Query 002861
Match_columns 873
No_of_seqs 448 out of 2464
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 12:16:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13412 fkp bifunctional fuco 100.0 1E-132 2E-137 1190.1 71.1 785 1-872 158-967 (974)
2 KOG4644 L-fucose kinase [Carbo 100.0 3.8E-88 8.2E-93 723.6 44.8 823 17-872 30-938 (948)
3 PF07959 Fucokinase: L-fucokin 100.0 7.7E-66 1.7E-70 582.0 25.7 336 1-343 59-414 (414)
4 COG2605 Predicted kinase relat 100.0 1.7E-48 3.7E-53 399.1 30.9 314 529-863 2-319 (333)
5 COG0153 GalK Galactokinase [Ca 100.0 3.6E-43 7.9E-48 378.6 35.1 318 528-871 23-384 (390)
6 PRK05101 galactokinase; Provis 100.0 1.5E-39 3.3E-44 366.4 37.0 315 529-870 21-376 (382)
7 PRK00555 galactokinase; Provis 100.0 3.2E-39 6.9E-44 361.2 37.4 317 529-870 3-356 (363)
8 PRK05322 galactokinase; Provis 100.0 6E-39 1.3E-43 362.0 34.9 320 529-871 20-382 (387)
9 PLN02865 galactokinase 100.0 1.5E-38 3.1E-43 357.8 35.4 323 529-870 31-417 (423)
10 PTZ00290 galactokinase; Provis 100.0 3.3E-38 7.1E-43 358.0 36.1 320 529-870 38-450 (468)
11 TIGR01220 Pmev_kin_Gr_pos phos 100.0 6.9E-38 1.5E-42 350.1 36.9 312 530-858 2-346 (358)
12 TIGR00131 gal_kin galactokinas 100.0 7.6E-38 1.6E-42 354.4 35.1 318 529-871 18-381 (386)
13 PLN02677 mevalonate kinase 100.0 1.2E-36 2.6E-41 339.6 34.5 314 529-871 3-376 (387)
14 TIGR00549 mevalon_kin mevalona 100.0 6.9E-37 1.5E-41 331.5 30.5 271 533-840 1-273 (273)
15 PLN02521 galactokinase 100.0 6.7E-36 1.5E-40 343.5 35.3 319 529-870 49-488 (497)
16 COG0448 GlgC ADP-glucose pyrop 100.0 3.7E-38 8E-43 341.0 10.3 213 1-271 125-363 (393)
17 COG1577 ERG12 Mevalonate kinas 100.0 2.4E-35 5.2E-40 316.9 30.8 293 530-858 2-296 (307)
18 PRK03926 mevalonate kinase; Pr 100.0 3E-34 6.6E-39 315.3 37.0 290 529-871 2-293 (302)
19 PRK03817 galactokinase; Provis 100.0 1.9E-34 4.1E-39 323.0 35.6 313 530-870 2-344 (351)
20 PTZ00298 mevalonate kinase; Pr 100.0 7.2E-33 1.6E-37 307.0 32.5 306 529-868 11-322 (328)
21 KOG1511 Mevalonate kinase MVK/ 100.0 3.6E-28 7.8E-33 255.1 30.4 304 529-857 5-363 (397)
22 PRK00128 ipk 4-diphosphocytidy 99.9 1.7E-25 3.6E-30 244.0 25.4 276 529-871 3-283 (286)
23 PLN02451 homoserine kinase 99.9 1E-24 2.2E-29 243.9 30.3 305 522-872 47-360 (370)
24 KOG0631 Galactokinase [Carbohy 99.9 5.7E-25 1.2E-29 241.3 22.2 310 528-857 39-457 (489)
25 COG0083 ThrB Homoserine kinase 99.9 4.2E-24 9E-29 227.6 27.8 281 528-871 3-291 (299)
26 PRK02534 4-diphosphocytidyl-2- 99.9 1.1E-23 2.3E-28 232.3 28.5 290 528-871 3-305 (312)
27 TIGR01219 Pmev_kin_ERG8 phosph 99.9 6.2E-23 1.3E-27 232.1 34.2 321 531-870 2-442 (454)
28 PRK01212 homoserine kinase; Pr 99.9 1.8E-23 4E-28 229.7 27.0 287 528-872 3-296 (301)
29 TIGR00154 ispE 4-diphosphocyti 99.9 5.4E-23 1.2E-27 224.2 28.7 268 529-857 2-274 (293)
30 PTZ00299 homoserine kinase; Pr 99.9 4E-23 8.7E-28 227.2 23.6 286 526-872 5-317 (336)
31 TIGR00191 thrB homoserine kina 99.9 7.2E-23 1.6E-27 224.8 25.0 286 529-872 1-297 (302)
32 PRK03188 4-diphosphocytidyl-2- 99.9 8.8E-22 1.9E-26 216.1 26.0 272 530-857 2-276 (300)
33 PRK01123 shikimate kinase; Pro 99.9 1.1E-20 2.5E-25 205.2 27.3 272 535-872 3-277 (282)
34 PRK14614 4-diphosphocytidyl-2- 99.9 1.7E-20 3.7E-25 203.5 27.6 263 529-857 4-269 (280)
35 PRK14615 4-diphosphocytidyl-2- 99.9 3.2E-20 6.8E-25 202.7 26.4 278 526-857 4-287 (296)
36 PRK14608 4-diphosphocytidyl-2- 99.9 1.2E-19 2.5E-24 197.8 29.3 265 528-857 6-278 (290)
37 PRK14616 4-diphosphocytidyl-2- 99.9 6.4E-20 1.4E-24 200.0 26.7 266 528-857 3-273 (287)
38 TIGR01920 Shik_kin_archae shik 99.9 1.9E-19 4E-24 193.1 28.2 234 558-857 17-254 (261)
39 PRK14611 4-diphosphocytidyl-2- 99.9 1.1E-19 2.3E-24 197.0 25.7 268 530-868 3-273 (275)
40 PRK14612 4-diphosphocytidyl-2- 99.9 9.1E-20 2E-24 197.6 24.6 259 529-857 3-264 (276)
41 PRK14613 4-diphosphocytidyl-2- 99.8 4.9E-19 1.1E-23 193.3 27.9 279 532-857 2-286 (297)
42 PRK14609 4-diphosphocytidyl-2- 99.8 6.1E-19 1.3E-23 189.9 20.7 252 530-848 2-257 (269)
43 PRK00343 ipk 4-diphosphocytidy 99.8 3.6E-18 7.8E-23 184.1 26.6 253 529-857 7-262 (271)
44 COG1947 IspE 4-diphosphocytidy 99.8 2.4E-18 5.2E-23 182.5 24.5 274 528-869 3-283 (289)
45 TIGR00144 beta_RFAP_syn beta-R 99.8 1.1E-17 2.5E-22 184.5 27.1 294 530-871 2-318 (324)
46 PRK14610 4-diphosphocytidyl-2- 99.8 8.6E-18 1.9E-22 182.4 25.0 261 528-857 3-270 (283)
47 PRK00650 4-diphosphocytidyl-2- 99.8 1.1E-16 2.4E-21 172.0 23.8 247 531-856 3-256 (288)
48 KOG1322 GDP-mannose pyrophosph 99.7 6.6E-18 1.4E-22 177.3 8.3 203 1-271 118-334 (371)
49 PRK00725 glgC glucose-1-phosph 99.7 1.5E-16 3.2E-21 183.0 13.0 225 1-268 135-392 (425)
50 PRK05905 hypothetical protein; 99.7 5.1E-15 1.1E-19 157.1 20.9 243 531-842 3-254 (258)
51 PRK02862 glgC glucose-1-phosph 99.6 1.9E-15 4E-20 174.1 11.0 231 1-268 122-392 (429)
52 PRK04181 4-diphosphocytidyl-2- 99.6 4.8E-14 1E-18 150.4 18.1 177 531-751 3-185 (257)
53 PRK00844 glgC glucose-1-phosph 99.6 8.6E-15 1.9E-19 167.7 12.4 224 1-268 123-380 (407)
54 COG1685 Archaeal shikimate kin 99.5 3E-12 6.4E-17 132.2 25.7 215 610-870 51-269 (278)
55 PLN02241 glucose-1-phosphate a 99.5 2.4E-14 5.1E-19 165.4 11.4 230 1-267 128-398 (436)
56 TIGR01240 mevDPdecarb diphosph 99.5 9.5E-12 2.1E-16 135.9 24.9 223 612-857 68-303 (305)
57 TIGR02091 glgC glucose-1-phosp 99.5 1.9E-13 4.2E-18 154.2 12.2 214 1-268 117-359 (361)
58 PRK05293 glgC glucose-1-phosph 99.5 2.9E-13 6.3E-18 153.9 12.3 216 1-267 123-356 (380)
59 COG3890 ERG8 Phosphomevalonate 99.5 5.6E-11 1.2E-15 122.2 27.2 199 644-857 107-317 (337)
60 COG1907 Predicted archaeal sug 99.4 1.5E-10 3.3E-15 120.7 27.1 221 631-869 70-303 (312)
61 PF00288 GHMP_kinases_N: GHMP 99.4 1E-12 2.2E-17 111.1 8.1 67 634-701 1-67 (67)
62 COG4542 PduX Protein involved 99.3 1.2E-10 2.6E-15 118.8 16.3 198 627-856 78-279 (293)
63 TIGR02092 glgD glucose-1-phosp 99.3 3.1E-11 6.8E-16 136.7 13.2 214 1-268 120-353 (369)
64 COG1829 Predicted archaeal kin 99.2 5.9E-09 1.3E-13 108.6 27.9 203 630-867 72-276 (283)
65 PF08544 GHMP_kinases_C: GHMP 99.1 1.1E-10 2.4E-15 103.2 8.2 81 777-857 1-82 (85)
66 COG3407 MVD1 Mevalonate pyroph 99.1 4.5E-08 9.8E-13 106.0 25.1 225 611-858 72-308 (329)
67 PLN02407 diphosphomevalonate d 99.0 2.5E-08 5.4E-13 108.9 22.2 207 634-857 105-330 (343)
68 TIGR01208 rmlA_long glucose-1- 99.0 2.2E-09 4.7E-14 120.9 12.9 181 1-246 104-302 (353)
69 KOG4519 Phosphomevalonate kina 99.0 2.7E-07 5.8E-12 97.4 24.8 206 643-857 151-433 (459)
70 COG1208 GCD1 Nucleoside-diphos 98.8 4.7E-09 1E-13 118.1 7.4 204 1-249 105-319 (358)
71 PF10509 GalKase_gal_bdg: Gala 98.8 7.9E-09 1.7E-13 82.0 5.3 38 529-576 14-51 (52)
72 PRK09451 glmU bifunctional N-a 98.8 3E-08 6.6E-13 115.6 11.1 201 2-249 103-323 (456)
73 PRK14358 glmU bifunctional N-a 98.6 5.4E-08 1.2E-12 114.1 8.2 74 2-93 106-185 (481)
74 PRK14355 glmU bifunctional N-a 98.6 5.3E-08 1.2E-12 113.7 7.0 202 2-249 103-326 (459)
75 KOG1461 Translation initiation 98.5 6.2E-07 1.3E-11 102.6 11.5 52 198-249 339-390 (673)
76 KOG2833 Mevalonate pyrophospha 98.5 1.5E-05 3.3E-10 84.2 20.3 191 632-842 105-316 (395)
77 PRK14356 glmU bifunctional N-a 98.5 5.3E-07 1.1E-11 105.2 10.7 81 2-99 105-189 (456)
78 KOG1537 Homoserine kinase [Ami 98.5 4.6E-07 1E-11 92.9 8.4 200 632-854 94-327 (355)
79 PRK14360 glmU bifunctional N-a 98.4 5.3E-07 1.1E-11 105.0 9.5 65 17-99 122-186 (450)
80 PRK14352 glmU bifunctional N-a 98.4 1.6E-06 3.5E-11 101.9 11.6 81 2-100 106-192 (482)
81 PRK14357 glmU bifunctional N-a 98.4 2.4E-06 5.2E-11 99.5 12.9 78 2-99 96-179 (448)
82 PRK14353 glmU bifunctional N-a 98.3 2.4E-06 5.2E-11 99.5 11.7 196 17-249 126-344 (446)
83 PRK14359 glmU bifunctional N-a 98.3 2.4E-06 5.2E-11 98.9 10.6 199 17-248 117-336 (430)
84 TIGR01173 glmU UDP-N-acetylglu 98.3 3.5E-06 7.6E-11 98.1 11.0 80 2-99 98-181 (451)
85 KOG1460 GDP-mannose pyrophosph 98.2 6.8E-06 1.5E-10 86.2 10.5 215 3-249 115-363 (407)
86 KOG1462 Translation initiation 98.1 3.3E-06 7.2E-11 91.7 6.5 74 176-249 335-408 (433)
87 PRK14354 glmU bifunctional N-a 98.1 1.9E-05 4.1E-10 92.3 12.4 65 17-99 121-185 (458)
88 cd06428 M1P_guanylylT_A_like_N 98.0 4.2E-06 9.2E-11 90.0 4.3 77 1-97 109-190 (257)
89 PF00483 NTP_transferase: Nucl 98.0 3.5E-06 7.7E-11 89.7 2.6 80 1-99 109-192 (248)
90 cd04652 LbH_eIF2B_gamma_C eIF- 97.9 2.1E-05 4.6E-10 68.8 6.1 51 199-249 23-73 (81)
91 cd04651 LbH_G1P_AT_C Glucose-1 97.9 2.6E-05 5.6E-10 71.9 6.8 69 189-268 9-77 (104)
92 COG1209 RfbA dTDP-glucose pyro 97.8 4.1E-05 8.9E-10 80.5 7.6 73 2-96 106-182 (286)
93 KOG1461 Translation initiation 97.7 2.7E-05 5.8E-10 89.5 5.1 233 1-268 132-417 (673)
94 cd03356 LbH_G1P_AT_C_like Left 97.6 0.00012 2.7E-09 63.5 6.3 58 201-268 8-65 (79)
95 cd04652 LbH_eIF2B_gamma_C eIF- 97.6 0.00013 2.9E-09 63.8 6.0 59 200-268 7-65 (81)
96 KOG1462 Translation initiation 97.5 0.00017 3.8E-09 78.7 7.3 106 151-266 279-398 (433)
97 cd06425 M1P_guanylylT_B_like_N 97.5 7.5E-05 1.6E-09 79.0 3.3 75 1-97 107-186 (233)
98 cd05787 LbH_eIF2B_epsilon eIF- 97.4 0.00029 6.3E-09 60.9 6.2 59 200-268 7-65 (79)
99 cd04651 LbH_G1P_AT_C Glucose-1 97.4 0.0006 1.3E-08 62.8 7.6 57 201-268 4-60 (104)
100 cd03356 LbH_G1P_AT_C_like Left 97.3 0.00045 9.7E-09 60.0 6.1 58 192-249 16-74 (79)
101 TIGR01099 galU UTP-glucose-1-p 97.2 0.00019 4.1E-09 77.2 2.5 80 1-99 125-215 (260)
102 cd05824 LbH_M1P_guanylylT_C Ma 97.2 0.0011 2.5E-08 57.7 6.9 56 203-268 10-66 (80)
103 TIGR02623 G1P_cyt_trans glucos 97.1 0.00039 8.5E-09 74.7 3.7 72 1-99 124-199 (254)
104 PRK15480 glucose-1-phosphate t 97.0 0.00084 1.8E-08 73.6 5.5 73 2-96 109-186 (292)
105 PRK05293 glgC glucose-1-phosph 96.9 0.0011 2.4E-08 75.5 5.7 104 153-269 231-341 (380)
106 cd04181 NTP_transferase NTP_tr 96.9 0.0012 2.6E-08 68.5 5.0 76 1-99 102-181 (217)
107 COG1207 GlmU N-acetylglucosami 96.8 0.016 3.5E-07 64.7 13.4 65 18-101 125-190 (460)
108 cd04197 eIF-2B_epsilon_N The N 96.8 0.00081 1.8E-08 70.4 2.9 84 1-93 110-216 (217)
109 cd02509 GDP-M1P_Guanylyltransf 96.8 0.0012 2.6E-08 71.8 4.3 92 1-101 109-209 (274)
110 TIGR01207 rmlA glucose-1-phosp 96.7 0.0014 3.1E-08 71.6 4.5 75 2-99 105-184 (286)
111 PRK00844 glgC glucose-1-phosph 96.6 0.0058 1.3E-07 70.4 8.9 52 206-268 312-363 (407)
112 cd05787 LbH_eIF2B_epsilon eIF- 96.6 0.0046 9.9E-08 53.4 5.8 47 196-242 20-66 (79)
113 cd02541 UGPase_prokaryotic Pro 96.4 0.0021 4.6E-08 69.4 2.9 82 1-98 125-214 (267)
114 PRK00725 glgC glucose-1-phosph 96.3 0.0041 8.9E-08 72.0 4.9 54 205-269 323-376 (425)
115 PRK13389 UTP--glucose-1-phosph 96.3 0.0033 7.1E-08 69.4 3.7 83 1-99 134-229 (302)
116 cd02538 G1P_TT_short G1P_TT_sh 96.2 0.0039 8.5E-08 66.2 3.9 76 1-99 105-185 (240)
117 TIGR02092 glgD glucose-1-phosp 96.1 0.0067 1.4E-07 68.9 5.5 98 161-270 233-338 (369)
118 cd05636 LbH_G1P_TT_C_like Puta 96.1 0.0091 2E-07 59.6 5.6 60 201-270 44-104 (163)
119 cd05824 LbH_M1P_guanylylT_C Ma 96.1 0.011 2.5E-07 51.4 5.5 45 199-243 24-68 (80)
120 COG0448 GlgC ADP-glucose pyrop 96.1 0.012 2.6E-07 65.7 6.9 76 198-276 285-363 (393)
121 TIGR02091 glgC glucose-1-phosp 96.1 0.041 9E-07 62.2 11.6 107 151-269 229-343 (361)
122 TIGR03308 phn_thr-fam phosphon 96.1 0.011 2.3E-07 61.5 6.2 58 201-268 11-68 (204)
123 cd02524 G1P_cytidylyltransfera 96.0 0.0067 1.4E-07 65.1 4.7 70 1-95 124-197 (253)
124 TIGR01105 galF UTP-glucose-1-p 95.8 0.0092 2E-07 65.7 4.7 79 2-96 130-224 (297)
125 PRK02862 glgC glucose-1-phosph 95.8 0.018 3.9E-07 66.8 7.2 93 152-247 245-345 (429)
126 PRK10122 GalU regulator GalF; 95.8 0.0083 1.8E-07 66.1 4.1 81 2-98 130-226 (297)
127 cd04745 LbH_paaY_like paaY-lik 95.6 0.018 3.9E-07 57.0 5.5 40 210-249 40-84 (155)
128 PLN02472 uncharacterized prote 95.6 0.017 3.8E-07 61.5 5.4 32 210-241 127-158 (246)
129 TIGR02287 PaaY phenylacetic ac 95.5 0.023 4.9E-07 58.4 5.8 40 210-249 48-92 (192)
130 cd06915 NTP_transferase_WcbM_l 95.4 0.015 3.2E-07 60.6 4.1 75 1-97 102-180 (223)
131 PLN02296 carbonate dehydratase 95.4 0.025 5.3E-07 61.2 5.9 49 210-268 92-151 (269)
132 cd06422 NTP_transferase_like_1 95.3 0.02 4.3E-07 59.9 4.7 73 1-98 103-181 (221)
133 cd00208 LbetaH Left-handed par 95.3 0.048 1E-06 46.4 6.3 41 202-242 10-60 (78)
134 cd04650 LbH_FBP Ferripyochelin 95.1 0.084 1.8E-06 52.3 8.3 49 201-249 27-84 (154)
135 cd04645 LbH_gamma_CA_like Gamm 95.1 0.042 9.1E-07 54.2 6.1 39 211-249 40-83 (153)
136 cd04189 G1P_TT_long G1P_TT_lon 95.0 0.025 5.3E-07 59.7 4.5 73 1-96 104-180 (236)
137 cd05636 LbH_G1P_TT_C_like Puta 95.0 0.055 1.2E-06 53.9 6.7 53 196-248 57-109 (163)
138 cd00710 LbH_gamma_CA Gamma car 94.9 0.052 1.1E-06 54.5 6.3 40 210-249 83-122 (167)
139 cd04745 LbH_paaY_like paaY-lik 94.9 0.044 9.5E-07 54.2 5.5 51 199-249 46-102 (155)
140 TIGR01208 rmlA_long glucose-1- 94.9 0.036 7.7E-07 62.5 5.5 42 209-250 248-289 (353)
141 TIGR01173 glmU UDP-N-acetylglu 94.8 0.046 1E-06 63.7 6.3 49 201-249 270-319 (451)
142 TIGR01479 GMP_PMI mannose-1-ph 94.7 0.032 6.9E-07 65.4 4.8 93 1-101 110-211 (468)
143 cd04645 LbH_gamma_CA_like Gamm 94.7 0.061 1.3E-06 53.0 6.0 51 199-249 45-101 (153)
144 TIGR02287 PaaY phenylacetic ac 94.6 0.038 8.2E-07 56.8 4.3 42 208-249 68-110 (192)
145 PRK14356 glmU bifunctional N-a 94.5 0.041 8.8E-07 64.3 4.9 41 209-249 287-327 (456)
146 cd03353 LbH_GlmU_C N-acetyl-gl 94.4 0.069 1.5E-06 54.7 5.9 49 200-248 41-90 (193)
147 PF00132 Hexapep: Bacterial tr 94.4 0.025 5.4E-07 41.2 1.8 35 209-243 1-36 (36)
148 PRK13627 carnitine operon prot 94.3 0.082 1.8E-06 54.5 6.2 39 211-249 51-94 (196)
149 PLN02241 glucose-1-phosphate a 94.3 0.045 9.7E-07 63.7 4.7 45 201-246 307-351 (436)
150 PLN02296 carbonate dehydratase 94.2 0.065 1.4E-06 58.0 5.2 41 209-249 119-160 (269)
151 cd06426 NTP_transferase_like_2 94.1 0.052 1.1E-06 56.6 4.3 70 1-95 101-174 (220)
152 cd02507 eIF-2B_gamma_N_like Th 94.0 0.024 5.2E-07 59.3 1.5 87 1-93 109-215 (216)
