BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002861
(873 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K85|A Chain A, Crystal Structure Of A D-Glycero-D-Manno-Heptose
1-Phosphate Kinase From Bacteriodes Thetaiotaomicron
pdb|3K85|B Chain B, Crystal Structure Of A D-Glycero-D-Manno-Heptose
1-Phosphate Kinase From Bacteriodes Thetaiotaomicron
Length = 357
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 123/296 (41%), Gaps = 20/296 (6%)
Query: 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDA 588
V+ + P+R+ AGG SD P+S G +LN I+L + TI ET + + DA
Sbjct: 4 VRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYC---TIEETNSGRIEINAYDA 60
Query: 589 GNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGV----IHEKLIESMGLQIRTWANVPRG 644
+ + A L+ GV I + +E +I T+ + P G
Sbjct: 61 ----------QCCKSYLSXSQLEIDGEASLIKGVYNRIIRDYRLEPKSFKITTYNDAPAG 110
Query: 645 SGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-MXXXXXXXXXXXXLYPGIK 703
SGLGTSS ++KA ++ + +RL +E+ + + G
Sbjct: 111 SGLGTSSTXVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFN 170
Query: 704 FTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLL 763
+ F L + V PL ++ EL+ ++ FTG+ R + ++ + + +
Sbjct: 171 YX-EFLQNDLVI-VNPLKXKRWIVDELESSXVLYFTGRSRSSAAIINEQKKNTSEGNQTA 228
Query: 764 ISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFA 819
I + ++ + A + + AL+ DV E +I+ E W ++ +N + F A
Sbjct: 229 IEAXHKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKXAGAITNPXIQEAFDVA 284
>pdb|2OEJ|A Chain A, Crystal Structure Of A Rubisco-like Protein From
Geobacillus Kaustophilus (tetramutant Form), Liganded
With Phosphate Ions
pdb|2OEJ|B Chain B, Crystal Structure Of A Rubisco-like Protein From
Geobacillus Kaustophilus (tetramutant Form), Liganded
With Phosphate Ions
Length = 413
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 405 CINYGMLGRNLSQLCEEILQKELSGVDICKD 435
I GM+GR+L+ L E+ ++ L GVD+ KD
Sbjct: 144 SIFKGMIGRDLAYLTPELKKQALGGVDLVKD 174
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 632 GLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDG---DQSNENVARLVLLLEQLM 685
GLQ+ +VP GSGL +S+ AV A+++ G S +N+ R+ ++ E +
Sbjct: 173 GLQVFCEGDVPTGSGLSSSAAFICAVALAVVKANMGPGYHMSKQNLMRITVVAEHYV 229
>pdb|2ZVI|A Chain A, Crystal Structure Of 2,3-Diketo-5-Methylthiopentyl-1-
Phosphate Enolase From Bacillus Subtilis
pdb|2ZVI|B Chain B, Crystal Structure Of 2,3-Diketo-5-Methylthiopentyl-1-
Phosphate Enolase From Bacillus Subtilis
pdb|2ZVI|C Chain C, Crystal Structure Of 2,3-Diketo-5-Methylthiopentyl-1-
Phosphate Enolase From Bacillus Subtilis
pdb|2ZVI|D Chain D, Crystal Structure Of 2,3-Diketo-5-Methylthiopentyl-1-
Phosphate Enolase From Bacillus Subtilis
Length = 425
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 405 CINYGMLGRNLSQLCEEILQKELSGVDICKD 435
I G++GR+LS + E++ Q+ L GVD+ KD
Sbjct: 158 SIFKGVIGRDLSDIKEQLRQQALGGVDLIKD 188
>pdb|1MIV|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme
pdb|1MIV|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme
pdb|1MIW|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme In Complex With Atp
pdb|1MIW|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme In Complex With Atp
Length = 404
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 3 GDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDG 45
GDV D +T LPED I P T+D+ S HG +V G
Sbjct: 39 GDV----DIATSALPEDVXAIF--PKTIDVGSKHGTVVVVHKG 75
>pdb|1MIY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Cca-adding Enzyme In Complex With Ctp
pdb|1MIY|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Cca-adding Enzyme In Complex With Ctp
Length = 404
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 3 GDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDG 45
GDV D +T LPED I P T+D+ S HG +V G
Sbjct: 39 GDV----DIATSALPEDVMAIF--PKTIDVGSKHGTVVVVHKG 75
>pdb|1TU7|A Chain A, Structure Of Onchocerca Volvulus Pi-Class Glutathione
S-Transferase
pdb|1TU7|B Chain B, Structure Of Onchocerca Volvulus Pi-Class Glutathione
S-Transferase
