ek~lq~~qqv 520 (873)
++++.+.+..+
T Consensus 470 ~~~v~~~l~~l 480 (553)
T PRK10869 470 AAVVGKLLRQL 480 (553)
T ss_pred HHHHHHHHHHH
Confidence 44555555554
No 346
>PRK11281 hypothetical protein; Provisional
Probab=33.41 E-value=1.3e+03 Score=30.78 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002856 44 FEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKT 107 (873)
Q Consensus 44 lE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~Kt 107 (873)
||..|...-.-||....++-+|-+. .+........++..|.+...|=.++.+.-+.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~Nsq--------Li~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQ--------LVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7777777777777777776665221 1122235666677777777777777776655
No 347
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=33.30 E-value=1e+02 Score=35.53 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002856 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 195 (873)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~ 195 (873)
.+...-|+.-|++|+.+|+.++..++... +...++.+++..++++.-.|..++.++.-=.++
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~-----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~ 302 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP-----KKKNKLKELEEQLASLEKRIEEAEELIAEYGDE 302 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 44455566666667777777776666543 333456778888888888888888877644433
No 348
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.09 E-value=8.7e+02 Score=31.89 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 002856 166 PRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (873)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~ 196 (873)
+.+-+....|-+.+.-+.+|.-.|+.+.+..
T Consensus 518 et~yDrdqTI~KfRelva~Lqdqlqe~~dq~ 548 (1243)
T KOG0971|consen 518 ETVYDRDQTIKKFRELVAHLQDQLQELTDQQ 548 (1243)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555566667777777777777666543
No 349
>PRK13411 molecular chaperone DnaK; Provisional
Probab=32.95 E-value=1.5e+02 Score=36.23 Aligned_cols=21 Identities=5% Similarity=0.151 Sum_probs=14.1
Q ss_pred HHHHHHHHhHHHHHHhhcccc
Q 002856 50 KEIKKLQRYRDQIKTWIQSSE 70 (873)
Q Consensus 50 KEIKKLQR~RDQIKtW~~s~e 70 (873)
.|-++++..-++++.|+..++
T Consensus 555 ~er~~i~~~l~~~~~wL~~~~ 575 (653)
T PRK13411 555 ELKQRAEQKVEQLEAALTDPN 575 (653)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 344566666777888887754
No 350
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=32.87 E-value=2.5e+02 Score=27.74 Aligned_cols=83 Identities=19% Similarity=0.350 Sum_probs=43.3
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHH---hhccccccccccchhhH
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKT---WIQSSEIKDKKVSASYE 81 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKt---W~~s~eIKDK~~~~~~~ 81 (873)
|+|..||++.-..|..--+..+..-.++... .+.--.++..++.+.++|...+|.+.. |+.. ++
T Consensus 62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~--~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~--~~--------- 128 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKEQLEELERELASA--EEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ--RK--------- 128 (151)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---------
Confidence 5566666665555554444444443333321 222234566666666777777776543 3332 11
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002856 82 QALVDARKLIEREMERFKI 100 (873)
Q Consensus 82 ~~L~e~Rk~IE~~MErFK~ 100 (873)
....--.|..|.+|++.|.
T Consensus 129 tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 129 TQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 1344445566778887763
No 351
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=32.86 E-value=4.3e+02 Score=30.01 Aligned_cols=69 Identities=17% Similarity=0.271 Sum_probs=40.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----------c-----------cCCCC---------chhhHHHHHH
Q 002856 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLTV-----------K-----------KGKTR---------PPRLTHLETS 174 (873)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~-----------K-----------K~K~~---------~~r~~~le~~ 174 (873)
.-|.--..||...+.....|||.+|.|+-.+.. . |.=.. ..+.++|++.
T Consensus 91 q~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ek 170 (307)
T PF10481_consen 91 QVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEK 170 (307)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHH
Confidence 444556667777777777777777766644410 0 10000 1366677766
Q ss_pred HHHHHHHHHHHHHHHHhhhC
Q 002856 175 ITRHKAHIMKLELILRLLDN 194 (873)
Q Consensus 175 ierhk~Hi~kLE~lLRlL~N 194 (873)
..+--.--.+||.-++.|.-
T Consensus 171 ynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 171 YNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred HHHHHHHHhhHHHHHHHHhc
Confidence 65555556678887777763
No 352
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=32.74 E-value=6.4e+02 Score=26.97 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=11.5
Q ss_pred hhhhHHHHhhhHHHhHHHHHH
Q 002856 7 LQGEIDRVLKKVQEGVDVFDS 27 (873)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~ 27 (873)
|+.|||..-.++.+.-...+.
T Consensus 6 l~~eld~~~~~~~~~~~~l~~ 26 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKE 26 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666665555555444444
No 353
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=32.67 E-value=2.5e+02 Score=25.18 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 126 KAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
......+.+|...|..+..+++.++.+++.+
T Consensus 48 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 78 (123)
T PF02050_consen 48 RNYQRYISALEQAIQQQQQELERLEQEVEQA 78 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888889999999999999998876
No 354
>PF09074 Mer2: Mer2; InterPro: IPR015159 Meiotic recombination 2 protein (Mer2) also known as Rec107, forms part of a complex that is required for meiotic double strand DNA break formation. Mer2 increases in abundance and is phosphorylated during the prophase phase of cell division []. MER2 is not required for mitosis and mitotic DNA repair mechanisms and is a component of the MER2-MEI4-REC114 complex which seems to be required for meiotic double-strand break (DSB) formation []. ; GO: 0007131 reciprocal meiotic recombination, 0000794 condensed nuclear chromosome
Probab=32.60 E-value=3.2e+02 Score=29.30 Aligned_cols=26 Identities=8% Similarity=0.266 Sum_probs=20.8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002856 124 KEKAKSETRDWLNNLVSELESQIDSF 149 (873)
Q Consensus 124 ~ekek~E~~~wL~~~IdeL~~QiE~~ 149 (873)
+..+-....+++.+++-....|+|.+
T Consensus 143 ~q~~~~ks~~~tq~~l~N~~~QLe~~ 168 (190)
T PF09074_consen 143 RQQKIMKSFDCTQEMLFNVSCQLEDM 168 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555678889999999999999887
No 355
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.60 E-value=5.8e+02 Score=33.53 Aligned_cols=149 Identities=23% Similarity=0.286 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH----hhhccccccccccC
Q 002856 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICE----KETKTKAFSKEGLG 116 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vE----Ke~KtKafSkEGL~ 116 (873)
..+++.+|++=.++|-.+|--|.. |-.|- .+|+..-+.+|.+...|+.== +|++|. .+|=..
T Consensus 673 ~~~~~~~~~~l~~~L~~~r~~i~~------~~~~i------~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~--k~e~~~ 738 (1200)
T KOG0964|consen 673 VNESRSELKELQESLDEVRNEIED------IDQKI------DQLNNNMQKVENDRNAFKREHEKLKRELNTI--KGEKSR 738 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH------HHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh--hhHHHH
Confidence 445555555555555555544432 21111 267777777888877776421 222221 111111
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 002856 117 QQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (873)
Q Consensus 117 ~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~ 196 (873)
.+.-+.|+. ....=|+.-+..+..|.+.||+|+-.--. .+-..+ ....+...+-.|.+|-.=||.|-++.
T Consensus 739 v~~s~~~k~----~~Le~i~~~l~~~~~~~~~~e~el~sel~-----sqLt~e-e~e~l~kLn~eI~~l~~kl~~~~~er 808 (1200)
T KOG0964|consen 739 VQESLEPKG----KELEEIKTSLHKLESQSNYFESELGSELF-----SQLTPE-ELERLSKLNKEINKLSVKLRALREER 808 (1200)
T ss_pred HHHHhhHHH----HHHHHHHHHHHHHHHHHHhHHHHHhHHHH-----hhcCHH-HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 111112222 22233445666677777777777532100 000111 23345566667777777888888877
Q ss_pred CChhhhhhhhhHHHHHHHhC
Q 002856 197 LSPEQVNDVKDLLEDYVERN 216 (873)
Q Consensus 197 l~pe~V~~ikddieyYve~n 216 (873)
++ |+-+|..|++++..|
T Consensus 809 ~~---~~~rk~~le~~l~~k 825 (1200)
T KOG0964|consen 809 ID---IETRKTALEANLNTK 825 (1200)
T ss_pred HH---HHHHHHHHHHHHHHH
Confidence 76 778888999998766
No 356
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=32.59 E-value=6.9e+02 Score=27.24 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 126 KAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
+-|.++..|.+.-|++|+.++.....++..+
T Consensus 184 ~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~ 214 (312)
T PF00038_consen 184 KNREELEEWYQSKLEELRQQSEKSSEELESA 214 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccccccccccccccccchh
Confidence 5667889999999999999998888887766
No 357
>PLN03223 Polycystin cation channel protein; Provisional
Probab=32.52 E-value=5.8e+02 Score=34.76 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=27.2
Q ss_pred HhHHHHHHhhccccccccccchhhHHHHHHHHHHH-----HHHH----HHHHHHHhhh
Q 002856 57 RYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLI-----EREM----ERFKICEKET 105 (873)
Q Consensus 57 R~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~I-----E~~M----ErFK~vEKe~ 105 (873)
|+|||++.|-.-++-++.. +.-+.|-||+. |-.| |-||.|=+|+
T Consensus 1464 ~~~~~lr~w~ge~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~~l~~v~~~c~~~~ 1516 (1634)
T PLN03223 1464 RVRRQLRIWKGENPDEEEE-----EAFREEKEKVFTYLNKELDEAGLKRVLRRCVIET 1516 (1634)
T ss_pred HHHHHHHHhcCCCCCcccc-----hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 8999999999877655322 33566666654 2334 3456665554
No 358
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.34 E-value=1.7e+02 Score=25.68 Aligned_cols=48 Identities=15% Similarity=0.350 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002856 139 VSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (873)
Q Consensus 139 IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N 194 (873)
|++|+..+..++..++.+. ...++|...+++.+.-|.+|=.|..++.|
T Consensus 2 i~elEn~~~~~~~~i~tvk--------~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 2 IDELENELPRIESSINTVK--------KENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566666666666665551 23455666666666666666666666655
No 359
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=32.31 E-value=3.8e+02 Score=29.23 Aligned_cols=71 Identities=27% Similarity=0.448 Sum_probs=38.3
Q ss_pred HHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHH
Q 002856 54 KLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRD 133 (873)
Q Consensus 54 KLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~ 133 (873)
|++.....|..|-..-+ .+...-.+..+.|..+|+||.. || -+.=|.-...
T Consensus 160 K~~~a~~Ev~e~e~k~~--------~a~~~fe~is~~ik~El~rFe~-er--------------------~~Dfk~~v~~ 210 (234)
T cd07665 160 KLQQAKDEIAEWESRVT--------QYERDFERISATVRKEVIRFEK-EK--------------------SKDFKNHIIK 210 (234)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH-HH--------------------HHHHHHHHHH
Confidence 55555555555543322 1222455566777778888721 00 0112233667
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002856 134 WLNNLVSELESQIDSFEAEL 153 (873)
Q Consensus 134 wL~~~IdeL~~QiE~~EaE~ 153 (873)
||...|+.=++-||.+|.=+
T Consensus 211 fles~ie~qke~ie~We~fl 230 (234)
T cd07665 211 YLETLLHSQQQLVKYWEAFL 230 (234)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 77777777766677776543
No 360
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=32.25 E-value=3.4e+02 Score=25.40 Aligned_cols=57 Identities=16% Similarity=0.416 Sum_probs=36.8
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcccccc
Q 002856 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK 72 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIK 72 (873)
+++..|+++.--|+.++.-.+......... ++|..||.+|+--|..+-.=+...+..
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~------~~~e~ei~~l~~dr~rLa~eLD~~~ar 61 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR------DELEEEIQRLDADRSRLAQELDQAEAR 61 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence 466677777777766665554443322222 788889999998888777666555444
No 361
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=32.25 E-value=15 Score=28.88 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.2
Q ss_pred hhhhhhhhHHHHHHHhCCCCCC
Q 002856 200 EQVNDVKDLLEDYVERNQDDFE 221 (873)
Q Consensus 200 e~V~~ikddieyYve~nqddf~ 221 (873)
+.+++|-|+|+..+|.|.++|+
T Consensus 3 ~~~D~lLDeId~vLe~NAe~FV 24 (33)
T TIGR03687 3 EGVDDLLDEIDGVLESNAEEFV 24 (33)
T ss_pred chHHHHHHHHHHHHHHhHHHHH
Confidence 5789999999999999988764
No 362
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=32.22 E-value=1e+03 Score=29.97 Aligned_cols=62 Identities=26% Similarity=0.373 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
.+.+|-++||..=..| +.|-+++++ ||...++.+-. -.+=|+..|-....+|++|..+++.+
T Consensus 276 vv~ky~~~ve~ar~~F-~~EL~si~p-----~l~~~d~~~~L------~~~dln~liahah~rvdql~~~l~d~ 337 (657)
T KOG1854|consen 276 VVGKYSELVEKARHQF-EQELESILP-----GLSLADKEENL------SEDDLNKLIAHAHTRVDQLQKELEDQ 337 (657)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcC-----CCchhhhhhhc------cHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777778887775555 456666666 77654432211 11234455555566666666666553
No 363
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.19 E-value=9e+02 Score=28.52 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCC
Q 002856 173 TSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQ 217 (873)
Q Consensus 173 ~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~nq 217 (873)
...++.+.++.+++. .+..+++.-+..|.+.+-
T Consensus 449 ~i~~~~~~e~~~f~~------------~~~~d~~~~~~~~~d~~i 481 (503)
T KOG2273|consen 449 EISERIRAELERFEE------------SRRQDFKESLKKYADLHV 481 (503)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 444555555555554 555566666666666543
No 364
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=32.09 E-value=6.4e+02 Score=26.73 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccccccc
Q 002856 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKK 75 (873)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~eIKDK~ 75 (873)
+|-..+++|...-+.+.+.....+.||.+
T Consensus 80 ~l~~~l~~l~~~~~e~~~Yy~~k~Y~~D~ 108 (276)
T PF12889_consen 80 ELLPALKELYPLINELDSYYDSKDYKDDN 108 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHTT-
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcCch
Confidence 55556666777777777776666666444
No 365
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=31.83 E-value=8.1e+02 Score=27.83 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHH
Q 002856 166 PRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 214 (873)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve 214 (873)
.|.+..+.++.--.-|..+|+.+++. .+....+=+.++.||.
T Consensus 98 ~R~~~~~~Fl~~~~qh~q~L~~~~~n-------~~~~~~~~~~~~~~V~ 139 (289)
T PF05149_consen 98 KRRTAAEEFLQAASQHKQRLRRCEEN-------CDRALSCAESLEEYVQ 139 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 46667777887778888888888774 3455555556666665
No 366
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=31.80 E-value=88 Score=35.20 Aligned_cols=50 Identities=24% Similarity=0.159 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002856 137 NLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 190 (873)
Q Consensus 137 ~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLR 190 (873)
-.|++|++-|-+-..|+|+.+..+.|.+ +.++..+.|.+-|.+|=|.|-|
T Consensus 5 ~~~~~~~~~i~k~nee~~~~~~~~~k~~----e~~qkl~sr~~~~~ekke~i~r 54 (359)
T KOG4398|consen 5 MRIEQLKQTICKGNEEMEKNSEGLLKTK----EKNQKLYSRAQRHQEKKEKIQR 54 (359)
T ss_pred HHHHHHHHHHhcCcHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666665544333332 4455555566666666665555
No 367
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=31.79 E-value=3.9e+02 Score=26.18 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=25.8
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcccccccc
Q 002856 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK 74 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK 74 (873)
+++++|....+|-+.-..+=++.. .-..+-+..+.+|+++.++||+.+. .++..+.+.+
T Consensus 23 d~~~v~~~~~~~k~~~~~l~~~~~--~~~~~l~~~~~el~~~~~~l~~~~~----~ls~~~~~~~ 81 (158)
T PF03938_consen 23 DVDKVFQESPAGKDAQAKLQEKFK--ALQKELQAKQKELQKLQQKLQSQKA----TLSEEERQKR 81 (158)
T ss_dssp -HHHHHHHHHHHHTHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTS--------SSHHHHHH
T ss_pred eHHHHHHhCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhh----ccchhHHHHH
Confidence 456666666655544443333321 0122334445555555555555433 5555555443
No 368
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=31.65 E-value=1.1e+02 Score=37.35 Aligned_cols=34 Identities=32% Similarity=0.356 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc-cccccccC
Q 002856 83 ALVDARKLIEREMERFKICEKETKTK-AFSKEGLG 116 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEKe~KtK-afSkEGL~ 116 (873)
.+..++..++.+.+++++.++-.+|+ .|-=+|-.