153 PLN02472 uncharacterized prote 93.8 0.088 1.9E-06 56.2 5.3 48 210-267 99-157 (246)
154 PRK09451 glmU bifunctional N-a 93.8 0.071 1.5E-06 62.4 5.0 39 211-249 267-306 (456)
155 cd03353 LbH_GlmU_C N-acetyl-gl 93.6 0.19 4E-06 51.6 7.3 48 201-248 59-107 (193)
156 cd03359 LbH_Dynactin_5 Dynacti 93.5 0.14 3.1E-06 51.0 6.0 39 210-248 73-112 (161)
157 PRK13627 carnitine operon prot 93.5 0.075 1.6E-06 54.8 4.1 43 207-249 69-112 (196)
158 TIGR03308 phn_thr-fam phosphon 93.4 0.19 4.2E-06 52.2 7.0 50 195-244 22-71 (204)
159 cd04183 GT2_BcE_like GT2_BcbE_ 93.3 0.097 2.1E-06 55.0 4.7 74 1-99 104-182 (231)
160 cd03358 LbH_WxcM_N_like WcxM-l 93.3 0.21 4.4E-06 46.7 6.4 39 209-247 16-55 (119)
161 cd05635 LbH_unknown Uncharacte 93.2 0.13 2.8E-06 47.2 4.6 47 210-268 48-94 (101)
162 cd03360 LbH_AT_putative Putati 93.1 0.2 4.3E-06 50.6 6.4 32 210-241 109-141 (197)
163 cd04650 LbH_FBP Ferripyochelin 93.1 0.19 4.2E-06 49.7 6.1 50 199-248 46-101 (154)
164 cd04646 LbH_Dynactin_6 Dynacti 93.1 0.18 3.9E-06 50.5 5.9 38 212-249 69-107 (164)
165 cd00208 LbetaH Left-handed par 92.9 0.19 4.1E-06 42.6 5.1 37 210-246 1-38 (78)
166 cd03358 LbH_WxcM_N_like WcxM-l 92.7 0.14 3E-06 47.9 4.3 6 260-265 74-79 (119)
167 PRK14359 glmU bifunctional N-a 92.7 0.17 3.6E-06 58.7 5.9 50 199-249 272-321 (430)
168 PRK14360 glmU bifunctional N-a 92.6 0.16 3.5E-06 59.2 5.6 61 188-249 293-354 (450)
169 TIGR03532 DapD_Ac 2,3,4,5-tetr 92.5 0.14 3E-06 54.3 4.4 34 210-243 117-151 (231)
170 PRK14354 glmU bifunctional N-a 92.1 0.24 5.2E-06 57.9 6.3 49 200-249 291-340 (458)
171 PRK14358 glmU bifunctional N-a 91.9 0.19 4.2E-06 59.2 5.2 40 210-249 289-328 (481)
172 cd02523 PC_cytidylyltransferas 91.9 0.12 2.7E-06 54.2 3.2 79 1-99 99-178 (229)
173 PRK14355 glmU bifunctional N-a 91.9 0.27 5.9E-06 57.6 6.4 40 210-249 269-309 (459)
174 TIGR00965 dapD 2,3,4,5-tetrahy 91.9 0.24 5.3E-06 53.1 5.4 32 210-241 124-156 (269)
175 cd03359 LbH_Dynactin_5 Dynacti 91.9 0.32 6.8E-06 48.5 5.9 49 210-268 43-104 (161)
176 cd03357 LbH_MAT_GAT Maltose O- 91.9 0.22 4.8E-06 50.0 4.9 32 215-246 118-151 (169)
177 cd04649 LbH_THP_succinylT_puta 91.8 0.66 1.4E-05 45.2 7.8 38 204-242 36-83 (147)
178 TIGR00965 dapD 2,3,4,5-tetrahy 91.4 0.32 7E-06 52.2 5.6 40 210-249 148-197 (269)
179 PRK14353 glmU bifunctional N-a 91.4 0.32 6.9E-06 56.7 6.2 41 209-249 286-327 (446)
180 cd00710 LbH_gamma_CA Gamma car 91.2 0.59 1.3E-05 46.8 7.1 40 210-249 65-105 (167)
181 cd03360 LbH_AT_putative Putati 91.2 0.28 6.1E-06 49.4 4.9 30 212-241 117-147 (197)
182 cd04646 LbH_Dynactin_6 Dynacti 90.9 0.42 9E-06 47.8 5.6 40 210-249 39-89 (164)
183 cd05635 LbH_unknown Uncharacte 90.9 0.3 6.4E-06 44.7 4.2 42 204-245 57-98 (101)
184 PF14602 Hexapep_2: Hexapeptid 90.7 0.3 6.4E-06 35.3 3.1 31 211-242 3-33 (34)
185 cd04647 LbH_MAT_like Maltose O 90.6 0.57 1.2E-05 42.8 5.8 17 210-226 22-38 (109)
186 COG0663 PaaY Carbonic anhydras 89.9 0.74 1.6E-05 46.2 6.3 39 211-249 74-113 (176)
187 TIGR01853 lipid_A_lpxD UDP-3-O 89.6 0.39 8.6E-06 53.5 4.7 34 209-242 139-173 (324)
188 cd03350 LbH_THP_succinylT 2,3, 89.4 0.74 1.6E-05 44.6 5.8 50 209-268 49-108 (139)
189 cd02540 GT2_GlmU_N_bac N-termi 89.4 0.37 8.1E-06 50.4 4.1 65 17-99 118-182 (229)
190 PRK11830 dapD 2,3,4,5-tetrahyd 89.1 0.57 1.2E-05 50.6 5.3 14 228-241 178-191 (272)
191 COG1208 GCD1 Nucleoside-diphos 89.0 0.64 1.4E-05 52.6 5.9 41 209-249 261-302 (358)
192 TIGR03570 NeuD_NnaD sugar O-ac 88.7 0.54 1.2E-05 47.9 4.7 14 211-224 113-126 (201)
193 cd03352 LbH_LpxD UDP-3-O-acyl- 88.6 0.63 1.4E-05 48.1 5.0 9 260-268 62-70 (205)
194 PLN02694 serine O-acetyltransf 88.5 0.96 2.1E-05 49.2 6.4 22 227-248 213-235 (294)
195 TIGR01853 lipid_A_lpxD UDP-3-O 88.3 0.49 1.1E-05 52.8 4.2 49 210-268 122-172 (324)
196 TIGR03570 NeuD_NnaD sugar O-ac 88.1 0.8 1.7E-05 46.6 5.4 33 210-242 118-151 (201)
197 TIGR03532 DapD_Ac 2,3,4,5-tetr 88.1 0.49 1.1E-05 50.1 3.9 49 209-267 134-192 (231)
198 PRK10092 maltose O-acetyltrans 87.7 0.64 1.4E-05 47.4 4.3 28 214-241 128-156 (183)
199 PRK14357 glmU bifunctional N-a 87.3 0.77 1.7E-05 53.5 5.3 22 78-99 90-112 (448)
200 PLN02357 serine acetyltransfer 86.4 1.1 2.5E-05 50.0 5.6 23 227-249 279-302 (360)
201 COG0663 PaaY Carbonic anhydras 86.1 1.4 3E-05 44.3 5.5 67 198-284 78-145 (176)
202 TIGR01172 cysE serine O-acetyl 85.7 1.4 3E-05 44.0 5.4 31 211-241 115-146 (162)
203 COG1210 GalU UDP-glucose pyrop 85.6 1 2.2E-05 48.2 4.5 83 2-97 130-218 (291)
204 PRK05289 UDP-N-acetylglucosami 85.4 1.6 3.4E-05 47.2 6.1 16 210-225 81-96 (262)
205 TIGR01172 cysE serine O-acetyl 85.4 1.1 2.4E-05 44.6 4.6 40 210-249 88-137 (162)
206 COG1207 GlmU N-acetylglucosami 85.4 0.67 1.5E-05 52.3 3.2 41 209-249 286-326 (460)
207 PRK10502 putative acyl transfe 85.2 1.3 2.8E-05 45.1 5.0 6 299-304 166-171 (182)
208 cd04649 LbH_THP_succinylT_puta 85.1 1.5 3.2E-05 42.9 5.0 42 201-242 16-63 (147)
209 COG1044 LpxD UDP-3-O-[3-hydrox 84.5 1.5 3.2E-05 48.3 5.3 9 260-268 172-180 (338)
210 PLN02694 serine O-acetyltransf 84.0 1.1 2.3E-05 48.9 3.9 37 207-243 210-247 (294)
211 PRK10191 putative acyl transfe 83.8 1.6 3.4E-05 42.8 4.7 39 211-249 69-116 (146)
212 PRK05450 3-deoxy-manno-octulos 83.6 1.8 3.9E-05 45.8 5.6 70 17-99 119-194 (245)
213 PRK12461 UDP-N-acetylglucosami 83.5 1.7 3.6E-05 46.8 5.2 33 210-242 24-57 (255)
214 PRK11830 dapD 2,3,4,5-tetrahyd 83.4 1.7 3.8E-05 47.0 5.3 44 201-244 118-168 (272)
215 PRK00892 lpxD UDP-3-O-[3-hydro 83.4 1.2 2.7E-05 50.0 4.4 10 58-67 39-48 (343)
216 cd03357 LbH_MAT_GAT Maltose O- 83.1 3 6.5E-05 41.8 6.6 39 211-249 84-142 (169)
217 cd03352 LbH_LpxD UDP-3-O-acyl- 83.0 1.5 3.3E-05 45.2 4.6 11 214-224 36-46 (205)
218 PRK00892 lpxD UDP-3-O-[3-hydro 82.8 1.7 3.6E-05 49.0 5.1 13 229-241 169-181 (343)
219 cd03354 LbH_SAT Serine acetylt 82.7 1.5 3.2E-05 39.8 3.8 31 213-243 38-71 (101)
220 PRK10092 maltose O-acetyltrans 82.3 2.4 5.1E-05 43.3 5.5 39 211-249 95-153 (183)
221 PRK05289 UDP-N-acetylglucosami 81.9 2.6 5.7E-05 45.5 6.0 35 210-244 51-98 (262)
222 PLN02739 serine acetyltransfer 81.3 1.8 3.8E-05 48.2 4.4 40 210-249 232-281 (355)
223 COG0836 {ManC} Mannose-1-phosp 80.9 1.7 3.6E-05 47.6 4.0 64 33-102 151-214 (333)
224 PLN02357 serine acetyltransfer 80.8 3.5 7.7E-05 46.2 6.6 28 212-239 229-259 (360)
225 TIGR01852 lipid_A_lpxA acyl-[a 80.8 3.1 6.6E-05 44.7 6.0 14 211-224 78-91 (254)
226 PRK14352 glmU bifunctional N-a 80.5 2.4 5.1E-05 50.1 5.5 49 198-247 295-344 (482)
227 PF14602 Hexapep_2: Hexapeptid 80.3 2.2 4.8E-05 30.8 3.2 30 228-268 3-32 (34)
228 cd03351 LbH_UDP-GlcNAc_AT UDP- 80.1 2.7 5.9E-05 45.1 5.3 34 210-243 48-94 (254)
229 PRK12461 UDP-N-acetylglucosami 80.0 2.1 4.6E-05 46.1 4.4 32 211-242 31-63 (255)
230 COG2171 DapD Tetrahydrodipicol 79.7 4.1 8.9E-05 43.5 6.2 39 211-249 158-206 (271)
231 PRK11132 cysE serine acetyltra 79.4 2.6 5.5E-05 45.7 4.8 34 210-243 168-210 (273)
232 cd05825 LbH_wcaF_like wcaF-lik 79.3 4.3 9.3E-05 37.3 5.7 14 211-224 25-38 (107)
233 cd03351 LbH_UDP-GlcNAc_AT UDP- 79.3 2 4.4E-05 46.1 4.1 32 211-242 31-63 (254)
234 TIGR01852 lipid_A_lpxA acyl-[a 78.5 3.7 8.1E-05 44.1 5.8 36 209-244 46-94 (254)
235 PLN02739 serine acetyltransfer 78.0 2.5 5.4E-05 47.0 4.3 31 211-241 259-290 (355)
236 PRK09527 lacA galactoside O-ac 77.4 4.9 0.00011 41.7 6.0 15 211-225 97-111 (203)
237 PF00132 Hexapep: Bacterial tr 77.1 2 4.4E-05 30.9 2.3 26 216-241 2-28 (36)
238 TIGR03535 DapD_actino 2,3,4,5- 76.9 3.7 7.9E-05 44.8 5.0 30 227-267 226-255 (319)
239 PRK10502 putative acyl transfe 75.9 3.7 7.9E-05 41.8 4.6 34 209-242 71-107 (182)
240 cd02517 CMP-KDO-Synthetase CMP 75.7 4.8 0.0001 42.4 5.7 68 18-99 120-191 (239)
241 TIGR02353 NRPS_term_dom non-ri 75.6 5.8 0.00013 49.0 7.0 16 211-226 618-633 (695)
242 PRK11132 cysE serine acetyltra 75.5 3.4 7.4E-05 44.8 4.4 34 209-242 193-227 (273)
243 cd03350 LbH_THP_succinylT 2,3, 75.1 4 8.7E-05 39.4 4.4 33 211-243 33-66 (139)
244 PRK09677 putative lipopolysacc 74.9 6.5 0.00014 40.3 6.2 31 212-242 68-101 (192)
245 TIGR03536 DapD_gpp 2,3,4,5-tet 74.8 4.1 8.9E-05 44.7 4.7 32 209-241 224-259 (341)
246 KOG1322 GDP-mannose pyrophosph 74.1 2.1 4.6E-05 46.8 2.4 79 161-249 224-305 (371)
247 TIGR03536 DapD_gpp 2,3,4,5-tet 73.9 7.1 0.00015 42.9 6.2 49 210-268 185-239 (341)
248 KOG1460 GDP-mannose pyrophosph 73.5 4.3 9.3E-05 43.8 4.4 39 211-249 308-346 (407)
249 PF07959 Fucokinase: L-fucokin 73.1 5.5 0.00012 46.1 5.6 50 215-274 273-322 (414)
250 cd05825 LbH_wcaF_like wcaF-lik 72.4 8.4 0.00018 35.3 5.7 32 211-242 5-39 (107)
251 COG1044 LpxD UDP-3-O-[3-hydrox 71.4 4.7 0.0001 44.5 4.3 29 213-241 151-180 (338)
252 COG1043 LpxA Acyl-[acyl carrie 68.1 6.4 0.00014 41.4 4.2 25 212-241 18-42 (260)
253 PRK10191 putative acyl transfe 65.7 14 0.00031 36.2 5.9 34 211-244 94-128 (146)
254 cd03349 LbH_XAT Xenobiotic acy 65.3 6.5 0.00014 38.5 3.5 36 208-243 72-108 (145)
255 PRK15460 cpsB mannose-1-phosph 65.2 9.6 0.00021 44.8 5.5 77 21-102 144-221 (478)
256 PRK09677 putative lipopolysacc 65.2 9.5 0.00021 39.1 4.9 34 210-243 131-165 (192)
257 cd03349 LbH_XAT Xenobiotic acy 64.0 13 0.00029 36.3 5.4 25 225-249 72-97 (145)
258 cd03354 LbH_SAT Serine acetylt 62.6 9.2 0.0002 34.5 3.8 35 208-242 53-88 (101)
259 PRK09527 lacA galactoside O-ac 62.6 12 0.00026 38.9 5.0 34 209-242 75-111 (203)
260 TIGR02353 NRPS_term_dom non-ri 61.2 14 0.00031 45.6 6.2 22 228-249 162-184 (695)
261 cd04198 eIF-2B_gamma_N The N-t 60.4 6.4 0.00014 40.9 2.6 45 1-45 107-166 (214)
262 TIGR03535 DapD_actino 2,3,4,5- 58.3 22 0.00047 39.0 6.1 50 207-268 191-250 (319)
263 COG1045 CysE Serine acetyltran 50.3 19 0.00041 36.8 3.9 33 209-241 119-152 (194)
264 KOG3121 Dynactin, subunit p25 49.7 11 0.00024 36.2 2.1 35 211-245 86-126 (184)
265 cd02508 ADP_Glucose_PP ADP-glu 49.2 7.3 0.00016 39.9 0.9 18 82-99 147-164 (200)
266 COG4801 Predicted acyltransfer 46.5 33 0.00072 35.9 5.0 39 211-249 18-56 (277)
267 COG0110 WbbJ Acetyltransferase 46.2 21 0.00045 36.1 3.6 46 215-272 124-171 (190)
268 COG1043 LpxA Acyl-[acyl carrie 43.4 25 0.00055 37.1 3.6 35 209-243 27-62 (260)
269 PF06058 DCP1: Dcp1-like decap 43.1 17 0.00038 34.5 2.3 86 5-98 30-115 (122)
270 COG1045 CysE Serine acetyltran 40.9 40 0.00086 34.6 4.5 18 228-245 121-138 (194)
271 PRK13368 3-deoxy-manno-octulos 35.7 46 0.00099 34.9 4.4 64 19-97 120-187 (238)
272 COG0110 WbbJ Acetyltransferase 34.7 47 0.001 33.5 4.1 32 212-243 127-159 (190)
273 KOG3121 Dynactin, subunit p25 33.4 26 0.00056 33.9 1.7 24 226-249 84-107 (184)
274 KOG4042 Dynactin subunit p27/W 31.7 52 0.0011 32.1 3.5 35 209-243 20-58 (190)
275 COG2171 DapD Tetrahydrodipicol 27.5 63 0.0014 34.8 3.6 39 204-242 167-210 (271)
276 KOG4042 Dynactin subunit p27/W 22.9 80 0.0017 30.9 3.0 27 216-242 9-36 (190)
277 PRK13412 fkp bifunctional fuco 21.2 1.1E+02 0.0023 39.3 4.6 56 216-272 326-382 (974)
278 COG4801 Predicted acyltransfer 20.5 1.2E+02 0.0026 31.9 4.0 56 203-267 27-82 (277)
No 1
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=100.00 E-value=1.1e-132 Score=1190.10 Aligned_cols=785 Identities=26% Similarity=0.391 Sum_probs=680.1
Q ss_pred CCCCeeeccCCCcCcCCCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCcc
Q 002861 1 MTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRA 80 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~ 80 (873)
+||||+++||.++|.+|++|++|+++|+++++|++||||++|++.|+ ++++||||||.++| +++++++.+
T Consensus 158 ~~gDv~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~-------~~~~~LqKps~eel---~a~~~~~~~ 227 (974)
T PRK13412 158 ASGDVYIRSEQPLQDIPEADVVCYGLWVDPSLATNHGVFVSSRKSPE-------RLDFMLQKPSLEEL---GGLSKTHLF 227 (974)
T ss_pred EecchhhhccccccCCCccCeEEEEeccChhhccCceEEEeCCCChH-------HHHHHhcCCCHHHH---HhhhcCCeE
Confidence 58999999999999999999999999999999999999999999653 57999999999999 579999999
Q ss_pred ceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhcccccccccccCC-CchhHHhhhhcCcceEEEe
Q 002861 81 LLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRP-LGKELVSKLGKQRMFSYCA 159 (873)
Q Consensus 81 l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~~~~~~~Y~~~~p-vgd~~~~~l~~~~i~~~~~ 159 (873)
++|+|+|+|++++++.|++..+. +..+..|+||+|+||++|||+ +| ..|..|+.++ +-.+++
T Consensus 228 l~D~g~~~~~~~a~~~L~~~~~~------~~~~~~~~~dlY~Df~~aLg~--------~~~~~~~el~~l~---~~i~~L 290 (974)
T PRK13412 228 LMDIGIWLLSDRAVELLMKRSGK------EDGGKLKYYDLYSDFGLALGT--------HPRIGDDELNALS---VAILPL 290 (974)
T ss_pred EEeeeEEEEChHHHHHHHHhhhc------ccCCcceeeehHHHHHHhcCC--------CCCcchhhhcccc---eEEEEc
Confidence 99999999999999999975432 223558999999999999974 22 1244555444 448999
Q ss_pred cCceeEEecCcHHHHh------hhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeCCC-cEEEEceeCCC
Q 002861 160 YELLFLHFGTSSEVLD------HLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGED-SLIYDSNISSG 232 (873)
Q Consensus 160 p~a~F~h~gt~~e~l~------~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~-s~Ve~s~l~~~ 232 (873)
++++||||||++|||+ +++.+|++++++++ ++. +.++|+||+++++++++++ .|||||+|+++
T Consensus 291 ~~~~F~H~GTs~E~l~~~~~~q~~~~~~~~i~~~~~-~~~---------~~~~v~ns~~~~~~s~~~~s~~vE~s~l~~~ 360 (974)
T PRK13412 291 PGGEFYHYGTSRELISSTLAVQNLVTDQRRIMHRKV-KPH---------PAMFVQNAVLSGKLTAENATLWIENSHVGEG 360 (974)
T ss_pred CCceeEEecCcHHHhcCchhHHHHhhhhhhhhcccc-CCC---------CceEEEeeEecCCcccCCCeEEEEeeEecCC
Confidence 9999999999999999 67777777766652 222 2368999999999999998 55999999999
Q ss_pred eEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeeeeeecCcceEEEEEeccCCCCCCCCCCCC-cccCcchHHHHHH
Q 002861 233 IQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDG-TFCGKPWQKVWHD 311 (873)
Q Consensus 233 v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~v~l~~~~~~v~~~~G~~D~~k~~~~~~~-t~~g~~~~~~l~~ 311 (873)
|+||++|||+||+ +|+|+++||+|+|+|.||+ ++..||+|+||++||||++++++. +|||+||.+||+.
