Query 002859
Match_columns 873
No_of_seqs 341 out of 2414
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 12:14:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046 Puromycin-sensitive am 100.0 1E-153 2E-158 1379.1 83.7 844 3-869 24-881 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 4E-126 9E-131 1143.6 83.9 793 13-853 13-830 (831)
3 COG0308 PepN Aminopeptidase N 100.0 4.6E-93 1E-97 855.4 67.1 813 9-855 12-856 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 3E-83 6.5E-88 759.0 76.2 706 11-760 4-766 (863)
5 PRK14015 pepN aminopeptidase N 100.0 4.8E-82 1E-86 751.3 77.3 706 11-760 16-776 (875)
6 TIGR02411 leuko_A4_hydro leuko 100.0 7E-76 1.5E-80 679.9 40.8 425 11-462 8-453 (601)
7 PF01433 Peptidase_M1: Peptida 100.0 8.2E-74 1.8E-78 645.5 37.4 382 9-392 1-390 (390)
8 KOG1047 Bifunctional leukotrie 100.0 1.4E-52 3E-57 445.7 28.3 429 11-459 13-459 (613)
9 PF11838 ERAP1_C: ERAP1-like C 100.0 1.2E-51 2.6E-56 453.4 29.3 313 529-846 1-324 (324)
10 KOG1932 TATA binding protein a 100.0 2.4E-34 5.2E-39 327.7 32.0 426 16-461 27-505 (1180)
11 PF13485 Peptidase_MA_2: Pepti 99.1 6.7E-11 1.4E-15 110.7 6.6 107 295-415 22-128 (128)
12 COG3975 Predicted protease wit 99.1 4E-09 8.7E-14 114.5 19.0 245 218-472 172-447 (558)
13 PF10460 Peptidase_M30: Peptid 97.3 0.01 2.2E-07 64.1 17.3 143 295-452 136-285 (366)
14 PF05299 Peptidase_M61: M61 gl 96.9 0.0006 1.3E-08 61.8 2.8 43 298-340 4-57 (122)
15 PF11940 DUF3458: Domain of un 96.4 0.55 1.2E-05 51.7 21.5 303 465-799 6-344 (367)
16 PF04450 BSP: Peptidase of pla 96.0 0.11 2.4E-06 52.1 12.7 172 232-447 25-204 (205)
17 PF07607 DUF1570: Protein of u 96.0 0.0043 9.3E-08 56.9 2.4 40 299-338 2-43 (128)
18 PF10026 DUF2268: Predicted Zn 92.3 0.43 9.4E-06 47.9 7.5 100 236-342 4-113 (195)
19 smart00638 LPD_N Lipoprotein N 91.6 2.8 6.2E-05 49.9 14.6 198 546-760 356-560 (574)
20 PF10023 DUF2265: Predicted am 91.2 1.1 2.3E-05 48.2 9.2 115 221-341 39-202 (337)
21 PRK04860 hypothetical protein; 85.3 1.5 3.3E-05 42.1 5.2 70 233-311 5-76 (160)
22 COG4324 Predicted aminopeptida 83.3 1.2 2.7E-05 45.0 3.7 40 296-341 195-234 (376)
23 PF01863 DUF45: Protein of unk 82.1 8.6 0.00019 38.8 9.6 94 231-351 108-201 (205)
24 smart00731 SprT SprT homologue 80.2 1.6 3.5E-05 41.5 3.2 67 239-312 5-73 (146)
25 PF01347 Vitellogenin_N: Lipop 80.2 17 0.00037 43.7 12.8 196 547-759 395-603 (618)
26 PF03272 Enhancin: Viral enhan 77.2 88 0.0019 38.4 17.3 129 300-448 238-377 (775)
27 PF12725 DUF3810: Protein of u 73.4 5 0.00011 43.5 5.1 32 297-340 195-226 (318)
28 PF12315 DUF3633: Protein of u 67.2 8.6 0.00019 38.2 4.6 41 298-340 93-133 (212)
29 PF13646 HEAT_2: HEAT repeats; 65.1 11 0.00023 31.9 4.5 75 656-742 14-88 (88)
30 PF01435 Peptidase_M48: Peptid 62.7 5.8 0.00013 40.6 2.8 73 238-317 34-108 (226)
31 PF04234 CopC: CopC domain; I 62.5 33 0.00071 29.9 7.1 62 44-108 17-81 (97)
32 PF01447 Peptidase_M4: Thermol 57.4 16 0.00034 34.8 4.5 74 228-309 67-146 (150)
33 COG4783 Putative Zn-dependent 55.6 12 0.00026 41.9 3.8 54 252-310 89-142 (484)
34 PF10989 DUF2808: Protein of u 54.5 37 0.00079 32.2 6.5 49 72-121 75-123 (146)
35 PRK04351 hypothetical protein; 53.5 11 0.00024 35.9 2.6 15 295-309 58-72 (149)
36 COG1451 Predicted metal-depend 51.2 90 0.002 32.0 9.1 93 231-350 119-211 (223)
37 PF06114 DUF955: Domain of unk 49.1 16 0.00034 32.8 3.0 19 297-315 41-59 (122)
38 PRK09687 putative lyase; Provi 47.9 3.7E+02 0.008 28.6 16.1 91 657-758 143-233 (280)
39 COG0501 HtpX Zn-dependent prot 47.1 30 0.00065 37.1 5.3 65 244-316 108-175 (302)
40 PRK03001 M48 family peptidase; 45.3 33 0.00071 36.7 5.1 68 237-313 69-139 (283)
41 PRK03982 heat shock protein Ht 44.8 39 0.00084 36.2 5.6 68 237-313 70-140 (288)
42 COG2372 CopC Uncharacterized p 44.0 64 0.0014 29.5 5.8 61 46-109 46-110 (127)
43 PRK03072 heat shock protein Ht 43.3 46 0.00099 35.6 5.8 69 236-313 71-142 (288)
44 PRK02870 heat shock protein Ht 43.2 46 0.001 36.4 5.8 64 238-309 118-184 (336)
45 PRK04897 heat shock protein Ht 42.5 31 0.00067 37.1 4.4 68 237-313 82-152 (298)
46 PRK05457 heat shock protein Ht 42.0 36 0.00077 36.4 4.7 68 237-313 79-149 (284)
47 PF10263 SprT-like: SprT-like 41.5 17 0.00036 34.9 2.0 19 294-312 56-74 (157)
48 PF08325 WLM: WLM domain; Int 41.3 87 0.0019 31.1 6.9 24 291-314 75-98 (186)
49 PF14675 FANCI_S1: FANCI solen 41.2 67 0.0015 32.8 6.3 116 565-685 4-123 (223)
50 PRK01345 heat shock protein Ht 39.0 64 0.0014 35.1 6.1 68 237-313 69-139 (317)
51 COG0362 Gnd 6-phosphogluconate 37.9 1.7E+02 0.0038 32.4 8.9 117 563-700 312-443 (473)
52 PF00046 Homeobox: Homeobox do 37.8 1.1E+02 0.0023 23.3 5.7 46 814-869 7-52 (57)
53 PRK10301 hypothetical protein; 37.3 1.9E+02 0.004 26.6 8.0 26 84-109 84-109 (124)
54 cd04269 ZnMc_adamalysin_II_lik 37.1 88 0.0019 31.1 6.5 14 297-310 130-143 (194)
55 COG3227 LasB Zinc metalloprote 36.5 33 0.00072 38.4 3.4 108 225-339 266-379 (507)
56 COG3091 SprT Zn-dependent meta 36.4 51 0.0011 31.0 4.1 23 237-259 7-29 (156)
57 PRK02391 heat shock protein Ht 36.2 67 0.0014 34.5 5.7 68 237-313 78-148 (296)
58 PF10805 DUF2730: Protein of u 36.0 1.3E+02 0.0028 26.8 6.5 73 781-855 1-87 (106)
59 PRK01265 heat shock protein Ht 35.9 60 0.0013 35.3 5.3 66 238-312 86-154 (324)
60 KOG1991 Nuclear transport rece 35.3 5.3E+02 0.012 32.1 13.1 134 562-700 102-252 (1010)
61 PF13574 Reprolysin_2: Metallo 32.3 29 0.00063 34.0 2.0 13 298-310 111-123 (173)
62 KOG2062 26S proteasome regulat 30.6 1.1E+02 0.0024 36.4 6.3 127 650-785 494-629 (929)
63 PF13934 ELYS: Nuclear pore co 30.2 4E+02 0.0088 27.3 10.1 94 693-792 74-170 (226)
64 PF13688 Reprolysin_5: Metallo 30.0 41 0.00088 33.5 2.7 15 296-310 140-154 (196)
65 PF04597 Ribophorin_I: Ribopho 29.8 4.8E+02 0.01 29.8 11.5 85 24-108 10-102 (432)
66 PHA02456 zinc metallopeptidase 29.5 36 0.00078 29.8 1.8 15 297-311 78-92 (141)
67 PF08014 DUF1704: Domain of un 29.2 2.6E+02 0.0056 30.9 8.8 84 239-337 117-213 (349)
68 cd00086 homeodomain Homeodomai 27.5 1.3E+02 0.0028 22.8 4.6 47 814-870 7-53 (59)
69 PF13205 Big_5: Bacterial Ig-l 27.0 3.9E+02 0.0085 23.0 8.4 26 83-108 59-85 (107)
70 PF01431 Peptidase_M13: Peptid 25.6 57 0.0012 32.8 2.9 32 284-315 22-53 (206)
71 PF03715 Noc2: Noc2p family; 25.4 1.5E+02 0.0032 31.9 6.0 50 820-869 228-285 (299)
72 PF14524 Wzt_C: Wzt C-terminal 25.3 1.4E+02 0.0029 27.5 5.3 25 83-107 83-107 (142)
73 PF12174 RST: RCD1-SRO-TAF4 (R 25.2 1.4E+02 0.0031 24.3 4.5 47 392-439 11-57 (70)
74 PLN03218 maturation of RBCL 1; 25.1 1.6E+03 0.034 29.0 17.8 25 733-757 686-710 (1060)
75 PF13646 HEAT_2: HEAT repeats; 24.7 77 0.0017 26.4 3.1 62 695-760 13-74 (88)
76 smart00389 HOX Homeodomain. DN 24.5 1.4E+02 0.0029 22.5 4.2 48 814-871 7-54 (56)
77 PF09768 Peptidase_M76: Peptid 24.2 3.4E+02 0.0073 26.6 7.7 26 294-319 67-92 (173)
78 KOG2661 Peptidase family M48 [ 23.2 2E+02 0.0043 30.9 6.1 19 295-313 272-290 (424)
79 PF05596 Taeniidae_ag: Taeniid 23.2 2.7E+02 0.0058 22.3 5.5 49 815-867 12-60 (64)
80 KOG2719 Metalloprotease [Gener 22.2 1E+02 0.0022 34.4 4.1 64 240-310 222-292 (428)
81 cd04272 ZnMc_salivary_gland_MP 21.7 1.7E+02 0.0037 29.8 5.5 13 298-310 145-157 (220)
82 PF09836 DUF2063: Uncharacteri 21.6 53 0.0011 28.4 1.5 29 399-427 55-83 (94)
83 PF01421 Reprolysin: Reprolysi 21.6 1E+02 0.0023 30.7 3.9 14 296-309 129-142 (199)
84 COG3590 PepO Predicted metallo 20.4 23 0.0005 40.5 -1.2 36 275-310 461-499 (654)
No 1
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-154 Score=1379.12 Aligned_cols=844 Identities=48% Similarity=0.781 Sum_probs=775.7
Q ss_pred ccCCCCcCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEeCCceeeEEEEeeccCCCCccccceeEEEe
Q 002859 3 EFKGQPRLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELV 82 (873)
Q Consensus 3 ~~~~~~rLp~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~ 82 (873)
++...+|||.+++|+||+|+|.|++....|.|++.|.+.+.++|+.|+||+.++.|.++.+...................
T Consensus 24 ~~~~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 103 (882)
T KOG1046|consen 24 KFPNEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEKE 103 (882)
T ss_pred cccccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCcccccccccccc
Confidence 33467899999999999999999999999999999999999999999999999999999997642211111111111111
Q ss_pred cCCeEEEEEeCCccCCc-eEEEEEEEEeeeCCCCcceEEeeecc-CCeeeeeeccCCCcccccccccccCCCCCceEEEE
Q 002859 83 EADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL-NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKI 160 (873)
Q Consensus 83 ~~~~~l~i~l~~~L~~g-~~~l~i~y~g~l~~~~~G~y~~~y~~-~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~ka~f~i 160 (873)
. .+.+.+.+++++.+| +|+|+|.|.|.+++++.|||+++|.+ .+.++++++|||||++||++|||||||++||+|+|
T Consensus 104 ~-~~~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~I 182 (882)
T KOG1046|consen 104 Q-EETLVFPLNETLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTI 182 (882)
T ss_pred c-ceEEEEEcccccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEE
Confidence 1 167888999999999 89999999999999999999999987 56669999999999999999999999999999999
Q ss_pred EEEeCCCCeEEecCCccce-eecCCeEEEEEecCCCccceEEEEEEeeeeeeeecccc---EEEEEeCCchhhHHHHHHH
Q 002859 161 TLDVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSD---VRVYCQVGKANQGKFALNV 236 (873)
Q Consensus 161 ~i~~p~~~~~~sn~~~~~~-~~~~~~~~~~f~~t~~ms~yl~a~~vg~f~~~~~~~~~---i~v~~~~~~~~~~~~~l~~ 236 (873)
+|.||++++|+||||+... ..++++++++|++||+||||+|||+||+|++.+..+++ +|+|++|+...++++|++.
T Consensus 183 tl~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~ 262 (882)
T KOG1046|consen 183 TLVHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEV 262 (882)
T ss_pred EEEecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHH
Confidence 9999999999999999976 45555999999999999999999999999999987764 9999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhcCccc
Q 002859 237 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 316 (873)
Q Consensus 237 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamen~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 316 (873)
+.++|++|+++||+|||+||+|+|++|+|.+|||||||||+|+|..+|+++..++..++++++.+||||+|||||||+||
T Consensus 263 ~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVT 342 (882)
T KOG1046|consen 263 ATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVT 342 (882)
T ss_pred HHHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhhhhhHHHHHHHHHHhhhCcchhHHHHHHHHHH-HHHhhcccCCCCCeeeecCCchhhhhhccceeechhhHH
Q 002859 317 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 395 (873)
Q Consensus 317 ~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~v 395 (873)
|+||+|+|||||||+|+++++++..+|+|..+++|+.+.+ .++..|+..++||+..++.++.+|++.||.++|.||++|
T Consensus 343 m~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasv 422 (882)
T KOG1046|consen 343 MKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASV 422 (882)
T ss_pred HhhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHH
Confidence 9999999999999999999999999999999999888777 579999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeCcEEEEEEEeecc
Q 002859 396 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLS 475 (873)
Q Consensus 396 l~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~G~P~v~v~~~~~~~~l~Q~rf~~ 475 (873)
||||+.++|++.|++||+.||.+|+|+|++++|||++|+...+.||+.+|+.|+.|+|||+|+|.++++.++++|+||..
T Consensus 423 lRML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~ 502 (882)
T KOG1046|consen 423 LRMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQERFLS 502 (882)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCCEEEEehhhhcc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred CCC--CCCCeeEEEEEEEEccccceeeEEeeccceEEEecccccccccCCCCCCceEEeCCCceeEEEEEcCHHHHHHHH
Q 002859 476 SGS--PGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLG 553 (873)
Q Consensus 476 ~~~--~~~~~w~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~ 553 (873)
... .....|+||++|.+.+.+.....++..++.++.++. .+ +||++|.++.|||||+||+++|+.|+
T Consensus 503 ~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~--~wi~~N~~~~g~yRV~Yd~~~w~~l~ 571 (882)
T KOG1046|consen 503 DPDPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------SD--QWIKVNLEQTGYYRVNYDDENWALLI 571 (882)
T ss_pred CCCccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------CC--eEEEEeCCcceEEEEEeCHHHHHHHH
Confidence 764 234599999999987655445678887777777753 33 69999999999999999999999999
Q ss_pred HHHHh-cCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHH
Q 002859 554 YAIEM-KQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFF 632 (873)
Q Consensus 554 ~~l~~-~~i~~~~Ra~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 632 (873)
++|.. ..+++.||++||+|+|+|+++|+++++.+|+++.||.+|++|.||..++..+..+.. +.. .+.+..++.|+
T Consensus 572 ~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~~~--~~~~~~~~~~~ 648 (882)
T KOG1046|consen 572 EQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-LED--TEIYSKFKEFV 648 (882)
T ss_pred HHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-ccc--chHHHHHHHHH
Confidence 99976 689999999999999999999999999999999999999999999999999999888 444 45889999999
Q ss_pred HHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhheeeeeeccc
Q 002859 633 ISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSA 712 (873)
Q Consensus 633 ~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~~~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~ 712 (873)
.+++.+.++++||.....++ ....+|..++..||..|+++|.+.|.++|..|+.+ +..||+++|.+|||.+ +++
T Consensus 649 ~~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~--~~~ip~~lr~~vy~~~---~~~ 722 (882)
T KOG1046|consen 649 KKLILPIFEKLGWSDGADSS-LDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAG--TNPIPPDLREVVYCTA---VQF 722 (882)
T ss_pred HHHHHHHHHHhcCCccccch-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc--CCCCChhhhhhhhhHH---HHh
Confidence 99999999999998754443 78899999999999999999999999999999987 7789999999888765 458
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-CcCCcccceeeee-eccc--cHHHHHHHHHHH
Q 002859 713 SDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLS-SEVRSQDAVYGLA-VSIE--GRETAWKWLKDN 788 (873)
Q Consensus 713 g~~~~~~~l~~~y~~s~~~~ek~~~l~aL~cs~d~~ll~~~L~~~l~-~~i~~qd~~~~~~-v~~~--g~~~~~~fl~~n 788 (873)
|+++.|++++++|+++..+.||..++.||+|+++++.++++|++.++ ..++.||....+. ++.| |..+||+|++.|
T Consensus 723 g~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~~~~~~~~~~~g~~~a~~~~~~n 802 (882)
T KOG1046|consen 723 GTEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRLLDLAFDAENVRDQDVLTLLQGISGNPRGVELAWKFLQDN 802 (882)
T ss_pred cCHhHHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHHHHHhcccccccchhHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888 4699999999988 7776 999999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHhhccCCCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHh
Q 002859 789 WDHISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKEL 868 (873)
Q Consensus 789 ~~~i~~~~~~~~~l~~~i~~~~~~~~t~~~l~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~i~~wL~~~ 868 (873)
|+.+.++|++.+.+++++..++..+.++.+++++++||...+..+..+++++++|+++.|+.|.+++.+. +.+||.+.
T Consensus 803 ~~~l~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~le~~~~ni~W~~~~~~~--l~~~l~~~ 880 (882)
T KOG1046|consen 803 WKELLNRYGNNFELSRLISFITEPFATEEKLDEVEKFFADIPKTGAERALQQALETVKANIQWVERNEEN--LTQWLLEA 880 (882)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhHHHhhHHH--HHHHHHHh
Confidence 9999999996688999999999999999999999999999877666899999999999999999999999 99999875
Q ss_pred h
Q 002859 869 A 869 (873)
Q Consensus 869 ~ 869 (873)
.