T Consensus 248 ~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~GWv 282 (646)
T PRK05771 248 ELLALYEYLEIELERAEALSKFLKTDKTFAIEGWV 282 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEe
Confidence 55668888888889999888877765 45555654
No 369
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=31.65 E-value=3e+02 Score=23.75 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccccccc
Q 002856 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD 73 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKD 73 (873)
.+.++.+...-+.+=+.+=++++.+..+.|+++
T Consensus 22 ~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~~~ 54 (77)
T PF03993_consen 22 FEEQDAEREENLEKKEALIEEAEALAESEDWKE 54 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 344555555566667778889999999888665
No 370
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=31.56 E-value=1.6e+02 Score=29.62 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhh
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQV 202 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V 202 (873)
..++|.++++.|+.=|+.-+.| .+.......-+..+|+.|.++|....|+++++
T Consensus 22 ~~e~Lee~~ekl~~vv~er~~~------------------~~~~~~~~~er~~~l~~i~~~~~~~Git~eeL 75 (134)
T PRK10328 22 SIDVLEEMLEKFRVVTKERREE------------------EEQQQRELAERQEKINTWLELMKADGINPEEL 75 (134)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 4445555555555555444443 33344455567789999999999999998876
No 371
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=31.41 E-value=1.2e+02 Score=33.87 Aligned_cols=48 Identities=19% Similarity=0.410 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcccccc-ccccchhhHHHHHHHHHHHHHHHH
Q 002856 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIK-DKKVSASYEQALVDARKLIEREME 96 (873)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~eIK-DK~~~~~~~~~L~e~Rk~IE~~ME 96 (873)
+||-++|+.-=+||....+-|-.|-=..|-| +|. .+.-+|-|+++-=|
T Consensus 180 ~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~-------LMAKCR~L~qENeE 228 (330)
T KOG2991|consen 180 LRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKM-------LMAKCRTLQQENEE 228 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHH-------HHHHHHHHHHHHHH
Confidence 5677777777789999999999999999999 555 55678888887544
No 372
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=31.25 E-value=1.9e+02 Score=29.12 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCChhhh
Q 002856 173 TSITRHKAHIMKLELILRLLDNDELSPEQV 202 (873)
Q Consensus 173 ~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V 202 (873)
.......-+..+|+.+..+|....|+++++
T Consensus 46 ~~~~~~~er~~kl~~~r~~m~~~Gis~~eL 75 (135)
T PRK10947 46 AAAAEVEERTRKLQQYREMLIADGIDPNEL 75 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 334444557779999999999999988876
No 373
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=31.20 E-value=6.1e+02 Score=26.21 Aligned_cols=53 Identities=25% Similarity=0.436 Sum_probs=33.8
Q ss_pred CchhhHHHHHHHHHHHHHH----HHHHHHHHhhhCCC--CChhhhhhhhhHHHHHHHhC
Q 002856 164 RPPRLTHLETSITRHKAHI----MKLELILRLLDNDE--LSPEQVNDVKDLLEDYVERN 216 (873)
Q Consensus 164 ~~~r~~~le~~ierhk~Hi----~kLE~lLRlL~N~~--l~pe~V~~ikddieyYve~n 216 (873)
+.+|++.++.-|+...-++ .++|.|-..+..+- .+-+.+.++|+-|..|++..
T Consensus 161 ~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~ 219 (236)
T PF09325_consen 161 RQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQ 219 (236)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777666555555 34445555444433 35778888888888888854
No 374
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.02 E-value=4.1e+02 Score=25.47 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=27.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
|....+|..+|.+-|+.|+++++.++.++..+
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l 113 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKL 113 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778899999999999999999998887665
No 375
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.98 E-value=95 Score=29.51 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhc
Q 002856 45 EADLKKEIKKLQRYRDQIKTWIQ 67 (873)
Q Consensus 45 E~DLKKEIKKLQR~RDQIKtW~~ 67 (873)
..+|.++|+.|++.++.|+.++.
T Consensus 88 ~~~l~~~i~~l~~~~~~l~~~~~ 110 (123)
T cd04770 88 LAEVEAKIAELQALRAELAGLLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999998888774
No 376
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=30.88 E-value=1.4e+02 Score=30.98 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=38.6
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcccccc
Q 002856 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK 72 (873)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIK 72 (873)
+++.-++..|=.-.=-.+|.++++.=.+.||.+|..-+.+.+.+||+ |-.|+.++.+|
T Consensus 105 ~~kma~~~~e~~v~~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~~----~~~~~~~~~~~ 162 (162)
T PRK12751 105 AEKMSQNQIERHVEMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQQ----KPAAQPSSAQK 162 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh----ccccccCccCC
Confidence 34443333333333345666666777999999999999998877753 66888776543
No 377
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=30.82 E-value=2.9e+02 Score=33.80 Aligned_cols=49 Identities=29% Similarity=0.398 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHH-----hHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHH
Q 002856 46 ADLKKEIKKLQR-----YRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMER 97 (873)
Q Consensus 46 ~DLKKEIKKLQR-----~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MEr 97 (873)
.+|+-|++|.+| .||..|.=++.. |+|=+ |-|+.....+|+-||...++
T Consensus 222 ~eI~e~~~~~~rd~t~~~r~~F~~eL~~A-i~eiR--aqye~~~~~nR~diE~~Y~~ 275 (546)
T KOG0977|consen 222 QEIEEERRKARRDTTADNREYFKNELALA-IREIR--AQYEAISRQNRKDIESWYKR 275 (546)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHH-HHHHH--HHHHHHHHHhHHHHHHHHHH
Confidence 344444444443 244555444432 22222 45667777777777765544
No 378
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=30.69 E-value=1e+03 Score=28.67 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 002856 41 KEKFEADLKKEIKKLQRYRDQI 62 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQI 62 (873)
+..|+..|+.-=++|++++++|
T Consensus 213 ~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 213 AEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777778889999988
No 379
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=30.68 E-value=1.6e+02 Score=27.07 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=34.5
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhc------CCCchhHHHHHHHHHHHHHHHHHhHHHHH
Q 002856 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYD------TDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (873)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~~K~~~------a~n~nQKEKlE~DLKKEIKKLQR~RDQIK 63 (873)
+..+|.+..+.|.+.|..-+..-++... ..-.+|.++|-.+|+..|...|+.+..++
T Consensus 51 ~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 113 (117)
T smart00503 51 LIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYR 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444333211 11246788888889888888888777665
No 380
>PF09210 DUF1957: Domain of unknown function (DUF1957); InterPro: IPR015293 This C-terminal domain is found in a set of hypothetical bacterial proteins that have a N-terminal domain related to the glycoside hydrolase family 57 family GH57 from CAZY. The exact function of this domain has not, as yet, been defined. ; PDB: 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=30.67 E-value=75 Score=30.46 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhh
Q 002856 171 LETSITRHKAHIMKLELILRLLDNDELSPEQVNDVK 206 (873)
Q Consensus 171 le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ik 206 (873)
.+...+|-+.|+.++..|..+|.++.|+.+-+..+.
T Consensus 53 ~~YA~~R~~~Hl~rF~~L~~~l~~~~id~~~L~~~E 88 (102)
T PF09210_consen 53 VEYARERFKEHLNRFWRLYDMLESGRIDEEWLEELE 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 477889999999999999999999999966555543
No 381
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=30.61 E-value=70 Score=29.93 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=28.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
|+...+|.+||+.-|+.|+.+++.++.++..+
T Consensus 72 E~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~ 103 (120)
T PF02996_consen 72 EMSLEEAIEFLKKRIKELEEQLEKLEKELAEL 103 (120)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999988887665
No 382
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.55 E-value=1.2e+02 Score=33.44 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=25.7
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHH
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEAD 47 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~D 47 (873)
++||+|++++++.+.----.|+......+.+ |+|++.-
T Consensus 120 ~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~a-----r~K~~~a 157 (264)
T cd07654 120 QRAQAEVQQTVRELSKSRKTYFEREQVAHLA-----REKAADV 157 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHH
Confidence 5788888888887777777776655543332 6777653
No 383
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=30.40 E-value=8.2e+02 Score=27.47 Aligned_cols=80 Identities=21% Similarity=0.335 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC---C-hhhhh-
Q 002856 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDEL---S-PEQVN- 203 (873)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l---~-pe~V~- 203 (873)
.++..=|+..|..+..+++..+..++.+. .....|+..|+|.+..+++.+.=|+.|.+=.= | -|.++
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~~~~~l~~l~--------~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~ 232 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQTQQQLNNLA--------SDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEE 232 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 34444566666666666666666666652 11234677777777777777777777765441 1 23333
Q ss_pred hhhhHHHHHHHhC
Q 002856 204 DVKDLLEDYVERN 216 (873)
Q Consensus 204 ~ikddieyYve~n 216 (873)
+++.--+-||+..
T Consensus 233 EL~~lY~~Y~~kf 245 (267)
T PF10234_consen 233 ELQKLYEIYVEKF 245 (267)
T ss_pred HHHHHHHHHHHHH
Confidence 2555556677654
No 384
>PRK10869 recombination and repair protein; Provisional
Probab=30.31 E-value=1.1e+03 Score=28.77 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002856 129 SETRDWLNNLVSELESQIDSFEAEL 153 (873)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaE~ 153 (873)
.++..-|.++.++|+...+.++.+-
T Consensus 271 ~~~~~~l~~~~~~l~~~~~~~~~dp 295 (553)
T PRK10869 271 EEALIQIQEASDELRHYLDRLDLDP 295 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCH
Confidence 4466667888888887776655443
No 385
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=30.28 E-value=2.4e+02 Score=25.35 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=27.5
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCc
Q 002856 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNA 38 (873)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~ 38 (873)
=|.||.++|-++.+.-+-||.--+-+....-.
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~~~cD 36 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIATGCD 36 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCc
Confidence 37899999999999999999998888775543
No 386
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=30.21 E-value=3e+02 Score=27.67 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=27.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHH
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSI 175 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~i 175 (873)
++-|.++..-|...|..|..+++.||.+.-++-..-.|.....+..+...+
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~ 65 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQF 65 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 344566666666666666666666666655543222333334455554443
No 387
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.10 E-value=2.3e+02 Score=29.97 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhhCCC-C-C---hhhhhhhhhHHHHHHH
Q 002856 180 AHIMKLELILRLLDNDE-L-S---PEQVNDVKDLLEDYVE 214 (873)
Q Consensus 180 ~Hi~kLE~lLRlL~N~~-l-~---pe~V~~ikddieyYve 214 (873)
..|.+||.++| +.+. + | -.++..+|+|++|...
T Consensus 93 R~irrLeK~~k--eS~ad~kd~~i~~qlrk~kidL~YVr~ 130 (199)
T KOG4484|consen 93 RSIRRLEKLIK--ESGADVKDKQIQQQLRKLKIDLEYVRF 130 (199)
T ss_pred HHHHHHHHHHH--hhccchhhHHHHHHHHHHHHHHHHHHh
Confidence 35888999999 4433 2 2 3467789999998765
No 388
>PF15456 Uds1: Up-regulated During Septation
Probab=29.97 E-value=5.7e+02 Score=25.47 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 002856 46 ADLKKEIKKLQRYRDQIK 63 (873)
Q Consensus 46 ~DLKKEIKKLQR~RDQIK 63 (873)
.+||||++.|.--=+.++
T Consensus 25 e~LKkEl~~L~~R~~~lr 42 (124)
T PF15456_consen 25 EELKKELRSLDSRLEYLR 42 (124)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 479999999985444444
No 389
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=29.94 E-value=3.3e+02 Score=26.32 Aligned_cols=62 Identities=11% Similarity=0.280 Sum_probs=46.0
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCch-hHHHHHHHHHHHHHH-HHHhHHHHHHhhccccccc
Q 002856 12 DRVLKKVQEGVDVFDSIWNKVYDTDNAN-QKEKFEADLKKEIKK-LQRYRDQIKTWIQSSEIKD 73 (873)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~~K~~~a~n~n-QKEKlE~DLKKEIKK-LQR~RDQIKtW~~s~eIKD 73 (873)
.+.+..+.+-++..+..|+.+......+ .-..+..+|++...+ ++.--+++-.++..+|+.+
T Consensus 81 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~al~~~d~~~ 144 (171)
T PF02203_consen 81 AELLARAEQNLEQAEQAFDAFKALPHASPEERALADELEASFDAYLQQALDPLLAALRAGDIAA 144 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS---GTGGHHHHHHHHHHHHH-HHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCHHH
Confidence 5777788888888888888888887766 556688888888888 7677688888888887763
No 390
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=29.84 E-value=4.6e+02 Score=24.41 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHH
Q 002856 43 KFEADLKKEIKKLQ 56 (873)
Q Consensus 43 KlE~DLKKEIKKLQ 56 (873)
..-..|++||.+||
T Consensus 8 ~~r~~LeqeV~~Lq 21 (88)
T PF14389_consen 8 ERRSALEQEVAELQ 21 (88)
T ss_pred hHHHHHHHHHHHHH
Confidence 44567888888888
No 391
>PF08376 NIT: Nitrate and nitrite sensing; InterPro: IPR013587 The nitrate and nitrite-sensing (NIT) domain is a (~250 aa) sensor domain found in various receptor components of signal transduction pathways from different bacterial lineages []. The NIT domain is predicted to be all alpha-helical in structure []. Proteins containing a NIT domain belong to one of four known classes of prokaryotic signal transduction proteins: intracellular transcription anti-termination regulators, sensor histidine kinases, methyl-accepting chemotaxis proteins, diguanylate cyclases/phosphodiesterases. NIT-containing receptors regulate cellular functions such as gene expression (transcription anti-terminators and histidine kinases), cell motility (chemotaxis receptors), and enzyme activity (diguanylate cyclases/phosphodiesterases), in response to changes in nitrate and/or nitrite concentrations. The NIT domain is found as both an extracellular and an intracellular sensor. The NIT domain can be found in combination with other signalling domains, such as ANTAR, HAMP (IPR003660 from INTERPRO), MCP, Hemerythrins (IPR002063 from INTERPRO), CHASE (IPR006189 from INTERPRO), GGDEF (IPR000160 from INTERPRO), PAS (IPR000014 from INTERPRO), EAL (IPR001633 from INTERPRO), HK (IPR005467 from INTERPRO), GAF, REC and Hpt (IPR008207 from INTERPRO).; PDB: 4AKK_A.
Probab=29.55 E-value=2.6e+02 Score=28.55 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=50.9
Q ss_pred hHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHH-HHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHH
Q 002856 17 KVQEGVDVFDSIWNKVYDTDNANQKEKFEADLK-KEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREM 95 (873)
Q Consensus 17 KV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLK-KEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~M 95 (873)
++.+=+..++..++.+...-...++..|+.-+. ..+++++++|++|-.=-.. .. .+.-.-.++.+..-..+
T Consensus 158 ~~~~~~~~~~~~l~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~------~~~~~~~~W~~~~t~~i 229 (247)
T PF08376_consen 158 QFASLIARQRAALESFQAAASPEQRALYDALLSSPAVQRVQRLRDQILSNGPG--GG------LSPIDAEEWFAAATARI 229 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHS-----HHHHHHHHHHHCS------S-------TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccC--CC------CCCCCHHHHHHHHHHHH
Confidence 333444444555555555556677888888777 7899999999998762221 11 11225688999999999
Q ss_pred HHHHHHHhhh
Q 002856 96 ERFKICEKET 105 (873)
Q Consensus 96 ErFK~vEKe~ 105 (873)
+.++.||...
T Consensus 230 d~l~~ve~~l 239 (247)
T PF08376_consen 230 DALRQVEDRL 239 (247)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 392
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=29.50 E-value=7.9e+02 Score=27.07 Aligned_cols=45 Identities=18% Similarity=0.354 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 002856 140 SELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLEL 187 (873)
Q Consensus 140 deL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~ 187 (873)
+..+.+++..+..+..+. ......+++.++..+++.+..+.+++.
T Consensus 155 ~~a~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~a~~ 199 (331)
T PRK03598 155 DQAQATLKSAQDKLSQYR---EGNRPQDIAQAKASLAQAQAALAQAEL 199 (331)
T ss_pred HHHHHHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544432 122234555566666555555544443
No 393
>COG3945 Uncharacterized conserved protein [Function unknown]
Probab=29.39 E-value=1.3e+02 Score=31.99 Aligned_cols=49 Identities=14% Similarity=0.396 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHhhhCCCCChhhhhhhhhHHHHHHHhCC
Q 002856 169 THLETSITRHKAHIMKLEL---ILRLLDNDELSPEQVNDVKDLLEDYVERNQ 217 (873)
Q Consensus 169 ~~le~~ierhk~Hi~kLE~---lLRlL~N~~l~pe~V~~ikddieyYve~nq 217 (873)
.-+..+++-|.+=+..|.. ++.++.||.|+++.|.+|-|.|..|++..-
T Consensus 8 ~~i~~lvEeH~yIlraL~iLr~~~~~~~~g~i~y~~v~~iidFi~nfaDkcH 59 (189)
T COG3945 8 DSIKLLVEEHTYILRALSILRKALDLIKNGPIDYSDVKEIIDFIRNFADKCH 59 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 3456677888776666554 466778899999999999999999999653
No 394
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=29.39 E-value=98 Score=30.09 Aligned_cols=49 Identities=27% Similarity=0.349 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHH
Q 002856 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSIT 176 (873)
Q Consensus 127 ek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ie 176 (873)
.-.....-|.+++.+|..+++....+++.-..||++++ .|+++|+..|.