T Consensus 361 ~~ig~~~Iisgv~---------~~~~~~~vP~~~ci~~vpl-~~~~~v~r~ygi~D~~K~s~~~~~~~~~G~~~~~~l~~ 430 (974)
T PRK13412 361 WKLASRSIITGVP---------ENSWNLDLPEGVCIDVVPV-GDRGFVARPYGLDDVFKGALADGKTTWFGRPFLEWMEA 430 (974)
T ss_pred eEEcCCcEEeccc---------ccccceecCCCcEEEEEEc-CCCcEEEEEecCCcccccccccccCeecCccHHHHHHH
Confidence 9999999999997 4679999999999999999 789999999999999999997544 6999999999999
Q ss_pred hCCCccccccCCCCCccccccccccccccchhhHH-HHHHHhcCCCCCCCcccccccccccccHHHHhccCChHHHhhhc
Q 002861 312 LGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLT-LATWLMGLSDHKTGFLLPLWKNSRRVSLEELHRSIDFSEMCTGS 390 (873)
Q Consensus 312 ~gi~~~dlw~~~~~~~~~Lw~A~LFPv~~~~~~l~-~~~wm~~~~~~~~~~~~~~w~~~~r~S~~e~~~~~d~~~~~~~~ 390 (873)
|||+++|+|++ .+|||||+|||||++.|++. +++||++.....++ .++|++++|+|++|+++++|+++|+++|
T Consensus 431 ~gl~~~~l~~~----~~~Lw~A~LFPv~~~~e~~~~~~~~m~~~~~~~~~--~~lw~~~~r~S~~e~~~~~d~~~l~~~r 504 (974)
T PRK13412 431 RGLSWPDLKGR----TDDLQAAHLFPVVTSVEELGAVLRWMLSEPSLEEG--KEIWLRSEKLSADEISAYANLARLYAQR 504 (974)
T ss_pred cCCCHHHhcCC----ccchhccccccccCcHHHHHHHHHHHhhccccccc--hhhhcccceecHHHHhhccCHHHHHHHH
Confidence 99999999953 48999999999999999976 89999986544444 5789999999999999999999999999
Q ss_pred chhhhhhhHHHHHHHHhhhhhhhhhHHHHHHHhccCccchhhhHHHhhhcccccCCCCCCcc-hhhhHHHHHHHHHhcCc
Q 002861 391 SNHQADLAAGIAKACINYGMLGRNLSQLCEEILQKELSGVDICKDILDLCPRLQDQNSKILP-KSRAYQAQVDLLRACKE 469 (873)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 469 (873)
+ .+++.||+.+++|++++++||+++.+++.+.++..|..++.+..++|...+ .+|||++++..+ +|+
T Consensus 505 ~----------~~~~~~~~~l~~n~~~~~~~ql~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~ 572 (974)
T PRK13412 505 E----------AFRKANWRALAANHEKSVFYQLDLADAAEDFVRLLLDMPEILPEDAPLMLRIHNRMFRARILKL--SGA 572 (974)
T ss_pred H----------HHHHhhHHHHHHhhhhhhhhhhhHHHHHHHHHHhcCCCcccchhhcccccchhHHHHHHHHHHh--hcc
Confidence 8 667779999999999999999999999999999999988888888888888 889999986544 564
Q ss_pred hhhHhHHHHHHHHHhHHHHHHHHhhccccccccccccccccccccCCCCCCCCCCCCCeEEEEeceEEEeecccccCCCc
Q 002861 470 ETTASELEHKVWAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGFVDHPFQPRTVKVELPVRIDFAGGWSDTPPW 549 (873)
Q Consensus 470 ~~~~~~~e~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~aP~Rv~L~G~~tD~~~~ 549 (873)
. ....|+++|..+++++..+. ..+++. |..+.+.+|. +++++|+||||+|||||+|||
T Consensus 573 ~--~~~~~~~~f~~~~~~~~~~~--------~~~~~~-------~~~~v~~~~~-----~~~~aPgRVnLiGghTDtPpy 630 (974)
T PRK13412 573 R--YREEEQAAFRLLRDGLLDGA--------YPRKQT-------PKLEVYSDQI-----VWGRSPVRIDLAGGWTDTPPY 630 (974)
T ss_pred c--cchHHHHHHHHHHHHhhhcc--------cccccC-------CCcccccCcE-----EEEeCceEEeecccCcCCCcc
Confidence 3 34779999998888876544 333333 6777888885 888999999999999999999
Q ss_pred ccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCC-CceeeecCCCCCCCCCCCChhHHHHHHHHHhhhhhh---
Q 002861 550 SLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAG-NQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHE--- 625 (873)
Q Consensus 550 ~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~-~~~~~~~l~~l~~p~~~~~~~~~~kaal~~~~~~~~--- 625 (873)
++++||.|+|+||++++++|+.++++++++..|++.+.+. ....+.+.+++.++..+++|++|+|+|+...|+++.
T Consensus 631 ~~ynGG~VLn~AId~~g~~pi~v~v~~~~d~~irl~S~d~~~~~~v~~~~~l~~~~~~~~~~~~~K~al~~~G~~~~~~~ 710 (974)
T PRK13412 631 CLYSGGNVVNLAIELNGQPPLQVYVKPCSEPHIVLRSIDLGAMEVVRTNEELRDYKKVGSPFSIPKAALCLAGFAPRFSA 710 (974)
T ss_pred cCcCCcEEEEEEEeCCCCccEEEEEEECCCCeEEEEECCCCCceEEecchhhcccccccchHhhhhhhheeccccccccc
Confidence 9999999999999999999999999999888898877443 333445556666666678899999999987665541
Q ss_pred --------cccc-ccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChhhhhHh
Q 002861 626 --------KLIE-SMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIG 696 (873)
Q Consensus 626 --------~~~~-~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~~Dq~~ 696 (873)
.... ..|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|+.+++++|||||++
T Consensus 711 ~~~~~l~e~l~~~G~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~ 790 (974)
T PRK13412 711 ESYASLEEQLKAFGSGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYG 790 (974)
T ss_pred chhHHHHHHHHhcCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhh
Confidence 1111 2589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002861 697 GLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKN 776 (873)
Q Consensus 697 ~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~ 776 (873)
+++||+++++..++......++|++.+.+.+.+++.+++|+|||++|.|++++++|++++..+++.....+++|.+++.+
T Consensus 791 a~~GG~~~i~~~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~~iV~~Vv~~~~~~~~~~~~~l~~ig~La~e 870 (974)
T PRK13412 791 GVLPGVKLLQTGAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAKGILAEIVRSMFLNSTAHLQLLHEMKAHALD 870 (974)
T ss_pred HhcCCeEEEEecCCcccCcceeecCcchhhhhhccCcEEEEECCCeeeHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 99999999886654333345677776665566678899999999999999999999988887777777789999999999
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCCcchHHHHHHHHHh
Q 002861 777 GRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELRRMLEK 856 (873)
Q Consensus 777 ~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~ 856 (873)
+++||++||++.||++|+++|++++.|.+++++|.+++|++.++++++|+|+||||+|||+++++++++.+++++++|++
T Consensus 871 a~~ALe~gD~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~gAlGaKLTGAGGGGcvI~Lak~~~~a~~I~~~L~~ 950 (974)
T PRK13412 871 MYEAIQRGEFEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKDYTLGYKLPGAGGGGYLYMVAKDPGAAERIRKILTE 950 (974)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcCCcEEEecccCcccEEEEEECChhhHHHHHHHHHh
Confidence 99999999999999999999999999988899999999999998899999999999999999999888889999999998
Q ss_pred cCCCceEEE-EEeeccC
Q 002861 857 DSNFNSEVY-NWNIYLE 872 (873)
Q Consensus 857 ~~~~~v~v~-~~~i~~~ 872 (873)
.......+| +++++.+
T Consensus 951 ~~~~~~~~~~~~~l~~~ 967 (974)
T PRK13412 951 NAPNPRARFVDMSLSDK 967 (974)
T ss_pred cccCCceeEEEEEECCC
Confidence 766555555 8877654
No 2
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-88 Score=723.64 Aligned_cols=823 Identities=23% Similarity=0.313 Sum_probs=670.6
Q ss_pred CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861 17 PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE 96 (873)
Q Consensus 17 ~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ 96 (873)
+--+..++++|.++.+|.+|||+++|++| .|.++-+..+..+++. |+.++|++....|+++|+-...++
T Consensus 30 sfRga~~ial~gs~a~a~nhgV~lsDPqg---------lvldi~~Qgaeaeiqr--cvrpdgri~~~nGvVF~svesaer 98 (948)
T KOG4644|consen 30 SFRGALTIALEGSLADANNHGVLLSDPQG---------LVLDITLQGAEAEIQR--CVRPDGRIKGGNGVVFDSVESAER 98 (948)
T ss_pred hcCCceEEEcCCchhhhhceEEEEecCcc---------ceeeeeeccchhhhhc--ccCCCcccccCceEEEEeeechhh
Confidence 44677889999999999999999999999 8999999999999884 899999999999999999999999
Q ss_pred HHhhhcCC-----chhhhhhhccccchhhhHHHHhhcc--cccccccccCCC--c--h------------hHHhhhhcCc
Q 002861 97 LVMLSCSC-----PPMVSELLKSGKEMSLYEDLVAAWV--PAKHDWLMLRPL--G--K------------ELVSKLGKQR 153 (873)
Q Consensus 97 ll~~~~~~-----~d~g~d~~~~~~~~~~y~df~~~~~--~~~~~Y~~~~pv--g--d------------~~~~~l~~~~ 153 (873)
+|.||.++ .+.+.|..+.|.++++|+|++++.. .+++||.-.+|. | | .+|..++.+|
T Consensus 99 llathvsppldaCs~i~~dSgarpvqlslffdilHc~ae~V~redflvgrppelgqgdaD~agylqsaraqlWke~kdq~ 178 (948)
T KOG4644|consen 99 LLATHVSPPLDACSKIAADSGARPVQLSLFFDILHCGAEIVGREDFLVGRPPELGQGDADAAGYLQSARAQLWKEEKDQE 178 (948)
T ss_pred hhhcccCcchhhhhHhhcccCCCcchhhhhhhhhhhhhhcccchhhcccCCccccCCcchhhhHHHHHHHHHHHHhhcCc
Confidence 99999765 6788899999999999999999886 488999988773 3 3 2466688999
Q ss_pred ceEEEecCceeEEecC-cHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCC
Q 002861 154 MFSYCAYELLFLHFGT-SSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSG 232 (873)
Q Consensus 154 i~~~~~p~a~F~h~gt-~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~ 232 (873)
+.+..+|.+.+-.|.. ..|+|++|+--- -...++.+|.+.+..-+..++.+..+.+...|..|+||+++||++.+.
T Consensus 179 L~Ma~l~q~S~s~~TssaseFL~sltlpg---a~gaQi~Hsqveeqqilaa~n~l~~c~~dG~v~~gpgsvlqhcH~e~p 255 (948)
T KOG4644|consen 179 LNMADLPQDSISGFTSSASEFLESLTLPG---AKGAQIDHSQVEEQQILAADNKLSGCEFDGEVAGGPGSVLQHCHFEEP 255 (948)
T ss_pred cceeecCCCcccccchhHHHHHHhccCCC---CccccccchhhhhheeeecCCceeeeEecccccCCCccccccccccCc
Confidence 9889999888776644 689999988311 122345666666555566788888889999999999999999999999
Q ss_pred eEECCCcEEeCcCCCCCC-CCCccCccceeeCCCeeeeeeeecCcceEEEEEeccCCCCCCCCCCCCcccCcchHHHHHH
Q 002861 233 IQIGSLSIVVGTNFPEEA-GSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDGTFCGKPWQKVWHD 311 (873)
Q Consensus 233 v~IG~~~iisg~~i~~~~-~~~~~~~~~~~iP~~~~i~~v~l~~~~~~v~~~~G~~D~~k~~~~~~~t~~g~~~~~~l~~ 311 (873)
.+||.+|++.+.+-.... +.. +.-.++.+..++ ..+.+....++++.|.-|.|... ..+++++.+|++||+.
T Consensus 256 iHigaGciv~gLdaAhskalhg-relrdL~Lqghh----t~lh~~Pg~AfTllGrlDSwerq--gag~~lnl~~SeFF~~ 328 (948)
T KOG4644|consen 256 IHIGAGCIVLGLDAAHSKALHG-RELRDLFLQGHH----TLLHEFPGAAFTLLGRLDSWERQ--GAGNVLNLKLSEFFDF 328 (948)
T ss_pred ceeeeeeEEeccchhhhhhhcc-hHHHHHHhccch----hhhccCCchhheeeeccchHhhc--CCCceecccHHHHHHH
Confidence 999999999998865421 111 000246666655 34556667889999999999843 5678999999999999
Q ss_pred hCCCccccccCC-CCCccccccccccccccchhh--HHHHHHHhcCCCCCCCcccccccccccccHHHHhccCChHHHhh
Q 002861 312 LGIQESDLWSST-GSQEKCLWNAKIFPILSYSEM--LTLATWLMGLSDHKTGFLLPLWKNSRRVSLEELHRSIDFSEMCT 388 (873)
Q Consensus 312 ~gi~~~dlw~~~-~~~~~~Lw~A~LFPv~~~~~~--l~~~~wm~~~~~~~~~~~~~~w~~~~r~S~~e~~~~~d~~~~~~ 388 (873)
+|.+..|+|++. -+.+.|+-.||||||.+...+ ..+.+||++ .-....+.++.|+.++|+|++++..+.|-.+-++
T Consensus 329 ~g~rawdlwdpeT~paE~c~~~akLfpviH~~re~gpQDll~~ld-h~edg~ea~ka~ras~~i~~eQlk~cld~aa~la 407 (948)
T KOG4644|consen 329 FGARAWDLWDPETCPAEECFIKAKLFPVIHEKREEGPQDLLNALD-HIEDGFEAFKARRASLDIIEEQLKKCLDHAANLA 407 (948)
T ss_pred hhhhhhcccCcccCchHHHhhhhhcccccChhhhcCHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999887 356679999999999999766 458999975 2233467899999999999999999988555444
Q ss_pred hcch---------------hhhhhh-HHHHHHHHhhhhhhhhhHHHHHHHhccCccchh-----hhHHHhhhcc----cc
Q 002861 389 GSSN---------------HQADLA-AGIAKACINYGMLGRNLSQLCEEILQKELSGVD-----ICKDILDLCP----RL 443 (873)
Q Consensus 389 ~~~~---------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----~~ 443 (873)
|+.. .|.+|. -++..+....+.-+-....+++...+..||.+. .+++.|+|++ ++
T Consensus 408 q~~DiFf~ealhka~h~leaRqdLSi~~LI~aa~ke~cpg~L~a~lDQiaagagdP~laaqaiac~ad~Lgc~adGkGGL 487 (948)
T KOG4644|consen 408 QLLDIFFGEALHKADHELEARQDLSICNLIDAASKEACPGILKALLDQIAAGAGDPELAAQAIACAADALGCAADGKGGL 487 (948)
T ss_pred HHHHHHHHhhhccchhHHHHHhhcchhhhhhHhhhhcCchHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhhhhcCCCcc
Confidence 4431 344555 444677777777777777777777778888654 3788899884 45
Q ss_pred cCCCCCCcchhhhHHHHHHHHHhcCchhh---HhHHHHHH-HHHhHHHHHH-HHhhccccccccccccccc-cccccCCC
Q 002861 444 QDQNSKILPKSRAYQAQVDLLRACKEETT---ASELEHKV-WAAVADETAS-AIKYGFREYLLEPLSRGSS-AYQNKNDD 517 (873)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~e~~~-~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~-~~~~~~~~ 517 (873)
|.+++.+..|.|.|.+ | ++||... +...|+.+ |.+.|..|++ |+|||++.|++++..+++. .|+ +.