T Consensus 881 ~ 881 (882)
T KOG1046|consen 881 L 881 (882)
T ss_pred c
Confidence 3
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=4.3e-126 Score=1143.64 Aligned_cols=793 Identities=23% Similarity=0.325 Sum_probs=666.4
Q ss_pred CceeeEEEEEEEecCCCC--eEEEEEEEEEEEECCCCEEEEEeCCceeeEEEEeeccCCCCccccceeEEEecCCeEEEE
Q 002859 13 FAVPKRYDIRLTPDLTSC--KFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (873)
Q Consensus 13 ~v~p~~Y~l~l~~~~~~~--~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (873)
.+.+.||+|.|+++.+.. .+.|+++|+|++.++++.|.||+.+++|.+|++++. .......++ ..|
T Consensus 13 ~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~----------~~~~~~~~~--~~i 80 (831)
T TIGR02412 13 LITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGI----------LDVAPVYDG--SRI 80 (831)
T ss_pred hccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCc----------ccCccccCC--CEE
Confidence 467999999999986544 558999999999888999999999999999999641 111121222 346
Q ss_pred EeCCccCCceEEEEEEEEeeeCCCCcceEEeeeccCCeeeeeeccCCCcccccccccccCCCCCceEEEEEEEeCCCCeE
Q 002859 91 EFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVA 170 (873)
Q Consensus 91 ~l~~~L~~g~~~l~i~y~g~l~~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~ka~f~i~i~~p~~~~~ 170 (873)
.++. |.+|.++|+|.|++.+++.+.|+|+..+..+| +++++|||||.+||+||||||||++||+|+++|++|++|+|
T Consensus 81 ~l~~-l~~g~~~l~i~~~~~~~~~~~Gl~~~~~~~~g--~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v 157 (831)
T TIGR02412 81 PLPG-LLTGENTLRVEATRAYTNTGEGLHRFVDPVDG--EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTV 157 (831)
T ss_pred EccC-CCCCceEEEEEEEEEecCCCceEEEEEeCCCC--eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceE
Confidence 6665 77888999999999999999999996554445 37889999999999999999999999999999999999999
Q ss_pred EecCCccceeecCCeEEEEEecCCCccceEEEEEEeeeeeeeecccc--EEEEEeCCchhh--HHHHHHHHHHHHHHHHH
Q 002859 171 LSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSD--VRVYCQVGKANQ--GKFALNVAVKTLELYKE 246 (873)
Q Consensus 171 ~sn~~~~~~~~~~~~~~~~f~~t~~ms~yl~a~~vg~f~~~~~~~~~--i~v~~~~~~~~~--~~~~l~~~~~~l~~~e~ 246 (873)
+|||++......++.++++|++|||||||++||++|+|..++....+ +++|++|+..+. ++++++.+.++|++||+
T Consensus 158 ~sNg~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~ 237 (831)
T TIGR02412 158 ISNSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQDESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHR 237 (831)
T ss_pred ECCCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEeecCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999877655566778899999999999999999999998865444 899999987653 67899999999999999
Q ss_pred HhCCCCCCCCcceeecCCCCcccccccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhcCccccCccchhhhh
Q 002859 247 YFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLN 326 (873)
Q Consensus 247 ~fg~~yp~~k~d~v~~p~~~~gamen~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~ 326 (873)
+||+|||++|+|+|++|+|..|||||||+|+|+|. +++++. .+...++.++.+|+||+|||||||+|||+||+|+|||
T Consensus 238 ~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~-~l~~~~-~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLn 315 (831)
T TIGR02412 238 KFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAE-ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLN 315 (831)
T ss_pred HhCCCCCcccCCEEEcCCCCCCcccccceeeechh-hccCCc-CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHH
Confidence 99999999999999999999999999999999999 555544 3456677899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhCcchhHHHHHHHHHH-HHHhhcccCCCCCeeeecCCchhhhhhccceeechhhHHHHHHHHhhCH
Q 002859 327 EGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGA 405 (873)
Q Consensus 327 EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~ 405 (873)
||||+|++++++++.+|++..+.+|..... .++..|+..++||+..++.++.++...|+.++|.||++||+||+..||+
T Consensus 316 EGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGe 395 (831)
T TIGR02412 316 ESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVGE 395 (831)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCH
Confidence 999999999999999999999888876554 6688899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEe--CcEEE-EEEEeeccCCCCCCC
Q 002859 406 ECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVK--EEKLE-LEQSQFLSSGSPGDG 482 (873)
Q Consensus 406 ~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~G~P~v~v~~~--~~~~~-l~Q~rf~~~~~~~~~ 482 (873)
+.|+++||.|+++|+|+|++++|||+++++++|.++++||++|++|+|+|+|+|++. ++.+. +.|.+ .+ ...
T Consensus 396 e~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~---~~--~~~ 470 (831)
T TIGR02412 396 EAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPES---SG--PPR 470 (831)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEec---CC--CCC
Confidence 999999999999999999999999999999999999999999999999999999875 34444 22221 11 124
Q ss_pred eeEEEEEEEEcccccee-----eEEeeccceEEEecccccccccCCCCCCceEEeCCCceeEEEEEcCHHHHHHHHHHHH
Q 002859 483 QWIVPITLCCGSYDVCK-----NFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIE 557 (873)
Q Consensus 483 ~w~iPl~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~l~ 557 (873)
.|.|||++....+.... .+++...... ++... ..... +||++|.++.|||||+||+++|+.|.++|.
T Consensus 471 ~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~--~~v~~N~~~~gyyrv~yd~~~~~~l~~~l~ 542 (831)
T TIGR02412 471 PHRIAIGLYDLDRDDLRRTTLVPLTISGERTA--VPQLV----GKRAP--ALVLLNDDDLTYAKVRLDPTSFDTVLAALS 542 (831)
T ss_pred CeeEEEeeeecCCCcceeeeEEEEEEecCcee--ehhhc----CCCCC--CEEEEeCCCcEEEEEECCHHHHHHHHHHhh
Confidence 69999998654332211 1333332221 22110 01133 799999999999999999999999999985
Q ss_pred hcCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHH-HhccCCCcHHHHHHHHHHHH-HHHHHHhccChhHHHHHHHHHHHH
Q 002859 558 MKQLSETDRFGILDDHFALCMARQQTLTSLLTLM-ASYSEETEYTVLSNLITISY-KIGRIAADARPELLDYLKQFFISL 635 (873)
Q Consensus 558 ~~~i~~~~Ra~li~D~~~la~~g~l~~~~~l~l~-~~l~~E~~~~~w~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~l 635 (873)
. ..++.+|++|++|+|+++++|.++++.+|+++ .||++|+++.||..++..+. .+...+.. ++.+..++.|+.++
T Consensus 543 ~-~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~ 619 (831)
T TIGR02412 543 K-LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYAP--IADRPALLAVAALA 619 (831)
T ss_pred h-CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 2 33799999999999999999999999999955 89999999999999999999 88887744 45788899999888
Q ss_pred HHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhheeeeeecccCCH
Q 002859 636 FQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDR 715 (873)
Q Consensus 636 ~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~~~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~ 715 (873)
+.+.... ++++.+.+++. +..++|..|+++|++.++++|+.|+++ ..||||+|..|||++. .++.
T Consensus 620 ~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~dlr~~v~~~~~----~~~~ 684 (831)
T TIGR02412 620 CRSLRRA-------MESGPDFQLRW-LRALALTATDPDSLRRLLSLLDGKIKG---LALDPDLRWRIIARLA----ALGF 684 (831)
T ss_pred HHHHHhc-------cCCCccHHHHH-HHHHHHhcCCHHHHHHHHHHHhCCCCC---cccCHhHHHHHHHHHH----hcCC
Confidence 8764422 23333334433 555799999999999999999998754 3799999999988544 3577
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC-cCCcccceeeee-eccc-cHHHHHHHHHHHHHHH
Q 002859 716 SGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-VSIE-GRETAWKWLKDNWDHI 792 (873)
Q Consensus 716 ~~~~~l~~~y~~s~~~~ek~~~l~aL~cs~d~~ll~~~L~~~l~~-~i~~qd~~~~~~-v~~~-g~~~~~~fl~~n~~~i 792 (873)
.+|+.++++|++++++++|..++.||||++||+++++.+..++++ .++.||...++. ++.. +++++|+|+++||+.|
T Consensus 685 ~~~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 764 (831)
T TIGR02412 685 IDADDIAAELERDNTASGEEHAAAARAARPDAAAKREAWQKLVTTDALPNSKQRAIIEGFWQPEQALLLAAYAERYFANL 764 (831)
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCCHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999767766655 589999988888 7655 9999999999999999
Q ss_pred HHHhCC-CcchHHHHHHhhc--cCCCHHHHHHHHHHhhc--CCCchHHHHHHHHHHHHHHHHHHHH
Q 002859 793 SKTWGS-GFLITRFISSIVS--PFASYEKVREVEEFFSS--RCKPYIARTLRQSIERVQINAKWVE 853 (873)
Q Consensus 793 ~~~~~~-~~~l~~~i~~~~~--~~~t~~~l~~~~~Ff~~--~~~~~~~~~~~~~le~i~~ni~W~~ 853 (873)
.++++. +..+.+.+...+. .+++++.++++++||++ +..++..|.+.++.+.++.++++++
T Consensus 765 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~d~~~r~~~~~~ 830 (831)
T TIGR02412 765 ADIWKRRGPAIAQAISRGLFPATAVNYDTLATADKWLRSQADASPGLRRTLLERRDAAERALRARE 830 (831)
T ss_pred HHHHHhCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhHHHHHHHhhc
Confidence 999975 4556655555444 89999999999999974 3345889999999999999998865
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-93 Score=855.45 Aligned_cols=813 Identities=30% Similarity=0.476 Sum_probs=658.1
Q ss_pred cCCCCcee-eE--EEEEEEecCC--CCeEEEEEEEEEEE--ECCCCEEEEEeCCceeeEEEEeeccCCCCccccceeEEE
Q 002859 9 RLPKFAVP-KR--YDIRLTPDLT--SCKFGGSVAIDVDV--VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL 81 (873)
Q Consensus 9 rLp~~v~p-~~--Y~l~l~~~~~--~~~~~G~v~I~~~~--~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~ 81 (873)
.++..+.| .+ |++.|+++.. +..|+|+++|++.. ..+...|+||+.+|+|.++.+++.. ... .+.+
T Consensus 12 ~~~~~~~~~~~~i~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~------~~~-~~~~ 84 (859)
T COG0308 12 ALSLDYRPPEYAIYDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKA------LTA-WYRL 84 (859)
T ss_pred cccccCCCccccccceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCcc------ccc-cccc
Confidence 44555555 77 7777766554 48999999999987 3444459999999999999998731 111 2333
Q ss_pred ecCCeEEEEEeCCc--c---CCceEEEEEEEEeeeC-CCCcceEEeeeccCCeeeeeeccCCCcccccccccccCCCCCc
Q 002859 82 VEADEILVLEFAET--L---PTGMGVLAIGFEGVLN-DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACK 155 (873)
Q Consensus 82 ~~~~~~l~i~l~~~--L---~~g~~~l~i~y~g~l~-~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~k 155 (873)
+.+ .+.+....+ + .++...+.+.+++... +.+.|+|++.+.. ..+++||||+.+||+||||+|+|+.|
T Consensus 85 ~~~--~~~i~~~~~~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~~~----~~~~~TQ~Ea~~aR~~fpc~D~P~~k 158 (859)
T COG0308 85 DGD--ALTITVAPPIPERSERPFTLAITYEFTGPVSNDTLEGLYRSGYGG----KPYLITQCEAEGARRIFPCIDEPDVK 158 (859)
T ss_pred cCc--cceeeeccccccccCCCccEEEEEEecccccCccccceeecCCCC----CeeEEeecccCCCceeeecCCCCCCc
Confidence 333 333333222 2 2346778888888777 7788999987643 67889999999999999999999999
Q ss_pred eEEEEEEEeCCCCeEEecCCccceee-cCCeEEEEEecCCCccceEEEEEEeeeeeeeeccc----c--EEEEEeCCchh
Q 002859 156 ATFKITLDVPSELVALSNMPVIDEKV-DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTS----D--VRVYCQVGKAN 228 (873)
Q Consensus 156 a~f~i~i~~p~~~~~~sn~~~~~~~~-~~~~~~~~f~~t~~ms~yl~a~~vg~f~~~~~~~~----~--i~v~~~~~~~~ 228 (873)
|+|+++|..++++.++|||+...... .+++++++|+.++||||||+|+++|+|.+++.... . ++||++++...
T Consensus 159 atf~~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~ 238 (859)
T COG0308 159 ATFTLTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLD 238 (859)
T ss_pred ceeEEEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchh
Confidence 99999999999999999999988743 35689999999999999999999999998887653 3 89999999899
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeccccccccCCCChhHHHHHHHHHHHHHHHH
Q 002859 229 QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 308 (873)
Q Consensus 229 ~~~~~l~~~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamen~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaH 308 (873)
.++++++.+.++++|||++||+|||+++ ++|++|+|++|||||||+++|++.++|.++..++....++++.+|+||+||
T Consensus 239 ~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaH 317 (859)
T COG0308 239 RAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAH 317 (859)
T ss_pred hhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999998888888889999999999999
Q ss_pred HHhcCccccCccchhhhhhhHHHHHHHHHHhhhCc-chhHHHHHHHHHHH-HHhhcccCCCCCeeeecCCchhhhhhccc
Q 002859 309 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECTE-GLRLDGLAESHPIEVEVNHTGEIDEIFDA 386 (873)
Q Consensus 309 qWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~D~~~~~~pi~~~~~~~~~~~~~f~~ 386 (873)
|||||+|||+||+++|||||||+|+++.+.+.++| .|..++.+...... ++..|+...+||+...+.+|.++++.||.
T Consensus 318 qWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~ 397 (859)
T COG0308 318 QWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDA 397 (859)
T ss_pred hcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcch
Confidence 99999999999999999999999999999999999 89999888766664 78889999999999999999999999999
Q ss_pred eeechhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeCc-E
Q 002859 387 ISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEE-K 465 (873)
Q Consensus 387 i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~G~P~v~v~~~~~-~ 465 (873)
++|.||++|+|||+.++|++.|++||+.|+++|++++++++|||+++++++|+|+..+|..|++|+|||++.|+..++ .
T Consensus 398 i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q~G~P~l~v~~~~~~~ 477 (859)
T COG0308 398 IVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQAGYPVLTVSVRYDDF 477 (859)
T ss_pred hhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhCCCCCceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887 7
Q ss_pred EEEEEEeeccCCCCCCCeeEEEEEEEEccccceeeEEeeccceEEEecccccccccCCCCCCceEEeCCCceeEEEEEcC
Q 002859 466 LELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYD 545 (873)
Q Consensus 466 ~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd 545 (873)
++++|.||...+......|.||+.+...+........+.+...++.+.... ..+- .-+++|....++|++.|+
T Consensus 478 ~~l~~~q~~~~~~~~~~~~~iPl~~~~~~~~~~~~~~~~~~~~t~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~y~ 550 (859)
T COG0308 478 FKLTQKQFTPPGQEEKRPWPIPLAIKLLDGGGVKVLLLTEGEQTVTFELVG-----IPPF--PSLKVNDSAPVFYRVDYS 550 (859)
T ss_pred EEEEEEEeccCCCccCceeeeccEEEecCCCCceeeeeeccceEEEEeccc-----CCcc--ceeeccCCccceEEEecC
Confidence 999999998877333459999999988754422334445555566654311 0111 368899999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcHHHH-HHHHH-HHHHHHHHHhccChh
Q 002859 546 KDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVL-SNLIT-ISYKIGRIAADARPE 623 (873)
Q Consensus 546 ~~~w~~l~~~l~~~~i~~~~Ra~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w-~~~~~-~l~~l~~~~~~~~~~ 623 (873)
.+.|..++... ..+++.+|+.++.|..++..+|..+...++..+....++.....+ ..++. .+..|..... .+
T Consensus 551 ~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 625 (859)
T COG0308 551 DQSLSKLLQHD--PRLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVSLEQAFKSLLLALPSFAD---LE 625 (859)
T ss_pred HHHHHHHHhhh--hhhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccchh---hh
Confidence 99998886653 378899999999999999999999999999877765554444443 33333 2222222211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhh
Q 002859 624 LLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAY 703 (873)
Q Consensus 624 ~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~~~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy 703 (873)
..+.......+...+.++++....++.. .......+ +.++...+..+.+.+..+|..+-.. ...++|++|..+-
T Consensus 626 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 699 (859)
T COG0308 626 --KFIDPDAIDQLRDALVRLGAEAVADDLL-ALYHIGAL-SQSLYEEDASLAALRALRNACLERL--EKQEDPELRSLVV 699 (859)
T ss_pred --hhcCHHHHHHHHHHHHHHHHHhhcchHH-HHHHhhhh-ccccccccHHHHHHHHHHHHHHhhc--ccccChhHHHHHH
Confidence 4555666777778888888765433322 22222222 6778888999999999999988543 3458899998765
Q ss_pred eeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC-cCCcccceeeee-e-cc-ccHH
Q 002859 704 VAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-V-SI-EGRE 779 (873)
Q Consensus 704 ~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~~~l~aL~cs~d~~ll~~~L~~~l~~-~i~~qd~~~~~~-v-~~-~g~~ 779 (873)
..+.. ..+..+.+..+.+.|..+.....+..+..+.+....+..+.+.|..+..+ .+..|+...... . .. ++++
T Consensus 700 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (859)
T COG0308 700 KAYAA--AGNMTDALKALLEAYQSPTRAEALRDFADAFGRFPLVMDKWFALQAISPGDTVLEQDIGLMIHAAFEAPNPNE 777 (859)
T ss_pred HHHHH--hcChHHHHHHHHHhcccCChHHHHHHHHHHhcccccHHHHHHHHHhcCCCcchHHHHHHHHhhhhhhCCcchh
Confidence 55543 23444468999999999888899999999999999999999999998876 578888877776 3 32 3999
Q ss_pred HHHHHHHHHHH---HHHHHhCCCcchHHHHHHhhccCCCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 002859 780 TAWKWLKDNWD---HISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESI 855 (873)
Q Consensus 780 ~~~~fl~~n~~---~i~~~~~~~~~l~~~i~~~~~~~~t~~~l~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni~W~~~~ 855 (873)
+.|.|...||+ .+....|++......+......++....++++++|++....+...+.+.+++++|....++.+..