T Consensus 69 ~~l~i~t~L~~v~~~l~~~~~~~~rQl~aE~~k~~~~~-~r~~~l~~~i~ 117 (118)
T PF08514_consen 69 AALKIMTSLCDVAKSLSEELEKTQRQLEAEKKKKRKNK-SRLEELEQKIK 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHHhc
Confidence 34456666777788888888888888766544444433 48888887763
No 395
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=29.29 E-value=3.9e+02 Score=28.52 Aligned_cols=47 Identities=30% Similarity=0.389 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002856 83 ALVDARKLIERE-MERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAE 152 (873)
Q Consensus 83 ~L~e~Rk~IE~~-MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE 152 (873)
.|.+.||-|..+ |+=|+.+|...| +...=|.++++.|..||..||..
T Consensus 57 ~id~~RK~ikk~~~~P~~~Fe~~~K-----------------------~l~~~i~~~~~~I~~~ik~~Ee~ 104 (215)
T PF07083_consen 57 AIDDKRKEIKKEYSKPIKEFEAKIK-----------------------ELIAPIDEASDKIDEQIKEFEEK 104 (215)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777654 334444444433 34444667778888888877766
No 396
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=29.27 E-value=1.3e+02 Score=33.46 Aligned_cols=47 Identities=19% Similarity=0.433 Sum_probs=35.0
Q ss_pred hhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhH
Q 002856 8 QGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYR 59 (873)
Q Consensus 8 Q~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~R 59 (873)
|+.|+.+++-|.|-++.|+.--++++.. +.+--+.|+++|++|+...
T Consensus 1 ~~~l~~l~~pl~e~l~~~~~~l~~~~~~-----~~~~~~~L~~~l~~l~~~~ 47 (304)
T PF02646_consen 1 QEQLEQLLKPLKEQLEKFEKRLEESFEQ-----RSEEFGSLKEQLKQLSEAN 47 (304)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999888766665432 3344477888887776666
No 397
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=29.24 E-value=8.5e+02 Score=27.26 Aligned_cols=180 Identities=18% Similarity=0.235 Sum_probs=0.0
Q ss_pred cccchhhhHHHHhhhHHHhHHHHHHHHHHhh---------------------------cCCCchhHHHHHHHHHHHHHHH
Q 002856 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVY---------------------------DTDNANQKEKFEADLKKEIKKL 55 (873)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~---------------------------~a~n~nQKEKlE~DLKKEIKKL 55 (873)
....|..+|.+.-+-+..+...=..++.|+. ......+-.+|+.-| .++..|
T Consensus 127 ~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~v~~Lr~~l-~~l~~l 205 (342)
T cd08915 127 AAKELYEKVTKLRGYLEQASNSDNEVLQCYESIDPNLVLLCGGYKELKAFIPSPYPALDPEVSEVVSSLRPLL-NEVSEL 205 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCChHHHHHhCCCccccCCchhhHHHHHHHHHH-HHHHHH
Q ss_pred HHhHH----HHHHhhccccccccccchhhHHHHHHHHHHHH-HHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHH
Q 002856 56 QRYRD----QIKTWIQSSEIKDKKVSASYEQALVDARKLIE-REMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE 130 (873)
Q Consensus 56 QR~RD----QIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE-~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E 130 (873)
.+-|+ .+|.=+.++||.. .|+.+.+..+ ..+|. .+++|.|. | ||....=.+
T Consensus 206 k~eR~~~~~~lk~~~~~ddI~~---------~ll~~~~~~~~~~~e~--lf~~eL~k--f-----------~~~~~~i~~ 261 (342)
T cd08915 206 EKERERFISELEIKSRNNDILP---------KLITEYKKNGTTEFED--LFEEHLKK--F-----------DKDLTYVEK 261 (342)
T ss_pred HHHHHHHHHHHHHHhhhcCCcH---------HHHHHhhccccchhHH--HHHHHHHH--H-----------hHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhhhhhhhHH
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLL 209 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~-pe~V~~ikddi 209 (873)
...==.++|.+|....+.|-...+. ....+.+..-++.|+.......--+.+|+.=+++-. + .+.|..++..+
T Consensus 262 ~~~~Q~~ll~~i~~~~~~f~~~~~~--~~~~~~r~~~l~~L~~ay~~y~el~~~l~eG~~FY~----dL~~~~~~l~~~~ 335 (342)
T cd08915 262 TKKKQIELIKEIDAANQEFSQVKNS--NDSLDPREEALQDLEASYKKYLELKENLNEGSKFYN----DLIEKVNRLLEEC 335 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--chhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHH
Q ss_pred HHHH
Q 002856 210 EDYV 213 (873)
Q Consensus 210 eyYv 213 (873)
+.||
T Consensus 336 ~~f~ 339 (342)
T cd08915 336 EDFV 339 (342)
T ss_pred HHHH
No 398
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=29.14 E-value=1.3e+02 Score=35.65 Aligned_cols=65 Identities=29% Similarity=0.379 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC---chhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 002856 132 RDWLNNLVSELESQIDSFEAELEGLTVKKGKTR---PPRLTHLETSITRHKAHIMKLELILRLLDNDELS 198 (873)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~---~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~ 198 (873)
+.-|++=+++|+.||+.++..++.+.. +... ..+++.++..+...+-++..|+.+|+-|......
T Consensus 165 ~~L~~~Rl~~L~~qi~~~~~~l~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 232 (475)
T PF10359_consen 165 IELIQERLDELEEQIEKHEEKLGELEL--NPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESS 232 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 445677888999999999988888744 2211 2466777777788888888888888877665543
No 399
>PRK11820 hypothetical protein; Provisional
Probab=29.10 E-value=6.6e+02 Score=28.24 Aligned_cols=80 Identities=16% Similarity=0.299 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCC
Q 002856 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT 121 (873)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~ 121 (873)
+.|..||..-|.+|..+-++|+.-.. ..+.++|+.+..+|+.+- . ..
T Consensus 151 ~~L~~dl~~rl~~i~~~~~~i~~~~p--------------~~~~~~~~rL~~rl~el~--~-----------------~~ 197 (288)
T PRK11820 151 AALKADLLQRLDAIEALVAKIEALAP--------------EILEEYRERLRERLEELL--G-----------------EL 197 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhch--------------HHHHHHHHHHHHHHHHHH--h-----------------hc
Confidence 47888888888888888888765433 388999999999999873 0 12
Q ss_pred CchHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHhh
Q 002856 122 DPKEKAKSETRDW-----LNNLVSELESQIDSFEAELEG 155 (873)
Q Consensus 122 Dp~ekek~E~~~w-----L~~~IdeL~~QiE~~EaE~E~ 155 (873)
|+ ..--+|+.-| +++=|.-|+..+++|+.-++.
T Consensus 198 d~-~Rl~qEval~adK~DI~EEi~RL~sHl~~f~~~L~~ 235 (288)
T PRK11820 198 DE-NRLEQEVALLAQKADIAEELDRLKSHLKEFREILKK 235 (288)
T ss_pred CH-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhc
Confidence 44 2333343333 445578888899999888865
No 400
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.06 E-value=1.1e+03 Score=28.55 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccc---ccccCCCCCCCchHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002856 83 ALVDARKLIEREMERFKICEKETKTKAFS---KEGLGQQPKTDPKEK-AKSETRDWLNNLVSELESQIDSFEAELEGLTV 158 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEKe~KtKafS---kEGL~~~~k~Dp~ek-ek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~ 158 (873)
.|...|+.-+++.+.+...+..++. .|- ++-|.. +.+ =......=|...+.=|+.||+.|+..++.+..
T Consensus 89 ~le~~~~~~~ek~~~l~~~~~~L~~-~F~~LA~~ile~------k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~ 161 (475)
T PRK10361 89 RMEAAQQHADDKIRQMINSEQRLSE-QFENLANRIFEH------SNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFG 161 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554443 221 111111 111 11223445677888888999999998888754
Q ss_pred c
Q 002856 159 K 159 (873)
Q Consensus 159 K 159 (873)
.
T Consensus 162 ~ 162 (475)
T PRK10361 162 K 162 (475)
T ss_pred H
Confidence 3
No 401
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=29.03 E-value=1.2e+03 Score=29.47 Aligned_cols=153 Identities=20% Similarity=0.236 Sum_probs=78.1
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHH
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDAR 88 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~R 88 (873)
.|+||++|-|.|-+..=.++---+. +|-.-.+|=-+-||.|.=+ .+..++--|.. ..+..|.|--
T Consensus 27 ~el~~tnkfik~~ikdg~~li~a~k---------nls~a~~kfa~tl~~f~f~---~igd~~tdde~---~ia~slkefa 91 (812)
T KOG1451|consen 27 VELDRTNKFIKELIKDGKELISALK---------NLSSAVRKFAQTLQEFKFE---CIGDAETDDEI---FIATSLKEFA 91 (812)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH---------HHHHHHHHHHHHHHhheee---eccccccchHH---HHHHHHHHHH
Confidence 6889999988876654333322221 1111112222333333211 12333333322 2334566543
Q ss_pred H-HHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhcccCCCC
Q 002856 89 K-LIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEG---LTVKKGKTR 164 (873)
Q Consensus 89 k-~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~---Ls~KK~K~~ 164 (873)
. +++.+=||-+.|+ +..|.|. .|.|+=|.|.+.++++--....+.-|.|=.-+|+ |+.|| ..
T Consensus 92 ~ll~~ve~er~~~v~-------~Ase~li-----~PlekFRkEqIG~~KE~KkKydKe~ekfy~~LekHLhLSskk--es 157 (812)
T KOG1451|consen 92 SLLNQVEDERMRMVG-------NASESLI-----EPLEKFRKEQIGTLKEEKKKYDKESEKFYQTLEKHLHLSSKK--ES 157 (812)
T ss_pred HHHHHHHHHHHHHHh-------hhHHHHH-----hHHHHHHHHHhhhhHHHHhhhhhhhHHHHHHHHHHhccccch--hh
Confidence 3 3344455544443 4445553 5677766666655555555455555555555554 23344 33
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Q 002856 165 PPRLTHLETSITRHKAHIMKLELILR 190 (873)
Q Consensus 165 ~~r~~~le~~ierhk~Hi~kLE~lLR 190 (873)
+=+-++++--.+||+|.-.-|+-+..
T Consensus 158 qlqeAD~Qvd~~r~nFfe~SL~YV~~ 183 (812)
T KOG1451|consen 158 QLQEADAQVDTQRKNFFEASLQYVAE 183 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566667899999998888764
No 402
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=28.85 E-value=1.8e+02 Score=25.42 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc------cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 135 LNNLVSELESQIDSFEAELEGLTVK------KGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (873)
Q Consensus 135 L~~~IdeL~~QiE~~EaE~E~Ls~K------K~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~ 193 (873)
+..-|..|+++++.++.+++.+..| -.|...+=++.-...++...-++.+|+.-|..|.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 403
>PHA02939 hypothetical protein; Provisional
Probab=28.77 E-value=6e+02 Score=25.69 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=32.6
Q ss_pred HhhcCCC-chhHHHHHHHHHHHHHHHHHhHHHHHHhhcccc
Q 002856 31 KVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSE 70 (873)
Q Consensus 31 K~~~a~n-~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~e 70 (873)
++++.++ ..|||-.|+.||.-|.+|-|.=.|+-.|..+..
T Consensus 79 ~l~DP~st~~qrEyae~~l~~lle~~~r~f~~Ll~~ci~ek 119 (144)
T PHA02939 79 ELYDPESTDDQREYAEHRLKGLLELLERNFNQLLEFCIDEK 119 (144)
T ss_pred HHhCCccchhHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4556554 458999999999999999999999999876644
No 404
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=28.74 E-value=1.8e+02 Score=30.11 Aligned_cols=84 Identities=15% Similarity=0.254 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc------------------ccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002856 133 DWLNNLVSELESQIDSFEAELEGLTV------------------KKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (873)
Q Consensus 133 ~wL~~~IdeL~~QiE~~EaE~E~Ls~------------------KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N 194 (873)
+++...+++-+.++..++.-+..+.. +--++++.|+.+++.++..|---..+|=.--..|++
T Consensus 71 ~~~~~~l~ea~~~i~~i~~~~~~i~~~~~~~~~~~~~~~~~~I~~~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~ 150 (199)
T PF10112_consen 71 EYIREILEEAKEKIRRIEKAIKRIRDLEMIEKVSRIEKIARRIFKYVEKDPERLTQARKFLYYYLPTAVKLLEKYAELES 150 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 35666777777777766666554421 011334555666665555444333333333345666
Q ss_pred CCCChhhhhhhhhHHHHHHHhC
Q 002856 195 DELSPEQVNDVKDLLEDYVERN 216 (873)
Q Consensus 195 ~~l~pe~V~~ikddieyYve~n 216 (873)
..+..+++...+++++.-++.-
T Consensus 151 ~~~~~~~~~~~l~e~~~~L~~l 172 (199)
T PF10112_consen 151 QPVKSEEIKQSLEEIEETLDTL 172 (199)
T ss_pred ccCCChhHHHHHHHHHHHHHHH
Confidence 6666666666666666665543
No 405
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=28.72 E-value=7.5e+02 Score=32.39 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=18.4
Q ss_pred HHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 125 EKAKSE-TRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 125 ekek~E-~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
|..+.| ....|+..|++..+=-+.++...|.|
T Consensus 1119 er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L 1151 (1189)
T KOG1265|consen 1119 ERRKRELNSSNIKEFVEERKRLAEKQSKRQEQL 1151 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 45566666666666666666665555
No 406
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=28.67 E-value=1.3e+03 Score=29.06 Aligned_cols=140 Identities=21% Similarity=0.215 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHHHHHH-hHHHHHHhhccccccccccchhhHHHHHHHHHHHHH---HHHHHHHHHhhh------ccc
Q 002856 39 NQKEKFEADLKKEIKKLQR-YRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIER---EMERFKICEKET------KTK 108 (873)
Q Consensus 39 nQKEKlE~DLKKEIKKLQR-~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~---~MErFK~vEKe~------KtK 108 (873)
+|||+.=..|-.+|+.+|. ++.-+-+|.+- | ..+++.|..++.-||+ +.+.|+++|..- |-=
T Consensus 288 ~~kd~~i~~L~~di~~~~~S~~~e~e~~~~q--I------~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 288 NQKDSEIAQLSNDIERLEASLVEEREKHKAQ--I------SALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAI 359 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHh
Confidence 3466666666666666553 34444444332 2 2244455555555543 444555555432 222
Q ss_pred ccc-ccccCCCC-CCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 002856 109 AFS-KEGLGQQP-KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLE 186 (873)
Q Consensus 109 afS-kEGL~~~~-k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE 186 (873)
-|+ .++-...+ -..+.|.--.+...+|.+-.-.|+.+...+..++..+. .+.+++.....--+.-|.+||
T Consensus 360 ef~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~--------~~~~el~~~~~~~ke~i~klE 431 (629)
T KOG0963|consen 360 EFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELS--------KKGEELEAKATEQKELIAKLE 431 (629)
T ss_pred hcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHH--------hhhhhhHHHHHHHHHHHHHHH
Confidence 344 33333321 11233333333444555555555555555555554441 234556666666666677777
Q ss_pred HHHHhhhC
Q 002856 187 LILRLLDN 194 (873)
Q Consensus 187 ~lLRlL~N 194 (873)
.=|+-+++
T Consensus 432 ~dl~~~~~ 439 (629)
T KOG0963|consen 432 QDLLKVQV 439 (629)
T ss_pred hhHhhccc
Confidence 76665544
No 407
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=28.48 E-value=1.2e+03 Score=28.86 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc
Q 002856 137 NLVSELESQIDSFEAELEGLTVK 159 (873)
Q Consensus 137 ~~IdeL~~QiE~~EaE~E~Ls~K 159 (873)
..|.+|+.|+..++.++..+..+
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~ 310 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTT 310 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788888888888877776543
No 408
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=28.46 E-value=2.4e+02 Score=26.31 Aligned_cols=48 Identities=21% Similarity=0.387 Sum_probs=33.1
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH----hHHHHHHhhccccc
Q 002856 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR----YRDQIKTWIQSSEI 71 (873)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR----~RDQIKtW~~s~eI 71 (873)
=+++++.|.+--+.++.+|+++.. .|.|.+||.. |.+.|.+.++++.|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~-------------Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v 69 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEE-------------VKEENEKLESENEYLQQYIGNLMSSSSV 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 348899999999999999999954 4555555533 44556665655544
No 409
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=28.33 E-value=77 Score=28.17 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhhCCCCChhh-hhhhhhHHHHHHHhCC
Q 002856 181 HIMKLELILRLLDNDELSPEQ-VNDVKDLLEDYVERNQ 217 (873)
Q Consensus 181 Hi~kLE~lLRlL~N~~l~pe~-V~~ikddieyYve~nq 217 (873)
-+.+||.|++.|+++.|+-|+ +...++-++.+-.+++
T Consensus 6 ~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~ 43 (67)
T TIGR01280 6 ALSELEQIVQKLESGDLALEEALNLFERGMALARRCEK 43 (67)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999554 4457777777666554
No 410
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.27 E-value=2.1e+02 Score=28.23 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHh
Q 002856 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (873)
Q Consensus 176 erhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~ 215 (873)
..++.--.|.+.+|-||=- -.|+|++++.||...-+.
