Query 002856
Match_columns 873
No_of_seqs 271 out of 455
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 04:16:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 92.7 1.6 5.6E-05 48.9 15.3 27 137-163 558-584 (597)
2 3m3w_A Pacsin3, protein kinase 90.2 4.4 0.00015 42.9 14.6 93 127-219 198-291 (320)
3 1i84_S Smooth muscle myosin he 90.2 0.48 1.6E-05 58.7 8.2 27 39-65 892-918 (1184)
4 3oja_B Anopheles plasmodium-re 88.0 1.9 6.4E-05 48.4 10.3 16 83-98 478-493 (597)
5 1i84_S Smooth muscle myosin he 86.8 0.45 1.5E-05 58.9 4.9 6 7-12 862-867 (1184)
6 2v0o_A FCHO2, FCH domain only 85.0 24 0.00081 35.6 15.7 77 135-219 179-263 (276)
7 2efl_A Formin-binding protein 81.9 9.6 0.00033 38.9 11.4 17 204-220 265-281 (305)
8 3ghg_A Fibrinogen alpha chain; 81.5 11 0.00036 43.6 12.3 52 130-189 103-154 (562)
9 3na7_A HP0958; flagellar bioge 81.4 20 0.0007 36.9 13.7 26 39-64 60-85 (256)
10 3aco_A Pacsin2, protein kinase 81.1 60 0.002 34.4 20.3 22 11-32 31-52 (350)
11 1ez3_A Syntaxin-1A; three heli 81.1 9.9 0.00034 34.6 10.1 97 9-106 15-119 (127)
12 2zqm_A Prefoldin beta subunit 78.5 22 0.00076 31.9 11.4 84 47-155 7-95 (117)
13 3abh_A Pacsin2, protein kinase 78.4 46 0.0016 34.4 15.4 26 131-156 211-236 (312)
14 2dfs_A Myosin-5A; myosin-V, in 78.1 5.5 0.00019 49.3 9.5 14 44-57 954-967 (1080)
15 1s94_A S-syntaxin; three helix 76.1 19 0.00065 35.0 11.0 99 9-108 46-152 (180)
16 3haj_A Human pacsin2 F-BAR; pa 76.0 10 0.00036 42.3 10.3 58 5-62 139-208 (486)
17 3mq9_A Bone marrow stromal ant 75.8 11 0.00039 41.2 10.4 86 82-191 373-468 (471)
18 1fxk_A Prefoldin; archaeal pro 75.1 23 0.00079 31.3 10.4 83 48-155 3-90 (107)
19 1t3j_A Mitofusin 1; coiled coi 74.8 3.6 0.00012 37.8 5.1 62 6-99 29-91 (96)
20 2gyq_A YCFI, putative structur 70.2 12 0.0004 37.2 7.9 82 129-216 15-98 (173)
21 3fx7_A Putative uncharacterize 69.8 13 0.00043 34.1 7.3 58 4-62 11-68 (94)
22 4akv_A Sorting nexin-33; trans 67.9 1.1E+02 0.0036 33.6 15.6 61 127-194 324-385 (386)
23 3va9_A Sensor histidine kinase 66.6 19 0.00064 34.3 8.4 44 137-181 120-163 (164)
24 2efk_A CDC42-interacting prote 66.6 1.2E+02 0.004 30.9 17.3 16 205-220 259-274 (301)
25 1fxk_C Protein (prefoldin); ar 65.4 24 0.00081 32.7 8.6 32 125-156 83-114 (133)
26 1fio_A SSO1 protein; four heli 63.8 59 0.002 31.5 11.5 93 7-106 10-108 (196)
27 1wmi_B RELB, hypothetical prot 62.3 2.5 8.6E-05 35.9 1.2 42 167-208 5-47 (67)
28 1u2m_A Histone-like protein HL 60.2 4.7 0.00016 37.7 2.8 91 5-111 26-116 (143)
29 3nr7_A DNA-binding protein H-N 60.0 28 0.00095 31.2 7.5 56 131-204 25-80 (86)
30 1deq_A Fibrinogen (alpha chain 59.8 1.2E+02 0.0042 33.8 14.0 16 42-57 59-74 (390)
31 3f6n_A Virion-associated prote 58.6 14 0.00048 35.3 5.6 54 1-54 1-59 (129)
32 2gs4_A Protein YCIF; stress pr 58.4 21 0.00072 35.1 7.1 79 130-214 9-90 (166)
33 1deq_A Fibrinogen (alpha chain 57.2 1.7E+02 0.0057 32.8 14.5 26 131-156 135-160 (390)
34 2x3v_A Syndapin I, protein kin 57.0 89 0.003 32.6 12.1 15 204-218 276-290 (337)
35 2p22_C Protein SRN2; endosome, 56.1 1.1E+02 0.0037 30.9 12.0 25 81-105 85-109 (192)
36 1m1j_B Fibrinogen beta chain; 55.6 1.3E+02 0.0045 34.3 13.8 38 18-57 98-135 (464)
37 3uun_A Dystrophin; triple heli 55.3 83 0.0028 27.1 9.9 44 169-212 46-90 (119)
38 2dfs_A Myosin-5A; myosin-V, in 54.9 29 0.00098 43.1 9.1 19 48-66 1028-1046(1080)
39 3g9g_A Suppressor of yeast pro 53.7 1.2E+02 0.0042 32.3 12.6 43 166-216 217-267 (287)
40 3haj_A Human pacsin2 F-BAR; pa 52.9 1.5E+02 0.0052 33.0 13.8 15 204-218 278-292 (486)
41 3i2w_A Syndapin, LD46328P; EFC 51.0 75 0.0026 32.5 10.2 32 5-36 124-155 (290)
42 2xhe_B Syntaxin1; exocytosis, 51.0 75 0.0026 32.9 10.3 60 6-66 48-112 (279)
43 3oja_A Leucine-rich immune mol 50.6 2.7E+02 0.0092 30.5 15.2 17 139-155 444-460 (487)
44 3vkg_A Dynein heavy chain, cyt 50.4 1.3E+02 0.0046 41.7 14.8 21 9-29 1913-1933(3245)
45 3fb2_A Spectrin alpha chain, b 49.6 41 0.0014 32.8 7.7 123 10-155 89-216 (218)
46 3vkg_A Dynein heavy chain, cyt 49.1 3.4E+02 0.012 38.0 18.2 20 137-156 2035-2054(3245)
47 4dyl_A Tyrosine-protein kinase 49.0 83 0.0029 34.4 10.7 16 205-220 258-273 (406)
48 3uul_A Utrophin; spectrin repe 48.8 1.3E+02 0.0043 26.1 10.0 44 169-212 46-90 (118)
49 2js5_A Uncharacterized protein 48.6 12 0.00041 32.8 3.1 19 46-64 6-24 (71)
50 1f5n_A Interferon-induced guan 47.9 99 0.0034 36.0 11.6 38 53-98 438-475 (592)
51 3ghg_C Fibrinogen gamma chain; 47.6 36 0.0012 38.2 7.6 85 128-218 22-137 (411)
52 3i2w_A Syndapin, LD46328P; EFC 46.9 2.5E+02 0.0085 28.6 13.9 28 129-156 187-214 (290)
53 1dn1_B Syntaxin 1A, syntaxin b 46.6 85 0.0029 32.6 9.9 97 9-106 38-142 (267)
54 3nvo_A Zinc transport protein 46.0 1E+02 0.0035 30.9 10.2 62 131-196 156-217 (264)
55 1xaw_A Occludin; coiled-coil, 45.1 67 0.0023 31.3 8.1 32 120-151 106-137 (140)
56 1bf5_A Signal transducer and a 44.8 4.4E+02 0.015 30.9 16.1 51 5-56 15-65 (575)
57 1f5n_A Interferon-induced guan 43.8 2.6E+02 0.0088 32.5 14.2 17 199-215 566-582 (592)
58 3m91_B Prokaryotic ubiquitin-l 43.6 14 0.00046 29.7 2.5 23 199-221 13-35 (44)
59 2xs1_A Programmed cell death 6 43.2 2.5E+02 0.0086 33.0 14.2 28 6-33 493-520 (704)
60 2ocy_A RAB guanine nucleotide 43.1 24 0.00084 34.7 4.8 27 78-104 16-42 (154)
61 2ke4_A CDC42-interacting prote 43.0 60 0.002 29.7 7.0 64 5-68 18-87 (98)
62 2zdi_C Prefoldin subunit alpha 42.2 47 0.0016 31.6 6.6 32 125-156 93-124 (151)
63 2lw9_A Unconventionnal myosin- 40.6 15 0.00051 30.1 2.3 22 47-68 10-31 (51)
64 3ghg_A Fibrinogen alpha chain; 40.5 29 0.001 40.1 5.5 61 167-233 118-181 (562)
65 3tnu_B Keratin, type II cytosk 40.3 33 0.0011 32.1 5.1 20 138-157 37-56 (129)
66 3f31_A Spectrin alpha chain, b 39.7 51 0.0017 30.8 6.3 126 17-154 16-141 (149)
67 2x3v_A Syndapin I, protein kin 39.4 1.6E+02 0.0056 30.7 10.8 12 203-214 279-290 (337)
68 2a01_A Apolipoprotein A-I; fou 39.3 2.6E+02 0.0089 28.6 12.0 54 41-99 61-116 (243)
69 2c0g_A ERP29 homolog, windbeut 39.2 36 0.0012 35.1 5.7 49 42-109 194-243 (248)
70 3dyt_A Sorting nexin-9; 3-heli 38.7 4E+02 0.014 28.6 17.3 125 47-194 230-365 (366)
71 1sjj_A Actinin; 3-helix bundle 38.4 1.8E+02 0.0062 34.2 12.0 43 23-69 338-389 (863)
72 3csx_A Putative uncharacterize 38.4 49 0.0017 29.6 5.5 20 47-66 19-38 (81)
73 3lbx_B Beta-I spectrin, spectr 37.9 1.3E+02 0.0043 28.8 8.9 51 10-70 80-130 (185)
74 2l7b_A Apolipoprotein E, APO-E 37.4 2.5E+02 0.0087 30.1 12.0 184 19-218 35-235 (307)
75 2efk_A CDC42-interacting prote 37.2 3.4E+02 0.012 27.4 15.7 28 24-51 66-95 (301)
76 2v71_A Nuclear distribution pr 36.6 76 0.0026 32.2 7.3 85 132-216 51-146 (189)
77 1m1j_C Fibrinogen gamma chain; 36.4 2.3E+02 0.0079 31.7 11.8 27 168-194 107-133 (409)
78 3htk_A Structural maintenance 36.2 1E+02 0.0035 24.8 6.8 57 135-212 3-59 (60)
79 2q13_A DCC-interacting protein 36.0 4.3E+02 0.015 28.2 16.8 16 506-521 359-374 (385)
80 3tnu_A Keratin, type I cytoske 36.0 26 0.00088 33.0 3.6 20 138-157 39-58 (131)
81 2hn1_A CORA, magnesium and cob 36.0 1.8E+02 0.006 29.4 10.1 60 132-195 182-241 (266)
82 1ezj_A Nucleocapsid phosphopro 35.9 29 0.001 32.2 3.8 35 5-44 66-100 (115)
83 2gd5_A Charged multivesicular 35.6 67 0.0023 31.5 6.6 96 120-216 5-133 (179)
84 1i6z_A BAG-family molecular ch 35.1 1.8E+02 0.0063 28.2 9.3 79 119-199 10-89 (135)
85 3kbt_A Beta-I spectrin, spectr 35.0 3.7E+02 0.013 27.2 15.0 140 22-183 85-225 (326)
86 3mq9_A Bone marrow stromal ant 34.6 1.6E+02 0.0055 32.1 10.2 12 96-107 411-422 (471)
87 3hhm_B NISH2 P85alpha; PI3KCA, 34.5 30 0.001 38.1 4.3 37 39-75 219-272 (373)
88 2d4u_A Methyl-accepting chemot 34.5 2.1E+02 0.0071 26.0 9.5 61 10-70 66-127 (176)
89 2oez_A UPF0289 protein VP2528; 34.0 25 0.00087 36.9 3.5 122 46-196 58-180 (247)
90 1bg1_A Protein (transcription 33.9 6.4E+02 0.022 29.6 15.3 39 174-213 147-187 (596)
91 1go4_E MAD1 (mitotic arrest de 33.9 2.9E+02 0.0098 25.5 10.0 72 46-156 15-94 (100)
92 4dyl_A Tyrosine-protein kinase 33.6 86 0.0029 34.3 7.8 55 5-59 122-184 (406)
93 1y1u_A Signal transducer and a 33.4 6.5E+02 0.022 29.5 18.3 49 6-54 26-83 (585)
94 2efl_A Formin-binding protein 33.4 2.3E+02 0.0079 28.6 10.5 15 203-217 268-282 (305)
95 1gmj_A ATPase inhibitor; coile 32.6 35 0.0012 30.7 3.6 26 40-65 45-70 (84)
96 1deb_A APC protein, adenomatou 32.4 80 0.0027 26.1 5.4 34 139-187 5-38 (54)
97 3hhm_B NISH2 P85alpha; PI3KCA, 32.4 2.9E+02 0.01 30.3 11.7 57 123-187 197-254 (373)
98 3aco_A Pacsin2, protein kinase 32.4 81 0.0028 33.3 7.2 13 206-218 287-299 (350)
99 3trt_A Vimentin; cytoskeleton, 32.4 2.1E+02 0.0072 24.1 8.4 25 128-152 26-50 (77)
100 3d5a_X RF1, peptide chain rele 32.0 3.4E+02 0.012 29.9 12.0 27 131-157 70-96 (354)
101 2lw1_A ABC transporter ATP-bin 31.6 1.3E+02 0.0043 26.5 7.1 55 48-102 27-83 (89)
102 2lig_A Aspartate receptor; che 31.5 2.4E+02 0.0081 24.6 9.0 17 16-32 67-83 (164)
103 4ad8_A DNA repair protein RECN 31.4 75 0.0025 35.5 7.0 42 23-66 179-220 (517)
104 1tqg_A Chemotaxis protein CHEA 31.1 2.6E+02 0.009 24.3 10.2 78 131-210 3-94 (105)
105 1gmj_A ATPase inhibitor; coile 30.7 2E+02 0.0068 25.9 8.1 20 168-187 60-79 (84)
106 3gp4_A Transcriptional regulat 30.7 83 0.0028 29.7 6.2 21 46-66 91-111 (142)
107 2c5k_T Syntaxin TLG1, T-snare 30.4 1.5E+02 0.005 26.8 7.4 52 6-57 36-89 (95)
108 2v4h_A NF-kappa-B essential mo 29.9 3.5E+02 0.012 25.5 9.9 24 132-155 85-108 (110)
109 2nt8_A Cobalamin adenosyltrans 29.7 80 0.0028 32.7 6.3 113 93-216 19-141 (223)
110 3gpv_A Transcriptional regulat 29.5 89 0.003 29.6 6.2 20 46-65 105-124 (148)
111 3rrk_A V-type ATPase 116 kDa s 29.5 2.2E+02 0.0076 30.0 10.0 101 86-214 60-173 (357)
112 3l4q_C Phosphatidylinositol 3- 29.3 4.4E+02 0.015 26.3 15.2 73 84-156 47-122 (170)
113 1bgc_A Granulocyte colony-stim 29.1 1.3E+02 0.0044 30.3 7.4 51 12-64 72-123 (174)
114 2lch_A Protein OR38; structura 29.1 3E+02 0.01 24.3 10.7 81 132-214 5-102 (113)
115 2ke4_A CDC42-interacting prote 29.0 1.2E+02 0.0042 27.6 6.7 60 135-194 20-90 (98)
116 3szr_A Interferon-induced GTP- 28.3 1.6E+02 0.0054 33.9 9.2 62 42-106 398-478 (608)
117 1q06_A Transcriptional regulat 27.9 69 0.0024 29.9 5.1 25 45-69 88-112 (135)
118 1q08_A Zn(II)-responsive regul 27.5 97 0.0033 26.7 5.7 24 46-69 49-72 (99)
119 4egw_A Magnesium transport pro 27.5 5E+02 0.017 26.4 12.1 28 129-156 233-260 (280)
120 2q12_A DIP13 alpha, DCC-intera 27.4 4.9E+02 0.017 26.2 18.4 71 12-104 83-153 (265)
121 3ck6_A Putative membrane trans 27.3 2.3E+02 0.008 28.1 9.2 59 135-195 142-200 (252)
122 4f61_I Stathmin-like domain R4 26.9 1.7E+02 0.0057 30.9 8.0 110 83-214 43-158 (240)
123 2a1d_D Staphylocoagulase; prot 26.7 5.9E+02 0.02 27.8 12.4 56 137-192 121-196 (329)
124 2w6b_A RHO guanine nucleotide 26.6 1.9E+02 0.0064 24.3 6.7 43 135-192 8-50 (56)
125 1u00_A HSC66, chaperone protei 26.6 1.2E+02 0.0041 30.6 6.9 38 53-96 172-209 (227)
126 4ev6_A Magnesium transport pro 26.5 1.7E+02 0.0057 31.0 8.3 75 135-214 169-251 (339)
127 3i00_A HIP-I, huntingtin-inter 26.5 1.3E+02 0.0043 28.5 6.5 20 137-156 15-34 (120)
128 2j69_A Bacterial dynamin-like 26.4 8.3E+02 0.028 28.5 16.2 57 41-99 437-493 (695)
129 2l3y_A Interleukin-6; cytokine 26.4 32 0.0011 34.9 2.6 52 12-64 86-138 (190)
130 1zww_A SH3-containing GRB2-lik 26.0 2.3E+02 0.0078 28.9 9.0 93 7-102 113-208 (256)
131 1yvl_A Signal transducer and a 25.9 3.9E+02 0.013 31.9 11.9 31 5-35 150-180 (683)
132 1i5n_A Chemotaxis protein CHEA 25.8 4E+02 0.014 25.0 10.0 83 132-216 6-105 (146)
133 2jee_A YIIU; FTSZ, septum, coi 25.7 1.3E+02 0.0046 26.8 6.1 63 127-193 17-79 (81)
134 3d2f_A Heat shock protein homo 25.4 1.9E+02 0.0065 33.8 9.2 45 51-98 579-624 (675)
135 4akv_A Sorting nexin-33; trans 25.2 6.9E+02 0.024 27.2 17.3 16 199-214 348-363 (386)
136 1alu_A Interleukin-6; cytokine 25.0 81 0.0028 31.9 5.2 52 12-65 83-135 (186)
137 1m1j_C Fibrinogen gamma chain; 25.0 1.2E+02 0.004 34.1 7.0 87 9-103 41-133 (409)
138 3s84_A Apolipoprotein A-IV; fo 24.8 6.2E+02 0.021 26.5 12.8 110 42-215 14-125 (273)
139 2dnx_A Syntaxin-12; snare, HAB 24.5 1.2E+02 0.0041 28.4 6.0 56 6-61 55-113 (130)
140 1vp7_A Exodeoxyribonuclease VI 24.2 70 0.0024 29.5 4.2 35 182-216 36-71 (100)
141 2kkm_A Translation machinery-a 24.1 1.9E+02 0.0065 27.9 7.4 43 129-176 48-90 (144)
142 2gd5_A Charged multivesicular 24.1 93 0.0032 30.4 5.4 14 77-90 56-69 (179)
143 2iub_A CORA, divalent cation t 24.0 2.6E+02 0.0088 29.9 9.3 62 131-195 189-250 (363)
144 2zhg_A Redox-sensitive transcr 24.0 1.1E+02 0.0038 29.2 5.8 23 45-67 99-121 (154)
145 3onj_A T-snare VTI1; helix, HA 23.8 1.9E+02 0.0063 25.9 6.9 54 12-65 33-92 (97)
146 3trt_A Vimentin; cytoskeleton, 23.6 3.3E+02 0.011 22.9 9.7 22 135-156 54-75 (77)
147 4egw_A Magnesium transport pro 23.6 2.4E+02 0.0081 28.8 8.6 64 130-196 164-227 (280)
148 1m1j_B Fibrinogen beta chain; 23.5 5.6E+02 0.019 29.2 12.2 24 167-190 169-192 (464)
149 2p2u_A HOST-nuclease inhibitor 23.5 3.1E+02 0.011 26.9 9.0 65 130-221 16-81 (171)
150 1hci_A Alpha-actinin 2; triple 23.5 7E+02 0.024 26.7 17.2 162 6-193 239-433 (476)
151 1u4q_A Spectrin alpha chain, b 23.5 5.8E+02 0.02 25.7 18.3 26 41-68 102-127 (322)
152 1i1r_B Viral IL-6; cytokine/re 23.4 1.1E+02 0.0039 30.8 5.9 52 12-65 68-120 (181)
153 1xs8_A UPF0269 protein YGGX; h 22.9 39 0.0013 30.8 2.2 15 85-99 60-74 (91)
154 3vem_A Helicase protein MOM1; 22.9 1.7E+02 0.0056 27.8 6.4 42 7-60 37-78 (115)
155 1x79_B RAB GTPase binding effe 22.7 2.2E+02 0.0074 26.8 7.2 81 83-186 14-97 (112)
156 3rmi_A Chorismate mutase prote 22.7 3.5E+02 0.012 24.9 8.6 20 137-156 12-31 (114)
157 1t07_A Hypothetical UPF0269 pr 22.5 40 0.0014 30.9 2.2 14 85-98 62-75 (94)
158 2fxo_A Myosin heavy chain, car 22.5 4.7E+02 0.016 24.3 10.9 27 133-159 79-105 (129)
159 4gkw_A Spindle assembly abnorm 21.9 5.6E+02 0.019 24.9 10.8 104 7-147 16-129 (167)
160 1s35_A Beta-I spectrin, spectr 21.8 5.2E+02 0.018 24.5 13.0 17 47-63 77-93 (214)
161 3uul_A Utrophin; spectrin repe 21.7 62 0.0021 28.1 3.3 51 51-108 3-55 (118)
162 1lrz_A FEMA, factor essential 21.7 92 0.0032 33.9 5.3 49 138-186 248-301 (426)
163 3iox_A AGI/II, PA; alpha helix 21.6 1.5E+02 0.0051 34.1 7.0 55 7-61 14-81 (497)
164 3r84_A Mediator of RNA polymer 21.4 1.4E+02 0.0048 26.9 5.5 20 36-55 37-70 (86)
165 3uun_A Dystrophin; triple heli 21.3 92 0.0031 26.8 4.3 20 89-108 36-55 (119)
166 2p32_A Heat shock 70 kDa prote 21.3 95 0.0032 28.3 4.5 32 41-75 40-71 (120)
167 2ic6_A Nucleocapsid protein; h 21.1 3.1E+02 0.011 24.4 7.5 50 80-150 17-72 (78)
168 4etp_A Kinesin-like protein KA 21.0 95 0.0033 34.3 5.3 39 169-213 27-65 (403)
169 2yo3_A General control protein 20.8 1.3E+02 0.0043 32.2 5.8 56 127-190 206-261 (268)
170 1fio_A SSO1 protein; four heli 20.6 2.1E+02 0.0073 27.5 7.1 48 7-56 54-101 (196)
171 1urf_A Protein kinase C-like 1 20.6 3.4E+02 0.012 24.3 7.6 59 42-101 11-70 (81)
172 2nrj_A HBL B protein; enteroto 20.3 2.2E+02 0.0074 30.9 7.8 72 17-103 94-165 (346)
173 3m3w_A Pacsin3, protein kinase 20.1 1E+02 0.0034 32.6 5.0 15 202-216 278-292 (320)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.73 E-value=1.6 Score=48.89 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCC
Q 002856 137 NLVSELESQIDSFEAELEGLTVKKGKT 163 (873)
Q Consensus 137 ~~IdeL~~QiE~~EaE~E~Ls~KK~K~ 163 (873)
+.+.+|+++++.+.+|+..|..|-.+.