T Consensus 488 RnGPAaNPe~~kpfs~----l-ecgdlaa~~eala~E~dKnWlS~Pa~liRAARH~Ega~Qi~IRea~~~a~hf~---S~ 559 (948)
T KOG4644|consen 488 RNGPAANPEFEKPFSL----L-ECGDLAADFEALADEIDKNWLSEPAHLIRAARHLEGAAQICIREATDEACHFR---SL 559 (948)
T ss_pred cCCCCCCchhcCchhh----h-cccchhhhHHHHHHHHHhhhhcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHh---Hh
Confidence 6677777789999888 6 6887554 66667665 9999999966 5579999999999999876 455 44
Q ss_pred CCCCCCCCCC-eEEEEeceEEEeecccccCCCcccCCC-CeEEEeeeecccccceeEEEEEecCCc----EEEEeC-CCC
Q 002861 518 GFVDHPFQPR-TVKVELPVRIDFAGGWSDTPPWSLERA-GCVLNVAISLESSLPIGTIIETTKMSG----VLISDD-AGN 590 (873)
Q Consensus 518 ~~~~~~~~~~-~v~v~aP~Rv~L~G~~tD~~~~~~~~g-G~Vl~~AI~l~~~~pi~~~v~~~~~~~----i~i~~~-~~~ 590 (873)
...++|-.+. ||++.||+||||+|||+|+||++++.+ |.|+++||.++++.||++.+++.+++. |.+.-| ...
T Consensus 560 e~~elPg~g~s~Viae~PaRiDF~GGW~DTPPiafel~n~AVlglAiklDGk~PIga~a~kI~ePelwlai~~rQDel~V 639 (948)
T KOG4644|consen 560 EIGELPGAGPSTVIAEAPARIDFFGGWLDTPPIAFELDNAAVLGLAIKLDGKNPIGAFAEKIDEPELWLAIEIRQDELFV 639 (948)
T ss_pred hhccCCCCCCceEEEecceeeeecccccCCCCeeEeccccceeeeEEEecCCCccchhhhcCCCchheeeeeeeccceEE
Confidence 5566776555 999999999999999999999999976 899999999999999999999987763 333222 111
Q ss_pred cee---eecCCCCCCCCCCCChhHHHHHHHHHhhhhhh--------cc--ccccCEEEEEeeccCCCCCCChHHHHHHHH
Q 002861 591 QLH---IEDLTPIATPFDHNDPFRLVKSALLVTGVIHE--------KL--IESMGLQIRTWANVPRGSGLGTSSILAAAV 657 (873)
Q Consensus 591 ~~~---~~~l~~l~~p~~~~~~~~~~kaal~~~~~~~~--------~~--~~~~G~~i~i~s~IP~GsGLGSSSAlavA~ 657 (873)
.++ ..|+.++.+|+. +..+.++++.+.++++- .+ ....||+|+.+|++|.|||||+||+++..+
T Consensus 640 ~I~crclaDlrD~cqpHa---~gal~~aafiCA~IVhl~sel~i~d~~~k~f~~GfeihT~SdLPHGSGLGTSSIlA~Ta 716 (948)
T KOG4644|consen 640 HIKCRCLADLRDLCQPHA---KGALEAAAFICACIVHLGSELNILDIFEKLFCCGFEIHTSSDLPHGSGLGTSSILACTA 716 (948)
T ss_pred EEEeehhhhhHHhhccCC---CchhhhhhhhheeeeeccchhhHHHHHHHHhcCceEeeccccCCCCCCcchHHHHHHHH
Confidence 111 235666776654 45577888777665431 11 234799999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHH----HHHHHHHHcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcE
Q 002861 658 VKALLQITDGDQSNENVAR----LVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQR 733 (873)
Q Consensus 658 l~Al~~~~g~~ls~~eL~~----la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~ 733 (873)
++|+....|.....+.|.+ .+.++||+++|+||||||.++++.|++..+++...+..+.++++.+|+++.++++.+
T Consensus 717 LaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK~gr~rael~~~ie~eeiTipe~f~ekL~dh 796 (948)
T KOG4644|consen 717 LAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIKKGRCRAELNHGIEHEEITIPEEFREKLEDH 796 (948)
T ss_pred HHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhhhccchhhccCCceeeeecCCHHHHHHHhhc
Confidence 9999999998777666544 455699999999999999999999999988777767778899999999999999999
Q ss_pred EEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHH
Q 002861 734 LLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVD 813 (873)
Q Consensus 734 lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~ 813 (873)
+++||||+||.+++++++|.+.|+.+-+..++..+.+.+.++++.+.+++|.++.+|+++..+|++++-|.++|.++.+.
T Consensus 797 LLLVYTGKTRLAkNLLQdViRn~far~~a~~Q~ah~l~~~tdecAegf~kGsl~LlgecL~~YweqKk~MapgCEPl~Vr 876 (948)
T KOG4644|consen 797 LLLVYTGKTRLAKNLLQDVIRNFFARCKATKQKAHKLAEATDECAEGFEKGSLELLGECLEHYWEQKKFMAPGCEPLNVR 876 (948)
T ss_pred EEEEEeCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccCCCCCCCcHH
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCce--EEecCCCccceeEEEeCCcchHHHHHHHHHhcCCC-ceEEEEEeeccC
Q 002861 814 RLFAFADPYCCG--YKLVGAGGGGFALLLAKDAESATELRRMLEKDSNF-NSEVYNWNIYLE 872 (873)
Q Consensus 814 ~l~~~a~~ga~G--~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~~~~-~v~v~~~~i~~~ 872 (873)
+|++.+.....| ....|||||||+|.+.+++.+.+.+...|.++.+| .-.++-..|+.+
T Consensus 877 ~lldmLaph~hgesgw~AGAGGGGFiYLl~kEpqqkeaiEa~Lak~eg~gN~s~Hlieid~e 938 (948)
T KOG4644|consen 877 ELLDMLAPHKHGESGWAAGAGGGGFIYLLIKEPQQKEAIEAFLAKNEGFGNMSCHLIEIDLE 938 (948)
T ss_pred HHHHHhccccccccchhccCCCCcEEEEEecCCCCHHHHHHhhccCCCcCceeEEEEEecCC
Confidence 999999864444 34899999999999999999999999999988776 445666666544
No 3
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=100.00 E-value=7.7e-66 Score=582.03 Aligned_cols=336 Identities=36% Similarity=0.506 Sum_probs=294.5
Q ss_pred CCCC-eeeccCCCcCcCCCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCc
Q 002861 1 MTGD-VLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGR 79 (873)
Q Consensus 1 ~~gD-~i~~~d~~~~~~~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~ 79 (873)
+||| ++.+++...+.++++|++|+|||+++++|++||||++|++++.+++++.+.|++||||||+++|++++|+.++++
T Consensus 59 ~s~D~vl~~~~~~~~~~~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~~~av~~~~~ 138 (414)
T PF07959_consen 59 CSGDMVLSVPDDPLIDWDEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRASGAVLPDGN 138 (414)
T ss_pred EecccccccCccccCCCCCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHhCCcccCCCc
Confidence 4899 999999999999999999999999999999999999999987766666666799999999999999999999999
Q ss_pred cceeeceeeecchHHHHHHhhhcCC-----chhhhhhhccccchhhhHHHHhhccc-ccccccccCC-C-c---------
Q 002861 80 ALLDTGIIAVRGKAWEELVMLSCSC-----PPMVSELLKSGKEMSLYEDLVAAWVP-AKHDWLMLRP-L-G--------- 142 (873)
Q Consensus 80 ~l~~~Gi~~f~~~~~~~ll~~~~~~-----~d~g~d~~~~~~~~~~y~df~~~~~~-~~~~Y~~~~p-v-g--------- 142 (873)
+++|+|+|+|++++++.|+++|.++ .+++. +.+.++++|+|+||++||++ ++.+|.++.+ + +
T Consensus 139 ~~ldsG~~~~s~~~~e~L~~~~~~~~~~~~~y~~~-~g~~~~ei~lY~Dfl~aLg~~~t~e~~~~~~~~~~~~~~l~~aR 217 (414)
T PF07959_consen 139 VLLDSGIVFFSSKAVESLLYLHVSPPLDLCTYYGL-SGALPCEIDLYGDFLQALGPDATEEYPENTSNVLKEESELREAR 217 (414)
T ss_pred ccccccceeccHHHHHHHHHhccCchHhhhhhhhh-cCCccceehHHHHHHHHhcCCccccCccccCCCcchhHHHHHHH
Confidence 9999999999999999999999643 44555 67779999999999999997 4555554422 2 2
Q ss_pred hhHHhhhhcCcceEEEecCceeEEecCcHHHHhhhccCCccc-cccceeeecCCCcccccccceeEEeeeecCCceeCCC
Q 002861 143 KELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGL-VGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGED 221 (873)
Q Consensus 143 d~~~~~l~~~~i~~~~~p~a~F~h~gt~~e~l~~l~~~~~~l-~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~ 221 (873)
.++|..|+..|+..+++|+|+|||+||++|||+|++.+ +.+ ..+.+..+++...++.+..+++|+||+|+++|+|+++
T Consensus 218 ~~l~~~Lr~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~-~~l~~~~~~~~~~~~~~~~~~~~~~~VinSil~~~~~vg~~ 296 (414)
T PF07959_consen 218 QKLWKLLRGTPLNVVPLPNGKFYHFGTSREYLEHLTSD-SELGIMRRKFSHSPATTPSDSEASSCVINSILEGGVSVGPG 296 (414)
T ss_pred HHHHHHhhhccccccccCCceEEEecCCHHHHHhhccC-cccccceeeeeccccccccccCCCeeEEEeEecCCceECCC
Confidence 46888899999999999999999999999999999998 443 2244456666655577888999999999999999999
Q ss_pred cEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeeeeeecCcceEEEEEeccCCCCCCCCCCC-Ccc
Q 002861 222 SLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKD-GTF 300 (873)
Q Consensus 222 s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~v~l~~~~~~v~~~~G~~D~~k~~~~~~-~t~ 300 (873)
|+||||+|+++|+||+||||+||++.... .+ ....||+++|++.|++.|+..||+++||++||||++++.+ +||
T Consensus 297 svIe~s~l~~~~~IG~~cIisGv~~~~~~--~~---~~~~lpd~~~~~~v~l~g~~~~v~~~~Gv~D~~K~~~~~~~~tf 371 (414)
T PF07959_consen 297 SVIEHSHLGGPWSIGSNCIISGVDINSWS--IL---PGLTLPDGVCLHSVRLGGSKRYVTRVFGVDDNLKGSVKDDSLTF 371 (414)
T ss_pred CEEEeeecCCCCEECCCCEEECCcccccc--cc---cCcccCCceEEEEEEeCCCceEEEEEeccCcchhhccccccceE
Confidence 99999999999999999999999986531 11 1239999999999999999999999999999999998765 489
Q ss_pred cCcchHHHHHHhCCCccccccCCCCCccccccccccccccchh
Q 002861 301 CGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSE 343 (873)
Q Consensus 301 ~g~~~~~~l~~~gi~~~dlw~~~~~~~~~Lw~A~LFPv~~~~~ 343 (873)
||+||.+||++|||+.+|+|++++.+++|||||||||||++.|
T Consensus 372 ~g~~~~~~l~~~gl~~~dlw~~~~~~~~~Lw~ArLFPV~~~~e 414 (414)
T PF07959_consen 372 LGRPWSEFLERTGLRPSDLWDSGDPSERSLWNARLFPVCSSSE 414 (414)
T ss_pred CCCcHHHHHhHhCCCHHHccCCCCcchhhhhcCccccccCCCC
Confidence 9999999999999999999999777789999999999999865
No 4
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=100.00 E-value=1.7e-48 Score=399.15 Aligned_cols=314 Identities=28% Similarity=0.431 Sum_probs=273.2
Q ss_pred EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND 608 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~ 608 (873)
++.++|.||.|.||+||++|||..|||.|||+|||+|.+ +++.+..+..|++..+... .+.++.... ++
T Consensus 2 ii~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y----~~i~~~~d~~I~~~~~~~~--~v~~~~~~~-----h~ 70 (333)
T COG2605 2 IISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIY----VTIEKGFDDEIRVRYDRTE--FVKSYLENE-----HK 70 (333)
T ss_pred cccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEE----EEEccCCCceEEEecchHH--hhhhhHhhc-----Cc
Confidence 345799999999999999999999999999999999987 7888877777777633221 122222221 12
Q ss_pred hhHHHHHHHHH--hhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-Hc
Q 002861 609 PFRLVKSALLV--TGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LM 685 (873)
Q Consensus 609 ~~~~~kaal~~--~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~~ 685 (873)
.++++++.. +++ -..+.++|...+++|+|+||||||+++||++.|+..+-|..+++++|++.|..+|+ .+
T Consensus 71 --~~~~~~l~r~~l~~-----~g~~~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l 143 (333)
T COG2605 71 --PLVVESLKRDFLEF-----NGGTPIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDL 143 (333)
T ss_pred --hHHHHHHHHHHHhh-----cCCCceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Confidence 267777763 322 11223999999999999999999999999999999999999999999999999998 68
Q ss_pred CCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHH
Q 002861 686 GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLIS 765 (873)
Q Consensus 686 g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~ 765 (873)
+..+|+|||++++|||++++.+.+.. ++.+.||++..++..+++.+++|+|||++|.+.+++.++++.....+++..+
T Consensus 144 ~~~gG~QDqYaaA~GGFnfMEf~~~~--~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss~V~~dQ~~~~~~~~~~~~e 221 (333)
T COG2605 144 KIVGGKQDQYAAAFGGFNFMEFRGNG--EVVVNPLRINRERTAELEARLLLYYTGITRQSSEVIEDQVRNVVDGDEETLE 221 (333)
T ss_pred ccccccccHHHHHhCCceEEEEcCCC--cEEEeecccchhHHHHHHhceEEEEeccccchhHHHHHHHHHhhcccHHHHH
Confidence 99999999999999999999987653 4678999999999999999999999999999999999998888888888889
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCc
Q 002861 766 SIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDA 844 (873)
Q Consensus 766 ~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~ 844 (873)
.+++|++.+.++.++|-.+|+.+||++|+..|+.+|.+...++++.+|+|++.|.+ |++|+|++|||+|||++.+|+ +
T Consensus 222 ~~~~mk~~A~~~~~al~~nd~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~-p 300 (333)
T COG2605 222 ALHEMKALAYEMKDALVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCD-P 300 (333)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHhcCchhceeeccCCccEEEEEeC-c
Confidence 99999999999999999999999999999999999999999999999999999997 999999999999999999998 5
Q ss_pred chHHHHHHHHHhcCCCceE
Q 002861 845 ESATELRRMLEKDSNFNSE 863 (873)
Q Consensus 845 ~~a~~i~~~L~~~~~~~v~ 863 (873)
....++.+.|++..++.+.
T Consensus 301 ~k~~~l~r~l~~~~~~~~~ 319 (333)
T COG2605 301 SKRNELARALEKEQGFVVD 319 (333)
T ss_pred cchHHHHHHHHHhcCCeEE
Confidence 8899999999987655443
No 5
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-43 Score=378.59 Aligned_cols=318 Identities=20% Similarity=0.223 Sum_probs=247.4
Q ss_pred eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCc-e-eeecCCCCCCCCC
Q 002861 528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ-L-HIEDLTPIATPFD 605 (873)
Q Consensus 528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~-~-~~~~l~~l~~p~~ 605 (873)
...++|||||||+||||||+ ||.|+++||+..++ +.++++++..+++.+.+... . ..+...++. +..
T Consensus 23 ~~~~~aPGRvNLIGEHtDYn------~G~VlP~Ain~~t~----v~v~~r~d~~v~l~s~n~~~~~~~~~~~~d~~-~~~ 91 (390)
T COG0153 23 TVTAFAPGRVNLIGEHTDYN------GGFVLPCAINYGTY----VAVAKRDDGKVRLYSANFGNAGDIFFLLLDIA-KEK 91 (390)
T ss_pred ceEecCCceEEeeccceecc------CceEEEEEeecceE----EEEEEccCceEEEEeCCCccccceeecchhhc-ccc
Confidence 47889999999999999998 99999999999987 78889988888888755442 1 233333443 233
Q ss_pred CCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-H
Q 002861 606 HNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-L 684 (873)
Q Consensus 606 ~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~ 684 (873)
.++|.+|+|+++..+.. ....-.|+++.+.++||.|+|||||||+.+|++.++.++++.++++.+|+++++++|+ +
T Consensus 92 ~~~W~nYvkgvi~~l~~---~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~f 168 (390)
T COG0153 92 IDDWANYVKGVIKALQK---RGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQF 168 (390)
T ss_pred cchhhhhHHHHHHHHHh---cCCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc
Confidence 46899999998877642 2344569999999999999999999999999999999999999999999999999996 7
Q ss_pred cCCCChhhhhHhhcccCe---eEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHH---------------
Q 002861 685 MGTGGGWQDQIGGLYPGI---KFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH--------------- 746 (873)
Q Consensus 685 ~g~~~G~~Dq~~~~~GG~---~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~--------------- 746 (873)
+|++||+|||+++++|.- .++++. + ++++++++|.. +..+++++|+++|.+.
T Consensus 169 vGvn~G~mDQ~~s~~G~~~~al~ld~~---~--l~~~~~~~p~~-----~~~ivI~ns~vkr~la~seYn~Rr~ece~A~ 238 (390)
T COG0153 169 VGVNCGIMDQLASAFGKKDHALLLDCR---T--LEYEPVPFPVG-----GVSIVIVNSNVKRELADSEYNERRAECEEAA 238 (390)
T ss_pred cCCcCchHHHHHHHhCCCCcEEEEEcc---c--CceEEeccCcc-----ceEEEEecCCCccccchhHHHHHHHHHHHHH
Confidence 899999999999999954 455543 2 35677777652 4799999999977432
Q ss_pred HHHHHHHHHHhh--------c------CH-HHHHHHHHHH--HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCCh
Q 002861 747 QVLQKVVTRYLQ--------R------DN-LLISSIKRLT--ELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSN 809 (873)
Q Consensus 747 ~~l~~v~~~~~~--------~------~~-~~~~~~~~i~--~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~ 809 (873)
+.++...+.+.. . ++ ...+..+-+. +.+.+..+||+++|+.+||++|+++|+++++.++ +++
T Consensus 239 ~~l~~~~~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~~SH~slrddye-vt~ 317 (390)
T COG0153 239 EFLGVSIKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDYE-VTC 317 (390)
T ss_pred HHHHHhhhhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccc
Confidence 222220000000 0 01 1112222222 2367888999999999999999999999999995 999
Q ss_pred HHHHHHHHHHcc--CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhc----CCCceEEEEEeecc
Q 002861 810 EFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD----SNFNSEVYNWNIYL 871 (873)
Q Consensus 810 p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~----~~~~v~v~~~~i~~ 871 (873)
|++|.|++++.. |++|+||||||||||+++|+++ +.++.+++.+.+. .++...+|.+.+..