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~l~~~~ 856 (859)
T COG0308 778 ARWLYGTFAFENPALLHALDGSGYRFLGVIVLELNIFNPQLALRKIEEFLELKKLKALERLIREALETIAARERLSKDL 856 (859)
T ss_pred hHHHHHHHhhhchhhhhhhccccccccceEEEEeeccchhhHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999998 55556665533233233334678888899999999987665578899999999999998887654
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=3e-83 Score=759.04 Aligned_cols=706 Identities=21% Similarity=0.265 Sum_probs=503.5
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEeCCceeeEEEEeeccCCCCccccceeEEEecCCeEEEE
Q 002859 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (873)
Q Consensus 11 p~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (873)
|..+...||+|+|+++++...++|+++|+++..++...|+||+.+|+|.+|.+++. .+. ...+..+++.++|
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~------~~~--~~~~~~~~~~L~I 75 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGK------PLA--AGDYQLDDETLTI 75 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCE------ecC--cceEEEcCCEEEE
Confidence 55688899999999999999999999999998777778999999999999999652 111 1234555677888
Q ss_pred EeCCccCCceEEEEEEEEee--eCCCCcceEEeeeccCCeeeeeeccCCCcccccccccccCCCCCceEEEEEEEeCCC-
Q 002859 91 EFAETLPTGMGVLAIGFEGV--LNDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE- 167 (873)
Q Consensus 91 ~l~~~L~~g~~~l~i~y~g~--l~~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~ka~f~i~i~~p~~- 167 (873)
.. + ++.++|+|.|.+. .+..+.|+|++.| +++|||||.+||++|||||+|++||+|+++|++|++
T Consensus 76 ~~---~-~~~~~l~i~~~~~p~~n~~l~GlY~s~~--------~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~ 143 (863)
T TIGR02414 76 AS---V-PESFTLEIETEIHPEENTSLEGLYKSGG--------NFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKK 143 (863)
T ss_pred ee---C-CccEEEEEEEEeecccCCCCeEEEEeCC--------eEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCc
Confidence 74 2 3679999999764 4456889999753 568999999999999999999999999999999996
Q ss_pred C-eEEecCCccce-eecCCeEEEEEecCCCccceEEEEEEeeeeeeeecc----c-c--EEEEEeCCchhhHHHHHHHHH
Q 002859 168 L-VALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHT----S-D--VRVYCQVGKANQGKFALNVAV 238 (873)
Q Consensus 168 ~-~~~sn~~~~~~-~~~~~~~~~~f~~t~~ms~yl~a~~vg~f~~~~~~~----~-~--i~v~~~~~~~~~~~~~l~~~~ 238 (873)
| +++|||+++.. ...+++++++|+.++|||+||+||++|+|++++... + + +++|++|+..+.++++++.++
T Consensus 144 y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~ 223 (863)
T TIGR02414 144 YPVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLK 223 (863)
T ss_pred ceEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHH
Confidence 7 56899987765 345678889999999999999999999999987532 1 1 799999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhcCccccC
Q 002859 239 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTME 318 (873)
Q Consensus 239 ~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamen~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~ 318 (873)
++|++||++||+|||++|+++|++|+|..||||||||++|++..+|.++..++...++.+..+||||+|||||||+|||+
T Consensus 224 ~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~ 303 (863)
T TIGR02414 224 KAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCR 303 (863)
T ss_pred HHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeec
Confidence 99999999999999999999999999999999999999999999999998777777888999999999999999999999
Q ss_pred ccchhhhhhhHHHHHHHHHHhhhCcchh--HHHHHHHHHHHHHhhcccCCCCCeeeecCCchhhhhhccceeechhhHHH
Q 002859 319 WWTHLWLNEGFATWVSYLAADSLFPEWK--IWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 396 (873)
Q Consensus 319 ~w~d~WL~EGfa~y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl 396 (873)
||+++|||||||+|++..+.....+... +....... ...+..|+...+||+.. ....+++..|+.++|.||++||
T Consensus 304 ~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr-~~~f~~D~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~vL 380 (863)
T TIGR02414 304 DWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLR-AHQFPEDAGPMAHPVRP--ESYVEINNFYTATVYEKGAEVI 380 (863)
T ss_pred chhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhcccccccCCCCCC--cchhhHHhccchHHhHHHHHHH
Confidence 9999999999999999766555443211 11111100 02355688888888864 3456778889999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeC----c--EEEEEE
Q 002859 397 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQ 470 (873)
Q Consensus 397 ~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~G~P~v~v~~~~----~--~~~l~Q 470 (873)
|||+..||++.|++||+.|+++|++++++++|||+++++++|.|+.+|+ +|++|+|+|+|+|++++ + +++++|
T Consensus 381 rML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q 459 (863)
T TIGR02414 381 RMLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQ 459 (863)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999985 89999999999999863 2 466666
Q ss_pred EeeccCCCCCCCeeEEEEEEEEcc--ccc-----------eeeEEeeccceEEEecccccccccCCCCCCceEEeCCCce
Q 002859 471 SQFLSSGSPGDGQWIVPITLCCGS--YDV-----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 537 (873)
Q Consensus 471 ~rf~~~~~~~~~~w~iPl~~~~~~--~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 537 (873)
.+....+......|.|||.+..-+ +.. ...+.++.+++++.++.+. .. ..+-++.+.+
T Consensus 460 ~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~-------~~--p~~sl~r~fs 530 (863)
T TIGR02414 460 STPPTPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIA-------EK--PVPSLLRGFS 530 (863)
T ss_pred eCCCCCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCC-------CC--CeeeecCCCC
Confidence 543222333345899999996532 211 1235677788888887542 11 3577888888
Q ss_pred eEEEEEcCH--HHHHHHHHHHHhcCCChhhHHHHHHHHHHH-----HHcCC-CC-HHHHHHHHHhccCCC--cHHHHHHH
Q 002859 538 GFYRVKYDK--DLAARLGYAIEMKQLSETDRFGILDDHFAL-----CMARQ-QT-LTSLLTLMASYSEET--EYTVLSNL 606 (873)
Q Consensus 538 gyyRV~Yd~--~~w~~l~~~l~~~~i~~~~Ra~li~D~~~l-----a~~g~-l~-~~~~l~l~~~l~~E~--~~~~w~~~ 606 (873)
-+-++.|+. +.+..|...= .+.+.--+-+|-+-.-.-+ ...|. +. -..+++.+..+-.+. |...-..+
T Consensus 531 apv~l~~~~~~~~l~~l~~~d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~a~~ 609 (863)
T TIGR02414 531 APVNLEYPYSDEDLLLLLAHD-SDPFNRWEAGQRLARRVILANIARAQGGEELPVDPAFIDALGKLLNDPHLDAAFKALL 609 (863)
T ss_pred ceEEEeCCCCHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 888887764 3333332210 1122222212221111111 11232 21 244556555533222 33333222
Q ss_pred HHH--HHHHHHHHhccChh--------HHHHHHHHHHHHHHHHHHHcCCcc---CCCCCHHHHHHHHHHHHHHHhcCCHH
Q 002859 607 ITI--SYKIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLGHKE 673 (873)
Q Consensus 607 ~~~--l~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~il~~ac~~~~~~ 673 (873)
+.. ...|...+..-+++ ....+..-++..+..+|+++--.. ...+..-.+.||..+|.++|..+.++
T Consensus 610 l~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~ 689 (863)
T TIGR02414 610 LALPSEAYLAELMENIDPDALHAAREFLRAAIARQLADDLLRLYDALQENGPYSVDPAAAGRRALRNACLSYLSAADDAE 689 (863)
T ss_pred hcCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChh
Confidence 221 12222222111121 222333334444555666653111 11223345899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHH
Q 002859 674 TLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEV 753 (873)
Q Consensus 674 c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~~~l~aL~cs~d~~ll~~~ 753 (873)
..+.|.+.|++-- +. --|-+.+.+++..-....++..+..++++++....-+|--.+.|.+. .+..+.++
T Consensus 690 ~~~~~~~~~~~a~---~m-----td~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~--~~~~~~~v 759 (863)
T TIGR02414 690 IRNLALEQFKSAD---NM-----TDRLAALSALVHFESDFRERALAAFYQKWKDDPLVMDKWFALQATSP--RPDTLERV 759 (863)
T ss_pred HHHHHHHHHHhCC---CH-----HHHHHHHHHHhcCCChhHHHHHHHHHHHHCCCchhHHHHHHHHhCCC--cccHHHHH
Confidence 9999999987531 11 12332233332110011122355666666666666677777777543 44466665
Q ss_pred HHHhccC
Q 002859 754 LNFLLSS 760 (873)
Q Consensus 754 L~~~l~~ 760 (873)
-.+.-++
T Consensus 760 ~~l~~h~ 766 (863)
T TIGR02414 760 KALLQHP 766 (863)
T ss_pred HHHhcCC
Confidence 5554333
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=4.8e-82 Score=751.26 Aligned_cols=706 Identities=22% Similarity=0.291 Sum_probs=499.4
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEE-ECCCCEEEEEeCCceeeEEEEeeccCCCCccccceeEEEecCCeEEE
Q 002859 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILV 89 (873)
Q Consensus 11 p~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (873)
|..+...||+|+|+++++...++|+++|+... .++.+.|+||+.+|+|.+|.+++. .+.+. .+..+++.++
T Consensus 16 ~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~------~~~~~--~~~~~~~~L~ 87 (875)
T PRK14015 16 PPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQ------PLAPS--AYELDEEGLT 87 (875)
T ss_pred CCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCE------EcCcc--ceEEcCCEEE
Confidence 55588899999999999999999999999876 456789999999999999999652 11111 3444567888
Q ss_pred EEeCCccCCceEEEEEEEEeeeC--CCCcceEEeeeccCCeeeeeeccCCCcccccccccccCCCCCceEEEEEEEeCC-
Q 002859 90 LEFAETLPTGMGVLAIGFEGVLN--DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPS- 166 (873)
Q Consensus 90 i~l~~~L~~g~~~l~i~y~g~l~--~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~ka~f~i~i~~p~- 166 (873)
|.. + ++.++|+|.|++... ..+.|+|++.+ +++|||||.+||+||||+|+|++||+|+++|++|+
T Consensus 88 I~~---l-~~~~~l~I~y~~~P~~n~~l~Gly~s~~--------~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~ 155 (875)
T PRK14015 88 IEN---L-PDRFTLEIETEIDPEANTALEGLYRSGG--------MFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKA 155 (875)
T ss_pred Eec---C-CccEEEEEEEEEecCCCCCceeeEEECC--------EEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccc
Confidence 872 3 346899999987653 45789998642 57899999999999999999999999999999999
Q ss_pred CC-eEEecCCcccee-ecCCeEEEEEecCCCccceEEEEEEeeeeeeeecc----c-c--EEEEEeCCchhhHHHHHHHH
Q 002859 167 EL-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHT----S-D--VRVYCQVGKANQGKFALNVA 237 (873)
Q Consensus 167 ~~-~~~sn~~~~~~~-~~~~~~~~~f~~t~~ms~yl~a~~vg~f~~~~~~~----~-~--i~v~~~~~~~~~~~~~l~~~ 237 (873)
.| +++|||+++... ..+++++++|+.++|||+||+||++|+|+.++... + + +++|++|+..+.++++++.+
T Consensus 156 ~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~ 235 (875)
T PRK14015 156 KYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSL 235 (875)
T ss_pred cCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHH
Confidence 48 679999988774 46778899999999999999999999999987431 1 2 79999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhcCcccc
Q 002859 238 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 317 (873)
Q Consensus 238 ~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamen~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~ 317 (873)
+++|++||++||+|||++|+++|++|+|+.||||||||++|++..+|.++...+...++.+..+||||+|||||||+|||
T Consensus 236 ~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~ 315 (875)
T PRK14015 236 KKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTC 315 (875)
T ss_pred HHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCccee
Confidence 99999999999999999999999999999999999999999999999988766677777899999999999999999999
Q ss_pred CccchhhhhhhHHHHHHHHHHhhhCc-chhHH-HHHHHHHHHHHhhcccCCCCCeeeecCCchhhhhhccceeechhhHH
Q 002859 318 EWWTHLWLNEGFATWVSYLAADSLFP-EWKIW-TQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 395 (873)
Q Consensus 318 ~~w~d~WL~EGfa~y~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~D~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~v 395 (873)
+||+|+|||||||+|++..+.....+ .+... ...... ...+..|+...+||+... +..+++..|+.++|.||++|
T Consensus 316 ~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~-~~~~~~D~~~~a~pi~p~--~~~~i~~~f~~~~Y~KGA~v 392 (875)
T PRK14015 316 RDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLR-AAQFAEDAGPMAHPVRPD--SYIEINNFYTATVYEKGAEV 392 (875)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hhcccccccccCCCCCCc--chhhHHhcccchhhhHHHHH
Confidence 99999999999999998776555432 21111 111100 122445777777887542 34567889999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeC----c--EEEEE
Q 002859 396 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELE 469 (873)
Q Consensus 396 l~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~G~P~v~v~~~~----~--~~~l~ 469 (873)
||||+..||++.|+++|+.|+++|++++++++|||+++++++|.|+.+|+ +|++|+|+|+|+|+++. + +++++
T Consensus 393 LrMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~ 471 (875)
T PRK14015 393 IRMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLS 471 (875)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999986 89999999999999863 3 46666
Q ss_pred EEeeccCCCCCCCeeEEEEEEEEcc--ccc----------eeeEEeeccceEEEecccccccccCCCCCCceEEeCCCce
Q 002859 470 QSQFLSSGSPGDGQWIVPITLCCGS--YDV----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 537 (873)
Q Consensus 470 Q~rf~~~~~~~~~~w~iPl~~~~~~--~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 537 (873)
|.+....+......|.|||.+..-+ +.. ...+.++.+++++.++.+. .. ..+.++.+.+
T Consensus 472 Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~q~f~f~~~~------~~---p~~s~~r~fs 542 (875)
T PRK14015 472 QSTPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTEAEQTFTFENVA------ER---PVPSLLRGFS 542 (875)
T ss_pred EeCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcCCeeEEEEcCCC------CC---ceEEecCCCC
Confidence 7643322333445899999996422 221 1236677788889887532 12 3478888888
Q ss_pred eEEEEEcCH--HHHHHHHHHHHhcCCChhhHHHHHHHHHHH--HHc-CC-CC-HHHHHHHHHhcc-C-CCcHHHHHHHHH
Q 002859 538 GFYRVKYDK--DLAARLGYAIEMKQLSETDRFGILDDHFAL--CMA-RQ-QT-LTSLLTLMASYS-E-ETEYTVLSNLIT 608 (873)
Q Consensus 538 gyyRV~Yd~--~~w~~l~~~l~~~~i~~~~Ra~li~D~~~l--a~~-g~-l~-~~~~l~l~~~l~-~-E~~~~~w~~~~~ 608 (873)
.+-++.|+. +.+..|...= .+.++--+-+|-+..-.-+ ... |. +. -..+++.++.+- + +.|...-..++.
T Consensus 543 apv~~~~~~~~~~l~~l~~~d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~ 621 (875)
T PRK14015 543 APVKLEYDYSDEDLLFLMAHD-SDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRAVLLDESLDPAFAAELLT 621 (875)
T ss_pred CcEEEeCCCCHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHcc
Confidence 888888764 3333322210 1222222222222221111 111 22 21 234555555432 2 233333333222
Q ss_pred HH--HHHHHHHhccChh--------HHHHHHHHHHHHHHHHHHHcCCccC---CCCCHHHHHHHHHHHHHHHhcCCHHHH
Q 002859 609 IS--YKIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLGWDSK---PGESHLDALLRGEIFTALALLGHKETL 675 (873)
Q Consensus 609 ~l--~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~lg~~~~---~~~~~~~~~lr~~il~~ac~~~~~~c~ 675 (873)
.. ..|...+..-+++ ....+..-+...+..+|+++--... ..+..-.+.||..+|.+++..+.++..
T Consensus 622 lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~ 701 (875)
T PRK14015 622 LPSEAELAEQMEVIDPDAIHAAREALRRALATALKDELLALYEALQTDGPYSPDAEAAGRRALRNVCLSYLAAADDEEAA 701 (875)
T ss_pred CCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHH
Confidence 21 1222222111111 2222333333444555555521110 123344589999999999999999888
Q ss_pred HHHHHHHHHHhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 002859 676 NEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLN 755 (873)
Q Consensus 676 ~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~~~l~aL~cs~d~~ll~~~L~ 755 (873)
+.|.+.|+.-- +. --|-+.+.++...-....++..+..++++++....-+|--.+.|.+-..| .+.++-.
T Consensus 702 ~~~~~~~~~a~---~m-----td~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~--~~~~v~~ 771 (875)
T PRK14015 702 ELAEAQFDQAD---NM-----TDRLAALSALVNADLPERDEALADFYDRWKDDPLVMDKWFALQATSPAPD--TLERVRA 771 (875)
T ss_pred HHHHHHHhhCC---CH-----HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcC--HHHHHHH
Confidence 88988887431 11 12222222222210011122355566666666666677777777654444 5555544
Q ss_pred HhccC
Q 002859 756 FLLSS 760 (873)
Q Consensus 756 ~~l~~ 760 (873)
+.-++
T Consensus 772 l~~hp 776 (875)
T PRK14015 772 LMQHP 776 (875)
T ss_pred HhcCC
Confidence 43333
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=7e-76 Score=679.88 Aligned_cols=425 Identities=24% Similarity=0.388 Sum_probs=348.6
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECC-CCEEEEEeCCceeeEEEEeeccCCCCccccceeEEE----ecCC
Q 002859 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGD-TKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL----VEAD 85 (873)
Q Consensus 11 p~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~-~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~----~~~~ 85 (873)
|..++|.||+|+|++|+++.+|+|+|+|++++..+ ++.|+||+.+|+|++|.+++. ...+.. +..+
T Consensus 8 ~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~---------~~~~~~~~~~~~~g 78 (601)
T TIGR02411 8 YKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGL---------PADFAIGERKEPLG 78 (601)
T ss_pred CCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCc---------ccceEeccccCCCC
Confidence 67899999999999999999999999999999765 688999999999999988652 112222 2346
Q ss_pred eEEEEEeCCccCCc-eEEEEEEEEeeeCCCCcceEEeeec-cCCeeeeeeccCCCcccccccccccCCCCCceEEEEEEE
Q 002859 86 EILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYE-LNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLD 163 (873)
Q Consensus 86 ~~l~i~l~~~L~~g-~~~l~i~y~g~l~~~~~G~y~~~y~-~~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~ka~f~i~i~ 163 (873)
+.++|.+++++.+| .++|+|.|+|..+ ..|++...+. .+|..++++.|||||++||+||||||+|++||+|+++|+
T Consensus 79 ~~L~I~l~~~l~~g~~~~l~I~Y~~~~~--~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~ 156 (601)
T TIGR02411 79 SPLTISLPIATSKNKELVLNISFSTTPK--CTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVE 156 (601)
T ss_pred CeEEEEeCCccCCCceEEEEEEEeecCC--CceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEEEEe
Confidence 78999999999999 9999999999753 4577544332 356777888999999999999999999999999999999
Q ss_pred eCCCCeEEecCCccceeecCCeEEEEEecCCCccceEEEEEEeeeeeeeeccccEEEEEeCCchhhHHHHHH-HHHHHHH
Q 002859 164 VPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDVRVYCQVGKANQGKFALN-VAVKTLE 242 (873)
Q Consensus 164 ~p~~~~~~sn~~~~~~~~~~~~~~~~f~~t~~ms~yl~a~~vg~f~~~~~~~~~i~v~~~~~~~~~~~~~l~-~~~~~l~ 242 (873)
+| +.|++||....... ++..+++|+.++|||+||+||+||+|+..+. ...+++|++|+....+++++. .+.++|+
T Consensus 157 ~P--~~av~sg~~~~~~~-~~~~~~~F~~t~pmptYLia~avG~~~~~~~-g~~~~v~~~p~~~~~~~~~~~~~~~~~l~ 232 (601)
T TIGR02411 157 SP--LPVLMSGIPDGETS-NDPGKYLFKQKVPIPAYLIALASGDLASAPI-GPRSSVYSEPEQLEKCQYEFEHDTENFIK 232 (601)
T ss_pred eC--cceeccCCcccccc-CCCceEEEEeCCCcchhhheeeeccceeccc-CCceEEEccchhHHHHHHHHHHhHHHHHH
Confidence 99 88887665544332 3445788999999999999999999987643 223899999998888888888 9999999
Q ss_pred HHHHHhCCCCCCCCcceeec-CCCCcccccccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhcCccccCccc
Q 002859 243 LYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 321 (873)
Q Consensus 243 ~~e~~fg~~yp~~k~d~v~~-p~~~~gamen~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 321 (873)
++|+++| |||++|+|+|++ |+|++||||||| ++|.+..++.+.. ....+||||||||||||+||++||+
T Consensus 233 ~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~-ltf~~~~ll~~d~--------s~~~viaHElAHqWfGNlVT~~~W~ 302 (601)
T TIGR02411 233 TAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPN-LTFATPTLIAGDR--------SNVDVIAHELAHSWSGNLVTNCSWE 302 (601)
T ss_pred HHHHhCC-CCcCccceEEEecCccccccccccc-ceeeccccccCCh--------hhhhhHHHHHHhhccCceeecCCch
Confidence 9999876 999999999987 799999999999 5787777776432 2357999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHhhhCcchhHH-HHHHH-HHH-HHHhhcccCCCCCeeeecCCch--hhhhhccceeechhhHHH
Q 002859 322 HLWLNEGFATWVSYLAADSLFPEWKIW-TQFLD-ECT-EGLRLDGLAESHPIEVEVNHTG--EIDEIFDAISYRKGASVI 396 (873)
Q Consensus 322 d~WL~EGfa~y~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~D~~~~~~pi~~~~~~~~--~~~~~f~~i~Y~Kg~~vl 396 (873)
|+|||||||+|++++++++++|++... ..+.. ..+ ..+ +.+...+|+...+.+.. +++..|+.++|.||+++|
T Consensus 303 d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~KGa~~L 380 (601)
T TIGR02411 303 HFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESV--KTLGEDPEYTKLVVDLKDNDPDDAFSSVPYEKGFNFL 380 (601)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHH--HhhcCCCCCCcccccCCCCChhhhccccchhhHHHHH
Confidence 999999999999999999999986431 11111 111 112 22334455554433322 568899999999999999
Q ss_pred HHHHHhhC-HHHHHHHHHHHHHHhccCCCChHHHHHHHHhcc-----CCCHHHH-HHHhhcCCCcceEEEEEe
Q 002859 397 RMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGS-----GEPVNKL-MNSWTKQKGYPVISVKVK 462 (873)
Q Consensus 397 ~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~-----~~~l~~~-~~~W~~~~G~P~v~v~~~ 462 (873)
+||+..|| ++.|+++||.|+++|+|++++++|||+++.++. +.++..+ |+.|++++|+|.+.++.+
T Consensus 381 ~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 381 FYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 99999999 999999999999999999999999999998763 2456666 899999999999876544
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=8.2e-74 Score=645.54 Aligned_cols=382 Identities=46% Similarity=0.819 Sum_probs=341.3
Q ss_pred cCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEeCCceeeEEEEeeccCCCCccccceeEEEecCCeEE
Q 002859 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEIL 88 (873)
Q Consensus 9 rLp~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l 88 (873)
|||.+++|.||+|.|++++++..|+|+++|++++.++++.|+||+.+++|.++.+.+.... .......+.++..++.+
T Consensus 1 RLp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~--~~~~~~~~~~~~~~~~l 78 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSS--SEYKSSPFEYDDENEKL 78 (390)
T ss_dssp S--TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECS--CTECCEEEEEECCBTEE
T ss_pred CCCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCcccc--ccccccceeecccccee
Confidence 8999999999999999999999999999999999999999999999999999999764221 11122337888888999
Q ss_pred EEEeCCccCCc-eEEEEEEEEeeeCCCCcceEEeeecc--CCeeeeeeccCCCcccccccccccCCCCCceEEEEEEEeC
Q 002859 89 VLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL--NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVP 165 (873)
Q Consensus 89 ~i~l~~~L~~g-~~~l~i~y~g~l~~~~~G~y~~~y~~--~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~ka~f~i~i~~p 165 (873)
.|.+++++.+| .|+|+|.|+|.++++..|+|++.|.+ ++...++++||+||.+||+||||||+|.+||+|+++|++|
T Consensus 79 ~I~l~~~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p 158 (390)
T PF01433_consen 79 TITLPKPLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHP 158 (390)
T ss_dssp EEEEEEECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEE
T ss_pred ehhhhhhcccCcEEEEEEEEeecccccccccccceeecccccccCCceeecccccccceeeeeeccCCccceEEEeeecc
Confidence 99999999999 79999999999999999999999976 6788899999999999999999999999999999999999
Q ss_pred CCCeEEecCCcccee-ecCCeEEEEEecCCCccceEEEEEEeeeeeeeecccc---EEEEEeCCchhhHHHHHHHHHHHH
Q 002859 166 SELVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSD---VRVYCQVGKANQGKFALNVAVKTL 241 (873)
Q Consensus 166 ~~~~~~sn~~~~~~~-~~~~~~~~~f~~t~~ms~yl~a~~vg~f~~~~~~~~~---i~v~~~~~~~~~~~~~l~~~~~~l 241 (873)
++++|+|||++.+.. ..+++++++|..++|||+|++||++|+|..++....+ +++|++|+..+..+++++.+.+++
T Consensus 159 ~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 238 (390)
T PF01433_consen 159 KDYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKAL 238 (390)
T ss_dssp TTTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHH
T ss_pred ccceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHH
Confidence 999999999999874 4567999999999999999999999999998876654 899999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCcceeecCCCCcccccccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhcCccccCccc
Q 002859 242 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 321 (873)
Q Consensus 242 ~~~e~~fg~~yp~~k~d~v~~p~~~~gamen~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 321 (873)
++|+++||+|||++|+|+|++|+|..|||||||+|+|+|..++++++.++...++.+..+||||+|||||||+||++||+
T Consensus 239 ~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~ 318 (390)
T PF01433_consen 239 EYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWS 318 (390)
T ss_dssp HHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGG
T ss_pred HHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccch
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHhhhCcchhHHHHHHHHHH-HHHhhcccCCCCCeeeecCCchhhhhhccceeechh
Q 002859 322 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKG 392 (873)
Q Consensus 322 d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg 392 (873)
|+||+||||+|++++++++.+|++++++.+..+.+ .++..|+...++|+..++.++.+++..|+.++|.||
T Consensus 319 d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 319 DLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 99999999999999999999999998888877776 779999999999999888999999999999999998
No 8
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-52 Score=445.70 Aligned_cols=429 Identities=25% Similarity=0.388 Sum_probs=337.5
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEeCCceeeEEEEeeccCCCCccccce-eEEEecCCeEEE
Q 002859 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPT-KVELVEADEILV 89 (873)
Q Consensus 11 p~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~-~~~~~~~~~~l~ 89 (873)
+..+.-.|++|++++|++...++|++.+++++......|+|+.++|.|.+|++++... ...+. .-.+...+..+.