T Consensus 558 ~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 558 AKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455666666666666666554444443
No 2
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=90.17 E-value=4.4 Score=42.89 Aligned_cols=93 Identities=10% Similarity=0.067 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHH-HHHHhhhCCCCChhhhhhh
Q 002856 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLE-LILRLLDNDELSPEQVNDV 205 (873)
Q Consensus 127 ek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE-~lLRlL~N~~l~pe~V~~i 205 (873)
+..++.+=-..+|..|+..-+.++.++..+-.+=-.-...||..|...+..+.-|+.-.- ..+.-+-.+-...=+--++
T Consensus 198 ~~~~a~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~~~~~~~~~~~~~~~~~e~~~~~i~~id~ 277 (320)
T 3m3w_A 198 EAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQHLDLSSSDKFHELHRDLQQSIEAASD 277 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHhcCH
Confidence 333455555567888888888888777554110001122455666555555544442110 1111000000000011136
Q ss_pred hhHHHHHHHhCCCC
Q 002856 206 KDLLEDYVERNQDD 219 (873)
Q Consensus 206 kddieyYve~nqdd 219 (873)
..||+.||+.+...
T Consensus 278 ~~Di~~fi~~~gtG 291 (320)
T 3m3w_A 278 EEDLRWWRSTHGPG 291 (320)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhcCCC
Confidence 68899999987653
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=90.15 E-value=0.48 Score=58.65 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 002856 39 NQKEKFEADLKKEIKKLQRYRDQIKTW 65 (873)
Q Consensus 39 nQKEKlE~DLKKEIKKLQR~RDQIKtW 65 (873)
.++++++..|+++.+.|+...+++...
T Consensus 892 ~e~~~l~~~L~~e~~~l~~~e~~l~~l 918 (1184)
T 1i84_S 892 EEKNLLQEKLQAETELYAEAEEMRVRL 918 (1184)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665555555444
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.02 E-value=1.9 Score=48.40 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 002856 83 ALVDARKLIEREMERF 98 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErF 98 (873)
.|...++.|+.+.+++
T Consensus 478 ~l~~~~~~i~~~~~~~ 493 (597)
T 3oja_B 478 LLQGLHAEIDTNLRRY 493 (597)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhhc
Confidence 4555555555555543
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=86.85 E-value=0.45 Score=58.91 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=2.3
Q ss_pred hhhhHH
Q 002856 7 LQGEID 12 (873)
Q Consensus 7 LQ~EID 12 (873)
|..|++
T Consensus 862 L~~eL~ 867 (1184)
T 1i84_S 862 KDEELQ 867 (1184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 6
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=84.98 E-value=24 Score=35.57 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHH--------HHHHHHhhhCCCCChhhhhhhh
Q 002856 135 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMK--------LELILRLLDNDELSPEQVNDVK 206 (873)
Q Consensus 135 L~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~k--------LE~lLRlL~N~~l~pe~V~~ik 206 (873)
...+|..++.....++.++..+-..=-.-..+|+..|...+..+--|+.. +|.|...+++ + +..
T Consensus 179 Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~le~~R~~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--i------d~~ 250 (276)
T 2v0o_A 179 YKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIHIKEIIGSLSNAIKEIHLQIGQVHEEFINNMAN--T------TVE 250 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--S------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh--C------CHH
Confidence 33456666666666655543331000001124566666655544433332 2222222221 1 356
Q ss_pred hHHHHHHHhCCCC
Q 002856 207 DLLEDYVERNQDD 219 (873)
Q Consensus 207 ddieyYve~nqdd 219 (873)
.||..||+.+...
T Consensus 251 ~D~~~fi~~~~tg 263 (276)
T 2v0o_A 251 SLIQKFAESKGTG 263 (276)
T ss_dssp HHHHHHHHHHCCB
T ss_pred HHHHHHHHhcCCC
Confidence 7899999988764
No 7
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=81.94 E-value=9.6 Score=38.86 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHhCCCCC
Q 002856 204 DVKDLLEDYVERNQDDF 220 (873)
Q Consensus 204 ~ikddieyYve~nqddf 220 (873)
+...||..||+.|...|
T Consensus 265 d~~~D~~~fi~~~~tg~ 281 (305)
T 2efl_A 265 DQKNDSQLVIEAYKSGF 281 (305)
T ss_dssp CHHHHHHHHHHHHCCCC
T ss_pred CchhhHHHHHHHcCCCC
Confidence 35678999999887643
No 8
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.54 E-value=11 Score=43.60 Aligned_cols=52 Identities=13% Similarity=0.276 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 002856 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELIL 189 (873)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lL 189 (873)
+-..=++.+-++|+++|+-|+.+|...- .+|..|+..|+..+--|.|||.-+
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQl--------snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKV--------QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556678888888777776531 355667777777777777777644
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.42 E-value=20 Score=36.87 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHH
Q 002856 39 NQKEKFEADLKKEIKKLQRYRDQIKT 64 (873)
Q Consensus 39 nQKEKlE~DLKKEIKKLQR~RDQIKt 64 (873)
.+..++|.|+..--.++.|++.++.+
T Consensus 60 ~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 60 LQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566777777777777777777753
No 10
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=81.14 E-value=60 Score=34.35 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=16.3
Q ss_pred HHHHhhhHHHhHHHHHHHHHHh
Q 002856 11 IDRVLKKVQEGVDVFDSIWNKV 32 (873)
Q Consensus 11 IDr~lKKV~EGve~Fd~i~~K~ 32 (873)
++.+++++..|+...+++-+=+
T Consensus 31 ~~~L~~r~~~g~~~~~el~~f~ 52 (350)
T 3aco_A 31 YKRTVKRIDDGHRLCSDLMNCL 52 (350)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888877775544
No 11
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=81.10 E-value=9.9 Score=34.61 Aligned_cols=97 Identities=20% Similarity=0.279 Sum_probs=62.5
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchh--HHHHHHHHHHHHHHH-HHhHHHHHHhhccccc-cccc-cc---hhh
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLKKEIKKL-QRYRDQIKTWIQSSEI-KDKK-VS---ASY 80 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQ--KEKlE~DLKKEIKKL-QR~RDQIKtW~~s~eI-KDK~-~~---~~~ 80 (873)
.||...+.+|.+-|+.....++++.++.+... |+++|... .||+++ ..+|+.||.--..++- .++. ++ -+-
T Consensus 15 ~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~-~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir 93 (127)
T 1ez3_A 15 EEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELM-SDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIR 93 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Confidence 47888889999999999999999887665443 66665443 566655 4467777765443321 0000 01 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002856 81 EQALVDARKLIEREMERFKICEKETK 106 (873)
Q Consensus 81 ~~~L~e~Rk~IE~~MErFK~vEKe~K 106 (873)
.....-.++..-..|..|-.+|.+-|
T Consensus 94 ~~q~~~L~~kf~e~m~~y~~~q~~yr 119 (127)
T 1ez3_A 94 KTQHSTLSRKFVEVMSEYNATQSDYR 119 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23556677888889999998887654
No 12
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=78.46 E-value=22 Score=31.87 Aligned_cols=84 Identities=15% Similarity=0.281 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc-----cccccccccCCCCCC
Q 002856 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETK-----TKAFSKEGLGQQPKT 121 (873)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~K-----tKafSkEGL~~~~k~ 121 (873)
++...|.++++++.++. .|...++.++.+....+.+-.|.+ ++-|-.-|=..
T Consensus 7 e~Q~~i~~~~~l~~~~~-------------------~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vf---- 63 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQ-------------------LVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLI---- 63 (117)
T ss_dssp HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEE----
T ss_pred HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHH----
Confidence 45567777888777775 344444555555554444444332 35665555221
Q ss_pred CchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEG 155 (873)
Q Consensus 122 Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~ 155 (873)
-+..+.++...|..-++.|...|+.++..++.
T Consensus 64 --v~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~ 95 (117)
T 2zqm_A 64 --VKTTKDKAVAELKEKIETLEVRLNALERQEKK 95 (117)
T ss_dssp --EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13344555555555555555555555555444
No 13
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=78.43 E-value=46 Score=34.40 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
+.+=....|..++..-..++.++..+
T Consensus 211 a~~~Y~~~v~~~n~~~~~~~~~~~~~ 236 (312)
T 3abh_A 211 TKEKYEKSLKELDQGTPQYMENMEQV 236 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33334456777777777777666443
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.12 E-value=5.5 Score=49.33 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 002856 44 FEADLKKEIKKLQR 57 (873)
Q Consensus 44 lE~DLKKEIKKLQR 57 (873)
+|..+.+|+.+|++
T Consensus 954 ~~~~~~~e~~~L~~ 967 (1080)
T 2dfs_A 954 LEITYSTETEKLRS 967 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 34444444444443
No 15
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=76.06 E-value=19 Score=34.98 Aligned_cols=99 Identities=18% Similarity=0.296 Sum_probs=58.5
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchh--HHHHHHHHHHHHHHH-HHhHHHHHHhhcccc-cccc-ccch---hh
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLKKEIKKL-QRYRDQIKTWIQSSE-IKDK-KVSA---SY 80 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQ--KEKlE~DLKKEIKKL-QR~RDQIKtW~~s~e-IKDK-~~~~---~~ 80 (873)
++|...+.+|.+-|..++..+.++..+.+... |++++... .+|++| ..+|..||.--...+ .+++ ..++ +-
T Consensus 46 ~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~-~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir 124 (180)
T 1s94_A 46 EEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELM-TDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIR 124 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHH
Confidence 57888899999999999999999877655433 56665433 445444 335555555432210 0000 0011 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002856 81 EQALVDARKLIEREMERFKICEKETKTK 108 (873)
Q Consensus 81 ~~~L~e~Rk~IE~~MErFK~vEKe~KtK 108 (873)
.....-.++..-..|..|..++...|.+
T Consensus 125 ~~q~~~L~~kf~~~m~~yq~~q~~y~~~ 152 (180)
T 1s94_A 125 KTQYSTISRKFVEVMSDYNTTQIDYRDR 152 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2355667788889999999998886654
No 16
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=76.00 E-value=10 Score=42.34 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=28.4
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcC------------CCchhHHHHHHHHHHHHHHHHHhHHHH
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDT------------DNANQKEKFEADLKKEIKKLQRYRDQI 62 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a------------~n~nQKEKlE~DLKKEIKKLQR~RDQI 62 (873)
+|+|+++.+++++|..--..|+..+..+..+ .+..+.||++..++|-..|++..++.-
T Consensus 139 ~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y 208 (486)
T 3haj_A 139 RKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKY 208 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666555565544433322 112344555555555555555444433
No 17
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=75.82 E-value=11 Score=41.16 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---
Q 002856 82 QALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV--- 158 (873)
Q Consensus 82 ~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~--- 158 (873)
..|.+..+.|+..+++.+ .+.+..++..+|+.-|+++++-.-++|++...+.+
T Consensus 373 eal~~~~~~i~~~l~~~~------------------------~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (471)
T 3mq9_A 373 EALKDAQTRITAARDGLR------------------------AVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVM 428 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhH------------------------HHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHH
Confidence 366666666666666642 35666788899999999998888888887765521
Q ss_pred -------ccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002856 159 -------KKGKTRPPRLTHLETSITRHKAHIMKLELILRL 191 (873)
Q Consensus 159 -------KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRl 191 (873)
||......|+++||..|...+..|..++--++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 429 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333223458888888887777777776654443
No 18
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=75.07 E-value=23 Score=31.33 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh-----ccccccccccCCCCCCC
Q 002856 48 LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKET-----KTKAFSKEGLGQQPKTD 122 (873)
Q Consensus 48 LKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~-----KtKafSkEGL~~~~k~D 122 (873)
|-..|.++|+++.++. .|...|+.++.+....+.+-.|. -++-|-.-|=+.
T Consensus 3 ~Q~~i~~f~~lq~~~~-------------------~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vf----- 58 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQ-------------------AISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNIL----- 58 (107)
T ss_dssp HHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEE-----
T ss_pred HHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHH-----
Confidence 4556777888877775 34445555555555555444443 245676555322
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 123 PKEKAKSETRDWLNNLVSELESQIDSFEAELEG 155 (873)
Q Consensus 123 p~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~ 155 (873)
-+..+.++..-|..-++.|...|+.++..++.
T Consensus 59 -v~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~ 90 (107)
T 1fxk_A 59 -IRVAKDELTEELQEKLETLQLREKTIERQEER 90 (107)
T ss_dssp -EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334455545555555555555444444433
No 19
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=74.82 E-value=3.6 Score=37.75 Aligned_cols=62 Identities=26% Similarity=0.446 Sum_probs=35.6
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccc-cccccccchhhHHHH
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS-EIKDKKVSASYEQAL 84 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~-eIKDK~~~~~~~~~L 84 (873)
.+|+|++-+|.+...-|+.+ +.||+.|||.|.+-=++|-.-+... -+|+|.
T Consensus 29 QVQqELs~tfarLc~~Vd~t-------------------~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA--------- 80 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDMT-------------------QKHLEEEIARLSKEIDQLEKMQNNSKLLRNKA--------- 80 (96)
T ss_dssp ------CCHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---------
Confidence 47889998888887777655 4577777777766555554433321 224444
Q ss_pred HHHHHHHHHHHHHHH
Q 002856 85 VDARKLIEREMERFK 99 (873)
Q Consensus 85 ~e~Rk~IE~~MErFK 99 (873)
-.|+.+.|+|.
T Consensus 81 ----~~L~~eLe~F~ 91 (96)
T 1t3j_A 81 ----VQLESELENFS 91 (96)
T ss_dssp ----HHHHHHHHHHH
T ss_pred ----HHHHHHHHHHH
Confidence 56788888885
No 20
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=70.19 E-value=12 Score=37.20 Aligned_cols=82 Identities=9% Similarity=0.104 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCC--CCChhhhhhhh
Q 002856 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND--ELSPEQVNDVK 206 (873)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~--~l~pe~V~~ik 206 (873)
.--.+||++...-=++=++.+..-++.+. .++=.+.|+.+++-++-||.+||.|++.|.-. .+..+-+..|-
T Consensus 15 dlf~~~L~Diy~aE~q~~~aL~~~~~~a~------~p~Lk~~l~~H~~eT~~qi~rLe~i~~~lg~~~~~~~c~am~gli 88 (173)
T 2gyq_A 15 DLLLHGLRDIYYAEQQITKALPKMIEQAT------NRDLSQGLTSHLEETQKQIERLDQVFKKLGQKPSGVNCPAIDGLI 88 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHH
Confidence 45677887766533333344444433332 22233458888889999999999999999864 35557777777
Q ss_pred hHHHHHHHhC
Q 002856 207 DLLEDYVERN 216 (873)
Q Consensus 207 ddieyYve~n 216 (873)
+..+..++..
T Consensus 89 ~e~~~~~~~~ 98 (173)
T 2gyq_A 89 KEADETAGEI 98 (173)
T ss_dssp HHHHHHHHTB
T ss_pred HHHHHHHhcc
Confidence 7777777643
No 21
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=69.79 E-value=13 Score=34.12 Aligned_cols=58 Identities=14% Similarity=0.329 Sum_probs=51.9
Q ss_pred ccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHH
Q 002856 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62 (873)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQI 62 (873)
.|.+.+|+++-.--+++-+..-..-|+.|. +=-+.+|.|||.++++-++.|+|+-|..