T Consensus 75 ~el~~l~~ry~t~LellGE---K~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 75 QELEELQQRYQTLLELLGE---KSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHH
Confidence 4444445566666666532 368899999998876543
No 411
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=28.24 E-value=4e+02 Score=31.70 Aligned_cols=62 Identities=8% Similarity=0.187 Sum_probs=47.0
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHhHHHHHHhhccccc
Q 002856 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEI 71 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~~K~~~a~n-~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eI 71 (873)
+.+...+.+++-++..+..|+++..... +..++.+-.++++..+...+.++.+..++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~l~~l~~~~~~ 148 (554)
T PRK15041 86 TVAELMQSASISLKQAEKNWADYEALPRDPRQSTAAAAEIKRNYDIYHNALAELIQLLGAGKI 148 (554)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 4567777888888888888888887643 3345556788888888888888888888876653
No 412
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=28.20 E-value=2.3e+02 Score=24.15 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc---cCCCCchhhHHHHHHH--HHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhH
Q 002856 134 WLNNLVSELESQIDSFEAELEGLTVK---KGKTRPPRLTHLETSI--TRHKAHIMKLELILRLLDNDELSPEQVNDVKDL 208 (873)
Q Consensus 134 wL~~~IdeL~~QiE~~EaE~E~Ls~K---K~K~~~~r~~~le~~i--erhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikdd 208 (873)
+|..+++++...++.++..+..+... .-+.--.++.-.-..+ .+-......||..++..+.... +.+..+-+.
T Consensus 2 ll~~f~~~~~~~~~~l~~~~~~~~~~d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~~~~--~~~~~~~~~ 79 (90)
T PF01627_consen 2 LLDIFLEEAPEDLEQLEQALQALEQEDWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDKPEA--EELEQLLDE 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSHHCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHHHS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCccch--hHHHHHHHH
Confidence 55666777777777777776433200 0000000111111111 4556667778887776665555 566666666
Q ss_pred HHHHHH
Q 002856 209 LEDYVE 214 (873)
Q Consensus 209 ieyYve 214 (873)
|+.+|+
T Consensus 80 l~~~l~ 85 (90)
T PF01627_consen 80 LEAMLE 85 (90)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766665
No 413
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.14 E-value=1.3e+03 Score=29.11 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 002856 80 YEQALVDARKLIEREMERFKIC 101 (873)
Q Consensus 80 ~~~~L~e~Rk~IE~~MErFK~v 101 (873)
....|.+.|+.-.++|-.||+|
T Consensus 108 l~~~le~lr~qk~eR~~ef~el 129 (660)
T KOG4302|consen 108 LKPYLEGLRKQKDERRAEFKEL 129 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778888888999999875
No 414
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=28.08 E-value=7.9e+02 Score=26.56 Aligned_cols=68 Identities=13% Similarity=0.271 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhhcccCCCCchhhHHHHHHH--HHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHh
Q 002856 145 QIDSFEAELEGLTVKKGKTRPPRLTHLETSI--TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (873)
Q Consensus 145 QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~i--erhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~ 215 (873)
..|.+++-+++...=..|+++..+++.+..+ .|+.|+-..|+.++.+-. |..-.--+|.|.|--||..
T Consensus 119 ~se~~~~al~k~~~ls~k~K~~~~eEA~~~L~~~r~~F~~~sLdYV~qi~~---vq~rKkfefle~llsfm~a 188 (207)
T cd07636 119 ETEKYCAVLEKHLNLSSKKKESQLHEADSQVDLVRQHFYEVSLEYVFKVQE---VQERKMFEFVEPLLAFLQG 188 (207)
T ss_pred hhhHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3445555555543222233344666766655 789999999999986421 2222333455666666653
No 415
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=28.06 E-value=5.1e+02 Score=31.30 Aligned_cols=121 Identities=16% Similarity=0.163 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcccC
Q 002856 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL-TVKKG 161 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L-s~KK~ 161 (873)
...+....+-..+-+|+++|.-.+.. .| +|+..+...+-..-|.+++.+=...-=.++.++.-| ...+|
T Consensus 373 ~~~~~a~~lr~~la~y~e~~~l~~~g----~~------ld~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~q~~~l~a~~~G 442 (501)
T TIGR00962 373 AMKQVAGSLRLELAQYRELEAFSQFA----SD------LDEATKAQLERGKRLVELLKQPQYKPLPVEEQVVILYAGTKG 442 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cc------CCHHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcC
Confidence 34444455666778888888777653 22 466555444433333322211111112334443333 23444
Q ss_pred --CCCchhhHHHHHHHHHHHHHHH-HHHHHHHhh-hCCCCChhhhhhhhhHHHHHHHh
Q 002856 162 --KTRPPRLTHLETSITRHKAHIM-KLELILRLL-DNDELSPEQVNDVKDLLEDYVER 215 (873)
Q Consensus 162 --K~~~~r~~~le~~ierhk~Hi~-kLE~lLRlL-~N~~l~pe~V~~ikddieyYve~ 215 (873)
+.- .++++..+......|+. +.-.+++.+ ++..|+.+.-+.|++.|..|++.
T Consensus 443 ~l~~v--~~~~i~~~~~~l~~~l~~~~~~~~~~i~~~~~l~~~~~~~L~~~i~~~~~~ 498 (501)
T TIGR00962 443 YLDDI--PVDKVRKFEQELLDYLDANHPDILEEINTKKKLTEELEDKLKEALKNFKKT 498 (501)
T ss_pred Ccccc--cHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 221 12234444433333331 233334444 35679988788899999999874
No 416
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=27.94 E-value=1.3e+02 Score=28.39 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhc
Q 002856 43 KFEADLKKEIKKLQRYRDQIKTWIQ 67 (873)
Q Consensus 43 KlE~DLKKEIKKLQR~RDQIKtW~~ 67 (873)
.-..+|.++|++||+.++.|+.++.
T Consensus 82 ~~~~~l~~~i~~l~~~~~~l~~~l~ 106 (108)
T cd01107 82 EKLAELEAEIEELQRILRLLEDRLK 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788999999999999998764
No 417
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=27.91 E-value=1.4e+03 Score=29.20 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002856 137 NLVSELESQIDSFEAEL 153 (873)
Q Consensus 137 ~~IdeL~~QiE~~EaE~ 153 (873)
+.|.+++++++.+..++
T Consensus 572 ~~~~~a~~~~~~~i~~l 588 (771)
T TIGR01069 572 EALKALKKEVESIIREL 588 (771)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555554
No 418
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.81 E-value=1.8e+02 Score=32.44 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=35.0
Q ss_pred hHHHhHHHHHHHHHHhhcCCCc--hh---------HHHHHHHHHHHHHHHHHhHHHHHH
Q 002856 17 KVQEGVDVFDSIWNKVYDTDNA--NQ---------KEKFEADLKKEIKKLQRYRDQIKT 64 (873)
Q Consensus 17 KV~EGve~Fd~i~~K~~~a~n~--nQ---------KEKlE~DLKKEIKKLQR~RDQIKt 64 (873)
+++.-++.|+++|+++.+-+.. .+ -++.+--+||.|.-||++|.|++.
T Consensus 147 ~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L~k~R~~L~~ 205 (293)
T COG4079 147 KLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETLRKHRRRLAE 205 (293)
T ss_pred CHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999744321 11 223667788999999999988763
No 419
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=27.80 E-value=2.5e+02 Score=33.70 Aligned_cols=50 Identities=8% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHHHH----HHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHH
Q 002856 41 KEKFEAD----LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREME 96 (873)
Q Consensus 41 KEKlE~D----LKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~ME 96 (873)
|++|+.. ...|.++|+.+=++.+.|+..+|.++ |+.++.+.++++..-|+
T Consensus 538 r~~l~~~~~~~~~~e~~~l~~~l~~~~~wL~~~d~~~------i~~~~~~l~~~~~~~~~ 591 (595)
T TIGR02350 538 EKTLKEAGDKLPAEEKEKIEKAVAELKEALKGEDVEE------IKAKTEELQQALQKLAE 591 (595)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHH
Confidence 5566421 34456777777888899998775432 33344444444444443
No 420
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.54 E-value=78 Score=29.06 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhCCCCChhhh-hhhhhHHHHHHHhCC
Q 002856 181 HIMKLELILRLLDNDELSPEQV-NDVKDLLEDYVERNQ 217 (873)
Q Consensus 181 Hi~kLE~lLRlL~N~~l~pe~V-~~ikddieyYve~nq 217 (873)
-+.+||.|++.|++|.|+-|+. ...++-++.+-.+++
T Consensus 15 a~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~ 52 (80)
T PRK00977 15 ALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQK 52 (80)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999995554 447777766655443
No 421
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.51 E-value=1.3e+02 Score=35.97 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002856 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls 157 (873)
+-...+..--+...++|++|++.++.|++.++
T Consensus 65 kVnqSALteqQ~kasELEKqLaaLrqElq~~s 96 (475)
T PRK13729 65 KVRQHATTEMQVTAAQMQKQYEEIRRELDVLN 96 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334555566788999999999988887663
No 422
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.38 E-value=1.2e+02 Score=32.43 Aligned_cols=88 Identities=24% Similarity=0.424 Sum_probs=56.7
Q ss_pred hHHHHHHH---HHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccC
Q 002856 40 QKEKFEAD---LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLG 116 (873)
Q Consensus 40 QKEKlE~D---LKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~ 116 (873)
||+.++.+ |++||.-|+.+.+++...+.+ +...+..++++++..+..+++
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~---------------q~~el~~L~~qi~~~~~~~~~------------ 102 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVAS---------------QEQELASLEQQIEQIEETRQE------------ 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH------------
Confidence 45555554 478888888888888776653 555566677777777777643
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhcccCCCCchhhHHHHHHHHHH
Q 002856 117 QQPKTDPKEKAKSETRDWLNNLVSELESQIDS---FEAELEGLTVKKGKTRPPRLTHLETSITRH 178 (873)
Q Consensus 117 ~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~---~EaE~E~Ls~KK~K~~~~r~~~le~~ierh 178 (873)
..-+|..+|++|+..|+. |-.+ .+..|++.|+..+.+-
T Consensus 103 --------------l~p~m~~m~~~L~~~v~~d~Pf~~~----------eR~~Rl~~L~~~l~~~ 143 (251)
T PF11932_consen 103 --------------LVPLMEQMIDELEQFVELDLPFLLE----------ERQERLARLRAMLDDA 143 (251)
T ss_pred --------------HHHHHHHHHHHHHHHHhcCCCCChH----------HHHHHHHHHHHhhhcc
Confidence 344777888888877761 1111 1235777777777554
No 423
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=27.32 E-value=9.1e+02 Score=27.02 Aligned_cols=164 Identities=20% Similarity=0.264 Sum_probs=80.2
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhh------cCCCchhHHHHHHH-------HHHHHHHHHHhHHHHHHhhccc--
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVY------DTDNANQKEKFEAD-------LKKEIKKLQRYRDQIKTWIQSS-- 69 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~------~a~n~nQKEKlE~D-------LKKEIKKLQR~RDQIKtW~~s~-- 69 (873)
..|.++|.-|=+-+..+|..+=.=|+++. +..|.++.+-..+| .++++.+||+-=|+++.=+.+.
T Consensus 23 ~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~ 102 (258)
T PF15397_consen 23 KELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQE 102 (258)
T ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665544444444444333333333 23345554444444 4566777777777777665543
Q ss_pred ------cccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHH
Q 002856 70 ------EIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELE 143 (873)
Q Consensus 70 ------eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~ 143 (873)
-.|||. |+-+.+--..|. ++.+.-| |-.+.+..|...-++.....|.
T Consensus 103 el~~L~TYkD~E----YPvK~vqIa~L~-rqlq~lk----------------------~~qqdEldel~e~~~~el~~l~ 155 (258)
T PF15397_consen 103 ELNFLSTYKDHE----YPVKAVQIANLV-RQLQQLK----------------------DSQQDELDELNEMRQMELASLS 155 (258)
T ss_pred HHHHHHHHhhhh----hhHHHHHHHHHH-HHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 234544 333332221111 1111110 1123334444444444555555
Q ss_pred HHHHHHHHHHhhhhcccC-C-------CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002856 144 SQIDSFEAELEGLTVKKG-K-------TRPPRLTHLETSITRHKAHIMKLELILRLLDND 195 (873)
Q Consensus 144 ~QiE~~EaE~E~Ls~KK~-K-------~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~ 195 (873)
.++..-..+|-+-...|- + ...-.-..+...|.+|+-+|..||..+..|.++
T Consensus 156 ~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~e 215 (258)
T PF15397_consen 156 RKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAE 215 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444443211110 0 000112357788999999999999988877653
No 424
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.26 E-value=5.6e+02 Score=32.13 Aligned_cols=68 Identities=24% Similarity=0.273 Sum_probs=47.9
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhh---------------cCCC--------------chhHHHHHHHHHHHHHHH
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVY---------------DTDN--------------ANQKEKFEADLKKEIKKL 55 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~---------------~a~n--------------~nQKEKlE~DLKKEIKKL 55 (873)
+-||.|...=|+||.+=+..-..+|+-|- +..+ +.+.++|+++=++-+.||
T Consensus 170 ~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl 249 (660)
T KOG4302|consen 170 NELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKL 249 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999988877666665443 2222 344677788888888888
Q ss_pred HHhHHHHHHhhcccccc
Q 002856 56 QRYRDQIKTWIQSSEIK 72 (873)
Q Consensus 56 QR~RDQIKtW~~s~eIK 72 (873)
|-+|++|-..-+.-++-
T Consensus 250 ~~l~~~~~~LWn~l~ts 266 (660)
T KOG4302|consen 250 QDLRTKLLELWNLLDTS 266 (660)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 88888887765554443
No 425
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=27.20 E-value=6.3e+02 Score=32.09 Aligned_cols=134 Identities=19% Similarity=0.167 Sum_probs=67.9
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccc--cccccccchhhHHHHHHH
Q 002856 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS--EIKDKKVSASYEQALVDA 87 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~--eIKDK~~~~~~~~~L~e~ 87 (873)
|-|.+++|..|-|....+--+|+...- .-||-.|--+..-|+|+|-.-.-.|...++. ++.+ |.+.
T Consensus 485 e~etl~~K~ge~i~~L~sE~~~lk~il--~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~----------le~~ 552 (961)
T KOG4673|consen 485 EAETLEEKKGELITKLQSEENKLKSIL--RDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAA----------LEAQ 552 (961)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----------HHHH
Confidence 445556666666666655555554321 1256666666667777776666555555552 2222 2222
Q ss_pred HHHHHHHHH-HHHHHHhhhccccccccccCCC------------CCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002856 88 RKLIEREME-RFKICEKETKTKAFSKEGLGQQ------------PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELE 154 (873)
Q Consensus 88 Rk~IE~~ME-rFK~vEKe~KtKafSkEGL~~~------------~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E 154 (873)
-..|+.... -++++-|+...|+ +.+... .++.-+|.....-.++|..-|.+|.+.++..|.-.|
T Consensus 553 ~~a~qat~d~a~~Dlqk~nrlkQ---dear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~e 629 (961)
T KOG4673|consen 553 ALAEQATNDEARSDLQKENRLKQ---DEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCE 629 (961)
T ss_pred HHHHHHhhhhhhhhHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 2233445555441 111100 001112233333457888888888888888888777
Q ss_pred hhhc
Q 002856 155 GLTV 158 (873)
Q Consensus 155 ~Ls~ 158 (873)
.|..