T Consensus 13 ~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~----~~~i~~~~~~~g~~~~~~ 88 (613)
T KOG1047|consen 13 YRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEP----PFRIGFRQPFLGSGQKLV 88 (613)
T ss_pred hhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCC----CCccCcccCCCCCceEEE
Confidence 4556789999999999999999999999999887776799999999999999986321 11111 111222233455
Q ss_pred EEeCCccCCc-eEEEEEEEEeeeCCCCcceEEeee-ccCCeeeeeeccCCCcccccccccccCCCCCceEEEEEEEeCCC
Q 002859 90 LEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE 167 (873)
Q Consensus 90 i~l~~~L~~g-~~~l~i~y~g~l~~~~~G~y~~~y-~~~g~~~~~~~t~~ep~~Ar~~fPc~Dep~~ka~f~i~i~~p~~ 167 (873)
+..+.+ +.| +.+|.|.|+..- +..|+-.-.- ...|+++.|+.+|+|..+||.+|||+|.|+.|.||+..|.+|.+
T Consensus 89 l~~~~~-~a~~~~~l~i~y~Ts~--~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~ 165 (613)
T KOG1047|consen 89 LPAPSS-KAGERLQLLIWYETSP--SATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMG 165 (613)
T ss_pred eccccc-cccCceEEEEEEeccC--CcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCc
Confidence 554433 355 889999998643 3345532222 23477889999999999999999999999999999999999999
Q ss_pred CeEEecCCcccee-ecCCeEEEEEecCCCccceEEEEEEeeeeeeeeccccEEEEEeCCchhhHHHHHH-HHHHHHHHHH
Q 002859 168 LVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDVRVYCQVGKANQGKFALN-VAVKTLELYK 245 (873)
Q Consensus 168 ~~~~sn~~~~~~~-~~~~~~~~~f~~t~~ms~yl~a~~vg~f~~~~~~~~~i~v~~~~~~~~~~~~~l~-~~~~~l~~~e 245 (873)
+.+++++...++. -..+...++|....|+|+||+||++|+.+..+. ..+-+||+.|...+.+++-+. .+.++|..-|
T Consensus 166 l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~eI-gpRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae 244 (613)
T KOG1047|consen 166 LTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESREI-GPRSRVWAEPCLLDACQEEFAGETEDFLKAAE 244 (613)
T ss_pred ceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhcccccccc-CCccceecchhhhHHHHHHHHhhhHHHHHHHH
Confidence 9999888665543 334577889999999999999999999886553 233799999998887777776 8999999999
Q ss_pred HHhCCCCCCCCcceeec-CCCCcccccccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhcCccccCccchhh
Q 002859 246 EYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLW 324 (873)
Q Consensus 246 ~~fg~~yp~~k~d~v~~-p~~~~gamen~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~W 324 (873)
+.+| ||+..++|++++ |.|++|||||+-|.+...+ ||-... ....+|||||||-||||+||...|.+.|
T Consensus 245 ~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGDr--------sl~~vIaHEIAHSWtGNlVTN~sWehfW 314 (613)
T KOG1047|consen 245 KLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGDR--------SLVDVIAHEIAHSWTGNLVTNASWEHFW 314 (613)
T ss_pred HHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCCc--------chhhHHHHHhhhhhcccccccCccchhh
Confidence 9999 999999999998 5899999999977776666 555443 3578999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhhCcchhHHHHHHHHHH-HH--HhhcccCCCCCeeeecCCc--hhhhhhccceeechhhHHHHHH
Q 002859 325 LNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EG--LRLDGLAESHPIEVEVNHT--GEIDEIFDAISYRKGASVIRML 399 (873)
Q Consensus 325 L~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~D~~~~~~pi~~~~~~~--~~~~~~f~~i~Y~Kg~~vl~mL 399 (873)
|||||++|++..++..++|+-.. +|-.-.. .. -..|....+++...-+.+. .+.+..|..+.|.||..+|+.|
T Consensus 315 LNEGfTvylErrI~g~~~g~~~~--~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~~L 392 (613)
T KOG1047|consen 315 LNEGFTVYLERRIVGRLYGEAYR--QFEALIGWRELRPSMDLFGETSEFTKLVVKLENVDPDDAFSQVPYEKGFALLFYL 392 (613)
T ss_pred hcccchhhhhhhhhhhhcchhHH--HHHHhcChhhhhhHHHhcCCCcccchhhhhccCCChHHhhhcCchhhhhHHHHHH
Confidence 99999999999999999987322 2211111 11 1235555566654333221 3557889999999999999999
Q ss_pred HHhhC-HHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCC----CH--HHHHHHhhcCCCcceEEE
Q 002859 400 QNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE----PV--NKLMNSWTKQKGYPVISV 459 (873)
Q Consensus 400 ~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~----~l--~~~~~~W~~~~G~P~v~v 459 (873)
++.+| ++.|...||.|+++|+|+.+.++||.+.+-+.... ++ .--++.|++.+|.|-..-
T Consensus 393 e~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p 459 (613)
T KOG1047|consen 393 EQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKP 459 (613)
T ss_pred HHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCC
Confidence 99999 77899999999999999999999999999876432 22 224799999999997543
No 9
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=100.00 E-value=1.2e-51 Score=453.45 Aligned_cols=313 Identities=37% Similarity=0.639 Sum_probs=270.0
Q ss_pred eEEeCCCceeEEEEEcCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhc-cCCCcHHHHHHHH
Q 002859 529 WIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASY-SEETEYTVLSNLI 607 (873)
Q Consensus 529 wi~~N~~~~gyyRV~Yd~~~w~~l~~~l~~~~i~~~~Ra~li~D~~~la~~g~l~~~~~l~l~~~l-~~E~~~~~w~~~~ 607 (873)
||++|.+++|||||+||+++|+.|+++|..+.|++.+|++|++|+|+|+++|.++++.+|+++.|+ ++|++|.||..++
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~ 80 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTAL 80 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 999999999999999999999999999987779999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 002859 608 TISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA 687 (873)
Q Consensus 608 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~~~~~c~~~A~~~f~~~~~ 687 (873)
..|..+.+++...++.....|++|+++++.++++++||+..+++++...++|..++.+|| |+++|+++|.++|++|+.
T Consensus 81 ~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~ 158 (324)
T PF11838_consen 81 SNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhc
Confidence 999999977763324444459999999999999999999988899999999999999999 999999999999999998
Q ss_pred CCCC--CCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCc-CCc
Q 002859 688 DRTT--PLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRS 764 (873)
Q Consensus 688 ~~~~--~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~~~l~aL~cs~d~~ll~~~L~~~l~~~-i~~ 764 (873)
++.. ..||||+|.+|||+ ++++|+.++|++|+++|+++++++||..++.||||++||++++++|+++++++ ++.
T Consensus 159 ~~~~~~~~i~~dlr~~v~~~---~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~ 235 (324)
T PF11838_consen 159 GNDSPESSIPPDLRWAVYCA---GVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRS 235 (324)
T ss_dssp TTT-TTSTS-HHHHHHHHHH---HTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-T
T ss_pred CCcccccccchHHHHHHHHH---HHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCccccc
Confidence 7433 38999999987765 55689999999999999999999999999999999999999999999999985 999
Q ss_pred ccceeeee-ec-cc--cHHHHHHHHHHHHHHHHHHhCCC-cchHHHHHHhhccCCCHHHHHHHHHHhhc--CCCchHHHH
Q 002859 765 QDAVYGLA-VS-IE--GRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS--RCKPYIART 837 (873)
Q Consensus 765 qd~~~~~~-v~-~~--g~~~~~~fl~~n~~~i~~~~~~~-~~l~~~i~~~~~~~~t~~~l~~~~~Ff~~--~~~~~~~~~ 837 (873)
||+..++. ++ .+ |++++|+|+++||+.|.++++++ +.++.++..+++.++|+++++++++||++ ++.++..++
T Consensus 236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~r~ 315 (324)
T PF11838_consen 236 QDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLRRA 315 (324)
T ss_dssp TTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTTHH
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhCcCCChHHHHH
Confidence 99988888 76 55 99999999999999999999865 47899999999999999999999999954 445688899
Q ss_pred HHHHHHHHH
Q 002859 838 LRQSIERVQ 846 (873)
Q Consensus 838 ~~~~le~i~ 846 (873)
++|++|+||
T Consensus 316 l~q~~e~Ir 324 (324)
T PF11838_consen 316 LAQSLETIR 324 (324)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999986
No 10
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=2.4e-34 Score=327.73 Aligned_cols=426 Identities=19% Similarity=0.273 Sum_probs=314.4
Q ss_pred eeEEEEEEE-ecCCCCeEEEEEEEEEEEE-CCCCEEEEEeCCceeeEEEEeeccCC--------------CCc-cc----
Q 002859 16 PKRYDIRLT-PDLTSCKFGGSVAIDVDVV-GDTKFIVLNAADLTINNRSVSFTNKV--------------SSK-AL---- 74 (873)
Q Consensus 16 p~~Y~l~l~-~~~~~~~~~G~v~I~~~~~-~~~~~i~L~~~~l~i~~v~i~~~~~~--------------~~~-~~---- 74 (873)
-.|..+.|. +|+.+..+.|.++|++... .+...|+||++++.|.+|.|++.... ..+ ..
T Consensus 27 ~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s 106 (1180)
T KOG1932|consen 27 VLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPAS 106 (1180)
T ss_pred ceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhh
Confidence 579999998 9999999999999999974 45899999999999999999875210 000 00
Q ss_pred -----cceeEEEecCCeEEEEEeCCccCC-c----eEEEEEEEEeeeCCCCcceEEeeeccCCeeeeeeccCCC-ccccc
Q 002859 75 -----EPTKVELVEADEILVLEFAETLPT-G----MGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFE-PADAR 143 (873)
Q Consensus 75 -----~~~~~~~~~~~~~l~i~l~~~L~~-g----~~~l~i~y~g~l~~~~~G~y~~~y~~~g~~~~~~~t~~e-p~~Ar 143 (873)
...-...+..++.|.|.++++++. | ..+++|.|+..=+..+--|++..|..+.....+.++..+ +.+||
T Consensus 107 ~~~~~~~~y~~l~~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar 186 (1180)
T KOG1932|consen 107 QSHFLAVQYEDLDEDNGELLIKIPKESKKVGEELKALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSAR 186 (1180)
T ss_pred hhhhHHHhhhccccCCCeEEEEcCchhhhhhhhccceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccc
Confidence 011123345568899999988543 2 346779998765555556777766333222334444444 56799
Q ss_pred ccccccCCCCCceEEEEEEEeCCCCeEEecCCccce--eecCCeEEEEEecCCCccceEEEEEEeeeeeeeeccc-cEEE
Q 002859 144 RCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE--KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTS-DVRV 220 (873)
Q Consensus 144 ~~fPc~Dep~~ka~f~i~i~~p~~~~~~sn~~~~~~--~~~~~~~~~~f~~t~~ms~yl~a~~vg~f~~~~~~~~-~i~v 220 (873)
.||||.|.+..+++|++.+++|+.++++|+|.+... ..+-+.++++|.-+.||++..+||+||+|+....... .|..
T Consensus 187 ~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~~~i~~ 266 (1180)
T KOG1932|consen 187 SWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSMIDITH 266 (1180)
T ss_pred eEEeecCCccccceEEEEEEecccceeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccCCCccCccee
Confidence 999999999999999999999999999999998876 3334578999999999999999999999998743332 3999
Q ss_pred EEeCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeccccccccCCCChhHHHHHHHH
Q 002859 221 YCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVAT 300 (873)
Q Consensus 221 ~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamen~gli~~~e~~ll~~~~~~~~~~~~~~~~ 300 (873)
|+-|+.+...+...-...++++|||+++|..|||+.+.+|++|.-..--|....|.++..+ +||+.+. ++.......
T Consensus 267 f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~-lLy~~~i--IDq~~~tr~ 343 (1180)
T KOG1932|consen 267 FCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTS-LLYSKNI--IDQTFLTRR 343 (1180)
T ss_pred EecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeecc-ccchHhh--hhHHHHHHH
Confidence 9999999999999999999999999999988999999999999877777777778888877 8998763 334445677
Q ss_pred HHHHHHHHHHhcCccccCccchhhhhhhHHHHHHHHHHhhhCcchhHHHHHHHHHHHHHhhcccC----CCCCeeeecC-
Q 002859 301 VVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLA----ESHPIEVEVN- 375 (873)
Q Consensus 301 ~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~----~~~pi~~~~~- 375 (873)
.+|-.||.||||-.+|+..|+|.||-+|+|.|+..++++++.|..++..+...+.-....+|-.. .+.|+.....
T Consensus 344 ~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~Pi~~s~k~ 423 (1180)
T KOG1932|consen 344 KLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRPISPSMKF 423 (1180)
T ss_pred HHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccCCCcchhh
Confidence 89999999999999999999999999999999999999999998766433332222333444321 1223332221
Q ss_pred -------------CchhhhhhccceeechhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHH
Q 002859 376 -------------HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVN 442 (873)
Q Consensus 376 -------------~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~ 442 (873)
+....+..|..-.-.|+..+.+|+++.+|.+-|.+..+.-+. .++...++
T Consensus 424 ~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~-----------------~~~~~~~k 486 (1180)
T KOG1932|consen 424 KLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLE-----------------LASKMLLK 486 (1180)
T ss_pred cccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH-----------------hhhhhHHH
Confidence 000011111111124778888888888888776554444432 22222357
Q ss_pred HHHHHhhcCCCcceEEEEE
Q 002859 443 KLMNSWTKQKGYPVISVKV 461 (873)
Q Consensus 443 ~~~~~W~~~~G~P~v~v~~ 461 (873)
.|++.|++..|+|++.+..
T Consensus 487 ~~~~~Wv~~~g~~~~r~~~ 505 (1180)
T KOG1932|consen 487 SFFQTWVYGLGVPILRLGQ 505 (1180)
T ss_pred HHHHHHHhccCCeeEEEEE
Confidence 7888888888888887764
No 11
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.14 E-value=6.7e-11 Score=110.66 Aligned_cols=107 Identities=29% Similarity=0.487 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCccchhhhhhhHHHHHHHHHHhhhCcchhHHHHHHHHHHHHHhhcccCCCCCeeeec
Q 002859 295 KQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEV 374 (873)
Q Consensus 295 ~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~pi~~~~ 374 (873)
...+..+++||++|+|+++.+........|++||+|+|++... .+ .+.......+..+....-.++....
T Consensus 22 ~~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~----~~------~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (128)
T PF13485_consen 22 EDWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRI----ED------EFDEDLKQAIESGSLPPLEPLNSSF 91 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCc----cc------hhHHHHHHHHHcCCCCChHHHhccc
Confidence 3456689999999999999998777888999999999999331 11 1111222233333323222322211
Q ss_pred CCchhhhhhccceeechhhHHHHHHHHhhCHHHHHHHHHHH
Q 002859 375 NHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASY 415 (873)
Q Consensus 375 ~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~y 415 (873)
.. ...+....|.+|.+++++|....|++.|++.|++|
T Consensus 92 ~~----~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 92 DF----SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred cc----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11 33455678999999999999999999999999875
No 12
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.10 E-value=4e-09 Score=114.51 Aligned_cols=245 Identities=17% Similarity=0.214 Sum_probs=159.4
Q ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeec-CCCCcccccccccceeccccccccCCCChhHH-H
Q 002859 218 VRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAAN-K 295 (873)
Q Consensus 218 i~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~k~d~v~~-p~~~~gamen~gli~~~e~~ll~~~~~~~~~~-~ 295 (873)
+.++..-. ..+.+...+.++++++.=.+.|| +-|+.++.+++- .+-.+||||+-.-.. +.++...-+..+ .
T Consensus 172 ~~~~g~~p-~~d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~-----l~~~r~~~~~~~ky 244 (558)
T COG3975 172 IALRGELP-NFDKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTA-----LIYDRFGFTDQDKY 244 (558)
T ss_pred EEEeeccc-cccHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceeccccc-----cccccccccchhHH
Confidence 44444321 23556777888999999999999 789999887654 566678999854333 333332111123 3
Q ss_pred HHHHHHHHHHHHHHHhcCccccCc-c----------chhhhhhhHHHHHHHHHHhhhCcchhHHHHHHH---HHHHHHhh
Q 002859 296 QRVATVVAHELAHQWFGNLVTMEW-W----------THLWLNEGFATWVSYLAADSLFPEWKIWTQFLD---ECTEGLRL 361 (873)
Q Consensus 296 ~~~~~~iaHElaHqWfGnlVt~~~-w----------~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 361 (873)
+....+++||..|-|-+-.+-|.- | .-+|+.|||++|+...+.-.. +-.. .++|+. +...++..