T Consensus 11 lr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~-sWqDqkr~kFee~fe~l~s~l~~f~e~a 68 (94)
T 3fx7_A 11 VREFVGHLERFKELLREEVNSLSNHFHNLE-SWRDARRDKFSEVLDNLKSTFNEFDEAA 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-SCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477889999999999999999999999995 6678889999999999999999998754
No 22
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=67.93 E-value=1.1e+02 Score=33.58 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002856 127 AKSETRDWLNNLVSELESQIDSFEAEL-EGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (873)
Q Consensus 127 ek~E~~~wL~~~IdeL~~QiE~~EaE~-E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N 194 (873)
+..+++.=...+-..+...++.|+.+- .-+ +..=++-++..|.-|+-.++.||.+|..+++
T Consensus 324 ~~~e~~~r~e~IS~~~~~El~rF~~~Rv~Df-------k~~l~eyle~qi~~~~~~~~~le~~l~~f~~ 385 (386)
T 4akv_A 324 EADGIRRRCRVVGFALQAEMNHFHQRRELDF-------KHMMQNYLRQQILFYQRVGQQLEKTLRMYDN 385 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344555545555666666666666652 111 0112345666777888899999999988764
No 23
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase family 9, phosphotransfer, transferase two-component system; 2.30A {Rhodopseudomonas palustris}
Probab=66.64 E-value=19 Score=34.31 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHH
Q 002856 137 NLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAH 181 (873)
Q Consensus 137 ~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~H 181 (873)
..+|.++..++.+..+-+.|-..+. ....+....-..++.|..|
T Consensus 120 ~~md~iR~~~~~~~~~E~~lL~~R~-~~~~~~~~~~~~~~~~~~~ 163 (164)
T 3va9_A 120 RLTERIETSLSVLTRAEQALLIQRL-SKHDRESLAAALLEHHHHH 163 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccC
Confidence 4688888888888887766643332 2223334455566666555
No 24
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=66.62 E-value=1.2e+02 Score=30.91 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=12.5
Q ss_pred hhhHHHHHHHhCCCCC
Q 002856 205 VKDLLEDYVERNQDDF 220 (873)
Q Consensus 205 ikddieyYve~nqddf 220 (873)
...||..||+.|...|
T Consensus 259 ~~~D~~~fi~~~~~g~ 274 (301)
T 2efk_A 259 PKNDSHVLIELHKSGF 274 (301)
T ss_dssp HHHHHHHHHHHTGGGC
T ss_pred chhhHHHHHHHcCCCC
Confidence 5688999999887644
No 25
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=65.36 E-value=24 Score=32.71 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=28.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
|+...||.+||+.-|+.|+.+++.++.+++.+
T Consensus 83 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l 114 (133)
T 1fxk_C 83 KKNFEDAMESIKSQKNELESTLQKMGENLRAI 114 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999887665
No 26
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=63.75 E-value=59 Score=31.48 Aligned_cols=93 Identities=15% Similarity=0.287 Sum_probs=52.6
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCch----hHHHHHHHHHHHHHHH-HHhHHHHHHhhccc-cccccccchhh
Q 002856 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNAN----QKEKFEADLKKEIKKL-QRYRDQIKTWIQSS-EIKDKKVSASY 80 (873)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~n----QKEKlE~DLKKEIKKL-QR~RDQIKtW~~s~-eIKDK~~~~~~ 80 (873)
.-.||...+.+|..-|..+...+.++..+.... -|+++|... .+|++| .+++..||.--..+ +.+-++
T Consensus 10 ~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~-~~i~~~~~~~~~~lk~l~~~~~~~r~~k----- 83 (196)
T 1fio_A 10 KISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFV-AQATDLQFKLKNEIKSAQRDGIHDTNKQ----- 83 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTTCHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcchhhhHHH-----
Confidence 346888889999999999999999987766554 466666432 233322 33444444322211 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002856 81 EQALVDARKLIEREMERFKICEKETK 106 (873)
Q Consensus 81 ~~~L~e~Rk~IE~~MErFK~vEKe~K 106 (873)
....-.++.+-..|..|..+++..+
T Consensus 84 -~~~~~L~~~f~~~~~~fq~~Q~~~~ 108 (196)
T 1fio_A 84 -AQAENSRQRFLKLIQDYRIVDSNYK 108 (196)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333444555555666666655543
No 27
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=62.31 E-value=2.5 Score=35.93 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CChhhhhhhhhH
Q 002856 167 RLTHLETSITRHKAHIMKLELILRLLDNDE-LSPEQVNDVKDL 208 (873)
Q Consensus 167 r~~~le~~ierhk~Hi~kLE~lLRlL~N~~-l~pe~V~~ikdd 208 (873)
|+.++-.-++|.|-||.+||-+|=-+..|+ |..+++.+|...
T Consensus 5 kv~~vl~ELeRlkveiQRLE~ml~p~~~~e~v~eeEl~ei~~e 47 (67)
T 1wmi_B 5 KVGDVLKELERLKVEIQRLEAMLMPEERDEDITEEEIAELLEL 47 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTSCBCCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHH
Confidence 344456678999999999999988566665 998888887543
No 28
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=60.23 E-value=4.7 Score=37.72 Aligned_cols=91 Identities=9% Similarity=0.154 Sum_probs=19.4
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHH
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQAL 84 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L 84 (873)
.+|+.+..+.-+.++.=-..|+..+++++.+-+.++|++.|.+|.+....+|+++.... .++.. .-
T Consensus 26 ~~l~~~~~~~~~el~~~~~el~~~~~~lq~~ls~~~~~~~~~el~~~~~~~q~~~~~~~-----~~l~~---------~~ 91 (143)
T 1u2m_A 26 NTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFE-----QDRAR---------RS 91 (143)
T ss_dssp TTTC--------------------------------------------------------------CHH---------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH---------HH
Confidence 34444444444444444455666666666445677899999999988888888877632 22222 33
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccc
Q 002856 85 VDARKLIEREMERFKICEKETKTKAFS 111 (873)
Q Consensus 85 ~e~Rk~IE~~MErFK~vEKe~KtKafS 111 (873)
.+.++.|..++. ++|++-.|.+.|+
T Consensus 92 ~~~~~~i~~~i~--~ai~~vak~~gy~ 116 (143)
T 1u2m_A 92 NEERGKLVTRIQ--TAVKSVANSQDID 116 (143)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHH--HHHHHHHHHCCCe
Confidence 445555555443 5688888888876
No 29
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=60.00 E-value=28 Score=31.24 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhh
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVND 204 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ 204 (873)
..++|.++++.|+.=|+.-+.|. +....-..-+..||+.++.+|..+-|+|+++-.
T Consensus 25 ~le~Lee~leKl~~VveERree~------------------~~~~~~~~er~~Kl~~~~e~l~~~GI~~eeL~~ 80 (86)
T 3nr7_A 25 TLETLEEMLEKLEVVVNERREEE------------------SAAAAEVEERTRKLQQYREMLIADGIDPNELLN 80 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 45667777777766666555553 333444556789999999999999999998753
No 30
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.85 E-value=1.2e+02 Score=33.76 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 002856 42 EKFEADLKKEIKKLQR 57 (873)
Q Consensus 42 EKlE~DLKKEIKKLQR 57 (873)
+|.|-||++.|-||..
T Consensus 59 dk~er~~~~rIe~L~~ 74 (390)
T 1deq_A 59 DEVDQDFTSRINKLRD 74 (390)
T ss_pred HHhhhhHHHHHHHHHH
Confidence 4555666666666643
No 31
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=58.58 E-value=14 Score=35.26 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=41.8
Q ss_pred CccccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCC-----chhHHHHHHHHHHHHHH
Q 002856 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN-----ANQKEKFEADLKKEIKK 54 (873)
Q Consensus 1 Maa~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n-----~nQKEKlE~DLKKEIKK 54 (873)
||+..-++.||+.++.-|.+-+..-+.|.++..++.. ..--.|+=.||-++|+|
T Consensus 1 ~~nl~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKIIkDisdkId~ 59 (129)
T 3f6n_A 1 MANLNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLIND 59 (129)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHHhc
Confidence 8888899999999999999999999999999988554 12244555677776665
No 32
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=58.37 E-value=21 Score=35.11 Aligned_cols=79 Identities=5% Similarity=0.069 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh-hhCC--CCChhhhhhhh
Q 002856 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRL-LDND--ELSPEQVNDVK 206 (873)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRl-L~N~--~l~pe~V~~ik 206 (873)
--.+||++...-=++=++.+..-++.+ ..++=.+.|+.+++-++-||.+||.|++. |.-. .+..+-+..|-
T Consensus 9 lf~~~L~D~y~aE~q~~~al~~~~~~a------~~p~Lk~~l~~h~~eT~~qi~rLe~i~~~~lg~~~~~~~c~am~gli 82 (166)
T 2gs4_A 9 VFIHLLSDTYSAEKQLTRALAKLARAT------SNEKLSQAFHAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEGLI 82 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC------SCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHH
Confidence 355666665543222223333333222 22333455888888999999999999999 7753 34557777766
Q ss_pred hHHHHHHH
Q 002856 207 DLLEDYVE 214 (873)
Q Consensus 207 ddieyYve 214 (873)
+.-+..++
T Consensus 83 ~e~~~~~~ 90 (166)
T 2gs4_A 83 EEANEVIE 90 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 66666664
No 33
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.16 E-value=1.7e+02 Score=32.75 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
-..-|+..|+.+...|..||-.|+..
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568889999999999999999654
No 34
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=56.95 E-value=89 Score=32.64 Aligned_cols=15 Identities=13% Similarity=0.147 Sum_probs=10.7
Q ss_pred hhhhHHHHHHHhCCC
Q 002856 204 DVKDLLEDYVERNQD 218 (873)
Q Consensus 204 ~ikddieyYve~nqd 218 (873)
+...||..||+.+..
T Consensus 276 d~~~Di~~fi~~~~t 290 (337)
T 2x3v_A 276 DAQEDLRWFRSTSGP 290 (337)
T ss_dssp CHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHHHhCC
Confidence 356778888887755
No 35
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=56.09 E-value=1.1e+02 Score=30.94 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 81 EQALVDARKLIEREMERFKICEKET 105 (873)
Q Consensus 81 ~~~L~e~Rk~IE~~MErFK~vEKe~ 105 (873)
...|.+.|..|+.+++.|+.+|.+-
T Consensus 85 ~~~Le~~r~~l~~~l~~~~~L~~~~ 109 (192)
T 2p22_C 85 FEDLHEQKDKVQALLENARILESKY 109 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999987
No 36
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=55.58 E-value=1.3e+02 Score=34.27 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=17.5
Q ss_pred HHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH
Q 002856 18 VQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR 57 (873)
Q Consensus 18 V~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR 57 (873)
|..-|+..+.+-+.|.+.++ -=..|...|+..++++|+
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts--~~~~~i~~Iq~slk~~Q~ 135 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTST--TMYQYVNMIDNKLVKTQK 135 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHhhcccc
Confidence 44444555555555532211 112344456666666654
No 37
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=55.29 E-value=83 Score=27.14 Aligned_cols=44 Identities=14% Similarity=0.270 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhhCCCCChhhhhhhhhHHHHH
Q 002856 169 THLETSITRHKAHIMKLELIL-RLLDNDELSPEQVNDVKDLLEDY 212 (873)
Q Consensus 169 ~~le~~ierhk~Hi~kLE~lL-RlL~N~~l~pe~V~~ikddieyY 212 (873)
..++.-|..|+-.|..+...- ++|..+..+++....|++.++..
T Consensus 46 ~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l 90 (119)
T 3uun_A 46 EGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLL 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 456666666666666665444 45667777787777777766654
No 38
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=54.94 E-value=29 Score=43.10 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhHHHHHHhh
Q 002856 48 LKKEIKKLQRYRDQIKTWI 66 (873)
Q Consensus 48 LKKEIKKLQR~RDQIKtW~ 66 (873)
|++|+.||+..-|.+..|+
T Consensus 1028 L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 39
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=53.74 E-value=1.2e+02 Score=32.26 Aligned_cols=43 Identities=12% Similarity=0.266 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHHHHHH--------HHHHHHhhhCCCCChhhhhhhhhHHHHHHHhC
Q 002856 166 PRLTHLETSITRHKAHIMK--------LELILRLLDNDELSPEQVNDVKDLLEDYVERN 216 (873)
Q Consensus 166 ~r~~~le~~ierhk~Hi~k--------LE~lLRlL~N~~l~pe~V~~ikddieyYve~n 216 (873)
+||..|...+.+..-|+.- -|.++..|. .++ +-+||+.|++..
T Consensus 217 eRL~~Lkd~L~~y~~~~sd~~~~~~~~~E~~~~~ll--~~d------ve~eI~~Fa~~~ 267 (287)
T 3g9g_A 217 NRLDTLKNCMLRFQTSFSDYLLNTTKECETVMTKFL--AFE------PQSEIDRFAKDA 267 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCC------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCC------HHHHHHHHHHHH
Confidence 4888888888777666543 233343333 233 345677777654
No 40
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=52.87 E-value=1.5e+02 Score=32.99 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHhCCC
Q 002856 204 DVKDLLEDYVERNQD 218 (873)
Q Consensus 204 ~ikddieyYve~nqd 218 (873)
+...||+.||+++..
T Consensus 278 d~~~Di~~Fi~~~gt 292 (486)
T 3haj_A 278 DAVEDLRWFRANHGP 292 (486)
T ss_dssp CHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHhCC
Confidence 467888999998765
No 41
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=51.04 E-value=75 Score=32.48 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=20.5
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCC
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD 36 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~ 36 (873)
+|+|+++..+++.|..--..|+..+.....+.
T Consensus 124 ~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~~a~ 155 (290)
T 3i2w_A 124 KKAQKPWAKLLAKVEKAKADYHSACKTERSAT 155 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666677777777777776655443
No 42
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=50.95 E-value=75 Score=32.92 Aligned_cols=60 Identities=13% Similarity=0.245 Sum_probs=40.5
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchh----HHHHHHHHHHHHHHH-HHhHHHHHHhh
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ----KEKFEADLKKEIKKL-QRYRDQIKTWI 66 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQ----KEKlE~DLKKEIKKL-QR~RDQIKtW~ 66 (873)
++-.+|...+.+|..-|..+..++.++..+..... +++++ +|-.+|++| .+++..||.--
T Consensus 48 ~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie-~l~~~i~~~~~~i~~~lk~l~ 112 (279)
T 2xhe_B 48 NRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQ-DTMARISALGNKIRADLKQIE 112 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34568888899999999999999988776655544 56665 444555543 45555555443
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.64 E-value=2.7e+02 Score=30.46 Aligned_cols=17 Identities=6% Similarity=-0.011 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 002856 139 VSELESQIDSFEAELEG 155 (873)
Q Consensus 139 IdeL~~QiE~~EaE~E~ 155 (873)
|+.|+++.+.++-+++.
T Consensus 444 ~~~~~~~~~~~~~~~~~ 460 (487)
T 3oja_A 444 ETQLAEENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhh
Confidence 33333333333333333
No 44
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=50.45 E-value=1.3e+02 Score=41.65 Aligned_cols=21 Identities=5% Similarity=0.113 Sum_probs=11.5
Q ss_pred hhHHHHhhhHHHhHHHHHHHH
Q 002856 9 GEIDRVLKKVQEGVDVFDSIW 29 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~ 29 (873)
.||+.-.+++.-|++=-++.-
T Consensus 1913 ~el~~~~~rl~~GL~KL~et~ 1933 (3245)
T 3vkg_A 1913 DQLEEEQLHLNIGLKKLRDTE 1933 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666665444443
No 45
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=49.58 E-value=41 Score=32.78 Aligned_cols=123 Identities=13% Similarity=0.200 Sum_probs=0.0
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcccccc-ccccchhhHHHHHHHH
Q 002856 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK-DKKVSASYEQALVDAR 88 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIK-DK~~~~~~~~~L~e~R 88 (873)
+|...|..+.+.-+.|...|.+- +.+|+.-| ++.+..|-=+++..|+..-+-. ... .+-+.-
T Consensus 89 ~i~~~l~~L~~~w~~L~~~~~~R--------~~~L~q~l--~l~~F~~d~~~~~~WL~~~e~~L~~~-------~~g~s~ 151 (218)
T 3fb2_A 89 EIKQKLDILDQERADLEKAWVQR--------RMMLDQCL--ELQLFHRDCEQAENWMAAREAFLNTE-------DKGDSL 151 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCC-------CCCCCH
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 89 KLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE----TRDWLNNLVSELESQIDSFEAELEG 155 (873)
Q Consensus 89 k~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E----~~~wL~~~IdeL~~QiE~~EaE~E~ 155 (873)
--+|..+.+++++|+++....-.=..|.. .-..-.+ ..+.|...+++|+.+-+.+-..+..
T Consensus 152 ~~ve~ll~~h~~f~~~l~~~~~~v~~l~~------~~~~L~~~~h~~~~~I~~~~~~l~~rW~~l~~~l~~ 216 (218)
T 3fb2_A 152 DSVEALIKKHEDFDKAINVQEEKIAALQA------FADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIE 216 (218)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHH------HHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHH------HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
No 46
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=49.12 E-value=3.4e+02 Score=37.98 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 002856 137 NLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 137 ~~IdeL~~QiE~~EaE~E~L 156 (873)
+.|.+|+..++.++++++.+
T Consensus 2035 ~~L~~le~~l~~L~~~~~~~ 2054 (3245)
T 3vkg_A 2035 ATITALEKSIATYKEEYATL 2054 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544
No 47
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=48.98 E-value=83 Score=34.38 Aligned_cols=16 Identities=0% Similarity=0.021 Sum_probs=11.6
Q ss_pred hhhHHHHHHHhCCCCC
Q 002856 205 VKDLLEDYVERNQDDF 220 (873)
Q Consensus 205 ikddieyYve~nqddf 220 (873)
...|+..||+.|...|
T Consensus 258 ~~~D~~~Fi~~~~tg~ 273 (406)
T 4dyl_A 258 PEAEYQGFLRQYGSAP 273 (406)
T ss_dssp GGGTTHHHHHHHCCCC
T ss_pred cHHHHHHHHHHcCCCC
Confidence 4578888888886544
No 48
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=48.80 E-value=1.3e+02 Score=26.07 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhCCCCChhhhhhhhhHHHHH
Q 002856 169 THLETSITRHKAHIMKLELI-LRLLDNDELSPEQVNDVKDLLEDY 212 (873)
Q Consensus 169 ~~le~~ierhk~Hi~kLE~l-LRlL~N~~l~pe~V~~ikddieyY 212 (873)
..++.-|..|+-.|..|... -++++.+...+++...|++.|+..
T Consensus 46 ~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l 90 (118)
T 3uul_A 46 ETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLL 90 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 34555556666666655443 355667777777777777666544
No 49
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=48.65 E-value=12 Score=32.77 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 002856 46 ADLKKEIKKLQRYRDQIKT 64 (873)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKt 64 (873)
.+||||||||+|.=-|.|.
