Query 002860
Match_columns 873
No_of_seqs 452 out of 1947
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 12:15:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1244 Predicted transcriptio 99.1 1.4E-11 3E-16 129.1 0.8 106 478-642 220-330 (336)
2 COG1246 ArgA N-acetylglutamate 99.1 1.3E-10 2.9E-15 114.7 6.2 90 737-830 38-128 (153)
3 KOG0956 PHD finger protein AF1 99.0 2.7E-10 5.8E-15 131.3 5.1 143 503-651 19-188 (900)
4 PRK10314 putative acyltransfer 98.9 3.3E-09 7.2E-14 105.4 9.7 82 744-826 51-135 (153)
5 PF13508 Acetyltransf_7: Acety 98.9 9.3E-09 2E-13 90.0 10.5 76 742-822 4-79 (79)
6 KOG4323 Polycomb-like PHD Zn-f 98.9 1.5E-09 3.3E-14 123.1 6.0 211 480-711 81-300 (464)
7 PF00583 Acetyltransf_1: Acety 98.8 1.7E-08 3.8E-13 87.7 9.4 74 747-821 2-83 (83)
8 PF15446 zf-PHD-like: PHD/FYVE 98.8 4.4E-09 9.5E-14 104.5 5.0 133 484-622 1-143 (175)
9 KOG4299 PHD Zn-finger protein 98.8 1.1E-08 2.4E-13 118.6 7.9 58 473-539 242-305 (613)
10 PF13673 Acetyltransf_10: Acet 98.8 4E-08 8.7E-13 90.8 10.2 74 741-820 44-117 (117)
11 KOG1512 PHD Zn-finger protein 98.8 2.1E-09 4.6E-14 113.6 1.5 81 503-641 276-361 (381)
12 COG5141 PHD zinc finger-contai 98.6 1.6E-08 3.4E-13 113.4 3.3 123 481-626 192-341 (669)
13 PTZ00330 acetyltransferase; Pr 98.6 1.7E-07 3.7E-12 90.2 10.0 83 742-825 53-141 (147)
14 PRK10146 aminoalkylphosphonic 98.6 1.8E-07 4E-12 89.7 8.8 80 744-824 50-137 (144)
15 PLN02706 glucosamine 6-phospha 98.6 3E-07 6.4E-12 89.5 9.7 82 742-824 54-143 (150)
16 PLN02825 amino-acid N-acetyltr 98.6 2.8E-07 6E-12 108.0 11.1 89 744-834 410-499 (515)
17 PRK07922 N-acetylglutamate syn 98.5 2.9E-07 6.3E-12 92.9 9.4 79 744-825 48-127 (169)
18 cd02169 Citrate_lyase_ligase C 98.5 2.2E-07 4.8E-12 102.2 9.1 74 745-824 10-83 (297)
19 PRK07757 acetyltransferase; Pr 98.5 3.3E-07 7.1E-12 89.4 9.1 82 744-828 44-125 (152)
20 PF13527 Acetyltransf_9: Acety 98.5 7.4E-07 1.6E-11 84.0 10.1 111 700-823 10-127 (127)
21 KOG0955 PHD finger protein BR1 98.5 9.1E-08 2E-12 118.1 5.0 129 479-624 216-366 (1051)
22 KOG0954 PHD finger protein [Ge 98.5 7.3E-08 1.6E-12 112.6 3.2 133 476-623 265-415 (893)
23 TIGR01575 rimI ribosomal-prote 98.5 1E-06 2.3E-11 82.2 10.3 80 744-825 34-116 (131)
24 PRK03624 putative acetyltransf 98.5 5.5E-07 1.2E-11 84.9 8.2 82 743-826 47-131 (140)
25 TIGR01890 N-Ac-Glu-synth amino 98.4 9.9E-07 2.1E-11 101.7 10.6 84 745-830 326-410 (429)
26 COG2153 ElaA Predicted acyltra 98.4 6.8E-07 1.5E-11 87.5 7.6 84 744-828 53-139 (155)
27 KOG0383 Predicted helicase [Ge 98.4 1.3E-07 2.8E-12 112.9 3.1 155 511-707 1-162 (696)
28 TIGR00124 cit_ly_ligase [citra 98.4 1.1E-06 2.3E-11 98.3 9.5 80 741-826 31-110 (332)
29 TIGR02382 wecD_rffC TDP-D-fuco 98.4 1.6E-06 3.5E-11 88.7 9.6 80 745-825 103-185 (191)
30 PRK10975 TDP-fucosamine acetyl 98.4 1.8E-06 4E-11 88.3 9.9 84 741-825 102-188 (194)
31 PRK05279 N-acetylglutamate syn 98.3 1.7E-06 3.7E-11 100.0 10.0 84 744-829 337-421 (441)
32 TIGR03827 GNAT_ablB putative b 98.3 2.7E-06 5.8E-11 91.9 10.8 83 742-825 159-245 (266)
33 PRK09491 rimI ribosomal-protei 98.3 3.6E-06 7.7E-11 81.7 10.5 84 740-825 39-125 (146)
34 KOG0825 PHD Zn-finger protein 98.3 3.2E-07 6.9E-12 107.6 3.0 50 581-641 214-264 (1134)
35 PRK12308 bifunctional arginino 98.3 2.1E-06 4.5E-11 103.3 9.4 82 744-828 506-587 (614)
36 KOG4299 PHD Zn-finger protein 98.3 4.5E-07 9.8E-12 105.5 3.2 49 584-641 255-303 (613)
37 PRK13688 hypothetical protein; 98.2 6.2E-06 1.4E-10 82.7 9.0 76 745-826 49-134 (156)
38 PHA00673 acetyltransferase dom 98.1 1.1E-05 2.5E-10 80.7 10.1 81 744-825 58-146 (154)
39 PRK09831 putative acyltransfer 98.1 6E-06 1.3E-10 80.6 7.9 73 744-827 56-128 (147)
40 COG5034 TNG2 Chromatin remodel 98.1 2.5E-06 5.5E-11 89.9 5.5 49 479-538 218-269 (271)
41 PRK10140 putative acetyltransf 98.1 1.1E-05 2.4E-10 78.7 9.7 85 741-827 51-143 (162)
42 KOG3396 Glucosamine-phosphate 98.1 5.9E-06 1.3E-10 80.1 7.3 84 741-825 53-144 (150)
43 TIGR03448 mycothiol_MshD mycot 98.0 2.7E-05 5.8E-10 84.3 11.4 80 743-825 48-128 (292)
44 KOG3139 N-acetyltransferase [G 98.0 3.6E-05 7.7E-10 76.9 9.5 73 752-825 68-146 (165)
45 TIGR03448 mycothiol_MshD mycot 97.9 2.8E-05 6.1E-10 84.1 9.3 85 740-825 199-288 (292)
46 PF00628 PHD: PHD-finger; Int 97.9 1.7E-06 3.7E-11 70.3 -0.4 49 584-641 1-49 (51)
47 KOG4443 Putative transcription 97.9 4.5E-06 9.8E-11 97.5 2.8 82 502-640 31-115 (694)
48 TIGR02406 ectoine_EctA L-2,4-d 97.9 3.8E-05 8.2E-10 76.5 9.0 82 743-825 41-128 (157)
49 PF08445 FR47: FR47-like prote 97.9 6.3E-05 1.4E-09 68.0 8.9 73 751-825 8-82 (86)
50 TIGR03103 trio_acet_GNAT GNAT- 97.9 4.4E-05 9.4E-10 90.9 10.1 85 740-825 122-217 (547)
51 PF13420 Acetyltransf_4: Acety 97.9 9.3E-05 2E-09 72.0 10.3 80 744-825 53-139 (155)
52 COG0456 RimI Acetyltransferase 97.9 3.9E-05 8.4E-10 76.1 7.7 76 751-827 72-156 (177)
53 smart00249 PHD PHD zinc finger 97.8 1.4E-05 3.1E-10 62.4 3.6 46 585-640 2-47 (47)
54 PRK10514 putative acetyltransf 97.8 5.5E-05 1.2E-09 72.9 7.8 75 745-827 54-128 (145)
55 PRK01346 hypothetical protein; 97.8 6.8E-05 1.5E-09 85.6 9.6 79 744-825 50-136 (411)
56 cd04301 NAT_SF N-Acyltransfera 97.8 8.5E-05 1.9E-09 59.0 7.4 61 744-804 2-64 (65)
57 COG3393 Predicted acetyltransf 97.8 6.2E-05 1.4E-09 80.6 8.2 84 741-825 177-262 (268)
58 KOG1973 Chromatin remodeling p 97.8 1E-05 2.2E-10 88.3 2.2 50 478-538 215-267 (274)
59 PHA01807 hypothetical protein 97.8 6.8E-05 1.5E-09 75.1 7.5 73 744-816 56-135 (153)
60 PRK10562 putative acetyltransf 97.7 0.00013 2.8E-09 70.9 8.7 76 744-826 51-126 (145)
61 PF00628 PHD: PHD-finger; Int 97.7 1.5E-05 3.3E-10 64.7 1.9 46 484-538 1-50 (51)
62 PRK15130 spermidine N1-acetylt 97.7 0.00023 4.9E-09 72.0 9.9 81 743-825 59-145 (186)
63 TIGR01686 FkbH FkbH-like domai 97.7 0.00019 4.1E-09 79.8 10.1 81 741-823 231-319 (320)
64 KOG1512 PHD Zn-finger protein 97.6 2.1E-05 4.5E-10 84.0 2.1 50 480-538 312-362 (381)
65 PF13523 Acetyltransf_8: Acety 97.6 0.00035 7.5E-09 68.2 10.2 85 740-825 47-141 (152)
66 KOG0383 Predicted helicase [Ge 97.6 2.1E-05 4.6E-10 94.4 2.0 51 478-540 43-95 (696)
67 TIGR03585 PseH pseudaminic aci 97.6 0.00045 9.7E-09 67.2 10.4 80 744-826 54-139 (156)
68 KOG1244 Predicted transcriptio 97.6 2.4E-05 5.3E-10 83.1 1.6 39 502-540 292-332 (336)
69 TIGR01211 ELP3 histone acetylt 97.5 0.00024 5.3E-09 83.9 9.4 77 748-825 421-516 (522)
70 PF13718 GNAT_acetyltr_2: GNAT 97.5 0.00042 9E-09 72.2 10.0 85 740-825 26-176 (196)
71 KOG1473 Nucleosome remodeling 97.5 2.2E-05 4.8E-10 95.7 0.4 132 480-648 342-484 (1414)
72 smart00249 PHD PHD zinc finger 97.5 0.00011 2.4E-09 57.3 3.6 44 484-536 1-47 (47)
73 COG3153 Predicted acetyltransf 97.4 0.00067 1.5E-08 69.2 9.1 137 698-854 12-153 (171)
74 KOG3397 Acetyltransferases [Ge 97.3 0.00029 6.3E-09 71.1 5.4 84 742-827 56-143 (225)
75 PRK10809 ribosomal-protein-S5- 97.3 0.00092 2E-08 68.1 9.1 83 741-825 77-166 (194)
76 KOG4443 Putative transcription 97.3 0.00011 2.3E-09 86.3 2.1 120 502-641 79-200 (694)
77 PF13302 Acetyltransf_3: Acety 97.2 0.0021 4.5E-08 61.1 9.6 79 741-821 56-142 (142)
78 PRK10151 ribosomal-protein-L7/ 97.2 0.0022 4.7E-08 64.4 10.1 81 744-826 70-156 (179)
79 COG1247 Sortase and related ac 97.1 0.0026 5.6E-08 64.9 9.1 109 739-853 50-166 (169)
80 KOG0825 PHD Zn-finger protein 97.0 0.00026 5.6E-09 84.0 1.4 48 482-538 215-265 (1134)
81 KOG1973 Chromatin remodeling p 96.9 0.00037 7.9E-09 76.2 1.5 36 600-642 229-267 (274)
82 COG5034 TNG2 Chromatin remodel 96.8 0.00062 1.3E-08 72.3 2.2 45 583-642 222-269 (271)
83 PF13831 PHD_2: PHD-finger; PD 96.8 0.00028 6E-09 54.1 -0.6 34 504-537 2-36 (36)
84 KOG0957 PHD finger protein [Ge 96.7 0.00079 1.7E-08 76.8 2.6 124 484-622 121-276 (707)
85 KOG3216 Diamine acetyltransfer 96.6 0.022 4.8E-07 57.0 11.2 123 695-825 15-146 (163)
86 KOG0957 PHD finger protein [Ge 96.4 0.0012 2.6E-08 75.3 1.3 47 583-640 545-595 (707)
87 PF12746 GNAT_acetyltran: GNAT 96.3 0.024 5.3E-07 61.8 10.4 79 745-825 169-247 (265)
88 cd04718 BAH_plant_2 BAH, or Br 96.1 0.003 6.5E-08 62.9 2.0 27 612-643 1-27 (148)
89 PF08444 Gly_acyl_tr_C: Aralky 95.9 0.015 3.2E-07 53.4 5.6 74 746-824 4-79 (89)
90 PF12568 DUF3749: Acetyltransf 95.9 0.058 1.3E-06 52.7 9.7 80 741-825 40-125 (128)
91 COG3053 CitC Citrate lyase syn 95.9 0.034 7.5E-07 60.7 9.0 79 741-825 37-115 (352)
92 cd04718 BAH_plant_2 BAH, or Br 95.8 0.0044 9.6E-08 61.7 2.0 25 515-539 1-27 (148)
93 COG1444 Predicted P-loop ATPas 95.5 0.015 3.3E-07 71.0 5.3 58 766-825 532-591 (758)
94 KOG4144 Arylalkylamine N-acety 95.5 0.0089 1.9E-07 59.7 2.6 60 765-825 101-161 (190)
95 KOG0955 PHD finger protein BR1 95.5 0.0093 2E-07 75.0 3.4 56 581-647 218-273 (1051)
96 PF14542 Acetyltransf_CG: GCN5 95.3 0.08 1.7E-06 47.3 7.9 57 745-802 3-59 (78)
97 KOG0956 PHD finger protein AF1 95.3 0.0096 2.1E-07 70.5 2.4 51 581-642 4-56 (900)
98 COG0454 WecD Histone acetyltra 95.3 0.023 5E-07 48.2 4.2 44 771-820 87-130 (156)
99 COG1670 RimL Acetyltransferase 95.2 0.11 2.3E-06 51.1 9.2 87 739-827 64-160 (187)
100 KOG1245 Chromatin remodeling c 94.9 0.0071 1.5E-07 78.6 -0.0 61 580-651 1106-1166(1404)
101 KOG4323 Polycomb-like PHD Zn-f 94.8 0.014 3E-07 67.5 1.9 49 484-539 170-224 (464)
102 KOG2488 Acetyltransferase (GNA 94.7 0.077 1.7E-06 54.9 6.9 78 747-825 98-182 (202)
103 COG4552 Eis Predicted acetyltr 94.7 0.039 8.4E-07 61.7 5.2 84 735-825 35-127 (389)
104 COG2388 Predicted acetyltransf 94.7 0.073 1.6E-06 49.9 6.2 61 739-801 15-75 (99)
105 KOG1245 Chromatin remodeling c 93.8 0.016 3.4E-07 75.5 -0.5 52 479-539 1105-1158(1404)
106 KOG3138 Predicted N-acetyltran 93.1 0.097 2.1E-06 54.4 4.1 61 765-826 89-153 (187)
107 KOG0954 PHD finger protein [Ge 92.9 0.048 1E-06 65.4 1.7 49 582-641 271-319 (893)
108 PF06852 DUF1248: Protein of u 92.8 0.5 1.1E-05 49.0 8.8 83 741-825 47-137 (181)
109 KOG3234 Acetyltransferase, (GN 92.6 0.15 3.3E-06 51.3 4.5 58 764-822 68-128 (173)
110 COG1243 ELP3 Histone acetyltra 92.4 0.11 2.3E-06 60.1 3.7 51 774-825 459-509 (515)
111 COG5141 PHD zinc finger-contai 92.1 0.059 1.3E-06 62.0 1.1 48 583-641 194-241 (669)
112 PF13831 PHD_2: PHD-finger; PD 91.5 0.033 7.1E-07 42.8 -1.2 33 601-640 2-35 (36)
113 PF13480 Acetyltransf_6: Acety 90.7 1.3 2.8E-05 41.8 8.5 66 741-807 71-136 (142)
114 KOG3235 Subunit of the major N 90.7 0.68 1.5E-05 46.9 6.7 81 745-825 45-135 (193)
115 smart00258 SAND SAND domain. 90.5 0.22 4.8E-06 44.2 2.8 50 260-311 19-69 (73)
116 TIGR03694 exosort_acyl putativ 89.6 1.8 3.9E-05 46.7 9.5 81 740-821 55-194 (241)
117 PF01342 SAND: SAND domain; I 86.0 0.31 6.7E-06 44.2 0.8 55 255-311 18-78 (82)
118 COG3981 Predicted acetyltransf 86.0 1.4 3.1E-05 45.2 5.6 67 741-809 70-141 (174)
119 PF00765 Autoind_synth: Autoin 84.4 5.1 0.00011 41.5 9.0 81 740-822 45-152 (182)
120 PRK13834 putative autoinducer 83.8 5.9 0.00013 41.9 9.3 119 697-822 15-162 (207)
121 cd04264 DUF619-NAGS DUF619 dom 83.2 2.4 5.3E-05 39.8 5.4 49 747-795 14-64 (99)
122 PF12861 zf-Apc11: Anaphase-pr 83.0 0.55 1.2E-05 42.9 1.0 59 481-540 20-81 (85)
123 PF14446 Prok-RING_1: Prokaryo 82.5 0.97 2.1E-05 37.9 2.2 34 480-521 3-36 (54)
124 KOG2036 Predicted P-loop ATPas 81.5 1.3 2.7E-05 53.8 3.5 27 766-792 615-641 (1011)
125 KOG1701 Focal adhesion adaptor 80.5 0.3 6.6E-06 55.8 -1.8 47 573-621 384-431 (468)
126 PF07227 DUF1423: Protein of u 79.5 1.9 4E-05 50.2 4.0 56 585-644 131-193 (446)
127 KOG2535 RNA polymerase II elon 79.0 2.8 6.2E-05 47.1 5.0 67 755-825 479-547 (554)
128 KOG1473 Nucleosome remodeling 77.3 1.2 2.6E-05 56.2 1.8 44 584-641 346-389 (1414)
129 PF07897 DUF1675: Protein of u 75.8 4 8.6E-05 45.3 5.0 31 263-297 252-283 (284)
130 PF12678 zf-rbx1: RING-H2 zinc 75.3 0.69 1.5E-05 40.9 -0.8 54 482-537 19-73 (73)
131 PF14446 Prok-RING_1: Prokaryo 75.1 1.9 4.2E-05 36.2 1.8 34 584-622 7-40 (54)
132 PF13832 zf-HC5HC2H_2: PHD-zin 72.5 1.6 3.5E-05 41.0 0.9 32 583-622 56-89 (110)
133 COG3818 Predicted acetyltransf 71.9 9.2 0.0002 37.8 5.9 54 775-828 94-151 (167)
134 PF02474 NodA: Nodulation prot 71.6 5.7 0.00012 40.9 4.6 51 765-816 85-135 (196)
135 COG5628 Predicted acetyltransf 71.2 15 0.00033 35.9 7.0 81 745-830 41-129 (143)
136 cd04265 DUF619-NAGS-U DUF619 d 70.9 7.8 0.00017 36.5 5.0 49 747-795 15-64 (99)
137 KOG2752 Uncharacterized conser 70.3 4.6 0.0001 45.0 3.9 102 502-621 64-167 (345)
138 PF13639 zf-RING_2: Ring finge 68.0 0.41 8.9E-06 37.7 -3.5 43 484-537 2-44 (44)
139 PF13771 zf-HC5HC2H: PHD-like 66.5 2.4 5.1E-05 38.3 0.6 32 583-622 37-70 (90)
140 PF11793 FANCL_C: FANCL C-term 65.9 3.8 8.3E-05 36.0 1.8 53 482-540 2-65 (70)
141 TIGR03019 pepcterm_femAB FemAB 61.5 17 0.00037 40.6 6.4 80 744-824 198-280 (330)
142 PF15446 zf-PHD-like: PHD/FYVE 56.9 6 0.00013 40.6 1.6 35 585-622 2-36 (175)
143 PF01853 MOZ_SAS: MOZ/SAS fami 54.4 45 0.00098 35.0 7.5 84 698-798 26-113 (188)
144 PF04377 ATE_C: Arginine-tRNA- 53.8 56 0.0012 32.2 7.7 61 742-803 40-100 (128)
145 PF13880 Acetyltransf_13: ESCO 52.8 9.8 0.00021 33.7 2.1 27 768-794 8-34 (70)
146 KOG4135 Predicted phosphogluco 49.1 35 0.00077 34.6 5.5 58 765-823 107-168 (185)
147 KOG1734 Predicted RING-contain 48.1 4.6 0.0001 44.1 -0.8 56 480-540 222-280 (328)
148 PRK00756 acyltransferase NodA; 48.0 28 0.0006 35.9 4.6 39 764-803 84-122 (196)
149 PF12261 T_hemolysin: Thermost 46.4 37 0.00081 35.3 5.5 71 747-822 41-139 (179)
150 PF13444 Acetyltransf_5: Acety 45.9 33 0.00071 31.8 4.5 24 763-786 76-99 (101)
151 PLN03238 probable histone acet 43.5 45 0.00097 37.2 5.8 32 767-798 157-188 (290)
152 KOG4628 Predicted E3 ubiquitin 43.3 17 0.00036 41.5 2.5 47 482-540 229-277 (348)
153 PRK14852 hypothetical protein; 43.3 62 0.0014 41.8 7.7 83 743-825 77-181 (989)
154 PF10497 zf-4CXXC_R1: Zinc-fin 41.9 12 0.00026 35.5 1.0 51 478-538 3-69 (105)
155 PF01233 NMT: Myristoyl-CoA:pr 40.9 98 0.0021 31.8 7.3 113 680-803 22-148 (162)
156 PF04958 AstA: Arginine N-succ 40.3 43 0.00094 38.3 5.2 77 694-789 30-145 (342)
157 PF11793 FANCL_C: FANCL C-term 40.2 13 0.00029 32.6 1.0 33 585-620 5-39 (70)
158 PLN00104 MYST -like histone ac 39.9 26 0.00056 41.3 3.5 30 767-796 308-337 (450)
159 KOG2747 Histone acetyltransfer 39.3 25 0.00054 40.7 3.2 23 768-790 263-285 (396)
160 PLN02400 cellulose synthase 36.9 45 0.00098 43.2 5.1 58 478-541 32-89 (1085)
161 PF05502 Dynactin_p62: Dynacti 35.9 51 0.0011 39.4 5.2 33 504-539 3-35 (483)
162 PRK01305 arginyl-tRNA-protein 35.7 1.7E+02 0.0036 32.0 8.6 59 744-803 147-205 (240)
163 KOG1081 Transcription factor N 35.3 13 0.00028 44.1 0.1 66 581-663 88-162 (463)
164 TIGR03245 arg_AOST_alph argini 35.3 62 0.0013 36.9 5.4 50 740-789 55-142 (336)
165 TIGR03243 arg_catab_AOST argin 35.0 64 0.0014 36.8 5.5 50 740-789 54-141 (335)
166 TIGR03244 arg_catab_AstA argin 35.0 68 0.0015 36.6 5.7 50 740-789 54-141 (336)
167 PLN03239 histone acetyltransfe 34.8 43 0.00093 38.3 4.0 32 767-798 215-246 (351)
168 PF13832 zf-HC5HC2H_2: PHD-zin 34.5 24 0.00052 33.0 1.8 30 481-521 54-85 (110)
169 PF13901 DUF4206: Domain of un 34.4 39 0.00085 35.6 3.5 46 480-538 150-197 (202)
170 PRK10456 arginine succinyltran 34.2 64 0.0014 37.0 5.3 50 740-789 56-143 (344)
171 PF02591 DUF164: Putative zinc 33.0 16 0.00034 30.5 0.2 34 481-514 21-54 (56)
172 PLN02436 cellulose synthase A 32.9 52 0.0011 42.7 4.7 57 479-541 33-89 (1094)
173 PHA02929 N1R/p28-like protein; 32.9 18 0.0004 39.2 0.8 55 480-540 172-226 (238)
174 PTZ00064 histone acetyltransfe 31.7 63 0.0014 38.6 4.8 32 767-798 386-417 (552)
175 PF14569 zf-UDP: Zinc-binding 31.6 9.7 0.00021 34.4 -1.3 58 478-541 5-62 (80)
176 PF13901 DUF4206: Domain of un 31.0 44 0.00096 35.2 3.2 34 585-619 155-188 (202)
177 KOG1493 Anaphase-promoting com 30.9 8.5 0.00018 34.6 -1.7 59 481-540 19-80 (84)
178 COG3916 LasI N-acyl-L-homoseri 30.8 2.2E+02 0.0049 30.5 8.3 81 739-820 51-158 (209)
179 KOG2779 N-myristoyl transferas 30.6 2.8E+02 0.006 32.1 9.3 135 680-825 79-241 (421)
180 PLN02638 cellulose synthase A 30.2 41 0.0009 43.5 3.3 58 478-541 13-70 (1079)
181 KOG1632 Uncharacterized PHD Zn 30.1 28 0.00061 39.8 1.7 44 602-649 74-119 (345)
182 KOG1472 Histone acetyltransfer 28.3 15 0.00033 45.5 -0.9 96 735-831 412-511 (720)
183 KOG0804 Cytoplasmic Zn-finger 27.8 22 0.00049 41.5 0.4 46 481-538 174-219 (493)
184 PF10497 zf-4CXXC_R1: Zinc-fin 27.7 18 0.0004 34.4 -0.3 52 584-643 9-70 (105)
185 KOG1246 DNA-binding protein ju 27.4 43 0.00094 43.0 2.9 48 584-643 157-204 (904)
186 PF07649 C1_3: C1-like domain; 26.9 20 0.00044 26.1 -0.1 28 585-618 3-30 (30)
187 KOG1246 DNA-binding protein ju 26.3 50 0.0011 42.5 3.1 49 481-539 154-204 (904)
188 cd00162 RING RING-finger (Real 25.8 22 0.00047 26.6 -0.1 30 507-538 13-43 (45)
189 PLN02189 cellulose synthase 24.5 57 0.0012 42.2 3.1 56 480-541 32-87 (1040)
190 KOG3612 PHD Zn-finger protein 24.4 49 0.0011 39.7 2.3 45 493-538 60-107 (588)
191 KOG1829 Uncharacterized conser 24.1 28 0.00062 42.2 0.4 38 598-647 526-563 (580)
192 COG0143 MetG Methionyl-tRNA sy 23.2 68 0.0015 39.1 3.3 29 583-619 143-171 (558)
193 PF05301 Mec-17: Touch recepto 23.2 1E+02 0.0022 30.3 3.8 47 773-822 54-103 (120)
194 PF00130 C1_1: Phorbol esters/ 22.5 77 0.0017 25.6 2.5 37 480-523 9-45 (53)
195 PF08746 zf-RING-like: RING-li 22.3 31 0.00066 27.6 0.1 39 485-536 1-43 (43)
196 PF14545 DBB: Dof, BCAP, and B 21.9 2.8E+02 0.0061 28.0 6.8 63 739-834 65-127 (142)
197 KOG1081 Transcription factor N 21.9 63 0.0014 38.5 2.6 46 480-538 87-132 (463)
198 PLN02915 cellulose synthase A 21.4 71 0.0015 41.4 3.1 55 481-541 14-68 (1044)
199 COG5027 SAS2 Histone acetyltra 20.7 45 0.00098 38.0 1.1 24 766-789 263-286 (395)
No 1
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.11 E-value=1.4e-11 Score=129.14 Aligned_cols=106 Identities=25% Similarity=0.691 Sum_probs=83.0
Q ss_pred ccCCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCC-----CCCCCCCccccccccccchhhcccccccc
Q 002860 478 KNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASL-----SSIPQGDWYCKYCQNMFERKRFLQHDANA 552 (873)
Q Consensus 478 ~~~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L-----~~vP~g~W~C~~C~~~~~~ek~v~~n~~~ 552 (873)
+.-...+|..|...--. =......++|+.|..|+++-|.+||.. ..|..+.|+|.+|+.
T Consensus 220 ~a~Pn~YCDFclgdsr~--nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~-------------- 283 (336)
T KOG1244|consen 220 IAQPNPYCDFCLGDSRE--NKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY-------------- 283 (336)
T ss_pred cccCCcccceecccccc--ccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce--------------
Confidence 34455689999742100 001113568999999999999999974 357788999999985
Q ss_pred cccCccccccchhhhhhhhhhhcccccccCCceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCCC
Q 002860 553 VEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKG 632 (873)
Q Consensus 553 va~gr~~gvd~ie~i~~rc~R~~k~~~~~~~~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g 632 (873)
|.||+.++ +..+||+||-|++.||++||.| +|.+.|+|
T Consensus 284 --------------------------------csicgtse------nddqllfcddcdrgyhmyclsp----pm~eppeg 321 (336)
T KOG1244|consen 284 --------------------------------CSICGTSE------NDDQLLFCDDCDRGYHMYCLSP----PMVEPPEG 321 (336)
T ss_pred --------------------------------eccccCcC------CCceeEeecccCCceeeEecCC----CcCCCCCC
Confidence 99999764 6789999999999999999997 67889999
Q ss_pred CceecCCchh
Q 002860 633 KWFCCMDCSR 642 (873)
Q Consensus 633 ~WfC~~~C~~ 642 (873)
.|-| .-|-.