T Consensus 245 ~~~l~llsHEyfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRs-gl~~-~~~~l~~la~tl~~~~~ 322 (558)
T COG3975 245 QDLLGLLSHEYFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRS-GLIS-LETYLNYLAKTLARYLN 322 (558)
T ss_pred HHHHHHHHHHHHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHh-ccCc-HHHHHHHHHHHHHHHhc
Confidence 667889999999999997776643 2 459999999999997755432 1111 123332 22222322
Q ss_pred cccCCCCCeeeecCCc-----hhhhhhc-ccee--echhhHHHHHHHHhh-----CHHHHHHHHHHHHHHhcc--CCCCh
Q 002859 362 DGLAESHPIEVEVNHT-----GEIDEIF-DAIS--YRKGASVIRMLQNYL-----GAECFQRSLASYIKKYAC--SNAKT 426 (873)
Q Consensus 362 D~~~~~~pi~~~~~~~-----~~~~~~f-~~i~--Y~Kg~~vl~mL~~~l-----G~~~F~~~l~~yl~~~~~--~~~~~ 426 (873)
-.....+|+.....++ .. +..+ +.+. |.||++|--+|...| |+..+...|+.+.+.+.. +..++
T Consensus 323 ~~gRl~~~laEsS~~awik~yr~-d~ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~ 401 (558)
T COG3975 323 TPGRLRQSLAESSFDAWIKYYRP-DENSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTP 401 (558)
T ss_pred CCceecccccccccchhHHhhcc-cccccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCH
Confidence 2222233443222111 00 1111 1223 899999999988888 466788888888888765 66799
Q ss_pred HHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeCcEEEEEEEe
Q 002859 427 EDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQ 472 (873)
Q Consensus 427 ~df~~~l~~~~~~~l~~~~~~W~~~~G~P~v~v~~~~~~~~l~Q~r 472 (873)
+++...+++++|.++..||+..+++.--|.+.---....+++++++
T Consensus 402 e~v~av~~~~tg~dl~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~ 447 (558)
T COG3975 402 EDVQAVLENVTGLDLATFFDEYIEGTEPPPLNPLLERFGLTFTPKP 447 (558)
T ss_pred HHHHHHHHhhccccHHHHHHHHhhcCCCCChhhhhhhcceEEEecC
Confidence 9999999999999999999999999877665433333456666654
No 13
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.31 E-value=0.01 Score=64.15 Aligned_cols=143 Identities=18% Similarity=0.195 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHhc--CccccC--ccchhhhhhhHHHHHHHHHHhhhCcchhHHHHHHHHHHHHHhhc-ccCCCCC
Q 002859 295 KQRVATVVAHELAHQWFG--NLVTME--WWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLD-GLAESHP 369 (873)
Q Consensus 295 ~~~~~~~iaHElaHqWfG--nlVt~~--~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~p 369 (873)
...+..++|||+-|+=-- +.|... .-.|+|||||+|.-+|.++.....+..+. ........+..+ .....+.
T Consensus 136 ~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~---i~d~R~~~y~~~~~~~~~~~ 212 (366)
T PF10460_consen 136 PDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNN---IRDSRIPYYNNYTSGNYNCS 212 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCc---cccccHHHHhhccccCCCcc
Confidence 456789999999997522 334443 23699999999999999887776433211 000111111111 1112222
Q ss_pred eeeecCCchhhhhhccceeechhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHh-c-cCCCHHHHHHH
Q 002859 370 IEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEE-G-SGEPVNKLMNS 447 (873)
Q Consensus 370 i~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~-~-~~~~l~~~~~~ 447 (873)
+... .... -...+|....++..-|....|.+.+++.|.. ....+.++..+++.+ + .+.++.++|.+
T Consensus 213 l~~w-~~~g-----~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~~ 280 (366)
T PF10460_consen 213 LTAW-SSFG-----DSLASYSSSYSFGAYLYRQYGGDFYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLRR 280 (366)
T ss_pred eeec-CCCc-----cccccchhHHHHHHHHHHHcChHHHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 2221 1111 1235799999999999888899887766652 133567777666554 3 35689999999
Q ss_pred hhcCC
Q 002859 448 WTKQK 452 (873)
Q Consensus 448 W~~~~ 452 (873)
|...-
T Consensus 281 w~~A~ 285 (366)
T PF10460_consen 281 WGVAL 285 (366)
T ss_pred HHHHH
Confidence 97665
No 14
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=96.91 E-value=0.0006 Score=61.76 Aligned_cols=43 Identities=23% Similarity=0.477 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhcCcccc-----------CccchhhhhhhHHHHHHHHHHhh
Q 002859 298 VATVVAHELAHQWFGNLVTM-----------EWWTHLWLNEGFATWVSYLAADS 340 (873)
Q Consensus 298 ~~~~iaHElaHqWfGnlVt~-----------~~w~d~WL~EGfa~y~~~~~~~~ 340 (873)
...++|||..|.|-+-.+.| .--+.+|+-|||++|++.++..+
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~R 57 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVR 57 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHH
Confidence 45689999999999755544 44567999999999999887654
No 15
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=96.36 E-value=0.55 Score=51.72 Aligned_cols=303 Identities=17% Similarity=0.150 Sum_probs=143.0
Q ss_pred EEEEEEEeeccCCCCCCCeeEEEEEEEEccc--cc-----eeeEEeeccceEEEecccccccccCCCCCCceEEeCCCce
Q 002859 465 KLELEQSQFLSSGSPGDGQWIVPITLCCGSY--DV-----CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 537 (873)
Q Consensus 465 ~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~~--~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 537 (873)
+++++|......+.....+|.|||.+..-+. .. ...+.++..++++.+.++. .. ...-++-+.+
T Consensus 6 ~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~-------~~--PvpSllRgFS 76 (367)
T PF11940_consen 6 TLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVS-------EK--PVPSLLRGFS 76 (367)
T ss_dssp EEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES----------S----EEEESTTG-
T ss_pred EEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCC-------CC--ceeehhcCcc
Confidence 5788998766666666669999999865332 22 1235678888899987642 22 4688899999
Q ss_pred eEEEEEcCH--HHHHHHHHHHHhcCCChhhHHH--------HHHHHHHHHHcC-CCCH-HHHHHHHHhcc--CCCcHHHH
Q 002859 538 GFYRVKYDK--DLAARLGYAIEMKQLSETDRFG--------ILDDHFALCMAR-QQTL-TSLLTLMASYS--EETEYTVL 603 (873)
Q Consensus 538 gyyRV~Yd~--~~w~~l~~~l~~~~i~~~~Ra~--------li~D~~~la~~g-~l~~-~~~l~l~~~l~--~E~~~~~w 603 (873)
.+.++.||- +.+..|... + -++-+|.. +|.+...-..+| .... ..+++.++.+- .+.|...-
T Consensus 77 APV~l~~~~s~~eL~~L~~~---D-~D~FnRWdA~Q~L~~~~l~~~~~~~~~~~~~~~~~~~i~a~~~~L~d~~~d~a~~ 152 (367)
T PF11940_consen 77 APVKLEYDYSDEELAFLAAH---D-SDPFNRWDAAQTLATRILLALIADKQAGKPLALSAALIEAFRALLADDDLDPAFK 152 (367)
T ss_dssp SSSEEE----HHHHHHHHHH-----SSHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHH-SSS-HHHH
T ss_pred cceEecCCCCHHHHHHHHHc---C-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHcCCCCCHHHH
Confidence 999998863 333333322 1 12333431 111111111222 0111 22444444322 22233332
Q ss_pred HHHHHH--HHHHHHHHhccChh--------HHHHHHHHHHHHHHHHHHHcCCcc---CCCCCHHHHHHHHHHHHHHHhcC
Q 002859 604 SNLITI--SYKIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLG 670 (873)
Q Consensus 604 ~~~~~~--l~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~il~~ac~~~ 670 (873)
..++.. ...|...+..-+|+ ....+..-+...+..+|+++.-.. ...+..-.+.||..++.+++..+
T Consensus 153 A~~L~LPs~~~l~~~~~~iDp~~i~~ar~~l~~~la~~l~~~l~~~y~~~~~~~~y~~~~~~~g~RaLkn~~L~yL~~~~ 232 (367)
T PF11940_consen 153 ALLLTLPSESELAEQMENIDPDAIHAAREALRRALAQALRDELLALYQALAATGPYSPDAEAAGRRALKNLCLSYLAAAD 232 (367)
T ss_dssp HHHTS---HHHHCTT-SSB-HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHTTTTT-SHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHccCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 222221 11222211110111 112222233334455556651111 12233456899999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHH
Q 002859 671 HKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIV 750 (873)
Q Consensus 671 ~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~~~l~aL~cs~d~~ll 750 (873)
.++..+.|.+.|+.-. + ---|-+.+.+++..-....++..+..+++|++....-+|.-.+.|.+...| .+
T Consensus 233 ~~~~~~la~~qy~~A~---n-----MTD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~LV~dKWFalQA~~~~~~--~l 302 (367)
T PF11940_consen 233 DPEAAELAQEQYKSAD---N-----MTDRLAALSALVNSDSPEREEALEDFYERWKDDPLVMDKWFALQASSPSPD--TL 302 (367)
T ss_dssp CTHHHHHHHHHHHHSS---S-----HHHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHHHHHHHHHHHHT--STT--HH
T ss_pred chHHHHHHHHHHHhCC---C-----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChHHHHHHHHHHhCCCCcc--HH
Confidence 9999999999998641 1 113333333333210011223355666666666666678888888766644 56
Q ss_pred HHHHHHhccCcCCcccceeeee-eccc-cHHHHHHHHHHHHHHHHHHhCCC
Q 002859 751 LEVLNFLLSSEVRSQDAVYGLA-VSIE-GRETAWKWLKDNWDHISKTWGSG 799 (873)
Q Consensus 751 ~~~L~~~l~~~i~~qd~~~~~~-v~~~-g~~~~~~fl~~n~~~i~~~~~~~ 799 (873)
.++-.+.-++. |. -..| .|-+.-.|...|-..+...-|+|
T Consensus 303 ~~V~~L~~Hp~---------F~~~NPNrvRaLig~Fa~~N~~~FH~~dG~G 344 (367)
T PF11940_consen 303 ERVKKLMQHPA---------FDLKNPNRVRALIGAFAQANPVQFHAADGSG 344 (367)
T ss_dssp HHHHHHTTSTT---------TTTT-HHHHHHHHHHHHHC-HHHHT-TTSHH
T ss_pred HHHHHHhcCCC---------CCCCCCcHHHHHHHHHHhcChhhhcCCCCcH
Confidence 66555544432 22 1234 66677777777777776665544
No 16
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=95.99 E-value=0.11 Score=52.13 Aligned_cols=172 Identities=19% Similarity=0.252 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHhCCC-CCCCCcceeec--CCCCcccc----cccccceeccccccccCCCChhHHHHHHHHHHHH
Q 002859 232 FALNVAVKTLELYKEYFAVP-YSLPKLDMIAI--PDFAAGAM----ENYGLVTYRETALLYDDQHSAAANKQRVATVVAH 304 (873)
Q Consensus 232 ~~l~~~~~~l~~~e~~fg~~-yp~~k~d~v~~--p~~~~gam----en~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaH 304 (873)
.+.....++..+..+.|-.+ .+-+..+.|.+ .++..-|- .+-.-|.++...+--.+. ....+..+..+|.|
T Consensus 25 ~a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~~gVA~t~gd~~~~~I~~S~~~i~~~~~--~~~~~~Ei~Gvl~H 102 (205)
T PF04450_consen 25 DAEQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDMDGVAYTSGDDDHKEIHFSARYIAKYPA--DGDVRDEIIGVLYH 102 (205)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECCCeeEEEecCCCccEEEEeHHHHhhccc--ccchHHHHHHHHHH
Confidence 34445556666666666433 22333444432 33321111 111345555543221111 12344678999999
Q ss_pred HHHHHHhcCccccCccchhhhhhhHHHHHHHHHHhhhCcchhHHHHHHHHHHHHHhhcccCCCCCeeeecCCchhhhhhc
Q 002859 305 ELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIF 384 (873)
Q Consensus 305 ElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~pi~~~~~~~~~~~~~f 384 (873)
|++|-|=.+--.. .--||-||+|.|+-..+- +.|. ....|.. ...+
T Consensus 103 E~~H~~Q~~~~~~---~P~~liEGIADyVRl~aG--~~~~--------------------~w~~p~~---------~~~w 148 (205)
T PF04450_consen 103 EMVHCWQWDGRGT---APGGLIEGIADYVRLKAG--YAPP--------------------HWKRPGG---------GDSW 148 (205)
T ss_pred HHHHHhhcCCCCC---CChhheecHHHHHHHHcC--CCCc--------------------cccCCCC---------CCCc
Confidence 9999665443221 124899999999976520 0010 0111110 0123
Q ss_pred cceeechhhHHHHHHHH-hhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHH
Q 002859 385 DAISYRKGASVIRMLQN-YLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS 447 (873)
Q Consensus 385 ~~i~Y~Kg~~vl~mL~~-~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~ 447 (873)
+ -.|.-.|.+|.-|+. ..|+ .|-+-|..=+++..| ..+++|.. .+|+++.++.+.
T Consensus 149 d-~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y---~~~~~~~~---l~G~~v~~LW~e 204 (205)
T PF04450_consen 149 D-DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKY---SSDDFWKE---LLGKPVDELWAE 204 (205)
T ss_pred c-cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCC---CcHhHHHH---HHCcCHHHHHhh
Confidence 3 378899999999998 6664 355555555555555 45666654 458888887654
No 17
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=95.98 E-value=0.0043 Score=56.87 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCccccCcc--chhhhhhhHHHHHHHHHH
Q 002859 299 ATVVAHELAHQWFGNLVTMEWW--THLWLNEGFATWVSYLAA 338 (873)
Q Consensus 299 ~~~iaHElaHqWfGnlVt~~~w--~d~WL~EGfa~y~~~~~~ 338 (873)
+.+|+||-+||=.-|.=-..-- .=.|+.||||+|+|-...
T Consensus 2 ~~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 2 IATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPGM 43 (128)
T ss_pred chHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCcc
Confidence 3589999999998875322211 128999999999996544
No 18
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=92.32 E-value=0.43 Score=47.86 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcceeecCCCCcc-----cccccccceeccccccc-cCCCChhHHHHHHHHHHHHHHHHH
Q 002859 236 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAG-----AMENYGLVTYRETALLY-DDQHSAAANKQRVATVVAHELAHQ 309 (873)
Q Consensus 236 ~~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~g-----amen~gli~~~e~~ll~-~~~~~~~~~~~~~~~~iaHElaHq 309 (873)
.+.+.+....+.+ |.+.+++..+|.-+.+ .+...|-..+....+++ -+.. .....+..+||||+-|.
T Consensus 4 ~i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~~---~~~~~l~~~iaHE~hH~ 76 (195)
T PF10026_consen 4 IIEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPND---YSLEELPALIAHEYHHN 76 (195)
T ss_pred HHHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCCc---ccHHHHHHHHHHHHHHH
Confidence 3445555555554 4557887755532222 22234444455544444 2322 23447899999999998
Q ss_pred HhcCccc----cCccchhhhhhhHHHHHHHHHHhhhC
Q 002859 310 WFGNLVT----MEWWTHLWLNEGFATWVSYLAADSLF 342 (873)
Q Consensus 310 WfGnlVt----~~~w~d~WL~EGfa~y~~~~~~~~~~ 342 (873)
+--..+. -..--|.-+.||+|.+++........
T Consensus 77 ~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 77 CRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred HHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 6433332 11223567899999999977665544
No 19
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.55 E-value=2.8 Score=49.86 Aligned_cols=198 Identities=19% Similarity=0.190 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhH
Q 002859 546 KDLAARLGYAIEMKQLSETDRFGILDDHFALCMAR-QQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPEL 624 (873)
Q Consensus 546 ~~~w~~l~~~l~~~~i~~~~Ra~li~D~~~la~~g-~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~ 624 (873)
......|.+.+..+.++..++++++.=+.++++.- .--.+.+++|++.=.-..+...+.+++-.+..+.+......+..
T Consensus 356 ~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~ 435 (574)
T smart00638 356 PPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC 435 (574)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34556677777778899999999988877776433 33345555565543344567888888888887766553322211
Q ss_pred ----HHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcchhh
Q 002859 625 ----LDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRK 700 (873)
Q Consensus 625 ----~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~~~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~ 700 (873)
...+..|+...+....++ + +..-+...|..++..|++..+.. +..++.+ ....|+.+|-
T Consensus 436 ~~~~~~~~~~~l~~~l~~~~~~-------~----~~~~~~~~LkaLGN~g~~~~i~~----l~~~l~~--~~~~~~~iR~ 498 (574)
T smart00638 436 PDFVLEELLKYLHELLQQAVSK-------G----DEEEIQLYLKALGNAGHPSSIKV----LEPYLEG--AEPLSTFIRL 498 (574)
T ss_pred ChhhHHHHHHHHHHHHHHHHhc-------C----CchheeeHHHhhhccCChhHHHH----HHHhcCC--CCCCCHHHHH
Confidence 133444444444333221 1 12235678888999999887754 3444443 3457888887
Q ss_pred hhheeeeeecccCCHHHHHHHHHHHHcCCCHHH-HHHH-HHHhCCCCCHHHHHHHHHHhccC
Q 002859 701 AAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KTRI-LSSLASCPDVNIVLEVLNFLLSS 760 (873)
Q Consensus 701 ~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~e-k~~~-l~aL~cs~d~~ll~~~L~~~l~~ 760 (873)
....++.+.+.......-+.++..|.+...+.| |... +..|-|-++...++++.+.+..+
T Consensus 499 ~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E 560 (574)
T smart00638 499 AAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKE 560 (574)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhc
Confidence 544344322223466678889999998766554 5554 44445659999999998887654
No 20
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=91.24 E-value=1.1 Score=48.18 Aligned_cols=115 Identities=23% Similarity=0.262 Sum_probs=69.8
Q ss_pred EEeCCchhhHHHHHHHHHHHHHHHHHHhCCCC------------CCCCcceeecCCCCcccccc----cccceeccc---
Q 002859 221 YCQVGKANQGKFALNVAVKTLELYKEYFAVPY------------SLPKLDMIAIPDFAAGAMEN----YGLVTYRET--- 281 (873)
Q Consensus 221 ~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~y------------p~~k~d~v~~p~~~~gamen----~gli~~~e~--- 281 (873)
...|......+.=|..+.++=.|-.+.+|.|= |+--..+++.|.++.-.-.. .||+.|+--
T Consensus 39 l~dp~~~~~lr~rL~~~~~iR~FA~~~L~Lpdn~sY~~YadL~Rp~vvWnV~Aap~~sl~~~~WcFPi~Gcv~YrGyF~~ 118 (337)
T PF10023_consen 39 LADPATPPALRARLRLAQQIRRFASEELGLPDNGSYRSYADLDRPYVVWNVFAAPEFSLEPKTWCFPIVGCVPYRGYFDE 118 (337)
T ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhcCCCcEEEEEEecCcccCCcceeeccccccccccCcCCH
Confidence 34555555666667788888888888887542 23334566777664322221 355555430
Q ss_pred ----------------------------cccccCCCChh--HHHHHHHHHHHHHHHHHHhcCccccCccchhhhhhhHHH
Q 002859 282 ----------------------------ALLYDDQHSAA--ANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFAT 331 (873)
Q Consensus 282 ----------------------------~ll~~~~~~~~--~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~ 331 (873)
..+-||-.++. .....++.+|-||+|||=+. .+ +|.=+||+||+
T Consensus 119 ~~A~~~a~~L~~~GlDv~v~gV~AYSTLGwF~DPlLSt~l~~~~~~LA~LIfHELaHq~~Y----v~--~dt~FNEsfAt 192 (337)
T PF10023_consen 119 ADARAEAAELRAQGLDVYVGGVPAYSTLGWFDDPLLSTMLRYPDGELARLIFHELAHQTLY----VK--GDTAFNESFAT 192 (337)
T ss_pred HHHHHHHHHHHHcCCceeEecccccccccccCCcccccccCCCchHHHHHHHHHHhhceee----cC--CCchhhHHHHH
Confidence 01112222211 12347899999999999432 22 46678999999
Q ss_pred HHHHHHHhhh
Q 002859 332 WVSYLAADSL 341 (873)
Q Consensus 332 y~~~~~~~~~ 341 (873)
+.+..++.+.