T Consensus 6 ~eLkkevkKL~~~A~q~km 24 (71)
T 2js5_A 6 EELKAKLKKLNAQATALKM 24 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4799999999998877775
No 50
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=47.91 E-value=99 Score=35.97 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=19.2
Q ss_pred HHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 002856 53 KKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF 98 (873)
Q Consensus 53 KKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErF 98 (873)
+.+++++++-+.+.. --+|- +..|.+..+.+|..=+.|
T Consensus 438 ~~~~~~~~~Y~~~~~-kg~~~-------~~vl~~fl~~~~~~~~~i 475 (592)
T 1f5n_A 438 QKLQDLKKKYYEEPR-KGIQA-------EEILQTYLKSKESMTDAI 475 (592)
T ss_dssp HHHHHHHHHHHHSSC-CCTTH-------HHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CcccH-------HHHHHHHHHHHHHHHHHH
Confidence 345566666655422 12222 236777766665554444
No 51
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=47.60 E-value=36 Score=38.18 Aligned_cols=85 Identities=18% Similarity=0.329 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----------------ccC-CCCc--------------hhhHHHHHHHH
Q 002856 128 KSETRDWLNNLVSELESQIDSFEAELEGLTV----------------KKG-KTRP--------------PRLTHLETSIT 176 (873)
Q Consensus 128 k~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~----------------KK~-K~~~--------------~r~~~le~~ie 176 (873)
-++..+||...-....+.|+.||..|+.|+. ++. |..+ +.+..++..|.
T Consensus 22 tCgl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~ 101 (411)
T 3ghg_C 22 TCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASIL 101 (411)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777777777777666631 121 2111 24455677778
Q ss_pred HHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCC
Q 002856 177 RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 218 (873)
Q Consensus 177 rhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~nqd 218 (873)
+|.--|..|+.++...+ ..|..|++.|....+...+
T Consensus 102 ~~~~~i~~l~~~~~~~~------~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 102 THDSSIRYLQEIYNSNN------QKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHTTSCS
T ss_pred hhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhcc
Confidence 88888888888877664 5888999999888776654
No 52
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=46.91 E-value=2.5e+02 Score=28.58 Aligned_cols=28 Identities=7% Similarity=0.249 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 129 SETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
.++.+=-..+|..++..-..++.++-.+
T Consensus 187 ~~a~~~Y~~~v~~~n~~~~~~~~~~p~~ 214 (290)
T 3i2w_A 187 QKCREKYEQAIAEITKYNSVYIEDMTSV 214 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344444556777887777787776554
No 53
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=46.55 E-value=85 Score=32.60 Aligned_cols=97 Identities=20% Similarity=0.278 Sum_probs=58.1
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHH-HHhHHHHHHhhcccc---ccccccc--hhh
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNA--NQKEKFEADLKKEIKKL-QRYRDQIKTWIQSSE---IKDKKVS--ASY 80 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~--nQKEKlE~DLKKEIKKL-QR~RDQIKtW~~s~e---IKDK~~~--~~~ 80 (873)
.||...+.+|..-|+.++..+.++..+.+. .-|++++. |-.+|+++ .+++..||.--.... -++.... ..-
T Consensus 38 ~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~-l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~~e~Rir 116 (267)
T 1dn1_B 38 EEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEE-LMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIR 116 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHH
Confidence 578888999999999999999998876654 34666665 55555554 345555555432211 0010000 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002856 81 EQALVDARKLIEREMERFKICEKETK 106 (873)
Q Consensus 81 ~~~L~e~Rk~IE~~MErFK~vEKe~K 106 (873)
.....-.++..-..|..|..++++-+
T Consensus 117 k~q~~~L~~~f~~~m~~yq~~Q~~y~ 142 (267)
T 1dn1_B 117 KTQHSTLSRKFVEVMSEYNATQSDYR 142 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12444556667777888887766543
No 54
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=46.02 E-value=1e+02 Score=30.92 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~ 196 (873)
..+..-.++++|+.++|.+|.++- . + .+..-.++-.|+..+-+.+..+.-+..+|..|.++.
T Consensus 156 ivd~y~~~l~~l~~~id~lE~~l~--~-~-~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 217 (264)
T 3nvo_A 156 LTDHASEFIEELHDKIIDLEDNLL--D-Q-QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASER 217 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC--------CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--c-C-CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 455555666666777776666652 1 2 333457899999999999999999988888887654
No 55
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=45.06 E-value=67 Score=31.29 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=25.6
Q ss_pred CCCchHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002856 120 KTDPKEKAKSETRDWLNNLVSELESQIDSFEA 151 (873)
Q Consensus 120 k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~Ea 151 (873)
|.||.=.++.+=|++|.+-+..|.+.|-.++.
T Consensus 106 K~dp~y~ekK~Rc~yL~~KLsHIK~lI~~YD~ 137 (140)
T 1xaw_A 106 KGSADYKSKKNHCKQLKSKLSHIKKMVGDYDR 137 (140)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34887666677788999999999999987764
No 56
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=44.85 E-value=4.4e+02 Score=30.87 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=24.5
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ 56 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQ 56 (873)
|..-++++.-+|++.+--|.||--|.-+++-.. .+-...+..|++|...||
T Consensus 15 ~~~~q~~e~~~k~Le~~Qe~f~~~y~~~~~~~~-~~~~~~~~~~~~~~~~l~ 65 (575)
T 1bf5_A 15 KDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREH-ETNGVAKSDQKQEQLLLK 65 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-hhccccHHHHHHHHHHHH
Confidence 444567777778888888888877777764421 222334444555544444
No 57
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=43.80 E-value=2.6e+02 Score=32.55 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=9.3
Q ss_pred hhhhhhhhhHHHHHHHh
Q 002856 199 PEQVNDVKDLLEDYVER 215 (873)
Q Consensus 199 pe~V~~ikddieyYve~ 215 (873)
-++++.++..|+..-+.
T Consensus 566 ~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35555566666555443
No 58
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=43.60 E-value=14 Score=29.71 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=17.5
Q ss_pred hhhhhhhhhHHHHHHHhCCCCCC
Q 002856 199 PEQVNDVKDLLEDYVERNQDDFE 221 (873)
Q Consensus 199 pe~V~~ikddieyYve~nqddf~ 221 (873)
.+.+++|-|+|+..||.|.++|+
T Consensus 13 ~~~~D~lLDeId~vLE~NAeeFV 35 (44)
T 3m91_B 13 TEETDDLLDEIDDVLEENAEDFV 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHHTC----
T ss_pred hhhHHHHHHHHHHHHHHhHHHHH
Confidence 56889999999999999999775
No 59
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=43.18 E-value=2.5e+02 Score=32.97 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=17.2
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhh
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVY 33 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~ 33 (873)
.|+.+|.+.-+.+.++.+.-+.+..|+.
T Consensus 493 ~l~~~~~~~~~~l~~A~~sD~~v~~~~~ 520 (704)
T 2xs1_A 493 PLRAEGTNFRTVLDKAVQADGQVKECYQ 520 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4566666666666666666666666654
No 60
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.12 E-value=24 Score=34.75 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 78 ASYEQALVDARKLIEREMERFKICEKE 104 (873)
Q Consensus 78 ~~~~~~L~e~Rk~IE~~MErFK~vEKe 104 (873)
+.+++.|...|+-|+..=.|-+.+|+.
T Consensus 16 s~LeD~L~~~R~el~~~~~ri~~lE~~ 42 (154)
T 2ocy_A 16 SHLEEQLNKSLKTIASQKAAIENYNQL 42 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777655555555543
No 61
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=43.02 E-value=60 Score=29.65 Aligned_cols=64 Identities=14% Similarity=0.342 Sum_probs=32.8
Q ss_pred cchhhhHHHHhhhH------HHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002856 5 RKLQGEIDRVLKKV------QEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (873)
Q Consensus 5 RKLQ~EIDr~lKKV------~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (873)
+|||+.|+++-+.| .|||+---.+|.+=-.-.++..-|..=.++.+.|.+|+--+-.+..|++-
T Consensus 18 kkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444 35655555555543333333322444455566666666656666666643
No 62
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=42.16 E-value=47 Score=31.58 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=28.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
|+...||.+||+.-|+.|+.+++.++.+++.+
T Consensus 93 E~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l 124 (151)
T 2zdi_C 93 ERSIDEAISFLEKRLKEYDEAIKKTQGALAEL 124 (151)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999999887665
No 63
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=40.58 E-value=15 Score=30.14 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhHHHHHHhhcc
Q 002856 47 DLKKEIKKLQRYRDQIKTWIQS 68 (873)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s 68 (873)
-|.|||.+|||.|++=-.-+..
T Consensus 10 RLErEIE~Lqrqke~~~~~L~e 31 (51)
T 2lw9_A 10 RLEKEIEDLQRMKEQQELSLTE 31 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 4889999999999987665554
No 64
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.51 E-value=29 Score=40.06 Aligned_cols=61 Identities=11% Similarity=0.017 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCC---CCCccCCccccccCC
Q 002856 167 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD---DFEEFSDVDELYHLL 233 (873)
Q Consensus 167 r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~nqd---df~ef~dde~iYd~L 233 (873)
|++.|+..|+.+.-+|..|+.+|+-+ ..+|..|.=||+.=|+.... -..+|.-|-.-|+++
T Consensus 118 rIqyLKekVdnQlsnIrvLQsnLedq------~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~ 181 (562)
T 3ghg_A 118 RIEVLKRKVIEKVQHIQLLQKNVRAQ------LVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQ 181 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhccccccchheeecchHHHHHH
Confidence 56777888888888888888888844 45677778888888886643 123454455556654
No 65
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.25 E-value=33 Score=32.11 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 002856 138 LVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 138 ~IdeL~~QiE~~EaE~E~Ls 157 (873)
-|.+|+++|..+++|++++.
T Consensus 37 Ei~elrr~iq~L~~el~~l~ 56 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVK 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47888889999999998883
No 66
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=39.74 E-value=51 Score=30.80 Aligned_cols=126 Identities=13% Similarity=0.216 Sum_probs=68.1
Q ss_pred hHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHH
Q 002856 17 KVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREME 96 (873)
Q Consensus 17 KV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~ME 96 (873)
+|.+=++.....|+++... ...-|.|||.-|+ +.+.++-=+.+..||..-+--- ....|.+ -..|+..+.
T Consensus 16 ~I~~r~~~l~~r~~~L~~~-a~~R~~~Le~s~~--l~~F~~d~~el~~Wi~ek~~~~--~~~~~~d-----~~~v~~~l~ 85 (149)
T 3f31_A 16 DIQERRQQVLDRYHRFKEL-STLRRQKLEDSYR--FQFFQRDAEELEKWIQEKLQIA--SDENYKD-----PTNLQGKLQ 85 (149)
T ss_dssp HHHHHHHHHHHHTCSCHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHT--TSCSSCS-----SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--cCcccCC-----HHHHHHHHH
Confidence 4445555555556555433 1233788888883 6777777788999987632110 0011110 023566777
Q ss_pred HHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002856 97 RFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELE 154 (873)
Q Consensus 97 rFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E 154 (873)
+++++|.|.....-+=+.+.... .-.-.......+.|...+++|+.+=+.|....+
T Consensus 86 kH~afe~El~a~~~~l~~v~~~g--~~Li~~~~~~~~~I~~rl~~l~~~W~~L~~~~~ 141 (149)
T 3f31_A 86 KHQAFEAEVQANSGAIVKLDETG--NLMISEGHFASETIRTRLMELHRQWELLLEKMR 141 (149)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHH--HHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888775443333332100 000011222456777777777777776666554
No 67
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=39.36 E-value=1.6e+02 Score=30.65 Aligned_cols=12 Identities=8% Similarity=-0.019 Sum_probs=7.7
Q ss_pred hhhhhHHHHHHH
Q 002856 203 NDVKDLLEDYVE 214 (873)
Q Consensus 203 ~~ikddieyYve 214 (873)
.||+..|+.|--
T Consensus 279 ~Di~~fi~~~~t 290 (337)
T 2x3v_A 279 EDLRWFRSTSGP 290 (337)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHhCC
Confidence 566777777743
No 68
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=39.28 E-value=2.6e+02 Score=28.59 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccc--cccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002856 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSS--EIKDKKVSASYEQALVDARKLIEREMERFK 99 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~--eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK 99 (873)
+++|.-+...--.+|..+.+.++.=+..+ |+|.+ ++.-+.|.|..++..||.++
T Consensus 61 ~~~l~p~~ee~~~~l~~~~~~lr~~l~kd~ee~r~~-----l~Py~~el~~~~~~~~eelr 116 (243)
T 2a01_A 61 REQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAK-----VQPYLDDFQKKWQEEMELYR 116 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSSTT-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHH
Confidence 44554444444445555555555544332 45543 34456667777888888776
No 69
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=39.25 E-value=36 Score=35.09 Aligned_cols=49 Identities=31% Similarity=0.302 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 002856 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD-KKVSASYEQALVDARKLIEREMERFKICEKETKTKA 109 (873)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKD-K~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKa 109 (873)
+|=++=+.+||+.|+|+. .+.|.. |. ..+-.|.-| ++.| ...|+.|||.
T Consensus 194 ~~g~~~~~~E~~Rl~~~l--------~~~~~~~k~-------d~~~~r~NI---L~~F-~~~~~~~~~~ 243 (248)
T 2c0g_A 194 EVGYDFLEEETKRLLRLK--------AGKVTEAKK-------EELLRKLNI---LEVF-RVHKVTKTAP 243 (248)
T ss_dssp HHCTHHHHHHHHHHHHHH--------TSSCCHHHH-------HHHHHHHHH---HHHT-CCSSCCSCC-
T ss_pred hhhhHHHHHHHHHHHHHH--------hcCCCHHHH-------HHHHHHHHH---HHHH-HhccCccccc
Confidence 344556899999999987 224442 22 344455555 7788 3667777664
No 70
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=38.74 E-value=4e+02 Score=28.64 Aligned_cols=125 Identities=14% Similarity=0.163 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHH-------H---HHHHHHHHHHhhhccccccccccC
Q 002856 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLI-------E---REMERFKICEKETKTKAFSKEGLG 116 (873)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~I-------E---~~MErFK~vEKe~KtKafSkEGL~ 116 (873)
.|.+-+.+|=..=+.|......---.|- ..+...|.+|+.+| . ..+.+++++||..
T Consensus 230 ~L~~al~~l~~~~~~i~~l~~~qa~~d~---~~l~E~L~~Y~~~l~avKd~l~~r~~aL~k~~e~~kl~----------- 295 (366)
T 3dyt_A 230 DLNDAITEAGKTYEEIASLVAEQPKKDL---HFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLV----------- 295 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSGGGTH---HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 4566666555544444444332211110 12334666666654 2 2556667776522
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002856 117 QQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAE-LEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (873)
Q Consensus 117 ~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE-~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N 194 (873)
...|.+.. +..+++.=...+...+...++.|+.+ +.-+ +..=++-++..|+-++-.+..||.+|..+++
T Consensus 296 ~~~K~~~~--~~~~~~~r~e~is~~~~~El~rF~~~r~~Df-------k~~l~~yl~~qi~~~k~~~~~w~~~l~~~~~ 365 (366)
T 3dyt_A 296 ATSKITLQ--DKQNMVKRVSIMSYALQAEMNHFHSNRIYDY-------NSVIRLYLEQQVQFYETIAEKLRQALSRFPV 365 (366)
T ss_dssp HTTSSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred hccCcchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22233322 22334433445555566666666655 1111 1112345666778889999999999988764
No 71
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=38.41 E-value=1.8e+02 Score=34.19 Aligned_cols=43 Identities=9% Similarity=0.359 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCCCc---------hhHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Q 002856 23 DVFDSIWNKVYDTDNA---------NQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (873)
Q Consensus 23 e~Fd~i~~K~~~a~n~---------nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~ 69 (873)
+.....|+++..+... ..++|||. .+.+++|--+.+.+|+...
T Consensus 338 ~~i~~~w~~L~~~~~~r~~~l~~~~~R~~~Le~----l~~~F~~~~~~~~~Wl~~~ 389 (863)
T 1sjj_A 338 SDINNAWGGLEQAEKGYEEWLLNEIRRLERLDH----LAEKFRQKASIHESWTDGK 389 (863)
T ss_dssp GGHHHHHHHHHHHHTTTHHHHHHHHEEHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4456667777655431 34667774 3467777778899998654
No 72
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=38.36 E-value=49 Score=29.63 Aligned_cols=20 Identities=40% Similarity=0.544 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhHHHHHHhh
Q 002856 47 DLKKEIKKLQRYRDQIKTWI 66 (873)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~ 66 (873)
+||||||||+|.=-|.|.=+
T Consensus 19 eLkkevkKL~~~A~q~kmdL 38 (81)
T 3csx_A 19 DLKKKVRKLNSKAGQMKMDL 38 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999988888633
No 73
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=37.94 E-value=1.3e+02 Score=28.80 Aligned_cols=51 Identities=22% Similarity=0.388 Sum_probs=32.2
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcccc
Q 002856 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSE 70 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~e 70 (873)
+|...+..|.+.-+.|...|++. +++|+.-| ++.+..|-=+++..|+..-+
T Consensus 80 ~i~~~l~~L~~~w~~L~~~w~~r--------~~~L~~~l--~l~~F~~d~~~~~~Wl~~~e 130 (185)
T 3lbx_B 80 EIREKLQQVMSRRKEMNEKWEAR--------WERLRMLL--EVCQFSRDASVAEAWLIAQE 130 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH--HHHHHHHhHHHHHHHHHHhH
Confidence 45555555555555666555543 67777666 34455666678889987643
No 74
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=37.42 E-value=2.5e+02 Score=30.05 Aligned_cols=184 Identities=15% Similarity=0.188 Sum_probs=85.4
Q ss_pred HHhHHHHHHHHHHhhcCCCchhHH----HHHHHHHHHH----HHHHHhHHHHHHhhccc--cccccccchhhHHHHHHHH
Q 002856 19 QEGVDVFDSIWNKVYDTDNANQKE----KFEADLKKEI----KKLQRYRDQIKTWIQSS--EIKDKKVSASYEQALVDAR 88 (873)
Q Consensus 19 ~EGve~Fd~i~~K~~~a~n~nQKE----KlE~DLKKEI----KKLQR~RDQIKtW~~s~--eIKDK~~~~~~~~~L~e~R 88 (873)
..-.+.|.++++.+......-++. +|..+|+.-| +-|+-+++.++.=+..- |+ .+-+..-..+.|
T Consensus 35 e~v~~~fwdY~~~~~~~a~~~~eql~~s~l~kel~~l~~~~~~el~~y~~~l~~qL~P~~~e~-----~~~l~~~~~~Lr 109 (307)
T 2l7b_A 35 ELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEET-----RARLSKELQAAQ 109 (307)
T ss_dssp HHHHHHHHHHHHHTCCCSTHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCSST-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-----HHHHHHhHHHHH
Confidence 345678888888887766555432 3333332211 11222222233222211 11 112233445566
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhh
Q 002856 89 KLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRL 168 (873)
Q Consensus 89 k~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~ 168 (873)
..|...||.+|. |..+|..+=-.. -..+ .+.-|....-|..+.-+.++..+|.+...+.....+=+++=..++
T Consensus 110 ~~L~~dlEelR~-----~L~Py~~el~~~-l~~~-~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py~eeLr~kl~~~v 182 (307)
T 2l7b_A 110 ARLGADMEDVCG-----RLVQYRGEVQAM-LGQS-TEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGL 182 (307)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHH-SSCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777776654 333443221100 0011 244455555666666666666666666666555322222223456
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHhhhCCCCC---hhhhhhhhhHHHHHHHhCCC
Q 002856 169 THLETSI----TRHKAHIMKLELILRLLDNDELS---PEQVNDVKDLLEDYVERNQD 218 (873)
Q Consensus 169 ~~le~~i----erhk~Hi~kLE~lLRlL~N~~l~---pe~V~~ikddieyYve~nqd 218 (873)
++|+..+ +..+--+.+++ .+.-+.|. ..-+++|++.|+.|.+.-++
T Consensus 183 eelr~~L~Py~e~~~~~~~~v~----~~k~~~L~~ki~~~~e~Lr~~L~p~~~~~~~ 235 (307)
T 2l7b_A 183 SAIRERLGPLVEQGRVRAATVG----SLAGQPLQERAQAWGERLRARMEEMGSRTRD 235 (307)
T ss_dssp HHHHHHCSSSCTTTTTHHHHHH----HHHCCCCSSCSCCHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHhhhHHHHHHHHHhhhh----hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6666655 21111111222 22223332 23367777777777775443
No 75
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=37.19 E-value=3.4e+02 Score=27.40 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=13.4
Q ss_pred HHHHHHHHhhcCCC--chhHHHHHHHHHHH
Q 002856 24 VFDSIWNKVYDTDN--ANQKEKFEADLKKE 51 (873)
Q Consensus 24 ~Fd~i~~K~~~a~n--~nQKEKlE~DLKKE 51 (873)
.|...|..+..... +.++..+-..|..+
T Consensus 66 t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~ 95 (301)
T 2efk_A 66 SQQQSFVQILQEVNDFAGQRELVAENLSVR 95 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666654332 23444444444333
No 76
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=36.59 E-value=76 Score=32.20 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccC--CCC--------chhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CChh
Q 002856 132 RDWLNNLVSELESQIDSFEAELEGLTVKKG--KTR--------PPRLTHLETSITRHKAHIMKLELILRLLDNDE-LSPE 200 (873)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~--K~~--------~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~-l~pe 200 (873)
..=+..-+..|..++..+..|++.+..|=. +.. +..+..|....+..+.+|..||..-.-|++.. +...