pdb|1TU8|A Chain A, Structure Of Onchoverca Volvulus Pi-Class Glutathione S-
Transferase With Its Kompetitive Inhibitor S-Hexyl-Gsh
pdb|1TU8|B Chain B, Structure Of Onchoverca Volvulus Pi-Class Glutathione S-
Transferase With Its Kompetitive Inhibitor S-Hexyl-Gsh
pdb|1TU8|C Chain C, Structure Of Onchoverca Volvulus Pi-Class Glutathione S-
Transferase With Its Kompetitive Inhibitor S-Hexyl-Gsh
pdb|1TU8|D Chain D, Structure Of Onchoverca Volvulus Pi-Class Glutathione S-
Transferase With Its Kompetitive Inhibitor S-Hexyl-Gsh
Length = 208
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 764 ISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEF 811
++ ++L NGR+ ++ + + E +HQ LDPHC ++F
Sbjct: 125 LAKFEKLLATRGNGRNLILGDKISYADYALFEELDVHQILDPHCLDKF 172
>pdb|1XOU|A Chain A, Crystal Structure Of The Cesa-Espa Complex
Length = 192
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 435 DILDLCPRLQDQNSKILPKSRAYQAQVDLL--------RACKEETTASELEHKVWAAVAD 486
D++DL +L + IL + YQAQ DL A KE TTA + + V A +AD
Sbjct: 31 DVIDLFNKLGVFQAAILXFAYXYQAQSDLSIAKFADXNEASKESTTAQKXANLVDAKIAD 90
Query: 487 ETASAIK 493
+S+ K
Sbjct: 91 VQSSSDK 97
>pdb|2OEK|A Chain A, Crystal Structure Of A Rubisco-Like Protein From
Geobacillus Kaustophilus Liganded With Mg2+ Ions
pdb|2OEK|B Chain B, Crystal Structure Of A Rubisco-Like Protein From
Geobacillus Kaustophilus Liganded With Mg2+ Ions
pdb|2OEL|A Chain A, Crystal Structure Of A Rubisco-Like Protein From
Geobacillus Kaustophilus Liganded With Mg2+ And Hco3-
Ions
pdb|2OEL|B Chain B, Crystal Structure Of A Rubisco-Like Protein From
Geobacillus Kaustophilus Liganded With Mg2+ And Hco3-
Ions
pdb|2OEM|A Chain A, Crystal Structure Of A Rubisco-Like Protein From
Geobacillus Kaustophilus Liganded With Mg2+ And
2,3-Diketohexane 1-Phosphate
pdb|2OEM|B Chain B, Crystal Structure Of A Rubisco-Like Protein From
Geobacillus Kaustophilus Liganded With Mg2+ And
2,3-Diketohexane 1-Phosphate
Length = 413
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 405 CINYGMLGRNLSQLCEEILQKELSGVDICKD 435
I GM+GR+L+ L E+ ++ L GVD+ D
Sbjct: 144 SIFKGMIGRDLAYLTSELKKQALGGVDLVXD 174
>pdb|3FK4|A Chain A, Crystal Structure Of Rubisco-Like Protein From Bacillus
Cereus Atcc 14579
pdb|3FK4|B Chain B, Crystal Structure Of Rubisco-Like Protein From Bacillus
Cereus Atcc 14579
Length = 414
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 405 CINYGMLGRNLSQLCEEILQKELSGVDICKD 435
I GM+GRN+ L ++ + + GVDI KD
Sbjct: 145 SIFKGMIGRNIGYLKTQLRDQAIGGVDIVKD 175
>pdb|3T2U|A Chain A, Structure Of Wuchereria Bancrofti Pi-Class Glutathione
S-Transferase
pdb|3T2U|B Chain B, Structure Of Wuchereria Bancrofti Pi-Class Glutathione
S-Transferase
Length = 208
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 729 ELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRL--TELAK---------NG 777
EL+ + +F VR H K++ Y D S IK + ELAK +G
Sbjct: 81 ELETTHIDMFCEGVRDLHTKYTKMI--YQAYDTEKDSYIKDILPVELAKFEKLLATRDDG 138
Query: 778 RDALMNCDVDELGKIMLEAWRLHQELDPHCSNEF 811
++ ++ + + ++ E +HQ LDPHC ++F
Sbjct: 139 KNFILGEKISYVDFVLFEELDIHQILDPHCLDKF 172
>pdb|1KVK|A Chain A, The Structure Of Binary Complex Between A Mammalian
Mevalonate Kinase And Atp: Insights Into The Reaction
Mechanism And Human Inherited Disease
pdb|2R42|A Chain A, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
Length = 395
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 633 LQIRTWANVPRGSGLGTSSILAAAVVKALL 662
L I W+ +P G+GLG+S+ + V ALL
Sbjct: 129 LDIMVWSELPPGAGLGSSAAYSVCVAAALL 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,752,092
Number of Sequences: 62578
Number of extensions: 1001593
Number of successful extensions: 2057
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2045
Number of HSP's gapped (non-prelim): 16
length of query: 873
length of database: 14,973,337
effective HSP length: 107
effective length of query: 766
effective length of database: 8,277,491
effective search space: 6340558106
effective search space used: 6340558106
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)