T Consensus 193 fVe~~G~~~w 202 (337)
T PF10023_consen 193 FVEREGARRW 202 (337)
T ss_pred HHHHHHHHHH
Confidence 9998877664
No 21
>PRK04860 hypothetical protein; Provisional
Probab=85.27 E-value=1.5 Score=42.08 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCccccc--ccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 002859 233 ALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME--NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 310 (873)
Q Consensus 233 ~l~~~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~game--n~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 310 (873)
+...+...+..-+++||.|+|.|++.+-.- ...||+- .-+-|.++.. ++.+ .....+..+|+||+||.|
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~R--~rtaG~~~l~~~~I~~Np~--ll~~-----~~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYTQR--GTSAGTAWLQSNEIRLNPV--LLLE-----NQQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEeec--chhhcchhHhcCCeeeCHH--HHhh-----CcHHHHHhHHHHHHHHHH
Confidence 455667778888999999988876544321 1123332 2223444332 2221 234567889999999987
Q ss_pred h
Q 002859 311 F 311 (873)
Q Consensus 311 f 311 (873)
-
T Consensus 76 ~ 76 (160)
T PRK04860 76 V 76 (160)
T ss_pred H
Confidence 3
No 22
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=83.27 E-value=1.2 Score=44.95 Aligned_cols=40 Identities=33% Similarity=0.276 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhcCccccCccchhhhhhhHHHHHHHHHHhhh
Q 002859 296 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 341 (873)
Q Consensus 296 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~ 341 (873)
..++.+|-||+|||=|.-- +|.=+||+||+..|...+++.
T Consensus 195 ~~lA~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 195 TYLASLIFHELAHQKIYVN------NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred HHHHHHHHHHHhhheEeec------CcchHhHHHHHHHHHHhHHHH
Confidence 4789999999999976421 466789999999998877664
No 23
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=82.12 E-value=8.6 Score=38.75 Aligned_cols=94 Identities=21% Similarity=0.354 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 002859 231 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 310 (873)
Q Consensus 231 ~~~l~~~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamen~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 310 (873)
+.+.......++.|++.+|.++ +++.+=-.-. ..|....-|.|+|+-..+.+++ .-+..+|+||+||--
T Consensus 108 ~~~~~~l~~~~~~~~~~~~~~~--~~i~ir~~ks-rWGsc~~~~~I~ln~~L~~~P~--------~~idYVvvHEL~Hl~ 176 (205)
T PF01863_consen 108 KQAKEYLPERLKKYAKKLGLPP--PKIKIRDMKS-RWGSCSSKGNITLNWRLVMAPP--------EVIDYVVVHELCHLR 176 (205)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc--ceEEEeehhh-ccccCCCCCcEEeecccccCCc--------cHHHHHHHHHHHHhc
Confidence 4456667777888899888644 3433322222 2565556778888776433333 257889999999987
Q ss_pred hcCccccCccchhhhhhhHHHHHHHHHHhhhCcchhHHHHH
Q 002859 311 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQF 351 (873)
Q Consensus 311 fGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~ 351 (873)
.-| --...| ..++.+.|+|+.....
T Consensus 177 ~~n-----Hs~~Fw-----------~~v~~~~Pd~k~~~~~ 201 (205)
T PF01863_consen 177 HPN-----HSKRFW-----------ALVEKYMPDYKERRKW 201 (205)
T ss_pred cCC-----CCHHHH-----------HHHHHHCcCHHHHHHH
Confidence 654 333344 3455677887654443
No 24
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=80.24 E-value=1.6 Score=41.51 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=33.8
Q ss_pred HHHHHHH-HHhCCCCCCCCcceeecCCCCcccccc-cccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhc
Q 002859 239 KTLELYK-EYFAVPYSLPKLDMIAIPDFAAGAMEN-YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 312 (873)
Q Consensus 239 ~~l~~~e-~~fg~~yp~~k~d~v~~p~~~~gamen-~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 312 (873)
+.+.-++ .+|+-++|-+++..-.--.-..|.-.. .+.|.++.. .........+..+|.|||+|.+..
T Consensus 5 ~~~~~~n~~~F~~~l~~~~i~w~~r~~~~~G~~~~~~~~I~ln~~-------l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHPKVVWNKRLRKTGGRCLLKSAEIRLNPK-------LLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEehhhhhhhHHhhcCCCEEEeCHH-------HHhhccHHHHHhhHHHHHHHHHHH
Confidence 3344444 889877776532221110111222221 233444433 111112346778999999999974
No 25
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=80.21 E-value=17 Score=43.72 Aligned_cols=196 Identities=14% Similarity=0.118 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccC----
Q 002859 547 DLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQ-TLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADAR---- 621 (873)
Q Consensus 547 ~~w~~l~~~l~~~~i~~~~Ra~li~D~~~la~~g~l-~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~---- 621 (873)
.....|.+.+..+.++..+.++++.-+....+.-.. -...+++|++.-....+..++.+++-.+..+.+......
T Consensus 395 ~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 345566666777788888888776655444422111 123333344332234566788888888877765543320
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCC
Q 002859 622 ------PELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLP 695 (873)
Q Consensus 622 ------~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~~~~~c~~~A~~~f~~~~~~~~~~~i~ 695 (873)
....+.+..++.+.+..... ..+..-+...|..++..|++..+.. +..+..+ ....|
T Consensus 475 ~~~~~~~~~~~~~~~~l~~~l~~~~~-----------~~~~~~~~~~LkaLgN~g~~~~i~~----l~~~i~~--~~~~~ 537 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQELKEAVS-----------RGDEEEKIVYLKALGNLGHPESIPV----LLPYIEG--KEEVP 537 (618)
T ss_dssp ------SS--GGGTHHHHHHHHHHHH-----------TT-HHHHHHHHHHHHHHT-GGGHHH----HHTTSTT--SS-S-
T ss_pred cccccchhhHHHHHHHHHHHHHHHhh-----------ccCHHHHHHHHHHhhccCCchhhHH----HHhHhhh--ccccc
Confidence 11112222222222221111 1123556678888899999876644 4455554 22688
Q ss_pred cchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHH-HHHHHHH-hCCCCCHHHHHHHHHHhcc
Q 002859 696 PDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KTRILSS-LASCPDVNIVLEVLNFLLS 759 (873)
Q Consensus 696 ~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~e-k~~~l~a-L~cs~d~~ll~~~L~~~l~ 759 (873)
..+|-+..-++.+.+..-.....+.++..|.+...+.| |...+.. |-|-+++..++++.+.+-.
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLWN 603 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHhh
Confidence 89997554444322334455678999999999877655 4444333 4566999999998877644
No 26
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=77.18 E-value=88 Score=38.38 Aligned_cols=129 Identities=15% Similarity=0.192 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCcc-ccCccchhhhhhhHHHHHHHHHHhhhCc---chhH---HHHHHHHHHHHHhhcccCCCCCeee
Q 002859 300 TVVAHELAHQWFGNLV-TMEWWTHLWLNEGFATWVSYLAADSLFP---EWKI---WTQFLDECTEGLRLDGLAESHPIEV 372 (873)
Q Consensus 300 ~~iaHElaHqWfGnlV-t~~~w~d~WL~EGfa~y~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~D~~~~~~pi~~ 372 (873)
-.+-|||+|-+=+..+ .-..+.+.| |-=||.++++..+..... .|-. ....+...+...- + ...|
T Consensus 238 W~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~i-~---~~~~--- 309 (775)
T PF03272_consen 238 WGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIALI-D---NNKP--- 309 (775)
T ss_pred chhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHHH-h---cCCC---
Confidence 4689999999988887 445677899 778899998876542111 1111 0011111111110 1 0111
Q ss_pred ecCCchhhhhhcccee-echhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCC--ChHHHHHHHHhc-cCCCHHHHHHHh
Q 002859 373 EVNHTGEIDEIFDAIS-YRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNA--KTEDLWAALEEG-SGEPVNKLMNSW 448 (873)
Q Consensus 373 ~~~~~~~~~~~f~~i~-Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~--~~~df~~~l~~~-~~~~l~~~~~~W 448 (873)
|+... -.|=..+..||...-|++.|+..=+.|=+. .-.+. ..-.+++-+... ++.|+..+++-|
T Consensus 310 -----------~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~-~~~~~~~~~~~i~d~l~~~~~~~D~~p~~~l~ 377 (775)
T PF03272_consen 310 -----------FDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQL-NTNGFNPNDHQIFDWLASLYSGYDFTPYFQLV 377 (775)
T ss_pred -----------cccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-ccCCCCcccccHHHHHHHhhcCCchHhHHHHh
Confidence 22211 235445555788889999988776666554 21221 222333444444 899999999988
No 27
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=73.42 E-value=5 Score=43.50 Aligned_cols=32 Identities=38% Similarity=0.620 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhcCccccCccchhhhhhhHHHHHHHHHHhh
Q 002859 297 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 340 (873)
Q Consensus 297 ~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~ 340 (873)
..-.++|||+|||= | ...|+=|+|+++++..+
T Consensus 195 ~~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~ 226 (318)
T PF12725_consen 195 SLPFTICHELAHQL-G-----------FASEDEANFIAYLACIN 226 (318)
T ss_pred cccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhc
Confidence 45679999999995 3 34899999999987654
No 28
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=67.15 E-value=8.6 Score=38.18 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcCccccCccchhhhhhhHHHHHHHHHHhh
Q 002859 298 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 340 (873)
Q Consensus 298 ~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfa~y~~~~~~~~ 340 (873)
...++|||+.|-|.- ..-----+.++-||++..+++.+++.
T Consensus 93 ~gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~ 133 (212)
T PF12315_consen 93 TGSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLES 133 (212)
T ss_pred HhhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhh
Confidence 356899999999972 22222236789999999999997764
No 29
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=65.12 E-value=11 Score=31.87 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHH
Q 002859 656 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 735 (873)
Q Consensus 656 ~~lr~~il~~ac~~~~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~ 735 (873)
...|..++..++..++++.+....+++ .+ -++.+|..+..++.. .|+.+.+..|.+.+.++.+..-|.
T Consensus 14 ~~vr~~a~~~L~~~~~~~~~~~L~~~l----~d-----~~~~vr~~a~~aL~~---i~~~~~~~~L~~~l~~~~~~~vr~ 81 (88)
T PF13646_consen 14 PQVRAEAARALGELGDPEAIPALIELL----KD-----EDPMVRRAAARALGR---IGDPEAIPALIKLLQDDDDEVVRE 81 (88)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHH----TS-----SSHHHHHHHHHHHHC---CHHHHTHHHHHHHHTC-SSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHH----cC-----CCHHHHHHHHHHHHH---hCCHHHHHHHHHHHcCCCcHHHHH
Confidence 467788888999888876665544443 33 246788866554433 467778889999888877766688
Q ss_pred HHHHHhC
Q 002859 736 RILSSLA 742 (873)
Q Consensus 736 ~~l~aL~ 742 (873)
..+.|||
T Consensus 82 ~a~~aL~ 88 (88)
T PF13646_consen 82 AAAEALG 88 (88)
T ss_dssp HHHHHHH
T ss_pred HHHhhcC
Confidence 8888875
No 30
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=62.69 E-value=5.8 Score=40.60 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccc--cceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhcCcc
Q 002859 238 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYG--LVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLV 315 (873)
Q Consensus 238 ~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamen~g--li~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlV 315 (873)
.+.++-+.+..|.+.|.+++-++-.|..++.++..-. .|..... ++.. .+...+..++|||++|-.-++..
T Consensus 34 ~~~v~~l~~~~~~~~~~~~v~v~~~~~~NA~~~g~~~~~~I~v~~~-ll~~------~~~~el~aVlaHElgH~~~~h~~ 106 (226)
T PF01435_consen 34 RRIVEELARRAGLGIPPPRVYVIDSPSPNAFATGGGPRKRIVVTSG-LLES------LSEDELAAVLAHELGHIKHRHIL 106 (226)
T ss_dssp HHHHHHHHHHHHCTSS--EEEEE--SSEEEEEETTTC--EEEEEHH-HHHH------SSHHHHHHHHHHHHHHHHTTHCC
T ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCCCCcEEEEccCCCcEEEEeCh-hhhc------ccHHHHHHHHHHHHHHHHcCCcc
Confidence 3344444444465666655555554543222222111 1444443 3321 23457899999999999977654
Q ss_pred cc
Q 002859 316 TM 317 (873)
Q Consensus 316 t~ 317 (873)
..
T Consensus 107 ~~ 108 (226)
T PF01435_consen 107 KS 108 (226)
T ss_dssp CC
T ss_pred hH
Confidence 44
No 31
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=62.52 E-value=33 Score=29.92 Aligned_cols=62 Identities=11% Similarity=0.179 Sum_probs=33.4
Q ss_pred CCCCEEEEEeCC-ce--eeEEEEeeccCCCCccccceeEEEecCCeEEEEEeCCccCCceEEEEEEEE
Q 002859 44 GDTKFIVLNAAD-LT--INNRSVSFTNKVSSKALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFE 108 (873)
Q Consensus 44 ~~~~~i~L~~~~-l~--i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~L~~g~~~l~i~y~ 108 (873)
.+...|.|...+ ++ ...+.+.+.++ ..+.......+.....+.+.++.+|.+|.|+|.-.-.
T Consensus 17 ~~P~~v~L~F~e~v~~~~s~v~v~~~~g---~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvv 81 (97)
T PF04234_consen 17 AAPEEVTLTFSEPVEPGFSSVTVTDPDG---KRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVV 81 (97)
T ss_dssp S--SSEEEEESS---CCC-EEEEEEEEE---TTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEE
T ss_pred cCCCEEEEEeCCCCccCccEEEEEcCCC---ceeecCcceecCCceEEEEECCCCCCCceEEEEEEEE
Confidence 345667776652 44 67777765332 2333333344445678999999999999998765443
No 32
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=57.44 E-value=16 Score=34.84 Aligned_cols=74 Identities=24% Similarity=0.282 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCCCC--cceeecCCCC---cccccccccceeccccc-cccCCCChhHHHHHHHHH
Q 002859 228 NQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFA---AGAMENYGLVTYRETAL-LYDDQHSAAANKQRVATV 301 (873)
Q Consensus 228 ~~~~~~l~~~~~~l~~~e~~fg~~yp~~k--~d~v~~p~~~---~gamen~gli~~~e~~l-l~~~~~~~~~~~~~~~~~ 301 (873)
..+..|...+.++.+||.+.|| .-++.- ..+++.-.+. ..|.-+-..++|.+-.- .+.|- ..-..+
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~~~~NAfW~g~~m~yGdG~~~~f~~~-------~~~lDV 138 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGKNYNNAFWNGSQMVYGDGDGQIFKPF-------ASSLDV 138 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESSSTT-EEE-SSSEEEE---SSSBS-G-------GG-HHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCCCccCccccCCEEEEECCCCcccccC-------ccccce
Confidence 3456677788999999999999 555542 3333332221 12322222333332211 12221 112468
Q ss_pred HHHHHHHH
Q 002859 302 VAHELAHQ 309 (873)
Q Consensus 302 iaHElaHq 309 (873)
+||||+|-
T Consensus 139 vaHEltHG 146 (150)
T PF01447_consen 139 VAHELTHG 146 (150)
T ss_dssp HHHHHHHH
T ss_pred eeeccccc
Confidence 99999995
No 33
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=55.64 E-value=12 Score=41.87 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=34.0
Q ss_pred CCCCCcceeecCCCCcccccccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 002859 252 YSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 310 (873)
Q Consensus 252 yp~~k~d~v~~p~~~~gamen~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 310 (873)
-|-..++++.|-|-...|.-.+|.-++--+.++...+ +...++.|||||++|-=
T Consensus 89 ~~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae-----~esElagViAHEigHv~ 142 (484)
T COG4783 89 LVKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE-----NESELAGVIAHEIGHVA 142 (484)
T ss_pred CCCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC-----CHHHHHHHHHHHHHHHh
Confidence 3445578888876655565555544443333443332 34579999999999963
No 34
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=54.50 E-value=37 Score=32.24 Aligned_cols=49 Identities=22% Similarity=0.408 Sum_probs=35.0
Q ss_pred ccccceeEEEecCCeEEEEEeCCccCCceEEEEEEEEeeeCCCCcceEEe
Q 002859 72 KALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGFYRS 121 (873)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~i~l~~~L~~g~~~l~i~y~g~l~~~~~G~y~~ 121 (873)
+.+....+..+.++..+.|.|.+|++|| -+++|.+.+.-+....|.|.-
T Consensus 75 ~~ipl~~v~~~~~~~~i~I~f~~PV~pG-~tv~V~l~~v~NP~~~G~Y~f 123 (146)
T PF10989_consen 75 ESIPLAEVEWDEDGRTITITFDEPVPPG-TTVTVVLSPVRNPRSGGTYQF 123 (146)
T ss_pred CccCceEEEEcCCCCEEEEEeCCCCCCC-CEEEEEEEeeeCCCCCCeEEE
Confidence 3445567888899999999999999999 344445544445555677753
No 35
>PRK04351 hypothetical protein; Provisional
Probab=53.50 E-value=11 Score=35.87 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHH
Q 002859 295 KQRVATVVAHELAHQ 309 (873)
Q Consensus 295 ~~~~~~~iaHElaHq 309 (873)
...+..+|+||++|-
T Consensus 58 ~~~l~~vv~HElcH~ 72 (149)
T PRK04351 58 LEELIGIIKHELCHY 72 (149)
T ss_pred HHHHHhhHHHHHHHH
Confidence 567889999999995
No 36
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=51.20 E-value=90 Score=31.96 Aligned_cols=93 Identities=20% Similarity=0.329 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 002859 231 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 310 (873)
Q Consensus 231 ~~~l~~~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamen~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 310 (873)
+.+.+.....++.|.+.+|.+++--++. ..-. -.|+-...|-|.+.-. +..- ....+..+++||+||-=
T Consensus 119 ~~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~k~-~WGScs~~~~i~~~~~-l~~~-------p~~~i~YVvvHELaHLk 187 (223)
T COG1451 119 EILREILEIRLKEYAKKLGVPPRAIKLK--NMKR-RWGSCSKAGEIRFNWR-LVMA-------PEEVIDYVVVHELAHLK 187 (223)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceeee--eccc-eeeeecCCCcEEeehh-hhcC-------CHHHHHHHHHHHHHHHh
Confidence 4566777788888999999776533322 1111 1333333444444433 2211 23457889999999998
Q ss_pred hcCccccCccchhhhhhhHHHHHHHHHHhhhCcchhHHHH
Q 002859 311 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 350 (873)
Q Consensus 311 fGnlVt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~ 350 (873)
..|- + ...| ..++.++|++.....
T Consensus 188 e~nH-s----~~Fw-----------~lv~~~~P~~~~~~~ 211 (223)
T COG1451 188 EKNH-S----KRFW-----------RLVEKYMPDYRAAKR 211 (223)
T ss_pred hhhc-c----HHHH-----------HHHHHHCCChHHHHH
Confidence 8772 2 2333 345667888766544
No 37
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=49.15 E-value=16 Score=32.81 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhcCcc
Q 002859 297 RVATVVAHELAHQWFGNLV 315 (873)
Q Consensus 297 ~~~~~iaHElaHqWfGnlV 315 (873)
+...+++|||+|.+++..-
T Consensus 41 ~~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 41 RQRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhhhcc
Confidence 4467999999999998654
No 38
>PRK09687 putative lyase; Provisional
Probab=47.85 E-value=3.7e+02 Score=28.57 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHH
Q 002859 657 LLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTR 736 (873)
Q Consensus 657 ~lr~~il~~ac~~~~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~~ 736 (873)
..|..++..++..+++..+...... +++ -++++|...-.++.. +..++...-+.|..... ..+..-|..