T Consensus 51 L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~ 130 (189)
T 2v71_A 51 LVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIM 130 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 334445666677777777777766633211 000 23456677777888888888888777776654 4566
Q ss_pred hhhhhhhHHHHHHHhC
Q 002856 201 QVNDVKDLLEDYVERN 216 (873)
Q Consensus 201 ~V~~ikddieyYve~n 216 (873)
.+.|+...++.-||.|
T Consensus 131 SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 131 SLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6777777777666665
No 77
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=36.41 E-value=2.3e+02 Score=31.69 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002856 168 LTHLETSITRHKAHIMKLELILRLLDN 194 (873)
Q Consensus 168 ~~~le~~ierhk~Hi~kLE~lLRlL~N 194 (873)
|..|+..++.++-.|..|+..+..|.+
T Consensus 107 i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 107 IQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444444
No 78
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=36.20 E-value=1e+02 Score=24.82 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHH
Q 002856 135 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY 212 (873)
Q Consensus 135 L~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyY 212 (873)
|.+.+..|++.++.++.++..+ ..+++....+++-+...|+.+. +.|..++..|+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~k~~~~~~~~~l~~~~----------~~I~~~k~qi~~y 59 (60)
T 3htk_A 3 FANTKKTLENQVEELTEKCSLK-----------TDEFLKAKEKINEIFEKLNTIR----------DEVIKKKNQNEYY 59 (60)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhc
No 79
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=36.03 E-value=4.3e+02 Score=28.17 Aligned_cols=16 Identities=6% Similarity=0.389 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHHHH
Q 002856 506 APDQREKFLQRLQQVQ 521 (873)
Q Consensus 506 ~~dq~ek~lq~~qqv~ 521 (873)
+++.++..+..++.|-
T Consensus 359 s~~e~~~Wi~ai~~~~ 374 (385)
T 2q13_A 359 SKKDHEEWICTINNIS 374 (385)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3567889999998873
No 80
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.03 E-value=26 Score=32.99 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 002856 138 LVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 138 ~IdeL~~QiE~~EaE~E~Ls 157 (873)
-|.+|+++|..+++|++++.
T Consensus 39 Ei~elrr~iq~L~~el~~l~ 58 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQL 58 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888873
No 81
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=35.99 E-value=1.8e+02 Score=29.39 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002856 132 RDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 195 (873)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~ 195 (873)
.+..-.+++.|+.++|.+|.++-. ... ..-.++-.|+..+-+.+..+.-+..+|..|.++
T Consensus 182 vd~y~~~l~~i~~~id~lE~~l~~---~~~-~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~ 241 (266)
T 2hn1_A 182 VDSYFEALLKISDEIEVLEDEVVS---GDS-TLIGKIHSLKREILAFRNAVWPLRDVLSFFTRV 241 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---TTC-CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---CcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555666666666655421 122 334689999998888888888887777666543
No 82
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=35.89 E-value=29 Score=32.21 Aligned_cols=35 Identities=37% Similarity=0.613 Sum_probs=28.7
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHH
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKF 44 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKl 44 (873)
||+ .|=|..||.|+|-|..|.++|.++ ..+|||.+
T Consensus 66 ~kv-~en~~~L~QIQ~ei~s~rd~hkR~----~E~QkEQ~ 100 (115)
T 1ezj_A 66 RKV-DENKQLLKQIQESVESFRDIYKRF----SEYQKEQN 100 (115)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred hhh-hhhHHHHHHHHHHHHHHHHHHHHH----HHhHHHHH
Confidence 444 367889999999999999999999 45788764
No 83
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=35.60 E-value=67 Score=31.50 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=53.2
Q ss_pred CCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc------ccCCCCchh--------hHHHHHHHHHHHHHHHHH
Q 002856 120 KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV------KKGKTRPPR--------LTHLETSITRHKAHIMKL 185 (873)
Q Consensus 120 k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~------KK~K~~~~r--------~~~le~~ierhk~Hi~kL 185 (873)
+.||+|.- .++..=|+..+.+|.+++..+|.+-.++.. |+|.....| +-.....+-+.+.||..+
T Consensus 5 ~~~p~e~l-r~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v 83 (179)
T 2gd5_A 5 EKPPKELV-NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSV 83 (179)
T ss_dssp ---CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34675543 556667888999999999999988777632 233221111 111111222233444433
Q ss_pred HH----HHH---hhh------------CCCCChhhhhhhhhHHHHHHHhC
Q 002856 186 EL----ILR---LLD------------NDELSPEQVNDVKDLLEDYVERN 216 (873)
Q Consensus 186 E~----lLR---lL~------------N~~l~pe~V~~ikddieyYve~n 216 (873)
+. +.. +.+ |..++.++|..+-++++.=++.-
T Consensus 84 ~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~ 133 (179)
T 2gd5_A 84 LMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKA 133 (179)
T ss_dssp HHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 33 222 221 67888899998888887766644
No 84
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=35.11 E-value=1.8e+02 Score=28.16 Aligned_cols=79 Identities=20% Similarity=0.263 Sum_probs=53.5
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC-CchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 002856 119 PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKT-RPPRLTHLETSITRHKAHIMKLELILRLLDNDEL 197 (873)
Q Consensus 119 ~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~-~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l 197 (873)
.|.+|.+.+.-.-..=+...|+.+.++++.++.|+..|. ||=- ++-+.+.+...-.|.+.|.+.|-.+|..||.=.|
T Consensus 10 kK~~peee~~lKkL~dveksv~~~~k~l~~l~~el~~ie--kGFL~k~l~~ea~~kl~Krik~~~E~~Mk~LE~LDs~~i 87 (135)
T 1i6z_A 10 EKSNPEEEVELKKLKDLEVSAEKIANHLQELNKELSGIQ--QGFLAKELQAEALCKLDRKVKATIEQFMKILEEIDTMVL 87 (135)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 467887544433333445558999999999999999884 4422 2234455555557788888888888888887777
Q ss_pred Ch
Q 002856 198 SP 199 (873)
Q Consensus 198 ~p 199 (873)
.+
T Consensus 88 p~ 89 (135)
T 1i6z_A 88 PE 89 (135)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 85
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=35.02 E-value=3.7e+02 Score=27.20 Aligned_cols=140 Identities=15% Similarity=0.203 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 002856 22 VDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKIC 101 (873)
Q Consensus 22 ve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~v 101 (873)
++..+..|+.+.... ..-|.|||.-|+ +.++.+-=+.+..|+..-+-.=.. ..+...+ .-++...++|+.+
T Consensus 85 l~~l~~~w~~L~~~~-~~R~~~Le~~l~--l~~f~~~~~~l~~Wl~~~e~~l~~--~~~g~d~----~~v~~l~~~~~~f 155 (326)
T 3kbt_A 85 QGQVDKHYAGLKDVA-EERKRKLENMYH--LFQLKRETDDLEQWISEKELVASS--PEMGQDF----DHVTLLRDKFRDF 155 (326)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHC--CCCCSSH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcc--ccCCCCH----HHHHHHHHHHHHH
Confidence 344555555554331 223566666552 345555556788887654321000 0001111 2345556667777
Q ss_pred Hhhhcc-ccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHH
Q 002856 102 EKETKT-KAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKA 180 (873)
Q Consensus 102 EKe~Kt-KafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~ 180 (873)
+++++. +.-.=+.|.... +..-....-....|...+++|+..-+.+..-++ .|...|+...+.|+|
T Consensus 156 ~~el~~~~~~~v~~l~~~~--~~L~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~-----------~r~~~L~~a~~~~~f 222 (326)
T 3kbt_A 156 ARETGAIGQERVDNVNAFI--ERLIDAGHSEAATIAEWKDGLNEMWADLLELID-----------TRMQLLAASYDLHRY 222 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHH--HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 666543 211111111000 000000000122355555566555555554433 244566666677777
Q ss_pred HHH
Q 002856 181 HIM 183 (873)
Q Consensus 181 Hi~ 183 (873)
|..
T Consensus 223 ~~~ 225 (326)
T 3kbt_A 223 FYT 225 (326)
T ss_dssp HHH
T ss_pred HHH
Confidence 744
No 86
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=34.56 E-value=1.6e+02 Score=32.09 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=5.8
Q ss_pred HHHHHHHhhhcc
Q 002856 96 ERFKICEKETKT 107 (873)
Q Consensus 96 ErFK~vEKe~Kt 107 (873)
+.|-.+|+..-|
T Consensus 411 ~~~~~~~~~~~~ 422 (471)
T 3mq9_A 411 KGFQDVEAQAAT 422 (471)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHhhh
Confidence 345555554443
No 87
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=34.50 E-value=30 Score=38.15 Aligned_cols=37 Identities=32% Similarity=0.706 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHH-----------------HHHHHHHhHHHHHHhhccccccccc
Q 002856 39 NQKEKFEADLKK-----------------EIKKLQRYRDQIKTWIQSSEIKDKK 75 (873)
Q Consensus 39 nQKEKlE~DLKK-----------------EIKKLQR~RDQIKtW~~s~eIKDK~ 75 (873)
..|+|||.+|+. ||=.|.|.|||...|+...-+++++
T Consensus 219 ~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~g~~~~~ 272 (373)
T 3hhm_B 219 DSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKK 272 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 347788888876 4555899999999999999888765
No 88
>2d4u_A Methyl-accepting chemotaxis protein I; helix-turn-helix, signaling protein; 1.95A {Escherichia coli} PDB: 3atp_A
Probab=34.46 E-value=2.1e+02 Score=26.00 Aligned_cols=61 Identities=5% Similarity=0.150 Sum_probs=35.4
Q ss_pred hHHHHhhhHHHhHHHHHHHHHHhhcCCCchh-HHHHHHHHHHHHHHHHHhHHHHHHhhcccc
Q 002856 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ-KEKFEADLKKEIKKLQRYRDQIKTWIQSSE 70 (873)
Q Consensus 10 EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQ-KEKlE~DLKKEIKKLQR~RDQIKtW~~s~e 70 (873)
+++..++++.+-+...+..|+++........ -.++-.+|++-.+.+..-.+.+-..+..++
T Consensus 66 ~~~~~~~~a~~~l~~~~~~~~~y~~~~~~~~~e~~l~~~l~~~~~~~~~~l~~~~~~l~~g~ 127 (176)
T 2d4u_A 66 TVAELMESASISLKQAEKNWADYEALPRDPRQSTAAAAEIKRNYDIYHNALAELIQLLGAGK 127 (176)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3778888888888888999988887754332 223334444444433333333333444444
No 89
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=34.00 E-value=25 Score=36.92 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=72.9
Q ss_pred HHHHHH-HHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCch
Q 002856 46 ADLKKE-IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPK 124 (873)
Q Consensus 46 ~DLKKE-IKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ 124 (873)
+|||-| ||.|.|.|-.++.|..+.+|-.. .|......|+.....- ....|..-.
T Consensus 58 ~dlK~eLlKeLERq~~~L~~~~~~P~Vd~~--------~l~~~l~~l~~~~~~L-----------------~~~~r~Gq~ 112 (247)
T 2oez_A 58 IQLKSELAKDLEKQRLSYRHWLNVEGVDQE--------ALNSLLNEIDVVHSQL-----------------MGAERFGQA 112 (247)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTTCTTSCHH--------HHHHHHHHHHHHHHHH-----------------HHCCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCHH--------HHHHHHHHHHHHHHHH-----------------HhcCcccch
Confidence 478876 58899999999999999998643 6888888888776653 222222111
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 002856 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (873)
Q Consensus 125 ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~ 196 (873)
=+ --+||..+=..+.--=-..+-++=.+..=-.+....|.++++.+++-..-=..-|.+|||+|.+-.
T Consensus 113 Lr----ede~L~~iRQR~~iPGG~C~FDLP~yh~Wl~~p~~~R~~dl~~W~~~l~pl~~al~liL~LlR~s~ 180 (247)
T 2oez_A 113 LK----EDRFLSSIRQRFNLPGGSCCFDLPALHYWLHLPIERKKHDANQWQKSLKPLSDALTLWLKLARETG 180 (247)
T ss_dssp HH----HCHHHHHHHHHHHC----CGGGCHHHHHHHTSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC
T ss_pred hh----HhHHHHHHHhhhcCCCccCCcCcHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11 123554332222111122233333332112222346888899999888888888999999986543
No 90
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=33.92 E-value=6.4e+02 Score=29.63 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhh--hCCCCChhhhhhhhhHHHHHH
Q 002856 174 SITRHKAHIMKLELILRLL--DNDELSPEQVNDVKDLLEDYV 213 (873)
Q Consensus 174 ~ierhk~Hi~kLE~lLRlL--~N~~l~pe~V~~ikddieyYv 213 (873)
.+-..+-+|.+||.+.+.+ ++|-+ ++.+..+.+.|...+
T Consensus 147 ~l~q~rqql~~l~~l~~k~~~~~dpi-~~~~~~l~~~~~~ll 187 (596)
T 1bg1_A 147 SQLQTRQQIKKLEELQQKVSYKGDPI-VQHRPMLEERIVELF 187 (596)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCTT-TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcc-ccchHHHHHHHHHHH
Confidence 3444556677777776654 23333 344444444444433
No 91
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.86 E-value=2.9e+02 Score=25.53 Aligned_cols=72 Identities=21% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchH
Q 002856 46 ADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKE 125 (873)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~e 125 (873)
..||++|+.|.|=|+ .|.+-....|-++|+ ...+...||..
T Consensus 15 ~~lr~ei~~Le~E~~----------------------rLr~~~~~LE~~Le~-----------------~~l~Gd~~~~~ 55 (100)
T 1go4_E 15 DTLRLKVEELEGERS----------------------RLEEEKRMLEAQLER-----------------RALQGDYDQSR 55 (100)
T ss_dssp HHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHH-----------------SSCCSCCCTTT
T ss_pred HHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHH-----------------HhhccccCCcc
Q ss_pred --------HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 126 --------KAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 126 --------kek~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
-...++.+=..+.|+.|+..+|.+..-+-.|
T Consensus 56 TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 56 TKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 92
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=33.58 E-value=86 Score=34.27 Aligned_cols=55 Identities=11% Similarity=0.210 Sum_probs=31.1
Q ss_pred cchhhhHHHHh-hhHHHhHHHHHHHHHHhhcC-------CCchhHHHHHHHHHHHHHHHHHhH
Q 002856 5 RKLQGEIDRVL-KKVQEGVDVFDSIWNKVYDT-------DNANQKEKFEADLKKEIKKLQRYR 59 (873)
Q Consensus 5 RKLQ~EIDr~l-KKV~EGve~Fd~i~~K~~~a-------~n~nQKEKlE~DLKKEIKKLQR~R 59 (873)
+|||+++.+++ +.|.---..|+..+..+..+ ......||...-++|-..++.+.|
T Consensus 122 ~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k~ke~eK~~~k~~k~~~~~~~a~ 184 (406)
T 4dyl_A 122 QQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLWKLFAHH 184 (406)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH
Confidence 56788888888 67777666777665544432 212223566666655555555544
No 93
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=33.38 E-value=6.5e+02 Score=29.49 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=35.3
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcC---------CCchhHHHHHHHHHHHHHH
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDT---------DNANQKEKFEADLKKEIKK 54 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a---------~n~nQKEKlE~DLKKEIKK 54 (873)
+.=++++.-+|++.+--|.|+--|..+... .+.+||...|..|+++.+.
T Consensus 26 ~~~q~~e~~~k~Le~~Qe~F~~~y~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 83 (585)
T 1y1u_A 26 LITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETALQQKQVS 83 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTTSCCSSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHhhhccccchhhhhHHHHHHHHHHH
Confidence 334688899999999999999888766632 1245677778887777554
No 94
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=33.35 E-value=2.3e+02 Score=28.59 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=10.9
Q ss_pred hhhhhHHHHHHHhCC
Q 002856 203 NDVKDLLEDYVERNQ 217 (873)
Q Consensus 203 ~~ikddieyYve~nq 217 (873)
.||+..|+.|--...
T Consensus 268 ~D~~~fi~~~~tg~~ 282 (305)
T 2efl_A 268 NDSQLVIEAYKSGFE 282 (305)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred hhHHHHHHHcCCCCC
Confidence 678888888875444
No 95
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.57 E-value=35 Score=30.73 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHh
Q 002856 40 QKEKFEADLKKEIKKLQRYRDQIKTW 65 (873)
Q Consensus 40 QKEKlE~DLKKEIKKLQR~RDQIKtW 65 (873)
-|+|++.+|++-++.|.++.++|..+
T Consensus 45 LKkkl~~el~~h~~ei~~le~~i~rh 70 (84)
T 1gmj_A 45 LKKHKENEISHHAKEIERLQKEIERH 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777777766554
No 96
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=32.45 E-value=80 Score=26.13 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 002856 139 VSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLEL 187 (873)
Q Consensus 139 IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~ 187 (873)
-|+|-+|+|.+..|- .+|+.-++.+-.|+.|||.
T Consensus 5 YdQL~~QVe~Lk~EN---------------shLrrEL~dNS~~lskLE~ 38 (54)
T 1deb_A 5 YDQLLKQVEALKMEN---------------SNLRQELEDNSNHLTKLET 38 (54)
T ss_dssp HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---------------hHHHHHHHhhHHHHHHHHh
Confidence 478888998888773 4677788889999999986
No 97
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=32.45 E-value=2.9e+02 Score=30.33 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=35.5
Q ss_pred chHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 002856 123 PKEKAK-SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLEL 187 (873)
Q Consensus 123 p~ekek-~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~ 187 (873)
|.|..+ .+-.+.|+.-|.+|+..-+.+|.+++... ...-+|+..|...|=.+..|-.