T Consensus 318 pElD~lve~a~~~~G~~GaRmTGaGfGGc~IaLv~~-~~v~~~~e~v~~~y~~~~g~k~~~yv~~~~~ 384 (390)
T COG0153 318 PELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPN-DDVEAVAEAVAEEYEKVTGLKAAFYVVEASQ 384 (390)
T ss_pred hhHHHHHHHHHHcCCcccceecCCCCCceEEEEech-hhHHHHHHHHHHhHHhhcCccccEEEEeccC
Confidence 999999999974 7799999999999999999986 6777777777643 45677888887654
No 6
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=1.5e-39 Score=366.42 Aligned_cols=315 Identities=17% Similarity=0.178 Sum_probs=239.9
Q ss_pred EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCc-eeeecCCCCCCCCCCC
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ-LHIEDLTPIATPFDHN 607 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~-~~~~~l~~l~~p~~~~ 607 (873)
+.++|||||+|+|||+||. ||.||++||+++++ +.++++++..+++.+..... ....+++....+....
T Consensus 21 ~~~~APgRvnL~GeH~Dy~------gg~vL~~AId~~~~----v~i~~~~~~~i~v~s~~~~~~~~~~~~~~~~~~~~~~ 90 (382)
T PRK05101 21 HTIQAPGRVNLIGEHTDYN------DGFVLPCAIDYQTV----ISCAKRDDRIVRVIAADYDNQQDEFSLDAPIVPHPEQ 90 (382)
T ss_pred eEEECCceEEEeccceeec------CCEEEEEEecccEE----EEEEECCCCEEEEEECCCCCCceEEecCcccccCCCC
Confidence 7899999999999999984 99999999999987 77888888888887654321 1223333211122335
Q ss_pred ChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HcC
Q 002861 608 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LMG 686 (873)
Q Consensus 608 ~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~~g 686 (873)
.|.+|+++++..+.. ......|+++++.++||.|+|||||||+++|++.|++++++.++++++|++++..+|+ +.|
T Consensus 91 ~w~~yv~~~~~~l~~---~~~~~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G 167 (382)
T PRK05101 91 QWANYVRGVVKHLQE---RNPDFGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVG 167 (382)
T ss_pred chHHHHHHHHHHHHH---hCCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcC
Confidence 699999999987642 2233469999999999999999999999999999999999999999999999999998 579
Q ss_pred CCChhhhhHhhcccCe---eEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcc-------hHHHH-----HH-
Q 002861 687 TGGGWQDQIGGLYPGI---KFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVR-------LAHQV-----LQ- 750 (873)
Q Consensus 687 ~~~G~~Dq~~~~~GG~---~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr-------~t~~~-----l~- 750 (873)
++||.|||+++++||. .++++.+ . .+.++++++ +..++|++||.++ .|+.. ..
T Consensus 168 ~~~G~~Dq~~s~~G~~~~~~~~d~~~---~--~~~~~~~~~------~~~~vv~~sg~~~~l~~~~y~~r~~e~~~A~~~ 236 (382)
T PRK05101 168 CNCGIMDQLISALGKKDHALLIDCRS---L--ETKAVPMPE------GVAVVIINSNVKRGLVDSEYNTRRQQCETAARF 236 (382)
T ss_pred CCCccHHHHHHHcCCCCeEEEEEcCC---C--ceEEeeCCC------CcEEEEEeCCCCccccccchhHHHHHHHHHHHH
Confidence 9999999999999984 3443322 2 345565553 4689999999888 45531 00
Q ss_pred -HHHHHHhh-------------cCHHHHHHHHHHH--HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHH
Q 002861 751 -KVVTRYLQ-------------RDNLLISSIKRLT--ELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDR 814 (873)
Q Consensus 751 -~v~~~~~~-------------~~~~~~~~~~~i~--~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~ 814 (873)
.+ +.... .+....+..+.+. +.+.++++||+++|++.||++|+++|.++++.+ ++++|++|.
T Consensus 237 l~~-~~l~~~~~~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~lr~~~-~vS~~eld~ 314 (382)
T PRK05101 237 FGV-KALRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDF-EITVPQIDT 314 (382)
T ss_pred hCh-HhhhcCCHHHHHHHHhhCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHHhhc-CCCCHhHHH
Confidence 00 01110 0111223444454 367889999999999999999999999998655 499999999
Q ss_pred HHHHHcc--CC-ceEEecCCCccceeEEEeCCcchHHHHHHHHHh----cCCCceEEEEEeec
Q 002861 815 LFAFADP--YC-CGYKLVGAGGGGFALLLAKDAESATELRRMLEK----DSNFNSEVYNWNIY 870 (873)
Q Consensus 815 l~~~a~~--ga-~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~----~~~~~v~v~~~~i~ 870 (873)
|++.+++ |+ +|+||||||+|||+++|++. +.++++.+.+++ ..+....+|.+++.
T Consensus 315 lv~~a~~~~Ga~gGakltGaG~GG~~ial~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 376 (382)
T PRK05101 315 LVEIVKAVIGDQGGVRMTGGGFGGCIVALVPE-ELVEAVRQAVAEQYEAKTGLKETFYVCKAS 376 (382)
T ss_pred HHHHHHhccCCcceEEeccCCCccEEEEEEcH-HHHHHHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 9999986 76 58899999999999999996 667777777643 34456778887764
No 7
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=3.2e-39 Score=361.21 Aligned_cols=317 Identities=18% Similarity=0.157 Sum_probs=238.7
Q ss_pred EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND 608 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~ 608 (873)
++++|||||+|+|||+||+ ||.|+++||+++++ +.++++++..+++.+.........+++. .+.....
T Consensus 3 ~~~~APGRv~LiGEH~dy~------~g~vl~~Ai~~~~~----v~~~~~~~~~i~i~s~~~~~~~~~~~~~--~~~~~~~ 70 (363)
T PRK00555 3 VRYAAPGRINLIGEHTDYN------LGFALPIALPQRTV----VTFTPEHTDAITASSDRADGSARIPLDT--TPGQVTG 70 (363)
T ss_pred EEEEcCceEEeecccccCC------CCeEEeEEeeccEE----EEEEECCCCEEEEEECCCCCceEEecCC--CCCCCcc
Confidence 6789999999999999996 99999999999987 7888988888888765543222222222 1223356
Q ss_pred hhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HcCC
Q 002861 609 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LMGT 687 (873)
Q Consensus 609 ~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~~g~ 687 (873)
|.+|+++++..+.. ......|+++.|.|+||.|+|||||||+++|++.|++++++.++++++++++|+.+|+ +.|+
T Consensus 71 w~~y~~gv~~~l~~---~g~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G~ 147 (363)
T PRK00555 71 WAAYAAGVIWALRG---AGHPVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGA 147 (363)
T ss_pred hHHHHHHHHHHHHH---cCCCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCC
Confidence 99999998776532 2233469999999999999999999999999999999999999999999999999998 6799
Q ss_pred CChhhhhHhhcccCe---eEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHH--------HHHHHHHHHH
Q 002861 688 GGGWQDQIGGLYPGI---KFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH--------QVLQKVVTRY 756 (873)
Q Consensus 688 ~~G~~Dq~~~~~GG~---~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~--------~~l~~v~~~~ 756 (873)
+||.|||+++++||. .++++.+ . .+.+++++++. ....|++++|+.++.+. .....+.+.+
T Consensus 148 ~~G~~Dq~as~~G~~~~~~~~d~~~---~--~~~~v~~~~~~---~~~~lvv~~s~~~~~~~~~~y~~rr~~~~~~~~~~ 219 (363)
T PRK00555 148 PTGLLDQLAALFGAPKTALLIDFRD---L--TVRPVAFDPDA---AGVVLLLMDSRARHRHAGGEYAARRASCERAAADL 219 (363)
T ss_pred CCChhHHHHHHhCCCCeEEEEEcCC---C--cEEEeccCCCc---CceEEEEEcCCCcccccchhhHHHHHHHHHHHHHh
Confidence 999999999999986 5555533 2 34566654321 23579999999887632 2222221111
Q ss_pred h-----hcC-------------HHHHHHHHHH--HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHH
Q 002861 757 L-----QRD-------------NLLISSIKRL--TELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLF 816 (873)
Q Consensus 757 ~-----~~~-------------~~~~~~~~~i--~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~ 816 (873)
. ... ....+..+.+ ...+.++..+|.++|++.||++|+++|+.++..+ ++++|+++.|+
T Consensus 220 ~~~~lr~~~~~~~~~~~~~~~~~~~~r~~h~~~e~~~v~~~~~al~~gd~~~lg~lm~~~h~~lr~~~-~vS~~~ld~l~ 298 (363)
T PRK00555 220 GVSSLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDF-EITTERIDLIA 298 (363)
T ss_pred CccchhcCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHHHhhc-CCCChhHHHHH
Confidence 0 000 1111222222 2357788999999999999999999999988444 49999999999
Q ss_pred HHHcc-CCceEEecCCCccceeEEEeCCcchHHHHHHHHHh----cCCCceEEEEEeec
Q 002861 817 AFADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEK----DSNFNSEVYNWNIY 870 (873)
Q Consensus 817 ~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~----~~~~~v~v~~~~i~ 870 (873)
+.+++ |++|+|+||||+|||++++++. +.++++.+.+++ .++..+.+|.+++.
T Consensus 299 ~~a~~~Ga~GaklsGaG~Gg~vial~~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 356 (363)
T PRK00555 299 DSAVRAGALGARMTGGGFGGCVIALVPA-DRAEDVADTVRRAAVTAGYPEPAVSRTYAA 356 (363)
T ss_pred HHHHhcCCeEEEECCCCccCeEEEEEch-hHHHHHHHHHHHHHHHccCCCCcEEEEecC
Confidence 99887 9999999999999999999986 456666655544 44567888888764
No 8
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=6e-39 Score=361.95 Aligned_cols=320 Identities=18% Similarity=0.187 Sum_probs=237.6
Q ss_pred EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCc--eeeecCCCCCCCCCC
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ--LHIEDLTPIATPFDH 606 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~--~~~~~l~~l~~p~~~ 606 (873)
..++|||||+|+|||+||. ||.||++||+++++ +.++++++..+++.+..... ....+++++.. ...
T Consensus 20 ~~~~APgRv~L~GEH~d~~------g~~vl~~AI~~~~~----v~~~~~~~~~i~i~s~~~~~~~~~~~~~~~~~~-~~~ 88 (387)
T PRK05322 20 DVFFSPGRINLIGEHTDYN------GGHVFPAAITLGTY----GAARKRDDKKVRLYSANFEDLGIIEFDLDDLSF-DKE 88 (387)
T ss_pred eEEEcCceeEecccceeec------CceeeeeeccceEE----EEEEECCCCEEEEEECCCCCCceEEEeccccCC-CCc
Confidence 6779999999999999995 99999999999987 77888888888887654431 12223333322 233
Q ss_pred CChhHHHHHHHHHhhhhhhccc-cccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-H
Q 002861 607 NDPFRLVKSALLVTGVIHEKLI-ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-L 684 (873)
Q Consensus 607 ~~~~~~~kaal~~~~~~~~~~~-~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~ 684 (873)
.+|.+|+++++..+.. ... ...||+++|.|+||.|+|||||||+++|++.|++++++.++++++|+++|+.+|+ +
T Consensus 89 ~~w~~y~~gvi~~l~~---~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~ 165 (387)
T PRK05322 89 DDWANYPKGVLKFLQE---AGYKIDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEF 165 (387)
T ss_pred cchHHHHHHHHHHHHH---cCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcc
Confidence 5699999998887642 122 2369999999999999999999999999999999999999999999999999998 5
Q ss_pred cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHH------------HHHHHH
Q 002861 685 MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH------------QVLQKV 752 (873)
Q Consensus 685 ~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~------------~~l~~v 752 (873)
.|++||+|||+++++||.......+..+++....|+++. +..|+|++||.++.+. +++..+
T Consensus 166 ~G~~sG~mDq~as~~G~~~~~~~~d~~~~~~~~~~~~~~-------~~~lvv~dsg~~~~~~~~~yn~r~~e~~~a~~~l 238 (387)
T PRK05322 166 IGVNSGIMDQFAIGMGKKDHAILLDCNTLEYEYVPLDLG-------DYVIVIMNTNKRRELADSKYNERRAECEKALEEL 238 (387)
T ss_pred CCCCcchHHHHHHHhccCCeEEEEecCCCceEEeccCCC-------CeEEEEEECCCccccCcchhhHHHHHHHHHHHHH
Confidence 799999999999999984422222222233333344321 3579999999988643 333333
Q ss_pred HHHH-----hhcCHHH-HH---------HHHHH------HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHH
Q 002861 753 VTRY-----LQRDNLL-IS---------SIKRL------TELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEF 811 (873)
Q Consensus 753 ~~~~-----~~~~~~~-~~---------~~~~i------~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~ 811 (873)
.+.+ ...+++. .. ..+++ ...+..+..||+++|++.||++|+++|..+++.+ ++++|+
T Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y-~~s~~e 317 (387)
T PRK05322 239 QKKLDIKSLGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDY-EVTGLE 317 (387)
T ss_pred hhhcCccchhcCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhh-cCCCHh
Confidence 2111 0001111 00 01121 1346788999999999999999999999887655 388899
Q ss_pred HHHHHHHHc-c-CCceEEecCCCccceeEEEeCCcchHHHHHHHH----HhcCCCceEEEEEeecc
Q 002861 812 VDRLFAFAD-P-YCCGYKLVGAGGGGFALLLAKDAESATELRRML----EKDSNFNSEVYNWNIYL 871 (873)
Q Consensus 812 l~~l~~~a~-~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L----~~~~~~~v~v~~~~i~~ 871 (873)
++.|++.++ . |++|+|+||||+|||+++|++. +..+++.+.+ .+.++..+.+|.+++..
T Consensus 318 ld~lv~~a~~~~Ga~garlsGaG~GG~vial~~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~ 382 (387)
T PRK05322 318 LDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKK-DKVEAFKENVGKAYEEKIGYAASFYVAEIGD 382 (387)
T ss_pred HHHHHHHHHhcCCccEEEEecCCCceEEEEEEcH-HHHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 999999995 4 9999999999999999999986 4566555554 44456778888887653
No 9
>PLN02865 galactokinase
Probab=100.00 E-value=1.5e-38 Score=357.77 Aligned_cols=323 Identities=19% Similarity=0.133 Sum_probs=240.1
Q ss_pred EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCC------
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIAT------ 602 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~------ 602 (873)
+.++|||||||+|||+||+ ||.|+++||+++++ +.++++++..+++.+........+++++...
T Consensus 31 ~~~~APGRVnlIGEHtDYn------gG~VLp~AI~~~~~----va~~~~~~~~i~v~s~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
T PLN02865 31 RVVVSPYRICPLGAHIDHQ------GGTVSAMTINKGIL----LGFVPSGDPEVLLRSAQFEGEVRFRVDEIQHPIANVS 100 (423)
T ss_pred eEEEcCcceecccccccCC------CCeEEeEEeeccEE----EEEEECCCCEEEEEECCCCCceEEecccccccccccc
Confidence 6789999999999999997 99999999999987 7788888888888775543222233332211
Q ss_pred --CCCCCChhHHHHHHHHHhhhhhhccc-cccCEEEEEeecc-CCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 002861 603 --PFDHNDPFRLVKSALLVTGVIHEKLI-ESMGLQIRTWANV-PRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLV 678 (873)
Q Consensus 603 --p~~~~~~~~~~kaal~~~~~~~~~~~-~~~G~~i~i~s~I-P~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la 678 (873)
+.....|.+|+++++..+.. ... ...||++.|.+++ |.|+|||||||+.+|++.|++.+++..++++++++++
T Consensus 101 ~~~~~~~~W~~Yv~gv~~~l~~---~g~~~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a 177 (423)
T PLN02865 101 SDSKEESNWGDYARGAVYALQS---RGHALSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELD 177 (423)
T ss_pred ccCCCCCCHHHHHHHHHHHHHH---cCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 12235699999999887631 223 2369999999999 6899999999999999999999999999999999999
Q ss_pred HHHHH-HcCCCChhhhhHhhccc---CeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHH--------
Q 002861 679 LLLEQ-LMGTGGGWQDQIGGLYP---GIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH-------- 746 (873)
Q Consensus 679 ~~~E~-~~g~~~G~~Dq~~~~~G---G~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~-------- 746 (873)
+.+|+ ++|++||+|||+++++| ++.++++.+. .++..|+++++... ..++.+++++|+.+|...
T Consensus 178 ~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf~~l---~~~~vpl~~~~~~~-~~~~~ivv~~s~~~h~l~~~~~Yn~R 253 (423)
T PLN02865 178 RLIENEYLGLRNGILDQSAILLSRYGCLTFMDCKTL---DHKLVSLQFQQPGG-EKPFKILLAFSGLRHALTNKPGYNLR 253 (423)
T ss_pred HHHHHHhcCCCCccccHHHHHhcccCceEEEEccCC---CcceeecCcccccC-CCCeEEEEEeCCCchhhcccchhhHH
Confidence 99997 68999999999996665 7888887653 33344555332100 025689999999887521
Q ss_pred --------HHHHHH------HHHHhhcC-------------HHHHHHHHHHHH--HHHHHHHHHhccCHHHHHHHHHHHH
Q 002861 747 --------QVLQKV------VTRYLQRD-------------NLLISSIKRLTE--LAKNGRDALMNCDVDELGKIMLEAW 797 (873)
Q Consensus 747 --------~~l~~v------~~~~~~~~-------------~~~~~~~~~i~~--~~~~~~~AL~~gd~~~lg~lm~~~~ 797 (873)
.++.+. ...+..-+ ....+..+.+.+ .+.++.++|+++|++.||++|+++|
T Consensus 254 r~Ec~~aa~~l~~~~~~~~~~~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm~~sh 333 (423)
T PLN02865 254 VSECQEAARFLLEASGNDELEPLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASG 333 (423)
T ss_pred HHHHHHHHHHHHHhcCCccchhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Confidence 112100 00000000 111233333333 3678889999999999999999999
Q ss_pred HHHhhhCCCCChHHHHHHHHHHcc--CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhc-----------CCCceEE
Q 002861 798 RLHQELDPHCSNEFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD-----------SNFNSEV 864 (873)
Q Consensus 798 ~~~~~l~~~vs~p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~-----------~~~~v~v 864 (873)
.++++.++ +++|++|.|++.+++ |++|+||+|+|+|||+++|+++ +.++++.+.+.+. .+....+
T Consensus 334 ~Slrd~ye-vS~~eld~lv~~a~~~~Ga~GaR~tGgGfGGc~vaLv~~-~~~~~~~~~v~~~Y~~~~p~~~~~~~~~~~~ 411 (423)
T PLN02865 334 LSSIENYE-CGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVDA-EMAEEAASFVRDEYEKAQPELASNINGDKPV 411 (423)
T ss_pred hhHHhhcc-CCcHHHHHHHHHHHhcCCCeEEEEeccCCccEEEEEEch-hHHHHHHHHHHHHHHhhccccccccCCCCcE
Confidence 99999985 999999999999875 8999999999999999999996 6677777666542 1245567
Q ss_pred EEEeec
Q 002861 865 YNWNIY 870 (873)
Q Consensus 865 ~~~~i~ 870 (873)
|.+++.