T Consensus 143 ~VR~~a~~aLg~~~~~~ai~~L~~~----L~d-----~~~~VR~~A~~aLg~-~~~~~~~~~~~L~~~L~-D~~~~VR~~ 211 (280)
T PRK09687 143 NVRFAVAFALSVINDEAAIPLLINL----LKD-----PNGDVRNWAAFALNS-NKYDNPDIREAFVAMLQ-DKNEEIRIE 211 (280)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHH----hcC-----CCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhc-CCChHHHHH
Confidence 5666777777777776655443333 333 234677633222211 12345555666666653 445567778
Q ss_pred HHHHhCCCCCHHHHHHHHHHhc
Q 002859 737 ILSSLASCPDVNIVLEVLNFLL 758 (873)
Q Consensus 737 ~l~aL~cs~d~~ll~~~L~~~l 758 (873)
.+.|||...++..+..+++.+-
T Consensus 212 A~~aLg~~~~~~av~~Li~~L~ 233 (280)
T PRK09687 212 AIIGLALRKDKRVLSVLIKELK 233 (280)
T ss_pred HHHHHHccCChhHHHHHHHHHc
Confidence 8888888888777777776643
No 39
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=47.11 E-value=30 Score=37.15 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=41.2
Q ss_pred HHHHhCCCCCCCCcceeecCCCCccccccc---ccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhcCccc
Q 002859 244 YKEYFAVPYSLPKLDMIAIPDFAAGAMENY---GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 316 (873)
Q Consensus 244 ~e~~fg~~yp~~k~d~v~~p~~~~gamen~---gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 316 (873)
....-|+++ .+++.++-.|..++-++.+. |.|...+. ++ + ..+...+..+++||++|.=-++.++
T Consensus 108 ~a~~~~~~~-~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~g-Ll-~-----~l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 108 LARQAGIPH-MPEVYILETPQPNAFALGGGPKNGRVVVTTG-LL-D-----LLNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHHCCCCC-CCeeEEecCCCccceecCCCCCCeeEEecHH-HH-h-----hCCHHHHHHHHHHHHHHHhcccHHH
Confidence 344445332 46777776666555566653 67776665 33 2 1234578999999999988776554
No 40
>PRK03001 M48 family peptidase; Provisional
Probab=45.33 E-value=33 Score=36.67 Aligned_cols=68 Identities=22% Similarity=0.222 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCcccc---cccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 002859 237 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAM---ENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 313 (873)
Q Consensus 237 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gam---en~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 313 (873)
..+.++-+.+..|+|. |++-++--+..++-+. .+.+.|...+. ++ +. .+.+.+..++|||++|-=-++
T Consensus 69 L~~~v~~la~~~g~~~--p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~-----l~~~El~aVlAHElgHi~~~h 139 (283)
T PRK03001 69 FYRMVRELAQRAGLPM--PKVYLINEDQPNAFATGRNPEHAAVAATTG-IL-RV-----LSEREIRGVMAHELAHVKHRD 139 (283)
T ss_pred HHHHHHHHHHHcCCCC--CeEEEecCCCcceEEecCCCCCeEEEecHH-HH-hh-----CCHHHHHHHHHHHHHHHhCCC
Confidence 4466666677778654 5554443222221111 11233444433 22 11 134578999999999975443
No 41
>PRK03982 heat shock protein HtpX; Provisional
Probab=44.80 E-value=39 Score=36.20 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCccccc---ccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 002859 237 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 313 (873)
Q Consensus 237 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~game---n~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 313 (873)
..+.++-+.+..|+| .+++-++--+..++-+.. .-|.|...+. ++ + ..+...+..++|||++|-=-++
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~-----~l~~~El~AVlAHElgHi~~~h 140 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIVPTQTPNAFATGRDPKHAVVAVTEG-IL-N-----LLNEDELEGVIAHELTHIKNRD 140 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEEeCCCcceEEeccCCCCeEEEeehH-HH-h-----hCCHHHHHHHHHHHHHHHHcCC
Confidence 445556666667754 456555432222221221 1234434433 22 1 1134579999999999976554
No 42
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=43.98 E-value=64 Score=29.49 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=37.0
Q ss_pred CCEEEEEeCC---ceeeEEEEeeccCCCCccccceeEEEecCC-eEEEEEeCCccCCceEEEEEEEEe
Q 002859 46 TKFIVLNAAD---LTINNRSVSFTNKVSSKALEPTKVELVEAD-EILVLEFAETLPTGMGVLAIGFEG 109 (873)
Q Consensus 46 ~~~i~L~~~~---l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~L~~g~~~l~i~y~g 109 (873)
...|.|+..+ ..+..+.+.+.++ ..+.......+..+ ..+.|.++.+|++|.|++.-...+
T Consensus 46 P~~i~L~Fse~ve~~fs~~~l~~~d~---~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS 110 (127)
T COG2372 46 PAAITLEFSEGVEPGFSGAKLTGPDG---EEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVS 110 (127)
T ss_pred ceeEEEecCCccCCCcceeEEECCCC---CccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEe
Confidence 3456676653 3445666665332 12222333333433 459999999999999998877654
No 43
>PRK03072 heat shock protein HtpX; Provisional
Probab=43.32 E-value=46 Score=35.63 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcceeecCCCCccccc-cc--ccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhc
Q 002859 236 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME-NY--GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 312 (873)
Q Consensus 236 ~~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~game-n~--gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 312 (873)
...+.++-+.+..|+ |.|++-++-.+..++-+.. ++ +.+...+. ++ + ..+.+.+..++|||++|-==|
T Consensus 71 ~L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll-~-----~l~~~El~aVlAHElgHi~~~ 141 (288)
T PRK03072 71 AMYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-IL-Q-----ILNERELRGVLGHELSHVYNR 141 (288)
T ss_pred HHHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HH-H-----hCCHHHHHHHHHHHHHHHhcC
Confidence 345666677777785 4667655544432222221 11 12333322 33 1 113457899999999996544
Q ss_pred C
Q 002859 313 N 313 (873)
Q Consensus 313 n 313 (873)
+
T Consensus 142 d 142 (288)
T PRK03072 142 D 142 (288)
T ss_pred C
Confidence 3
No 44
>PRK02870 heat shock protein HtpX; Provisional
Probab=43.21 E-value=46 Score=36.39 Aligned_cols=64 Identities=25% Similarity=0.368 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCccccc---ccccceeccccccccCCCChhHHHHHHHHHHHHHHHHH
Q 002859 238 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 309 (873)
Q Consensus 238 ~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~game---n~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 309 (873)
.++++-+....|+|+ .|++-++-.+..++-++. .-+.|...+. ++ +. .+...+..++|||++|-
T Consensus 118 ~~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~G-LL-~~-----L~~dEL~aVlAHELgHi 184 (336)
T PRK02870 118 YNVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTG-LL-EK-----LDRDELQAVMAHELSHI 184 (336)
T ss_pred HHHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehH-Hh-hh-----CCHHHHHHHHHHHHHHH
Confidence 344555555567543 355555433333333332 2244554444 32 11 13457899999999996
No 45
>PRK04897 heat shock protein HtpX; Provisional
Probab=42.51 E-value=31 Score=37.15 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCccccc---ccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 002859 237 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 313 (873)
Q Consensus 237 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~game---n~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 313 (873)
..+.++-+.+..|+ |.|++-++--+..++-+.. +-+.|.+... ++- .-+.+.+..++|||++|-=-|+
T Consensus 82 L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~g-Ll~------~l~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 82 LWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTG-LLA------IMNREELEGVIGHEISHIRNYD 152 (298)
T ss_pred HHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehH-HHh------hCCHHHHHHHHHHHHHHHhcCC
Confidence 45666666777775 5667666544332222221 2234444432 221 1134578999999999965443
No 46
>PRK05457 heat shock protein HtpX; Provisional
Probab=41.99 E-value=36 Score=36.37 Aligned_cols=68 Identities=26% Similarity=0.369 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCccccc---ccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 002859 237 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 313 (873)
Q Consensus 237 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~game---n~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 313 (873)
..+.++-+.+..|+ |.|++-++-.+..++-+.. +-+.|.+... ++- .-+.+.+..++|||++|.=-|+
T Consensus 79 L~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~------~L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 79 LVETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LLQ------NMSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hhh------hCCHHHHHHHHHHHHHHHHcCC
Confidence 34556666777775 5677766654433222222 2234444432 221 1134578999999999986654
No 47
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=41.52 E-value=17 Score=34.88 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 002859 294 NKQRVATVVAHELAHQWFG 312 (873)
Q Consensus 294 ~~~~~~~~iaHElaHqWfG 312 (873)
....+..+|.|||+|.|..
T Consensus 56 ~~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 56 PEEELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3457889999999999973
No 48
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=41.31 E-value=87 Score=31.07 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCc
Q 002859 291 AAANKQRVATVVAHELAHQWFGNL 314 (873)
Q Consensus 291 ~~~~~~~~~~~iaHElaHqWfGnl 314 (873)
.......+..++.|||||.++|+-
T Consensus 75 ~fl~~~~i~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 75 GFLPYETILGTMLHELAHNVHGPH 98 (186)
T ss_pred CEeeHHHHHHHHHHHHHhcccCCc
Confidence 334456789999999999999873
No 49
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=41.16 E-value=67 Score=32.82 Aligned_cols=116 Identities=10% Similarity=0.050 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHcC
Q 002859 565 DRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLG 644 (873)
Q Consensus 565 ~Ra~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg 644 (873)
-|.+++.=...+.++|.++...+.+++..|-.|-+..|=.......+.+-+.++..+.. ...+. +|+-..+..|.
T Consensus 4 kr~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~~~-~~~~l----dLlP~~Ls~L~ 78 (223)
T PF14675_consen 4 KRFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGDNK-NGKWL----DLLPKCLSALS 78 (223)
T ss_dssp HHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS---S--STTT----THHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCcc-cchHH----HHHHHHHHHHh
Confidence 37788888888999999999999999999999999998888887777766665532111 11222 23333333331
Q ss_pred Cc---cCCCCCHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHH
Q 002859 645 WD---SKPGESHLDALLRGEIFTALALLGH-KETLNEASKRFHAF 685 (873)
Q Consensus 645 ~~---~~~~~~~~~~~lr~~il~~ac~~~~-~~c~~~A~~~f~~~ 685 (873)
-. ...+....-...+..+++-.|...= +.|+-.-..+|++.
T Consensus 79 ~~~~i~~~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd~ 123 (223)
T PF14675_consen 79 ASESINYNGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRDV 123 (223)
T ss_dssp T-S--SSSS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGGS
T ss_pred cCcccccccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhcC
Confidence 11 1112223457889999999998763 35665555666543
No 50
>PRK01345 heat shock protein HtpX; Provisional
Probab=38.96 E-value=64 Score=35.05 Aligned_cols=68 Identities=28% Similarity=0.273 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccc---cccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 002859 237 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 313 (873)
Q Consensus 237 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamen---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 313 (873)
..++++-+.+..|+| .+++-++-.+..++-+... -+.|.+.+. |+-. .+...+..++|||++|.==++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~g-LL~~------L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTG-LLQR------LSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 456666777778865 4565554333333323322 123444443 3221 134578999999999986554
No 51
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=37.88 E-value=1.7e+02 Score=32.35 Aligned_cols=117 Identities=16% Similarity=0.246 Sum_probs=72.4
Q ss_pred hhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHhccCCCcH--------HHHHHH----HHHHHHHHHHHhccChhHHH-HH
Q 002859 563 ETDRFGILDDHFALC-MARQQTLTSLLTLMASYSEETEY--------TVLSNL----ITISYKIGRIAADARPELLD-YL 628 (873)
Q Consensus 563 ~~~Ra~li~D~~~la-~~g~l~~~~~l~l~~~l~~E~~~--------~~w~~~----~~~l~~l~~~~~~~~~~~~~-~~ 628 (873)
+.||.++|+|+..-. -+..++|..=|.+++.-++|-.+ .+|... ...|..|.+.+... |+..+ .+
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~-p~l~nLl~ 390 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDEN-PELANLLL 390 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcC-cchhhhhc
Confidence 678999999985544 45567899999999887776554 234431 11234444444332 22221 22
Q ss_pred HHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCCCCCCcchhh
Q 002859 629 KQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRK 700 (873)
Q Consensus 629 ~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~~~~-~c~~~A~~~f~~~~~~~~~~~i~~dlr~ 700 (873)
..|+.+++.. ...-+|. ++..|...|.+ +|...|...|+.|.. ..+|++|.+
T Consensus 391 ~pyF~~~~~~---------------~~~~~R~-vV~~a~~~giP~P~~ssalsy~Dsyr~----~~lpaNLiQ 443 (473)
T COG0362 391 APYFKSILEE---------------YQQSLRR-VVAYAVEAGIPVPAFSSALSYYDSYRT----ARLPANLIQ 443 (473)
T ss_pred CHHHHHHHHH---------------HHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHhhh----ccccHHHHH
Confidence 3333333332 1233444 55677888988 999999999999964 368888876
No 52
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=37.81 E-value=1.1e+02 Score=23.34 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHhh
Q 002859 814 ASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKELA 869 (873)
Q Consensus 814 ~t~~~l~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~i~~wL~~~~ 869 (873)
-|.+++..|+++|..++.|+... ++.+...+ ..+...|..|+.+.-
T Consensus 7 ~t~~q~~~L~~~f~~~~~p~~~~-----~~~la~~l-----~l~~~~V~~WF~nrR 52 (57)
T PF00046_consen 7 FTKEQLKVLEEYFQENPYPSKEE-----REELAKEL-----GLTERQVKNWFQNRR 52 (57)
T ss_dssp SSHHHHHHHHHHHHHSSSCHHHH-----HHHHHHHH-----TSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccccccc-----cccccccc-----cccccccccCHHHhH
Confidence 47899999999999877664432 12222222 233344999998654
No 53
>PRK10301 hypothetical protein; Provisional
Probab=37.30 E-value=1.9e+02 Score=26.61 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=18.8
Q ss_pred CCeEEEEEeCCccCCceEEEEEEEEe
Q 002859 84 ADEILVLEFAETLPTGMGVLAIGFEG 109 (873)
Q Consensus 84 ~~~~l~i~l~~~L~~g~~~l~i~y~g 109 (873)
+...+.+.++.+|.+|.|+++-.-.+
T Consensus 84 ~~~~~~v~l~~~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 84 DQKQLIVPLADSLKPGTYTVDWHVVS 109 (124)
T ss_pred CCcEEEEECCCCCCCccEEEEEEEEe
Confidence 34567888888899999987644433
No 54
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=37.13 E-value=88 Score=31.08 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q 002859 297 RVATVVAHELAHQW 310 (873)
Q Consensus 297 ~~~~~iaHElaHqW 310 (873)
..+.++||||+|+.
T Consensus 130 ~~a~~~AHElGH~l 143 (194)
T cd04269 130 LFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHhhc
Confidence 46789999999996
No 55
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=36.49 E-value=33 Score=38.44 Aligned_cols=108 Identities=23% Similarity=0.272 Sum_probs=59.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhCCCCCCC--CcceeecCCCCcccccccccceeccccccccCCCChh-HHHHHHHHH
Q 002859 225 GKANQGKFALNVAVKTLELYKEYFAVPYSLP--KLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAA-ANKQRVATV 301 (873)
Q Consensus 225 ~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~--k~d~v~~p~~~~gamen~gli~~~e~~ll~~~~~~~~-~~~~~~~~~ 301 (873)
+...-+..|-..+.++.+||.+.||.. .+. -+.++..-.| | -++.-.......++|....... .....-..+
T Consensus 266 ~~~~a~~dAh~~~g~vyD~yk~~fgr~-S~Dn~g~~l~s~vHy--G--~~ynNAfWdG~qMvyGDGDG~~f~~~S~sLDV 340 (507)
T COG3227 266 SSDEAAVDAHYNAGKVYDYYKNTFGRN-SYDNNGMPLVSTVHY--G--KNYNNAFWDGDQMVYGDGDGSFFTPFSGSLDV 340 (507)
T ss_pred cchhhhHHHHhhcchHHHHHHHHhccc-CcCCCCCceEEEEee--c--cccccccccCceeEeecCCcceecccccccce
Confidence 334455667778899999999999932 333 3444443333 2 1222222223334443321100 001112458
Q ss_pred HHHHHHHHH---hcCccccCccchhhhhhhHHHHHHHHHHh
Q 002859 302 VAHELAHQW---FGNLVTMEWWTHLWLNEGFATWVSYLAAD 339 (873)
Q Consensus 302 iaHElaHqW---fGnlVt~~~w~d~WL~EGfa~y~~~~~~~ 339 (873)
+||||.|-- --+|+.-..-. =|||+|+.-+.-.+..
T Consensus 341 vAHElTHGvtq~tA~L~Y~~qsG--ALNEsfSDvfG~~i~~ 379 (507)
T COG3227 341 VAHELTHGVTQQTAGLIYRGQSG--ALNESFSDVFGTLIEQ 379 (507)
T ss_pred ehhhhcchhhhhccCceecCCCC--chhhHHHHHHHHHHHH
Confidence 999999954 44565554332 4899999998855433
No 56
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=36.41 E-value=51 Score=31.00 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCcce
Q 002859 237 AVKTLELYKEYFAVPYSLPKLDM 259 (873)
Q Consensus 237 ~~~~l~~~e~~fg~~yp~~k~d~ 259 (873)
..+.++-.+.+|+-+||.++...
T Consensus 7 L~~~~~~as~~~~r~~~~p~~~~ 29 (156)
T COG3091 7 LQQCVEQASLKFFRKFFRPKASY 29 (156)
T ss_pred HHHHHHHHHHHhcCCCCCcceeh
Confidence 44555555555555898887543
No 57
>PRK02391 heat shock protein HtpX; Provisional
Probab=36.18 E-value=67 Score=34.54 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCccccc---ccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 002859 237 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 313 (873)
Q Consensus 237 ~~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~game---n~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 313 (873)
..+.++-+.+..|+| .|++-++-.+..++.+.. +-+.|.+.+. ++ +. -+..++..++|||++|--=++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~~-----L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTG-LM-RR-----LDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHH-HH-hh-----CCHHHHHHHHHHHHHHHHcCC
Confidence 445555666777754 466665554433222222 1223444333 22 11 124568999999999976654
No 58
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.98 E-value=1.3e+02 Score=26.78 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcchHHHHHHhhccCCCHHHHHHHHHHhhc--------------CCCchHHHHHHHHHHHHH
Q 002859 781 AWKWLKDNWDHISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSS--------------RCKPYIARTLRQSIERVQ 846 (873)
Q Consensus 781 ~~~fl~~n~~~i~~~~~~~~~l~~~i~~~~~~~~t~~~l~~~~~Ff~~--------------~~~~~~~~~~~~~le~i~ 846 (873)
.|+|+++||..|..-++.. .+-+..-+.+.+.+.++++++++=+.. -|+..--..++-.+..++
T Consensus 1 ~~~~~~~~w~ii~a~~~~~--~~~~~~~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~ 78 (106)
T PF10805_consen 1 MWEFIKKNWGIIWAVFGIA--GGIFWLWLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELR 78 (106)
T ss_pred ChHHHHhCcHHHHHHHHHH--HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3899999999988766421 222333356667787777777443332 233333455566666666
Q ss_pred HHHHHHHHh
Q 002859 847 INAKWVESI 855 (873)
Q Consensus 847 ~ni~W~~~~ 855 (873)
..++=++..