T Consensus 630 el~q 633 (961)
T KOG4673|consen 630 ELIQ 633 (961)
T ss_pred HHHh
Confidence 7743
No 426
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=27.12 E-value=7.7e+02 Score=26.11 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=23.0
Q ss_pred HhhhCCCCChhhhhhhhhHHHHHHHhCC
Q 002856 190 RLLDNDELSPEQVNDVKDLLEDYVERNQ 217 (873)
Q Consensus 190 RlL~N~~l~pe~V~~ikddieyYve~nq 217 (873)
-.|....|||..+..|...|+.-+++-.
T Consensus 168 evl~~~nldp~~~~~v~~~l~~~l~~KN 195 (201)
T PF13851_consen 168 EVLAAANLDPAALSQVSKKLEDVLDSKN 195 (201)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456678999999999999999998743
No 427
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.02 E-value=8.6e+02 Score=26.62 Aligned_cols=156 Identities=18% Similarity=0.200 Sum_probs=83.0
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH-HHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHH--
Q 002856 23 DVFDSIWNKVYDTDNANQKEKFEADLKKEIKK-LQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFK-- 99 (873)
Q Consensus 23 e~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKK-LQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK-- 99 (873)
..|-.+|..+. .-+.+++.+-.+|-.+|-. |.++-.++|.|.-....+.. +|+..+.....+||+-|
T Consensus 67 ~aw~~~l~e~~--~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~--------k~qk~~~~~~~~lekaKk~ 136 (253)
T cd07676 67 RAFLMTLNEMN--DYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGR--------KAQQHIETCWKQLESSKRR 136 (253)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 45666666665 3467899999988776644 88888999999988776653 34555555555555432
Q ss_pred ------HHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHH
Q 002856 100 ------ICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLET 173 (873)
Q Consensus 100 ------~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~ 173 (873)
+.|.. ...|.|--- ...+.+.+.+| ++.+.+.-..++|.. |. +=...|+.
T Consensus 137 Y~~acke~E~A--~~~~~ka~~--d~~~sk~~~eK-------------~k~~~~~~~~~~e~a-----Kn--~Y~~~l~~ 192 (253)
T cd07676 137 FERDCKEADRA--QQYFEKMDA--DINVTKADVEK-------------ARQQAQIRHQMAEDS-----KA--EYSSYLQK 192 (253)
T ss_pred HHHHHHHHHHH--HHHHHhccc--cccCCHHHHHH-------------HHHHHHHHHHHHHHH-----HH--HHHHHHHH
Confidence 22222 112211000 00111122112 222333333332211 00 00123444
Q ss_pred HH-HHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHH
Q 002856 174 SI-TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 214 (873)
Q Consensus 174 ~i-erhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve 214 (873)
.. ..++++..-|+.|+..|. +++-.+|..+++-+.-|.+
T Consensus 193 ~N~~q~~~Y~e~mp~vfd~lQ--~lee~Ri~~l~e~l~~~~~ 232 (253)
T cd07676 193 FNKEQHEHYYTHIPNIFQKIQ--EMEERRIGRVGESMKTYAE 232 (253)
T ss_pred HHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 33 233677777888887765 3556778888888887765
No 428
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=26.98 E-value=3.5e+02 Score=27.60 Aligned_cols=30 Identities=27% Similarity=0.628 Sum_probs=24.6
Q ss_pred ccchhhhHHHHhhhHHHhHH-----HHHHHHHHhh
Q 002856 4 SRKLQGEIDRVLKKVQEGVD-----VFDSIWNKVY 33 (873)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve-----~Fd~i~~K~~ 33 (873)
.++....+...|.++.+.++ .|.++|++--
T Consensus 59 ~~~~~~~~~~~f~~~a~~L~~~~~~~~~~~w~~~~ 93 (170)
T PF09548_consen 59 SRRSEGPIGEFFERVAERLEKNEGESFAEAWEEAV 93 (170)
T ss_pred HhcccchHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 46778899999999999887 7888988653
No 429
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.92 E-value=82 Score=28.73 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhCCCCChhh-hhhhhhHHHHHHHhCC
Q 002856 181 HIMKLELILRLLDNDELSPEQ-VNDVKDLLEDYVERNQ 217 (873)
Q Consensus 181 Hi~kLE~lLRlL~N~~l~pe~-V~~ikddieyYve~nq 217 (873)
-+.+||.|++.|++|.|.-++ +..+++-++.+-.+++
T Consensus 9 al~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~~ 46 (75)
T PRK14066 9 ALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSK 46 (75)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999544 4456666666655443
No 430
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=26.86 E-value=7.2e+02 Score=25.67 Aligned_cols=111 Identities=25% Similarity=0.349 Sum_probs=68.7
Q ss_pred hhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH-HHHhHHHHHHhhcc--ccccccccchhhHHHHHHHHHHHH
Q 002856 16 KKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKK-LQRYRDQIKTWIQS--SEIKDKKVSASYEQALVDARKLIE 92 (873)
Q Consensus 16 KKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKK-LQR~RDQIKtW~~s--~eIKDK~~~~~~~~~L~e~Rk~IE 92 (873)
++|.|....|..-++++....+. .++.+=||. ..-+.++|+.|+.+ .+|||+. ......|.+.|..|+
T Consensus 3 ~~~~e~~~~~~~~~~~~~~~~~~-------~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n--~~~~e~l~~~~~kl~ 73 (155)
T PF07464_consen 3 QHAQEFQKEFQEQVNKLLGSQNQ-------QEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDAN--PEAEEALKQLKTKLE 73 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTSS--S-------S-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-S--STHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC--hhHHHHHHHHHHHHH
Confidence 67899999999999999876332 233344443 45567777777765 3777754 455667777788887
Q ss_pred HHHHHHHHHHhhhccccccccccCCCCCCCch-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 93 REMERFKICEKETKTKAFSKEGLGQQPKTDPK-EKAKSETRDWLNNLVSELESQIDSFEAELEG 155 (873)
Q Consensus 93 ~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~-ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~ 155 (873)
+.-+.++. ..|. ++...+..+=|...|..|-.+++.+-.+|..
T Consensus 74 et~~~L~k--------------------~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~ 117 (155)
T PF07464_consen 74 ETAEKLRK--------------------ANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSE 117 (155)
T ss_dssp HHHHGGGG---------------------SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHh--------------------cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665421 1343 2233445666667777777777777666543
No 431
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=26.65 E-value=2.4e+02 Score=26.11 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=32.5
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHH
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIK 63 (873)
.|||.=|+.|+..+.|.-+... ...+..+|+.++.-=++--.-|.-||.-||
T Consensus 12 EkLQ~mi~nTieNi~eAee~l~-------~~~~~~~~~~i~eKN~RR~esi~~~R~EIk 63 (73)
T PRK03830 12 EKLQEMIQNTIENIEEAEETIA-------EEDSEKEKQAIEEKNERREESIDGMRSEIK 63 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5899999999888887766544 344556666666544444444555554443
No 432
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=26.63 E-value=5.5e+02 Score=27.98 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=15.6
Q ss_pred CchHHhHHHHHHHHHHHHHHHHH
Q 002856 122 DPKEKAKSETRDWLNNLVSELES 144 (873)
Q Consensus 122 Dp~ekek~E~~~wL~~~IdeL~~ 144 (873)
++...-+.+...|+...|+.|..
T Consensus 202 ~~~~~lr~~~~~~l~~~i~~L~~ 224 (367)
T PF04286_consen 202 DPDHPLRQEIDQKLRELIERLLT 224 (367)
T ss_pred CcccHhHHHHHHHHHHHHHHHhc
Confidence 45556666677777777777764
No 433
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=26.54 E-value=5.6e+02 Score=32.12 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 002856 139 VSELESQIDSFEAELEGL 156 (873)
Q Consensus 139 IdeL~~QiE~~EaE~E~L 156 (873)
|+.|+.+++.+++++..+
T Consensus 243 i~~l~~~l~~l~~~~~~l 260 (670)
T KOG0239|consen 243 IQALQQELEELKAELKEL 260 (670)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666665554
No 434
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=26.51 E-value=8.3e+02 Score=26.24 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhhhhhhhHHHHHHHh
Q 002856 166 PRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLLEDYVER 215 (873)
Q Consensus 166 ~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~-pe~V~~ikddieyYve~ 215 (873)
.|.+.-...+.|...|+.+|+..+. +.... -..+.+|++.|+.++..
T Consensus 143 ~R~erE~~i~krl~e~~~~l~~~i~---~Ek~~Re~~~~~l~~~le~~~~~ 190 (247)
T PF06705_consen 143 EREEREENILKRLEEEENRLQEKIE---KEKNTRESKLSELRSELEEVKRR 190 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566777777777665543 33333 45566788888888763
No 435
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=26.37 E-value=9.5e+02 Score=27.53 Aligned_cols=31 Identities=39% Similarity=0.367 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcccccc
Q 002856 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIK 72 (873)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~eIK 72 (873)
||-=-||-++.=-|.|||=-||-=+.++--|
T Consensus 156 EKSvKDLqRctvSL~RYr~~lkee~d~S~k~ 186 (302)
T PF07139_consen 156 EKSVKDLQRCTVSLTRYRVVLKEEMDSSIKK 186 (302)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4445566666666666666666555554333
No 436
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.05 E-value=9e+02 Score=29.98 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHH---HHHHHHHHHHhhhccccccccccCC
Q 002856 78 ASYEQALVDARKLIE---REMERFKICEKETKTKAFSKEGLGQ 117 (873)
Q Consensus 78 ~~~~~~L~e~Rk~IE---~~MErFK~vEKe~KtKafSkEGL~~ 117 (873)
+.|+++|.....-|| .+.|+-+.-..+-| |.--++|++.
T Consensus 290 ~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk-~~Ie~Q~iS~ 331 (581)
T KOG0995|consen 290 QHMEKKLEMLKSEIEEKEEEIEKLQKENDELK-KQIELQGISG 331 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCH
Confidence 566666666555554 45555555555554 3344556653
No 437
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=25.79 E-value=1.2e+02 Score=29.53 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhc
Q 002856 45 EADLKKEIKKLQRYRDQIKTWIQ 67 (873)
Q Consensus 45 E~DLKKEIKKLQR~RDQIKtW~~ 67 (873)
..+|.++|..||+.++.|..++.
T Consensus 88 ~~~l~~~i~~l~~~~~~l~~~~~ 110 (133)
T cd04787 88 LAETERRIKELLKLRDRMQQAVS 110 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888887765443
No 438
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=25.67 E-value=8.1e+02 Score=28.80 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 002856 43 KFEADLKKEIKKLQRYRD 60 (873)
Q Consensus 43 KlE~DLKKEIKKLQR~RD 60 (873)
-+|..-.|-||+|.--|+
T Consensus 111 AaE~khrKli~dLE~dRe 128 (561)
T KOG1103|consen 111 AAEKKHRKLIKDLEADRE 128 (561)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555544443
No 439
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=25.52 E-value=3.5e+02 Score=26.98 Aligned_cols=62 Identities=29% Similarity=0.481 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHH
Q 002856 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 209 (873)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddi 209 (873)
+..+|.-.-|.+|+++++.+|++++. ++...-+++.-++..|+ .+|+.+...|
T Consensus 3 ~~a~~al~ki~~l~~~~~~i~~~~~~--------------~I~~i~~~~~~~~~~l~-------------~~i~~l~~~l 55 (149)
T PF07352_consen 3 EEADWALRKIAELQREIARIEAEAND--------------EIARIKEWYEAEIAPLQ-------------NRIEYLEGLL 55 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCHHHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Confidence 34567778899999999999998743 23333344444444443 4566677777
Q ss_pred HHHHHhCCC
Q 002856 210 EDYVERNQD 218 (873)
Q Consensus 210 eyYve~nqd 218 (873)
..|.+.|-+
T Consensus 56 ~~y~e~~r~ 64 (149)
T PF07352_consen 56 QAYAEANRD 64 (149)
T ss_dssp HHHHHCTHH
T ss_pred HHHHHHCHH
Confidence 788887754
No 440
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=25.51 E-value=1.6e+02 Score=26.08 Aligned_cols=20 Identities=45% Similarity=0.556 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 002856 138 LVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 138 ~IdeL~~QiE~~EaE~E~Ls 157 (873)
.|++|+..|..|++||+.+.
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~ 41 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLE 41 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999998874
No 441
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=25.32 E-value=6e+02 Score=25.51 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 002856 83 ALVDARKLIEREMERF 98 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErF 98 (873)
-|.++...|-.+||.+
T Consensus 40 ~m~~A~~~v~kql~~v 55 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQV 55 (126)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6888888888888885
No 442
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=25.19 E-value=2.9e+02 Score=33.54 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=15.5
Q ss_pred HHHHHHHHhHHHHHHhhcccc
Q 002856 50 KEIKKLQRYRDQIKTWIQSSE 70 (873)
Q Consensus 50 KEIKKLQR~RDQIKtW~~s~e 70 (873)
.|.++|+..=++...|+..++
T Consensus 553 ~e~~~i~~~l~~~~~wL~~~~ 573 (627)
T PRK00290 553 DEKEKIEAAIKELKEALKGED 573 (627)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 445677777788889998763
No 443
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=25.06 E-value=6.7e+02 Score=30.76 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 127 AKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 127 ek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
+..|+.+-|...|+-|++-+..+-.-.|.|
T Consensus 252 e~~e~~~kl~~~l~~l~~~~~rvss~AE~l 281 (538)
T PF05781_consen 252 ESREIIQKLQKSLDVLHQCATRVSSRAEML 281 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555554444444444
No 444
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=24.88 E-value=5.3e+02 Score=27.58 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CChhhhhhhhhH
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE--LSPEQVNDVKDL 208 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~--l~pe~V~~ikdd 208 (873)
-..-|..-+.+|..-+-..|+||-.|+.- =.++++++.|...+-.+...+.=|..+..|. |.|++...+++.
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~------Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~ 160 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSSA------LTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYRE 160 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 44557778888888888899998887411 1346677777777777777777777777665 778887766665
Q ss_pred HHHHHH
Q 002856 209 LEDYVE 214 (873)
Q Consensus 209 ieyYve 214 (873)
-+.|..
T Consensus 161 y~~~~~ 166 (201)
T KOG4603|consen 161 YQKYCK 166 (201)
T ss_pred HHHHHH
Confidence 555543
No 445
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=24.84 E-value=4.9e+02 Score=27.16 Aligned_cols=117 Identities=21% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHhHHHHHHhhccc--cccccc-----cchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHh
Q 002856 55 LQRYRDQIKTWIQSS--EIKDKK-----VSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 127 (873)
Q Consensus 55 LQR~RDQIKtW~~s~--eIKDK~-----~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~eke 127 (873)
+.|+.+.||..++.- .+.|.. ...-++..|.+.|+.+...|-.-|.+|++ .+..
T Consensus 3 f~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~-------------------~~~~ 63 (221)
T PF04012_consen 3 FKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERK-------------------LDEA 63 (221)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002856 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (873)
Q Consensus 128 k~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N 194 (873)
..++..|-.....-|... +-++-.....+++.-...++.++..++...-++.+|+.-|+-|..
T Consensus 64 ~~~~~~~~~~A~~Al~~g----~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~ 126 (221)
T PF04012_consen 64 EEEAEKWEKQAELALAAG----REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEA 126 (221)
T ss_pred HHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 446
>PF00669 Flagellin_N: Bacterial flagellin N-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []. They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1IO1_A 1UCU_A 3A5X_A 3V47_C 2D4X_A 3PWX_B 3K8V_A 2ZBI_B 3K8W_A.
Probab=24.71 E-value=4.9e+02 Score=24.84 Aligned_cols=62 Identities=16% Similarity=0.325 Sum_probs=41.7
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccc
Q 002856 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD 73 (873)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKD 73 (873)
.+++|.+|+++-.+|.-|. |+.........--.=..|+++|..|.++.+-|.....--++-+
T Consensus 14 l~~~~~~l~~~~~qlsTG~--------k~~~~sd~p~~~~~~~~l~~~~~~~~~~~~n~~~~~~~l~~~~ 75 (139)
T PF00669_consen 14 LNKLQSNLNKLQEQLSTGK--------KINSPSDDPAAASRALSLRSQISRLEQYQRNIDDAKSRLSTAE 75 (139)
T ss_dssp HHHHHHHHHHHHHHHHTS----------TTTCGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--------CcccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888775 3444433344555567899999999999888766554444333
No 447
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=24.71 E-value=2.5e+02 Score=25.74 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHH----HHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHh
Q 002856 140 SELESQIDSFEAELEGLTVKKGKTRPPRLTHLET----SITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (873)
Q Consensus 140 deL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~----~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~ 215 (873)
|+|..+++.+-.+++.|............+++.. .++.-+.++..+-.-+ -+++.++-+.++.||..