T Consensus 412 ~~~~p~ 417 (423)
T PLN02865 412 LICEAG 417 (423)
T ss_pred EEEecC
Confidence 777654
No 10
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=3.3e-38 Score=358.03 Aligned_cols=320 Identities=13% Similarity=0.116 Sum_probs=223.5
Q ss_pred EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEe---cCCcEEEEeCCCCceeeecCCCCCCCCC
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETT---KMSGVLISDDAGNQLHIEDLTPIATPFD 605 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~---~~~~i~i~~~~~~~~~~~~l~~l~~p~~ 605 (873)
+.++|||||||+||||||+ ||.|+++||+++++ +.+.++ ++..+++.+.... .++++....+..
T Consensus 38 ~~~~APGRVnLIGEHtDYn------gG~VLp~AId~~~~----va~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~ 104 (468)
T PTZ00290 38 LFTFAPGRVNFIGEHVDYM------GGYVCPAAVLEGCH----ILVGRVKHFCDHKLRFATETDE---HFVLDHLGGAKH 104 (468)
T ss_pred EEEeccceeeecccccccC------CCeeeeccccCcEE----EEEeecCCCCCCeEEEEECCCc---eeecCcccccCC
Confidence 8899999999999999996 99999999999987 555544 4566777554321 122222221222
Q ss_pred CCChhHHHHHHHHH-hhhhhhccc-----cccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCC------------
Q 002861 606 HNDPFRLVKSALLV-TGVIHEKLI-----ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDG------------ 667 (873)
Q Consensus 606 ~~~~~~~~kaal~~-~~~~~~~~~-----~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~------------ 667 (873)
..+|.+|+++++.. +. .... ...||++.|.++||.|+|||||||+.+|++.|++.+++.
T Consensus 105 ~~~W~nYv~gv~~~~l~---~~g~~~~~~~~~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~ 181 (468)
T PTZ00290 105 NKAWTTFVRGAATLRLN---RLGVAIDAPSLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRR 181 (468)
T ss_pred cccHHHHHHHHHHHHHH---HhCCCcccCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccc
Confidence 35799999999754 22 1112 236999999999999999999999999999999998732
Q ss_pred --------CCCHHHHHHHHHHHHH-HcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEE
Q 002861 668 --------DQSNENVARLVLLLEQ-LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVF 738 (873)
Q Consensus 668 --------~ls~~eL~~la~~~E~-~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~ 738 (873)
+.+..+|+.+++++|+ ++|++||+|||+++++|+.......+..++ +++++++++- ...+..|+|++
T Consensus 182 ~~~~~~~~~~~~~~lA~~aqraEn~~vGv~cGiMDQ~asa~g~~~~al~iD~~~l--~~~~v~l~~~--~~~~~~~vV~n 257 (468)
T PTZ00290 182 YSILPPMSKEELIELAKQARRIETEFCGVNVGIMDQFISAFAEEDKFMFLDCKSL--TFESHDMTPL--LGDGACFLLID 257 (468)
T ss_pred cccccccCcccHHHHHHHHHHHHHhhcCCCcchhhHHHHHhCCCCcEEEEecCCC--eEEEeccCCC--CCCCcEEEEEe
Confidence 1234789999999998 689999999999999985543333333223 4566655420 00256899999
Q ss_pred eCCcchHH----HHH-------HHHHHHHhh-------------------------------------cCHHHHHHHHHH
Q 002861 739 TGQVRLAH----QVL-------QKVVTRYLQ-------------------------------------RDNLLISSIKRL 770 (873)
Q Consensus 739 tg~tr~t~----~~l-------~~v~~~~~~-------------------------------------~~~~~~~~~~~i 770 (873)
|+.+|+.. ..+ +...+.+.. .+....+..+.+
T Consensus 258 S~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~l~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ra~HVi 337 (468)
T PTZ00290 258 SMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHRYRGKPFTFSDLVRNPKKYTFDGDVVAFMESCKPLMTPGEFERGTYNI 337 (468)
T ss_pred CCCcchhccccchhhHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccccccHHHHHHHhhhcCCHHHHHHHHHHh
Confidence 99988621 011 100010000 001111223333
Q ss_pred HH--HHHHHHHHHh-------ccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHH-cc-CCceEEecCCCccceeEE
Q 002861 771 TE--LAKNGRDALM-------NCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFA-DP-YCCGYKLVGAGGGGFALL 839 (873)
Q Consensus 771 ~~--~~~~~~~AL~-------~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a-~~-ga~G~klsGAGgGG~v~~ 839 (873)
.+ .+.+++.+|+ .+|+..||++|+++|.++++.+ ++++|++|.|++.+ .. |++|+||||||||||+++
T Consensus 338 tEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~-~vS~~elD~lv~~~~~~~G~~GaRlTGaG~GGc~i~ 416 (468)
T PTZ00290 338 MEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLM-KITTPELDFIHELINEEKGVAGGRMMGGGFGGCIIL 416 (468)
T ss_pred hHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHhCCCcEEEEecCCCceEEEE
Confidence 33 2556666664 4569999999999999988877 49999999999975 44 899999999999999999
Q ss_pred EeCCcchHHHHHHHHH----hcCCCceEEEEEeec
Q 002861 840 LAKDAESATELRRMLE----KDSNFNSEVYNWNIY 870 (873)
Q Consensus 840 l~~~~~~a~~i~~~L~----~~~~~~v~v~~~~i~ 870 (873)
|++. +..+++.+.++ +.++....+|.+.+.
T Consensus 417 Lv~~-~~~~~~~~~v~~~y~~~~g~~~~~~~~~~~ 450 (468)
T PTZ00290 417 LLKK-NAVDRVVAHVREKFKARFGVENDVYPVVAG 450 (468)
T ss_pred Eech-hhHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 9986 55555555554 444556788888764
No 11
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=100.00 E-value=6.9e-38 Score=350.10 Aligned_cols=312 Identities=21% Similarity=0.194 Sum_probs=246.1
Q ss_pred EEEeceEEEeecccccCCCcccCCCC-eEEEeeeecccccceeEEEEEecCCcEEEEeCCCCc-eeeecCCC--C-CCCC
Q 002861 530 KVELPVRIDFAGGWSDTPPWSLERAG-CVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ-LHIEDLTP--I-ATPF 604 (873)
Q Consensus 530 ~v~aP~Rv~L~G~~tD~~~~~~~~gG-~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~-~~~~~l~~--l-~~p~ 604 (873)
.++|||||+|+|||+|+. +| .+|.+||+.+.+ ++++++++..+.+.++.... ......+. + ....
T Consensus 2 ~~~APGKl~L~GEhavv~------~G~pAl~~aI~~~~~----v~i~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01220 2 VVHAPGKLFVAGEYAVVE------PGNPAILVAVDRFVT----VTVEDADGAADVIISSDLGPQPVGWRRHDGRLVVRDP 71 (358)
T ss_pred eeecceeEEEeeeEEEec------CCCeEEEEEEcCcEE----EEEEeCCCCceEEEecCCCCCceEEEecCCceeeccc
Confidence 578999999999999993 45 599999999877 78888877767776544321 11111111 1 0111
Q ss_pred CCCChhHHHHHHHHHhhh-hhhccccccCEEEEEeeccCCC----CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 002861 605 DHNDPFRLVKSALLVTGV-IHEKLIESMGLQIRTWANVPRG----SGLGTSSILAAAVVKALLQITDGDQSNENVARLVL 679 (873)
Q Consensus 605 ~~~~~~~~~kaal~~~~~-~~~~~~~~~G~~i~i~s~IP~G----sGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~ 679 (873)
...+|++|+++++..+.. ........+||++.+.|++|.+ +|||||||++||++.|++++++.++++++++++|.
T Consensus 72 ~~~~~~~~v~~~i~~~~~~~~~~~~~~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA~ 151 (358)
T TIGR01220 72 DARSALAYVVSAIETVERYAGERNQKLPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLAM 151 (358)
T ss_pred ccccchHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 234689999998876421 1111223468999999999984 69999999999999999999999999999999999
Q ss_pred HHHHHcCCCChhhhhHhhcccCeeEEecCCCCc------------------ceeEEEeecCChhhhhhcCcEEEEEEeCC
Q 002861 680 LLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIP------------------LRLQVIPLLASPQLILELQQRLLVVFTGQ 741 (873)
Q Consensus 680 ~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~------------------~~~~v~pl~~~~~~~~~~~~~lllv~tg~ 741 (873)
.+|...+.+++.+|+++++|||+.+++.++... ....++++++++ +.+++|+|||.
T Consensus 152 ~~E~~~~g~~sg~D~~a~~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~------~~~l~v~~tg~ 225 (358)
T TIGR01220 152 LATAELQPKGSCGDIAASTYGGWIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAPK------GLTLLIGWTGS 225 (358)
T ss_pred HHHhhhCCCCCcchhhhhhhCCEEEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCCC------CCEEEEEeCCC
Confidence 999866543444699999999998775332110 012356776654 46899999999
Q ss_pred cchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCC----CCChHHHHHHHH
Q 002861 742 VRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDP----HCSNEFVDRLFA 817 (873)
Q Consensus 742 tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~----~vs~p~l~~l~~ 817 (873)
+++|++++++|.+.+...++.+...++++.+++.++.++|+++|++.|+++|+++|..++.+.. ++++|++++|++
T Consensus 226 ~~~T~~~v~~V~~~~~~~~~~~~~~l~~~~~i~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~ 305 (358)
T TIGR01220 226 PASTASLVSDVHRRKWRGSASYQRFLETSTDCVESAITAFETGDITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCD 305 (358)
T ss_pred CcCcHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHH
Confidence 9999999998876655544545567888999999999999999999999999999999999854 689999999999
Q ss_pred HHcc-CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhcC
Q 002861 818 FADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDS 858 (873)
Q Consensus 818 ~a~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~~ 858 (873)
.+++ |+ |+|+||||+|||+++|+++++.++++.++|++++
T Consensus 306 ~a~~~ga-~aKlsGAGgGg~~ial~~~~~~~~~~~~~~~~~G 346 (358)
T TIGR01220 306 AAEAYGG-AAKPSGAGGGDCGIAILDAEADITHVRQRWETAG 346 (358)
T ss_pred HHhhcCc-eecCCCCCCcCEEEEEeCCchhHHHHHHHHHHCC
Confidence 9998 66 9999999999999999998788999999999984
No 12
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=7.6e-38 Score=354.40 Aligned_cols=318 Identities=19% Similarity=0.218 Sum_probs=236.3
Q ss_pred EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCc-eeeecCCCCCCCCCCC
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ-LHIEDLTPIATPFDHN 607 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~-~~~~~l~~l~~p~~~~ 607 (873)
++++|||||+|+|||+||. ||.||++||+++++ +.++++++..+++.+..... ....+++....+....
T Consensus 18 ~~~~APgrv~L~GeH~dy~------g~~vl~~AI~~~~~----v~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 87 (386)
T TIGR00131 18 FTARAPGRVNLIGEHTDYN------DGSVLPCAIDFGTL----CAVAVRDDKNVRIYLANADNKFAERSLDLPLDGSEVS 87 (386)
T ss_pred EEEECCcceEeeccceeeC------CceEEeeEeeccEE----EEEEECCCCeEEEEECCCCCcceEEECCCCCCCCCCC
Confidence 8889999999999999985 99999999999887 77888888888876644321 1112222111122225
Q ss_pred ChhHHHHHHHHHhhhhhhccc-cccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-Hc
Q 002861 608 DPFRLVKSALLVTGVIHEKLI-ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LM 685 (873)
Q Consensus 608 ~~~~~~kaal~~~~~~~~~~~-~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~~ 685 (873)
+|.+|+++++..+.. .+. ...|+++.|.++||.|+|||||||+++|++.|++.+++.+++++++++++..+|+ ..
T Consensus 88 ~w~~y~~~~~~~~~~---~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~ 164 (386)
T TIGR00131 88 DWANYFKGVLHVAQE---RFNSFPLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFV 164 (386)
T ss_pred CcHhHHHHHHHHHHH---hcCCCCCceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCcc
Confidence 688999999876532 222 2459999999999999999999999999999999999999999999999999998 47
Q ss_pred CCCChhhhhHhhcccCe---eEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHH-HH-------HHHH
Q 002861 686 GTGGGWQDQIGGLYPGI---KFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQV-LQ-------KVVT 754 (873)
Q Consensus 686 g~~~G~~Dq~~~~~GG~---~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~-l~-------~v~~ 754 (873)
|+++|.|||+++++||. .++++.+ +.+.++++++ ++..|+|++||.++.|... +. ...+
T Consensus 165 G~~~g~~Dq~~s~~G~~~~~l~~~~~~-----~~~~~~~~~~-----~~~~lvv~~s~~~~~t~~~~y~~r~~e~~~a~~ 234 (386)
T TIGR00131 165 GVNCGIMDQAASVLGKEDHALLVECRS-----LKATPFKFPQ-----LGIAFVIANTNVKRTLAPSNYNTRRQECTTAAN 234 (386)
T ss_pred CCCcchHHHHHHHhccCCcEEEEEcCC-----CceeeecCCC-----CCeEEEEEeCCCccccccchhHHHHHHHHHHHH
Confidence 99999999999999994 3444332 2345666553 2468999999998875421 00 0000
Q ss_pred --------HHhhcCHHH-H---HHHHHHHH--------------HHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCC
Q 002861 755 --------RYLQRDNLL-I---SSIKRLTE--------------LAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCS 808 (873)
Q Consensus 755 --------~~~~~~~~~-~---~~~~~i~~--------------~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs 808 (873)
......+.. . +.+..+.+ .+.++.++|.++|++.||++|+++|.++++++ +++
T Consensus 235 ~l~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~rv~~~~~al~~~d~~~lG~lm~~sh~~l~~~~-~vs 313 (386)
T TIGR00131 235 FLAATDKGALRDFMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDDDY-ECT 313 (386)
T ss_pred HhccccccchhhCCHHHHhhhHhhHhhcCHHHHhhHheeehHHHHHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhc-CCC
Confidence 001111111 1 11111111 24578999999999999999999999999876 699
Q ss_pred hHHHHHHHHHH-cc-CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhc----CCCceEEEEEeecc
Q 002861 809 NEFVDRLFAFA-DP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD----SNFNSEVYNWNIYL 871 (873)
Q Consensus 809 ~p~l~~l~~~a-~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~----~~~~v~v~~~~i~~ 871 (873)
+|+++.+++.+ +. |++|+||||||+|||+++|+++ +.++++.+.+++. .+....+|.+++..
T Consensus 314 ~peld~lv~~a~~~~GAlGakltGaG~GG~vial~~~-~~~~~v~~~~~~~y~~~~~~~~~~~~~~~~~ 381 (386)
T TIGR00131 314 CPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPN-ENVDKVRQAVADKYPKKTGLELTFYVIVSKP 381 (386)
T ss_pred CHHHHHHHHHHHhcCCCcEEEEecCCCceEEEEEEcH-HHHHHHHHHHHHHHHHhhCCCCcEEEEEECC
Confidence 99999999875 44 9999999999999999999996 5677788877543 34577888877653
No 13
>PLN02677 mevalonate kinase
Probab=100.00 E-value=1.2e-36 Score=339.59 Aligned_cols=314 Identities=19% Similarity=0.196 Sum_probs=236.3
Q ss_pred EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEe----cCCcEEEEeCCCCceeeecCCCCCCC-
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETT----KMSGVLISDDAGNQLHIEDLTPIATP- 603 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~----~~~~i~i~~~~~~~~~~~~l~~l~~p- 603 (873)
+.++|||||+|+|||+|+. |+.++++||+++++ +.++++ +...|.+...+.......+.+++...
T Consensus 3 i~v~apgk~~l~Geh~~~~------g~~a~~~ai~~~~~----~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~l~~~~ 72 (387)
T PLN02677 3 VKARAPGKIILAGEHAVVH------GSTAVAAAIDLYTY----VSLRFPPSAENDDTLKLQLKDLGLEFSWPLARIKEAL 72 (387)
T ss_pred eEEeCCccEEEeeeeeeec------CCeeeeeEeeceEE----EEEEecCCCCCCCeEEEEcCCCCceEEechHhhhhhh
Confidence 7899999999999999995 99999999999988 667653 23344443222211111111111000
Q ss_pred -----CCCCChhHHHHHHHHHhh-hhhhc----------------------cccccCEEEEEeeccCCCCCCChHHHHHH
Q 002861 604 -----FDHNDPFRLVKSALLVTG-VIHEK----------------------LIESMGLQIRTWANVPRGSGLGTSSILAA 655 (873)
Q Consensus 604 -----~~~~~~~~~~kaal~~~~-~~~~~----------------------~~~~~G~~i~i~s~IP~GsGLGSSSAlav 655 (873)
.....++.+...++..+. .+.+. .....+++++|.|+||.|+|||||||++|
T Consensus 73 ~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~~~~~~~i~I~S~lP~GaGLGSSAAv~V 152 (387)
T PLN02677 73 PDLGTPCPSTPTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSILGFNPATVVVTSELPLGSGLGSSAAFCV 152 (387)
T ss_pred ccccccccccccccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhccCCCeEEEEEccCCCCCCccHHHHHHH
Confidence 011122233333333221 11100 01135799999999999999999999999
Q ss_pred HHHHHHHHHhCC-CC-------------CHHHHHHHHHHHHHH-cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEee
Q 002861 656 AVVKALLQITDG-DQ-------------SNENVARLVLLLEQL-MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPL 720 (873)
Q Consensus 656 A~l~Al~~~~g~-~l-------------s~~eL~~la~~~E~~-~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl 720 (873)
|++.|++.+++. +. +.++++++|..+|.. .|.++|+ |++++.+||+..++..+ ++++
T Consensus 153 a~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGi-D~a~s~~Gg~I~f~~~~-------~~~l 224 (387)
T PLN02677 153 ALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGI-DNTVSTYGNMIKFKSGE-------LTRL 224 (387)
T ss_pred HHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCch-hHHHHhcCCeEEEcCCC-------ceec
Confidence 999999999983 22 235788999999995 4889998 99999999988776432 3455
Q ss_pred cCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhc---------cCHHHHHH
Q 002861 721 LASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMN---------CDVDELGK 791 (873)
Q Consensus 721 ~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~---------gd~~~lg~ 791 (873)
+.+. +.+++|++||.+|+|+++++.|.+.+.+++..+...++.+.+++.++.++|++ +|++.|++
T Consensus 225 ~~~~------~l~llv~dTgv~~sT~~lV~~V~~~~~~~p~~~~~il~~~~~i~~~a~~al~~~~~~~~~~~~~~~~Lg~ 298 (387)
T PLN02677 225 QSNM------PLKMLITNTRVGRNTKALVAGVSERALRHPDAMKSVFNAVDSISEELATIIQSPAEDELSITEKEEKLKE 298 (387)
T ss_pred CCCC------CceEEEEECCCCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHH
Confidence 5432 46899999999999999999997777666666667788999999999999998 56999999
Q ss_pred HHHHHHHHHhhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCC---cchHHHHHHHHHhcCCCceEEEEEe
Q 002861 792 IMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKD---AESATELRRMLEKDSNFNSEVYNWN 868 (873)
Q Consensus 792 lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~---~~~a~~i~~~L~~~~~~~v~v~~~~ 868 (873)
+|+.+|.+++.|+ +++|.++.+++++++.++|+|+||||+|||+++|+++ ++.++++.+.|++. ..+.|+.+
T Consensus 299 lm~~N~~LL~~LG--VS~~~le~iv~~a~~~~~~AKlTGAGgGGC~IaL~~~~~~~~~~~~l~~~l~~~---G~~~~~~~ 373 (387)
T PLN02677 299 LMEMNQGLLQCMG--VSHSSIETVLRTTLKYKLVSKLTGAGGGGCVLTLLPTLLSGTVVDKVIAELESS---GFQCFTAG 373 (387)
T ss_pred HHHHHHHHHHHcC--CCcHHHHHHHHHHHHcCCccccccCCCCCEEEEEcccccchhHHHHHHHHHHHC---CCeEEEEE
Confidence 9999999999996 9999999999999987789999999999999999984 45678899999987 34667776
Q ss_pred ecc
Q 002861 869 IYL 871 (873)
Q Consensus 869 i~~ 871 (873)
+..