T Consensus 322 swsc-~KOG~ 330 (336)
T KOG1244|consen 322 SWSC-HLCLE 330 (336)
T ss_pred chhH-HHHHH
Confidence 9999 77743
No 2
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.08 E-value=1.3e-10 Score=114.73 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=79.0
Q ss_pred eecCcEEEEEeeCCeEEEEEEEE-EeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhH
Q 002860 737 EFGGMYCAILTVNSSVVSAGILR-VFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 815 (873)
Q Consensus 737 ~f~gfy~~vL~~~~~vVsaA~lr-i~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~ 815 (873)
++..|+ +++.+|.+||||.++ +.+.+++||.-+||+|+||++|+|..|++.|+..++.+|++++++.+. . .+-|+
T Consensus 38 ~i~dF~--i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~-~~~~F 113 (153)
T COG1246 38 EIDDFT--IIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-R-SPEFF 113 (153)
T ss_pred HHhhhe--eeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-c-cHHHH
Confidence 456677 458899999999999 789999999999999999999999999999999999999999999984 2 55666
Q ss_pred hccCcEEcCHHHHHH
Q 002860 816 DKFGFKKIDPELLSI 830 (873)
Q Consensus 816 ~~fGF~~i~~~~~~~ 830 (873)
.++||+.++.+++..
T Consensus 114 ~~~GF~~vd~~~LP~ 128 (153)
T COG1246 114 AERGFTRVDKDELPE 128 (153)
T ss_pred HHcCCeECccccCCH
Confidence 679999999966543
No 3
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.00 E-value=2.7e-10 Score=131.31 Aligned_cols=143 Identities=22% Similarity=0.520 Sum_probs=92.6
Q ss_pred CCceEeccC--CCCccccccCCCCCCCCCCccccccccc---------cc--hhhcccccccc----------cccCccc
Q 002860 503 GGNLLPCDG--CPRAFHKECASLSSIPQGDWYCKYCQNM---------FE--RKRFLQHDANA----------VEAGRVS 559 (873)
Q Consensus 503 gG~Ll~Cd~--C~~afH~~CL~L~~vP~g~W~C~~C~~~---------~~--~ek~v~~n~~~----------va~gr~~ 559 (873)
...|+.||+ |.-+.|+.|+++.+||.|.|||+.|... .+ ++..+.+..+. +..-++.
T Consensus 19 eNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHVVCALYIPEVrFg 98 (900)
T KOG0956|consen 19 ENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHVVCALYIPEVRFG 98 (900)
T ss_pred cCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEEEEEeeccceeec
Confidence 458999998 9999999999999999999999999653 11 11222111111 1223344
Q ss_pred cccchhhhhhhhhhhcccccccCCceeeccCCCCCCCCCCCCceeeCC--CCCCccCcccCCcCCCCcccC--CCCCCce
Q 002860 560 GVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLRE--LPKGKWF 635 (873)
Q Consensus 560 gvd~ie~i~~rc~R~~k~~~~~~~~C~iC~~~d~~~sg~~~g~LL~CD--qC~rafHv~CL~p~~~~~L~e--~P~g~Wf 635 (873)
.|...|+|.-..+- .+.-...||||.+.+.. +....|..|.|. .|.++||+.|.+..++-.-++ .-+---|
T Consensus 99 NV~TMEPIiLq~VP----~dRfnKtCYIC~E~Grp-nkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKY 173 (900)
T KOG0956|consen 99 NVHTMEPIILQDVP----HDRFNKTCYICNEEGRP-NKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKY 173 (900)
T ss_pred ccccccceeeccCc----hhhhcceeeeecccCCc-cccccccceecccccchhhhhhhHhhhhccceecccccccccee
Confidence 44444544322111 12233569999876432 122457789998 699999999998776432222 1233468
Q ss_pred ecCCchhhHhHHHHhh
Q 002860 636 CCMDCSRINSVLQNLL 651 (873)
Q Consensus 636 C~~~C~~I~~~LqkLv 651 (873)
| ..|+..+.+|.+-.
T Consensus 174 C-GYCk~HfsKlkk~~ 188 (900)
T KOG0956|consen 174 C-GYCKYHFSKLKKSP 188 (900)
T ss_pred c-hhHHHHHHHhhcCC
Confidence 9 89999999998743
No 4
>PRK10314 putative acyltransferase; Provisional
Probab=98.94 E-value=3.3e-09 Score=105.40 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=72.1
Q ss_pred EEEeeCCeEEEEEEEEEeCC--ceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhc-CceEEEecchhhHHHHhHhccCc
Q 002860 744 AILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEAESIWTDKFGF 820 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g~--~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~l-gV~~lvlpA~~~a~~~w~~~fGF 820 (873)
+++..++++||+|++...+. ..++|.+|||+++|||+|+|+.||+.+++.++.. +...++|.|...|+.||.+ |||
T Consensus 51 ~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k-~GF 129 (153)
T PRK10314 51 ILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQS-FGF 129 (153)
T ss_pred EEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHH-CCC
Confidence 45567899999999987543 3689999999999999999999999999988775 7889999999999999999 999
Q ss_pred EEcCHH
Q 002860 821 KKIDPE 826 (873)
Q Consensus 821 ~~i~~~ 826 (873)
..+++.
T Consensus 130 ~~~g~~ 135 (153)
T PRK10314 130 IPVTEV 135 (153)
T ss_pred EECCCc
Confidence 999873
No 5
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.91 E-value=9.3e-09 Score=90.00 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=65.6
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcE
Q 002860 742 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFK 821 (873)
Q Consensus 742 y~~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~ 821 (873)
+.++++.++++||++.+...+ +.+.|..++|+|+|||+|+|+.|+..+.+.+.. ..+++.+.+.+.+||.+ +||+
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~-~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~~-~GF~ 78 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNE-DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYEK-LGFE 78 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETT-TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHHH-TTEE
T ss_pred EEEEEEECCEEEEEEEEEEcC-CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHHH-CcCC
Confidence 446789999999999996655 499999999999999999999999999888854 45677788899999999 9998
Q ss_pred E
Q 002860 822 K 822 (873)
Q Consensus 822 ~ 822 (873)
+
T Consensus 79 ~ 79 (79)
T PF13508_consen 79 E 79 (79)
T ss_dssp E
T ss_pred C
Confidence 5
No 6
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.89 E-value=1.5e-09 Score=123.13 Aligned_cols=211 Identities=18% Similarity=0.238 Sum_probs=134.6
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCccccccccccchhhccccccccccc-Ccc
Q 002860 480 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEA-GRV 558 (873)
Q Consensus 480 ~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~~~~~ek~v~~n~~~va~-gr~ 558 (873)
.....|.+|..+... ...++..|+.|.++||+.|.-......+.|.+..|.........++......+. ...
T Consensus 81 ~~e~~~nv~~s~~~~-------p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~ 153 (464)
T KOG4323|consen 81 SSELNPNVLTSETVL-------PENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLP 153 (464)
T ss_pred ccccCCccccccccc-------CchhhhhhhhhccCcccccCccCcCcCCcccccccccccccccccccccccccccccc
Confidence 455678888865432 456889999999999999985444445679999888653222111111111110 000
Q ss_pred ccccchhhhhhhhhhhcccccccCCceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCCCCceecC
Q 002860 559 SGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCM 638 (873)
Q Consensus 559 ~gvd~ie~i~~rc~R~~k~~~~~~~~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g~WfC~~ 638 (873)
++.....+... +..+.. |.+|..... + ..+.||+|+.|..|||..|.+|...+.+...|.+.||| .
T Consensus 154 y~~~~l~wD~~--------~~~n~q-c~vC~~g~~---~-~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C-~ 219 (464)
T KOG4323|consen 154 YPEASLDWDSG--------HKVNLQ-CSVCYCGGP---G-AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC-D 219 (464)
T ss_pred CcccccccCcc--------ccccce-eeeeecCCc---C-ccceeeeecccccHHHHHhccCCCCHhhccCccceEee-h
Confidence 11111111111 112233 998876532 2 23489999999999999999987666666778999999 9
Q ss_pred CchhhHhHHHHhhhhccccCchhhh--hhhh--hcccCccccccccCceEEEcc-CCCCC---hhhHHHHHHHHHHhhhc
Q 002860 639 DCSRINSVLQNLLVQEAEKLPEFHL--NAIK--KYAGNSLETVSDIDVRWRLLS-GKAAT---PETRLLLSQAVAIFHDC 710 (873)
Q Consensus 639 ~C~~I~~~LqkLv~~~~e~lp~sll--~~I~--k~~e~g~~~~~~~di~W~lLs-gk~~s---~e~~~~L~~Al~If~Ec 710 (873)
.|..-...+.++-.+|++.++..+. ..+. ++..+-+++.....-.|..|. |...+ .+..+.+..|++-....
T Consensus 220 ~C~~~~~~~~r~t~~~~dv~~lal~~~~~~~~~k~~~~~~ei~~f~e~~~~slp~~e~~tsp~~~~~~~~lsal~~~~~~ 299 (464)
T KOG4323|consen 220 VCNRGPKKVPRLTLRWADVLHLALYNLKPMLKKKYFKSLVEILLFCEESWPSLPFYEPKTSPVTERSSSLLSALSSYKSR 299 (464)
T ss_pred hhccchhhccccccccccccchhhhhhhhhhccCCcccHHHHHHHHhhccccccccCCccccccchhhHHHHhhhccccc
Confidence 9999999999998888888865553 3333 455555555555566787654 44443 35667778888777766
Q ss_pred C
Q 002860 711 F 711 (873)
Q Consensus 711 F 711 (873)
|
T Consensus 300 f 300 (464)
T KOG4323|consen 300 F 300 (464)
T ss_pred c
Confidence 6
No 7
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.83 E-value=1.7e-08 Score=87.70 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=67.2
Q ss_pred eeCCeEEEEEEEEEeCC-----ceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhh---HHHHhHhcc
Q 002860 747 TVNSSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIWTDKF 818 (873)
Q Consensus 747 ~~~~~vVsaA~lri~g~-----~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~---a~~~w~~~f 818 (873)
+.+++|||++.+++... ..+.|..++|+++|||+|+|+.|++.+++.++..|+..+.+..... +..||.+ +
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k-~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK-L 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH-T
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH-c
Confidence 68999999999999886 5999999999999999999999999999999999999988876554 5699998 9
Q ss_pred CcE
Q 002860 819 GFK 821 (873)
Q Consensus 819 GF~ 821 (873)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 8
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.80 E-value=4.4e-09 Score=104.54 Aligned_cols=133 Identities=19% Similarity=0.377 Sum_probs=85.4
Q ss_pred ccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCC--------CCCCCCC--ccccccccccchhhccccccccc
Q 002860 484 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASL--------SSIPQGD--WYCKYCQNMFERKRFLQHDANAV 553 (873)
Q Consensus 484 ~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L--------~~vP~g~--W~C~~C~~~~~~ek~v~~n~~~v 553 (873)
.|..|...-.. ...|.|+.|.||..+||+.||+. +.|.++. .+|..|..-..+++..++.....
T Consensus 1 ~C~~C~~~g~~------~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C 74 (175)
T PF15446_consen 1 TCDTCGYEGDD------RNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMC 74 (175)
T ss_pred CcccccCCCCC------ccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcc
Confidence 37778642111 15789999999999999999973 3455554 68999987777777777766666
Q ss_pred ccCccccccchhhhhhhhhhhcccccccCCceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCC
Q 002860 554 EAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 622 (873)
Q Consensus 554 a~gr~~gvd~ie~i~~rc~R~~k~~~~~~~~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~ 622 (873)
......|....+.......|..+...++.++=......+....+..++.|+.|..|.++||...|++.+
T Consensus 75 ~~C~~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 75 QQCKKPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred cccCCCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 555555554433322333333333333333333333333333344577899999999999999998864
No 9
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.77 E-value=1.1e-08 Score=118.57 Aligned_cols=58 Identities=34% Similarity=0.885 Sum_probs=44.1
Q ss_pred eccccccCCCc--ccccCCCCCCCCcccccCCCCceEeccCCCCccccccCC----CCCCCCCCccccccccc
Q 002860 473 LLEGYKNGLGI--ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS----LSSIPQGDWYCKYCQNM 539 (873)
Q Consensus 473 ll~G~~~~~~i--~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~----L~~vP~g~W~C~~C~~~ 539 (873)
..++++.-..+ +|.-|++.- .| .+++|||+||++||+.||+ .+.+|.|.|+|+.|...
T Consensus 242 ~~D~~~~~~~~~~fCsaCn~~~---~F------~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 242 ERDKNISVEDIEDFCSACNGSG---LF------NDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred hhccccccCCHHHHHHHhCCcc---cc------ccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 34444444444 999999521 11 3569999999999999996 46799999999999876
No 10
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.77 E-value=4e-08 Score=90.79 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=64.4
Q ss_pred cEEEEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCc
Q 002860 741 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 820 (873)
Q Consensus 741 fy~~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF 820 (873)
...+|++.++++||.+.++ .-++|..+.|+|+|||+|+|++|++.+++.++. |++.+.+.+...|.+||.+ +||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHH-TT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHh-CCC
Confidence 3447889999999999986 345599999999999999999999999999988 9999999999999999999 998
No 11
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.76 E-value=2.1e-09 Score=113.57 Aligned_cols=81 Identities=31% Similarity=0.788 Sum_probs=68.9
Q ss_pred CCceEeccCCCCccccccCCC-----CCCCCCCccccccccccchhhcccccccccccCccccccchhhhhhhhhhhccc
Q 002860 503 GGNLLPCDGCPRAFHKECASL-----SSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKN 577 (873)
Q Consensus 503 gG~Ll~Cd~C~~afH~~CL~L-----~~vP~g~W~C~~C~~~~~~ek~v~~n~~~va~gr~~gvd~ie~i~~rc~R~~k~ 577 (873)
.+.+++|..|..++|..|+.+ ..+....|.|..|+.
T Consensus 276 ~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l--------------------------------------- 316 (381)
T KOG1512|consen 276 RNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL--------------------------------------- 316 (381)
T ss_pred hccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh---------------------------------------
Confidence 458999999999999999974 345678899999974
Q ss_pred ccccCCceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCCCCceecCCch
Q 002860 578 LEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 641 (873)
Q Consensus 578 ~~~~~~~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~ 641 (873)
|.||++.. .+..+++||.|++.||..|+. |..+|.|.|+|-..|.
T Consensus 317 -------C~IC~~P~------~E~E~~FCD~CDRG~HT~CVG------L~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 317 -------CRICLGPV------IESEHLFCDVCDRGPHTLCVG------LQDLPRGEWICDMRCR 361 (381)
T ss_pred -------hhccCCcc------cchheeccccccCCCCccccc------cccccCccchhhhHHH
Confidence 99998764 467899999999999999994 6889999999955574
No 12
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.63 E-value=1.6e-08 Score=113.38 Aligned_cols=123 Identities=27% Similarity=0.604 Sum_probs=77.8
Q ss_pred CCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCccccccccccchhhcccccccccccCcccc
Q 002860 481 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSG 560 (873)
Q Consensus 481 ~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~~~~~ek~v~~n~~~va~gr~~g 560 (873)
-...|..|+...+. ..+-+++||+|..+.|+.|+|+.-+|+|.|+|+.|...-+.-.. ........|.+..
T Consensus 192 ~d~~C~~c~~t~~e-------N~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~--C~fCps~dGaFkq 262 (669)
T COG5141 192 FDDICTKCTSTHNE-------NSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRC--CSFCPSSDGAFKQ 262 (669)
T ss_pred hhhhhHhccccccC-------CcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeE--EEeccCCCCceee
Confidence 45678888743221 34679999999999999999999999999999999653211100 0001111222111
Q ss_pred c-------------------------cchhhhhhhhhhhcccccccCCceeeccCCCCCCCCCCCCceeeCC--CCCCcc
Q 002860 561 V-------------------------DSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREF 613 (873)
Q Consensus 561 v-------------------------d~ie~i~~rc~R~~k~~~~~~~~C~iC~~~d~~~sg~~~g~LL~CD--qC~raf 613 (873)
. ++++.+.. + ....+-.+|.+|+. .+|+.|+|. .|-++|
T Consensus 263 T~dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~s-----V-s~srwkl~C~iCk~--------~~GtcIqCs~~nC~~aY 328 (669)
T COG5141 263 TSDGRWGHVICAMFNPELSFGHLLSKDPIDNIAS-----V-SSSRWKLGCLICKE--------FGGTCIQCSYFNCTRAY 328 (669)
T ss_pred ccCCchHhHhHHHhcchhccccccccchhhhhcc-----c-chhhHhheeeEEcc--------cCcceeeecccchhhhh
Confidence 1 11111110 0 01223356999997 478999998 599999
Q ss_pred CcccCCcCCCCcc
Q 002860 614 HVGCLKKHKMADL 626 (873)
Q Consensus 614 Hv~CL~p~~~~~L 626 (873)
|+.|.+..+.-++
T Consensus 329 HVtCArrag~f~~ 341 (669)
T COG5141 329 HVTCARRAGYFDL 341 (669)
T ss_pred hhhhhhhcchhhh
Confidence 9999988765444
No 13
>PTZ00330 acetyltransferase; Provisional
Probab=98.62 E-value=1.7e-07 Score=90.23 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=71.8
Q ss_pred EEEEEeeCCeEEEEEEEEEeC------CceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhH
Q 002860 742 YCAILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 815 (873)
Q Consensus 742 y~~vL~~~~~vVsaA~lri~g------~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~ 815 (873)
+.++...++++||.+.+.... ...++|-.+.++|+|||+|+|+.|+..+++.+...|+..+++.+...|..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 335556789999999886532 23578889999999999999999999999999999999999999999999999
Q ss_pred hccCcEEcCH
Q 002860 816 DKFGFKKIDP 825 (873)
Q Consensus 816 ~~fGF~~i~~ 825 (873)
+ +||.....
T Consensus 133 k-~GF~~~~~ 141 (147)
T PTZ00330 133 K-LGFRACER 141 (147)
T ss_pred H-CCCEEece
Confidence 9 99998764
No 14
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.58 E-value=1.8e-07 Score=89.70 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=68.6
Q ss_pred EEEeeCCeEEEEEEEEEeC-----CceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch---hhHHHHhH
Q 002860 744 AILTVNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWT 815 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g-----~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~---~~a~~~w~ 815 (873)
+|++.++++||.+.+.... ...++|..++|+|+|||+|+|+.|++.+++.++..|+..+.|.+. ..|..||+
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~ 129 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYL 129 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHH
Confidence 4567899999999987632 225789899999999999999999999999999999999988765 47999999
Q ss_pred hccCcEEcC
Q 002860 816 DKFGFKKID 824 (873)
Q Consensus 816 ~~fGF~~i~ 824 (873)
+ +||....
T Consensus 130 ~-~Gf~~~~ 137 (144)
T PRK10146 130 R-EGYEQSH 137 (144)
T ss_pred H-cCCchhh
Confidence 9 9997653
No 15
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.56 E-value=3e-07 Score=89.47 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=68.9
Q ss_pred EEEEEee--CCeEEEEEEEEEeC------CceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHH
Q 002860 742 YCAILTV--NSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESI 813 (873)
Q Consensus 742 y~~vL~~--~~~vVsaA~lri~g------~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~ 813 (873)
|.++++. ++++||.+.+.+.. ..++.|..+++.++|||+|+|+.|++.+++.+..+|++++++........|
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 3344454 68999999885432 356677779999999999999999999999999999999999988888899
Q ss_pred hHhccCcEEcC
Q 002860 814 WTDKFGFKKID 824 (873)
Q Consensus 814 w~~~fGF~~i~ 824 (873)
|.+ +||...+
T Consensus 134 y~k-~GF~~~g 143 (150)
T PLN02706 134 YEK-CGYVRKE 143 (150)
T ss_pred HHH-CcCEEeh
Confidence 998 9999764
No 16
>PLN02825 amino-acid N-acetyltransferase
Probab=98.55 E-value=2.8e-07 Score=107.97 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=78.0
Q ss_pred EEEeeCCeEEEEEEEEEeC-CceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEE
Q 002860 744 AILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 822 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g-~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~ 822 (873)
+|++.|+++||+|.+..+. .+.+||-.+||+|+|||+|+|++||+.+|+.++..|+++|++.+ ..+..||.+ +||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~k-~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFVR-RGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHHH-CCCEE
Confidence 4678999999999988765 46899999999999999999999999999999999999999876 467777777 99999
Q ss_pred cCHHHHHHHHhh
Q 002860 823 IDPELLSIYRKR 834 (873)
Q Consensus 823 i~~~~~~~~~~~ 834 (873)
.+.+++..-++.
T Consensus 488 ~~~~~lp~~~~~ 499 (515)
T PLN02825 488 CSIESLPEARRK 499 (515)
T ss_pred eChhhCCHHHHh
Confidence 999877766665
No 17
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.54 E-value=2.9e-07 Score=92.90 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=70.9
Q ss_pred EEEe-eCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEE
Q 002860 744 AILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 822 (873)
Q Consensus 744 ~vL~-~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~ 822 (873)
++++ .++++||.+.+.+...+.++|..++++++|||+|+|+.|++.+++.++..|+.++++... +..||.+ +||..
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~k-~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFAR-HGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHHH-CCCEE
Confidence 4566 889999999988877889999999999999999999999999999999999999987654 4789999 99999
Q ss_pred cCH
Q 002860 823 IDP 825 (873)
Q Consensus 823 i~~ 825 (873)
++.
T Consensus 125 ~~~ 127 (169)
T PRK07922 125 IDG 127 (169)
T ss_pred Ccc
Confidence 875
No 18
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.54 E-value=2.2e-07 Score=102.20 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=67.6
Q ss_pred EEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEcC
Q 002860 745 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 824 (873)
Q Consensus 745 vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~i~ 824 (873)
+.+.++++||+|++.. .+|..+||+|+|||+|+|+.||+.+++.++..|+.+++|.+...+..||.+ +||..++
T Consensus 10 v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek-~GF~~~~ 83 (297)
T cd02169 10 IFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRG-LGFKELA 83 (297)
T ss_pred EEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHH-CCCEEec
Confidence 4456799999998842 469999999999999999999999999999999999999999999999997 9999998
No 19
>PRK07757 acetyltransferase; Provisional
Probab=98.52 E-value=3.3e-07 Score=89.38 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=71.9
Q ss_pred EEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEc
Q 002860 744 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 823 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~i 823 (873)
+++..++++||.+.+.+.+.+.++|-.++|.|+|||+|+|+.|+..+++.+...|+.++++-.. +..||.+ +||+.+
T Consensus 44 ~i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~--~~~~Y~k-~GF~~~ 120 (152)
T PRK07757 44 YVAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY--QPEFFEK-LGFREV 120 (152)
T ss_pred EEEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHH-CCCEEc
Confidence 3456789999999999988889999999999999999999999999999999999999876443 4689998 999999
Q ss_pred CHHHH
Q 002860 824 DPELL 828 (873)
Q Consensus 824 ~~~~~ 828 (873)
+..++
T Consensus 121 ~~~~~ 125 (152)
T PRK07757 121 DKEAL 125 (152)
T ss_pred ccccC
Confidence 87443
No 20
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.49 E-value=7.4e-07 Score=83.98 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=79.4
Q ss_pred HHHHHHHhhhcCCCcccCCcCCCcchhhhhcccCCCceecCcEEEEEeeCCeEEEEEEEEEe-----CC--ceeeeeeee
Q 002860 700 LSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVF-----GQ--EVAELPLVA 772 (873)
Q Consensus 700 L~~Al~If~EcF~Piid~~TgrDLIp~mvy~~~~~~~~f~gfy~~vL~~~~~vVsaA~lri~-----g~--~~AEip~vA 772 (873)
+.+..+++.++|.+-..+. ..+.|..+. +..-++++.+.+++|||.+.+..+ |. .++-|--||
T Consensus 10 ~~~i~~l~~~~F~~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~ 79 (127)
T PF13527_consen 10 FEQIIELFNEAFGDSESPP------EIWEYFRNL----YGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVA 79 (127)
T ss_dssp HHHHHHHHHHHTTT-CHHH------HHHHHHHHH----HHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCch------hhhhhhhcc----cCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 4566777888885443321 123332221 111245777889999998877554 33 579999999
Q ss_pred eccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEc
Q 002860 773 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 823 (873)
Q Consensus 773 t~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~i 823 (873)
|+|+|||+|+++.||+.+++.++..|+.-+++.+ ....+|.+ |||+.+
T Consensus 80 v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~~-~G~~~~ 127 (127)
T PF13527_consen 80 VDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYRR-FGFEYA 127 (127)
T ss_dssp E-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHHH-TTEEEE
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhhc-CCCEEC
Confidence 9999999999999999999999999999998877 34789988 999864
No 21
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.49 E-value=9.1e-08 Score=118.09 Aligned_cols=129 Identities=24% Similarity=0.524 Sum_probs=82.3
Q ss_pred cCCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCccccccccccchhhcccccccccccC--
Q 002860 479 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAG-- 556 (873)
Q Consensus 479 ~~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~~~~~ek~v~~n~~~va~g-- 556 (873)
...+.+|.+|.....- ....+++||+|..++|+.|++..-+|+|.|+|..|....++. +.........|
T Consensus 216 ~~~D~~C~iC~~~~~~-------n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~--v~c~~cp~~~gAF 286 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQ-------NSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRP--VRCLLCPSKGGAF 286 (1051)
T ss_pred cCCCccceeecccccC-------CCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcc--cceEeccCCCCcc
Confidence 3567899999953221 346899999999999999999999999999999998654332 11111222222
Q ss_pred ------ccccccchhhhhh------------hhhhhcccccccCCceeeccCCCCCCCCCCCCceeeCC--CCCCccCcc
Q 002860 557 ------RVSGVDSVEQITK------------RCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVG 616 (873)
Q Consensus 557 ------r~~gvd~ie~i~~------------rc~R~~k~~~~~~~~C~iC~~~d~~~sg~~~g~LL~CD--qC~rafHv~ 616 (873)
+..++-..-.+.. ..++... .......|++|+.. +.|..|+|. .|-.+||++
T Consensus 287 kqt~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i~-~aRwkL~cy~cK~~-------~~gaciqcs~~~c~~a~hvt 358 (1051)
T KOG0955|consen 287 KQTDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENIP-PARWKLTCYICKQK-------GLGACIQCSKANCYTAFHVT 358 (1051)
T ss_pred eeccCCceeeeehhhcccccccccchhhccccchhcCc-HhhhhceeeeeccC-------CCCcceecchhhhhhhhhhh
Confidence 2222211111110 0111111 11234569999974 358899998 699999999
Q ss_pred cCCcCCCC
Q 002860 617 CLKKHKMA 624 (873)
Q Consensus 617 CL~p~~~~ 624 (873)
|.+..++.
T Consensus 359 ca~~agl~ 366 (1051)
T KOG0955|consen 359 CARRAGLY 366 (1051)
T ss_pred hHhhcCce
Confidence 99887643
No 22
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.47 E-value=7.3e-08 Score=112.61 Aligned_cols=133 Identities=23% Similarity=0.539 Sum_probs=84.9
Q ss_pred ccccCCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCccccccccccchhhcccccccc---
Q 002860 476 GYKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANA--- 552 (873)
Q Consensus 476 G~~~~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~~~~~ek~v~~n~~~--- 552 (873)
|+...+...|.+|....+. ++.+|++||.|....|+.|+|+.++|+|.|.|..|.-..++.-.+-++...
T Consensus 265 gie~dedviCDvCrspD~e-------~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK 337 (893)
T KOG0954|consen 265 GIEYDEDVICDVCRSPDSE-------EANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMK 337 (893)
T ss_pred eeeccccceeceecCCCcc-------ccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCccc
Confidence 4556788899999976543 577999999999999999999999999999999997653322111111111
Q ss_pred -cccC-cccccc---chhhhhhhhhhhcc--------cccccCCceeeccCCCCCCCCCCCCceeeCC--CCCCccCccc
Q 002860 553 -VEAG-RVSGVD---SVEQITKRCIRIVK--------NLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGC 617 (873)
Q Consensus 553 -va~g-r~~gvd---~ie~i~~rc~R~~k--------~~~~~~~~C~iC~~~d~~~sg~~~g~LL~CD--qC~rafHv~C 617 (873)
...| .+.++. +++++..-|..... ....+...|.+|+. .-|..|+|. .|..+||+.|
T Consensus 338 ~~~sgT~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~--------k~GACIqCs~k~C~t~fHv~C 409 (893)
T KOG0954|consen 338 PTKSGTKWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKV--------KSGACIQCSNKTCRTAFHVTC 409 (893)
T ss_pred ccCCCCeeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcc--------cCcceEEecccchhhhccchh
Confidence 0011 111211 11121111111000 01123345999986 357889997 8999999999
Q ss_pred CCcCCC
Q 002860 618 LKKHKM 623 (873)
Q Consensus 618 L~p~~~ 623 (873)
...+|+
T Consensus 410 A~~aG~ 415 (893)
T KOG0954|consen 410 AFEAGL 415 (893)
T ss_pred hhhcCC
Confidence 998875
No 23
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.46 E-value=1e-06 Score=82.18 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=68.2
Q ss_pred EEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEec---chhhHHHHhHhccCc
Q 002860 744 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWTDKFGF 820 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlp---A~~~a~~~w~~~fGF 820 (873)
++++.++++||.+.+.... +...+-.++|.++|||||+|+.|++.+++.+...|...+++. ....+..+|++ +||
T Consensus 34 ~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~-~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKK-LGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHH-cCC
Confidence 4556789999999987644 456788899999999999999999999999999999999884 45568899998 999
Q ss_pred EEcCH
Q 002860 821 KKIDP 825 (873)
Q Consensus 821 ~~i~~ 825 (873)
+.++.