T Consensus 197 ~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 197 EKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQA--------AEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhccChHHHHHHH
Confidence 345444 45677888899999988888888876531 1122455555555555544444
No 98
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=32.44 E-value=81 Score=33.34 Aligned_cols=13 Identities=8% Similarity=-0.020 Sum_probs=10.7
Q ss_pred hhHHHHHHHhCCC
Q 002856 206 KDLLEDYVERNQD 218 (873)
Q Consensus 206 kddieyYve~nqd 218 (873)
..||..||+++..
T Consensus 287 ~~Di~~fi~~~~t 299 (350)
T 3aco_A 287 VEDLRWFRANHGP 299 (350)
T ss_dssp HHHHHHHHHHTST
T ss_pred HHHHHHHHHHcCC
Confidence 4789999998875
No 99
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=32.43 E-value=2.1e+02 Score=24.13 Aligned_cols=25 Identities=12% Similarity=0.348 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002856 128 KSETRDWLNNLVSELESQIDSFEAE 152 (873)
Q Consensus 128 k~E~~~wL~~~IdeL~~QiE~~EaE 152 (873)
|.|+..|.+.-+++|+.++.....+
T Consensus 26 r~EaE~~y~~k~eel~~~~~~~~~~ 50 (77)
T 3trt_A 26 LQEAEEWYKSKFADLSEAANRNNDA 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444445544444444444444433
No 100
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=31.98 E-value=3.4e+02 Score=29.94 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLT 157 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls 157 (873)
..+-+..-|.+|+.+++.+|.++..|-
T Consensus 70 ~~~~a~~e~~~l~~~~~~le~~l~~lL 96 (354)
T 3d5a_X 70 LKEMAKAEREALLARKEALEKELERHL 96 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455667788888888888877653
No 101
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.62 E-value=1.3e+02 Score=26.50 Aligned_cols=55 Identities=15% Similarity=0.280 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhHHHHHHhhccccc--cccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002856 48 LKKEIKKLQRYRDQIKTWIQSSEI--KDKKVSASYEQALVDARKLIEREMERFKICE 102 (873)
Q Consensus 48 LKKEIKKLQR~RDQIKtW~~s~eI--KDK~~~~~~~~~L~e~Rk~IE~~MErFK~vE 102 (873)
|-++|-+|..-...|-.=|+..++ .|....+.+-..|.+....+|..|||+=.+|
T Consensus 27 le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555566666665 3433233444577788899999999997776
No 102
>2lig_A Aspartate receptor; chemotaxis; HET: PHN; 2.00A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1lih_A*
Probab=31.52 E-value=2.4e+02 Score=24.57 Aligned_cols=17 Identities=0% Similarity=0.075 Sum_probs=6.4
Q ss_pred hhHHHhHHHHHHHHHHh
Q 002856 16 KKVQEGVDVFDSIWNKV 32 (873)
Q Consensus 16 KKV~EGve~Fd~i~~K~ 32 (873)
+++.+-+..++..|+++
T Consensus 67 ~~~~~~~~~~~~~~~~~ 83 (164)
T 2lig_A 67 QNAKTTLAQAAAHYANF 83 (164)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 103
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=31.40 E-value=75 Score=35.47 Aligned_cols=42 Identities=7% Similarity=0.184 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 002856 23 DVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (873)
Q Consensus 23 e~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~ 66 (873)
..|...|.++... -.|+.++..+.+.-.+.|..++.|+..+.
T Consensus 179 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~~l~~ql~ei~ 220 (517)
T 4ad8_A 179 QAYAAAHAAWREA--VSRLERLQASQRERARQIDLLAFQVQEIS 220 (517)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5556666555332 12344444444433444555555555443
No 104
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=31.12 E-value=2.6e+02 Score=24.26 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHH---H---------HHHHHHHHHHHHHHHhhhCCCC-
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETS---I---------TRHKAHIMKLELILRLLDNDEL- 197 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~---i---------erhk~Hi~kLE~lLRlL~N~~l- 197 (873)
..+.+..++++....++.++.-+..|.. ......-+..+... | .+-......||.++..+.++.+
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~--~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~ 80 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEK--NPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIK 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3567888888888888888888877632 11122222222221 1 3345567789999999988886
Q ss_pred -ChhhhhhhhhHHH
Q 002856 198 -SPEQVNDVKDLLE 210 (873)
Q Consensus 198 -~pe~V~~ikddie 210 (873)
+++.++.|.+-++
T Consensus 81 ~~~~~~~~l~~~~d 94 (105)
T 1tqg_A 81 ITSDLLDKIFAGVD 94 (105)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 4555555544443
No 105
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=30.71 E-value=2e+02 Score=25.92 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 002856 168 LTHLETSITRHKAHIMKLEL 187 (873)
Q Consensus 168 ~~~le~~ierhk~Hi~kLE~ 187 (873)
|++|+..|+||+--|.+|+.
T Consensus 60 i~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 60 IERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 45566667777666666654
No 106
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=30.67 E-value=83 Score=29.74 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhHHHHHHhh
Q 002856 46 ADLKKEIKKLQRYRDQIKTWI 66 (873)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~ 66 (873)
.+|.++|+.||+.++.|...+
T Consensus 91 ~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 91 IELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777665544
No 107
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=30.39 E-value=1.5e+02 Score=26.79 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=33.6
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHH
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNA--NQKEKFEADLKKEIKKLQR 57 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~--nQKEKlE~DLKKEIKKLQR 57 (873)
...+||..++.-+.|-|+.++.--.=++..+.. ..|.++=++|+++|++|+.
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~ 89 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKL 89 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777776666555544433111 1488888888888887764
No 108
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=29.86 E-value=3.5e+02 Score=25.47 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 132 RDWLNNLVSELESQIDSFEAELEG 155 (873)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaE~E~ 155 (873)
++=+..-+++|..|++.+-.+++.
T Consensus 85 REkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHh
Confidence 333444455555555555555443
No 109
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri}
Probab=29.68 E-value=80 Score=32.68 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhh--c-cccccccccCCCCCC-CchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhh
Q 002856 93 REMERFKICEKET--K-TKAFSKEGLGQQPKT-DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRL 168 (873)
Q Consensus 93 ~~MErFK~vEKe~--K-tKafSkEGL~~~~k~-Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~ 168 (873)
.-|+-|+.+++-| + +|-|.|-|=.....+ +..--.|.+.+=-.--+||||+..|-...+.++. ..+.+
T Consensus 19 ~~~~~~~~~~~mm~~~m~kIYTktGD~G~T~L~~G~RV~Kdd~RIeayGtvDELnS~IGla~~~~~~--------~~~~~ 90 (223)
T 2nt8_A 19 SHMASMTGGQQMGRDRSVKIYTKNGDKGQTRIIGKQILYKNDPRVAAYGEVDELNSWVGYTKSLINS--------HTQVL 90 (223)
T ss_dssp ------------------CCCCCTTTTSEEECSSSCEEETTSHHHHHHHHHHHHHHHHHHHHTTCCG--------GGGGG
T ss_pred ceeeeeecchhhhHHhcccccccCCCCCeecCCCCeeccCCChhheeeehHHHHHHHHHHHHHHhcc--------ccHHH
Confidence 4589999999944 3 499999883221111 1111122222223346899999999866543210 01122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC--C----CCChhhhhhhhhHHHHHHHhC
Q 002856 169 THLETSITRHKAHIMKLELILRLLDN--D----ELSPEQVNDVKDLLEDYVERN 216 (873)
Q Consensus 169 ~~le~~ierhk~Hi~kLE~lLRlL~N--~----~l~pe~V~~ikddieyYve~n 216 (873)
.+.-..|++.-|++ =--|..-.. . .|+.++|..|.+.|+.|-+.-
T Consensus 91 ~~~L~~IQ~~Lfdl---ga~Latp~~~~~~~~~~i~~~~v~~LE~~Id~~~~~l 141 (223)
T 2nt8_A 91 SNELEEIQQLLFDC---GHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVV 141 (223)
T ss_dssp HHHHHHHHHHHHHH---HHHHTSCTTCSSCCCCCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH---HHHHcCCcccccccccCCCHHHHHHHHHHHHHHHhhC
Confidence 23223344444444 333332111 1 477899999999999887744
No 110
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=29.51 E-value=89 Score=29.64 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhHHHHHHh
Q 002856 46 ADLKKEIKKLQRYRDQIKTW 65 (873)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW 65 (873)
.+|.++|+.||+.++.|...
T Consensus 105 ~~l~~~i~~L~~~~~~L~~~ 124 (148)
T 3gpv_A 105 ANVLQLIQDTEKNLKKIQQK 124 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444433
No 111
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=29.51 E-value=2.2e+02 Score=29.98 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccc-cccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 002856 86 DARKLIEREMERFKICEKETKTKAFSK-EGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR 164 (873)
Q Consensus 86 e~Rk~IE~~MErFK~vEKe~KtKafSk-EGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~ 164 (873)
+..+.++..+.+++.+....+.-.--+ .++... +++++..++.++.++..|
T Consensus 60 ~~~~~~~~~~~k~~~~~~~L~~~~~~~~~~~~~~--------------------~~~~e~~~~~l~~~~~~l-------- 111 (357)
T 3rrk_A 60 AELKRWEAVVSQAEQSLTVVGLATVPSSKPFTGS--------------------LEEAEAVLRPVASRAEVL-------- 111 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCSSCCCSC--------------------HHHHHHHHHHHHHHHHHH--------
T ss_pred HHHhHHHHHHHHHHHHHHHhcccccccccCCcch--------------------HHHHHHHHHHHHHHHHHH--------
Q ss_pred chhhHHHHHHHHHHHHH---HHHHHHHH----HhhhCC----CC-ChhhhhhhhhHHHHHHH
Q 002856 165 PPRLTHLETSITRHKAH---IMKLELIL----RLLDND----EL-SPEQVNDVKDLLEDYVE 214 (873)
Q Consensus 165 ~~r~~~le~~ierhk~H---i~kLE~lL----RlL~N~----~l-~pe~V~~ikddieyYve 214 (873)
..|+.+|+..+++.+-+ +..|+-.. -.+-=| .| ..+.+..+++.|..+.+
T Consensus 112 ~~~~~~L~~~~~~l~~~~~~l~~L~p~~~~ld~~~~~g~~~g~ip~~~~~~~~~~~l~~~~~ 173 (357)
T 3rrk_A 112 GKERAALEEEIQTIELFGKAAEKLAALAHGLDESPRLGVIPFLVAKPEELEAVRKALQEALA 173 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTCTTEEEEEEEESCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhccCCccceeeeeeEEecChhhHHHHHHHHHHhcC
No 112
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=29.27 E-value=4.4e+02 Score=26.29 Aligned_cols=73 Identities=27% Similarity=0.282 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc-ccccccCCCCC-CCchHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 84 LVDARKLIEREMERFKICEKETKTKA-FSKEGLGQQPK-TDPKEKAK-SETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 84 L~e~Rk~IE~~MErFK~vEKe~KtKa-fSkEGL~~~~k-~Dp~ekek-~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
+.-.|..||.=-|--|.+|...+|-. ||++=+..-.+ -.|.|.++ .+-.+.|+.-+++|+..-+.++.+++..
T Consensus 47 iq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q 122 (170)
T 3l4q_C 47 LQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQ 122 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555556666666655543 55554442111 12334433 4577788888888888888888887664
No 113
>1bgc_A Granulocyte colony-stimulating factor; cytokine; 1.70A {Bos taurus} SCOP: a.26.1.1 PDB: 1rhg_A 2d9q_A* 1cd9_A* 1pgr_A 1bge_A 1bgd_A 1gnc_A
Probab=29.11 E-value=1.3e+02 Score=30.26 Aligned_cols=51 Identities=8% Similarity=0.236 Sum_probs=35.9
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH-HHhHHHHHH
Q 002856 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKT 64 (873)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKL-QR~RDQIKt 64 (873)
|.||.||..|+-+|..+.+-+++.-. +-+++++ .|..-||-| |.++.++|.
T Consensus 72 e~CL~~i~sGL~~yQ~~L~~L~~~~~-~~~~~~~-~Lq~d~~~L~~~i~q~~k~ 123 (174)
T 1bgc_A 72 RGCLNQLHGGLFLYQGLLQALAGISP-ELAPTLD-TLQLDVTDFATNIWLQMED 123 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSST-TTHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhCc-ccchHHH-HHHHHHHHHHHHHHHHHHc
Confidence 57999999999999999998876433 4455554 355555554 566666665
No 114
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=29.08 E-value=3e+02 Score=24.35 Aligned_cols=81 Identities=9% Similarity=0.224 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHH------------HHHHHHHHHHHHHHHhhhCCCCC-
Q 002856 132 RDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSI------------TRHKAHIMKLELILRLLDNDELS- 198 (873)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~i------------erhk~Hi~kLE~lLRlL~N~~l~- 198 (873)
.+++..++++....++.++..+..+.. .....+.+.++.... .+-.-....||.+|..+.++.+.
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~--~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~ 82 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEK--NPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKI 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 457778888888888888888766632 112222233332211 23445667899999999999754
Q ss_pred -hhhhhhhhhH---HHHHHH
Q 002856 199 -PEQVNDVKDL---LEDYVE 214 (873)
Q Consensus 199 -pe~V~~ikdd---ieyYve 214 (873)
++.++.|.+- |..+|+
T Consensus 83 ~~~l~~~l~~~~d~l~~~l~ 102 (113)
T 2lch_A 83 TSDLIDKVKKKLDMVTRELD 102 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 5555555444 444454
No 115
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.95 E-value=1.2e+02 Score=27.62 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc---------C--CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002856 135 LNNLVSELESQIDSFEAELEGLTVKK---------G--KTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (873)
Q Consensus 135 L~~~IdeL~~QiE~~EaE~E~Ls~KK---------~--K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N 194 (873)
|...|++|+++|++...+.|.|..-+ | +.-...|.+....|++.+.-+.||+..|.-|++
T Consensus 20 L~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 20 LQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66788999999988888888884211 1 112458888888999999999999998887753
No 116
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=28.29 E-value=1.6e+02 Score=33.89 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHh-------------------HHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002856 42 EKFEADLKKEIKKLQRY-------------------RDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICE 102 (873)
Q Consensus 42 EKlE~DLKKEIKKLQR~-------------------RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vE 102 (873)
+++...+.+||+++-+. |.||+.|-.-.--- +...|+-.-...++++...|+||-.+-
T Consensus 398 ~~~~~~~~~~i~~~~~~~~g~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~---v~~V~~~v~~~~~~~~~~~f~rfp~L~ 474 (608)
T 3szr_A 398 QEGHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDM---LHTVTDMVRLAFTDVSIKNFEEFFNLH 474 (608)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCSSSCSSCTHHHHHHHHHHHGGGHHHHHHH---HHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cccchhHHHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34566777888877653 88898886553211 001122223334444555666665554
Q ss_pred hhhc
Q 002856 103 KETK 106 (873)
Q Consensus 103 Ke~K 106 (873)
++.|
T Consensus 475 ~~~~ 478 (608)
T 3szr_A 475 RTAK 478 (608)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 117
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=27.90 E-value=69 Score=29.88 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhccc
Q 002856 45 EADLKKEIKKLQRYRDQIKTWIQSS 69 (873)
Q Consensus 45 E~DLKKEIKKLQR~RDQIKtW~~s~ 69 (873)
..+|.++|+.||+.++.|..++..-
T Consensus 88 ~~~l~~~i~~L~~~~~~L~~~~~~~ 112 (135)
T 1q06_A 88 VAEIERHIEELQSMRDQLLALANAC 112 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999888643
No 118
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=27.50 E-value=97 Score=26.73 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccc
Q 002856 46 ADLKKEIKKLQRYRDQIKTWIQSS 69 (873)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s~ 69 (873)
.+|.++|++|++.++.|..++..-
T Consensus 49 ~~l~~~i~~L~~~~~~L~~~~~~~ 72 (99)
T 1q08_A 49 QEVEARIAELQSMQRSLQRLNDAC 72 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999998877643
No 119
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=27.49 E-value=5e+02 Score=26.36 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 129 SETRDWLNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaE~E~L 156 (873)
.+.+.||.++.+++.+-+|..|.--|.+
T Consensus 233 ~~~~~~l~Dv~dh~~~~~e~~~~~re~l 260 (280)
T 4egw_A 233 KEDRENFEDLYYDTLQLIDMSATYREVL 260 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999888765554
No 120
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=27.40 E-value=4.9e+02 Score=26.22 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=39.3
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHH
Q 002856 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLI 91 (873)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~I 91 (873)
-.+|+++.+++..+......+....+..=.+-|+.=+|.+||. +|+.+ ..+...|+.-
T Consensus 83 ~~~L~~f~~~l~ei~~~~~~l~~~~~~~~~~PL~~f~~~dlk~----------------~ke~k------k~fdk~~~~y 140 (265)
T 2q12_A 83 SSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKE----------------ILTLK------EVFQIASNDH 140 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHH----------------HHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHH------HHHHHHHHHH
Confidence 3456666666666655555554222222233444444444443 23222 2677777778
Q ss_pred HHHHHHHHHHHhh
Q 002856 92 EREMERFKICEKE 104 (873)
Q Consensus 92 E~~MErFK~vEKe 104 (873)
+..++||..+.|.
T Consensus 141 d~al~k~~~~~k~ 153 (265)
T 2q12_A 141 DAAINRYSRLSKK 153 (265)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHhcCCCC
Confidence 8888888888774
No 121
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=27.31 E-value=2.3e+02 Score=28.15 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002856 135 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 195 (873)
Q Consensus 135 L~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~ 195 (873)
|..+|+..-.=+|.++.++|.|... ...-.++-.|+..+-+.+..+.-+..+|..|..+
T Consensus 142 ld~ivd~y~~~l~~l~~~id~lE~~--~~~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~ 200 (252)
T 3ck6_A 142 IEGLNGKIDLYLDTIEETLNEFDVN--DESTYNHIAAQKALISIKRFIRPQQYAIRDLIES 200 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTT--CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444444445555555554322 1223578899999999999999988888776654
No 122
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=26.85 E-value=1.7e+02 Score=30.86 Aligned_cols=110 Identities=20% Similarity=0.267 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC----CCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002856 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK----TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV 158 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k----~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~ 158 (873)
.|.|.-+.+|...||-|..|-+.--+ |.. + .+...++-.+...|...+=+.|+..+|..+.