T Consensus 374 ~g~ 376 (387)
T PLN02677 374 IGG 376 (387)
T ss_pred eCC
Confidence 654
No 14
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=100.00 E-value=6.9e-37 Score=331.45 Aligned_cols=271 Identities=25% Similarity=0.329 Sum_probs=215.2
Q ss_pred eceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCChhHH
Q 002861 533 LPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRL 612 (873)
Q Consensus 533 aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~~~~~ 612 (873)
||||++|+|||+|+. ||.||++||+++++ +.++++++. +.+.++.... +.... +.....|.+|
T Consensus 1 aPgkv~L~GEH~v~~------g~~al~~aI~~~~~----~~~~~~~~~-~~i~~~~~~~----~~~~~--~~~~~~~~~~ 63 (273)
T TIGR00549 1 APGKIILFGEHAVVY------GEPAIAAPIPLRTT----VTVIESSDG-SFIESDLGRG----SLDDA--PQELDGLVSY 63 (273)
T ss_pred CCceEEEEecChhcc------CCCeeEEEecccEE----EEEEEcCCC-ceEeccccCC----cHhHh--hHHHHHHHHH
Confidence 699999999999995 99999999999987 667676554 4444332210 01111 1122458899
Q ss_pred HHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-cCCCChh
Q 002861 613 VKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-MGTGGGW 691 (873)
Q Consensus 613 ~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~-~g~~~G~ 691 (873)
+++++..+.. ....+++|++.|+||.|+|||||||+++|++.|++++++.++++++++++|..+|+. .|.++|.
T Consensus 64 v~~~l~~~~~-----~~~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG~ 138 (273)
T TIGR00549 64 IAEALSYFSE-----LNPPPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSGI 138 (273)
T ss_pred HHHHHHHhhc-----cCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCchH
Confidence 9999887642 112359999999999999999999999999999999999999999999999999984 6889996
Q ss_pred hhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 002861 692 QDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLT 771 (873)
Q Consensus 692 ~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~ 771 (873)
||+++++||+.+++...+. .++..+ ++.++++++|+.+++|+++++.+.+.....++.....++++.
T Consensus 139 -D~~~~~~Gg~~~~~~~~~~------~~~~~~------~~~~lvl~~tg~~~~T~~~~~~v~~~~~~~~~~~~~~~~~~~ 205 (273)
T TIGR00549 139 -DTATSTYGGPVYFEKGEGE------FTKLIS------LDGYFVIADTGVSGSTKEAVARVRQLLERFPELIDSIMDAIG 205 (273)
T ss_pred -hHHHHhcCCeEEEEcCCCc------eeeccC------CCeEEEEEECCCCCcHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9999999999987643321 222222 246899999999999999988764433222223344567777
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEE
Q 002861 772 ELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLL 840 (873)
Q Consensus 772 ~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l 840 (873)
+++.++.++|.++|++.||++|+++|..++++ ++++|++++|++.+++ |++|+||||||+|||+++|
T Consensus 206 ~~~~~~~~al~~~d~~~lg~l~~~~~~~l~~~--~vs~p~l~~l~~~~~~~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 206 ELTLEAKAALQDGDVESLGELMNINQGLLKAL--GVSHPKLDQLVETARKAGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHCCCceeeeccCCCCceEEeC
Confidence 88899999999999999999999999988887 4899999999999987 8999999999999999985
No 15
>PLN02521 galactokinase
Probab=100.00 E-value=6.7e-36 Score=343.54 Aligned_cols=319 Identities=19% Similarity=0.203 Sum_probs=227.0
Q ss_pred EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecC-CcEEEEeCCCCc-eeeecCCCCC-CCCC
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKM-SGVLISDDAGNQ-LHIEDLTPIA-TPFD 605 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~-~~i~i~~~~~~~-~~~~~l~~l~-~p~~ 605 (873)
..++|||||+|+|||+||. ||.||++||+++++ +.++++++ ..+++.+..... ....+++... .+..
T Consensus 49 ~~~~APGRVnLiGEHtDy~------gg~vLp~AI~~~~~----v~~~~~~~~~~i~i~s~~~~~~~~~~~~~~~~~~~~~ 118 (497)
T PLN02521 49 LFARSPGRVNLIGEHIDYE------GYSVLPMAIRQDTI----VAIRRAEGSKKLRIANVNDKYTTCTFPADPDQEVDLA 118 (497)
T ss_pred EEEECCceEEEeccceeec------CCeEEEEEEcCcEE----EEEEEcCCCCEEEEEECCCCCCceeeecCcccccccc
Confidence 7789999999999999996 99999999999987 77888765 677776543321 1122222211 1112
Q ss_pred CCChhHHH----HHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 002861 606 HNDPFRLV----KSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL 681 (873)
Q Consensus 606 ~~~~~~~~----kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~ 681 (873)
...|.+|+ ++++..+...........|+++.|.++||.|+|||||||+++|++.|++++++.++++++|+++|+.+
T Consensus 119 ~~~W~nYv~~~~~gv~~~l~~~~~~~~~~~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~ 198 (497)
T PLN02521 119 NHKWGNYFICGYKGVFEFLKSKGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKC 198 (497)
T ss_pred cccHHHHHHHHHHHHHHHHHHhccccCCCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 34699999 55555443110001123599999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCChhhhhHhhccc--Cee-EEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcch---H----------
Q 002861 682 EQLMGTGGGWQDQIGGLYP--GIK-FTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRL---A---------- 745 (873)
Q Consensus 682 E~~~g~~~G~~Dq~~~~~G--G~~-~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~---t---------- 745 (873)
|+++|+++|+|||+++++| |.. ++++. ++ .++++++|. +..|+|++|+.++. +
T Consensus 199 E~~~g~~~g~mDq~as~~g~~g~al~~d~~---~l--~~~~v~~p~------~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ 267 (497)
T PLN02521 199 ERHIGTQSGGMDQAISIMAQQGVAKLIDFN---PV--RATDVQLPA------GGTFVIANSLAESNKAVTAATNYNNRVV 267 (497)
T ss_pred hCccCCCCChHHHHHHHhcCCCcEEEEecC---CC--ceEEeecCC------CcEEEEEECCCcccccccccccccHHHH
Confidence 9999999999999999999 443 33333 33 345565554 46899999884432 2
Q ss_pred -----HHHHHH------------------HHHH------------------------------Hhh--c-C---------
Q 002861 746 -----HQVLQK------------------VVTR------------------------------YLQ--R-D--------- 760 (873)
Q Consensus 746 -----~~~l~~------------------v~~~------------------------------~~~--~-~--------- 760 (873)
..++++ +... +.. . .
T Consensus 268 ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~ 347 (497)
T PLN02521 268 ECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSP 347 (497)
T ss_pred HHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhcccccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccc
Confidence 122221 0000 000 0 0
Q ss_pred ------------HHHHHHHHHHHH--HHHHHHHHHhcc-----CHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc
Q 002861 761 ------------NLLISSIKRLTE--LAKNGRDALMNC-----DVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP 821 (873)
Q Consensus 761 ------------~~~~~~~~~i~~--~~~~~~~AL~~g-----d~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~ 821 (873)
....+..+.+.+ .+.++.++|+++ ++..||++|+++|+++++++ ++++|++|.|++.+++
T Consensus 348 ~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~-~vS~~elD~lv~~a~~ 426 (497)
T PLN02521 348 TSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLY-ECSCPELEELVKVCRD 426 (497)
T ss_pred cccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhcc-CCCcHHHHHHHHHHHh
Confidence 000111111112 256777888776 38999999999999999987 5999999999999987
Q ss_pred -CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhcC-------------CCceEEEEEeec
Q 002861 822 -YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDS-------------NFNSEVYNWNIY 870 (873)
Q Consensus 822 -ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~~-------------~~~v~v~~~~i~ 870 (873)
|++|+||||||+|||+++|++. +.++++.+.+.+.. +....+|.+++.
T Consensus 427 ~Ga~GaRltGaG~GG~~i~lv~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~ 488 (497)
T PLN02521 427 NGALGARLTGAGWGGCAVALVKE-AIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKPS 488 (497)
T ss_pred cCCcEEEECCCCCCeEEEEEECH-HHHHHHHHHHHHHHHhhccccccccccCCCCcEEEEecC
Confidence 9999999999999999999996 56777777765431 234567776654
No 16
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-38 Score=340.96 Aligned_cols=213 Identities=17% Similarity=0.204 Sum_probs=184.0
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
+||||||+|||++|+. ++||+|+++.|+|.++|+.|||+.+|+++ +|.+|.|||... +
T Consensus 125 lsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim~~D~~~---------~i~~F~eKp~~~---------~ 186 (393)
T COG0448 125 LSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENG---------RIIEFVEKPADG---------P 186 (393)
T ss_pred ecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCceEECCCC---------CEEeeeeccCcC---------C
Confidence 5899999999999999 89999999999999999999999999999 899999999882 3
Q ss_pred CCccceeeceeeecchHHHHHHhhhc----CCchhhhhhhccccchhhhHHHHhhcccccccccccCCCc--hhHHhh--
Q 002861 77 DGRALLDTGIIAVRGKAWEELVMLSC----SCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRPLG--KELVSK-- 148 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~~ll~~~~----~~~d~g~d~~~~~~~~~~y~df~~~~~~~~~~Y~~~~pvg--d~~~~~-- 148 (873)
+...++|||||+|+++.|.++|+.+. +.|||||+++ |..+....-++|.| ..||+| +| ++||++
T Consensus 187 ~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiI--p~~~~~~~v~AY~f----~gYw~d--VgTi~syy~aNm 258 (393)
T COG0448 187 PSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDII--PKLLERGKVYAYEF----SGYWRD--VGTIDSYYEANM 258 (393)
T ss_pred cccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHH--HHHHhcCCEEEEec----cchhhh--cccHHHHHHhhH
Confidence 36679999999999999999999885 5599999999 55555444555555 349999 97 999998
Q ss_pred --hhcCcceE------------EEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecC
Q 002861 149 --LGKQRMFS------------YCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAH 214 (873)
Q Consensus 149 --l~~~~i~~------------~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~ 214 (873)
|...|.+. ..+||++|.+. ..+.+|++++ |||++| .|.||||+.
T Consensus 259 dLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~--------------------s~v~nSLv~~-GciI~G-~V~nSVL~~ 316 (393)
T COG0448 259 DLLSPQPELNLYDRNWPIYTKNKNLPPAKFVND--------------------SEVSNSLVAG-GCIISG-TVENSVLFR 316 (393)
T ss_pred HhcCCCCcccccCCCCceeecCCCCCCceEecC--------------------ceEeeeeeeC-CeEEEe-EEEeeEEec
Confidence 44455442 36788888863 2367788876 899988 999999999
Q ss_pred CceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeeee
Q 002861 215 GVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEV 271 (873)
Q Consensus 215 ~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~v 271 (873)
+|+|+++|+|++|+|+++|.||+||.|++||||++ ++||+|+.|..-
T Consensus 317 ~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~----------v~I~~g~~i~~~ 363 (393)
T COG0448 317 GVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKN----------VVIGEGVVIGGD 363 (393)
T ss_pred CeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCC----------cEeCCCcEEcCC
Confidence 99999999999999999999999999999999998 999999976444
No 17
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=2.4e-35 Score=316.85 Aligned_cols=293 Identities=24% Similarity=0.274 Sum_probs=241.0
Q ss_pred EEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCCh
Q 002861 530 KVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDP 609 (873)
Q Consensus 530 ~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~~ 609 (873)
.+++|||+.|+|||.-+- |-.++.+||+++.+ ++++..++..+.+.+.+.... .+. .+. .
T Consensus 2 ~~~aPgKliL~GEHAVVy------G~pAI~~aI~~~~~----v~~~~s~~~~~~i~~~~~~~~------~~~--~~~--~ 61 (307)
T COG1577 2 SVSAPGKLILFGEHAVVY------GYPAIAAAIDLRVT----VTISESDSNKIVIESSDLKSS------TLE--RDE--D 61 (307)
T ss_pred cccccccEEEEecceeee------CCchhheeeeeeEE----EEEEecCCCcEEEeccCCCCc------ccc--ccc--c
Confidence 578999999999998773 77899999999987 778777666677765433210 111 111 1
Q ss_pred hHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc-CCC
Q 002861 610 FRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM-GTG 688 (873)
Q Consensus 610 ~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~-g~~ 688 (873)
..|++.++..+..+..+ ....||+++|.|+||.|+|||||||+++|++.|+++++|.+++++++++++..+|... |.+
T Consensus 62 ~~~~~~~v~~~~e~~~~-~~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~ 140 (307)
T COG1577 62 EGYIQAAVRLASELLNQ-SSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKA 140 (307)
T ss_pred chHHHHHHHHHHHHhcc-cCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 25777777766532111 2357999999999999999999999999999999999999999999999999999965 667
Q ss_pred ChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHH
Q 002861 689 GGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIK 768 (873)
Q Consensus 689 ~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~ 768 (873)
+| .|.+.+++||+..++... .++++.++. ...|++.|||.+.+|+++++.|.....+.++.+...++
T Consensus 141 Sg-~D~a~~~~gg~v~~~~~~------~~~~l~~~~------~~~~~I~~tg~~~sT~e~V~~V~~l~~~~~~~~~~~~~ 207 (307)
T COG1577 141 SG-IDIATITYGGLVAFKKGF------DFEKLEIEL------LGTLVIGDTGVPGSTKELVAGVAKLLEEEPEVIDPILD 207 (307)
T ss_pred Cc-ccceEEEeCCEEEEecCC------Ccccccccc------CCeEEEEEcCCcCcHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 76 489999999999987532 234554432 22799999999999999999887665566666778899
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcchH
Q 002861 769 RLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAESA 847 (873)
Q Consensus 769 ~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~a 847 (873)
.+.+++.++..+|+++|.+.||++|+.+|.+++.+. +++|++++|++.+++ |+.|+|+||||+|||+++|+++.+.+
T Consensus 208 ~ig~~~~~a~~al~~~d~e~lgelm~~nq~LL~~Lg--Vs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~IaL~~~~~~~ 285 (307)
T COG1577 208 AIGELVQEAEAALQTGDFEELGELMNINQGLLKALG--VSTPELDELVEAARSLGALGAKLTGAGGGGCIIALAKNEEIA 285 (307)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcC--cCcHHHHHHHHHHHhcCccccccccCCCCceEEEEeccchHH
Confidence 999999999999999999999999999999999996 999999999999997 99999999999999999999975667
Q ss_pred HHHHHHHHhcC
Q 002861 848 TELRRMLEKDS 858 (873)
Q Consensus 848 ~~i~~~L~~~~ 858 (873)
+.+...+.+++
T Consensus 286 ~~l~~~~~~~~ 296 (307)
T COG1577 286 ETLSNRLEKAG 296 (307)
T ss_pred HHHHHHHHhcC
Confidence 88888888874
No 18
>PRK03926 mevalonate kinase; Provisional
Probab=100.00 E-value=3e-34 Score=315.26 Aligned_cols=290 Identities=21% Similarity=0.249 Sum_probs=225.8
Q ss_pred EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND 608 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~ 608 (873)
+.++|||||+|+|+|+|+. ||.++++||+++.+ +++++.++ .+.+..... .. ..
T Consensus 2 ~~~~aPgkv~L~Geh~~~~------g~~~l~~aI~~~~~----v~i~~~~~-~~~i~~~~~---------~~------~~ 55 (302)
T PRK03926 2 VLCSAPGKIYLFGEHAVVY------GKPAIACAIDLRTY----VRAEFNDD-SIYIESDYG---------KT------GE 55 (302)
T ss_pred eEEeeeeEEEEEecceeec------CCeEEEEEecceEE----EEEEECCC-ceEEecccc---------cc------cc
Confidence 6789999999999999995 99999999999987 67776543 233332110 00 12
Q ss_pred hhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-cCC
Q 002861 609 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-MGT 687 (873)
Q Consensus 609 ~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~-~g~ 687 (873)
|..++++++..+.. .....|++|++.++||.|+|||||||+++|++.|++++++.++++++++++|..+|.. .|.
T Consensus 56 ~~~~~~~~~~~~~~----~~~~~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~ 131 (302)
T PRK03926 56 KHPYVSAAIEKMRE----EADKDGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGA 131 (302)
T ss_pred hhHHHHHHHHHHHH----hcCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCC
Confidence 44577777765532 1123499999999999999999999999999999999999999999999999999995 577
Q ss_pred CChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHH
Q 002861 688 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSI 767 (873)
Q Consensus 688 ~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~ 767 (873)
++| +|++++++||+.++.... +++.+ ++.++|++|+.+++|+++++.+.......++.+...+
T Consensus 132 ~sg-~D~~~~~~Gg~~~~~~~~---------~l~~~-------~~~~vl~~~~~~~sT~~~~~~~~~~~~~~~~~~~~~~ 194 (302)
T PRK03926 132 ASP-TDTYVSTMGGFVTIPDRK---------KLPFP-------ECGIVVGYTGSSGSTKELVANVRKLKEEYPELIEPIL 194 (302)
T ss_pred Cch-HHHHHHhcCCeEEEcCCC---------cCCCC-------CceEEEEECCCCCcHHHHHHHHHHHHHhCHHHHHHHH
Confidence 777 699999999998765321 23221 4578999999999999988776432222222222345
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcch
Q 002861 768 KRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAES 846 (873)
Q Consensus 768 ~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~ 846 (873)
+.+.+++.++..++.++|++.|+++|+++|..++.+ ++++|+++++++.+.+ |++|+||||||+|||+++++++ +.
T Consensus 195 ~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~~~~~~--~~~~p~l~~l~~~~~~~ga~ga~lSGaG~Gg~v~~l~~~-~~ 271 (302)
T PRK03926 195 SSIGKISEKGEELILSGDYVSLGELMNINQGLLDAL--GVSTKELSELIYAARTAGALGAKITGAGGGGCMVALAAP-EK 271 (302)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHhCCCceeeeccCCCCCEEEEEecc-cc
Confidence 556677778889999999999999999999776665 4789999999999876 8999999999999999999986 46
Q ss_pred HHHHHHHHHhcCCCceEEEEEeecc
Q 002861 847 ATELRRMLEKDSNFNSEVYNWNIYL 871 (873)
Q Consensus 847 a~~i~~~L~~~~~~~v~v~~~~i~~ 871 (873)
++++.+.+++. ..++|..+++.