T Consensus 1 e~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~~~~~V~e 71 (94)
T PF05957_consen 1 EDLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQA---------REQAREAAEQTEDYVRE 71 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 3577777777777777742111111122233333 2232233333222222 36777888889999986
Q ss_pred C
Q 002856 216 N 216 (873)
Q Consensus 216 n 216 (873)
|
T Consensus 72 ~ 72 (94)
T PF05957_consen 72 N 72 (94)
T ss_pred C
Confidence 5
No 448
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.68 E-value=4.6e+02 Score=27.82 Aligned_cols=92 Identities=23% Similarity=0.353 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcccccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCC
Q 002856 43 KFEADLKKEIKKLQRYRDQIKTWIQSSEIK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT 121 (873)
Q Consensus 43 KlE~DLKKEIKKLQR~RDQIKtW~~s~eIK-DK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~ 121 (873)
=||--++.=-|---|+|+|+|.-...+-+- |- ..+|.-+-..|-+.||-|.-. ++-||--.-..+.+.
T Consensus 99 yLE~smqaF~~qQs~lreq~~~~~~~~~~~~~~------~~p~~~~eeq~rrn~~mf~~a-----M~~f~pf~~~pa~~~ 167 (193)
T COG5394 99 YLEHSMQAFSDQQSRLREQMKKAFGGNPLGPNM------ATPLQMWEEQIRRNMEMFQQA-----MQMFSPFAKAPAPKE 167 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc------cchHHHHHHHHHHhHHHHHHH-----HHhcCcccCCCCccc
Confidence 356666666677789999999999988654 31 227777777788888887543 344554444332232
Q ss_pred CchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002856 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAELE 154 (873)
Q Consensus 122 Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E 154 (873)
-|++ ..+-|++|..|+..+...+.
T Consensus 168 ~~~~---------~~~d~~~lk~ql~a~Q~kld 191 (193)
T COG5394 168 APKP---------MSDDLDELKGQLRAMQPKLD 191 (193)
T ss_pred cCcc---------chhHHHHHHHHHHHhhhhhc
Confidence 2222 12346677777766655443
No 449
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.56 E-value=1.7e+03 Score=29.12 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 132 RDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
..++++.|-+|...+-.+++..++-
T Consensus 864 ~k~~~nli~~ltEk~~sl~~qadse 888 (970)
T KOG0946|consen 864 IKFGNNLIKELTEKISSLEAQADSE 888 (970)
T ss_pred hhhhhhHHHHHhhhhhhHHHhhcch
Confidence 5788899999999988888777654
No 450
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=24.44 E-value=7e+02 Score=27.11 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 002856 41 KEKFEADLKK 50 (873)
Q Consensus 41 KEKlE~DLKK 50 (873)
|++||.+=|+
T Consensus 127 Kk~Ye~~Cke 136 (240)
T cd07672 127 KKNYEQKCRD 136 (240)
T ss_pred HHHHHHHHHH
Confidence 4555544333
No 451
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=24.35 E-value=25 Score=43.11 Aligned_cols=52 Identities=23% Similarity=0.379 Sum_probs=0.0
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC-----chhHHHHHHHHHHHHHHHH
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN-----ANQKEKFEADLKKEIKKLQ 56 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n-----~nQKEKlE~DLKKEIKKLQ 56 (873)
+.|+..+++.++++.+-..--..++++...... .++.+-++.+|-+++++||
T Consensus 96 ~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L~ 152 (722)
T PF05557_consen 96 RELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEEELEQLKRKLEEEKRRLQ 152 (722)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544444444443322221 2223344444455555554
No 452
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=24.30 E-value=3e+02 Score=34.24 Aligned_cols=98 Identities=18% Similarity=0.345 Sum_probs=50.9
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHH
Q 002856 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQA 83 (873)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~ 83 (873)
.+++..+|+++++.. |...|+ +... ....+..-.+|+++|+.|++-.++++.-+..- . ..+...
T Consensus 199 ~~~~~~kv~~il~~~--~f~~~~--~p~~-----~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~--~-----~~~~~~ 262 (759)
T PF01496_consen 199 GKELEEKVKKILRSF--GFERYD--LPED-----EGTPEEAIKELEEEIEELEKELEELEEELKKL--L-----EKYAEE 262 (759)
T ss_dssp EGGGHHHHHHHHHTT--T--B------GG-----GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-----HHHHHH
T ss_pred chhhHHHHHHHhhcc--CceecC--CCCc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-----HHHHHH
Confidence 356677788888776 444443 1111 11233444455555555555544444433310 0 012236
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc--cccccccCC
Q 002856 84 LVDARKLIEREMERFKICEKETKTK--AFSKEGLGQ 117 (873)
Q Consensus 84 L~e~Rk~IE~~MErFK~vEKe~KtK--afSkEGL~~ 117 (873)
|..++..++.+-++|+.+.+-..++ .|-=+|-..
T Consensus 263 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~GWvP 298 (759)
T PF01496_consen 263 LEAWYEYLRKEKEIYEALNKFASTETNVFILEGWVP 298 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---SEEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccEEEEEEecc
Confidence 7777777777778888887776665 566666653
No 453
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=24.30 E-value=47 Score=28.00 Aligned_cols=32 Identities=19% Similarity=0.486 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002856 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVK 159 (873)
Q Consensus 128 k~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~K 159 (873)
+.|+.+-|...-|.++..||.++.+|+.|..|
T Consensus 3 ~~EAkelLqe~~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 3 RAEAKELLQEHYDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp ------------THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Confidence 45677778888888888888888888777544
No 454
>PRK07737 fliD flagellar capping protein; Validated
Probab=24.05 E-value=1.3e+03 Score=27.71 Aligned_cols=27 Identities=19% Similarity=0.508 Sum_probs=23.1
Q ss_pred hhhHHHHhhhHHHhHHHHHHHHHHhhc
Q 002856 8 QGEIDRVLKKVQEGVDVFDSIWNKVYD 34 (873)
Q Consensus 8 Q~EIDr~lKKV~EGve~Fd~i~~K~~~ 34 (873)
..+.|.+.++|++=|+.|+.+.+.+..
T Consensus 267 ~~D~~~~~~~i~~FV~aYN~l~~~i~~ 293 (501)
T PRK07737 267 ATDVDGIFNKIKDFVDKYNELIDKINA 293 (501)
T ss_pred ecChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999888765
No 455
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=24.04 E-value=1.1e+03 Score=26.72 Aligned_cols=66 Identities=23% Similarity=0.288 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCc------hhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002856 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRP------PRLTHLETSITRHKAHIMKLELILRLLDND 195 (873)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~------~r~~~le~~ierhk~Hi~kLE~lLRlL~N~ 195 (873)
++..=++.=|+.+...|-.+|.|...+..|--+.+. +....+...+++.+--+.+||.|.|.|...
T Consensus 237 e~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 237 EVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344444444555555555555554444222222221 123335556777888899999999999754
No 456
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=23.93 E-value=1.6e+02 Score=27.42 Aligned_cols=24 Identities=46% Similarity=0.549 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccccccccc
Q 002856 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK 75 (873)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~ 75 (873)
+..+..+|+=|++|..| |||||=.
T Consensus 32 ~~~~~~v~~hI~lLheY----------NeiKD~g 55 (83)
T PF07061_consen 32 EDPEKIVKRHIKLLHEY----------NEIKDIG 55 (83)
T ss_pred cCHHHHHHHHHHHHHHH----------hHHHHHH
Confidence 46778899999999988 7889855
No 457
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=23.84 E-value=1.3e+02 Score=28.00 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhhCCCCChhh-hhhhhhHHHHHHHhC
Q 002856 178 HKAHIMKLELILRLLDNDELSPEQ-VNDVKDLLEDYVERN 216 (873)
Q Consensus 178 hk~Hi~kLE~lLRlL~N~~l~pe~-V~~ikddieyYve~n 216 (873)
..--+..||.|++.|+||.|.-|+ |..+++-++.|-.+.
T Consensus 12 fE~~l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~ 51 (81)
T COG1722 12 FEEALAELEEIVESLESGELPLEEALKEFERGMALYKECQ 51 (81)
T ss_pred HHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHH
Confidence 344567789999999999998555 445777777776643
No 458
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=23.83 E-value=1.7e+03 Score=29.04 Aligned_cols=146 Identities=18% Similarity=0.278 Sum_probs=70.4
Q ss_pred HHHhHHHHHHhhccccccccc-cchhhHHHHHHHHHHHHHHH--------HHHHHHHhhhccccccccccCCCCC-CCch
Q 002856 55 LQRYRDQIKTWIQSSEIKDKK-VSASYEQALVDARKLIEREM--------ERFKICEKETKTKAFSKEGLGQQPK-TDPK 124 (873)
Q Consensus 55 LQR~RDQIKtW~~s~eIKDK~-~~~~~~~~L~e~Rk~IE~~M--------ErFK~vEKe~KtKafSkEGL~~~~k-~Dp~ 124 (873)
+..-=||-..|+.+..+.|+. +.+-.+..|.++|++.+..- +.-+.|++.+ ..+.. |....+ .+|.
T Consensus 384 ~~~kl~qA~~wl~~p~~dd~g~g~~AL~~lv~e~~~~A~~~~~~~R~~Il~lc~~i~~l~--~qL~d--L~~~~~~~spe 459 (968)
T PF01044_consen 384 VAGKLEQAQRWLANPGVDDGGAGRQALRDLVEEARKLADSSDPEEREEILELCDEIEQLT--NQLAD--LEMRGEGDSPE 459 (968)
T ss_dssp HHHHHHHHHHHHCSTSS--SCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHH--HHHHH--HCHCSCCSSHH
T ss_pred cccccccccccccccccccHHHHHHHHHHHHHHHHHHHhccccchHHhHHHHHHHHHHhc--chhhh--hhhccCCCccc
Confidence 344457899999999887665 33334444455554433211 1111122211 11111 111111 1242
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH--Hh----------hh--hcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAE--LE----------GL--TVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 190 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE--~E----------~L--s~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLR 190 (873)
..+...-|...+.+|++++..-=.+ .| .| ..+..-..+-|.+.++.....-..|..+|-.+-+
T Consensus 460 ---a~~la~~L~~~l~~L~~~l~~a~~~qv~d~F~d~~~pL~~L~~Aa~~~~~~~g~e~~~~~~a~~F~~ha~~l~~vA~ 536 (968)
T PF01044_consen 460 ---AKALAEQLSQKLDDLRQQLQKAVVDQVSDTFTDTTTPLKELVEAAKAPSGTPGREENFEEKAQNFQEHADQLVEVAR 536 (968)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTSSSHHHHHHHHHHHT-TTSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344556778888887775431110 01 11 0122112234556677777777777777777777
Q ss_pred hhhCCC-CChhhhhhhhh
Q 002856 191 LLDNDE-LSPEQVNDVKD 207 (873)
Q Consensus 191 lL~N~~-l~pe~V~~ikd 207 (873)
++-.-. -+.+.|+.|+.
T Consensus 537 lva~~s~~d~~~v~~I~~ 554 (968)
T PF01044_consen 537 LVAAMSCTDEETVKEIRH 554 (968)
T ss_dssp HHHHHSS-HHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 777655 45666666654
No 459
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=23.76 E-value=1.5e+02 Score=28.68 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhc
Q 002856 45 EADLKKEIKKLQRYRDQIKTWIQ 67 (873)
Q Consensus 45 E~DLKKEIKKLQR~RDQIKtW~~ 67 (873)
..+|.++|..||+.++.|+.++.
T Consensus 88 ~~~l~~~i~~L~~~~~~l~~~~~ 110 (127)
T cd01108 88 IAELERKIAELQAMRRTLQQLAD 110 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999988875
No 460
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=23.73 E-value=2.3e+02 Score=29.14 Aligned_cols=55 Identities=31% Similarity=0.379 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHH
Q 002856 134 WLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYV 213 (873)
Q Consensus 134 wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYv 213 (873)
=+...|..|+..|+....|++.|.. ..+.-|..+|.| .|.|.++||+|+.=|
T Consensus 58 ~~~~~v~~~~~~i~~k~~El~~L~~------------------~d~~kv~~~E~L----------~d~v~eLkeel~~el 109 (146)
T PF05852_consen 58 EIKNKVSSLETEISEKKKELSHLKK------------------FDRKKVEDLEKL----------TDRVEELKEELEFEL 109 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------------------cCHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 3566788888888888888776621 122223333433 367777777777766
Q ss_pred HhC
Q 002856 214 ERN 216 (873)
Q Consensus 214 e~n 216 (873)
+.-
T Consensus 110 ~~l 112 (146)
T PF05852_consen 110 ERL 112 (146)
T ss_pred HHH
Confidence 643
No 461
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=23.71 E-value=8.5e+02 Score=25.73 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002856 171 LETSITRHKAHIMKLELILRL 191 (873)
Q Consensus 171 le~~ierhk~Hi~kLE~lLRl 191 (873)
-...+++.+.|..+|+.+.+-
T Consensus 129 ~~~~~~~l~~H~~kl~~~~ke 149 (177)
T PF03234_consen 129 GKAELEELQEHRAKLEKEQKE 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777776664
No 462
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.62 E-value=7.1e+02 Score=26.69 Aligned_cols=48 Identities=10% Similarity=0.221 Sum_probs=27.8
Q ss_pred CchhhHHHHHHH--HHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHH
Q 002856 164 RPPRLTHLETSI--TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 214 (873)
Q Consensus 164 ~~~r~~~le~~i--erhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve 214 (873)
++.-+++++..+ +|+.|+-..|+.|+.+= .|..-.--+|-|-|--|+.
T Consensus 131 k~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in---~iq~kKkfefle~ll~~m~ 180 (200)
T cd07639 131 KAQEVEEAAAALLGARATFRDRALDYALQIN---VIEDKKKFDILEFMLQLME 180 (200)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344555655544 78999999999998641 1222222235555555554
No 463
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=23.62 E-value=3.9e+02 Score=33.30 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=54.3
Q ss_pred HhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 002856 126 KAKSETRDWLNNLV-----------SELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD- 193 (873)
Q Consensus 126 kek~E~~~wL~~~I-----------deL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~- 193 (873)
.-..|+..|+.... ..|+.-+|++...++++..+ ..+.. -=-.+-..++|.+-++.|+|.||.+|.
T Consensus 188 al~~e~~~~~~~~~~~~~~~~~~d~~~l~vll~qCr~~v~~v~~~-~~~~G-~Sv~l~~~L~Rl~Q~L~Ri~~Ll~~l~~ 265 (643)
T PF10136_consen 188 ALQREVEAFLEAYRQQDEDPDSEDLKHLRVLLDQCREQVDRVRKH-LEKYG-VSVSLVFLLERLRQQLDRIELLLDLLVD 265 (643)
T ss_pred HHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHh-ccccC-eeHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34455666665543 44566678888888877321 11111 113577789999999999999999999
Q ss_pred -CCCCChhhhhhhhhHHHHHHHhC
Q 002856 194 -NDELSPEQVNDVKDLLEDYVERN 216 (873)
Q Consensus 194 -N~~l~pe~V~~ikddieyYve~n 216 (873)
...-...-+.-+++-|.+--+.|
T Consensus 266 ~~~~~~~~~~~L~~~Lv~~~~~r~ 289 (643)
T PF10136_consen 266 DSPDRRRAIVRLFKELVRAECRRN 289 (643)
T ss_pred cCchhhHHHHHHHHHHHHHHHHhc
Confidence 22223344444555555554433
No 464
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=23.60 E-value=2.3e+02 Score=34.57 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=22.4
Q ss_pred HHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHH
Q 002856 50 KEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMER 97 (873)
Q Consensus 50 KEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MEr 97 (873)
.+-++++..=++.+.|+..+| +. .+.+.++.++..|..