T Consensus 43 SleEIqkKLeAAEERRks~Ea~~lk~------lae--krEhe~evlqKa~Een~~F~k~aeEkL~~KME~~kE------- 107 (240)
T 4f61_I 43 SLEEIQKKLEAAEERRKYQEAELLKH------LAE--KREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKE------- 107 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH------TTH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHH------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 58899999999999999888664322 210 0 0011122223444444444455444444432
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh--hCCCCChhhhhhhhhHHHHHHH
Q 002856 159 KKGKTRPPRLTHLETSITRHKAHIMKLELILRLL--DNDELSPEQVNDVKDLLEDYVE 214 (873)
Q Consensus 159 KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL--~N~~l~pe~V~~ikddieyYve 214 (873)
-|-..|..+++|.+-|-...|.|-|.+ .|+...-+-..+|+.-++.+-+
T Consensus 108 -------nReA~laal~erLkek~~~aeeVRr~~~~~~~~~~k~~~eei~~KLeaAeE 158 (240)
T 4f61_I 108 -------NREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKE 158 (240)
T ss_dssp -------HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 255678888999999999999988865 5544444555556666665544
No 123
>2a1d_D Staphylocoagulase; prothrombin activator, hydrolase-hydrolase inhibitor complex; HET: 0G6 NDG; 3.50A {Staphylococcus aureus}
Probab=26.74 E-value=5.9e+02 Score=27.83 Aligned_cols=56 Identities=23% Similarity=0.414 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccC--CC--------CchhhHHHHHHHH--------H--HHHHHHHHHHHHHhh
Q 002856 137 NLVSELESQIDSFEAELEGLTVKKG--KT--------RPPRLTHLETSIT--------R--HKAHIMKLELILRLL 192 (873)
Q Consensus 137 ~~IdeL~~QiE~~EaE~E~Ls~KK~--K~--------~~~r~~~le~~ie--------r--hk~Hi~kLE~lLRlL 192 (873)
.+-+.|...++.|+.|++.+..|.. |. ...++.+|+..|. . |+.|...|-.-|+|+
T Consensus 121 ~I~~sLK~a~~eF~keV~~I~~kn~DLK~f~~~~e~ka~~elndL~nei~~Lg~tf~~~~~~~~~a~eL~aKLDlI 196 (329)
T 2a1d_D 121 ELTESLKSAVKDFEKDVEKIENQHHDLKPFTDEMEEKATSRVDDLANKAYSVYFAFVRDTQHKTEALELKAKVDLV 196 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSGGGSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 3556677777777777777754321 21 1135666666542 3 677776666666665
No 124
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=26.59 E-value=1.9e+02 Score=24.29 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002856 135 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (873)
Q Consensus 135 L~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL 192 (873)
|-++|=.|+.|+..+..|.-. +...+|.-.---.+||.|+|-+
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~---------------m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKK---------------MKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788888877777533 3445555555556788888765
No 125
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=26.57 E-value=1.2e+02 Score=30.64 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=22.0
Q ss_pred HHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHH
Q 002856 53 KKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREME 96 (873)
Q Consensus 53 KKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~ME 96 (873)
+++...-+.++.|+.++| +. .|..++.+.+++...-+.
T Consensus 172 ~~i~~~l~~~~~wl~~~d---~~---~~~~~~~~L~~~~~~i~~ 209 (227)
T 1u00_A 172 QVIDDAAAHLSEVAQGDD---VD---AIEQAIKNVDKQTQDFAA 209 (227)
T ss_dssp HHHHHHHHHHHHHTTSSC---HH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC---HH---HHHHHHHHHHHHHHHHHH
Confidence 344444577888998653 33 355566666655544333
No 126
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=26.49 E-value=1.7e+02 Score=31.01 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCC--CchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC---Chhh---hhhhh
Q 002856 135 LNNLVSELESQIDSFEAELEGLTVKKGKT--RPPRLTHLETSITRHKAHIMKLELILRLLDNDEL---SPEQ---VNDVK 206 (873)
Q Consensus 135 L~~~IdeL~~QiE~~EaE~E~Ls~KK~K~--~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l---~pe~---V~~ik 206 (873)
...++++|+.++|.+|.++- ++.. .-.++-.++..+-+.+..+.-+..++..|..... +.+. ++++.
T Consensus 169 ~~~~l~~l~~~i~~lE~~l~-----~~~~~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~~~~~~~~~~l~dv~ 243 (339)
T 4ev6_A 169 YSRILMNLEDELEELEDKLL-----AGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPITTKEDRENFEDLY 243 (339)
T ss_dssp HHHHHHHHHHHHHHHHHTST-----TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh-----hhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhccccccchHHHHHHHHHH
Confidence 33445555555555554431 1111 1247778888887778888888888877776553 3332 33444
Q ss_pred hHHHHHHH
Q 002856 207 DLLEDYVE 214 (873)
Q Consensus 207 ddieyYve 214 (873)
+++...++
T Consensus 244 ~~~~~l~e 251 (339)
T 4ev6_A 244 YDTLQLID 251 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444443
No 127
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=26.49 E-value=1.3e+02 Score=28.47 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 002856 137 NLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 137 ~~IdeL~~QiE~~EaE~E~L 156 (873)
..|+.|.+.|+.+-+|+|.+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888888887
No 128
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=26.42 E-value=8.3e+02 Score=28.52 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002856 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFK 99 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK 99 (873)
+|++...|++.+. +.+|+.++.|...-+-+-.+....+...+.++-..+++-+++++
T Consensus 437 ~~~~~~~~~~~l~--~~i~~~f~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (695)
T 2j69_A 437 REAFNAALQKAFE--QYITDKSAAWTLTAEKDINAAFKELSRSASQYGASYNQITDQIT 493 (695)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433332 34567777777655332111111122224445555555555544
No 129
>2l3y_A Interleukin-6; cytokine, signaling, GP-130, transcription; NMR {Mus musculus}
Probab=26.38 E-value=32 Score=34.94 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=35.5
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH-HHhHHHHHH
Q 002856 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKT 64 (873)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKL-QR~RDQIKt 64 (873)
|.||+||..|+-+|..+.+-|++.-..+-|+.++. |..-+|-| |.+|+++|.
T Consensus 86 e~CL~rI~sGL~eyq~~L~~lq~~~~~~~~~~~~~-lq~~t~~L~~~i~q~~k~ 138 (190)
T 2l3y_A 86 EICLLKISSGLLEYHSYLEYMKNNLKDNKKDKARV-LQRDTETLIHIFNQEVKD 138 (190)
T ss_dssp CSCSCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCCccchhhHHH-HHHHHHHHHHHHHHHHHc
Confidence 46999999999999999999877655454554442 33344443 555666665
No 130
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=26.03 E-value=2.3e+02 Score=28.88 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=54.6
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHH---HHHHHHHHHhHHHHHHhhccccccccccchhhHHH
Q 002856 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADL---KKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQA 83 (873)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DL---KKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~ 83 (873)
.-.++..+.++|.+....||.-.++-- ...=+.-++.|+ .|.+|||.+.|=-.-..-+.-.-....--...+..
T Consensus 113 aL~~~g~a~~~la~~~~~~~~~i~~~~---l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~k~~eeEle~A~~~ 189 (256)
T 1zww_A 113 ALGEVGEAMRELSEVKDSLDMEVKQNF---IDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKIPDEELRQALEK 189 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 446788889999999999988655442 223333445555 67888888777333322221100001111224457
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002856 84 LVDARKLIEREMERFKICE 102 (873)
Q Consensus 84 L~e~Rk~IE~~MErFK~vE 102 (873)
+.+++......|..|-+-|
T Consensus 190 fe~~~e~~~~~m~~l~~~e 208 (256)
T 1zww_A 190 FDESKEIAESSMFNLLEMD 208 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 7778888888888876544
No 131
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=25.87 E-value=3.9e+02 Score=31.87 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=22.8
Q ss_pred cchhhhHHHHhhhHHHhHHHHHHHHHHhhcC
Q 002856 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDT 35 (873)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a 35 (873)
|..-++++.-+|++.+--|.|+--|..+++-
T Consensus 150 r~~~q~~e~~ik~Le~~Qe~f~~~y~~~~~~ 180 (683)
T 1yvl_A 150 KDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR 180 (683)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444678888888888888888888777633
No 132
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=25.76 E-value=4e+02 Score=25.01 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHH------------HHHHHHHHHHHHHHHhhhCCCCC-
Q 002856 132 RDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSI------------TRHKAHIMKLELILRLLDNDELS- 198 (873)
Q Consensus 132 ~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~i------------erhk~Hi~kLE~lLRlL~N~~l~- 198 (873)
.+++..++++....++.+|..+..|.. .....+.++++.... .+-..-...||.+|..+.++.+.
T Consensus 6 ~ell~~Fl~Ea~e~L~~le~~L~~le~--~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~ 83 (146)
T 1i5n_A 6 SDFYQTFFDEADELLADMEQHLLDLVP--ESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQL 83 (146)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCCT--TSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 357788889999999999998876631 112222233333211 23445667889999999999864
Q ss_pred -hhhhhh---hhhHHHHHHHhC
Q 002856 199 -PEQVND---VKDLLEDYVERN 216 (873)
Q Consensus 199 -pe~V~~---ikddieyYve~n 216 (873)
++.++. ..|-|..+|+.-
T Consensus 84 ~~~l~~~l~~~~D~l~~~l~~~ 105 (146)
T 1i5n_A 84 NTDIINLFLETKDIMQEQLDAY 105 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 444555556543
No 133
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.66 E-value=1.3e+02 Score=26.82 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (873)
Q Consensus 127 ek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~ 193 (873)
...+++.-|+--|++|+.+...+..|.+.+...+- ....+.+.+-+.|.--..+|..||..++
T Consensus 17 ~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~----~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 17 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQRE----ELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44567777777888888888888888777632111 0112233333444444567777776654
No 134
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=25.36 E-value=1.9e+02 Score=33.84 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=26.3
Q ss_pred HHHHHHHhHHHHHHhhcccccc-ccccchhhHHHHHHHHHHHHHHHHHH
Q 002856 51 EIKKLQRYRDQIKTWIQSSEIK-DKKVSASYEQALVDARKLIEREMERF 98 (873)
Q Consensus 51 EIKKLQR~RDQIKtW~~s~eIK-DK~~~~~~~~~L~e~Rk~IE~~MErF 98 (873)
|.++|...-+.++.|+..++.. +|. .|..+|.+.+++...-+.|+
T Consensus 579 ~~~~~~~~l~~~~~wl~~~~~~~~~~---~~~~~~~~l~~~~~~i~~r~ 624 (675)
T 3d2f_A 579 EKTKLQGMLNKAEEWLYDEGFDSIKA---KYIAKYEELASLGNIIRGRY 624 (675)
T ss_dssp HHHHHHHHHHHHHHHTTTGGGGCCHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhhHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3444555557777899754311 222 46667777777666555554
No 135
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=25.16 E-value=6.9e+02 Score=27.16 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=11.6
Q ss_pred hhhhhhhhhHHHHHHH
Q 002856 199 PEQVNDVKDLLEDYVE 214 (873)
Q Consensus 199 pe~V~~ikddieyYve 214 (873)
-+.|.++|.-|..|++
T Consensus 348 ~~Rv~Dfk~~l~eyle 363 (386)
T 4akv_A 348 QRRELDFKHMMQNYLR 363 (386)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667777777777776
No 136
>1alu_A Interleukin-6; cytokine, receptor, signaling, glycoprotein; HET: TLA; 1.90A {Homo sapiens} SCOP: a.26.1.1 PDB: 1il6_A 2il6_A 1p9m_B
Probab=25.05 E-value=81 Score=31.91 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=36.0
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH-HHhHHHHHHh
Q 002856 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKTW 65 (873)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKL-QR~RDQIKtW 65 (873)
+.||.||..|+-+|..+.+-|++.-..+ ++.+ ..|..-+|-| |-+|+++|.|
T Consensus 83 e~CL~ri~~GL~~yq~~L~~l~~~f~~~-~~~~-~~lq~~t~~L~~~i~~k~k~~ 135 (186)
T 1alu_A 83 ETCLVKIITGLLEFEVYLEYLQNRFESS-EEQA-RAVQMSTKVLIQFLQKKAKNL 135 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTT-HHHH-HHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccc-cccH-HHHHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999988886544322 3333 3344444444 6677888887
No 137
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.04 E-value=1.2e+02 Score=34.05 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=39.8
Q ss_pred hhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHH------HHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHH
Q 002856 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKF------EADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQ 82 (873)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKl------E~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~ 82 (873)
+|++.+|++|..=-.+...+-..+...-+..|+-+- -...||.+.++.++...|++=- .....++.
T Consensus 41 ~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~--------~~i~~l~~ 112 (409)
T 1m1j_C 41 LEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHE--------NTIQQLTD 112 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchH--------HHHHHHHH
Confidence 456666666666655555555555554443332221 2233333333333333222211 11223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002856 83 ALVDARKLIEREMERFKICEK 103 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEK 103 (873)
.|.+++..|+.--+....+|.
T Consensus 113 ~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 113 MHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 566666666665444444544
No 138
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=24.83 E-value=6.2e+02 Score=26.51 Aligned_cols=110 Identities=15% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCC
Q 002856 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT 121 (873)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~ 121 (873)
|+|-..|.++|..|+ +.+..-..+.|..|...||
T Consensus 14 e~lr~~l~~~~eel~---------------------~~L~P~~~~l~~~l~~~le------------------------- 47 (273)
T 3s84_A 14 EKLKEEIGKELEELR---------------------ARLLPHANEVSQKIGDNLR------------------------- 47 (273)
T ss_dssp THHHHHHHHHHHHHH---------------------HHHGGGHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHH---------------------HhcCCcHHHHHHHHHHHHH-------------------------
Q ss_pred CchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--h
Q 002856 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS--P 199 (873)
Q Consensus 122 Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~--p 199 (873)
.-|....-|..+.-..++.++|.+...+..+ .+.+-.+++-|+..|-.-|.-+-.+-=+ .
T Consensus 48 ----~lr~~L~Py~~el~~~~~~~~eelr~kL~p~--------------~~el~~~l~~~~eeLr~~L~p~~eelr~kl~ 109 (273)
T 3s84_A 48 ----ELQQRLEPYADQLRTQVNTQAEQLRRQLTPY--------------AQRMERVLRENADSLQASLRPHADELKAKID 109 (273)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhHHHHHHHh
Q 002856 200 EQVNDVKDLLEDYVER 215 (873)
Q Consensus 200 e~V~~ikddieyYve~ 215 (873)
..|++||+-+..|++.
T Consensus 110 ~~veelk~~L~Py~ee 125 (273)
T 3s84_A 110 QNVEELKGRLTPYADE 125 (273)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHhHHHH
No 139
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.50 E-value=1.2e+02 Score=28.43 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=32.8
Q ss_pred chhhhHHHHhhhHHHhHHHHHHHHHHhh---cCCCchhHHHHHHHHHHHHHHHHHhHHH
Q 002856 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVY---DTDNANQKEKFEADLKKEIKKLQRYRDQ 61 (873)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i~~K~~---~a~n~nQKEKlE~DLKKEIKKLQR~RDQ 61 (873)
+++.++-.++|.+.+.|.....+..... +..---|+|||-.|++--|+..|+.-..
T Consensus 55 ~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~ 113 (130)
T 2dnx_A 55 QLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRR 113 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777766665421000 0000116899999888887777765443
No 140
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=24.23 E-value=70 Score=29.52 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhCCCCChhhh-hhhhhHHHHHHHhC
Q 002856 182 IMKLELILRLLDNDELSPEQV-NDVKDLLEDYVERN 216 (873)
Q Consensus 182 i~kLE~lLRlL~N~~l~pe~V-~~ikddieyYve~n 216 (873)
+.+||.|++.|++|.|+-|+. ...++-++.+-.++
T Consensus 36 l~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~ 71 (100)
T 1vp7_A 36 LAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQ 71 (100)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999995554 44666665554433
No 141
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=24.12 E-value=1.9e+02 Score=27.86 Aligned_cols=43 Identities=12% Similarity=0.355 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHH
Q 002856 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSIT 176 (873)
Q Consensus 129 ~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ie 176 (873)
.|++++|..+|..-...+++++.+ .++|+....|.+.|+..++
T Consensus 48 ~e~~~lI~~yl~R~d~ELeql~~~-----rR~gRp~s~Re~~L~~~~~ 90 (144)
T 2kkm_A 48 AHTREFIQSFIERDDTELDELKKK-----RRSNRPPSNRQVLLQQRRD 90 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----GGGTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHh-----hCCCCCCchHHHHHHHHHH
Confidence 566777777766655555555543 3456656678888887764
No 142
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=24.05 E-value=93 Score=30.45 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=8.1
Q ss_pred chhhHHHHHHHHHH
Q 002856 77 SASYEQALVDARKL 90 (873)
Q Consensus 77 ~~~~~~~L~e~Rk~ 90 (873)
..+|+..|+..||.
T Consensus 56 aki~Ak~lvr~rk~ 69 (179)
T 2gd5_A 56 CIVLAKEMIRSRKA 69 (179)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666666654
No 143
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=23.97 E-value=2.6e+02 Score=29.89 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002856 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 195 (873)
Q Consensus 131 ~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~ 195 (873)
..+..-..+++|+.++|.+|.++-. +..+..-.++-.|+..+-+.+..+.-+..+|..|..+
T Consensus 189 ivd~y~~~l~~l~~~id~lE~~v~~---~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~ 250 (363)
T 2iub_A 189 LVDDYFVLLEKIDDEIDVLEEEVLE---RPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRD 250 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS---SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555566666666666665421 1111123578888888888889999888888877654
No 144
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=23.95 E-value=1.1e+02 Score=29.22 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhc
Q 002856 45 EADLKKEIKKLQRYRDQIKTWIQ 67 (873)
Q Consensus 45 E~DLKKEIKKLQR~RDQIKtW~~ 67 (873)
..+|.++|+.||++++.|..++.
T Consensus 99 ~~~l~~qi~~L~~~~~~L~~~~~ 121 (154)
T 2zhg_A 99 REELDRRIHTLVALRDELDGCIG 121 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45899999999999999999986
No 145
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=23.76 E-value=1.9e+02 Score=25.93 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=33.9
Q ss_pred HHHhhhHHHhHHHHHHHHHHhh----cCC-CchhHHHHHHHHHHHHHHHHH-hHHHHHHh
Q 002856 12 DRVLKKVQEGVDVFDSIWNKVY----DTD-NANQKEKFEADLKKEIKKLQR-YRDQIKTW 65 (873)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~~K~~----~a~-n~nQKEKlE~DLKKEIKKLQR-~RDQIKtW 65 (873)
..+++.|..+++.=+++-+.|. +.. ++++|-+|-+-|+-=-+.|.+ ++..+|.-
T Consensus 33 k~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 33 NTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777777777777765 332 556787777666555555555 55555443
No 146
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=23.64 E-value=3.3e+02 Score=22.90 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 002856 135 LNNLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 135 L~~~IdeL~~QiE~~EaE~E~L 156 (873)
.+.-|.+|+++|..|+.||++|
T Consensus 54 ~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4556899999999999999987
No 147
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=23.60 E-value=2.4e+02 Score=28.82 Aligned_cols=64 Identities=14% Similarity=0.206 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 002856 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (873)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~ 196 (873)
...+..-.++++|+.++|.+|.++-.- ..+..-.++-.|+..+-..+..+.-+..+|..|.++.
T Consensus 164 ~ivd~y~~~l~~i~~~id~lE~~l~~~---~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 227 (280)
T 4egw_A 164 EITRSYSRILMNLEDELEELEDKLLAG---YDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKY 227 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Confidence 345556667788888888888775321 1111124777888888778888888888777776554
No 148
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.50 E-value=5.6e+02 Score=29.19 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 002856 167 RLTHLETSITRHKAHIMKLELILR 190 (873)
Q Consensus 167 r~~~le~~ierhk~Hi~kLE~lLR 190 (873)
.|..|+..++.++..|.+||..+.
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666554
No 149
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=23.49 E-value=3.1e+02 Score=26.86 Aligned_cols=65 Identities=11% Similarity=0.238 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHH
Q 002856 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 209 (873)
Q Consensus 130 E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddi 209 (873)
+..+|--.-|.+|++++..+|+++.. ++...-+++.-.+..|. +++..+...|
T Consensus 16 ~~~~~alr~ia~l~r~~~~i~~~~n~--------------eI~~ik~~~~~~~~~l~-------------~~i~~l~~~l 68 (171)
T 2p2u_A 16 RQAEGALAEIATIDRKVGEIEAQMNE--------------AIDAAKARASQKSAPLL-------------ARRKELEDGV 68 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Confidence 44677778899999999999998643 34444455555555543 6778888999
Q ss_pred HHHHHhCCC-CCC
Q 002856 210 EDYVERNQD-DFE 221 (873)
Q Consensus 210 eyYve~nqd-df~ 221 (873)
..|.+.|-+ +|.