T Consensus 112 ~~~~~ 116 (131)
T TIGR01575 112 NEIAI 116 (131)
T ss_pred Ccccc
Confidence 98765
No 24
>PRK03624 putative acetyltransferase; Provisional
Probab=98.45 E-value=5.5e-07 Score=84.88 Aligned_cols=82 Identities=20% Similarity=0.157 Sum_probs=68.2
Q ss_pred EEEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch---hhHHHHhHhccC
Q 002860 743 CAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKFG 819 (873)
Q Consensus 743 ~~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~---~~a~~~w~~~fG 819 (873)
.+++..++++||.+.+...+ +.+.+..++++|+|||+|+|+.|++.+++.+...|++++.+.+. ..+..+|.+ +|
T Consensus 47 ~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k-~G 124 (140)
T PRK03624 47 FLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEA-LG 124 (140)
T ss_pred EEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHH-cC
Confidence 35667889999998876533 45678889999999999999999999999999999998877654 458899988 99
Q ss_pred cEEcCHH
Q 002860 820 FKKIDPE 826 (873)
Q Consensus 820 F~~i~~~ 826 (873)
|+..+..
T Consensus 125 F~~~~~~ 131 (140)
T PRK03624 125 YEEQDRI 131 (140)
T ss_pred CccccEE
Confidence 9976643
No 25
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.41 E-value=9.9e-07 Score=101.67 Aligned_cols=84 Identities=15% Similarity=0.261 Sum_probs=73.1
Q ss_pred EEeeCCeEEEEEEEEEeC-CceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEc
Q 002860 745 ILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 823 (873)
Q Consensus 745 vL~~~~~vVsaA~lri~g-~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~i 823 (873)
+++.++++||++.+..+. ...++|-.++|+|+|||+|+|++||+.+++.+...|++.+++.+. .+..||.+ +||..+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~k-~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFRE-RGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHHH-CCCEEC
Confidence 557899999999998874 468999999999999999999999999999999999999877653 56789987 999999
Q ss_pred CHHHHHH
Q 002860 824 DPELLSI 830 (873)
Q Consensus 824 ~~~~~~~ 830 (873)
+..++..
T Consensus 404 g~~~l~~ 410 (429)
T TIGR01890 404 SVDELPE 410 (429)
T ss_pred ChhhCCH
Confidence 8865443
No 26
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.40 E-value=6.8e-07 Score=87.50 Aligned_cols=84 Identities=24% Similarity=0.235 Sum_probs=71.6
Q ss_pred EEEeeCCeEEEEEEEEEeCCceee--eeeeeeccCCcCCChhHHHHHHHHHHhhhcC-ceEEEecchhhHHHHhHhccCc
Q 002860 744 AILTVNSSVVSAGILRVFGQEVAE--LPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAAEEAESIWTDKFGF 820 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g~~~AE--ip~vAt~~~~r~qG~gr~L~~~iE~~l~~lg-V~~lvlpA~~~a~~~w~~~fGF 820 (873)
++...||++|++|+|-.-+....+ |.+|+|.+++||+|+|+.||....+.+.... =+.+.|.|+..++.||.. |||
T Consensus 53 ~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa~-~GF 131 (155)
T COG2153 53 LGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYAS-FGF 131 (155)
T ss_pred EEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHHH-hCc
Confidence 333449999999999887876666 9999999999999999999987777665554 667999999999999999 999
Q ss_pred EEcCHHHH
Q 002860 821 KKIDPELL 828 (873)
Q Consensus 821 ~~i~~~~~ 828 (873)
.+.+++-+
T Consensus 132 v~~~e~yl 139 (155)
T COG2153 132 VRVGEEYL 139 (155)
T ss_pred EEcCchhh
Confidence 99998643
No 27
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.40 E-value=1.3e-07 Score=112.93 Aligned_cols=155 Identities=26% Similarity=0.495 Sum_probs=99.4
Q ss_pred CCCCccccccCC--CCCCCCCCccccccccccchhhcccccccccccCccccccchhhhhhhhhhhcccccccCCceeec
Q 002860 511 GCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLC 588 (873)
Q Consensus 511 ~C~~afH~~CL~--L~~vP~g~W~C~~C~~~~~~ek~v~~n~~~va~gr~~gvd~ie~i~~rc~R~~k~~~~~~~~C~iC 588 (873)
.|++.||..|++ +..-|+++|.|+.|....-. +...+.. -...+..+|.+|
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~------------------~~~~~~~---------~~~~~~e~c~ic 53 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQ------------------VEAKDDD---------WDDAEQEACRIC 53 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccc------------------cccccCC---------cchhhhhhhhhh
Confidence 489999999996 56667899999999753110 0000000 012345679999
Q ss_pred cCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCCCCceecCCchhh--HhHHHHhhhhccccCc---hhhh
Q 002860 589 RGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRI--NSVLQNLLVQEAEKLP---EFHL 663 (873)
Q Consensus 589 ~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~~I--~~~LqkLv~~~~e~lp---~sll 663 (873)
+. .+++|.||.|+.+||..|+.+ ++...|.+.|.| +.|..- ..+.++++.|...+.+ ..-.
T Consensus 54 ~~---------~g~~l~c~tC~~s~h~~cl~~----pl~~~p~~~~~c-~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~ 119 (696)
T KOG0383|consen 54 AD---------GGELLWCDTCPASFHASCLGP----PLTPQPNGEFIC-PRCFCPKNAGKIEKILGWRWKPTPKPREGNQ 119 (696)
T ss_pred cC---------CCcEEEeccccHHHHHHccCC----CCCcCCccceee-eeeccCCCcccccccceeEecCCCCccccCc
Confidence 94 678999999999999999986 677888888999 588422 1244556655433333 2222
Q ss_pred hhhhhcccCccccccccCceEEEccCCCCChhhHHHHHHHHHHh
Q 002860 664 NAIKKYAGNSLETVSDIDVRWRLLSGKAATPETRLLLSQAVAIF 707 (873)
Q Consensus 664 ~~I~k~~e~g~~~~~~~di~W~lLsgk~~s~e~~~~L~~Al~If 707 (873)
+.+.-+...+ .......++|+.+++.++.|.....+......+
T Consensus 120 ~~~~~~~~~~-~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~ 162 (696)
T KOG0383|consen 120 GVISPRRSNG-IVEREFFVKWQGLSYWHCSWKSELLLQNPLNTL 162 (696)
T ss_pred CccCCccccc-chhhhcccccccCCccchhHHHHHHhhhhcccc
Confidence 2222111111 224456789999999999887766665444433
No 28
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.37 E-value=1.1e-06 Score=98.29 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=72.0
Q ss_pred cEEEEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCc
Q 002860 741 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 820 (873)
Q Consensus 741 fy~~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF 820 (873)
-|+++++.++++||+|++ .| + .|..+||+++|||+|+|+.||..|++.+...|+..+++.+.+....||.+ +||
T Consensus 31 d~~vv~~~~~~lVg~g~l--~g-~--~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~k-lGF 104 (332)
T TIGR00124 31 EIFIAVYEDEEIIGCGGI--AG-N--VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEY-CGF 104 (332)
T ss_pred CEEEEEEECCEEEEEEEE--ec-C--EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHH-cCC
Confidence 566778899999999997 34 2 48899999999999999999999999999999999999999988999887 999
Q ss_pred EEcCHH
Q 002860 821 KKIDPE 826 (873)
Q Consensus 821 ~~i~~~ 826 (873)
..+...
T Consensus 105 ~~i~~~ 110 (332)
T TIGR00124 105 KTLAEA 110 (332)
T ss_pred EEeeee
Confidence 998863
No 29
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.36 E-value=1.6e-06 Score=88.70 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=69.9
Q ss_pred EEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecc---hhhHHHHhHhccCcE
Q 002860 745 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWTDKFGFK 821 (873)
Q Consensus 745 vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA---~~~a~~~w~~~fGF~ 821 (873)
++..++++||.+.+.......++|-.+++.|+|||+|+|+.|++.+++.+..+|+.+|.+.. -..|..||.+ +||+
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~k-lGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIR-SGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-cCCc
Confidence 44568899999999877666789999999999999999999999999999999999998874 3458999998 9998
Q ss_pred EcCH
Q 002860 822 KIDP 825 (873)
Q Consensus 822 ~i~~ 825 (873)
....
T Consensus 182 ~~~~ 185 (191)
T TIGR02382 182 IEST 185 (191)
T ss_pred cccc
Confidence 7654
No 30
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.35 E-value=1.8e-06 Score=88.33 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=70.6
Q ss_pred cEEEEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch---hhHHHHhHhc
Q 002860 741 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDK 817 (873)
Q Consensus 741 fy~~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~---~~a~~~w~~~ 817 (873)
.+.++...++++||.+.+...+...++|-.+++.|+|||||+|+.|+..+++.+...|++++++... ..+..+|++
T Consensus 102 ~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek- 180 (194)
T PRK10975 102 QCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIR- 180 (194)
T ss_pred cEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHH-
Confidence 3433444678999999998776667899999999999999999999999999999999999987643 468999988
Q ss_pred cCcEEcCH
Q 002860 818 FGFKKIDP 825 (873)
Q Consensus 818 fGF~~i~~ 825 (873)
+||...+.
T Consensus 181 ~Gf~~~~~ 188 (194)
T PRK10975 181 SGANIEST 188 (194)
T ss_pred CCCeEeEE
Confidence 99998653
No 31
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.33 E-value=1.7e-06 Score=99.96 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=72.8
Q ss_pred EEEeeCCeEEEEEEEEEeC-CceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEE
Q 002860 744 AILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 822 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g-~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~ 822 (873)
++++.++++||++.+..+. ...++|..++|+|+|||+|+|++||+.+++.++..|++.+++.+ ..|..||.+ +||..
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~k-~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFLE-RGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHHH-CcCEE
Confidence 4567899999999887654 36899999999999999999999999999999999999998765 468899988 99999
Q ss_pred cCHHHHH
Q 002860 823 IDPELLS 829 (873)
Q Consensus 823 i~~~~~~ 829 (873)
++..++.
T Consensus 415 ~g~~~~~ 421 (441)
T PRK05279 415 VDVDDLP 421 (441)
T ss_pred CChhhCc
Confidence 9885543
No 32
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.32 E-value=2.7e-06 Score=91.92 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=69.9
Q ss_pred EEEEEeeCCeEEEEEEEEEe-CCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhh---HHHHhHhc
Q 002860 742 YCAILTVNSSVVSAGILRVF-GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIWTDK 817 (873)
Q Consensus 742 y~~vL~~~~~vVsaA~lri~-g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~---a~~~w~~~ 817 (873)
+.++++.++++||.+.+.+. +...+||-.++|+|+|||+|+|+.||+.+++.++..|++.+++.+... +..+|.+
T Consensus 159 ~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k- 237 (266)
T TIGR03827 159 VYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFAR- 237 (266)
T ss_pred EEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHH-
Confidence 33566789999999998553 346799999999999999999999999999999999999999887654 4567877
Q ss_pred cCcEEcCH
Q 002860 818 FGFKKIDP 825 (873)
Q Consensus 818 fGF~~i~~ 825 (873)
+||...+.
T Consensus 238 ~GF~~~G~ 245 (266)
T TIGR03827 238 LGYAYGGT 245 (266)
T ss_pred cCCccccE
Confidence 99997665
No 33
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.32 E-value=3.6e-06 Score=81.65 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=70.5
Q ss_pred CcEEEEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEec---chhhHHHHhHh
Q 002860 740 GMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWTD 816 (873)
Q Consensus 740 gfy~~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlp---A~~~a~~~w~~ 816 (873)
+++...++.++++||.+.++.... .+++-.+++.++|||+|+|+.|+..+++.+...|+..+++. .-..+..+|.+
T Consensus 39 ~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k 117 (146)
T PRK09491 39 RYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYES 117 (146)
T ss_pred CceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHH
Confidence 455556678899999999876554 46678889999999999999999999999999999988875 34568899999
Q ss_pred ccCcEEcCH
Q 002860 817 KFGFKKIDP 825 (873)
Q Consensus 817 ~fGF~~i~~ 825 (873)
+||+..+.
T Consensus 118 -~Gf~~~~~ 125 (146)
T PRK09491 118 -LGFNEVTI 125 (146)
T ss_pred -cCCEEeee
Confidence 99998765
No 34
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.29 E-value=3.2e-07 Score=107.61 Aligned_cols=50 Identities=42% Similarity=0.985 Sum_probs=44.6
Q ss_pred cCCceeeccCCCCCCCCCCCCceeeCCCCCCc-cCcccCCcCCCCcccCCCCCCceecCCch
Q 002860 581 ELSGCLLCRGCDFSKSGFGPRTILLCDQCERE-FHVGCLKKHKMADLRELPKGKWFCCMDCS 641 (873)
Q Consensus 581 ~~~~C~iC~~~d~~~sg~~~g~LL~CDqC~ra-fHv~CL~p~~~~~L~e~P~g~WfC~~~C~ 641 (873)
+...|.||..+| .+..||+||.|... ||++||+| +|.++|-+.||| .+|.
T Consensus 214 E~~~C~IC~~~D------pEdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~ 264 (1134)
T KOG0825|consen 214 EEVKCDICTVHD------PEDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCS 264 (1134)
T ss_pred ccccceeeccCC------hHHhheeecccccceeeccccCc----ccccccccceec-Ccch
Confidence 445699999887 57789999999998 99999997 788999999999 9997
No 35
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.27 E-value=2.1e-06 Score=103.32 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=73.3
Q ss_pred EEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEc
Q 002860 744 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 823 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~i 823 (873)
++++.++++||.+.+.....+.++|..++|+|+|||||+|+.||+.+++.++..|+..+++.+. +..||++ +||...
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYek-~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFMK-QGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHHH-CCCEEC
Confidence 4668899999999998877778999999999999999999999999999999999999987653 5789998 999999
Q ss_pred CHHHH
Q 002860 824 DPELL 828 (873)
Q Consensus 824 ~~~~~ 828 (873)
+...+
T Consensus 583 ~~~~~ 587 (614)
T PRK12308 583 SKSLL 587 (614)
T ss_pred CcccC
Confidence 88654
No 36
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.26 E-value=4.5e-07 Score=105.46 Aligned_cols=49 Identities=39% Similarity=0.999 Sum_probs=41.3
Q ss_pred ceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCCCCceecCCch
Q 002860 584 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 641 (873)
Q Consensus 584 ~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~ 641 (873)
+|..|++.+ .| ..+|+||.|++.||..||.|+- ..+.+|.|.||| +.|.
T Consensus 255 fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePPl--~~eniP~g~W~C-~ec~ 303 (613)
T KOG4299|consen 255 FCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPPL--EPENIPPGSWFC-PECK 303 (613)
T ss_pred HHHHhCCcc----cc--ccceeecCCchHHHHhhcCCCC--CcccCCCCcccc-CCCe
Confidence 799999764 23 6789999999999999999842 257899999999 8887
No 37
>PRK13688 hypothetical protein; Provisional
Probab=98.18 E-value=6.2e-06 Score=82.72 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=59.8
Q ss_pred EEeeCCeEEEEEEEEEe----------CCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHh
Q 002860 745 ILTVNSSVVSAGILRVF----------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIW 814 (873)
Q Consensus 745 vL~~~~~vVsaA~lri~----------g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w 814 (873)
++..++++||.+.+... ..+.++|-.++|+|+|||||+|++|++.+++. ++. +.+.+...|..||
T Consensus 49 ~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~~----~~~-~~~~~~~~a~~FY 123 (156)
T PRK13688 49 GIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKSF----QLP-IKTIARNKSKDFW 123 (156)
T ss_pred EEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHh----CCe-EEEEeccchHHHH
Confidence 45678999998887442 24678999999999999999999999876553 333 3445666789999
Q ss_pred HhccCcEEcCHH
Q 002860 815 TDKFGFKKIDPE 826 (873)
Q Consensus 815 ~~~fGF~~i~~~ 826 (873)
.+ +||..++..
T Consensus 124 ~k-~GF~~~~~~ 134 (156)
T PRK13688 124 LK-LGFTPVEYK 134 (156)
T ss_pred Hh-CCCEEeEEe
Confidence 99 999988765
No 38
>PHA00673 acetyltransferase domain containing protein
Probab=98.15 E-value=1.1e-05 Score=80.68 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=71.5
Q ss_pred EEEeeCCeEEEEEEEEEeC------CceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhh--HHHHhH
Q 002860 744 AILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE--AESIWT 815 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g------~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~--a~~~w~ 815 (873)
+|.+.+|+|||++.+.+.. ...+.|--+-|++++||||+|++||+.+++.++..|+..|.+.|.++ .+.||.
T Consensus 58 lVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~fy~ 137 (154)
T PHA00673 58 LGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQLLP 137 (154)
T ss_pred EEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHHHH
Confidence 5667799999999988754 35678999999999999999999999999999999999999999875 689999
Q ss_pred hccCcEEcCH
Q 002860 816 DKFGFKKIDP 825 (873)
Q Consensus 816 ~~fGF~~i~~ 825 (873)
+ .|++....
T Consensus 138 ~-~g~~~~~~ 146 (154)
T PHA00673 138 A-AGYRETNR 146 (154)
T ss_pred h-CCchhhch
Confidence 9 99986543
No 39
>PRK09831 putative acyltransferase; Provisional
Probab=98.14 E-value=6e-06 Score=80.65 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=61.4
Q ss_pred EEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEc
Q 002860 744 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 823 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~i 823 (873)
+++..++++||.+.+.. ..+..+.|+|+|||+|+|++|+..+++.+.. +.+.+...|..||.+ +||..+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~k-~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFER-YGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHHH-CCCEEe
Confidence 45678999999888742 4577899999999999999999999998766 455566789999999 999999
Q ss_pred CHHH
Q 002860 824 DPEL 827 (873)
Q Consensus 824 ~~~~ 827 (873)
+...
T Consensus 125 g~~~ 128 (147)
T PRK09831 125 KQQR 128 (147)
T ss_pred eccc
Confidence 8855
No 40
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=98.14 E-value=2.5e-06 Score=89.92 Aligned_cols=49 Identities=39% Similarity=1.032 Sum_probs=41.9
Q ss_pred cCCCcccccCCCCCCCCcccccCCCCceEeccC--CCC-ccccccCCCCCCCCCCcccccccc
Q 002860 479 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CPR-AFHKECASLSSIPQGDWYCKYCQN 538 (873)
Q Consensus 479 ~~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~--C~~-afH~~CL~L~~vP~g~W~C~~C~~ 538 (873)
.++.-+|.|=+. ..|+|+-||+ |.+ .||+.|+||...|.|.|||+.|+.
T Consensus 218 e~e~lYCfCqqv-----------SyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 218 EGEELYCFCQQV-----------SYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred cCceeEEEeccc-----------ccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 456678865442 4799999998 988 999999999999999999999984
No 41
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.14 E-value=1.1e-05 Score=78.65 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=67.6
Q ss_pred cEEEEEeeCCeEEEEEEEEEeC----CceeeeeeeeeccCCcCCChhHHHHHHHHHHhhh-cCceEEEecc---hhhHHH
Q 002860 741 MYCAILTVNSSVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPA---AEEAES 812 (873)
Q Consensus 741 fy~~vL~~~~~vVsaA~lri~g----~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~-lgV~~lvlpA---~~~a~~ 812 (873)
.+.+++..++++||.+.+.... ...+++. +.+.|+|||+|+|+.|++.+...+.. +|.+++.+.. -..|..
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 3446667889999999987542 2355654 89999999999999999999999888 6888776654 457889
Q ss_pred HhHhccCcEEcCHHH
Q 002860 813 IWTDKFGFKKIDPEL 827 (873)
Q Consensus 813 ~w~~~fGF~~i~~~~ 827 (873)
+|++ +||...+...
T Consensus 130 ~y~k-~GF~~~g~~~ 143 (162)
T PRK10140 130 VYKK-YGFEIEGTGK 143 (162)
T ss_pred HHHH-CCCEEEeecc
Confidence 9998 9999877633
No 42
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.13 E-value=5.9e-06 Score=80.13 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=74.6
Q ss_pred cEEEEEee--CCeEEEEEEEEEe-----C-CceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHH
Q 002860 741 MYCAILTV--NSSVVSAGILRVF-----G-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAES 812 (873)
Q Consensus 741 fy~~vL~~--~~~vVsaA~lri~-----g-~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~ 812 (873)
+|.+|++. .++|||+|+|.|. + .--.+|.=|+++++||||++|+.|++.|-.++.++|+-.+.|.-.++..+
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 78788885 4899999999873 3 23467888999999999999999999999999999999999999999999
Q ss_pred HhHhccCcEEcCH
Q 002860 813 IWTDKFGFKKIDP 825 (873)
Q Consensus 813 ~w~~~fGF~~i~~ 825 (873)
||.+ |||+..+.
T Consensus 133 FYeK-cG~s~~~~ 144 (150)
T KOG3396|consen 133 FYEK-CGYSNAGN 144 (150)
T ss_pred HHHH-cCccccch
Confidence 9999 99997763
No 43
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.05 E-value=2.7e-05 Score=84.30 Aligned_cols=80 Identities=8% Similarity=0.008 Sum_probs=64.5
Q ss_pred EEEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch-hhHHHHhHhccCcE
Q 002860 743 CAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-EEAESIWTDKFGFK 821 (873)
Q Consensus 743 ~~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~-~~a~~~w~~~fGF~ 821 (873)
.++...++++||.+.+.......+++-.++|+|+|||+|+|++||+.+++.+. +.-.+++... ..|+.||.+ +||.
T Consensus 48 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~~-~Gf~ 124 (292)
T TIGR03448 48 HLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALASR-LGLV 124 (292)
T ss_pred EEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHHH-CCCE
Confidence 35667889999999988875555788899999999999999999999999865 2234555543 568999998 9998
Q ss_pred EcCH
Q 002860 822 KIDP 825 (873)
Q Consensus 822 ~i~~ 825 (873)
.+..
T Consensus 125 ~~~~ 128 (292)
T TIGR03448 125 PTRE 128 (292)
T ss_pred EccE
Confidence 7765
No 44
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=97.97 E-value=3.6e-05 Score=76.93 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=62.1
Q ss_pred EEEEEEEEEeCC---ceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch---hhHHHHhHhccCcEEcCH
Q 002860 752 VVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKFGFKKIDP 825 (873)
Q Consensus 752 vVsaA~lri~g~---~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~---~~a~~~w~~~fGF~~i~~ 825 (873)
.|||........ .-++|-.+||+++|||||+|++|+..+.+.++..|+..++|.+. ..|..+|++ |||.+...
T Consensus 68 ~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~s-LGF~r~~r 146 (165)
T KOG3139|consen 68 TVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYES-LGFKRDKR 146 (165)
T ss_pred eEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHh-cCceEecc
Confidence 477766554332 35899999999999999999999999999999999999999875 468999999 99998654
No 45
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=97.95 E-value=2.8e-05 Score=84.14 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=66.8
Q ss_pred CcEEEEEeeCCeEEEEEEEEEeCC--ceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch---hhHHHHh
Q 002860 740 GMYCAILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIW 814 (873)
Q Consensus 740 gfy~~vL~~~~~vVsaA~lri~g~--~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~---~~a~~~w 814 (873)
++|.++...++++||.+.+.+... +.++|-.++|+|+|||+|+|+.|+..+++.+...|+..+.+... ..|..||
T Consensus 199 ~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y 278 (292)
T TIGR03448 199 GLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTY 278 (292)
T ss_pred ceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHH
Confidence 455332212689999876665442 46788889999999999999999999999999999988777653 4689999
Q ss_pred HhccCcEEcCH
Q 002860 815 TDKFGFKKIDP 825 (873)
Q Consensus 815 ~~~fGF~~i~~ 825 (873)
.+ +||+....
T Consensus 279 ~k-~GF~~~~~ 288 (292)
T TIGR03448 279 EK-LGFTVAEV 288 (292)
T ss_pred HH-cCCEEccc
Confidence 98 99987653
No 46
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.93 E-value=1.7e-06 Score=70.29 Aligned_cols=49 Identities=31% Similarity=0.911 Sum_probs=37.2
Q ss_pred ceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCCCCceecCCch
Q 002860 584 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 641 (873)
Q Consensus 584 ~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~ 641 (873)
+|.+|+..+ ..+.+|.|+.|.++||..|+++... ....+.+.|+| +.|.
T Consensus 1 ~C~vC~~~~------~~~~~i~C~~C~~~~H~~C~~~~~~--~~~~~~~~w~C-~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSD------DDGDMIQCDSCNRWYHQECVGPPEK--AEEIPSGDWYC-PNCR 49 (51)
T ss_dssp EBTTTTSSC------TTSSEEEBSTTSCEEETTTSTSSHS--HHSHHSSSBSS-HHHH
T ss_pred eCcCCCCcC------CCCCeEEcCCCChhhCcccCCCChh--hccCCCCcEEC-cCCc
Confidence 378898743 6788999999999999999997532 12334459999 7775
No 47
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.93 E-value=4.5e-06 Score=97.49 Aligned_cols=82 Identities=32% Similarity=0.917 Sum_probs=65.9
Q ss_pred CCCceEeccCCCCccccccCCC--CCC-CCCCccccccccccchhhcccccccccccCccccccchhhhhhhhhhhcccc
Q 002860 502 DGGNLLPCDGCPRAFHKECASL--SSI-PQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNL 578 (873)
Q Consensus 502 dgG~Ll~Cd~C~~afH~~CL~L--~~v-P~g~W~C~~C~~~~~~ek~v~~n~~~va~gr~~gvd~ie~i~~rc~R~~k~~ 578 (873)
..|.|+-|..|...||.+|+.+ ... -.+-|.|+.|+.
T Consensus 31 ~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv---------------------------------------- 70 (694)
T KOG4443|consen 31 RAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV---------------------------------------- 70 (694)
T ss_pred ccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee----------------------------------------
Confidence 3567999999999999999962 111 233499999984
Q ss_pred cccCCceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCCCCceecCCc
Q 002860 579 EAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDC 640 (873)
Q Consensus 579 ~~~~~~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g~WfC~~~C 640 (873)
|..|+... ++..++.|+.|+-.||.+|+.| +++.+|.+.|+| +-|
T Consensus 71 ------Ce~c~~~g------D~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~c-kk~ 115 (694)
T KOG4443|consen 71 ------CEACGTTG------DPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLC-KKC 115 (694)
T ss_pred ------eeeccccC------CcccccccccccccccccccCC----ccccccCccccc-HHH
Confidence 77787432 6788999999999999999987 678899999999 443
No 48
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=97.93 E-value=3.8e-05 Score=76.45 Aligned_cols=82 Identities=12% Similarity=0.100 Sum_probs=64.9
Q ss_pred EEEEe-eCCeEEEEEEEEE--eCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEec---chhhHHHHhHh
Q 002860 743 CAILT-VNSSVVSAGILRV--FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWTD 816 (873)
Q Consensus 743 ~~vL~-~~~~vVsaA~lri--~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlp---A~~~a~~~w~~ 816 (873)
.++.+ .++++||.+.+.. ...+.+.+-.++|+|+|||+|+|+.|++.+++.+...++.++.+. .-..|..+|.+
T Consensus 41 ~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k 120 (157)
T TIGR02406 41 SIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFKA 120 (157)
T ss_pred EEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHH
Confidence 34555 4679999876543 234568889999999999999999999999999988888877765 35567889988
Q ss_pred ccCcEEcCH
Q 002860 817 KFGFKKIDP 825 (873)
Q Consensus 817 ~fGF~~i~~ 825 (873)
+||+....