T Consensus 557 ~~~~~~~~~l~~~~~~l~~~d---~~-------~~~~~~~~l~~~~~~ 594 (616)
T PRK05183 557 AERAAIDAAMAALREVAQGDD---AD-------AIEAAIKALDKATQE 594 (616)
T ss_pred HHHHHHHHHHHHHHHHHhcCC---HH-------HHHHHHHHHHHHHHH
Confidence 344566667777888998763 33 444444555544443
No 465
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.57 E-value=1.7e+02 Score=27.60 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhHHHHHHhh
Q 002856 46 ADLKKEIKKLQRYRDQIKTWI 66 (873)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~ 66 (873)
..|..+|+.|++.++.|..++
T Consensus 89 ~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 89 EELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777776655
No 466
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.55 E-value=2e+02 Score=27.42 Aligned_cols=67 Identities=22% Similarity=0.296 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG-KTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (873)
Q Consensus 127 ek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~-K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~ 193 (873)
++.+..+=|.+.++.+.+.+..+|.+++.|..++- -+=.-++.+++..+..-.-++.-++.++++|=
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444455677788889999999999988843211 00012456666666666677777777776664
No 467
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=23.53 E-value=1e+03 Score=26.46 Aligned_cols=104 Identities=14% Similarity=0.183 Sum_probs=61.2
Q ss_pred HHHHhhhHHHhHHHHHHHHHHhhc------------CCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccch
Q 002856 11 IDRVLKKVQEGVDVFDSIWNKVYD------------TDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSA 78 (873)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~~K~~~------------a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~ 78 (873)
--+.||+|.+-...|+..-.+-.. .-++.|-+|+.+-|+|....+++.++.-..=+
T Consensus 128 w~k~~kk~~~sKk~Y~~~ck~e~~a~~~e~~~k~~~~~~~~q~~K~~~kleK~~~~~~k~~~~Y~~~v------------ 195 (258)
T cd07681 128 WVKKLKEVESSKKGYHAARKDERTAQTRETHAKADSTVSQEQLRKLQDRVEKCTQEAEKAKEQYEKAL------------ 195 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 334566777666666644432221 12234677888888887777776655443221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002856 79 SYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEA 151 (873)
Q Consensus 79 ~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~Ea 151 (873)
..|..+|..-++.|+.. ||+- --.|.+ =.+||++++..+++-++....
T Consensus 196 ---~~L~~~~~~w~e~m~~~--~d~~-----------------Q~~Eee---Ri~flK~~L~~~~~~l~~~~~ 243 (258)
T cd07681 196 ---EELNRYNPRYMEDMEQA--FEIC-----------------QEAERK---RLCFFKEMLLDLHQHLDLSSS 243 (258)
T ss_pred ---HHHHHhhHHHHHHHHHH--HHHH-----------------HHHHHH---HHHHHHHHHHHHHHHHhhhcc
Confidence 15777888888888752 2220 001332 357888888888887766543
No 468
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=23.46 E-value=4.6e+02 Score=32.85 Aligned_cols=130 Identities=22% Similarity=0.344 Sum_probs=0.0
Q ss_pred ccccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHH----------------HHHHHHhHHHHHHh
Q 002856 2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKE----------------IKKLQRYRDQIKTW 65 (873)
Q Consensus 2 aa~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKE----------------IKKLQR~RDQIKtW 65 (873)
.+.|.|-.+++.++.=+.||-++|..+.+-+++.++.= -+||.-++-. +.-|.+-=.|+..
T Consensus 29 ~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai--~~~l~lIe~~v~~ie~~q~r~di~~~~~dl~e~vsqm~~- 105 (683)
T PF08580_consen 29 NAVKALSGAAEQILDWIQKAKDVLYGLREGLEEIDSAI--SRFLDLIEVYVSAIEDLQLREDIANSLFDLIEEVSQMEL- 105 (683)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHhhccccccccccccccccHHHHHHHHHHHHH-
Q ss_pred hccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHH
Q 002856 66 IQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQ 145 (873)
Q Consensus 66 ~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~Q 145 (873)
+||- .|.-.++.+|.+||= .+-.+++|+.|...
T Consensus 106 ----~vK~---------~L~~vK~qveiAmE~----------------------------------~EL~~~vlg~l~~E 138 (683)
T PF08580_consen 106 ----DVKK---------TLISVKKQVEIAMEW----------------------------------EELWNDVLGDLDNE 138 (683)
T ss_pred ----HHHH---------HHHHHHHHHHHHHhH----------------------------------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 146 IDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (873)
Q Consensus 146 iE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (873)
||.+-..+=.+..+|-+.-- ||..-+..||.|+..+
T Consensus 139 Ie~~~~~vfemeE~R~~Sp~-----------~~~lp~~~Le~Ive~~ 174 (683)
T PF08580_consen 139 IEECIRLVFEMEEKRHSSPV-----------RHGLPIFELETIVEEM 174 (683)
T ss_pred HHHHHHHHHHHHHHHccCCc-----------ccCCCcccHHHHHHhc
No 469
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.37 E-value=2.9e+02 Score=29.98 Aligned_cols=69 Identities=28% Similarity=0.358 Sum_probs=46.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC-----CchhhHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 002856 124 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKT-----RPPRLTHLETSI---TRHKAHIMKLELILRLLD 193 (873)
Q Consensus 124 ~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~-----~~~r~~~le~~i---erhk~Hi~kLE~lLRlL~ 193 (873)
++++|.+..+|....=+.|.++++...+|-|.+- +..+. .=+|+.+|=.+. ..|---+.||-.||=.|.
T Consensus 134 rekAkKelddwy~~~~ek~~k~~~~nk~eee~~~-~e~~~~~~gTeWErv~kL~D~n~k~sk~gkD~SRlrslL~~LK 210 (216)
T KOG4031|consen 134 REKAKKELDDWYDQQNEKLEKTKANNKAEEEALV-KENEEFSPGTEWERVAKLCDFNPKSSKQGKDVSRLRSLLISLK 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HhhcccCCCchHHHHHHHHcCCccchhccccHHHHHHHHHHhh
Confidence 6889999999999999999999988877766662 22221 114665554433 456666777766554443
No 470
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=23.37 E-value=7.9e+02 Score=26.40 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=22.8
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002856 24 VFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (873)
Q Consensus 24 ~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (873)
.||+.-.++. .+|..+||=+|-+..++|.|+.-+.+
T Consensus 12 ~F~~~e~~f~---------~~e~~~~kL~k~~k~y~da~~~l~~~ 47 (224)
T cd07591 12 EFEFEERRYR---------TMEKASTKLQKEAKGYLDSLRALTSS 47 (224)
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666655552 45667777777777777777754443
No 471
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=23.28 E-value=1.4e+02 Score=28.75 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002856 43 KFEADLKKEIKKLQRYRDQIKTWIQS 68 (873)
Q Consensus 43 KlE~DLKKEIKKLQR~RDQIKtW~~s 68 (873)
+...+|+.+|..|+++|+.|..|+..
T Consensus 86 ~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (127)
T TIGR02044 86 EKVAEIERKISELQSMRDQLEALAQA 111 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33568999999999999999988864
No 472
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=23.21 E-value=2.9e+02 Score=31.94 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=27.9
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchh-HHHHHHHHHHHHHHHHHhHHHH
Q 002856 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ-KEKFEADLKKEIKKLQRYRDQI 62 (873)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQ-KEKlE~DLKKEIKKLQR~RDQI 62 (873)
.+|+..|..+.-.+++|=++..+.+-.+..+..+.-. .....+++.+|+++..+...+.
T Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (471)
T PF04791_consen 198 AAKLEDEAAEAKEKLDDIIEKLRRLRRILRDVEELRSELDTILNELPKEIQELIESSNQE 257 (471)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHhhHHHHHHHHhccccc
Confidence 3566666666666666666665555222222222211 1222345555555544333333
No 473
>PF04220 YihI: Der GTPase activator (YihI); InterPro: IPR007336 This entry contains Escherichia coli (strain K12) YihI. YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor and can therefore be considered a GAP (GTPase activating)-like protein. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI []. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit []. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI [].
Probab=23.12 E-value=1.3e+02 Score=31.55 Aligned_cols=35 Identities=31% Similarity=0.461 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhCCC-CChhh---hhhhhhHHHHHHHhCC
Q 002856 183 MKLELILRLLDNDE-LSPEQ---VNDVKDLLEDYVERNQ 217 (873)
Q Consensus 183 ~kLE~lLRlL~N~~-l~pe~---V~~ikddieyYve~nq 217 (873)
.+|..||..|++|+ |+.++ |+.--+.|+..++.-.
T Consensus 108 ~rL~~LLdrle~Ge~Ls~~dQ~yvD~~LdRi~~Lm~~LG 146 (169)
T PF04220_consen 108 ERLNQLLDRLEEGETLSAEDQKYVDEKLDRIEELMEELG 146 (169)
T ss_pred HHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 57889999999998 55433 4456667777776543
No 474
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=23.11 E-value=3e+02 Score=31.88 Aligned_cols=47 Identities=26% Similarity=0.334 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhh
Q 002856 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDS-FEAELEGLT 157 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~-~EaE~E~Ls 157 (873)
.+.+++..||++++.|....+..+ .+| +|..|+++.+. .+.|+|++-
T Consensus 314 ~~~~a~~ii~~~~~~f~~w~~~~~--------------~~p--------------~I~~lr~~~~~i~~~el~~~~ 361 (417)
T TIGR01035 314 EAEKAEEIVEEETAEFKQWLRSLE--------------VEP--------------TIKALRSLAEIVREKELEKAL 361 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--------------chH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888877766542 233 67777777755 467777764
No 475
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=23.04 E-value=6.9e+02 Score=24.14 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002856 83 ALVDARKLIEREMERFKICE 102 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vE 102 (873)
.+.+.++.++..|+..+.++
T Consensus 94 ~~~~r~~~L~~~~~~~~~~~ 113 (213)
T cd00176 94 LAEERRQRLEEALDLQQFFR 113 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666655544
No 476
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.03 E-value=1.5e+03 Score=30.21 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=25.4
Q ss_pred HHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 100 ICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEG 155 (873)
Q Consensus 100 ~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~ 155 (873)
.++++||.+.=+..++-. +-.+-.+-..|+...|+++..++..+..-+-+
T Consensus 385 ~ln~~~r~~~~~ld~~~~------~~~elE~r~k~l~~sver~~~~~~~L~~~i~s 434 (1141)
T KOG0018|consen 385 VLNRNMRSDQDTLDHELE------RRAELEARIKQLKESVERLDKRRNKLAAKITS 434 (1141)
T ss_pred HHHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665544444321 12233334556666666666666555544433
No 477
>PRK12705 hypothetical protein; Provisional
Probab=23.03 E-value=8.1e+02 Score=29.82 Aligned_cols=26 Identities=12% Similarity=0.331 Sum_probs=17.4
Q ss_pred HHhhhCCCCChhhhhhhhhHHHHHHH
Q 002856 189 LRLLDNDELSPEQVNDVKDLLEDYVE 214 (873)
Q Consensus 189 LRlL~N~~l~pe~V~~ikddieyYve 214 (873)
=+||..|.+.|..|.++=..+...++
T Consensus 259 ~~Li~dgri~p~rIeevv~~~~~~~~ 284 (508)
T PRK12705 259 EKLLADGRIHPARIEEYVQKANEEFK 284 (508)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 46777777777777776655555543
No 478
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.99 E-value=5.9e+02 Score=28.57 Aligned_cols=87 Identities=20% Similarity=0.257 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchh-hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhh
Q 002856 124 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPR-LTHLETSITRHKAHIMKLELILRLLDNDELS-PEQ 201 (873)
Q Consensus 124 ~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r-~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~-pe~ 201 (873)
..+...++++||..-|++++.+++..|.++.....+.+=-..+. ...+...+...+-.+..+|.=|..|..---+ -=+
T Consensus 164 ~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 164 NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q ss_pred hhhhhhHHH
Q 002856 202 VNDVKDLLE 210 (873)
Q Consensus 202 V~~ikddie 210 (873)
|..+++.|+
T Consensus 244 v~~l~~~i~ 252 (362)
T TIGR01010 244 VPSLQARIK 252 (362)
T ss_pred hHHHHHHHH
No 479
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=22.75 E-value=1.5e+03 Score=29.21 Aligned_cols=164 Identities=16% Similarity=0.239 Sum_probs=86.0
Q ss_pred HHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccc---cccccccchhhHHHHHHHHHHHHHHH
Q 002856 19 QEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS---EIKDKKVSASYEQALVDARKLIEREM 95 (873)
Q Consensus 19 ~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~---eIKDK~~~~~~~~~L~e~Rk~IE~~M 95 (873)
..+++..-+|++-+........-.++..+++ .+.-|-.+.+.|..|+... .|+|--...-|-..|.+.|.+++..=
T Consensus 366 ~~~l~~~~~i~~~l~~~~~~~~l~~~~~~i~-~~~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~ 444 (843)
T COG0249 366 RDSLEKIPEIFKLLSSLKSESDLLLLLEDIE-SLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAK 444 (843)
T ss_pred HHHHHHHHHHHHHHhccccchhhhHHhhhhh-ccccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHH
Confidence 4667777777777777665554444444433 3332335666677776655 33321133457778999999888666
Q ss_pred HHHHHHHhhhc---------ccccccccc-C----CCCCCCchH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002856 96 ERFKICEKETK---------TKAFSKEGL-G----QQPKTDPKE----KAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 96 ErFK~vEKe~K---------tKafSkEGL-~----~~~k~Dp~e----kek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls 157 (873)
+-...+|.+-+ .+--..-|. . ......|.. +....+..|...-+.+++..+...+..+-.+
T Consensus 445 ~~i~~le~~~r~~~gi~slki~~n~v~Gy~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~l- 523 (843)
T COG0249 445 EWIAKLELEERERTGIKSLKIKYNKVYGYYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPELKELEEKLLDAEEKILAL- 523 (843)
T ss_pred HHHHHHHHHHHHhcCCchhhhhhhccceeEEEechhccccCchHHHHHHHHhcceEecCHHHHHHHHHHHHHHHHHHHH-
Confidence 66666666522 222222331 0 111223321 1112233344444444444444333333222
Q ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 158 VKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (873)
Q Consensus 158 ~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~ 193 (873)
..+-+....+++.-|+..|..+-+.|.
T Consensus 524 ---------E~~l~~~~~~~i~~~~~~l~~~a~aLa 550 (843)
T COG0249 524 ---------EYELFDELREKILAHINELQALAKALA 550 (843)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112355667888888888888877653
No 480
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=22.71 E-value=3e+02 Score=28.04 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 002856 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF 98 (873)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErF 98 (873)
-+|+|||.|+..+.+++. .+...|.-+...|+.+
T Consensus 58 ~~k~E~krL~~rkk~~e~------------------~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 58 AIKAEIKRLQERKKSIEN------------------RIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHc
Confidence 478888888887766543 6666777788899886
No 481
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=22.71 E-value=62 Score=29.62 Aligned_cols=16 Identities=50% Similarity=0.665 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhh
Q 002856 141 ELESQIDSFEAELEGL 156 (873)
Q Consensus 141 eL~~QiE~~EaE~E~L 156 (873)
+|..+++.++.+++.+
T Consensus 2 eL~~~~~~l~~~~~~~ 17 (93)
T PF00816_consen 2 ELEAQIKELEKEIEER 17 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6777777777776554
No 482
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=22.33 E-value=6.8e+02 Score=30.36 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cccCCC
Q 002856 85 VDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT-VKKGKT 163 (873)
Q Consensus 85 ~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls-~KK~K~ 163 (873)
...-..+-..+-+|+++|.-...-+| +|+..+...+-..-|.+++.+=..+--.+|..+..|. ..+|--
T Consensus 376 ~~~a~~lr~~la~y~e~e~~~~~G~~----------ld~~~~~~i~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~g~~ 445 (502)
T PRK13343 376 RKESGRLRLDYAQFLELEAFTRFGGL----------LDAGTQKQITRGRRLRELLKQPRFSPLSVEEQIALLYALNEGLL 445 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh----------cCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCc
Confidence 33344555567788888865444433 4665554444333333332221111122333333332 233322
Q ss_pred CchhhHHHHHHHHHHHHHHH-HHHHHHHhhh-CCCCChhhhhhhhhHHHHHHHh
Q 002856 164 RPPRLTHLETSITRHKAHIM-KLELILRLLD-NDELSPEQVNDVKDLLEDYVER 215 (873)
Q Consensus 164 ~~~r~~~le~~ierhk~Hi~-kLE~lLRlL~-N~~l~pe~V~~ikddieyYve~ 215 (873)
+.-.++++..+......|+. +...++..|+ .+.|+.+....|++-|+.|++.