T Consensus 69 ~~y~e~~r~elf~ 81 (171)
T 2p2u_A 69 ATFATLNKTEMFK 81 (171)
T ss_dssp HHHHHHTHHHHCC
T ss_pred HHHHHHhHHHhcC
Confidence 999999944 544
No 150
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=23.49 E-value=7e+02 Score=26.69 Aligned_cols=162 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred chhhhHHH----HhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHH------HHHHHHHHHHHhHHHH-------HHhhcc
Q 002856 6 KLQGEIDR----VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEA------DLKKEIKKLQRYRDQI-------KTWIQS 68 (873)
Q Consensus 6 KLQ~EIDr----~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~------DLKKEIKKLQR~RDQI-------KtW~~s 68 (873)
+++++||. ..+++++=..-.+...+.+.+..-..--+..+. +++++|..++...+.| ..-+..
T Consensus 239 ~~~~~~e~l~~~f~~~a~~~~~Wl~~~~~~l~~~~~~~dl~~v~~ll~~h~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~ 318 (476)
T 1hci_A 239 KLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQS 318 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ccc----cccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc--------ccccccccCCCCCCCchHHhHHHHHHHHH
Q 002856 69 SEI----KDKKVSASYEQALVDARKLIEREMERFKICEKETKT--------KAFSKEGLGQQPKTDPKEKAKSETRDWLN 136 (873)
Q Consensus 69 ~eI----KDK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~Kt--------KafSkEGL~~~~k~Dp~ekek~E~~~wL~ 136 (873)
..+ ....+...+...-..+..+.+...+|-+.++....- +.| .....++..||.
T Consensus 319 ~~~~~~~~~~~i~~~~~~L~~~w~~L~~~~~~R~~~L~~~l~~~~~~~~L~~~F--------------~~~a~~~~~Wl~ 384 (476)
T 1hci_A 319 YNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQF--------------AAQANAIGPWIQ 384 (476)
T ss_dssp TTCCSCSCCTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
T ss_pred cCCCcCCCCcchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------------HHHHHHHHHHHH
Q ss_pred HHHHHHHHH----HHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002856 137 NLVSELESQ----IDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (873)
Q Consensus 137 ~~IdeL~~Q----iE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~ 193 (873)
+.-..|... .+.+|.-++.+ ..++.-|+.++-.|..|+.+-..|.
T Consensus 385 e~e~~l~~~~~~~~~~le~~l~~~------------~~~~~el~~~~~~~~~l~~~~~~l~ 433 (476)
T 1hci_A 385 NKMEEIARSSIQITGALEDQMNQL------------KQYEHNIINYKNNIDKLEGDHQLIQ 433 (476)
T ss_dssp HHHHHHHSCSCTTTTSTHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCCCHHHHHHHH------------HHHHHHHHHHHhhHHHHHHHHHHHH
No 151
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=23.49 E-value=5.8e+02 Score=25.66 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 002856 41 KEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (873)
|.+||.-|. +-+..+--+.+..|+..
T Consensus 102 ~~~Le~~~~--l~~f~~~~~~~~~Wl~e 127 (322)
T 1u4q_A 102 RAKLNESHR--LHQFFRDMDDEESWIKE 127 (322)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 445554443 33444445667888864
No 152
>1i1r_B Viral IL-6; cytokine/receptor complex, GP130; 2.40A {Human herpesvirus 8} SCOP: a.26.1.1
Probab=23.40 E-value=1.1e+02 Score=30.75 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=31.5
Q ss_pred HHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH-HHhHHHHHHh
Q 002856 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKTW 65 (873)
Q Consensus 12 Dr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKL-QR~RDQIKtW 65 (873)
+.||.||..|+-+|..+.+-|++.-..+ ++.++ .|..-+|-| |-+|+++|.|
T Consensus 68 e~CL~rI~~GL~~yq~~L~~l~~~f~~~-~~~v~-~lq~~t~~L~~~i~q~~k~~ 120 (181)
T 1i1r_B 68 TSCLKKLADGFFEFEVLFKFLTTEFGKS-VINVD-VMELLTKTLGWDIQEELNKL 120 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT-STTGG-GHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccc-cccHH-HHHHHHHHHHHHHHHHHhCc
Confidence 6899999999999999888665332211 11111 122233333 5566777777
No 153
>1xs8_A UPF0269 protein YGGX; helix-turn-helix, metal transport; NMR {Salmonella typhimurium} SCOP: d.279.1.1 PDB: 1yhd_A
Probab=22.90 E-value=39 Score=30.82 Aligned_cols=15 Identities=47% Similarity=0.722 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHH
Q 002856 85 VDARKLIEREMERFK 99 (873)
Q Consensus 85 ~e~Rk~IE~~MErFK 99 (873)
-++|+.+|++||+|=
T Consensus 60 ~~~Rk~L~~qMekFf 74 (91)
T 1xs8_A 60 AEHRKLLEQEMVSFL 74 (91)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 479999999999994
No 154
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=22.88 E-value=1.7e+02 Score=27.80 Aligned_cols=42 Identities=14% Similarity=0.340 Sum_probs=34.9
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHH
Q 002856 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60 (873)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RD 60 (873)
|+-|++|+-+--..-+..|++. |-.|-.|+.+||-++.|-.|
T Consensus 37 L~~ELeRLr~~~d~~~K~HE~k------------klqLkse~e~E~ae~k~KYD 78 (115)
T 3vem_A 37 FLHELEKLRRESENSKKTFEEK------------KSILKAELERKMAEVQAEFR 78 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 7789999998888888888876 66788889999999887554
No 155
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=22.74 E-value=2.2e+02 Score=26.84 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-
Q 002856 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG- 161 (873)
Q Consensus 83 ~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~- 161 (873)
.+...++-++..|+-++.+|...+ ..+.++ ..-|.+|..+++.-|..+..|...=.
T Consensus 14 ~~~ql~~qL~k~~~~r~~Le~~w~-------------------~k~E~~----k~qV~~L~~~~q~sE~~L~~Lqq~fsq 70 (112)
T 1x79_B 14 MLRQANDQLEKTMKDKQELEDFIK-------------------QSSEDS----SHQISALVLRAQASEILLEELQQGLSQ 70 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888887722 222222 24789999999999999999843211
Q ss_pred -CC-CchhhHHHHHHHHHHHHHHHHHH
Q 002856 162 -KT-RPPRLTHLETSITRHKAHIMKLE 186 (873)
Q Consensus 162 -K~-~~~r~~~le~~ierhk~Hi~kLE 186 (873)
|. -..++..|...-++-..|+.+|.
T Consensus 71 ~q~~vq~qL~~Lt~~Re~V~~eL~rLQ 97 (112)
T 1x79_B 71 AKRDVQEQMAVLMQSREQVSEELVRLQ 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 13455555555555555555554
No 156
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=22.67 E-value=3.5e+02 Score=24.88 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 002856 137 NLVSELESQIDSFEAELEGL 156 (873)
Q Consensus 137 ~~IdeL~~QiE~~EaE~E~L 156 (873)
+.+++|+.+|+.+..+|=.|
T Consensus 12 ~~L~~lR~~ID~ID~~il~L 31 (114)
T 3rmi_A 12 SELAYLRQSIDNFDITLIHI 31 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888887655
No 157
>1t07_A Hypothetical UPF0269 protein PA5148; structural genomics, APC5047, conserved hypothetical protein, PSI, protein structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa} SCOP: d.279.1.1
Probab=22.50 E-value=40 Score=30.91 Aligned_cols=14 Identities=36% Similarity=0.921 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHH
Q 002856 85 VDARKLIEREMERF 98 (873)
Q Consensus 85 ~e~Rk~IE~~MErF 98 (873)
-++||.+|++||+|
T Consensus 62 ~~aRk~L~~qMekF 75 (94)
T 1t07_A 62 AEDRKFLQQEMDKF 75 (94)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47899999999999
No 158
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=22.47 E-value=4.7e+02 Score=24.30 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002856 133 DWLNNLVSELESQIDSFEAELEGLTVK 159 (873)
Q Consensus 133 ~wL~~~IdeL~~QiE~~EaE~E~Ls~K 159 (873)
..|...|.+|+..++..|.....|..+
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~ 105 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAK 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666433
No 159
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=21.85 E-value=5.6e+02 Score=24.94 Aligned_cols=104 Identities=21% Similarity=0.330 Sum_probs=54.5
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHH----------HHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhcccccccccc
Q 002856 7 LQGEIDRVLKKVQEGVDVFDSIW----------NKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKV 76 (873)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~----------~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~ 76 (873)
|+++++-+-+...|--+..|-+- +.++.-++..||| =+-|+.|.--+||--+-.-.-+.-|++.--.
T Consensus 16 L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKE--i~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQ- 92 (167)
T 4gkw_A 16 LKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKE--IGKLRAELGTAQRNLEKADQLLKRNSQQQNQ- 92 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHH--HHHHHHHHHHHHHhHHHHHHHHHhhhHHHhH-
Confidence 45555555554444444443222 1222333444444 2344444444487777666666665554322
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHH
Q 002856 77 SASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQID 147 (873)
Q Consensus 77 ~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE 147 (873)
.-++-||+=| +|- | -|+|.-+.+-|..+|.-|++.+|
T Consensus 93 ------QSlDiRKLrE--------LEA------------------D--LKEKDsMVe~LT~TiG~LrKELE 129 (167)
T 4gkw_A 93 ------QSLDMRKLGE--------LEA------------------D--LKEKDSMVESLTETIGILRKELE 129 (167)
T ss_dssp ------HHHHHHHTHH--------HHH------------------T--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hhhhHHHHHH--------HHh------------------H--HhhhhHHHHHHHHHHHHHHHHHH
Confidence 5566666633 332 2 35667777777777777776553
No 160
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=21.78 E-value=5.2e+02 Score=24.50 Aligned_cols=17 Identities=18% Similarity=0.179 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhHHHHH
Q 002856 47 DLKKEIKKLQRYRDQIK 63 (873)
Q Consensus 47 DLKKEIKKLQR~RDQIK 63 (873)
.+++-+..|....+.++
T Consensus 77 ~i~~~l~~L~~~w~~L~ 93 (214)
T 1s35_A 77 LLGQRLEGLDTGWDALG 93 (214)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 161
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=21.68 E-value=62 Score=28.09 Aligned_cols=51 Identities=14% Similarity=0.276 Sum_probs=28.4
Q ss_pred HHHHHHHhHHHHHHhhcccccc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002856 51 EIKKLQRYRDQIKTWIQSSEIK--DKKVSASYEQALVDARKLIEREMERFKICEKETKTK 108 (873)
Q Consensus 51 EIKKLQR~RDQIKtW~~s~eIK--DK~~~~~~~~~L~e~Rk~IE~~MErFK~vEKe~KtK 108 (873)
++.+.|+--|.+-.||..-+-+ .-. .+-..-..|+.+|+++|+++++...+
T Consensus 3 ~L~~f~~~l~el~~WL~e~e~~l~~~~-------~~~~d~~~v~~~l~~h~~l~~ei~~~ 55 (118)
T 3uul_A 3 DLDSYQIALEEVLTWLLSAEDTFQEQD-------DISDDVEDVKEQFATHETFMMELSAH 55 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSC-------CCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667788888654321 101 11112345667777777777776544
No 162
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=21.67 E-value=92 Score=33.93 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhc----cc-CCCCchhhHHHHHHHHHHHHHHHHHH
Q 002856 138 LVSELESQIDSFEAELEGLTV----KK-GKTRPPRLTHLETSITRHKAHIMKLE 186 (873)
Q Consensus 138 ~IdeL~~QiE~~EaE~E~Ls~----KK-~K~~~~r~~~le~~ierhk~Hi~kLE 186 (873)
.+++|+.+++.++.+++++.. +. .||...|+.+++..++++.-.|...+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 301 (426)
T 1lrz_A 248 YIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGK 301 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555521 11 12223567777777777655444433
No 163
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=21.58 E-value=1.5e+02 Score=34.15 Aligned_cols=55 Identities=25% Similarity=0.363 Sum_probs=41.4
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhc-------------CCCchhHHHHHHHHHHHHHHHHHhHHH
Q 002856 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYD-------------TDNANQKEKFEADLKKEIKKLQRYRDQ 61 (873)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~~K~~~-------------a~n~nQKEKlE~DLKKEIKKLQR~RDQ 61 (873)
-|+|+.|+-|.=++..+.|+..-...+. ..|+.-|.+||++|++-=+.|-++..+
T Consensus 14 yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 14 YQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999988888888776665553 223334788999999888888877665
No 164
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=21.42 E-value=1.4e+02 Score=26.88 Aligned_cols=20 Identities=45% Similarity=0.660 Sum_probs=13.9
Q ss_pred CCchhHHHHHH--------------HHHHHHHHH
Q 002856 36 DNANQKEKFEA--------------DLKKEIKKL 55 (873)
Q Consensus 36 ~n~nQKEKlE~--------------DLKKEIKKL 55 (873)
.+..+|+.|+. +||||||-|
T Consensus 37 ~~~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk~L 70 (86)
T 3r84_A 37 GNESVKPQFENHVKQFYERLDKSTTQLRKEIQLL 70 (86)
T ss_dssp TCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888876 566666655
No 165
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=21.31 E-value=92 Score=26.85 Aligned_cols=20 Identities=0% Similarity=0.101 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 002856 89 KLIEREMERFKICEKETKTK 108 (873)
Q Consensus 89 k~IE~~MErFK~vEKe~KtK 108 (873)
..|+..|+++|+++++...+
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~ 55 (119)
T 3uun_A 36 EVVKDQFHTHEGYMMDLTAH 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777776554
No 166
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=21.30 E-value=95 Score=28.30 Aligned_cols=32 Identities=31% Similarity=0.577 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhccccccccc
Q 002856 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK 75 (873)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~ 75 (873)
++|+..+.|++|++.- +.++.||.+++-.|+.
T Consensus 40 ~dkl~~eek~~I~~~i---~el~~~L~~~~~ad~e 71 (120)
T 2p32_A 40 KDKISPEDKKKIEDKC---DEILKWLDSNQTAEKE 71 (120)
T ss_dssp GGGSCHHHHHHHHHHH---HHHHHHHHHHTTCCHH
T ss_pred hccCCHHHHHHHHHHH---HHHHHHHHcCCcCCHH
Confidence 5677777777665543 5677799755323443
No 167
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=21.12 E-value=3.1e+02 Score=24.36 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchH------HhHHHHHHHHHHHHHHHHHHHHHHH
Q 002856 80 YEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKE------KAKSETRDWLNNLVSELESQIDSFE 150 (873)
Q Consensus 80 ~~~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~e------kek~E~~~wL~~~IdeL~~QiE~~E 150 (873)
.|+.|..+|++++.+-+.|- .||.+ ..|..+..-|.+-|.+|++|+-..-
T Consensus 17 ~E~QL~~A~QKLkdA~~~~e---------------------~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 17 HEQRLVTTRQKLKDAERAVE---------------------LDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc---------------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999988887766651 26655 4667778888888888888875443
No 168
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.03 E-value=95 Score=34.30 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHH
Q 002856 169 THLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYV 213 (873)
Q Consensus 169 ~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYv 213 (873)
.+++..++..+..+.+.|.+.|.|.| +|.++|..|.=||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~rr~l~n------~~~elkgnIrV~v 65 (403)
T 4etp_A 27 KDTELGMKELNEILIKEETVRRTLHN------ELQELRGNIRVYL 65 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHcCCCeEEEE
Confidence 33444555555556666666666644 3445554444443
No 169
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=20.77 E-value=1.3e+02 Score=32.21 Aligned_cols=56 Identities=13% Similarity=0.360 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002856 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 190 (873)
Q Consensus 127 ek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~K~~~~r~~~le~~ierhk~Hi~kLE~lLR 190 (873)
.-.++..|-..-+.+|+.+|+..+.++..+ ..+++++-..|......|.++..|++
T Consensus 206 s~~~an~yTd~k~~~l~n~I~~V~n~~~q~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (268)
T 2yo3_A 206 SVEEANTYTDQKMGEMNSKIKGVENKMKQI--------EDKIEEILSKIYHIENEIARIKKLIK 261 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 335677788889999999999999887665 23445555544444444444444444
No 170
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=20.63 E-value=2.1e+02 Score=27.53 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=21.7
Q ss_pred hhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Q 002856 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ 56 (873)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQ 56 (873)
|..||-+.+|++...|..++..-. ......+|.++|-.+|+.-+++.|
T Consensus 54 l~~~i~~~~~~~~~~lk~l~~~~~--~~r~~k~~~~~L~~~f~~~~~~fq 101 (196)
T 1fio_A 54 FVAQATDLQFKLKNEIKSAQRDGI--HDTNKQAQAENSRQRFLKLIQDYR 101 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcch--hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666555555554321 000112344555555554444444
No 171
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=20.58 E-value=3.4e+02 Score=24.32 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHH-HHHHHHHH
Q 002856 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIER-EMERFKIC 101 (873)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~-~MErFK~v 101 (873)
+-||-.|..|.|==|=.---|++..+. -.|||+.-+..-+.|.|.|.+||- +|.-.|+.
T Consensus 11 ~~L~kqL~IElkVK~GAENmi~~y~~g-~~~drKlLaeAQqmL~DSk~KIe~lRmqI~k~~ 70 (81)
T 1urf_A 11 AGLEKQLAIELKVKQGAENMIQTYSNG-STKDRKLLLTAQQMLQDSKTKIDIIRMQLRRAL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777778888555 478998666677788888888885 77766643
No 172
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=20.35 E-value=2.2e+02 Score=30.87 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=35.8
Q ss_pred hHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHH
Q 002856 17 KVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREME 96 (873)
Q Consensus 17 KV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~~~L~e~Rk~IE~~ME 96 (873)
.|-+=.+.|+.+|+.|..+.+...|++| |+-|.+|+ ++|+.=+..-+ ..-..|.+.|..++..=-
T Consensus 94 ~I~~Y~~~f~syy~~L~~~~d~~d~~~l----~~~L~~L~---~~i~~~q~~~~--------~~~~~L~~F~~~l~~d~~ 158 (346)
T 2nrj_A 94 GIVEYDTTFDNYYETMVEAINTGDGETL----KEGITDLR---GEIQQNQKYAQ--------QLIEELTKLRDSIGHDVR 158 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHH----HHHHHHHH---HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchHHHH----HHHHHHHH---HHHHHHHHHHH--------HHHHHHHHHHHHHHhhHh
Confidence 3344445677778888766544444443 43333333 33333222211 111256666666666666
Q ss_pred HHHHHHh
Q 002856 97 RFKICEK 103 (873)
Q Consensus 97 rFK~vEK 103 (873)
.||..-.
T Consensus 159 ~f~~~~~ 165 (346)
T 2nrj_A 159 AFGSNKE 165 (346)
T ss_dssp HHHHHHH
T ss_pred hHHhHHH
Confidence 6655443
No 173
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=20.11 E-value=1e+02 Score=32.56 Aligned_cols=15 Identities=7% Similarity=-0.194 Sum_probs=9.9
Q ss_pred hhhhhhHHHHHHHhC
Q 002856 202 VNDVKDLLEDYVERN 216 (873)
Q Consensus 202 V~~ikddieyYve~n 216 (873)
-.||+.-|+.|=-..
T Consensus 278 ~~Di~~fi~~~gtG~ 292 (320)
T 3m3w_A 278 EEDLRWWRSTHGPGM 292 (320)
T ss_dssp HHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHhcCCCC
Confidence 367788888874443
Done!