T Consensus 121 -~G~~~~~~ 128 (157)
T TIGR02406 121 -LARRRGVH 128 (157)
T ss_pred -hCcccCCC
Confidence 99987444
No 49
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.89 E-value=6.3e-05 Score=68.04 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=54.6
Q ss_pred eEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEe-c-chhhHHHHhHhccCcEEcCH
Q 002860 751 SVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL-P-AAEEAESIWTDKFGFKKIDP 825 (873)
Q Consensus 751 ~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvl-p-A~~~a~~~w~~~fGF~~i~~ 825 (873)
+.+..+.-.+.... ++|-.+.|.|+|||+|+|+.|+.+|.+.+...|...++. . .-..|..+|++ +||+.+.+
T Consensus 8 ~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 8 ELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp CCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred CccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH-cCCEEEEE
Confidence 44455554454544 999999999999999999999999999988888765433 2 34457899999 99998753
No 50
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.88 E-value=4.4e-05 Score=90.86 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=67.2
Q ss_pred CcEEEEEee--CCeEEEEEEEEEe------CCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecc---hh
Q 002860 740 GMYCAILTV--NSSVVSAGILRVF------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AE 808 (873)
Q Consensus 740 gfy~~vL~~--~~~vVsaA~lri~------g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA---~~ 808 (873)
+.+.++.+. ++++||.+....+ +...++|-.++|+|+|||+|+|++||..+++.++..|+.++.|.. -.
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 333355553 6899999875322 123478889999999999999999999999999999999887653 46
Q ss_pred hHHHHhHhccCcEEcCH
Q 002860 809 EAESIWTDKFGFKKIDP 825 (873)
Q Consensus 809 ~a~~~w~~~fGF~~i~~ 825 (873)
.|..||.+ +||..++.
T Consensus 202 ~Ai~fY~k-lGf~~~~~ 217 (547)
T TIGR03103 202 QAIALYEK-LGFRRIPV 217 (547)
T ss_pred HHHHHHHH-CCCEEeeE
Confidence 78999998 99987653
No 51
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=97.86 E-value=9.3e-05 Score=72.00 Aligned_cols=80 Identities=21% Similarity=0.278 Sum_probs=64.1
Q ss_pred EEEe-eCCeEEEEEEEEEeCC--ceeeeeeeeeccCCcCCChhHHHHHHHHHHh-hhcCceEEEecc---hhhHHHHhHh
Q 002860 744 AILT-VNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPA---AEEAESIWTD 816 (873)
Q Consensus 744 ~vL~-~~~~vVsaA~lri~g~--~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l-~~lgV~~lvlpA---~~~a~~~w~~ 816 (873)
+++. .+|++||.+.++.... ..+++- +-+.++||++|+|+.|+..|++.+ ..+|+++|.+-. -..+..+|++
T Consensus 53 ~~v~~~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~ 131 (155)
T PF13420_consen 53 FLVAEEDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKK 131 (155)
T ss_dssp EEEEECTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHH
T ss_pred EEEEEcCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHh
Confidence 3444 5999999999986553 577777 445599999999999999999999 999999887543 4568999999
Q ss_pred ccCcEEcCH
Q 002860 817 KFGFKKIDP 825 (873)
Q Consensus 817 ~fGF~~i~~ 825 (873)
+||...+.
T Consensus 132 -~GF~~~g~ 139 (155)
T PF13420_consen 132 -LGFEEEGE 139 (155)
T ss_dssp -TTEEEEEE
T ss_pred -CCCEEEEE
Confidence 99998764
No 52
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=97.85 E-value=3.9e-05 Score=76.08 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=62.4
Q ss_pred eEEEEEEEE-EeCC----ceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCc-eEEEecchh---hHHHHhHhccCcE
Q 002860 751 SVVSAGILR-VFGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRV-KSIVLPAAE---EAESIWTDKFGFK 821 (873)
Q Consensus 751 ~vVsaA~lr-i~g~----~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV-~~lvlpA~~---~a~~~w~~~fGF~ 821 (873)
+++|....+ +.+. ..++|-.+||+|+|||+|+|++|++.+++.+...+. ..++|-... .|+.+|.+ +||.
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~-~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRK-LGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHH-cCCE
Confidence 477777775 3333 278999999999999999999999999999999886 777766553 58999999 9999
Q ss_pred EcCHHH
Q 002860 822 KIDPEL 827 (873)
Q Consensus 822 ~i~~~~ 827 (873)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 987644
No 53
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK10514 putative acetyltransferase; Provisional
Probab=97.81 E-value=5.5e-05 Score=72.89 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=58.7
Q ss_pred EEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEcC
Q 002860 745 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 824 (873)
Q Consensus 745 vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~i~ 824 (873)
++..++++||.+.+.- .++..+++.|+|||+|+|++|++.+++.+.. +...+...-..+..+|++ +||+..+
T Consensus 54 ~~~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~yek-~Gf~~~~ 125 (145)
T PRK10514 54 AVDERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYKK-MGFKVTG 125 (145)
T ss_pred EEecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHHH-CCCEEec
Confidence 3456789999887642 3456799999999999999999999997643 344455566789999998 9999987
Q ss_pred HHH
Q 002860 825 PEL 827 (873)
Q Consensus 825 ~~~ 827 (873)
...
T Consensus 126 ~~~ 128 (145)
T PRK10514 126 RSE 128 (145)
T ss_pred ccc
Confidence 644
No 55
>PRK01346 hypothetical protein; Provisional
Probab=97.80 E-value=6.8e-05 Score=85.62 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=66.9
Q ss_pred EEEeeCCeEEEEEEEEEe------CC--ceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhH
Q 002860 744 AILTVNSSVVSAGILRVF------GQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 815 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~------g~--~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~ 815 (873)
++++.++++||.+.+..+ +. ..+.|-.|+|+|+|||+|+|++||..+++.++..|+..++|.+.. ..||.
T Consensus 50 ~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y~ 127 (411)
T PRK01346 50 LGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIYG 127 (411)
T ss_pred EEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHh
Confidence 466789999999887543 22 468899999999999999999999999999999999888887665 46899
Q ss_pred hccCcEEcCH
Q 002860 816 DKFGFKKIDP 825 (873)
Q Consensus 816 ~~fGF~~i~~ 825 (873)
+ |||.....
T Consensus 128 r-~Gf~~~~~ 136 (411)
T PRK01346 128 R-FGYGPATY 136 (411)
T ss_pred h-CCCeeccc
Confidence 8 99987765
No 56
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=97.79 E-value=8.5e-05 Score=59.03 Aligned_cols=61 Identities=20% Similarity=0.117 Sum_probs=54.5
Q ss_pred EEEeeCCeEEEEEEEEEeC--CceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEe
Q 002860 744 AILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL 804 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g--~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvl 804 (873)
+++..++++||.+.+.... ...++|-.++++++|||+|+|+.|+..+.+.+...|++++++
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3556789999999988766 478999999999999999999999999999999999998875
No 57
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.78 E-value=6.2e-05 Score=80.65 Aligned_cols=84 Identities=20% Similarity=0.208 Sum_probs=69.9
Q ss_pred cEEEEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceE-EEecc-hhhHHHHhHhcc
Q 002860 741 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS-IVLPA-AEEAESIWTDKF 818 (873)
Q Consensus 741 fy~~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~-lvlpA-~~~a~~~w~~~f 818 (873)
+.++.+..+|+||+.|...-.+..+|+|-.|.|.|+|||+||+.+|+..+-..+...|-.. |+..+ -+-|..+|.+ +
T Consensus 177 ~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~r-i 255 (268)
T COG3393 177 SRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQR-I 255 (268)
T ss_pred eeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHH-h
Confidence 4444456677999999999999999999999999999999999999999988888888665 44433 3457889999 9
Q ss_pred CcEEcCH
Q 002860 819 GFKKIDP 825 (873)
Q Consensus 819 GF~~i~~ 825 (873)
||..+++
T Consensus 256 GF~~~g~ 262 (268)
T COG3393 256 GFREIGE 262 (268)
T ss_pred CCeecce
Confidence 9998774
No 58
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.78 E-value=1e-05 Score=88.30 Aligned_cols=50 Identities=34% Similarity=0.921 Sum_probs=43.3
Q ss_pred ccCCCcccccCCCCCCCCcccccCCCCceEeccC--CC-CccccccCCCCCCCCCCcccccccc
Q 002860 478 KNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CP-RAFHKECASLSSIPQGDWYCKYCQN 538 (873)
Q Consensus 478 ~~~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~--C~-~afH~~CL~L~~vP~g~W~C~~C~~ 538 (873)
..++..+|.|... .+|+|+-||. |+ ..||..|+||...|.|.|||+.|+.
T Consensus 215 d~~e~~yC~Cnqv-----------syg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 215 DPDEPTYCICNQV-----------SYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKA 267 (274)
T ss_pred CCCCCEEEEeccc-----------ccccccccCCCCCCcceEEEeccccccCCCCcccchhhhh
Confidence 3456678877742 5899999999 99 8999999999999999999999985
No 59
>PHA01807 hypothetical protein
Probab=97.75 E-value=6.8e-05 Score=75.13 Aligned_cols=73 Identities=7% Similarity=0.005 Sum_probs=59.3
Q ss_pred EEEeeCCeEEEEEEEEEeCC----ceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchh---hHHHHhHh
Q 002860 744 AILTVNSSVVSAGILRVFGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE---EAESIWTD 816 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g~----~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~---~a~~~w~~ 816 (873)
++++.++++||.+.+..... .+.+|..+.|+|+|||+|+|+.||+.+++.++..|+..|++-... .|..+|.+
T Consensus 56 lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~ 135 (153)
T PHA01807 56 LLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRR 135 (153)
T ss_pred EEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHh
Confidence 56678999999999865432 334455579999999999999999999999999999998877654 46778887
No 60
>PRK10562 putative acetyltransferase; Provisional
Probab=97.72 E-value=0.00013 Score=70.90 Aligned_cols=76 Identities=11% Similarity=0.096 Sum_probs=59.0
Q ss_pred EEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEc
Q 002860 744 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 823 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~i 823 (873)
+++..++++||.+.+.. ...+..+++.++|||+|+|+.|++.+++.+..+ .-.+...-..+..||++ +||..+
T Consensus 51 ~v~~~~~~~iG~~~~~~----~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~--~~~v~~~N~~s~~~y~k-~Gf~~~ 123 (145)
T PRK10562 51 WVWEEDGKLLGFVSVLE----GRFVGALFVAPKAVRRGIGKALMQHVQQRYPHL--SLEVYQKNQRAVNFYHA-QGFRIV 123 (145)
T ss_pred EEEEECCEEEEEEEEee----ccEEEEEEECHHHcCCCHHHHHHHHHHhhCCeE--EEEEEcCChHHHHHHHH-CCCEEc
Confidence 35567789999988743 246778999999999999999999999976543 22333455678999999 999998
Q ss_pred CHH
Q 002860 824 DPE 826 (873)
Q Consensus 824 ~~~ 826 (873)
+..
T Consensus 124 ~~~ 126 (145)
T PRK10562 124 DSA 126 (145)
T ss_pred ccc
Confidence 863
No 61
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.72 E-value=1.5e-05 Score=64.67 Aligned_cols=46 Identities=41% Similarity=1.174 Sum_probs=37.1
Q ss_pred ccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCC----CCCCCCcccccccc
Q 002860 484 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLS----SIPQGDWYCKYCQN 538 (873)
Q Consensus 484 ~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~----~vP~g~W~C~~C~~ 538 (873)
+|.+|++. .+.++|+.|+.|.+.||..|+++. ..+.+.|+|+.|+.
T Consensus 1 ~C~vC~~~---------~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQS---------DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSS---------CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCc---------CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 47888862 157899999999999999999864 34556999999974
No 62
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.67 E-value=0.00023 Score=72.01 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=65.8
Q ss_pred EEEEeeCCeEEEEEEEEEeC--CceeeeeeeeeccCCcCCChhHHHHHHHHHHhh-hcCceEEEecc---hhhHHHHhHh
Q 002860 743 CAILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPA---AEEAESIWTD 816 (873)
Q Consensus 743 ~~vL~~~~~vVsaA~lri~g--~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~-~lgV~~lvlpA---~~~a~~~w~~ 816 (873)
.++++.++++||.+.+.... ...+++- +++.++|||+|+|+.++..+.+.+. .+|++++++.. -..+..+|.+
T Consensus 59 ~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek 137 (186)
T PRK15130 59 RFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRK 137 (186)
T ss_pred EEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHH
Confidence 34567899999999886543 2456774 8999999999999999999998775 68999988764 3468999999
Q ss_pred ccCcEEcCH
Q 002860 817 KFGFKKIDP 825 (873)
Q Consensus 817 ~fGF~~i~~ 825 (873)
+||+..+.
T Consensus 138 -~GF~~~~~ 145 (186)
T PRK15130 138 -LGFEVEGE 145 (186)
T ss_pred -CCCEEEEE
Confidence 99998765
No 63
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.66 E-value=0.00019 Score=79.82 Aligned_cols=81 Identities=11% Similarity=0.041 Sum_probs=67.6
Q ss_pred cEEEEEee---CCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecc-----hhhHHH
Q 002860 741 MYCAILTV---NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA-----AEEAES 812 (873)
Q Consensus 741 fy~~vL~~---~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA-----~~~a~~ 812 (873)
.|++.+.. ++.+||.+.++.. .+.++|-.+++++.+||+|+|++||..+++.++..|++.+++.. -..|..
T Consensus 231 ~~~~~~~d~~gd~givG~~~~~~~-~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~ 309 (320)
T TIGR01686 231 IVTVSMSDRFGDSGIIGIFVFEKK-EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLS 309 (320)
T ss_pred EEEEEEEecCCCCceEEEEEEEec-CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHH
Confidence 45454432 5689999988764 46789999999999999999999999999999999999888854 346899
Q ss_pred HhHhccCcEEc
Q 002860 813 IWTDKFGFKKI 823 (873)
Q Consensus 813 ~w~~~fGF~~i 823 (873)
||.+ +||...
T Consensus 310 fY~~-~GF~~~ 319 (320)
T TIGR01686 310 FYEQ-IGFEDE 319 (320)
T ss_pred HHHH-cCCccC
Confidence 9998 999854
No 64
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.65 E-value=2.1e-05 Score=83.99 Aligned_cols=50 Identities=32% Similarity=0.787 Sum_probs=41.4
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCcccc-cccc
Q 002860 480 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCK-YCQN 538 (873)
Q Consensus 480 ~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~-~C~~ 538 (873)
-+...|.+|++.. -..++++||.|+++||..|+||..+|.|.|.|. +|..
T Consensus 312 ~~C~lC~IC~~P~---------~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 312 SSCELCRICLGPV---------IESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCRE 362 (381)
T ss_pred cccHhhhccCCcc---------cchheeccccccCCCCccccccccccCccchhhhHHHH
Confidence 3455677787654 356899999999999999999999999999998 5654
No 65
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.62 E-value=0.00035 Score=68.21 Aligned_cols=85 Identities=15% Similarity=0.138 Sum_probs=66.2
Q ss_pred CcEEEEEeeCCeEEEEEEEEE------eCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhc-CceEEEecchh---h
Q 002860 740 GMYCAILTVNSSVVSAGILRV------FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAE---E 809 (873)
Q Consensus 740 gfy~~vL~~~~~vVsaA~lri------~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~l-gV~~lvlpA~~---~ 809 (873)
+.+.+|++.||++||.+.+.- .......+-.+++.++|||+|+|+.++.++.+.+..- +++++++.... .
T Consensus 47 ~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~ 126 (152)
T PF13523_consen 47 GHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTR 126 (152)
T ss_dssp TEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HH
T ss_pred CceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHH
Confidence 556678899999999887642 1345677889999999999999999999998887655 79999988755 5
Q ss_pred HHHHhHhccCcEEcCH
Q 002860 810 AESIWTDKFGFKKIDP 825 (873)
Q Consensus 810 a~~~w~~~fGF~~i~~ 825 (873)
++..|++ +||+.++.
T Consensus 127 ~~~~~~k-~GF~~~g~ 141 (152)
T PF13523_consen 127 AIRLYEK-AGFRKVGE 141 (152)
T ss_dssp HHHHHHH-TT-EEEEE
T ss_pred HHHHHHH-cCCEEeeE
Confidence 7889998 99998764
No 66
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.62 E-value=2.1e-05 Score=94.39 Aligned_cols=51 Identities=37% Similarity=0.869 Sum_probs=43.3
Q ss_pred ccCCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCC--CCCCCCCCcccccccccc
Q 002860 478 KNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 540 (873)
Q Consensus 478 ~~~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~--L~~vP~g~W~C~~C~~~~ 540 (873)
...+...|.+|. ++|++++||.|+.+||..|++ +...|.+.|.|+.|....
T Consensus 43 ~~~~~e~c~ic~------------~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~ 95 (696)
T KOG0383|consen 43 DDAEQEACRICA------------DGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPK 95 (696)
T ss_pred chhhhhhhhhhc------------CCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCC
Confidence 344567899999 799999999999999999996 677888889999995543
No 67
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.59 E-value=0.00045 Score=67.17 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=65.5
Q ss_pred EEEeeCCeEEEEEEEEEeC--CceeeeeeeeeccCCcCCChhHHHHHHHHHHhh-hcCceEEEec---chhhHHHHhHhc
Q 002860 744 AILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLP---AAEEAESIWTDK 817 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g--~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~-~lgV~~lvlp---A~~~a~~~w~~~ 817 (873)
++++.+|++||.+.+.... ...+++... +.+.+| +|+|+.++.++++.+. .+|++++++. .-..+..+|.+
T Consensus 54 ~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k- 130 (156)
T TIGR03585 54 WIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEK- 130 (156)
T ss_pred EEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHH-
Confidence 3557899999999987655 456788655 889999 9999999999999977 4799998764 45578899999
Q ss_pred cCcEEcCHH
Q 002860 818 FGFKKIDPE 826 (873)
Q Consensus 818 fGF~~i~~~ 826 (873)
+||+.++..
T Consensus 131 ~Gf~~~g~~ 139 (156)
T TIGR03585 131 FGFEREGVF 139 (156)
T ss_pred cCCeEeeee
Confidence 999988753
No 68
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.58 E-value=2.4e-05 Score=83.05 Aligned_cols=39 Identities=36% Similarity=0.940 Sum_probs=34.2
Q ss_pred CCCceEeccCCCCccccccCC--CCCCCCCCcccccccccc
Q 002860 502 DGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 540 (873)
Q Consensus 502 dgG~Ll~Cd~C~~afH~~CL~--L~~vP~g~W~C~~C~~~~ 540 (873)
..++||+||.|+++||++||. +.+.|+|.|.|.-|...+
T Consensus 292 nddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 292 NDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred CCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 457899999999999999995 778899999999997644
No 69
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.55 E-value=0.00024 Score=83.89 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=63.8
Q ss_pred eCCeEEEEEEEEEeCCcee-----------eeeeeee--------ccCCcCCChhHHHHHHHHHHhhhcCceEEEecchh
Q 002860 748 VNSSVVSAGILRVFGQEVA-----------ELPLVAT--------SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE 808 (873)
Q Consensus 748 ~~~~vVsaA~lri~g~~~A-----------Eip~vAt--------~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~ 808 (873)
.++.+||-.+|+....+.. |+-..++ .++|||+|+|+.||+.+|+.|+..|+..+++.+..
T Consensus 421 ~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~ 500 (522)
T TIGR01211 421 KNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGI 500 (522)
T ss_pred CCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCc
Confidence 3578888888887654322 5554444 57899999999999999999999999999999999
Q ss_pred hHHHHhHhccCcEEcCH
Q 002860 809 EAESIWTDKFGFKKIDP 825 (873)
Q Consensus 809 ~a~~~w~~~fGF~~i~~ 825 (873)
.|..||.+ +||...++
T Consensus 501 ~A~~FY~k-lGf~~~g~ 516 (522)
T TIGR01211 501 GVREYYRK-LGYELDGP 516 (522)
T ss_pred hHHHHHHH-CCCEEEcc
Confidence 99999998 99998764
No 70
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.54 E-value=0.00042 Score=72.16 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=61.0
Q ss_pred CcEEEEEeeCC--eEEEEEEEEEeC-------------------------------------CceeeeeeeeeccCCcCC
Q 002860 740 GMYCAILTVNS--SVVSAGILRVFG-------------------------------------QEVAELPLVATSKINHGK 780 (873)
Q Consensus 740 gfy~~vL~~~~--~vVsaA~lri~g-------------------------------------~~~AEip~vAt~~~~r~q 780 (873)
+...+++..++ +|++|+-+-..| -.-+.|-+|||+|++|++
T Consensus 26 ~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~~ 105 (196)
T PF13718_consen 26 NHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQRM 105 (196)
T ss_dssp TEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-SS
T ss_pred cceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhhcC
Confidence 45557778888 999999887766 236789999999999999
Q ss_pred ChhHHHHHHHHHHh-------------------------hhcCceEEEec--chhhHHHHhHhccCcEEcCH
Q 002860 781 GYFQLLFACIEKLL-------------------------SFLRVKSIVLP--AAEEAESIWTDKFGFKKIDP 825 (873)
Q Consensus 781 G~gr~L~~~iE~~l-------------------------~~lgV~~lvlp--A~~~a~~~w~~~fGF~~i~~ 825 (873)
|||++|++.+++.+ ...+|..|=.. +.++...||.+ .||.++--
T Consensus 106 G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k-~gf~pv~l 176 (196)
T PF13718_consen 106 GYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQK-NGFVPVYL 176 (196)
T ss_dssp SHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHC-TT-EEEEE
T ss_pred CHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHH-CCcEEEEE
Confidence 99999999999999 46677765544 56788999999 99998743
No 71
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.52 E-value=2.2e-05 Score=95.74 Aligned_cols=132 Identities=24% Similarity=0.390 Sum_probs=86.1
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCC--CCCCCCCCccccccccccchhhcccccccccccCc
Q 002860 480 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGR 557 (873)
Q Consensus 480 ~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~--L~~vP~g~W~C~~C~~~~~~ek~v~~n~~~va~gr 557 (873)
.-+++|..|+ +.|.++||..||+.||..|.. ...+|...|.|--|... +. +. .
T Consensus 342 ~~ddhcrf~~------------d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~h--kv-------ng----v 396 (1414)
T KOG1473|consen 342 EYDDHCRFCH------------DLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIH--KV-------NG----V 396 (1414)
T ss_pred eecccccccC------------cccceeecccCCceEEeeecCCccccCCCccchhhhhhhh--cc-------Cc----c
Confidence 4467899999 799999999999999999995 66789999999999752 11 00 0
Q ss_pred cccccch-hhhh-hhhh-----hhcccccccCCceeeccCCCCCCCCCCCCceeeCCC-CCCccCc-ccCCcCCCCcccC
Q 002860 558 VSGVDSV-EQIT-KRCI-----RIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQ-CEREFHV-GCLKKHKMADLRE 628 (873)
Q Consensus 558 ~~gvd~i-e~i~-~rc~-----R~~k~~~~~~~~C~iC~~~d~~~sg~~~g~LL~CDq-C~rafHv-~CL~p~~~~~L~e 628 (873)
+.++-+. +.+. .|+. |.-...-....-|.||+. +++++.|+. |++.||. .||+..-. -..
T Consensus 397 vd~vl~~~K~~~~iR~~~iG~dr~gr~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~~--e~~ 465 (1414)
T KOG1473|consen 397 VDCVLPPSKNVDSIRHTPIGRDRYGRKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTYV--EMY 465 (1414)
T ss_pred cccccChhhcccceeccCCCcCccccchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHHH--HHh
Confidence 1011100 0000 0111 111111112234999984 578999998 9999999 99984321 246
Q ss_pred CCCCCceecCCchhhHhHHH
Q 002860 629 LPKGKWFCCMDCSRINSVLQ 648 (873)
Q Consensus 629 ~P~g~WfC~~~C~~I~~~Lq 648 (873)
++++-|+| .+|-.-+.+|.
T Consensus 466 L~d~i~~~-~ee~~rqM~lT 484 (1414)
T KOG1473|consen 466 LCDGIWER-REEIIRQMGLT 484 (1414)
T ss_pred hccchhhh-HHHHHHhccch
Confidence 78999999 88865444443
No 72
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.40 E-value=0.00067 Score=69.22 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhhcCCCcccCCcCCCcchhhhhcccCCCceecCcEEEEEeeCCeEEEEEEEEEe--C---Cceeeeeeee
Q 002860 698 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVF--G---QEVAELPLVA 772 (873)
Q Consensus 698 ~~L~~Al~If~EcF~Piid~~TgrDLIp~mvy~~~~~~~~f~gfy~~vL~~~~~vVsaA~lri~--g---~~~AEip~vA 772 (873)
.......++.++.|.|- ...+++..+ |...+.++.= .+|...++++|+-..+--. + ...--|-.+|
T Consensus 12 ~d~~~i~~~~~~aF~~~----~e~~~v~~l---R~~~~~~~~L--slVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLa 82 (171)
T COG3153 12 ADIPAIEALTREAFGPG----REAKLVDKL---REGGRPDLTL--SLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLA 82 (171)
T ss_pred hhHHHHHHHHHHHhhcc----hHHHHHHHH---HhcCCcccce--eEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEE
Confidence 33455566777888633 233344332 2222222222 2455778999997776532 2 2456678899
Q ss_pred eccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEcCHHHHHHHHhhcCceeeeCCCeeeeeccc
Q 002860 773 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKRVP 852 (873)
Q Consensus 773 t~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~i~~~~~~~~~~~~~~ll~F~gt~~l~K~l~ 852 (873)
|+|+|||||+|++||...++.|+..|...+++--. -.+| .+|||.......+. . +.. +|.+.+|-+.|.
T Consensus 83 V~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGd---p~YY-~rfGF~~~~~~~l~---~---p~~-~~~~~fl~~~L~ 151 (171)
T COG3153 83 VDPEYQGQGIGSALVREGLEALRLAGASAVVVLGD---PTYY-SRFGFEPAAGAKLY---A---PGP-VPDERFLALELG 151 (171)
T ss_pred EchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecC---cccc-cccCcEEccccccc---c---CCC-CCCceEEEEEcc
Confidence 99999999999999999999999999999888766 4567 45999998876541 1 222 677788888776
Q ss_pred CC
Q 002860 853 AC 854 (873)
Q Consensus 853 ~~ 854 (873)
.-
T Consensus 152 ~~ 153 (171)
T COG3153 152 DG 153 (171)
T ss_pred CC
Confidence 53
No 74
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.33 E-value=0.00029 Score=71.07 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=65.8
Q ss_pred EEEEEee--CCeEEEEEEEEEeC--CceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhc
Q 002860 742 YCAILTV--NSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDK 817 (873)
Q Consensus 742 y~~vL~~--~~~vVsaA~lri~g--~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~ 817 (873)
.+.+|.. +.+|||-++|--.- ...--+-.|.|..++||+|||+.||+.+|..++..|.+.+.|.+.++ ..||++
T Consensus 56 ~sL~Ll~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe~- 133 (225)
T KOG3397|consen 56 MSLLLLNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYES- 133 (225)
T ss_pred eeeeeecccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhhh-
Confidence 3455543 45666666654333 24556788999999999999999999999999999999999998866 579999
Q ss_pred cCcEEcCHHH
Q 002860 818 FGFKKIDPEL 827 (873)
Q Consensus 818 fGF~~i~~~~ 827 (873)
+||+.-+.-+
T Consensus 134 lGYe~c~Pi~ 143 (225)
T KOG3397|consen 134 LGYEKCDPIV 143 (225)
T ss_pred hcccccCcee
Confidence 9999766633
No 75
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.31 E-value=0.00092 Score=68.11 Aligned_cols=83 Identities=8% Similarity=0.125 Sum_probs=65.1
Q ss_pred cEEEEEeeCCeEEEEEEEEEeCC---ceeeeeeeeeccCCcCCChhHHHHHHHHHHhhh-cCceEEEecchh---hHHHH
Q 002860 741 MYCAILTVNSSVVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAE---EAESI 813 (873)
Q Consensus 741 fy~~vL~~~~~vVsaA~lri~g~---~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~-lgV~~lvlpA~~---~a~~~ 813 (873)
+|.+++..++++||.+.+..... ..+||- +.+.++|||||+|+.++..+.+.+.. +|+++|++.... .+..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 45444455789999999876543 345655 45789999999999999999999865 799998887754 57889
Q ss_pred hHhccCcEEcCH
Q 002860 814 WTDKFGFKKIDP 825 (873)
Q Consensus 814 w~~~fGF~~i~~ 825 (873)
+.+ +||...+.
T Consensus 156 ~ek-~Gf~~~g~ 166 (194)
T PRK10809 156 LAR-LGFEKEGY 166 (194)
T ss_pred HHH-CCCcEEee
Confidence 998 99997665
No 76
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.28 E-value=0.00011 Score=86.32 Aligned_cols=120 Identities=24% Similarity=0.436 Sum_probs=71.1
Q ss_pred CCCceEeccCCCCccccccCC--CCCCCCCCccccccccccchhhcccccccccccCccccccchhhhhhhhhhhccccc
Q 002860 502 DGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLE 579 (873)
Q Consensus 502 dgG~Ll~Cd~C~~afH~~CL~--L~~vP~g~W~C~~C~~~~~~ek~v~~n~~~va~gr~~gvd~ie~i~~rc~R~~k~~~ 579 (873)
|...+++|+.|+.+||-+|.. ...+|.|.|+|+.|....+.+.-++.+.. +.... ...|+ ..