T Consensus 446 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~ 499 (502)
T PRK13343 446 DAVPLANIQAFEERLLEKLDARFAALSLALESPRELDEAWLAALEEILREAGER 499 (502)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 22233444444444333432 2334445554 4558888888899999998864
No 483
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.30 E-value=6.7e+02 Score=29.90 Aligned_cols=19 Identities=32% Similarity=0.225 Sum_probs=8.5
Q ss_pred cccccccchhhHHHHHHHH
Q 002856 70 EIKDKKVSASYEQALVDAR 88 (873)
Q Consensus 70 eIKDK~~~~~~~~~L~e~R 88 (873)
|+.+..-+++|...|+..|
T Consensus 141 da~~~~R~ai~~~~l~~~~ 159 (420)
T COG4942 141 DAQRSVRLAIYYGALNPAR 159 (420)
T ss_pred hhhHHHHHHHHHHHhhHHH
Confidence 4444443444544444443
No 484
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=22.17 E-value=4.6e+02 Score=24.26 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (873)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~ 193 (873)
|+.+=|++.|..++.=++.++.=++.+. ...=...++..+..|+-|+..|...+..+-
T Consensus 1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~------~~~lk~~f~~~~~~~~~~~~~L~~~i~~~G 58 (111)
T PF09537_consen 1 ETIEALNDLLKGLHDGIEGYEKAAEKAE------DPELKSLFQEFAQERQQHAEELQAEIQELG 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556678888888888888877766652 222335677888999999999999998876
No 485
>COG2924 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.15 E-value=65 Score=30.37 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccc
Q 002856 85 VDARKLIEREMERFKICEKETKTKAF 110 (873)
Q Consensus 85 ~e~Rk~IE~~MErFK~vEKe~KtKaf 110 (873)
.|+||++|++|+.|=-=++.-+.-.|
T Consensus 60 ~e~Rk~Leqem~~flf~~~~~~~~GY 85 (90)
T COG2924 60 AEHRKLLEQEMVNFLFEGKAVHIEGY 85 (90)
T ss_pred HHHHHHHHHHHHHHhhcCcccccccc
Confidence 58999999999999655555555444
No 486
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=22.07 E-value=7e+02 Score=23.81 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHH-hHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 002856 43 KFEADLKKEIKKLQR-YRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKIC 101 (873)
Q Consensus 43 KlE~DLKKEIKKLQR-~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~v 101 (873)
+++.-.+..+.+++. +=+.|+.|+. .+||+-+ -..+.+...|.-++..+++++.+
T Consensus 65 ~l~~~~~~~~~~~~~~v~~pL~~~~~-~~~~~~~---~~~k~~~~~~~~yd~~~~k~~~~ 120 (194)
T cd07307 65 ELEEFRDQLEQKLENKVIEPLKEYLK-KDLKEIK---KRRKKLDKARLDYDAAREKLKKL 120 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444432 4455666664 2333211 01124444444455555554333
No 487
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=22.00 E-value=4.4e+02 Score=28.72 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc--ccC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002856 133 DWLNNLVSELESQIDSFEAELEGLTV--KKG--KTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (873)
Q Consensus 133 ~wL~~~IdeL~~QiE~~EaE~E~Ls~--KK~--K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N 194 (873)
..|..+++....-++.+|.+++.+.. .+. ++.-.++-.++..+-+.+..+.-+..+++.|..
T Consensus 138 ~il~~ivd~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~ 203 (318)
T TIGR00383 138 DIFDAIIDSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLR 203 (318)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444555445555555555555522 111 122357777888777777666666666665544
No 488
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=21.99 E-value=8.1e+02 Score=29.67 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHhhh-hcccCCC
Q 002856 89 KLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQ----IDSFEAELEGL-TVKKGKT 163 (873)
Q Consensus 89 k~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~Q----iE~~EaE~E~L-s~KK~K~ 163 (873)
..+-..|-+|+++|.-.+. .. .+||..++..+-.. .|.++=+| --.++..+-.| ...+|.-
T Consensus 359 ~~lr~~la~y~e~e~~~~~----~~------~~d~~~~~~i~~~~----~i~~~L~Q~~~~~~~~~e~~~~l~a~~~g~l 424 (485)
T CHL00059 359 GKLKLELAQFAELEAFAQF----AS------DLDKATQNQLARGQ----RLRELLKQSQSAPLTVEEQVATIYTGTNGYL 424 (485)
T ss_pred HHHHHHHHHHHHHHHHHHh----hc------CCCHHHHHHHHhHH----HHHHHhcCCCCCCCCHHHHHHHHHHhccCCc
Confidence 3445567788888887766 22 34665544433222 22222233 12223332222 2345554
Q ss_pred CchhhHHHHHHHHHHHHHHH-HHHHHHHhhh-CCCCChhhhhhhhhHHHHHHHh
Q 002856 164 RPPRLTHLETSITRHKAHIM-KLELILRLLD-NDELSPEQVNDVKDLLEDYVER 215 (873)
Q Consensus 164 ~~~r~~~le~~ierhk~Hi~-kLE~lLRlL~-N~~l~pe~V~~ikddieyYve~ 215 (873)
+.-.++++..++...-.|+. +...+++.|+ .+.|+.+..+.|++.|+.|++.
T Consensus 425 ~~~~~~~v~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 478 (485)
T CHL00059 425 DSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQLEL 478 (485)
T ss_pred CccCHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 43334556666655555553 3444555554 5678888778899999999875
No 489
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=21.98 E-value=3.4e+02 Score=29.84 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=47.8
Q ss_pred CccccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCC-----CchhHHHHHHHHH--HHHHHHHHhHHHHHHhhcccccc
Q 002856 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD-----NANQKEKFEADLK--KEIKKLQRYRDQIKTWIQSSEIK 72 (873)
Q Consensus 1 Maa~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~-----n~nQKEKlE~DLK--KEIKKLQR~RDQIKtW~~s~eIK 72 (873)
|...++||.++..++-.|..|...-+.+=+.+-.+. +...|..++.=|. +.||-++.....|+.-++..|.-
T Consensus 66 ~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~ 144 (291)
T PF10475_consen 66 MSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYP 144 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 445577888888888888888877777666654321 2333444443332 46788888888888888887654
No 490
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=21.96 E-value=1.1e+03 Score=26.11 Aligned_cols=147 Identities=17% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH--------------hHHHHHHhhccccccccccc
Q 002856 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR--------------YRDQIKTWIQSSEIKDKKVS 77 (873)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR--------------~RDQIKtW~~s~eIKDK~~~ 77 (873)
+++.|+|+.|...-++|-+=+. .|-++|.+--|.+.||-| ++.-...-++.-|-=.+.
T Consensus 8 ~~~~kr~~~g~~~~~dl~~f~k------ERA~IE~~Yak~L~~Lakk~~~~~~~~~~~Gtl~~aw~~i~~etE~ia~~-- 79 (258)
T cd07680 8 KRTVKRIDDGHRLCNDLMNCVQ------ERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSEL-- 79 (258)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHH--
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccc----cccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002856 78 ASYEQALVDARKLIEREMERFKICEKETKTK----AFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 153 (873)
Q Consensus 78 ~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtK----afSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~ 153 (873)
-..=.-.||++.+|.||..-|+...| +| |++.++.+=+...-..+...+..++.
T Consensus 80 -----H~~la~~L~~e~~e~~r~~qk~~~~k~~~~~~---------------ke~K~~e~~~~KaQK~~~k~~k~v~~-- 137 (258)
T cd07680 80 -----HQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGF---------------KETKEAEDGFRKAQKPWAKKMKELEA-- 137 (258)
T ss_pred -----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh---------------HHHHHHHHHHHHHHhHHHHHHHHHHH--
Q ss_pred hhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh------CCCCChhhhhhhhhHHH
Q 002856 154 EGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD------NDELSPEQVNDVKDLLE 210 (873)
Q Consensus 154 E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~------N~~l~pe~V~~ikddie 210 (873)
.|-+||..+.|.=.-+.. .-.+.+++|+.+++-++
T Consensus 138 ----------------------sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~ 178 (258)
T cd07680 138 ----------------------AKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVD 178 (258)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHH
No 491
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=21.89 E-value=6.8e+02 Score=25.81 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002856 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls 157 (873)
.+-..+.+|...-..+|..+++.++.+++.+.
T Consensus 102 ~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~ 133 (275)
T PF03105_consen 102 EELEKVNDFYKEKEKELRERLEELQKQLEELR 133 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777777778888887777773
No 492
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.75 E-value=3.8e+02 Score=25.15 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=25.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002856 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 126 kek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls 157 (873)
+...|++.-|+-=|++|+.+...+..|++.+.
T Consensus 14 qqAvdtI~LLqmEieELKekn~~L~~e~~~~~ 45 (79)
T PRK15422 14 QQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888999998888888887763
No 493
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.75 E-value=1.2e+02 Score=27.70 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhCCCCChhh-hhhhhhHHHHHHHhC
Q 002856 181 HIMKLELILRLLDNDELSPEQ-VNDVKDLLEDYVERN 216 (873)
Q Consensus 181 Hi~kLE~lLRlL~N~~l~pe~-V~~ikddieyYve~n 216 (873)
-+.+||.|++.|++|.|.-++ +..+++-++.+-.++
T Consensus 11 ~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c~ 47 (75)
T PRK14064 11 AIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQ 47 (75)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999544 444666655554433
No 494
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=21.61 E-value=1.8e+02 Score=29.33 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCC--hhhhhhhhhHHHHHHHh
Q 002856 171 LETSITRHKAHIMKLELILRLLDNDELS--PEQVNDVKDLLEDYVER 215 (873)
Q Consensus 171 le~~ierhk~Hi~kLE~lLRlL~N~~l~--pe~V~~ikddieyYve~ 215 (873)
|+.+++--+-||.+||.|++.|.-.-=. .+-+..|-.+.+..++.
T Consensus 40 l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~e~~~~~~~ 86 (159)
T PF05974_consen 40 LEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVAEAQELIEE 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHHHHHHHHhc
Confidence 4444444488999999999999644321 24566677777777764
No 495
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=21.60 E-value=9.2e+02 Score=30.60 Aligned_cols=66 Identities=27% Similarity=0.449 Sum_probs=46.4
Q ss_pred HHHHHHHHHH-----HHHHHHHhHHHHHHhhccc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 002856 41 KEKFEADLKK-----EIKKLQRYRDQIKTWIQSS-EIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKE 113 (873)
Q Consensus 41 KEKlE~DLKK-----EIKKLQR~RDQIKtW~~s~-eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkE 113 (873)
|+||.+.+.+ |--||.++-+-+-.|+--. |.-.| +.|..+|.|..++.- -.||++.|.. -|+|-+.
T Consensus 586 R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k---~~Y~~kl~elk~~g~--~~r~~e~~~r--~k~~d~~ 657 (727)
T KOG0103|consen 586 RDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTK---AVYVAKLEELKKLGD--KKRFDENEER--PKAFDEL 657 (727)
T ss_pred HHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccch---HHHHHHHHHHHhhhh--hhhhhhhhhh--hHHHHHH
Confidence 6777776666 7778899999999999654 22222 468889999988876 6788877654 3444443
No 496
>PF08376 NIT: Nitrate and nitrite sensing; InterPro: IPR013587 The nitrate and nitrite-sensing (NIT) domain is a (~250 aa) sensor domain found in various receptor components of signal transduction pathways from different bacterial lineages []. The NIT domain is predicted to be all alpha-helical in structure []. Proteins containing a NIT domain belong to one of four known classes of prokaryotic signal transduction proteins: intracellular transcription anti-termination regulators, sensor histidine kinases, methyl-accepting chemotaxis proteins, diguanylate cyclases/phosphodiesterases. NIT-containing receptors regulate cellular functions such as gene expression (transcription anti-terminators and histidine kinases), cell motility (chemotaxis receptors), and enzyme activity (diguanylate cyclases/phosphodiesterases), in response to changes in nitrate and/or nitrite concentrations. The NIT domain is found as both an extracellular and an intracellular sensor. The NIT domain can be found in combination with other signalling domains, such as ANTAR, HAMP (IPR003660 from INTERPRO), MCP, Hemerythrins (IPR002063 from INTERPRO), CHASE (IPR006189 from INTERPRO), GGDEF (IPR000160 from INTERPRO), PAS (IPR000014 from INTERPRO), EAL (IPR001633 from INTERPRO), HK (IPR005467 from INTERPRO), GAF, REC and Hpt (IPR008207 from INTERPRO).; PDB: 4AKK_A.
Probab=21.51 E-value=8.8e+02 Score=24.75 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=37.4
Q ss_pred HHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002856 52 IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEK 103 (873)
Q Consensus 52 IKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEK 103 (873)
|.-||+-|..=-.|++++.-..+. .|...|+..-+.+.+|...=.
T Consensus 5 v~~LQ~ERg~s~~~l~s~~~~~~~-------~l~~qr~~tD~a~~~~~~~~~ 49 (247)
T PF08376_consen 5 VHALQQERGLSAAYLASPGKQFRA-------ELKAQRAATDRAIAELRRALA 49 (247)
T ss_dssp HHHHHHHHHHHHHHHHTTSSS-HH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCcchHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999998733344 999999999999999977655
No 497
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.50 E-value=2.7e+02 Score=31.25 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhcc-ccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002856 41 KEKFEADLKKEIKKLQRYRDQIKTWIQS-SEIKDKKVSASYEQALVDARKLIEREMERFK 99 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s-~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK 99 (873)
-|.++.+||+.=|+|+-+|++|..|-.- .+++.|+ ..|...=..|..++++|+
T Consensus 209 Le~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~------~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 209 LEELEEELKQKEKEVKEIKERITEMKGRLGELEMES------TRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhc
Confidence 3456778999999999999999644332 1233332 133334444555666664
No 498
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=21.46 E-value=1e+03 Score=25.97 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002856 80 YEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK 159 (873)
Q Consensus 80 ~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~K 159 (873)
+..-|.+.|+-+...|.++|.+||+ .++.+.....|=.....-|..-.|.|=.+.
T Consensus 36 ~~~~l~~ar~~~A~~~a~~k~~e~~-------------------~~~~~~~~~k~e~~A~~Al~~g~E~LAr~a------ 90 (225)
T COG1842 36 MESELAKARQALAQAIARQKQLERK-------------------LEEAQARAEKLEEKAELALQAGNEDLAREA------ 90 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHH------
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 160 KGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (873)
Q Consensus 160 K~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~ 193 (873)
-.|+..|+..++.|+-|+..++..+.-|.
T Consensus 91 -----l~~~~~le~~~~~~~~~~~~~~~~~~~l~ 119 (225)
T COG1842 91 -----LEEKQSLEDLAKALEAELQQAEEQVEKLK 119 (225)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=21.26 E-value=2.6e+02 Score=33.78 Aligned_cols=91 Identities=22% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC--C
Q 002856 87 ARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKT--R 164 (873)
Q Consensus 87 ~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~--~ 164 (873)
+||.|-.-|..+-+.|. ++|- |+ .+|....+-++.+|..|+++.-.-..+|+....-+--. +
T Consensus 262 hr~rmd~VmkEW~~ae~--------------qaKn-PK-AekqalnqhFQ~~v~sLEee~a~erqqlvetH~~RV~AmlN 325 (615)
T KOG3540|consen 262 HRKRMDKVMKEWEEAET--------------QAKN-PK-AEKQALNQHFQKTVSSLEEEAARERQQLVETHEARVEAMLN 325 (615)
T ss_pred HHHHHHHHHHHHHHHHh--------------cccC-ch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 165 PPRLTHLETSITRHKAHIMKLELILRLLD 193 (873)
Q Consensus 165 ~~r~~~le~~ierhk~Hi~kLE~lLRlL~ 193 (873)
..|-..|+..+.-..-|.-+=+.||-+|.
T Consensus 326 drrR~Ale~ylaALqa~pprp~~Vl~aLk 354 (615)
T KOG3540|consen 326 DRRRDALENYLAALQADPPRPHRVLQALK 354 (615)
T ss_pred hHHHHHHHHHHHHHhcCCCChHHHHHHHH
No 500
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=21.13 E-value=2.9e+02 Score=29.60 Aligned_cols=129 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred hhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHH-HHHHHHHHHH
Q 002856 65 WIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRD-WLNNLVSELE 143 (873)
Q Consensus 65 W~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~-wL~~~IdeL~ 143 (873)
|.=.++ ++.+.+-..+.-|+..-..-+-.+|+.=|-|..-. ..+..|-+. =|..-...|.
T Consensus 69 wsfps~------------a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~-------~~e~tEer~~el~kklnslk 129 (203)
T KOG3433|consen 69 WSFPSE------------AICDRKSVLQELESQLATGSQKKATLGESIENRKA-------GREETEERTDELTKKLNSLK 129 (203)
T ss_pred cccchH------------HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHh-------hhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CChhhhhh---hhhHHHHH
Q 002856 144 SQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE-LSPEQVND---VKDLLEDY 212 (873)
Q Consensus 144 ~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~-l~pe~V~~---ikddieyY 212 (873)
.+++.+..|+.++..-+.-.-...+..-+.+.+--+.-+.+++.|...+...- +++++|+. |=||++|+
T Consensus 130 k~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~eaanrwtDnI~il~dy~~rkf~~e~nqi~~~fgIPed~d~i 202 (203)
T KOG3433|consen 130 KILESLRWELAKIQETDPQVFEKKVHLEKTMAEAANRWTDNIFILIDYLYRKFGLEPNQIRKEFGIPEDFDYI 202 (203)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhcCCCHHHHhHhcCCCcccccc
Done!