T Consensus 79 G~~~~l~~~ 87 (106)
T PF10805_consen 79 GELKELSAR 87 (106)
T ss_pred hHHHHHHHH
Confidence 555554443
No 59
>PRK01265 heat shock protein HtpX; Provisional
Probab=35.95 E-value=60 Score=35.27 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCcccccc---cccceeccccccccCCCChhHHHHHHHHHHHHHHHHHHhc
Q 002859 238 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 312 (873)
Q Consensus 238 ~~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamen---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 312 (873)
.+.++-+.+..|+ |.|++-++-.+...+-+... -+-|...+. ++ +. .+...+..++|||++|-=-+
T Consensus 86 ~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~-----l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 86 YSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAGKRIAITLP-LL-KI-----LNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCCCEEEEehH-HH-hh-----CCHHHHHHHHHHHHHHHHcc
Confidence 4555566667775 45676555443322222111 133444333 22 11 13457899999999995443
No 60
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.32 E-value=5.3e+02 Score=32.11 Aligned_cols=134 Identities=16% Similarity=0.118 Sum_probs=74.9
Q ss_pred ChhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Q 002859 562 SETDRFGILDDHFALCMARQQTL-TSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSA 640 (873)
Q Consensus 562 ~~~~Ra~li~D~~~la~~g~l~~-~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 640 (873)
|...|-|+-.=.-.-..+.+... ..+++-++++-+-++...|..++-.|..|-+.++-...+.+.-+..-+..++..++
T Consensus 102 p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il 181 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDIL 181 (1010)
T ss_pred chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 66667766444434444444422 45677777776778888999999999988877752222233333333333333322
Q ss_pred H---HcCCccCCCCCHHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHhc-------CC---CCCCCCcchhh
Q 002859 641 E---KLGWDSKPGESHLDALLRGEIF---TALALLGHKETLNEASKRFHAFLA-------DR---TTPLLPPDIRK 700 (873)
Q Consensus 641 ~---~lg~~~~~~~~~~~~~lr~~il---~~ac~~~~~~c~~~A~~~f~~~~~-------~~---~~~~i~~dlr~ 700 (873)
+ .|+ ..++.....+..+|+ ..+|.+..|.-+ -+.+.|..||. .+ ..-.++|+.|+
T Consensus 182 ~~~~~ll----~~~s~~s~el~klIlKifks~~~~~LP~~L-~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~ 252 (1010)
T KOG1991|consen 182 QIFNGLL----SQESYQSVELQKLILKIFKSLIYYELPLEL-SAPETFTSWMELFLSILNRPVPVEVLSLDPEDRS 252 (1010)
T ss_pred HHHHhhc----cccchHHHHHHHHHHHHHHHHHHHhCCHHh-hCchhHHHHHHHHHHHHcCCCChhcccCChhhcc
Confidence 2 222 123444445555544 567777766544 34566777763 11 23457888887
No 61
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=32.31 E-value=29 Score=33.98 Aligned_cols=13 Identities=46% Similarity=0.527 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 002859 298 VATVVAHELAHQW 310 (873)
Q Consensus 298 ~~~~iaHElaHqW 310 (873)
-..++||||+||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 4567999999998
No 62
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.57 E-value=1.1e+02 Score=36.44 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCCCCCCCcchhh-hhheeeeeecccCCHHHHHHHHHHHHc
Q 002859 650 GESHLDALLRGEIFTALAL-LGHKETLNEASKRFHAFLADRTTPLLPPDIRK-AAYVAVMQKVSASDRSGYESLLRVYRE 727 (873)
Q Consensus 650 ~~~~~~~~lr~~il~~ac~-~~~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~-~vy~~~~~~~~~g~~~~~~~l~~~y~~ 727 (873)
+|+.-++..|.+.+..||- +|.++ .|..+.++...+ -+|-+|. -+|...+.-+-.|+......|+.---+
T Consensus 494 ~ETQHeki~RGl~vGiaL~~ygrqe---~Ad~lI~el~~d-----kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs 565 (929)
T KOG2062|consen 494 QETQHEKIIRGLAVGIALVVYGRQE---DADPLIKELLRD-----KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS 565 (929)
T ss_pred hhhhHHHHHHHHHHhHHHHHhhhhh---hhHHHHHHHhcC-----CchhhhhhhHHHHHHHHhccCchhhHHHhhccccc
Confidence 4666678999999999986 45543 566666666543 2566774 455444443446777778888776555
Q ss_pred CCCHHHHHHHHHHhC--CCCCHHHHHHHHHHhccC---cCCcccceeeee--eccccHHHHHHHH
Q 002859 728 TDLSQEKTRILSSLA--SCPDVNIVLEVLNFLLSS---EVRSQDAVYGLA--VSIEGRETAWKWL 785 (873)
Q Consensus 728 s~~~~ek~~~l~aL~--cs~d~~ll~~~L~~~l~~---~i~~qd~~~~~~--v~~~g~~~~~~fl 785 (873)
..+.+-|+...-||| |++||+.+-++++++-.. .||---. .++. .+..|...|.+-+
T Consensus 566 D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA-~ALGIaCAGtG~~eAi~lL 629 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAA-MALGIACAGTGLKEAINLL 629 (929)
T ss_pred ccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHH-HHHhhhhcCCCcHHHHHHH
Confidence 556667888787877 899999999988875432 3443221 1122 3444666665543
No 63
>PF13934 ELYS: Nuclear pore complex assembly
Probab=30.16 E-value=4e+02 Score=27.27 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=63.1
Q ss_pred CCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhCCCCCHHHHHHHHHHhccCcCCcccce-ee
Q 002859 693 LLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDL-SQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAV-YG 770 (873)
Q Consensus 693 ~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~-~~ek~~~l~aL~cs~d~~ll~~~L~~~l~~~i~~qd~~-~~ 770 (873)
.||+.++..+-+.. .=|..+|+.-.+....... +..-..|+.+|.+..++.+.-+|+... .+...+.+.. ..
T Consensus 74 ~ip~~~~~~~~g~W-----~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~-~p~l~s~~~~~~~ 147 (226)
T PF13934_consen 74 GIPPKYIKFIQGFW-----LLDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAV-GPPLSSPEALTLY 147 (226)
T ss_pred CCCHHHHHHHHHHH-----HhChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhc-CCCCCCHHHHHHH
Confidence 48888887443222 2356678777777665544 444567999999999999998888764 3444444433 33
Q ss_pred ee-eccccHHHHHHHHHHHHHHH
Q 002859 771 LA-VSIEGRETAWKWLKDNWDHI 792 (873)
Q Consensus 771 ~~-v~~~g~~~~~~fl~~n~~~i 792 (873)
+. ++++...-||.|.+..-+..
T Consensus 148 ~~~La~~~v~EAf~~~R~~~~~~ 170 (226)
T PF13934_consen 148 FVALANGLVTEAFSFQRSYPDEL 170 (226)
T ss_pred HHHHHcCCHHHHHHHHHhCchhh
Confidence 44 66678888999988766543
No 64
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=29.97 E-value=41 Score=33.53 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q 002859 296 QRVATVVAHELAHQW 310 (873)
Q Consensus 296 ~~~~~~iaHElaHqW 310 (873)
.....++||||+|.+
T Consensus 140 ~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 140 YNGAITFAHEIGHNL 154 (196)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CceehhhHHhHHHhc
Confidence 456789999999997
No 65
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.85 E-value=4.8e+02 Score=29.75 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=44.9
Q ss_pred EecCCCCeEEEEEEEEEEEECC--CCEEEEEeCC---ceeeEEEEeeccCCCCcc--ccceeEEEecCCeEEEEEeCCcc
Q 002859 24 TPDLTSCKFGGSVAIDVDVVGD--TKFIVLNAAD---LTINNRSVSFTNKVSSKA--LEPTKVELVEADEILVLEFAETL 96 (873)
Q Consensus 24 ~~~~~~~~~~G~v~I~~~~~~~--~~~i~L~~~~---l~i~~v~i~~~~~~~~~~--~~~~~~~~~~~~~~l~i~l~~~L 96 (873)
.+|+.+....=++.|+++...+ .+...+-... -.+..+++...+...... .....+......+...|.|++||
T Consensus 10 ~idl~~~~vk~~~~i~i~N~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~pl 89 (432)
T PF04597_consen 10 TIDLSKSYVKETIEITIKNIGDEPVSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVNSGSEIKYYEITLPKPL 89 (432)
T ss_pred EEEccCcEEEEEEEEEEEECCCCCceEEEEEECchhhccEEEEEEEECCCccccccccccccccCCCCcceEEEECCCCC
Confidence 4566666666667777776543 3444433322 122333333221111000 11122222223456899999999
Q ss_pred CCc-eEEEEEEEE
Q 002859 97 PTG-MGVLAIGFE 108 (873)
Q Consensus 97 ~~g-~~~l~i~y~ 108 (873)
.|| +.+|.++|.
T Consensus 90 ~~~~~~~l~v~~~ 102 (432)
T PF04597_consen 90 APGEKVTLTVEYV 102 (432)
T ss_pred CCCCEEEEEEEEE
Confidence 999 888888876
No 66
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=29.53 E-value=36 Score=29.84 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHh
Q 002859 297 RVATVVAHELAHQWF 311 (873)
Q Consensus 297 ~~~~~iaHElaHqWf 311 (873)
....+++||++|-|=
T Consensus 78 GC~~TL~HEL~H~WQ 92 (141)
T PHA02456 78 GCRDTLAHELNHAWQ 92 (141)
T ss_pred chHHHHHHHHHHHHh
Confidence 456789999999993
No 67
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=29.19 E-value=2.6e+02 Score=30.86 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeccccccccCCCChhHHHHHHHHHHHHHH-HH---------
Q 002859 239 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHEL-AH--------- 308 (873)
Q Consensus 239 ~~l~~~e~~fg~~yp~~k~d~v~~p~~~~gamen~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEl-aH--------- 308 (873)
.+=++..+|++ .. --++.+...++..++||-.-+-|.++.+. ......+..++.||+ .|
T Consensus 117 ~~~~~~~~y~~-~~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~---------~fs~~~l~~L~~HEigvH~lt~~Ng~~ 185 (349)
T PF08014_consen 117 RLQERLKKYFG-KE-GFEVKVELSDDLLARAMVSGDRLKINKNA---------MFSERDLEALLHHEIGVHLLTTLNGRA 185 (349)
T ss_pred HHHHHHHHHhc-cc-CceEEEEEcCCcchhhcccCCeeEEcCCC---------CcCHHHHHHHHHHhhhhhhcccccccc
Confidence 33445566666 22 22455666677877777655555555442 123457888999999 45
Q ss_pred ---HHhcCccccCccchhhhhhhHHHHHHHHH
Q 002859 309 ---QWFGNLVTMEWWTHLWLNEGFATWVSYLA 337 (873)
Q Consensus 309 ---qWfGnlVt~~~w~d~WL~EGfa~y~~~~~ 337 (873)
.|++.-.-+. .=..||+|.+.|++.
T Consensus 186 QPl~~l~~Glp~~----~~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 186 QPLKILSLGLPGY----TPTQEGLAVLSEYLS 213 (349)
T ss_pred CCcHHhCCCCCCC----CCCchHHHHHHHHHh
Confidence 2333221111 113699999999764
No 68
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=27.50 E-value=1.3e+02 Score=22.84 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHhhc
Q 002859 814 ASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKELAY 870 (873)
Q Consensus 814 ~t~~~l~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~i~~wL~~~~~ 870 (873)
.+.+++..++++|..++.|+... ++.+...+.+-. .. |..|+++.-.
T Consensus 7 ~~~~~~~~Le~~f~~~~~P~~~~-----~~~la~~~~l~~---~q--V~~WF~nrR~ 53 (59)
T cd00086 7 FTPEQLEELEKEFEKNPYPSREE-----REELAKELGLTE---RQ--VKIWFQNRRA 53 (59)
T ss_pred CCHHHHHHHHHHHHhCCCCCHHH-----HHHHHHHHCcCH---HH--HHHHHHHHHH
Confidence 46888999999999877664322 222333333322 34 9999987643
No 69
>PF13205 Big_5: Bacterial Ig-like domain
Probab=27.02 E-value=3.9e+02 Score=23.04 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.3
Q ss_pred cCCeEEEEEeCCccCCc-eEEEEEEEE
Q 002859 83 EADEILVLEFAETLPTG-MGVLAIGFE 108 (873)
Q Consensus 83 ~~~~~l~i~l~~~L~~g-~~~l~i~y~ 108 (873)
..+..+.|.+.++|.+| .|+|.|.-.
T Consensus 59 ~~~~~~~i~p~~~L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 59 WDGNTLTITPSQPLKPGTTYTVTIDSG 85 (107)
T ss_pred ccCCEEEEEECCcCCCCCEEEEEECCC
Confidence 55688999999999999 999998554
No 70
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=25.64 E-value=57 Score=32.83 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=19.6
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHHHHhcCcc
Q 002859 284 LYDDQHSAAANKQRVATVVAHELAHQWFGNLV 315 (873)
Q Consensus 284 l~~~~~~~~~~~~~~~~~iaHElaHqWfGnlV 315 (873)
+|++........-.+-.+|||||.|-.-...+
T Consensus 22 ~f~~~~p~~~~yg~lG~ilahel~hafd~~g~ 53 (206)
T PF01431_consen 22 FFDPNYPPALNYGGLGFILAHELMHAFDPEGI 53 (206)
T ss_dssp T--TTS-HHHHHHTHHHHHHHHHHHCTSTTGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 44555455555556778999999997644333
No 71
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=25.36 E-value=1.5e+02 Score=31.95 Aligned_cols=50 Identities=24% Similarity=0.422 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHhh
Q 002859 820 REVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNE--------GHLAEAVKELA 869 (873)
Q Consensus 820 ~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~--------~~i~~wL~~~~ 869 (873)
-.+++|.+..+.....+.+++-++.|+.|..|+++.++. ..|.+|+++..
T Consensus 228 ~~LKr~~K~~k~~~~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~~ 285 (299)
T PF03715_consen 228 VQLKRFLKSCKNAKFKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESELK 285 (299)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHhcc
Confidence 568899888776788999999999999999999986543 44888887653
No 72
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=25.27 E-value=1.4e+02 Score=27.54 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=17.1
Q ss_pred cCCeEEEEEeCCccCCceEEEEEEE
Q 002859 83 EADEILVLEFAETLPTGMGVLAIGF 107 (873)
Q Consensus 83 ~~~~~l~i~l~~~L~~g~~~l~i~y 107 (873)
.....+.+.++.+|.+|.|.+.+..
T Consensus 83 ~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 83 GGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp T-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred CCEEEEEEEEcCccCCCeEEEEEEE
Confidence 4455677788888999999998888
No 73
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=25.16 E-value=1.4e+02 Score=24.31 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=38.7
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCC
Q 002859 392 GASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE 439 (873)
Q Consensus 392 g~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~ 439 (873)
=+.++.+|...++.+.+ .-|..++++++-+-++-++|.+.+....|.
T Consensus 11 F~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 35789999999999885 456666677888889999999999988883
No 74
>PLN03218 maturation of RBCL 1; Provisional
Probab=25.06 E-value=1.6e+03 Score=29.04 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=12.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHh
Q 002859 733 EKTRILSSLASCPDVNIVLEVLNFL 757 (873)
Q Consensus 733 ek~~~l~aL~cs~d~~ll~~~L~~~ 757 (873)
--..++.+++...+.+...++++.+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3444555555555555555555444
No 75
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=24.68 E-value=77 Score=26.39 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=41.1
Q ss_pred CcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC
Q 002859 695 PPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS 760 (873)
Q Consensus 695 ~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~~~l~aL~cs~d~~ll~~~L~~~l~~ 760 (873)
++..|..+..+++ +.++.+....+.+.. +..++.-|...+.+||+..++..+..+...+.++
T Consensus 13 ~~~vr~~a~~~L~---~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 13 DPQVRAEAARALG---ELGDPEAIPALIELL-KDEDPMVRRAAARALGRIGDPEAIPALIKLLQDD 74 (88)
T ss_dssp SHHHHHHHHHHHH---CCTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHH---HcCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 4566654333333 345666667777766 5677888888888888888888777777665543
No 76
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=24.51 E-value=1.4e+02 Score=22.51 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHhhcc
Q 002859 814 ASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKELAYR 871 (873)
Q Consensus 814 ~t~~~l~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~i~~wL~~~~~~ 871 (873)
-+.+++..++++|..++.|+... + +.+...+..- ... |..|+.+...|
T Consensus 7 ~~~~~~~~L~~~f~~~~~P~~~~-~----~~la~~~~l~---~~q--V~~WF~nrR~~ 54 (56)
T smart00389 7 FTPEQLEELEKEFQKNPYPSREE-R----EELAAKLGLS---ERQ--VKVWFQNRRAK 54 (56)
T ss_pred CCHHHHHHHHHHHHhCCCCCHHH-H----HHHHHHHCcC---HHH--HHHhHHHHhhc
Confidence 47889999999999887654322 1 1222222111 234 99999887655
No 77
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=24.21 E-value=3.4e+02 Score=26.58 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCc
Q 002859 294 NKQRVATVVAHELAHQWFGNLVTMEW 319 (873)
Q Consensus 294 ~~~~~~~~iaHElaHqWfGnlVt~~~ 319 (873)
.+..+..+++|||.|.|=--...++|
T Consensus 67 ~~~~l~~~l~HELIHayD~cr~kvD~ 92 (173)
T PF09768_consen 67 SQGHLEDTLTHELIHAYDHCRAKVDW 92 (173)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 45568899999999998443444444
No 78
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=23.25 E-value=2e+02 Score=30.93 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 002859 295 KQRVATVVAHELAHQWFGN 313 (873)
Q Consensus 295 ~~~~~~~iaHElaHqWfGn 313 (873)
...++.+++||+|||=-+.
T Consensus 272 ddglAtvLgHE~aHaVarH 290 (424)
T KOG2661|consen 272 DDGLATVLGHEIAHAVARH 290 (424)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4568999999999997764
No 79
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=23.19 E-value=2.7e+02 Score=22.34 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHH
Q 002859 815 SYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKE 867 (873)
Q Consensus 815 t~~~l~~~~~Ff~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~i~~wL~~ 867 (873)
+...+++++.||...|. .....+-+-|-......++.+-... +..+++.
T Consensus 12 ~kK~i~~v~~FF~~DPl--GqkIa~l~kdw~~~~~~~r~KiR~~--L~ey~k~ 60 (64)
T PF05596_consen 12 VKKWIEEVRNFFYEDPL--GQKIAQLAKDWNEICQEVRKKIRAA--LAEYCKG 60 (64)
T ss_pred HHHHHHHHHHHhccCch--HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 45678999999987653 3444444555555556666665555 6666654
No 80
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=22.25 E-value=1e+02 Score=34.44 Aligned_cols=64 Identities=27% Similarity=0.414 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCCCCCCCcceeec--CCCCc-----ccccccccceeccccccccCCCChhHHHHHHHHHHHHHHHHHH
Q 002859 240 TLELYKEYFAVPYSLPKLDMIAI--PDFAA-----GAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 310 (873)
Q Consensus 240 ~l~~~e~~fg~~yp~~k~d~v~~--p~~~~-----gamen~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 310 (873)
-++.+.+-.| +|..|+-++-. |.-.. |---+-.+++|.. ++-++. ..+.+++..+++||++|--
T Consensus 222 ~Ie~la~s~g--fp~~k~~vi~~s~rs~hsNAyfyG~~~~KRIvIyDt--Ll~~~~---~~~~eel~AVl~HELGHW~ 292 (428)
T KOG2719|consen 222 KIERLADSVG--FPLSKYRVIDGSKRSSHSNAYFYGLCKNKRIVIYDT--LLLEEE---HLNNEELVAVLAHELGHWK 292 (428)
T ss_pred HHHHHHHhcC--CCceEEEEEecCCCCCCCCeeeeeccccceEEEehh--hhhhhh---ccccHHHHHHHHHHhhHHH
Confidence 3444455555 89999888874 22111 1111223334332 221100 0133578999999999954
No 81
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=21.65 E-value=1.7e+02 Score=29.79 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHH
Q 002859 298 VATVVAHELAHQW 310 (873)
Q Consensus 298 ~~~~iaHElaHqW 310 (873)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 4789999999985
No 82
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=21.59 E-value=53 Score=28.38 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=21.4
Q ss_pred HHHhhCHHHHHHHHHHHHHHhccCCCChH
Q 002859 399 LQNYLGAECFQRSLASYIKKYACSNAKTE 427 (873)
Q Consensus 399 L~~~lG~~~F~~~l~~yl~~~~~~~~~~~ 427 (873)
++.+||++.|....+.|+.++.-.+.+..
T Consensus 55 ~~~llG~~~f~~la~~y~~~~p~~s~~l~ 83 (94)
T PF09836_consen 55 VRALLGEEFFDALARAYIRAHPSRSPDLN 83 (94)
T ss_dssp GGGGS-HHHHHHHHHHHHHSGGGG-S-GG
T ss_pred HHHHhCHHHHHHHHHHHHHhCCCCCCcHH
Confidence 45678999999999999999876655543
No 83
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=21.56 E-value=1e+02 Score=30.70 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHH
Q 002859 296 QRVATVVAHELAHQ 309 (873)
Q Consensus 296 ~~~~~~iaHElaHq 309 (873)
...+.++|||++|.
T Consensus 129 ~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 129 LSFAVIIAHELGHN 142 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45788999999995
No 84
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.39 E-value=23 Score=40.45 Aligned_cols=36 Identities=22% Similarity=0.490 Sum_probs=24.3
Q ss_pred cceecccc---ccccCCCChhHHHHHHHHHHHHHHHHHH
Q 002859 275 LVTYRETA---LLYDDQHSAAANKQRVATVVAHELAHQW 310 (873)
Q Consensus 275 li~~~e~~---ll~~~~~~~~~~~~~~~~~iaHElaHqW 310 (873)
.|+|.-.- -+|+++.++..+.-.+-.+|+|||.|..
T Consensus 461 ~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgF 499 (654)
T COG3590 461 EIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGF 499 (654)
T ss_pred eEeeeHHhcCCCCCCCCcchhhcccCccceehhhhcccc
Confidence 45555441 2456665666666677899999999965
Done!