T Consensus 79 D~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~----------~~~~~-~~~~~-----~c 142 (694)
T KOG4443|consen 79 DPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSL----------DLQEG-YLQCA-----PC 142 (694)
T ss_pred CcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccch----------hhhcc-Ccccc-----cc
Confidence 567899999999999999995 68899999999988654332221111000 00000 00011 11
Q ss_pred ccCCceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCCCCceecCCch
Q 002860 580 AELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 641 (873)
Q Consensus 580 ~~~~~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~ 641 (873)
....+|.+|-..... ...-.+++|++|.+|-|..|-....+..+...-+-.+.| ..|.
T Consensus 143 ~s~~~cPvc~~~Y~~---~e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~C-S~CR 200 (694)
T KOG4443|consen 143 ASLSYCPVCLIVYQD---SESLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKC-STCR 200 (694)
T ss_pred cccccCchHHHhhhh---ccchhhHHHHHhcccccCCCCccchHHHHHHhhhhhccc-ceee
Confidence 123457777654211 123345999999999999998754321111111236788 8887
No 77
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.19 E-value=0.0021 Score=61.12 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=60.8
Q ss_pred cEEEEEee--CCeEEEEEEEEEe--CCceeeeeeeeeccCCcCCChhHHHHHHHHHHh-hhcCceEEEecchh---hHHH
Q 002860 741 MYCAILTV--NSSVVSAGILRVF--GQEVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPAAE---EAES 812 (873)
Q Consensus 741 fy~~vL~~--~~~vVsaA~lri~--g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l-~~lgV~~lvlpA~~---~a~~ 812 (873)
+|.+++.. ++++||...++.. ....+||. +.+.++|||+|+|+.++..+.+.+ ..+|+.++.+.... .+..
T Consensus 56 ~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~ 134 (142)
T PF13302_consen 56 YYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRR 134 (142)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHH
T ss_pred ceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHH
Confidence 44444443 4579999998443 46899999 668889999999999999999998 79999998877654 3566
Q ss_pred HhHhccCcE
Q 002860 813 IWTDKFGFK 821 (873)
Q Consensus 813 ~w~~~fGF~ 821 (873)
++.+ +||+
T Consensus 135 ~~~k-~GF~ 142 (142)
T PF13302_consen 135 LLEK-LGFE 142 (142)
T ss_dssp HHHH-TT-E
T ss_pred HHHH-cCCC
Confidence 7776 9995
No 78
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.19 E-value=0.0022 Score=64.43 Aligned_cols=81 Identities=7% Similarity=0.070 Sum_probs=63.6
Q ss_pred EEEeeCCeEEEEEEEEEeCC--ceeeeeeeeeccCCcCCChhHHHHHHHHHHhh-hcCceEEEecchh---hHHHHhHhc
Q 002860 744 AILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPAAE---EAESIWTDK 817 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g~--~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~-~lgV~~lvlpA~~---~a~~~w~~~ 817 (873)
+++..++++||.+.+..... ..+||.. .+.++|||+|||+.++.++.+.+. .+|++++.+.+.. .+..++.+
T Consensus 70 ~~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek- 147 (179)
T PRK10151 70 FMIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALR- 147 (179)
T ss_pred EEEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHH-
Confidence 44456899999999876543 5688875 589999999999999998888775 5789998776433 46778887
Q ss_pred cCcEEcCHH
Q 002860 818 FGFKKIDPE 826 (873)
Q Consensus 818 fGF~~i~~~ 826 (873)
+||+..+..
T Consensus 148 ~Gf~~~g~~ 156 (179)
T PRK10151 148 NGFTLEGCL 156 (179)
T ss_pred CCCEEEeEe
Confidence 999987653
No 79
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.06 E-value=0.0026 Score=64.92 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=78.5
Q ss_pred cCcEEEEEeeC-CeEEEEEEEEEeCC-----ceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEec--chhhH
Q 002860 739 GGMYCAILTVN-SSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP--AAEEA 810 (873)
Q Consensus 739 ~gfy~~vL~~~-~~vVsaA~lri~g~-----~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlp--A~~~a 810 (873)
.||+.+|++.+ |+++|-|.+..|-. .++|. .|=+++++||+|+|++|++++.+.+..+|++.++.. +...|
T Consensus 50 ~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~a 128 (169)
T COG1247 50 DGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLA 128 (169)
T ss_pred CCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcH
Confidence 46887888765 99999998877663 34443 355789999999999999999999999999987643 22234
Q ss_pred HHHhHhccCcEEcCHHHHHHHHhhcCceeeeCCCeeeeecccC
Q 002860 811 ESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKRVPA 853 (873)
Q Consensus 811 ~~~w~~~fGF~~i~~~~~~~~~~~~~~ll~F~gt~~l~K~l~~ 853 (873)
.--...+|||...+....--+ ..-.+-.+.+||+.|..
T Consensus 129 Si~lh~~~GF~~~G~~~~vg~-----k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 129 SIALHEKLGFEEVGTFPEVGD-----KFGRWLDLVLMQLLLEE 166 (169)
T ss_pred hHHHHHHCCCEEecccccccc-----ccceEEeeeeeehhhcc
Confidence 444555599999988433211 23446677788887754
No 80
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.99 E-value=0.00026 Score=84.04 Aligned_cols=48 Identities=33% Similarity=0.877 Sum_probs=39.7
Q ss_pred CcccccCCCCCCCCcccccCCCCceEeccCCCCc-cccccCC--CCCCCCCCcccccccc
Q 002860 482 GIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRA-FHKECAS--LSSIPQGDWYCKYCQN 538 (873)
Q Consensus 482 ~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~a-fH~~CL~--L~~vP~g~W~C~~C~~ 538 (873)
...|.+|... ...+-||+||+|..+ ||.+||+ |.++|-+.|||+.|.-
T Consensus 215 ~~~C~IC~~~---------DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 215 EVKCDICTVH---------DPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred cccceeeccC---------ChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 3568888742 246689999999999 9999997 6789999999999964
No 81
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.90 E-value=0.00037 Score=76.23 Aligned_cols=36 Identities=39% Similarity=1.011 Sum_probs=31.2
Q ss_pred CCceeeCCC--CC-CccCcccCCcCCCCcccCCCCCCceecCCchh
Q 002860 600 PRTILLCDQ--CE-REFHVGCLKKHKMADLRELPKGKWFCCMDCSR 642 (873)
Q Consensus 600 ~g~LL~CDq--C~-rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~~ 642 (873)
-+.|+.||. |+ .|||..|+. |...|.|+||| +.|..
T Consensus 229 yg~Mi~CDn~~C~~eWFH~~CVG------L~~~PkgkWyC-~~C~~ 267 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIEWFHFTCVG------LKTKPKGKWYC-PRCKA 267 (274)
T ss_pred cccccccCCCCCCcceEEEeccc------cccCCCCcccc-hhhhh
Confidence 578999998 99 999999995 67889999999 58853
No 82
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.79 E-value=0.00062 Score=72.31 Aligned_cols=45 Identities=38% Similarity=1.071 Sum_probs=36.0
Q ss_pred CceeeccCCCCCCCCCCCCceeeCC--CCC-CccCcccCCcCCCCcccCCCCCCceecCCchh
Q 002860 583 SGCLLCRGCDFSKSGFGPRTILLCD--QCE-REFHVGCLKKHKMADLRELPKGKWFCCMDCSR 642 (873)
Q Consensus 583 ~~C~iC~~~d~~~sg~~~g~LL~CD--qC~-rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~~ 642 (873)
.+| .|.... =|.|+-|| .|+ -|||..|+. |++.|+|.||| ++|+.
T Consensus 222 lYC-fCqqvS-------yGqMVaCDn~nCkrEWFH~~CVG------Lk~pPKG~WYC-~eCk~ 269 (271)
T COG5034 222 LYC-FCQQVS-------YGQMVACDNANCKREWFHLECVG------LKEPPKGKWYC-PECKK 269 (271)
T ss_pred eEE-Eecccc-------cccceecCCCCCchhheeccccc------cCCCCCCcEeC-HHhHh
Confidence 345 477654 36899999 698 579999994 78999999999 89975
No 83
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.75 E-value=0.00028 Score=54.05 Aligned_cols=34 Identities=44% Similarity=1.111 Sum_probs=21.1
Q ss_pred CceEeccCCCCccccccCCCCCCCCC-Cccccccc
Q 002860 504 GNLLPCDGCPRAFHKECASLSSIPQG-DWYCKYCQ 537 (873)
Q Consensus 504 G~Ll~Cd~C~~afH~~CL~L~~vP~g-~W~C~~C~ 537 (873)
+.|+.|++|.-..|+.|+++..+|++ +|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 47999999999999999999999988 79999884
No 84
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.73 E-value=0.00079 Score=76.76 Aligned_cols=124 Identities=27% Similarity=0.575 Sum_probs=74.4
Q ss_pred ccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCC---CCCCC-------Cccccccccccch-hhcccccccc
Q 002860 484 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLS---SIPQG-------DWYCKYCQNMFER-KRFLQHDANA 552 (873)
Q Consensus 484 ~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~---~vP~g-------~W~C~~C~~~~~~-ek~v~~n~~~ 552 (873)
.|.+|...-+. |-|+++-||.|+...|-.|++.. .+|.+ .|||--|+..+.- .--+-+|..
T Consensus 121 iCcVClg~rs~-------da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~- 192 (707)
T KOG0957|consen 121 ICCVCLGQRSV-------DAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRF- 192 (707)
T ss_pred EEEEeecCccc-------cccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcC-
Confidence 67777754443 77899999999999999999842 44543 5999999875431 111112221
Q ss_pred cccCccccccchhhhhhhh----------------hhhcccccc---cCCceeeccCCCCCCCCCCCCceeeCC--CCCC
Q 002860 553 VEAGRVSGVDSVEQITKRC----------------IRIVKNLEA---ELSGCLLCRGCDFSKSGFGPRTILLCD--QCER 611 (873)
Q Consensus 553 va~gr~~gvd~ie~i~~rc----------------~R~~k~~~~---~~~~C~iC~~~d~~~sg~~~g~LL~CD--qC~r 611 (873)
|.+...|...++...| .-.+..+.+ .-..|..|...-|.+. |..|.|| .|..
T Consensus 193 ---GifKetDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARt----Gvci~CdaGMCk~ 265 (707)
T KOG0957|consen 193 ---GIFKETDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFART----GVCIRCDAGMCKE 265 (707)
T ss_pred ---CcccccchhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccchhhhhc----ceeeeccchhhhh
Confidence 2222222111111111 111111111 1134999998777654 4678999 6999
Q ss_pred ccCcccCCcCC
Q 002860 612 EFHVGCLKKHK 622 (873)
Q Consensus 612 afHv~CL~p~~ 622 (873)
+||+.|.+-.|
T Consensus 266 YfHVTCAQk~G 276 (707)
T KOG0957|consen 266 YFHVTCAQKLG 276 (707)
T ss_pred hhhhhHHhhhc
Confidence 99999998765
No 85
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=96.60 E-value=0.022 Score=56.96 Aligned_cols=123 Identities=17% Similarity=0.153 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHhhhcCCCcccCCcCCCcchhhhhcccCCCceecCcEEEEEee-CCeEEEEEEEEEe-----CCceeee
Q 002860 695 ETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV-NSSVVSAGILRVF-----GQEVAEL 768 (873)
Q Consensus 695 e~~~~L~~Al~If~EcF~Piid~~TgrDLIp~mvy~~~~~~~~f~gfy~~vL~~-~~~vVsaA~lri~-----g~~~AEi 768 (873)
+.-..|-.-++.|.++=+|++. |..+|..+- |-...|.=.+.+.++. +.++||-|.+..+ +.+.--|
T Consensus 15 ~~i~rLikela~Fek~~~~v~~--te~~l~~~~-----F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYl 87 (163)
T KOG3216|consen 15 EDILRLIKELAEFEKLEDQVEA--TEENLARDG-----FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYL 87 (163)
T ss_pred HHHHHHHHHHHHHHHhccchhh--chhhhhhhh-----ccCCCccEEEEEEEecCCCceeEEeeeecccccccccceEEE
Confidence 4445566777788887777654 444444432 2222333344444554 7888888887642 2355567
Q ss_pred eeeeeccCCcCCChhHHHHHHHHHHhhhcCceE---EEecchhhHHHHhHhccCcEEcCH
Q 002860 769 PLVATSKINHGKGYFQLLFACIEKLLSFLRVKS---IVLPAAEEAESIWTDKFGFKKIDP 825 (873)
Q Consensus 769 p~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~---lvlpA~~~a~~~w~~~fGF~~i~~ 825 (873)
-=+=++++|||+|+|+.|++.+-+.+..+|+.+ +|+.--..|+.+|++ .|++..+.
T Consensus 88 eDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k-~gaq~l~~ 146 (163)
T KOG3216|consen 88 EDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEK-VGAQDLKE 146 (163)
T ss_pred EeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHH-hCccccce
Confidence 778899999999999999999999999999776 566667789999999 99987765
No 86
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.40 E-value=0.0012 Score=75.30 Aligned_cols=47 Identities=34% Similarity=0.917 Sum_probs=39.5
Q ss_pred CceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCC----CCceecCCc
Q 002860 583 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPK----GKWFCCMDC 640 (873)
Q Consensus 583 ~~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~----g~WfC~~~C 640 (873)
..|.||++.. +.-.+++||.|...||++||.| ||+.+|. ..|.| ..|
T Consensus 545 ysCgiCkks~------dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sEC 595 (707)
T KOG0957|consen 545 YSCGICKKST------DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SEC 595 (707)
T ss_pred eeeeeeccch------hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-ccc
Confidence 4599999763 5567899999999999999997 7888875 46999 899
No 87
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.27 E-value=0.024 Score=61.82 Aligned_cols=79 Identities=15% Similarity=-0.013 Sum_probs=56.1
Q ss_pred EEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEcC
Q 002860 745 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 824 (873)
Q Consensus 745 vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~i~ 824 (873)
++..+++||+.|.-.....+.+||- |+|+++|||+|+++++-..+......-|+-..|--+- .+-----.|+||+...
T Consensus 169 ~i~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~N-~~S~~lA~kLGf~~~~ 246 (265)
T PF12746_consen 169 CILHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCHN-LASIALAEKLGFHFDF 246 (265)
T ss_dssp EEEETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EESS-HHHHHHHHHCT--EEE
T ss_pred EEEECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCCC-HHHHHHHHHcCCcccc
Confidence 4467899999887666677888986 7899999999999999999999999999988886442 2222233359998654
Q ss_pred H
Q 002860 825 P 825 (873)
Q Consensus 825 ~ 825 (873)
+
T Consensus 247 ~ 247 (265)
T PF12746_consen 247 E 247 (265)
T ss_dssp E
T ss_pred e
Confidence 3
No 88
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.07 E-value=0.003 Score=62.85 Aligned_cols=27 Identities=41% Similarity=1.032 Sum_probs=23.8
Q ss_pred ccCcccCCcCCCCcccCCCCCCceecCCchhh
Q 002860 612 EFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 643 (873)
Q Consensus 612 afHv~CL~p~~~~~L~e~P~g~WfC~~~C~~I 643 (873)
.||+.||+| ||+++|+|+|+| +.|..-
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~C-p~C~~~ 27 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWIC-PFCEVE 27 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCC-CCCcCC
Confidence 599999997 899999999999 889643
No 89
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=95.92 E-value=0.015 Score=53.37 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=56.2
Q ss_pred EeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceE--EEecchhhHHHHhHhccCcEEc
Q 002860 746 LTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS--IVLPAAEEAESIWTDKFGFKKI 823 (873)
Q Consensus 746 L~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~--lvlpA~~~a~~~w~~~fGF~~i 823 (873)
|--+|.+||=.. -+..+||+.-.|.|+|||||+.+.++..+.+.|..+|+.- -|..+-+..+.+-.+ +||..+
T Consensus 4 lgpeG~PVSW~l----mdqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~-lg~~~~ 78 (89)
T PF08444_consen 4 LGPEGNPVSWSL----MDQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKS-LGFIFM 78 (89)
T ss_pred cCCCCCEeEEEE----ecccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHH-CCCeec
Confidence 344577777554 3678999999999999999999999999999999999873 222233344555555 899887
Q ss_pred C
Q 002860 824 D 824 (873)
Q Consensus 824 ~ 824 (873)
+
T Consensus 79 p 79 (89)
T PF08444_consen 79 P 79 (89)
T ss_pred C
Confidence 5
No 90
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=95.88 E-value=0.058 Score=52.65 Aligned_cols=80 Identities=19% Similarity=0.261 Sum_probs=56.7
Q ss_pred cEEEEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch------hhHHHHh
Q 002860 741 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA------EEAESIW 814 (873)
Q Consensus 741 fy~~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~------~~a~~~w 814 (873)
+|++ .-|+.++||+.+.+.|. -++|--+.|++.=||.|.|..|++.+.+.+... ....+.+. ..+...+
T Consensus 40 l~aA--rFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~p~i--~~w~l~~~~~~~~~~~~~~~F 114 (128)
T PF12568_consen 40 LFAA--RFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQLPDI--KHWWLADEGVEPQDRAVMAAF 114 (128)
T ss_dssp EEEE--EETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS-S----EEEE--TT-S--THHHHHHH
T ss_pred EEEE--EechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHCCCC--cEEEEecCCCcccchHHHHHH
Confidence 6654 78999999999999774 799999999999999999999999999998554 54444433 2344455
Q ss_pred HhccCcEEcCH
Q 002860 815 TDKFGFKKIDP 825 (873)
Q Consensus 815 ~~~fGF~~i~~ 825 (873)
...+||...++
T Consensus 115 m~a~GF~~~~~ 125 (128)
T PF12568_consen 115 MQACGFSAQSD 125 (128)
T ss_dssp HHHHT-EE-SS
T ss_pred HHHcCccccCC
Confidence 55599987653
No 91
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=95.87 E-value=0.034 Score=60.71 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=69.2
Q ss_pred cEEEEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCc
Q 002860 741 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 820 (873)
Q Consensus 741 fy~~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF 820 (873)
.++++.-.|++||+||++ .|. -|.-|||++.+||-|+.-.|+..|-..+-++|...||+-+-++-..++.. +||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGn---vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~-~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGN---VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQ-CGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccc---eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHh-CCc
Confidence 444444456999999994 553 38899999999999999999999999999999999999999999999998 999
Q ss_pred EEcCH
Q 002860 821 KKIDP 825 (873)
Q Consensus 821 ~~i~~ 825 (873)
..+..
T Consensus 111 ~~i~~ 115 (352)
T COG3053 111 SEIAS 115 (352)
T ss_pred eEeec
Confidence 99877
No 92
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.85 E-value=0.0044 Score=61.66 Aligned_cols=25 Identities=40% Similarity=1.132 Sum_probs=22.8
Q ss_pred ccccccCC--CCCCCCCCccccccccc
Q 002860 515 AFHKECAS--LSSIPQGDWYCKYCQNM 539 (873)
Q Consensus 515 afH~~CL~--L~~vP~g~W~C~~C~~~ 539 (873)
+||+.||+ |..+|+|+|+||.|...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCC
Confidence 59999995 89999999999999864
No 93
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.52 E-value=0.015 Score=71.00 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=48.6
Q ss_pred eeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEec--chhhHHHHhHhccCcEEcCH
Q 002860 766 AELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP--AAEEAESIWTDKFGFKKIDP 825 (873)
Q Consensus 766 AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlp--A~~~a~~~w~~~fGF~~i~~ 825 (873)
+.|-+|||+|++|++|||++|++.|.+++. .|+..+-.. +.++...||.+ .||.++--
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~r-nGF~pVhl 591 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLR-NGFVPVHL 591 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHH-cCeEEEEe
Confidence 678899999999999999999999999986 445544443 67889999999 99998743
No 94
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=95.48 E-value=0.0089 Score=59.66 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=50.9
Q ss_pred eeeeeeeeeccCCcCCChhHHHHHH-HHHHhhhcCceEEEecchhhHHHHhHhccCcEEcCH
Q 002860 765 VAELPLVATSKINHGKGYFQLLFAC-IEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 825 (873)
Q Consensus 765 ~AEip~vAt~~~~r~qG~gr~L~~~-iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~i~~ 825 (873)
-+.|-.+|+.|+||.||++..|+.. |..+-..--+++++|=+-+-.++||++ |||+.+++
T Consensus 101 ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr-~gFk~vgp 161 (190)
T KOG4144|consen 101 NIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYER-FGFKAVGP 161 (190)
T ss_pred ceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHh-cCceeecc
Confidence 3778889999999999999999876 444444444778999999999999999 99999998
No 95
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.48 E-value=0.0093 Score=74.97 Aligned_cols=56 Identities=25% Similarity=0.672 Sum_probs=44.3
Q ss_pred cCCceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCCCCceecCCchhhHhHH
Q 002860 581 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVL 647 (873)
Q Consensus 581 ~~~~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~~I~~~L 647 (873)
+...|.||.+++. .+.+.++.||.|..++|.+|.. .+-+|+|.|+| ..|.....+.
T Consensus 218 ~D~~C~iC~~~~~----~n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~s~~~~ 273 (1051)
T KOG0955|consen 218 EDAVCCICLDGEC----QNSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQSPQRP 273 (1051)
T ss_pred CCccceeeccccc----CCCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhccCcCcc
Confidence 4467999998863 3457899999999999999996 24578999999 9997544443
No 96
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=95.32 E-value=0.08 Score=47.26 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=48.4
Q ss_pred EEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEE
Q 002860 745 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI 802 (873)
Q Consensus 745 vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~l 802 (873)
.+..+|+.+|...++. ..++..|--.-|.+++||||+|+.|++.+-+.++.-|.+-+
T Consensus 3 ~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~ 59 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV 59 (78)
T ss_dssp EEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE
Confidence 3567788899999877 77899999999999999999999999999999999987644
No 97
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.27 E-value=0.0096 Score=70.53 Aligned_cols=51 Identities=29% Similarity=0.948 Sum_probs=42.5
Q ss_pred cCCceeeccCCCCCCCCCCCCceeeCC--CCCCccCcccCCcCCCCcccCCCCCCceecCCchh
Q 002860 581 ELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 642 (873)
Q Consensus 581 ~~~~C~iC~~~d~~~sg~~~g~LL~CD--qC~rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~~ 642 (873)
-+++|.+|.+- .|-.++.|+.|| .|.-+.|..|.. +.++|.|.||| ..|..
T Consensus 4 MVGGCCVCSDE----rGWaeNPLVYCDG~nCsVAVHQaCYG------IvqVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 4 MVGGCCVCSDE----RGWAENPLVYCDGHNCSVAVHQACYG------IVQVPTGPWFC-RKCES 56 (900)
T ss_pred cccceeeecCc----CCCccCceeeecCCCceeeeehhcce------eEecCCCchhh-hhhhh
Confidence 46889999863 345688999999 699999999995 46899999999 99953
No 98
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=95.26 E-value=0.023 Score=48.16 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=39.0
Q ss_pred eeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCc
Q 002860 771 VATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 820 (873)
Q Consensus 771 vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF 820 (873)
++++++|||+|+|+.|++.+++.+...|+. ....+..+|.. +||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~~-~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYEK-NGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHHh-cCC
Confidence 999999999999999999999999998877 55566778888 888
No 99
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=95.16 E-value=0.11 Score=51.08 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=65.8
Q ss_pred cCcEEEEEeeCC--eEEEEEEEEEeC----CceeeeeeeeeccCCcCCChhHHHHHHHHHHhhh-cCceEEEecchhh--
Q 002860 739 GGMYCAILTVNS--SVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAEE-- 809 (873)
Q Consensus 739 ~gfy~~vL~~~~--~vVsaA~lri~g----~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~-lgV~~lvlpA~~~-- 809 (873)
.+.|.+.+..++ ++||...+..+. .+.+|+-..- .+.|+|+|++...+.++.+.+-. ++++++++-....
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 356666666554 999999988655 5677777666 89999999999998888887555 9999888765543
Q ss_pred -HHHHhHhccCcEEcCHHH
Q 002860 810 -AESIWTDKFGFKKIDPEL 827 (873)
Q Consensus 810 -a~~~w~~~fGF~~i~~~~ 827 (873)
+...+.+ +||+..+...
T Consensus 143 ~S~rv~ek-~Gf~~eg~~~ 160 (187)
T COG1670 143 ASIRVYEK-LGFRLEGELR 160 (187)
T ss_pred HHHHHHHH-cCChhhhhhh
Confidence 4556666 9999777543
No 100
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.90 E-value=0.0071 Score=78.60 Aligned_cols=61 Identities=31% Similarity=0.729 Sum_probs=48.6
Q ss_pred ccCCceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCCCCceecCCchhhHhHHHHhh
Q 002860 580 AELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVLQNLL 651 (873)
Q Consensus 580 ~~~~~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~~I~~~LqkLv 651 (873)
.....|.+|...+ ....++.|+.|.++||..|++| .+..+|.++|+| +.|..-+.......
T Consensus 1106 ~~~~~c~~cr~k~------~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C-~~c~~e~~~rr~~~ 1166 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKK------QDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMC-PSCRKEHRARRQKR 1166 (1404)
T ss_pred cchhhhhhhhhcc------cchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccC-Cccchhhhhhhhhh
Confidence 3446799998753 5678999999999999999997 578899999999 89987665333333
No 101
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=94.78 E-value=0.014 Score=67.51 Aligned_cols=49 Identities=29% Similarity=0.813 Sum_probs=38.9
Q ss_pred ccccCCCCCCCCcccccCCCCceEeccCCCCccccccCC------CCCCCCCCccccccccc
Q 002860 484 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS------LSSIPQGDWYCKYCQNM 539 (873)
Q Consensus 484 ~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~------L~~vP~g~W~C~~C~~~ 539 (873)
.|.+|....++ .+.+||.|++|...||+.|.. +-.-+.+.|||..|...
T Consensus 170 qc~vC~~g~~~-------~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 170 QCSVCYCGGPG-------AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeeeeecCCcC-------ccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 38888866555 456999999999999999995 22336788999999863
No 102
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=94.75 E-value=0.077 Score=54.88 Aligned_cols=78 Identities=22% Similarity=0.272 Sum_probs=58.1
Q ss_pred eeCC-eEEEEEEEEE---eCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEe---cchhhHHHHhHhccC
Q 002860 747 TVNS-SVVSAGILRV---FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL---PAAEEAESIWTDKFG 819 (873)
Q Consensus 747 ~~~~-~vVsaA~lri---~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvl---pA~~~a~~~w~~~fG 819 (873)
..++ ++||-+.+|. +|..++=.-=|-+.+.|||+|+|+.|++.+|.++...+.+.++| ..-..|.+||.+ +|
T Consensus 98 ~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~~-~g 176 (202)
T KOG2488|consen 98 WNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYHR-LG 176 (202)
T ss_pred EcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHHH-cC
Confidence 3443 8888898886 23334433334456789999999999999999988887775554 455568999999 99
Q ss_pred cEEcCH
Q 002860 820 FKKIDP 825 (873)
Q Consensus 820 F~~i~~ 825 (873)
|-+...
T Consensus 177 f~~~~~ 182 (202)
T KOG2488|consen 177 FVVDEE 182 (202)
T ss_pred cccCCC
Confidence 987765
No 103
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=94.75 E-value=0.039 Score=61.75 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=65.5
Q ss_pred CceecCcEEEEEeeCCeEEEEEEEEEe------CC---ceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEec
Q 002860 735 GQEFGGMYCAILTVNSSVVSAGILRVF------GQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP 805 (873)
Q Consensus 735 ~~~f~gfy~~vL~~~~~vVsaA~lri~------g~---~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlp 805 (873)
.+++.++| |++.|.+++ ++|++. |. ..|-|-.||+.|+|||+|+-|+|+....+....-|+.-.+|.
T Consensus 35 il~~~n~~--vi~~nqkl~--s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~ 110 (389)
T COG4552 35 ILAEPNSY--VIYMNQKLA--SRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALH 110 (389)
T ss_pred hccCCcce--EEeehhhhh--hcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEec
Confidence 45666777 557777764 455554 33 356788899999999999999999999999999999987776
Q ss_pred chhhHHHHhHhccCcEEcCH
Q 002860 806 AAEEAESIWTDKFGFKKIDP 825 (873)
Q Consensus 806 A~~~a~~~w~~~fGF~~i~~ 825 (873)
+. ..+||.+ |||..-+.
T Consensus 111 P~--s~~iYrK-fGye~asn 127 (389)
T COG4552 111 PF--SGGIYRK-FGYEYASN 127 (389)
T ss_pred cC--chhhHhh-ccccccce
Confidence 55 3679998 99987665
No 104
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=94.73 E-value=0.073 Score=49.92 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=54.5
Q ss_pred cCcEEEEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceE
Q 002860 739 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS 801 (873)
Q Consensus 739 ~gfy~~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~ 801 (873)
+++| ++..+|+.++.++..-.|.+..-|.---|.+++||||+++.|++.....++..|.+-
T Consensus 15 ~~~y--~~~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~ki 75 (99)
T COG2388 15 NGRY--VLTDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKI 75 (99)
T ss_pred ceEE--EEecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeE
Confidence 4577 458889899999988889899999999999999999999999999999999998753
No 105
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=93.76 E-value=0.016 Score=75.52 Aligned_cols=52 Identities=35% Similarity=0.905 Sum_probs=43.9
Q ss_pred cCCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCC--CCCCCCCCccccccccc
Q 002860 479 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 539 (873)
Q Consensus 479 ~~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~--L~~vP~g~W~C~~C~~~ 539 (873)
....+.|.+|.... +...|+.|+.|...||..|+. +..+|.|+|+|+.|+..
T Consensus 1105 s~~~~~c~~cr~k~---------~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKK---------QDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred ccchhhhhhhhhcc---------cchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 35568899999642 234899999999999999996 78999999999999865
No 106
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=93.12 E-value=0.097 Score=54.39 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=50.4
Q ss_pred eeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcC-ceEEEecc---hhhHHHHhHhccCcEEcCHH
Q 002860 765 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPA---AEEAESIWTDKFGFKKIDPE 826 (873)
Q Consensus 765 ~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lg-V~~lvlpA---~~~a~~~w~~~fGF~~i~~~ 826 (873)
+.-|-.++|.+.||..|+|+.|++.+.+.....+ ++++.+.+ ...|..||++ +||+.+..-
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~-~gF~~~~~~ 153 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEK-RGFEIVERL 153 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHh-cCceEeecc
Confidence 5668899999999999999999999999988888 66555543 4467778887 999988763
No 107
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=92.88 E-value=0.048 Score=65.41 Aligned_cols=49 Identities=31% Similarity=0.817 Sum_probs=41.4
Q ss_pred CCceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCCCCceecCCch
Q 002860 582 LSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 641 (873)
Q Consensus 582 ~~~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~ 641 (873)
...|.+|...| +.....|++||.|....|..|.. +.++|++.|.| ..|.
T Consensus 271 dviCDvCrspD----~e~~neMVfCd~Cn~cVHqaCyG------Ile~p~gpWlC-r~Ca 319 (893)
T KOG0954|consen 271 DVICDVCRSPD----SEEANEMVFCDKCNICVHQACYG------ILEVPEGPWLC-RTCA 319 (893)
T ss_pred cceeceecCCC----ccccceeEEeccchhHHHHhhhc------eeecCCCCeee-hhcc
Confidence 34599999775 23578899999999999999995 56889999999 8885
No 108
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=92.85 E-value=0.5 Score=48.97 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=60.2
Q ss_pred cEEEEEeeCCeEEEEEEEEEeC-------CceeeeeeeeeccCCcCCChhHHHHHHHH-HHhhhcCceEEEecchhhHHH
Q 002860 741 MYCAILTVNSSVVSAGILRVFG-------QEVAELPLVATSKINHGKGYFQLLFACIE-KLLSFLRVKSIVLPAAEEAES 812 (873)
Q Consensus 741 fy~~vL~~~~~vVsaA~lri~g-------~~~AEip~vAt~~~~r~qG~gr~L~~~iE-~~l~~lgV~~lvlpA~~~a~~ 812 (873)
+|.++++-.+++|++..+-.+. ..+--+.+.=+.|+|||+|+++ |+..+. +.+.. .-...++.+...+..
T Consensus 47 l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~-~~~N~~~~~~~~~~~ 124 (181)
T PF06852_consen 47 LVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDS-VDDNSVAQGNVKMSN 124 (181)
T ss_pred EEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhcc-CCCceeeecCHHHHH
Confidence 4555556667788877765433 2377777777999999999996 555454 44444 345567778889999
Q ss_pred HhHhccCcEEcCH
Q 002860 813 IWTDKFGFKKIDP 825 (873)
Q Consensus 813 ~w~~~fGF~~i~~ 825 (873)
+|.+-|||..++.
T Consensus 125 ~w~k~~G~~~~~h 137 (181)
T PF06852_consen 125 FWHKMFGFDDYGH 137 (181)
T ss_pred HHHHHhCCCCCcc
Confidence 9999999988887
No 109
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=92.58 E-value=0.15 Score=51.33 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=46.4
Q ss_pred ceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCc---eEEEecchhhHHHHhHhccCcEE
Q 002860 764 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRV---KSIVLPAAEEAESIWTDKFGFKK 822 (873)
Q Consensus 764 ~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV---~~lvlpA~~~a~~~w~~~fGF~~ 822 (873)
.-+++--+++.|+||++|++..||+.||+.....+. .-+|.-.-.-|..+|++ |||.+
T Consensus 68 wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkk-LGY~~ 128 (173)
T KOG3234|consen 68 WHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKK-LGYSV 128 (173)
T ss_pred eeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHh-cCceE
Confidence 346788899999999999999999999999877653 33343444569999999 99985
No 110
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=92.45 E-value=0.11 Score=60.14 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=45.5
Q ss_pred ccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEEcCH
Q 002860 774 SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 825 (873)
Q Consensus 774 ~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~i~~ 825 (873)
...+|.+|||+.||+..|+.+++.|.+++.+-+..-+..-|.+ |||...+.
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k-~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRK-LGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHH-hCccccCC
Confidence 4689999999999999999999999999888888888888886 99987654
No 111
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=92.12 E-value=0.059 Score=62.00 Aligned_cols=48 Identities=31% Similarity=0.738 Sum_probs=37.7
Q ss_pred CceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCCCCceecCCch
Q 002860 583 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 641 (873)
Q Consensus 583 ~~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~ 641 (873)
+.|.+|...+. .+.++++.||.|+-+.|..|..- .-+|+|.|+| ..|-
T Consensus 194 ~~C~~c~~t~~----eN~naiVfCdgC~i~VHq~CYGI------~f~peG~WlC-rkCi 241 (669)
T COG5141 194 DICTKCTSTHN----ENSNAIVFCDGCEICVHQSCYGI------QFLPEGFWLC-RKCI 241 (669)
T ss_pred hhhHhcccccc----CCcceEEEecCcchhhhhhcccc------eecCcchhhh-hhhc
Confidence 34888876542 24578999999999999999963 5678999999 7774
No 112
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=91.54 E-value=0.033 Score=42.79 Aligned_cols=33 Identities=36% Similarity=1.075 Sum_probs=17.9
Q ss_pred CceeeCCCCCCccCcccCCcCCCCcccCCCCC-CceecCCc
Q 002860 601 RTILLCDQCEREFHVGCLKKHKMADLRELPKG-KWFCCMDC 640 (873)
Q Consensus 601 g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g-~WfC~~~C 640 (873)
+.||.|+.|.-..|..|..- ...|.+ .|+| .-|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv------~~~~~~~~W~C-~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGV------SEVPDGDDWLC-DRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-------SS--SS------HHH
T ss_pred CceEEeCCCCCcCChhhCCc------ccCCCCCcEEC-CcC
Confidence 46999999999999999964 334444 7999 655
No 113
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=90.70 E-value=1.3 Score=41.82 Aligned_cols=66 Identities=6% Similarity=-0.200 Sum_probs=56.2
Q ss_pred cEEEEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecch
Q 002860 741 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA 807 (873)
Q Consensus 741 fy~~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~ 807 (873)
...++++.+|++||++..-.. .+.+..-..+++++|+..+.|..|+..+.+.+...|++.+-+-..
T Consensus 71 ~~l~~~~~~g~~va~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALGFRH-GGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred EEEEEEEECCEEEEEEEEEEE-CCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 444677889999999876554 468889999999999999999999999999999999988876554
No 114
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=90.65 E-value=0.68 Score=46.88 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=60.8
Q ss_pred EEe-eCCeEEEEEEEEEeC-----CceeeeeeeeeccCCcCCChhHHHHHHHHHH-hhhcCceEEEecch---hhHHHHh
Q 002860 745 ILT-VNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKL-LSFLRVKSIVLPAA---EEAESIW 814 (873)
Q Consensus 745 vL~-~~~~vVsaA~lri~g-----~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~-l~~lgV~~lvlpA~---~~a~~~w 814 (873)
|.+ .+|.|||-.....+. ..-.+|-.+||...||+.|+++.||..-.+. +...+.+.+-|... ..|...|
T Consensus 45 VA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY 124 (193)
T KOG3235|consen 45 VAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLY 124 (193)
T ss_pred EEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhh
Confidence 445 578999987776655 1246788999999999999999999875553 44445556666544 4589999
Q ss_pred HhccCcEEcCH
Q 002860 815 TDKFGFKKIDP 825 (873)
Q Consensus 815 ~~~fGF~~i~~ 825 (873)
++.+||.+.+-
T Consensus 125 ~~tl~F~v~ev 135 (193)
T KOG3235|consen 125 KNTLGFVVCEV 135 (193)
T ss_pred hhccceEEeec
Confidence 99999998765
No 115
>smart00258 SAND SAND domain.
Probab=90.52 E-value=0.22 Score=44.17 Aligned_cols=50 Identities=24% Similarity=0.362 Sum_probs=38.9
Q ss_pred ecCeeeecCCCCCCceeeCcchhhhhccc-cccCccccccccCCccHHHHHHH
Q 002860 260 RDGGILCSCSLCNGCRVIPPSKFEIHACK-QYRRASQYICFENGKSLLEVLRA 311 (873)
Q Consensus 260 ~~~Gi~C~C~~c~~~~v~s~s~FE~HAg~-~~~~p~~~I~lenG~sL~~~~~~ 311 (873)
...|+.+.|-.+++ +-+||++||.|||. +++.=-..|.. +|.+|+.+++.
T Consensus 19 f~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~~ 69 (73)
T smart00258 19 FKCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLMEN 69 (73)
T ss_pred hhcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHHc
Confidence 34599999999888 99999999999995 45554455544 68899877764
No 116
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=89.60 E-value=1.8 Score=46.73 Aligned_cols=81 Identities=16% Similarity=0.104 Sum_probs=62.6
Q ss_pred CcEEEEEe-eCCeEEEEEEEEEe------------------------------CCceeeeeeeeeccCCcCC--------
Q 002860 740 GMYCAILT-VNSSVVSAGILRVF------------------------------GQEVAELPLVATSKINHGK-------- 780 (873)
Q Consensus 740 gfy~~vL~-~~~~vVsaA~lri~------------------------------g~~~AEip~vAt~~~~r~q-------- 780 (873)
.-|.++.. .++++||+++|... ..+++|+-++|+.++||+.
T Consensus 55 ~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~ 134 (241)
T TIGR03694 55 SVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPS 134 (241)
T ss_pred CcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccc
Confidence 34534443 35899999998642 1369999999999999974
Q ss_pred C--------------------hhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcE
Q 002860 781 G--------------------YFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFK 821 (873)
Q Consensus 781 G--------------------~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~ 821 (873)
| +...|+.++-+.+...|+++++.-+......++.+ +||.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~r-~G~~ 194 (241)
T TIGR03694 135 GVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLLSR-FGIQ 194 (241)
T ss_pred cccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHH-hCCc
Confidence 2 34679999999999999999998888877777765 8864
No 117
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=86.03 E-value=0.31 Score=44.23 Aligned_cols=55 Identities=27% Similarity=0.470 Sum_probs=37.5
Q ss_pred eeEEEe-----cCeeeecCCCCCCceeeCcchhhhhccccc-cCccccccccCCccHHHHHHH
Q 002860 255 LRGIIR-----DGGILCSCSLCNGCRVIPPSKFEIHACKQY-RRASQYICFENGKSLLEVLRA 311 (873)
Q Consensus 255 l~G~i~-----~~Gi~C~C~~c~~~~v~s~s~FE~HAg~~~-~~p~~~I~lenG~sL~~~~~~ 311 (873)
..|+.. ..|+...|-.++ .+-+||++||.|||..+ ++=-..|.. +|.+|..++.+
T Consensus 18 ~~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 18 VKGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp EEEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred eEEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 356555 345556676677 58999999999999744 444556777 89999977653
No 118
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=86.01 E-value=1.4 Score=45.17 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=52.2
Q ss_pred cEEEEEeeCCeEEEEEEEEEeCCceeeee-----eeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhh
Q 002860 741 MYCAILTVNSSVVSAGILRVFGQEVAELP-----LVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE 809 (873)
Q Consensus 741 fy~~vL~~~~~vVsaA~lri~g~~~AEip-----~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~ 809 (873)
.|-++-+ ++++||.-.+|-.=.+ ..++ --+|+|+.||+||++.++.-..+.++.+|+..+.+-+..+
T Consensus 70 ~y~~v~~-d~~ivG~i~lRh~Ln~-~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~d 141 (174)
T COG3981 70 TYWAVDE-DGQIVGFINLRHQLND-FLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKD 141 (174)
T ss_pred eEEEEec-CCcEEEEEEeeeecch-HHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 5545555 8999999999864322 1222 2458999999999999999999999999999988877643
No 119
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=84.42 E-value=5.1 Score=41.52 Aligned_cols=81 Identities=16% Similarity=0.077 Sum_probs=61.4
Q ss_pred CcEEEEEeeCCeEEEEEEEEEeC---------------------CceeeeeeeeeccCCcC------CChhHHHHHHHHH
Q 002860 740 GMYCAILTVNSSVVSAGILRVFG---------------------QEVAELPLVATSKINHG------KGYFQLLFACIEK 792 (873)
Q Consensus 740 gfy~~vL~~~~~vVsaA~lri~g---------------------~~~AEip~vAt~~~~r~------qG~gr~L~~~iE~ 792 (873)
-.|.++ ..+|+++|+++|.... .+++|+=+++++++.++ .-+...|+.++-+
T Consensus 45 ~~ylv~-~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e 123 (182)
T PF00765_consen 45 AVYLVA-LDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVE 123 (182)
T ss_dssp -EEEEE-EETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHH
T ss_pred CeEEEE-EECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHH
Confidence 367554 4569999999987543 58999999999987432 2356889999999
Q ss_pred HhhhcCceEEEecchhhHHHHhHhccCcEE
Q 002860 793 LLSFLRVKSIVLPAAEEAESIWTDKFGFKK 822 (873)
Q Consensus 793 ~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~ 822 (873)
.+...|++.++.-+....+.++.+ +||..
T Consensus 124 ~a~~~gi~~~v~V~~~~~~r~l~r-~G~~~ 152 (182)
T PF00765_consen 124 FALSNGIRHIVGVVDPAMERILRR-AGWPV 152 (182)
T ss_dssp HHHCTT-SEEEEEEEHHHHHHHHH-CT-EE
T ss_pred HHHHCCCCEEEEEEChHHHHHHHH-cCCce
Confidence 999999999998888777888887 99874
No 120
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=83.79 E-value=5.9 Score=41.89 Aligned_cols=119 Identities=18% Similarity=0.104 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhhcCCCcccCCcCCCcchhhhhcccCCCcee-cCcEEEEEeeCCeEEEEEEEEEe--------------
Q 002860 697 RLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEF-GGMYCAILTVNSSVVSAGILRVF-------------- 761 (873)
Q Consensus 697 ~~~L~~Al~If~EcF~Piid~~TgrDLIp~mvy~~~~~~~~f-~gfy~~vL~~~~~vVsaA~lri~-------------- 761 (873)
...+.++...=|+.|. +. -|=++ +. --+.+.-..|. .-.|.+.+..++++||+++|--.
T Consensus 15 ~~~l~~~~rLR~~VF~---~e-lgW~~-~~-~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~ 88 (207)
T PRK13834 15 ASLLKQMHRLRARVFG---GR-LGWDV-SI-TDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLL 88 (207)
T ss_pred HHHHHHHHHHHHHHhc---cc-cCCCC-CC-CCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhc
Confidence 3456777777677772 11 11121 10 01222222332 23565555567899999987321
Q ss_pred -------CCceeeeeeeeeccCCc---CCC----hhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhccCcEE
Q 002860 762 -------GQEVAELPLVATSKINH---GKG----YFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 822 (873)
Q Consensus 762 -------g~~~AEip~vAt~~~~r---~qG----~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~fGF~~ 822 (873)
..+++|+-+++++++++ +.+ +...|+..+-+.+...|++.++.-.......++.+ +||..
T Consensus 89 ~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r-~G~~~ 162 (207)
T PRK13834 89 PAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILAR-AGWPM 162 (207)
T ss_pred CCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH-cCCCe
Confidence 15799999999999753 222 45789999999999999999987777666676755 88653
No 121
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=83.18 E-value=2.4 Score=39.83 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=41.5
Q ss_pred eeCCeEEEEEEEEEeC--CceeeeeeeeeccCCcCCChhHHHHHHHHHHhh
Q 002860 747 TVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS 795 (873)
Q Consensus 747 ~~~~~vVsaA~lri~g--~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~ 795 (873)
+.++...++|.+..-+ .+++-|-.+|+.+..||+|+++.|+++|-+...
T Consensus 14 y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~~ 64 (99)
T cd04264 14 YLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDFP 64 (99)
T ss_pred EEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhCC
Confidence 5666677888886644 589999999999999999999999999988743
No 122
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=83.01 E-value=0.55 Score=42.93 Aligned_cols=59 Identities=19% Similarity=0.358 Sum_probs=35.8
Q ss_pred CCcccccCCCCCCCCc--ccccCCCCceEeccCCCCccccccCC-CCCCCCCCcccccccccc
Q 002860 481 LGIICHCCNSEVSPSQ--FEAHADGGNLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNMF 540 (873)
Q Consensus 481 ~~i~C~~C~~~~SpS~--FE~hadgG~Ll~Cd~C~~afH~~CL~-L~~vP~g~W~C~~C~~~~ 540 (873)
+++.|.+|...+.... ...-.|.-.++.+. |...||..|+- ..+-....-.||.||..+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeecc-CccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 4788999997654211 11111222455444 99999999994 212223356999999754
No 123
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=82.47 E-value=0.97 Score=37.94 Aligned_cols=34 Identities=26% Similarity=0.792 Sum_probs=29.9
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccC
Q 002860 480 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECA 521 (873)
Q Consensus 480 ~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL 521 (873)
..+-.|.+|++.+. ++++++.|..|...||..|.
T Consensus 3 ~~~~~C~~Cg~~~~--------~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 3 YEGCKCPVCGKKFK--------DGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred ccCccChhhCCccc--------CCCCEEECCCCCCcccHHHH
Confidence 35678999999887 48899999999999999998
No 124
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=81.51 E-value=1.3 Score=53.85 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=23.9
Q ss_pred eeeeeeeeccCCcCCChhHHHHHHHHH
Q 002860 766 AELPLVATSKINHGKGYFQLLFACIEK 792 (873)
Q Consensus 766 AEip~vAt~~~~r~qG~gr~L~~~iE~ 792 (873)
|.|-+|||+|+|++-|||.+-++-|.+
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~ 641 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTD 641 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHH
Confidence 678899999999999999888877766
No 125
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=80.51 E-value=0.3 Score=55.81 Aligned_cols=47 Identities=21% Similarity=0.459 Sum_probs=26.7
Q ss_pred hhcccccccC-CceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcC
Q 002860 573 RIVKNLEAEL-SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKH 621 (873)
Q Consensus 573 R~~k~~~~~~-~~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~ 621 (873)
.++.+++... -.|.+|+..-....|.++ .+.=-.=++.||++|.+..
T Consensus 384 ~Cv~dfh~kfAPrCs~C~~PI~P~~G~~e--tvRvvamdr~fHv~CY~CE 431 (468)
T KOG1701|consen 384 YCVPDFHKKFAPRCSVCGNPILPRDGKDE--TVRVVAMDRDFHVNCYKCE 431 (468)
T ss_pred eeehhhhhhcCcchhhccCCccCCCCCcc--eEEEEEccccccccceehh
Confidence 3444444433 349999987655444322 2222234688999998653
No 126
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=79.53 E-value=1.9 Score=50.16 Aligned_cols=56 Identities=21% Similarity=0.581 Sum_probs=37.9
Q ss_pred eeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCC---c-ccC---CCCCCceecCCchhhH
Q 002860 585 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMA---D-LRE---LPKGKWFCCMDCSRIN 644 (873)
Q Consensus 585 C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~---~-L~e---~P~g~WfC~~~C~~I~ 644 (873)
|.+|.+.|++. ++-.+|.||.|..|-|.+|.=...+. + ... ..+..|+| ..|.+..
T Consensus 131 C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C-~~C~~~s 193 (446)
T PF07227_consen 131 CCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHC-RACGKTS 193 (446)
T ss_pred ccccCCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEc-cCCCChh
Confidence 88998877653 45679999999999999995333221 1 111 12457888 9997543
No 127
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=78.96 E-value=2.8 Score=47.09 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=48.7
Q ss_pred EEEEEEeCCceeeeeeeeecc-CCcCCChhHHHHHHHHHHhhhcCc-eEEEecchhhHHHHhHhccCcEEcCH
Q 002860 755 AGILRVFGQEVAELPLVATSK-INHGKGYFQLLFACIEKLLSFLRV-KSIVLPAAEEAESIWTDKFGFKKIDP 825 (873)
Q Consensus 755 aA~lri~g~~~AEip~vAt~~-~~r~qG~gr~L~~~iE~~l~~lgV-~~lvlpA~~~a~~~w~~~fGF~~i~~ 825 (873)
+--|||+|. -+|.-+-++ .||.||||..||+..|+.+++.+= ..+-+-+.....+.|.+ |||..-+.
T Consensus 479 vRELHVYGs---~vpv~~rDp~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~k-lGY~LdGP 547 (554)
T KOG2535|consen 479 VRELHVYGS---VVPVHSRDPTKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRK-LGYELDGP 547 (554)
T ss_pred heeeeecce---eeecccCCchhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHh-hCeeecCh
Confidence 344677774 345555566 799999999999999999998753 35555555566677777 99987665
No 128
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=77.34 E-value=1.2 Score=56.21 Aligned_cols=44 Identities=27% Similarity=0.755 Sum_probs=39.0
Q ss_pred ceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCCCCceecCCch
Q 002860 584 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 641 (873)
Q Consensus 584 ~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~ 641 (873)
.|-+|.+ .+.+++|..|++-||..|..+ |+.+.|...|-| .-|.
T Consensus 346 hcrf~~d---------~~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 346 HCRFCHD---------LGDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred cccccCc---------ccceeecccCCceEEeeecCC----ccccCCCccchh-hhhh
Confidence 4999984 678999999999999999986 678899999999 8885
No 129
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=75.80 E-value=4 Score=45.25 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=27.5
Q ss_pred eeeecCCCCCCceeeCcchhhhhccccc-cCccccc
Q 002860 263 GILCSCSLCNGCRVIPPSKFEIHACKQY-RRASQYI 297 (873)
Q Consensus 263 Gi~C~C~~c~~~~v~s~s~FE~HAg~~~-~~p~~~I 297 (873)
-|+|-|.- .-+||.+|=.|||... -||-.||
T Consensus 252 ~i~c~chg----~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 252 RIVCVCHG----SFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEEecC----CCCCHHHHHHhcCCCCcCCchhcc
Confidence 38999998 8899999999999844 8999998
No 130
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=75.27 E-value=0.69 Score=40.86 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=32.3
Q ss_pred CcccccCCCCCCCCcccccCCCC-ceEeccCCCCccccccCCCCCCCCCCccccccc
Q 002860 482 GIICHCCNSEVSPSQFEAHADGG-NLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQ 537 (873)
Q Consensus 482 ~i~C~~C~~~~SpS~FE~hadgG-~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~ 537 (873)
.+.|.+|...+.....+..+++. -.+.=..|+..||..|+. ++-.....||.|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~--~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCIS--QWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHH--HHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHH--HHHhcCCcCCCCC
Confidence 44599999887443333333332 233334599999999994 2223344899885
No 131
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=75.11 E-value=1.9 Score=36.21 Aligned_cols=34 Identities=24% Similarity=0.580 Sum_probs=27.8
Q ss_pred ceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCC
Q 002860 584 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 622 (873)
Q Consensus 584 ~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~ 622 (873)
.|.+|++.. .+++.++.|..|...||..|....+
T Consensus 7 ~C~~Cg~~~-----~~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 7 KCPVCGKKF-----KDGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred cChhhCCcc-----cCCCCEEECCCCCCcccHHHHhhCC
Confidence 499999753 2478899999999999999986543
No 132
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=72.54 E-value=1.6 Score=40.98 Aligned_cols=32 Identities=25% Similarity=0.679 Sum_probs=27.2
Q ss_pred CceeeccCCCCCCCCCCCCceeeCCC--CCCccCcccCCcCC
Q 002860 583 SGCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 622 (873)
Q Consensus 583 ~~C~iC~~~d~~~sg~~~g~LL~CDq--C~rafHv~CL~p~~ 622 (873)
..|.+|+.. .|..+.|.. |.++||+.|....+
T Consensus 56 ~~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 56 LKCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred CcCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCC
Confidence 459999964 578999998 99999999997655
No 133
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=71.92 E-value=9.2 Score=37.84 Aligned_cols=54 Identities=13% Similarity=0.260 Sum_probs=42.7
Q ss_pred cCCcCCChhHHHHHHHHHHhhhcCceEEEec----chhhHHHHhHhccCcEEcCHHHH
Q 002860 775 KINHGKGYFQLLFACIEKLLSFLRVKSIVLP----AAEEAESIWTDKFGFKKIDPELL 828 (873)
Q Consensus 775 ~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlp----A~~~a~~~w~~~fGF~~i~~~~~ 828 (873)
...||.|.+|+|.+.+-..+..-|-.+++|- -...|...+...|||+++++.++
T Consensus 94 ~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~i 151 (167)
T COG3818 94 SRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATI 151 (167)
T ss_pred ecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEE
Confidence 3468999999999999999988888888773 23355666777799999998543
No 134
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=71.55 E-value=5.7 Score=40.92 Aligned_cols=51 Identities=20% Similarity=0.050 Sum_probs=43.1
Q ss_pred eeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHh
Q 002860 765 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTD 816 (873)
Q Consensus 765 ~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~ 816 (873)
+||+.+.|++|+.+|.|+++.+ ..+--.|+.|||.--|--......+.+++
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R 135 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVER 135 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHH
Confidence 7999999999999999999976 58888999999997776666666666666
No 135
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=71.16 E-value=15 Score=35.88 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=56.5
Q ss_pred EEeeCCeEEEEEEEE--EeC-----CceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhc
Q 002860 745 ILTVNSSVVSAGILR--VFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDK 817 (873)
Q Consensus 745 vL~~~~~vVsaA~lr--i~g-----~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~ 817 (873)
.+..+|.+||-+.+- ++. -.++|+= +...|||+||||+....|-.+..-+ -+-.+++--..|.++|++
T Consensus 41 ~~~~~~~~igf~l~L~~~~~~~~iD~~~~efF---Ii~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK~- 115 (143)
T COG5628 41 LFRIGGLPVGFALVLDLAHSPTPIDRAVAEFF---IVRKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWKR- 115 (143)
T ss_pred EEEECCceeeeeeeecccCCCCcccccchheE---eeehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHHh-
Confidence 446788899988652 111 2344443 4457999999999999999997666 667888888999999999
Q ss_pred cCcE-EcCHHHHHH
Q 002860 818 FGFK-KIDPELLSI 830 (873)
Q Consensus 818 fGF~-~i~~~~~~~ 830 (873)
+-+. .+..++.+.
T Consensus 116 ~~~t~~i~~E~r~d 129 (143)
T COG5628 116 VAETYPVVEEDRQD 129 (143)
T ss_pred hhcccccchhhhhc
Confidence 5333 333344333
No 136
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=70.85 E-value=7.8 Score=36.51 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=37.8
Q ss_pred eeCCeEEEEEEEEEeC-CceeeeeeeeeccCCcCCChhHHHHHHHHHHhh
Q 002860 747 TVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLS 795 (873)
Q Consensus 747 ~~~~~vVsaA~lri~g-~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~ 795 (873)
+.++..=++|.+..-. .+++-|-.+|+.+..||+|+++.|+.+|-+...
T Consensus 15 y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~~ 64 (99)
T cd04265 15 YLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDFP 64 (99)
T ss_pred EEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhCC
Confidence 3334344666665433 479999999999999999999999999988854
No 137
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=70.30 E-value=4.6 Score=44.96 Aligned_cols=102 Identities=17% Similarity=0.278 Sum_probs=57.4
Q ss_pred CCCceEeccCCCCccccccCCCCCCCCCCccccccccccchhhcccccccccccCccccccchhhhhhhhhhhccccccc
Q 002860 502 DGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAE 581 (873)
Q Consensus 502 dgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~~~~~ek~v~~n~~~va~gr~~gvd~ie~i~~rc~R~~k~~~~~ 581 (873)
+++....|-.|.-++|-.-..+.-+-.+.+.|--|...+.+-.+- ....+-.+++.+ .+..+
T Consensus 64 ~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc~-----l~~~~~~~n~~N-------------~YNhN 125 (345)
T KOG2752|consen 64 APEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSCN-----LLEDKDAENSEN-------------LYNHN 125 (345)
T ss_pred ChhhceeEEEeeeeecCCceeeeccccCCcccccccccccccccc-----cccccccccchh-------------hhhhh
Confidence 455788899999888887776666666788887665544322110 000000000000 01112
Q ss_pred CCc-eeeccCCCCCCCCCCCCceeeCCCCCCccC-cccCCcC
Q 002860 582 LSG-CLLCRGCDFSKSGFGPRTILLCDQCEREFH-VGCLKKH 621 (873)
Q Consensus 582 ~~~-C~iC~~~d~~~sg~~~g~LL~CDqC~rafH-v~CL~p~ 621 (873)
..+ =..|...+.......++.|++|-.|+-||| -+|++..
T Consensus 126 fqG~~C~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 126 FQGLFCKCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred hcceeEEecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 111 124554433322235789999999999999 8898764
No 138
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=68.02 E-value=0.41 Score=37.68 Aligned_cols=43 Identities=23% Similarity=0.615 Sum_probs=26.8
Q ss_pred ccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCccccccc
Q 002860 484 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQ 537 (873)
Q Consensus 484 ~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~ 537 (873)
.|.+|...+.. +..++... |+..||..|+. .+-.....||.|+
T Consensus 2 ~C~IC~~~~~~--------~~~~~~l~-C~H~fh~~Ci~--~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED--------GEKVVKLP-CGHVFHRSCIK--EWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT--------TSCEEEET-TSEEEEHHHHH--HHHHHSSB-TTTH
T ss_pred CCcCCChhhcC--------CCeEEEcc-CCCeeCHHHHH--HHHHhCCcCCccC
Confidence 58889876542 34455444 99999999994 1111123888885
No 139
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=66.55 E-value=2.4 Score=38.28 Aligned_cols=32 Identities=31% Similarity=0.766 Sum_probs=26.2
Q ss_pred CceeeccCCCCCCCCCCCCceeeCCC--CCCccCcccCCcCC
Q 002860 583 SGCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 622 (873)
Q Consensus 583 ~~C~iC~~~d~~~sg~~~g~LL~CDq--C~rafHv~CL~p~~ 622 (873)
..|.+|+.. .|..|.|.. |.+.||+.|....+
T Consensus 37 ~~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 37 LKCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred CCCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCC
Confidence 359999963 368999986 99999999987654
No 140
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=65.91 E-value=3.8 Score=35.97 Aligned_cols=53 Identities=23% Similarity=0.387 Sum_probs=19.3
Q ss_pred CcccccCCCCCCCCcccccCCCCceEecc--CCCCccccccCC--C---CC----CCCCCcccccccccc
Q 002860 482 GIICHCCNSEVSPSQFEAHADGGNLLPCD--GCPRAFHKECAS--L---SS----IPQGDWYCKYCQNMF 540 (873)
Q Consensus 482 ~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd--~C~~afH~~CL~--L---~~----vP~g~W~C~~C~~~~ 540 (873)
...|.+|...... .+.-..+.|+ .|...||..||- + +. ..--.+.||.|...+
T Consensus 2 ~~~C~IC~~~~~~------~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLD------DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-T------T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecC------CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 3568999865431 1222458898 799999999993 1 11 111136799998754
No 141
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=61.46 E-value=17 Score=40.56 Aligned_cols=80 Identities=9% Similarity=0.036 Sum_probs=60.7
Q ss_pred EEEe-eCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhh--HHHHhHhccCc
Q 002860 744 AILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE--AESIWTDKFGF 820 (873)
Q Consensus 744 ~vL~-~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~--a~~~w~~~fGF 820 (873)
++++ .++++|+++.+..++ +.+.....++.+++|+.+-.-.|+-.+.+.+.+.|++.+-+-.... -.-.|++.|||
T Consensus 198 ~~a~~~~g~~va~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~ 276 (330)
T TIGR03019 198 LTVRLGDGVVASAVLSFYFR-DEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGF 276 (330)
T ss_pred EEEEeCCCCEEEEEEEEEeC-CEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCC
Confidence 3446 688888887776655 4455557889999999999999999999999999999988865432 23346677899
Q ss_pred EEcC
Q 002860 821 KKID 824 (873)
Q Consensus 821 ~~i~ 824 (873)
....
T Consensus 277 ~~~~ 280 (330)
T TIGR03019 277 EPQP 280 (330)
T ss_pred eecc
Confidence 8654
No 142
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=56.86 E-value=6 Score=40.59 Aligned_cols=35 Identities=20% Similarity=0.555 Sum_probs=26.9
Q ss_pred eeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCC
Q 002860 585 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 622 (873)
Q Consensus 585 C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~ 622 (873)
|..|...+ .+...|.||.|..|-.+||-.||.+..
T Consensus 2 C~~C~~~g---~~~~kG~Lv~CQGCs~sYHk~CLG~Rs 36 (175)
T PF15446_consen 2 CDTCGYEG---DDRNKGPLVYCQGCSSSYHKACLGPRS 36 (175)
T ss_pred cccccCCC---CCccCCCeEEcCccChHHHhhhcCCcc
Confidence 77785432 123467999999999999999998764
No 143
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=54.35 E-value=45 Score=35.03 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhcCCCcccCCcCCCcchhhhhcccCCCceecC--cEEEEEeeCCe--EEEEEEEEEeCCceeeeeeeee
Q 002860 698 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGG--MYCAILTVNSS--VVSAGILRVFGQEVAELPLVAT 773 (873)
Q Consensus 698 ~~L~~Al~If~EcF~Piid~~TgrDLIp~mvy~~~~~~~~f~g--fy~~vL~~~~~--vVsaA~lri~g~~~AEip~vAt 773 (873)
....+-|-.|-..| +|++| +| .|..+ ||++....++. +||-=+=--...+--.+--|-|
T Consensus 26 ~~yCqnLcLlaKLF---Ld~Kt--------ly------ydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~ 88 (188)
T PF01853_consen 26 KLYCQNLCLLAKLF---LDHKT--------LY------YDVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILT 88 (188)
T ss_dssp HHHHHHHHHHHHTT----SSGC--------CT------T-STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE
T ss_pred chHHHHHHHHHHHH---hhCeE--------EE------eecCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhh
Confidence 55678888888888 33322 11 12223 77544444432 2221111111122235666889
Q ss_pred ccCCcCCChhHHHHHHHHHHhhhcC
Q 002860 774 SKINHGKGYFQLLFACIEKLLSFLR 798 (873)
Q Consensus 774 ~~~~r~qG~gr~L~~~iE~~l~~lg 798 (873)
.|.||++|||+.|++.-=.+.+..|
T Consensus 89 lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 89 LPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred cchhhhcchhhhhhhhHHHHhhccC
Confidence 9999999999999987655555443
No 144
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=53.84 E-value=56 Score=32.22 Aligned_cols=61 Identities=5% Similarity=0.012 Sum_probs=50.5
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEE
Q 002860 742 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 803 (873)
Q Consensus 742 y~~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lv 803 (873)
+-+-...+|++|+||.+.+....+..|=.+= +|++...++|...+-.-.+.++.+|.+.+.
T Consensus 40 ~~~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 40 YHLEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred EEEEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 3345568999999999998887766665543 789999999999988888999999999988
No 145
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=52.84 E-value=9.8 Score=33.73 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=23.2
Q ss_pred eeeeeeccCCcCCChhHHHHHHHHHHh
Q 002860 768 LPLVATSKINHGKGYFQLLFACIEKLL 794 (873)
Q Consensus 768 ip~vAt~~~~r~qG~gr~L~~~iE~~l 794 (873)
|.++=|.+.+||+|++++|++++-...
T Consensus 8 I~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 8 ISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred eEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 566778999999999999999988763
No 146
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=49.07 E-value=35 Score=34.61 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=36.3
Q ss_pred eeeeeeeeeccCCcCCChhHHHHHHHHHHhhh-cCceEEEecc--hhh-HHHHhHhccCcEEc
Q 002860 765 VAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPA--AEE-AESIWTDKFGFKKI 823 (873)
Q Consensus 765 ~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~-lgV~~lvlpA--~~~-a~~~w~~~fGF~~i 823 (873)
++|+-..---|..||+|||+..+.++...+.+ +++.....-. +.. ...++.+ |+|.-+
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk-~~f~q~ 168 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKK-FLFTQV 168 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHH-hhheee
Confidence 35555566678999999999888888776543 3444443333 222 2334444 888754
No 147
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.10 E-value=4.6 Score=44.07 Aligned_cols=56 Identities=21% Similarity=0.407 Sum_probs=34.7
Q ss_pred CCCcccccCCCCCCCCcccccCCCCce---EeccCCCCccccccCCCCCCCCCCcccccccccc
Q 002860 480 GLGIICHCCNSEVSPSQFEAHADGGNL---LPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 540 (873)
Q Consensus 480 ~~~i~C~~C~~~~SpS~FE~hadgG~L---l~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~~~ 540 (873)
-++.+|.+|++.+..+. |.+-+ +.=-.|...||..|+.--.+-...-.||+|+.++
T Consensus 222 l~d~vCaVCg~~~~~s~-----~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSV-----DEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCcchhHhhcchheeec-----chhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 35679999998765433 22111 1112488999999994222333356899998653
No 148
>PRK00756 acyltransferase NodA; Provisional
Probab=48.03 E-value=28 Score=35.89 Aligned_cols=39 Identities=26% Similarity=0.162 Sum_probs=33.9
Q ss_pred ceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEE
Q 002860 764 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 803 (873)
Q Consensus 764 ~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lv 803 (873)
=+||+.+.|++|+..|.|+++.+ ..+--.|+.|||.--|
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~F 122 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAF 122 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeec
Confidence 38999999999999999998876 6788889999997544
No 149
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=46.41 E-value=37 Score=35.33 Aligned_cols=71 Identities=23% Similarity=0.371 Sum_probs=57.1
Q ss_pred eeCCeEEEEEEEEEeC----------------------------CceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcC
Q 002860 747 TVNSSVVSAGILRVFG----------------------------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLR 798 (873)
Q Consensus 747 ~~~~~vVsaA~lri~g----------------------------~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lg 798 (873)
..+|++++|+.+|.-. ..++||.=+|.. +.|.++.|+..|-..|...|
T Consensus 41 ~~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g 116 (179)
T PF12261_consen 41 DSDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQG 116 (179)
T ss_pred cCCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeechhhc----CcccHHHHHHHHHHHHHHCC
Confidence 4567788888777644 345666666654 58999999999999999999
Q ss_pred ceEEEecchhhHHHHhHhccCcEE
Q 002860 799 VKSIVLPAAEEAESIWTDKFGFKK 822 (873)
Q Consensus 799 V~~lvlpA~~~a~~~w~~~fGF~~ 822 (873)
.+-++.-|.........+ +|+..
T Consensus 117 ~~w~vfTaT~~lr~~~~r-lgl~~ 139 (179)
T PF12261_consen 117 FEWVVFTATRQLRNLFRR-LGLPP 139 (179)
T ss_pred CCEEEEeCCHHHHHHHHH-cCCCc
Confidence 999999999999999988 77654
No 150
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=45.88 E-value=33 Score=31.80 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=19.8
Q ss_pred CceeeeeeeeeccCCcCCChhHHH
Q 002860 763 QEVAELPLVATSKINHGKGYFQLL 786 (873)
Q Consensus 763 ~~~AEip~vAt~~~~r~qG~gr~L 786 (873)
..++||-++|+.++||+...-..|
T Consensus 76 ~~~~EisRl~V~~~~R~~~~~~~L 99 (101)
T PF13444_consen 76 RRVAEISRLCVHPEYRRRKVLLLL 99 (101)
T ss_pred CcEEEeehheECHhHCCChHHHHH
Confidence 478999999999999998775554
No 151
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=43.46 E-value=45 Score=37.19 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=25.3
Q ss_pred eeeeeeeccCCcCCChhHHHHHHHHHHhhhcC
Q 002860 767 ELPLVATSKINHGKGYFQLLFACIEKLLSFLR 798 (873)
Q Consensus 767 Eip~vAt~~~~r~qG~gr~L~~~iE~~l~~lg 798 (873)
-+--|-|.|.||++|||+.|++.-=.+.+..|
T Consensus 157 NLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 157 NLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred cEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 46678899999999999999987655555444
No 152
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.31 E-value=17 Score=41.53 Aligned_cols=47 Identities=23% Similarity=0.565 Sum_probs=32.0
Q ss_pred CcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCC--CCCCCCCCcccccccccc
Q 002860 482 GIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 540 (873)
Q Consensus 482 ~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~--L~~vP~g~W~C~~C~~~~ 540 (873)
.+.|.+|.+.+. .|+.+-==-|.+.||..|++ |.+. .-+||-|+...
T Consensus 229 ~~~CaIClEdY~---------~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di 277 (348)
T KOG4628|consen 229 TDTCAICLEDYE---------KGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDI 277 (348)
T ss_pred CceEEEeecccc---------cCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcC
Confidence 379999997654 23333334577899999997 3322 34799999754
No 153
>PRK14852 hypothetical protein; Provisional
Probab=43.26 E-value=62 Score=41.83 Aligned_cols=83 Identities=18% Similarity=0.166 Sum_probs=62.9
Q ss_pred EEEEeeCCeEEEEEEEEEe----------------------CCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCce
Q 002860 743 CAILTVNSSVVSAGILRVF----------------------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVK 800 (873)
Q Consensus 743 ~~vL~~~~~vVsaA~lri~----------------------g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~ 800 (873)
+++....+++|++.++.+- |..++|+-++|++++.|.+-+--.|+..+-..+...++.
T Consensus 77 ~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~d 156 (989)
T PRK14852 77 VFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVD 156 (989)
T ss_pred EEEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCC
Confidence 3455555667777666542 146999999999887776655455666665556677999
Q ss_pred EEEecchhhHHHHhHhccCcEEcCH
Q 002860 801 SIVLPAAEEAESIWTDKFGFKKIDP 825 (873)
Q Consensus 801 ~lvlpA~~~a~~~w~~~fGF~~i~~ 825 (873)
.+++---++=..||++-|||+.+++
T Consensus 157 d~~i~VnPkH~~FY~r~l~f~~ig~ 181 (989)
T PRK14852 157 DILVTVNPKHVKFYTDIFLFKPFGE 181 (989)
T ss_pred eEEEEECcchHHHHHHHhCCccccc
Confidence 9999999999999999999999986
No 154
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=41.88 E-value=12 Score=35.55 Aligned_cols=51 Identities=22% Similarity=0.594 Sum_probs=33.3
Q ss_pred ccCCCcccccCCCCCCCCcccccCCCCceEec------cCC---CCccccccCC------C-CCCCCCCcccccccc
Q 002860 478 KNGLGIICHCCNSEVSPSQFEAHADGGNLLPC------DGC---PRAFHKECAS------L-SSIPQGDWYCKYCQN 538 (873)
Q Consensus 478 ~~~~~i~C~~C~~~~SpS~FE~hadgG~Ll~C------d~C---~~afH~~CL~------L-~~vP~g~W~C~~C~~ 538 (873)
....+..|..|.+... +....| ..| ...|--.||- + +-+.+++|.||.|+.
T Consensus 3 d~~~g~~CHqCrqKt~----------~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 3 DSVNGKTCHQCRQKTL----------DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cCCCCCCchhhcCCCC----------CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 3456778888887532 222334 445 8888888872 2 234567899999984
No 155
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=40.91 E-value=98 Score=31.83 Aligned_cols=113 Identities=14% Similarity=0.220 Sum_probs=69.7
Q ss_pred cCceEEEccCCCCChhhHHHHHHHHHHhhhcCCCcccCCcCCCcchhhhhcccC-----CCceecCcEEEEEee--CCeE
Q 002860 680 IDVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNL-----RGQEFGGMYCAILTV--NSSV 752 (873)
Q Consensus 680 ~di~W~lLsgk~~s~e~~~~L~~Al~If~EcF~Piid~~TgrDLIp~mvy~~~~-----~~~~f~gfy~~vL~~--~~~v 752 (873)
.+|.|..+.= .+...|.+.-+.+.|-+.- |. |-.-..-|+.+| .-..|...|.+.+.. ++++
T Consensus 22 ~gF~W~~~dl-----~d~~~l~ely~lL~~nYVE--Dd----d~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kL 90 (162)
T PF01233_consen 22 DGFEWSTLDL-----NDDEELKELYELLNENYVE--DD----DNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKL 90 (162)
T ss_dssp TTEEEEE--T-----TSHHHHHHHHHHHHHHSSB--TT----TSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEE
T ss_pred CCCEEEecCC-----CCHHHHHHHHHHHHhcCcc--CC----cceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEE
Confidence 4688987542 2344567777777777721 11 111112244443 223344455555554 5788
Q ss_pred EEE-----EEEEEeCC--ceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEE
Q 002860 753 VSA-----GILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 803 (873)
Q Consensus 753 Vsa-----A~lri~g~--~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lv 803 (873)
||- +.+||.+. ..+||=++.+++.+|.+++.=.|+.+|-|.+-..||-.-+
T Consensus 91 vgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAv 148 (162)
T PF01233_consen 91 VGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAV 148 (162)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEE
T ss_pred EEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeee
Confidence 773 56788775 7899999999999999999999999999998888876544
No 156
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=40.30 E-value=43 Score=38.26 Aligned_cols=77 Identities=23% Similarity=0.222 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHHhhhcC-CCcccCCcCCCcchhhhhcccCCCceecCcEEEEEee--CCeEEEEEEEEEe-C-------
Q 002860 694 PETRLLLSQAVAIFHDCF-DPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV--NSSVVSAGILRVF-G------- 762 (873)
Q Consensus 694 ~e~~~~L~~Al~If~EcF-~Piid~~TgrDLIp~mvy~~~~~~~~f~gfy~~vL~~--~~~vVsaA~lri~-g------- 762 (873)
+.+...|..-++.-.+.| ...++. | -.-.|.+||+. .|+|||++.|..- |
T Consensus 30 P~d~~~L~~rI~~S~~sFa~~~~~~-------~------------~~~~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~ 90 (342)
T PF04958_consen 30 PPDREALAERIERSERSFAGRDVDF-------P------------GDEGYLFVLEDTETGEVVGTSAIEAAVGLDEPFYS 90 (342)
T ss_dssp -S-HHHHHHHHHHHHHHHH-TT-----------------------S--EEEEEEEETTT--EEEEEEEESSTTSSS---E
T ss_pred CCCHHHHHHHHHHHHHHhhccccCC-------C------------CccceEEEEEecCCCcEEEEEeEEeccCCCCCcEE
Confidence 556667776666666777 222211 0 01258889985 5899998865421 1
Q ss_pred ----------------------------CceeeeeeeeeccCCcCCChhHHHHHH
Q 002860 763 ----------------------------QEVAELPLVATSKINHGKGYFQLLFAC 789 (873)
Q Consensus 763 ----------------------------~~~AEip~vAt~~~~r~qG~gr~L~~~ 789 (873)
++..||--+-.+|+||+-|.|+.|..+
T Consensus 91 yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~ 145 (342)
T PF04958_consen 91 YRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRS 145 (342)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHH
T ss_pred EEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHH
Confidence 567888888899999999999888654
No 157
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=40.23 E-value=13 Score=32.57 Aligned_cols=33 Identities=27% Similarity=0.739 Sum_probs=12.5
Q ss_pred eeeccCCCCCCCCCCCCceeeCC--CCCCccCcccCCc
Q 002860 585 CLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKK 620 (873)
Q Consensus 585 C~iC~~~d~~~sg~~~g~LL~CD--qC~rafHv~CL~p 620 (873)
|.||-..-. ..+....+.|+ .|...||..||..
T Consensus 5 C~IC~~~~~---~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 5 CGICYSYRL---DDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp -SSS--SS----TT-----B--S-TT----B-SGGGHH
T ss_pred CCcCCcEec---CCCCcCceEcCCcccCCHHHHHHHHH
Confidence 889976421 11234568898 9999999999964
No 158
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=39.93 E-value=26 Score=41.30 Aligned_cols=30 Identities=27% Similarity=0.219 Sum_probs=23.0
Q ss_pred eeeeeeeccCCcCCChhHHHHHHHHHHhhh
Q 002860 767 ELPLVATSKINHGKGYFQLLFACIEKLLSF 796 (873)
Q Consensus 767 Eip~vAt~~~~r~qG~gr~L~~~iE~~l~~ 796 (873)
-|--|-|.|.||++|||+.|++.==.+.+.
T Consensus 308 NLaCIltlP~yQrkGyG~~LI~~SYeLSr~ 337 (450)
T PLN00104 308 NLACILTLPPYQRKGYGKFLIAFSYELSKR 337 (450)
T ss_pred ceEEEEecchhhhcchhheehhheehhhhc
Confidence 466788999999999999999854443333
No 159
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=39.27 E-value=25 Score=40.72 Aligned_cols=23 Identities=30% Similarity=0.301 Sum_probs=20.0
Q ss_pred eeeeeeccCCcCCChhHHHHHHH
Q 002860 768 LPLVATSKINHGKGYFQLLFACI 790 (873)
Q Consensus 768 ip~vAt~~~~r~qG~gr~L~~~i 790 (873)
+--+=|.|.||++|||+.|++.=
T Consensus 263 laCILtLPpyQRkGYGklLIdFS 285 (396)
T KOG2747|consen 263 LACILTLPPYQRKGYGKLLIDFS 285 (396)
T ss_pred eeeeeecChhhhcccchhhhhhh
Confidence 66778999999999999999753
No 160
>PLN02400 cellulose synthase
Probab=36.92 E-value=45 Score=43.23 Aligned_cols=58 Identities=24% Similarity=0.607 Sum_probs=46.1
Q ss_pred ccCCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCccccccccccc
Q 002860 478 KNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFE 541 (873)
Q Consensus 478 ~~~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~~~~ 541 (873)
+.-++.+|.+|+..+-. .++|+-.+-|..|.-...-.|+.. +..+|.=.||.|+..+.
T Consensus 32 ~~~~gqiCqICGD~VG~-----t~dGe~FVAC~eCaFPVCRpCYEY-ERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 32 KNLNGQICQICGDDVGV-----TETGDVFVACNECAFPVCRPCYEY-ERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred cccCCceeeecccccCc-----CCCCCEEEEEccCCCccccchhhe-ecccCCccCcccCCccc
Confidence 34567899999976543 337888899999988888889865 57788999999987654
No 161
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=35.90 E-value=51 Score=39.42 Aligned_cols=33 Identities=24% Similarity=0.574 Sum_probs=23.6
Q ss_pred CceEeccCCCCccccccCCCCCCCCCCccccccccc
Q 002860 504 GNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNM 539 (873)
Q Consensus 504 G~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~~ 539 (873)
.+|++|..|..--+..|+..+ -..||||.|...
T Consensus 3 ~~L~fC~~C~~irc~~c~~~E---i~~~yCp~CL~~ 35 (483)
T PF05502_consen 3 EELYFCEHCHKIRCPRCVSEE---IDSYYCPNCLFE 35 (483)
T ss_pred ccceecccccccCChhhcccc---cceeECcccccc
Confidence 368889888877777777421 236999999853
No 162
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=35.68 E-value=1.7e+02 Score=32.03 Aligned_cols=59 Identities=7% Similarity=0.027 Sum_probs=47.9
Q ss_pred EEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEE
Q 002860 744 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 803 (873)
Q Consensus 744 ~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lv 803 (873)
+-...+|++||+|.+.+..+.+..|-.+ =+|++-..++|...+..-.+.++.+|.+.+.
T Consensus 147 ~ey~~~g~LiaVav~D~l~d~lSAVY~F-yDPd~~~~SLG~~~iL~qI~~ak~~gl~y~Y 205 (240)
T PRK01305 147 IEFRGDGKLVAVAVTDVLDDGLSAVYTF-YDPDEEHRSLGTFAILWQIELAKRLGLPYVY 205 (240)
T ss_pred EEEEeCCeEEEEEEEeccCCceeeEEEe-eCCCccccCCHHHHHHHHHHHHHHcCCCeEe
Confidence 3345789999999999988887777433 4788888888888888888889999998888
No 163
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=35.29 E-value=13 Score=44.09 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=44.4
Q ss_pred cCCceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCCCCceecCCch---------hhHhHHHHhh
Q 002860 581 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS---------RINSVLQNLL 651 (873)
Q Consensus 581 ~~~~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~---------~I~~~LqkLv 651 (873)
+...|++|.+ ++.++.|+.|.+++|..|.+ ...|...|.| .+|. -+|..+....
T Consensus 88 ~~~~c~vc~~---------ggs~v~~~s~~~~~~r~c~~-------~~~~~c~~~~-~d~~~~~~~~~~~~vw~~vg~~~ 150 (463)
T KOG1081|consen 88 EPSECFVCFK---------GGSLVTCKSRIQAPHRKCKP-------AQLEKCSKRC-TDCRAFKKREVGDLVWSKVGEYP 150 (463)
T ss_pred CcchhccccC---------CCccceeccccccccccCcC-------ccCcccccCC-cceeeeccccceeEEeEEcCccc
Confidence 3456999984 67899999999988999985 3456677776 5554 3455556666
Q ss_pred hhccccCchhhh
Q 002860 652 VQEAEKLPEFHL 663 (873)
Q Consensus 652 ~~~~e~lp~sll 663 (873)
+|+.+...+-++
T Consensus 151 ~~~c~vc~~~~~ 162 (463)
T KOG1081|consen 151 WWPCMVCHDPLL 162 (463)
T ss_pred ccccceecCccc
Confidence 666544433333
No 164
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=35.27 E-value=62 Score=36.94 Aligned_cols=50 Identities=12% Similarity=0.024 Sum_probs=38.1
Q ss_pred CcEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CceeeeeeeeeccCCcCCC
Q 002860 740 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 781 (873)
Q Consensus 740 gfy~~vL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEip~vAt~~~~r~qG 781 (873)
..|.+||+. .|+|||++.|... | ++..||--+-.+|+||+-|
T Consensus 55 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 134 (336)
T TIGR03245 55 ERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTE 134 (336)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 467788884 6888888865431 1 5678888888999999999
Q ss_pred hhHHHHHH
Q 002860 782 YFQLLFAC 789 (873)
Q Consensus 782 ~gr~L~~~ 789 (873)
.|+.|..+
T Consensus 135 ~G~lLSr~ 142 (336)
T TIGR03245 135 AAELLSRA 142 (336)
T ss_pred chhHHHHH
Confidence 99887653
No 165
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=35.00 E-value=64 Score=36.81 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=38.2
Q ss_pred CcEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CceeeeeeeeeccCCcCCC
Q 002860 740 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 781 (873)
Q Consensus 740 gfy~~vL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEip~vAt~~~~r~qG 781 (873)
..|.+||+. .|+|||++.|... | ++..||--+-.+|+||+-|
T Consensus 54 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 133 (335)
T TIGR03243 54 EGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGG 133 (335)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 467788884 5888888865431 1 5678888888999999999
Q ss_pred hhHHHHHH
Q 002860 782 YFQLLFAC 789 (873)
Q Consensus 782 ~gr~L~~~ 789 (873)
.|+.|..+
T Consensus 134 ~G~LLSr~ 141 (335)
T TIGR03243 134 NGRLLSRS 141 (335)
T ss_pred chhhHHHH
Confidence 99887653
No 166
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=35.00 E-value=68 Score=36.64 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=38.0
Q ss_pred CcEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CceeeeeeeeeccCCcCCC
Q 002860 740 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 781 (873)
Q Consensus 740 gfy~~vL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEip~vAt~~~~r~qG 781 (873)
.-|.+||+. .|+|||++.|... | ++..||--+-.+|+||+-|
T Consensus 54 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~ 133 (336)
T TIGR03244 54 QGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGG 133 (336)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCc
Confidence 367788885 5788888865431 1 5678888888999999999
Q ss_pred hhHHHHHH
Q 002860 782 YFQLLFAC 789 (873)
Q Consensus 782 ~gr~L~~~ 789 (873)
.|+.|..+
T Consensus 134 ~G~LLSr~ 141 (336)
T TIGR03244 134 NGRLLSKS 141 (336)
T ss_pred chhhHHHH
Confidence 99887653
No 167
>PLN03239 histone acetyltransferase; Provisional
Probab=34.75 E-value=43 Score=38.32 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=24.8
Q ss_pred eeeeeeeccCCcCCChhHHHHHHHHHHhhhcC
Q 002860 767 ELPLVATSKINHGKGYFQLLFACIEKLLSFLR 798 (873)
Q Consensus 767 Eip~vAt~~~~r~qG~gr~L~~~iE~~l~~lg 798 (873)
-+--|-|.|.||++|||+.|++.==.+.+..|
T Consensus 215 NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 215 NLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 46678899999999999999986555544443
No 168
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=34.51 E-value=24 Score=33.05 Aligned_cols=30 Identities=37% Similarity=0.986 Sum_probs=26.1
Q ss_pred CCcccccCCCCCCCCcccccCCCCceEeccC--CCCccccccC
Q 002860 481 LGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CPRAFHKECA 521 (873)
Q Consensus 481 ~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~--C~~afH~~CL 521 (873)
....|.+|++ ..|-.+.|.. |..+||..|.
T Consensus 54 ~~~~C~iC~~-----------~~G~~i~C~~~~C~~~fH~~CA 85 (110)
T PF13832_consen 54 FKLKCSICGK-----------SGGACIKCSHPGCSTAFHPTCA 85 (110)
T ss_pred cCCcCcCCCC-----------CCceeEEcCCCCCCcCCCHHHH
Confidence 4678999996 3678999998 9999999998
No 169
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=34.44 E-value=39 Score=35.62 Aligned_cols=46 Identities=35% Similarity=0.795 Sum_probs=33.7
Q ss_pred CCCcccccCCCC--CCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCcccccccc
Q 002860 480 GLGIICHCCNSE--VSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 538 (873)
Q Consensus 480 ~~~i~C~~C~~~--~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~ 538 (873)
+.|.+|.+|+.. +-| | +.+....|..|...||..|..- -.||.|..
T Consensus 150 ~kGfiCe~C~~~~~IfP--F----~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~R 197 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFP--F----QIDTTVRCPKCKSVFHKSCFRK-------KSCPKCAR 197 (202)
T ss_pred hCCCCCccCCCCCCCCC--C----CCCCeeeCCcCccccchhhcCC-------CCCCCcHh
Confidence 457889999853 222 2 2357889999999999999952 23999864
No 170
>PRK10456 arginine succinyltransferase; Provisional
Probab=34.15 E-value=64 Score=36.96 Aligned_cols=50 Identities=20% Similarity=0.107 Sum_probs=37.9
Q ss_pred CcEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CceeeeeeeeeccCCcCCC
Q 002860 740 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 781 (873)
Q Consensus 740 gfy~~vL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEip~vAt~~~~r~qG 781 (873)
..|.+||+. .|+|||++.|... | ++..||--+-.+|+||+-|
T Consensus 56 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~ 135 (344)
T PRK10456 56 QGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEG 135 (344)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCC
Confidence 467788884 5888888865431 1 5678888888999999999
Q ss_pred hhHHHHHH
Q 002860 782 YFQLLFAC 789 (873)
Q Consensus 782 ~gr~L~~~ 789 (873)
.|+.|..+
T Consensus 136 ~G~LLSr~ 143 (344)
T PRK10456 136 NGYLLSKS 143 (344)
T ss_pred chhHHHHH
Confidence 99887653
No 171
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=32.95 E-value=16 Score=30.55 Aligned_cols=34 Identities=26% Similarity=0.681 Sum_probs=27.5
Q ss_pred CCcccccCCCCCCCCcccccCCCCceEeccCCCC
Q 002860 481 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPR 514 (873)
Q Consensus 481 ~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~ 514 (873)
++..|.-|+..++|..+..=..+++++.|+.|++
T Consensus 21 ~~~~C~gC~~~l~~~~~~~i~~~~~i~~Cp~CgR 54 (56)
T PF02591_consen 21 EGGTCSGCHMELPPQELNEIRKGDEIVFCPNCGR 54 (56)
T ss_pred eCCccCCCCEEcCHHHHHHHHcCCCeEECcCCCc
Confidence 4458999999998877765555679999999986
No 172
>PLN02436 cellulose synthase A
Probab=32.89 E-value=52 Score=42.67 Aligned_cols=57 Identities=21% Similarity=0.601 Sum_probs=45.4
Q ss_pred cCCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCccccccccccc
Q 002860 479 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFE 541 (873)
Q Consensus 479 ~~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~~~~ 541 (873)
.-++.+|.+|+..+-. .++|+-.+-|..|.-.....|+.. +..+|.-.||.|+..+.
T Consensus 33 ~~~~~iCqICGD~Vg~-----t~dGe~FVACn~C~fpvCr~Cyey-er~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 33 ELSGQTCQICGDEIEL-----TVDGEPFVACNECAFPVCRPCYEY-ERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccCCccccccccccCc-----CCCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchh
Confidence 3467799999987543 337888899999998888889954 57788999999998754
No 173
>PHA02929 N1R/p28-like protein; Provisional
Probab=32.88 E-value=18 Score=39.22 Aligned_cols=55 Identities=18% Similarity=0.336 Sum_probs=32.7
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCcccccccccc
Q 002860 480 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 540 (873)
Q Consensus 480 ~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~~~ 540 (873)
..+..|.+|...+.... .....+..-..|.+.||..|+. .|-...-.||.|+..+
T Consensus 172 ~~~~eC~ICle~~~~~~----~~~~~~~vl~~C~H~FC~~CI~--~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 172 SKDKECAICMEKVYDKE----IKNMYFGILSNCNHVFCIECID--IWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCCccCCcccccCc----cccccceecCCCCCcccHHHHH--HHHhcCCCCCCCCCEe
Confidence 34578999997543200 0000122234688999999994 2323345799999754
No 174
>PTZ00064 histone acetyltransferase; Provisional
Probab=31.70 E-value=63 Score=38.59 Aligned_cols=32 Identities=28% Similarity=0.155 Sum_probs=24.9
Q ss_pred eeeeeeeccCCcCCChhHHHHHHHHHHhhhcC
Q 002860 767 ELPLVATSKINHGKGYFQLLFACIEKLLSFLR 798 (873)
Q Consensus 767 Eip~vAt~~~~r~qG~gr~L~~~iE~~l~~lg 798 (873)
-+--|-|.|.||++|||+.|++.==.+.+..|
T Consensus 386 NLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 386 NLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred ceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 46678899999999999999986555544443
No 175
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=31.65 E-value=9.7 Score=34.37 Aligned_cols=58 Identities=24% Similarity=0.620 Sum_probs=26.3
Q ss_pred ccCCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCccccccccccc
Q 002860 478 KNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFE 541 (873)
Q Consensus 478 ~~~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~~~~ 541 (873)
+.-++.+|.+|+..+-. .++|.-.+-|..|.-.....|+.. +..+|.-.|+.|+..+.
T Consensus 5 k~~~~qiCqiCGD~VGl-----~~~Ge~FVAC~eC~fPvCr~CyEY-Erkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 5 KNLNGQICQICGDDVGL-----TENGEVFVACHECAFPVCRPCYEY-ERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S--SS-B-SSS--B--B------SSSSB--S-SSS-----HHHHHH-HHHTS-SB-TTT--B--
T ss_pred hhcCCcccccccCcccc-----CCCCCEEEEEcccCCccchhHHHH-HhhcCcccccccCCCcc
Confidence 34577899999976543 347888899999987666677754 45677889999987543
No 176
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=30.96 E-value=44 Score=35.23 Aligned_cols=34 Identities=29% Similarity=0.736 Sum_probs=25.5
Q ss_pred eeeccCCCCCCCCCCCCceeeCCCCCCccCcccCC
Q 002860 585 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLK 619 (873)
Q Consensus 585 C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~ 619 (873)
|.+|...+. .=.|...+...|..|...||..|..
T Consensus 155 Ce~C~~~~~-IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 155 CEICNSDDI-IFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CccCCCCCC-CCCCCCCCeeeCCcCccccchhhcC
Confidence 777765421 1235566789999999999999996
No 177
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=30.94 E-value=8.5 Score=34.61 Aligned_cols=59 Identities=20% Similarity=0.381 Sum_probs=35.0
Q ss_pred CCcccccCCCCCCCCc--ccccCCCCceEeccCCCCccccccCC-CCCCCCCCcccccccccc
Q 002860 481 LGIICHCCNSEVSPSQ--FEAHADGGNLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNMF 540 (873)
Q Consensus 481 ~~i~C~~C~~~~SpS~--FE~hadgG~Ll~Cd~C~~afH~~CL~-L~~vP~g~W~C~~C~~~~ 540 (873)
.+..|.+|...+..+. +..-.|.=.|+.- .|...||..|+. .-..|...-+||.|+..+
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWG-YCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHH-HHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 3448888887643211 1111111123322 477899999984 445666778999999764
No 178
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.80 E-value=2.2e+02 Score=30.46 Aligned_cols=81 Identities=22% Similarity=0.151 Sum_probs=59.6
Q ss_pred cCcEEEEEeeCCeEEEEEEEEEeC---------------------Cceeeeeeeeecc--CCcCCCh----hHHHHHHHH
Q 002860 739 GGMYCAILTVNSSVVSAGILRVFG---------------------QEVAELPLVATSK--INHGKGY----FQLLFACIE 791 (873)
Q Consensus 739 ~gfy~~vL~~~~~vVsaA~lri~g---------------------~~~AEip~vAt~~--~~r~qG~----gr~L~~~iE 791 (873)
.--|.+.+..+++|+|++++-... .+++|.-++|++. .-+..|= ...||..+-
T Consensus 51 ~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~i 130 (209)
T COG3916 51 DTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMI 130 (209)
T ss_pred CceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHH
Confidence 447866667899999999874422 4799999999887 4444442 567899999
Q ss_pred HHhhhcCceEEEecchhhHHHHhHhccCc
Q 002860 792 KLLSFLRVKSIVLPAAEEAESIWTDKFGF 820 (873)
Q Consensus 792 ~~l~~lgV~~lvlpA~~~a~~~w~~~fGF 820 (873)
+.+...|+..|+.=...-.+.+..+ .||
T Consensus 131 e~a~~~G~~~IvtVt~~~meril~r-~Gw 158 (209)
T COG3916 131 EYALARGITGIVTVTDTGMERILRR-AGW 158 (209)
T ss_pred HHHHHcCCceEEEEEchHHHHHHHH-cCC
Confidence 9999999999987666555555554 454
No 179
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=30.58 E-value=2.8e+02 Score=32.12 Aligned_cols=135 Identities=17% Similarity=0.300 Sum_probs=88.8
Q ss_pred cCceEEEccCCCCChhhHHHHHHHHHHhhhcCCCcccCCcCCCcchhhhhccc-----CCCceecCcEEEEEeeC--CeE
Q 002860 680 IDVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRN-----LRGQEFGGMYCAILTVN--SSV 752 (873)
Q Consensus 680 ~di~W~lLsgk~~s~e~~~~L~~Al~If~EcF~Piid~~TgrDLIp~mvy~~~-----~~~~~f~gfy~~vL~~~--~~v 752 (873)
..+.|..+- -.+...|.+-.+.+.|.+.- |. |..-..-|..+ +...++.-=|.+.+.+. +++
T Consensus 79 ~gf~W~tld-----v~~~~~l~el~~lL~enyVE--d~----~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kL 147 (421)
T KOG2779|consen 79 TGFRWETLD-----VSDFKDLEELYNLLNENYVE--DD----DSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVKSSKKL 147 (421)
T ss_pred CCceeeccC-----CccHhHHHHHHhhcccCCCC--cc----ccchhhhccHHHHHhhhcCCCCccceEEEEEEecCCce
Confidence 457888753 12344567777777777622 21 22222223333 23334444566666654 477
Q ss_pred EEE-----EEEEEeCC--ceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCce------EEEecchhhHHHHhHhcc-
Q 002860 753 VSA-----GILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVK------SIVLPAAEEAESIWTDKF- 818 (873)
Q Consensus 753 Vsa-----A~lri~g~--~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~------~lvlpA~~~a~~~w~~~f- 818 (873)
||- ++|||.+. ..+||-++.+++..|++++.=.|+..|-|...-.||- -++||+-...-.-|.+.+
T Consensus 148 VaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp~PVstcRY~HRsLN 227 (421)
T KOG2779|consen 148 VAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLPKPVSTCRYWHRSLN 227 (421)
T ss_pred EEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeeccccchhhhhhccCC
Confidence 663 57888885 6899999999999999999999999999877666653 477888777777777643
Q ss_pred -------CcEEcCH
Q 002860 819 -------GFKKIDP 825 (873)
Q Consensus 819 -------GF~~i~~ 825 (873)
||+.++.
T Consensus 228 pkKL~dv~Fs~l~~ 241 (421)
T KOG2779|consen 228 PKKLIDVGFSHLSR 241 (421)
T ss_pred hhHeeEeccccccc
Confidence 6665544
No 180
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=30.18 E-value=41 Score=43.52 Aligned_cols=58 Identities=26% Similarity=0.679 Sum_probs=46.2
Q ss_pred ccCCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCccccccccccc
Q 002860 478 KNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFE 541 (873)
Q Consensus 478 ~~~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~~~~ 541 (873)
+.-++.+|.+|+..+-. .++|+-.+-|..|.-.....|+.. +..+|.=.||.|+..+.
T Consensus 13 ~~~~~qiCqICGD~vg~-----~~~Ge~FVAC~eC~FPVCrpCYEY-Er~eG~q~CPqCktrYk 70 (1079)
T PLN02638 13 KHGGGQVCQICGDNVGK-----TVDGEPFVACDVCAFPVCRPCYEY-ERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred cccCCceeeecccccCc-----CCCCCEEEEeccCCCccccchhhh-hhhcCCccCCccCCchh
Confidence 34567899999986543 347888899999988888889965 67789999999987654
No 181
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=30.10 E-value=28 Score=39.78 Aligned_cols=44 Identities=18% Similarity=0.456 Sum_probs=34.0
Q ss_pred ceeeCCCCCCccCccc--CCcCCCCcccCCCCCCceecCCchhhHhHHHH
Q 002860 602 TILLCDQCEREFHVGC--LKKHKMADLRELPKGKWFCCMDCSRINSVLQN 649 (873)
Q Consensus 602 ~LL~CDqC~rafHv~C--L~p~~~~~L~e~P~g~WfC~~~C~~I~~~Lqk 649 (873)
-++.|+.|..|||.+| ++.. -....+...|+| ..|......++.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~---~~e~p~~~~~~c-~~c~~~~~~~~~ 119 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTA---EKEAPKEDPKVC-DECKEAQDGMSE 119 (345)
T ss_pred hhhccccccccccccccccCch---hhcCCccccccc-cccchhhhhhhh
Confidence 5789999999999999 7642 334445678999 999988766654
No 182
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=28.34 E-value=15 Score=45.45 Aligned_cols=96 Identities=20% Similarity=0.127 Sum_probs=69.7
Q ss_pred CceecC-cEEEEEeeCCe-EEEEEEEEEeCC-ceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcC-ceEEEecchhhH
Q 002860 735 GQEFGG-MYCAILTVNSS-VVSAGILRVFGQ-EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAAEEA 810 (873)
Q Consensus 735 ~~~f~g-fy~~vL~~~~~-vVsaA~lri~g~-~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lg-V~~lvlpA~~~a 810 (873)
|+.|.+ .-++.+..+++ +|+.-..|-++. +++||.+.|+..+.|-.|+|..||+-+-...+.-. +..+..-|...|
T Consensus 412 rlv~d~~h~~~~~~~d~~g~vggi~~r~f~~k~f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~ltyad~~a 491 (720)
T KOG1472|consen 412 RLVFDTSHHVMARIKDNEGVVGGICFRPFPEKGFTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALTYADEGA 491 (720)
T ss_pred hhccccccccceeeccccccccccccCcCcccCCcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHHhhhhcc
Confidence 566655 33344445544 889888887774 89999999999999999999999999988887776 556666666666
Q ss_pred HHHhHhccCcEEcCHHHHHHH
Q 002860 811 ESIWTDKFGFKKIDPELLSIY 831 (873)
Q Consensus 811 ~~~w~~~fGF~~i~~~~~~~~ 831 (873)
..... +-||+.--+.+...+
T Consensus 492 igyfk-kqgfs~ei~~~~~~~ 511 (720)
T KOG1472|consen 492 IGYFK-KQGFSKEIKFEKSPY 511 (720)
T ss_pred ccccc-CccchhhcccccCcC
Confidence 55444 488876555444333
No 183
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=27.79 E-value=22 Score=41.52 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=30.9
Q ss_pred CCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCcccccccc
Q 002860 481 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 538 (873)
Q Consensus 481 ~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~ 538 (873)
+-..|.+|.+-+.+|. ..+.-.-|..+||-.|+. .| ++-.||-|+.
T Consensus 174 ELPTCpVCLERMD~s~--------~gi~t~~c~Hsfh~~cl~--~w--~~~scpvcR~ 219 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSST--------TGILTILCNHSFHCSCLM--KW--WDSSCPVCRY 219 (493)
T ss_pred cCCCcchhHhhcCccc--------cceeeeecccccchHHHh--hc--ccCcChhhhh
Confidence 3467999997655432 344556688999999993 23 2456888875
No 184
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=27.70 E-value=18 Score=34.35 Aligned_cols=52 Identities=27% Similarity=0.652 Sum_probs=32.7
Q ss_pred ceeeccCCCCCCCCCCCCceeeC------CCC---CCccCcccCCcCCCCcc-cCCCCCCceecCCchhh
Q 002860 584 GCLLCRGCDFSKSGFGPRTILLC------DQC---EREFHVGCLKKHKMADL-RELPKGKWFCCMDCSRI 643 (873)
Q Consensus 584 ~C~iC~~~d~~~sg~~~g~LL~C------DqC---~rafHv~CL~p~~~~~L-~e~P~g~WfC~~~C~~I 643 (873)
.|+.|+... .+..+.| ..| ...|=-.||...--.++ +.+.+.+|.| +.|..|
T Consensus 9 ~CHqCrqKt-------~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~C-P~Crgi 70 (105)
T PF10497_consen 9 TCHQCRQKT-------LDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKC-PKCRGI 70 (105)
T ss_pred CchhhcCCC-------CCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceEC-CCCCCe
Confidence 488888642 2233456 566 88898899865432222 2345679999 788653
No 185
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=27.40 E-value=43 Score=43.01 Aligned_cols=48 Identities=31% Similarity=0.877 Sum_probs=37.5
Q ss_pred ceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCCcCCCCcccCCCCCCceecCCchhh
Q 002860 584 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 643 (873)
Q Consensus 584 ~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~~I 643 (873)
.|..|.+.. ....+ .|+.|...||..|+.+ ++..++++.|.| ..|...
T Consensus 157 ~~~~~~k~~------~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~ 204 (904)
T KOG1246|consen 157 QCNTCSKGK------EEKLL-LCDSCDDSYHTYCLRP----PLTRVPDGDWRC-PKCIPT 204 (904)
T ss_pred hhhccccCC------Cccce-ecccccCcccccccCC----CCCcCCcCcccC-Cccccc
Confidence 477887642 23334 9999999999999987 678889999998 777644
No 186
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=26.92 E-value=20 Score=26.13 Aligned_cols=28 Identities=21% Similarity=0.532 Sum_probs=12.3
Q ss_pred eeeccCCCCCCCCCCCCceeeCCCCCCccCcccC
Q 002860 585 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCL 618 (873)
Q Consensus 585 C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL 618 (873)
|..|+... .++....|.+|+-..|..|.
T Consensus 3 C~~C~~~~------~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 3 CDACGKPI------DGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp -TTTS----------S--EEE-TTT-----HHHH
T ss_pred CCcCCCcC------CCCceEECccCCCccChhcC
Confidence 78888653 22478999999999999883
No 187
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=26.27 E-value=50 Score=42.50 Aligned_cols=49 Identities=33% Similarity=0.815 Sum_probs=37.9
Q ss_pred CCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCC--CCCCCCCCccccccccc
Q 002860 481 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 539 (873)
Q Consensus 481 ~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~--L~~vP~g~W~C~~C~~~ 539 (873)
....|..|.+... . .++.|++|...||..|.. +..+++++|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKE---------E-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCC---------c-cceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 3456777876432 1 334999999999999995 78899999999999754
No 188
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=25.77 E-value=22 Score=26.62 Aligned_cols=30 Identities=20% Similarity=0.521 Sum_probs=20.2
Q ss_pred EeccCCCCccccccCC-CCCCCCCCcccccccc
Q 002860 507 LPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQN 538 (873)
Q Consensus 507 l~Cd~C~~afH~~CL~-L~~vP~g~W~C~~C~~ 538 (873)
+.-..|...||..|+. +.. .+...||.|+.
T Consensus 13 ~~~~~C~H~~c~~C~~~~~~--~~~~~Cp~C~~ 43 (45)
T cd00162 13 VVLLPCGHVFCRSCIDKWLK--SGKNTCPLCRT 43 (45)
T ss_pred eEecCCCChhcHHHHHHHHH--hCcCCCCCCCC
Confidence 3445588999999995 111 14677999874
No 189
>PLN02189 cellulose synthase
Probab=24.47 E-value=57 Score=42.17 Aligned_cols=56 Identities=21% Similarity=0.597 Sum_probs=44.6
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCccccccccccc
Q 002860 480 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFE 541 (873)
Q Consensus 480 ~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~~~~ 541 (873)
-++..|.+|+..+... ++|.-.+-|..|.-.....|+.. +..+|.-.||.|+..+.
T Consensus 32 ~~~~~C~iCgd~vg~~-----~~g~~fvaC~~C~fpvCr~Cyey-er~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 32 LDGQVCEICGDEIGLT-----VDGDLFVACNECGFPVCRPCYEY-ERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccCccccccccccCcC-----CCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchh
Confidence 4667999999876542 37778899999988888889854 57788999999987754
No 190
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=24.38 E-value=49 Score=39.70 Aligned_cols=45 Identities=29% Similarity=0.414 Sum_probs=31.4
Q ss_pred CCCcccccCCCCceEeccCCCCccccccCCC-CCCCC--CCcccccccc
Q 002860 493 SPSQFEAHADGGNLLPCDGCPRAFHKECASL-SSIPQ--GDWYCKYCQN 538 (873)
Q Consensus 493 SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L-~~vP~--g~W~C~~C~~ 538 (873)
.++.||.|.++ ..+.|+.|-++||..|+.. .+.++ ..|.|+.|..
T Consensus 60 d~~cfechlpg-~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 60 DPFCFECHLPG-AVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred CcccccccCCc-ceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 34445556555 6678999999999999952 23333 3599998864
No 191
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=24.13 E-value=28 Score=42.25 Aligned_cols=38 Identities=32% Similarity=0.734 Sum_probs=28.1
Q ss_pred CCCCceeeCCCCCCccCcccCCcCCCCcccCCCCCCceecCCchhhHhHH
Q 002860 598 FGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVL 647 (873)
Q Consensus 598 ~~~g~LL~CDqC~rafHv~CL~p~~~~~L~e~P~g~WfC~~~C~~I~~~L 647 (873)
|..++...|+.|...||..|+.... + .| +.|.+++.+-
T Consensus 526 F~~~~~~rC~~C~avfH~~C~~r~s-------~----~C-PrC~R~q~r~ 563 (580)
T KOG1829|consen 526 FETRNTRRCSTCLAVFHKKCLRRKS-------P----CC-PRCERRQKRA 563 (580)
T ss_pred cccccceeHHHHHHHHHHHHHhccC-------C----CC-CchHHHHHHh
Confidence 4456778999999999999997521 1 16 8897776543
No 192
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.24 E-value=68 Score=39.11 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=20.8
Q ss_pred CceeeccCCCCCCCCCCCCceeeCCCCCCccCcccCC
Q 002860 583 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLK 619 (873)
Q Consensus 583 ~~C~iC~~~d~~~sg~~~g~LL~CDqC~rafHv~CL~ 619 (873)
+.|..|+..+ .++ =+||.|.+.|++.+|.
T Consensus 143 g~cp~cg~~~-----arG---D~Ce~Cg~~~~P~~l~ 171 (558)
T COG0143 143 GTCPKCGGED-----ARG---DQCENCGRTLDPTELI 171 (558)
T ss_pred ccCCCcCccc-----cCc---chhhhccCcCCchhcC
Confidence 4588888432 112 3799999999999974
No 193
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=23.22 E-value=1e+02 Score=30.30 Aligned_cols=47 Identities=15% Similarity=0.313 Sum_probs=28.7
Q ss_pred eccCCcCCChhHHHHHHHHHHhhhcCceE--EEecc-hhhHHHHhHhccCcEE
Q 002860 773 TSKINHGKGYFQLLFACIEKLLSFLRVKS--IVLPA-AEEAESIWTDKFGFKK 822 (873)
Q Consensus 773 t~~~~r~qG~gr~L~~~iE~~l~~lgV~~--lvlpA-~~~a~~~w~~~fGF~~ 822 (873)
+++..||+|+|++|++.+.+. .++.. +-.+- .+...+|..+-+|-+.
T Consensus 54 Vhes~QR~G~Gk~LF~~ML~~---e~~~p~~~a~DrPS~Kll~Fl~Khy~L~~ 103 (120)
T PF05301_consen 54 VHESRQRRGYGKRLFDHMLQE---ENVSPHQLAIDRPSPKLLSFLKKHYGLQR 103 (120)
T ss_pred EEeceeccCchHHHHHHHHHH---cCCCcccceecCCcHHHHHHHHHhcCCCc
Confidence 678999999999999876554 44432 22221 2234555555455543
No 194
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=22.51 E-value=77 Score=25.62 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=27.3
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCC
Q 002860 480 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASL 523 (873)
Q Consensus 480 ~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L 523 (873)
.....|..|++.+.. .+..-+.|..|....|..|+..
T Consensus 9 ~~~~~C~~C~~~i~g-------~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWG-------LGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECS-------SSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCCcccCcccCC-------CCCCeEEECCCCChHhhhhhhh
Confidence 355689999987632 3567899999999999999953
No 195
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=22.27 E-value=31 Score=27.59 Aligned_cols=39 Identities=23% Similarity=0.676 Sum_probs=17.4
Q ss_pred cccCCCCCCCCcccccCCCCceEecc--CCCCccccccCC--CCCCCCCCcccccc
Q 002860 485 CHCCNSEVSPSQFEAHADGGNLLPCD--GCPRAFHKECAS--LSSIPQGDWYCKYC 536 (873)
Q Consensus 485 C~~C~~~~SpS~FE~hadgG~Ll~Cd--~C~~afH~~CL~--L~~vP~g~W~C~~C 536 (873)
|..|.+.++ .-+.|. +|+..+|..|+. +...... .||.|
T Consensus 1 C~~C~~iv~-----------~G~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVT-----------QGQRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB-S-----------SSEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHe-----------eeccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 566775544 224577 699999999995 3333222 67766
No 196
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=21.95 E-value=2.8e+02 Score=28.02 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=44.0
Q ss_pred cCcEEEEEeeCCeEEEEEEEEEeCCceeeeeeeeeccCCcCCChhHHHHHHHHHHhhhcCceEEEecchhhHHHHhHhcc
Q 002860 739 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKF 818 (873)
Q Consensus 739 ~gfy~~vL~~~~~vVsaA~lri~g~~~AEip~vAt~~~~r~qG~gr~L~~~iE~~l~~lgV~~lvlpA~~~a~~~w~~~f 818 (873)
.|.+.+.++.||.++|++.|..+.+ |.+|+++|+... ...+-+=. .|
T Consensus 65 ag~V~v~v~~~g~~~~~~~ikyys~-----------------------~~el~~lL~~~~---------~PvefmCQ-a~ 111 (142)
T PF14545_consen 65 AGSVNVRVYCDGVSLGTRQIKYYSR-----------------------MRELEQLLRKAA---------NPVEFMCQ-AF 111 (142)
T ss_pred CceEEEEEEECCEEEEEEeEEEEec-----------------------HHHHHHHHHhcC---------Chhhhhhh-hc
Confidence 6788888889999999888888763 667888876631 11222333 38
Q ss_pred CcEEcCHHHHHHHHhh
Q 002860 819 GFKKIDPELLSIYRKR 834 (873)
Q Consensus 819 GF~~i~~~~~~~~~~~ 834 (873)
|+..-+.+++..+...
T Consensus 112 ~i~p~~~E~LD~~Lt~ 127 (142)
T PF14545_consen 112 GISPNDREELDNLLTE 127 (142)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 8888888887776554
No 197
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=21.86 E-value=63 Score=38.46 Aligned_cols=46 Identities=24% Similarity=0.533 Sum_probs=38.0
Q ss_pred CCCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCcccccccc
Q 002860 480 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 538 (873)
Q Consensus 480 ~~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~ 538 (873)
.....|.+|. ++|.+++|+.|..++|-.|... ..|...|.|..|+.
T Consensus 87 ~~~~~c~vc~------------~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~ 132 (463)
T KOG1081|consen 87 IEPSECFVCF------------KGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRA 132 (463)
T ss_pred CCcchhcccc------------CCCccceeccccccccccCcCc-cCcccccCCcceee
Confidence 3567899998 6999999999999999999965 56777888887764
No 198
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=21.38 E-value=71 Score=41.38 Aligned_cols=55 Identities=24% Similarity=0.586 Sum_probs=44.3
Q ss_pred CCcccccCCCCCCCCcccccCCCCceEeccCCCCccccccCCCCCCCCCCccccccccccc
Q 002860 481 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFE 541 (873)
Q Consensus 481 ~~i~C~~C~~~~SpS~FE~hadgG~Ll~Cd~C~~afH~~CL~L~~vP~g~W~C~~C~~~~~ 541 (873)
.+.+|.+|+..+-. .++|+-.+-|..|.-.....|+.. +..+|.=.||.|+..+.
T Consensus 14 ~~~~c~iCGd~vg~-----~~~Ge~FVAC~eC~fpvCr~cyey-e~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGV-----KEDGQPFVACHVCGFPVCKPCYEY-ERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCc-----CCCCCEEEEeccCCCccccchhhh-hhhcCCccCCccCCchh
Confidence 56899999976543 347888899999998888889855 57788999999987654
No 199
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=20.69 E-value=45 Score=38.00 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=19.8
Q ss_pred eeeeeeeeccCCcCCChhHHHHHH
Q 002860 766 AELPLVATSKINHGKGYFQLLFAC 789 (873)
Q Consensus 766 AEip~vAt~~~~r~qG~gr~L~~~ 789 (873)
-.+--+-|.|.|||.|||..|++.
T Consensus 263 yNLaCILtLP~yQRrGYG~lLIdF 286 (395)
T COG5027 263 YNLACILTLPPYQRRGYGKLLIDF 286 (395)
T ss_pred CceEEEEecChhHhcccceEeeee
Confidence 346677899999999999998863
Done!