T Consensus 272 ~~~~~~~~~~~---~~~~~~~~~~~ 293 (302)
T PRK03926 272 QSEVATAIKIA---GGKPIITKITD 293 (302)
T ss_pred HHHHHHHHHhc---CCeEEEEecCC
Confidence 78888888875 34567776654
No 19
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=1.9e-34 Score=323.02 Aligned_cols=313 Identities=23% Similarity=0.227 Sum_probs=227.1
Q ss_pred EEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCCh
Q 002861 530 KVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDP 609 (873)
Q Consensus 530 ~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~~ 609 (873)
.++|||||+|+|||+|+. ||.|+++||+++++ +++++. ..+.+.+..........++++. ...+|
T Consensus 2 ~~~APgrv~L~Geh~d~~------~g~~l~~aI~~~~~----v~~~~~--~~~~i~~~~~~~~~~~~~~~~~---~~~~~ 66 (351)
T PRK03817 2 KVKSPGRVNLIGEHTDYN------DGYVLPFAINLYTF----LEIEKS--EKFIFYSENFNEEKTFELDKLE---KLNSW 66 (351)
T ss_pred EEEeeeeEEEeccceeeC------CCeEEEEEecCcEE----EEEEeC--CeEEEEECCCCCcEEEeCCccC---CCCch
Confidence 578999999999999985 99999999999987 677665 3466665443321222333321 23468
Q ss_pred hHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HcCCC
Q 002861 610 FRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LMGTG 688 (873)
Q Consensus 610 ~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~~g~~ 688 (873)
.+++++++..+.. ......|+++++.++||.|+|||||||+++|++.|++++++.++++++++++|..+|. ..|++
T Consensus 67 ~~~~~~~~~~~~~---~~~~~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~ 143 (351)
T PRK03817 67 ADYIKGVIWVLEK---RGYEVGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVP 143 (351)
T ss_pred HHHHHHHHHHHHH---cCCCCCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCC
Confidence 8899998876531 2234579999999999999999999999999999999999999999999999999998 46999
Q ss_pred ChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHH--------HHHHHHHHHHh---
Q 002861 689 GGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH--------QVLQKVVTRYL--- 757 (873)
Q Consensus 689 ~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~--------~~l~~v~~~~~--- 757 (873)
+|++||+++.+|+.......+..+. .+.++++++ +.++++++|+.++.+. ....++.+.+.
T Consensus 144 ~g~~D~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~------~~~~vv~~sg~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 215 (351)
T PRK03817 144 CGIMDQFAVAFGKKDHAIFLDTMTL--EYEYVPFPE------DYEILVFDTGVKRELASSEYNERRQECEEALKILGKKS 215 (351)
T ss_pred CcCchhhheeeccCCEEEEEecCCC--ceEEEecCC------CcEEEEEeCCCccccccchhHHHHHHHHHHHHHhCccc
Confidence 9999999999986432222222222 234555543 4689999999766532 11112111110
Q ss_pred ----------hcCHHHHHHHHHHH---HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CC
Q 002861 758 ----------QRDNLLISSIKRLT---ELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YC 823 (873)
Q Consensus 758 ----------~~~~~~~~~~~~i~---~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga 823 (873)
.-++...+.+..+. +.+.++..||.++|++.||++|+++|..+++.+ ++++|++++|++.+++ |+
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~~-~~s~p~ld~l~~~a~~~Ga 294 (351)
T PRK03817 216 SKEVTEEDLSKLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNY-EVSCEELDFFVEFALELGA 294 (351)
T ss_pred hhcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHcCC
Confidence 00111111111111 124678889999999999999999998877654 3789999999999987 99
Q ss_pred ceEEecCCCccceeEEEeCCcchHHHHHHHHHhc----CCCceEEEEEeec
Q 002861 824 CGYKLVGAGGGGFALLLAKDAESATELRRMLEKD----SNFNSEVYNWNIY 870 (873)
Q Consensus 824 ~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~----~~~~v~v~~~~i~ 870 (873)
+|+|+||||+|||+++|+++ +.++++.+.+++. .++.+++|.+.++
T Consensus 295 lGaklsGaG~Gg~vlal~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 344 (351)
T PRK03817 295 YGARLTGAGFGGSAIALVDK-GKFESIGEELLEEYKKRFGIDPKYFVVESS 344 (351)
T ss_pred CEEEEecCCCCeEEEEEEch-HHHHHHHHHHHHHHHHhcCCCCcEEEEecC
Confidence 99999999999999999986 5666776666553 3467778777653
No 20
>PTZ00298 mevalonate kinase; Provisional
Probab=100.00 E-value=7.2e-33 Score=306.96 Aligned_cols=306 Identities=18% Similarity=0.159 Sum_probs=225.5
Q ss_pred EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEec-CCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTK-MSGVLISDDAGNQLHIEDLTPIATPFDHN 607 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~-~~~i~i~~~~~~~~~~~~l~~l~~p~~~~ 607 (873)
...++||||.|+|||++.- |...|.++|+++.+ ++++..+ +..+.+..... .+ +....
T Consensus 11 ~~~~~~~kvil~GEHaVvy------g~~aI~~~I~~~d~----~~i~~~~~~~~~~~~~~~~---------~~--~~~~~ 69 (328)
T PTZ00298 11 GKHIGYGKVILFGEHFVVY------GAEAIVAGIDEYTE----CRLELTKGVPGLQVVDQRP---------AV--PGYIV 69 (328)
T ss_pred cCCCcCeeEEEEecceeec------CCchhhhecccceE----EEEEEccCCCCceeccccc---------cc--cchHH
Confidence 5678999999999999984 88999999999865 4555332 22222211100 01 10000
Q ss_pred ChhHH-HHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-Hc
Q 002861 608 DPFRL-VKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LM 685 (873)
Q Consensus 608 ~~~~~-~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~-~~ 685 (873)
+--++ .|++........ ......|++|+|.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|+ +.
T Consensus 70 ~~~n~~~~a~~~~~~~~~-~~~~~~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~ 148 (328)
T PTZ00298 70 EKREEQRKAHQLVLRHLN-IDTSVDGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYH 148 (328)
T ss_pred HhHHHHHHHHHHHHHHHh-cccCCCCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc
Confidence 01122 233222221110 0011258999999999999999999999999999999999999999999999999999 46
Q ss_pred CCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHH
Q 002861 686 GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLIS 765 (873)
Q Consensus 686 g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~ 765 (873)
|.++|. |++++++||+.+++...+. ..+.|+++++ +..+++++|+.+++|.++++.+.+.....+..+..
T Consensus 149 g~~sG~-D~~~~~~Gg~~~~~~~~g~---~~~~~l~~~~------~~~lvv~~~~~~~sT~~~~~~v~~~~~~~p~~~~~ 218 (328)
T PTZ00298 149 GTPSGA-DNTAATYGGLISYRRVNGK---SVFKRIAFQQ------PLYLVVCSTGITASTTKVVGDVRKLKENQPTWFNR 218 (328)
T ss_pred CCCChH-HHHHHHcCCeEEEecCCCc---cceeEecCCC------CCeEEEEECCCchhHHHHHHHHHHHHhcCHHHHHH
Confidence 889997 8899999999987754332 2345665443 45799999999999999987654322222223344
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCc
Q 002861 766 SIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDA 844 (873)
Q Consensus 766 ~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~ 844 (873)
.++++.+++.++..+|.++|++.++++|+++|+.++.+. +++|+++++++.+++ |++|+||||||+|||+++|++++
T Consensus 219 ~~~~~~~~~~~~~~al~~~d~~~lg~~m~~~~~~l~~~~--v~~p~l~~l~~~~~~~Ga~gaklSGsG~GG~v~al~~~~ 296 (328)
T PTZ00298 219 LLENYNACVSEAKEALQKGNLFRVGELMNANHDLCQKLT--VSCRELDSIVQTCRTYGALGAKMSGTGRGGLVVALAASE 296 (328)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHhCCCceeEeccCCCCeEEEEEecch
Confidence 566777788899999999999999999999998888774 789999999999987 89999999999999999999876
Q ss_pred chHHHHHHHHHhcCC--CceEEEEEe
Q 002861 845 ESATELRRMLEKDSN--FNSEVYNWN 868 (873)
Q Consensus 845 ~~a~~i~~~L~~~~~--~~v~v~~~~ 868 (873)
+.++++.+.+++... -...++.+.
T Consensus 297 ~~a~~~~~~l~~~~~~~~~~w~~~~~ 322 (328)
T PTZ00298 297 DQRDAIAKAVRARCPEAKFVWRYTVQ 322 (328)
T ss_pred hhHHHHHHHHHHHhhhcCCeEEEEec
Confidence 778888888877532 234455443
No 21
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.97 E-value=3.6e-28 Score=255.09 Aligned_cols=304 Identities=19% Similarity=0.215 Sum_probs=217.8
Q ss_pred EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCC---------
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTP--------- 599 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~--------- 599 (873)
..|+|||||.|+|||... ||...+.+||+++++ +++.+..+..|.+.-.+..-....++.+
T Consensus 5 l~vsaPGKvILfGEHAVV------yg~~AlAaai~LrTy----l~l~~san~~i~l~l~di~~~~~w~l~~~~~~l~~~~ 74 (397)
T KOG1511|consen 5 LLVSAPGKVILFGEHAVV------YGRTALAAAIDLRTY----LRLQTSANDRILLQLPDISIEKAWSLADFNGALPEQR 74 (397)
T ss_pred eeecCCccEEEeccceeE------ECCceeEEEeeccee----EEEEecCCCeEEEecccCCceEEEEhhhhhhhhhhhh
Confidence 578999999999999876 599999999999998 5665665566665422222112222222
Q ss_pred -----CCCCCCC--------------CChhH-HHHHHHHHhhhhhhccccccC----EEEEEeeccCCCCCCChHHHHHH
Q 002861 600 -----IATPFDH--------------NDPFR-LVKSALLVTGVIHEKLIESMG----LQIRTWANVPRGSGLGTSSILAA 655 (873)
Q Consensus 600 -----l~~p~~~--------------~~~~~-~~kaal~~~~~~~~~~~~~~G----~~i~i~s~IP~GsGLGSSSAlav 655 (873)
.++|... +...- ...+++..+...-.-....+| +.+.++|.+|.|+|||||||+.|
T Consensus 75 ~~~~~~q~p~~~~~~e~~k~l~~l~~~~~~~~~~~a~~~~lYlf~~l~~~~~g~lp~~~v~v~SelP~GaGLGSSAa~sv 154 (397)
T KOG1511|consen 75 STYESVQTPASEVRVELLKQLGGLLENQEKVKEHLAGLSFLYLFLGLCLRAPGTLPALTVVVDSELPLGAGLGSSAAISV 154 (397)
T ss_pred hhhhccCCcchhhhHHHHHHhhhhhhcchhhhHHHHHHHHHHHHHHhhhcccCCCcceEEEEeccCCCcCCcchhHHHHH
Confidence 1111100 00000 111111111000000113345 99999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCH-----------HHHHHHHHHHHHHc-CCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCC
Q 002861 656 AVVKALLQITDGDQSN-----------ENVARLVLLLEQLM-GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLAS 723 (873)
Q Consensus 656 A~l~Al~~~~g~~ls~-----------~eL~~la~~~E~~~-g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~ 723 (873)
+++.++..++|.--++ +-|-+.|.+.|..+ |+|+|+ |.+.+.|||...+. .|. +++.++..
T Consensus 155 ~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGi-DnaV~t~Gg~i~f~--kg~----~~~~Lk~~ 227 (397)
T KOG1511|consen 155 ALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGI-DNAVCTYGGLISFK--KGV----EIESLKHL 227 (397)
T ss_pred HHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCccc-chhhhccCceEEee--cCc----cceecccC
Confidence 9999999988864222 34567888888854 899999 55679999997765 342 23444433
Q ss_pred hhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhcc----CHH---HHHHHHHHH
Q 002861 724 PQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNC----DVD---ELGKIMLEA 796 (873)
Q Consensus 724 ~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~g----d~~---~lg~lm~~~ 796 (873)
+ ..++++++|.++|+|+.+++.|..+..+.++.+...+..+.+++.++...+.++ +.. .|.++|..+
T Consensus 228 ~------~L~illtnTrv~RnTk~lVa~Vr~~~~kfPevi~~i~~aid~is~ea~~il~~e~~~~~~~~Eq~L~eLi~iN 301 (397)
T KOG1511|consen 228 P------PLRILLTNTRVPRNTKALVAGVRELLEKFPEVIKAIFDAIDEISLEAVWILQRENDEFSSPKEQKLEELIRIN 301 (397)
T ss_pred C------CceEEEEccccCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHh
Confidence 2 458999999999999999999877665556666677888888999999999842 222 599999999
Q ss_pred HHHHhhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCCcc---hHHHHHHHHHhc
Q 002861 797 WRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAE---SATELRRMLEKD 857 (873)
Q Consensus 797 ~~~~~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~---~a~~i~~~L~~~ 857 (873)
+.++..++ +++|.++.++...++..+.+||||||+|||++.|.+... ..+.+++.|+..
T Consensus 302 q~LL~alG--VsH~~le~v~~~t~k~gi~sKLTGAGgGGc~itlL~~~~~qe~i~~~ke~L~s~ 363 (397)
T KOG1511|consen 302 QDLLDALG--VSHPSLELVCTTTRKLGIHSKLTGAGGGGCVITLLKPGTEQEQIDKWKEELESH 363 (397)
T ss_pred HHHHHHhC--CCcHHHHHHHHHHHHhCcceecccCCCCceEEEEECCCCchHHHHHHHHHHHhc
Confidence 99999995 999999999999999788889999999999999998643 566777777776
No 22
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.94 E-value=1.7e-25 Score=244.05 Aligned_cols=276 Identities=18% Similarity=0.160 Sum_probs=201.0
Q ss_pred EEEEeceEEEe----ecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCC
Q 002861 529 VKVELPVRIDF----AGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPF 604 (873)
Q Consensus 529 v~v~aP~Rv~L----~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~ 604 (873)
+.++||||||| .|.|.|- | |...++.+||+++.+ +++++.++..+.+..... . .|.
T Consensus 3 ~~~~apakinl~l~i~g~~~dg--~---h~l~si~~ai~l~~~----v~v~~~~~~~~~i~~~~~---------~--~~~ 62 (286)
T PRK00128 3 ILEKAPAKINLSLDVLGKREDG--Y---HEVEMIMQTIDLADR----LEIEKLKEDGIVVESNNR---------Y--VPN 62 (286)
T ss_pred EEEeccceEEEEeecCccCCCC--c---ceeheeeEecCCCcE----EEEEECCCCCEEEEeCCC---------C--CCC
Confidence 67899999999 7999882 2 688999999999997 778776554455543211 1 121
Q ss_pred CCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 002861 605 DHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL 684 (873)
Q Consensus 605 ~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~ 684 (873)
+ +.+++..++..+. +.+....|++|++.++||.|+|||||||+++|++.|++++++.++++++++++|.++|.
T Consensus 63 ~---~~n~~~~~~~~~~---~~~~~~~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g~- 135 (286)
T PRK00128 63 D---ERNLAYKAAKLLK---ERYNIKQGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIGS- 135 (286)
T ss_pred C---CCcHHHHHHHHHH---HhcCCCCCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCC-
Confidence 1 2234444444332 12223468999999999999999999999999999999999999999999999988863
Q ss_pred cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHH
Q 002861 685 MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLI 764 (873)
Q Consensus 685 ~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~ 764 (873)
|++++++||+.+.... +. .+.+++.++ +..+++++|+...+|.++++.+..... .
T Consensus 136 --------dv~~~~~Gg~~~~~~~-g~----~~~~~~~~~------~~~~vv~~p~~~~~T~~~~~~~~~~~~-~----- 190 (286)
T PRK00128 136 --------DVPFCIYGGTALATGR-GE----KITPLKSPP------SCWVVLAKPDIGVSTKDVYKNLDLDKI-S----- 190 (286)
T ss_pred --------CCCeEeeCCeEEEecC-Cc----ccccCCCCC------CcEEEEEcCCCCCCHHHHHhcCccccc-c-----
Confidence 8889999999887643 32 234554332 457999999999999987765311100 0
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCC
Q 002861 765 SSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKD 843 (873)
Q Consensus 765 ~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~ 843 (873)
...+..+..++.++|++.++++|.+..+..+. ...|+++++++.+++ |++|+++||||+ ++++|+++
T Consensus 191 ------~~~~~~~~~~l~~~d~~~~~~~~~n~l~~~~~----~~~p~l~~l~~~~~~~Ga~g~~lSGsG~--sv~~l~~~ 258 (286)
T PRK00128 191 ------HPDTEKLIEAIEEGDYQGICANMGNVLENVTL----KKYPEIAKIKERMLKFGADGALMSGSGP--TVFGLFDD 258 (286)
T ss_pred ------CcchHHHHHHHhcCCHHHHHHhccCcHHHHHH----hhChHHHHHHHHHHhcCCCeeEEcccCc--cEEEEeCC
Confidence 11234678899999999999988754432221 136899999999987 899999999996 99999987
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEeecc
Q 002861 844 AESATELRRMLEKDSNFNSEVYNWNIYL 871 (873)
Q Consensus 844 ~~~a~~i~~~L~~~~~~~v~v~~~~i~~ 871 (873)
++.++++.+.+++.. ..++..++..
T Consensus 259 ~~~~~~i~~~l~~~~---~~~~~~~~~~ 283 (286)
T PRK00128 259 ESRAQRIYNGLKGFC---KEVYLVRTLG 283 (286)
T ss_pred HHHHHHHHHHhHhhc---CcEEEEeeec
Confidence 667889999998752 2455555543
No 23
>PLN02451 homoserine kinase
Probab=99.94 E-value=1e-24 Score=243.93 Aligned_cols=305 Identities=18% Similarity=0.123 Sum_probs=210.3
Q ss_pred CCCCCCeEEEEeceEEEeecccccCCCcccCCCCeEEEeeee-cccccceeEEEEEecC---CcEEEEeCCCCceeeecC
Q 002861 522 HPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAIS-LESSLPIGTIIETTKM---SGVLISDDAGNQLHIEDL 597 (873)
Q Consensus 522 ~~~~~~~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~-l~~~~pi~~~v~~~~~---~~i~i~~~~~~~~~~~~l 597 (873)
.++.-..+.+++|+++.++|.++|+ +++|++ +|.+ +++++.+. ..+.+....+. .
T Consensus 47 ~~~~~~~~~~~aPA~~ANLGpgfD~-----------lG~a~d~l~d~----v~~~~~~~~~~~~~~i~~~~g~------~ 105 (370)
T PLN02451 47 PEPVFTSVKAFAPATVANLGPGFDF-----------LGCAVDGLGDF----VTARVDPGVRPGEVSISEITGD------T 105 (370)
T ss_pred chhhcceEEEEeccchhhcccChhh-----------hhhhhccCcCE----EEEEECCCCCcccEEEEEeccc------c
Confidence 3334457999999999999999998 788888 9987 77776543 24555431111 0
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 002861 598 TPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARL 677 (873)
Q Consensus 598 ~~l~~p~~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~l 677 (873)
+.+ |.++.+.. ..+++...+.. ......|++|++.++||.|+|||||||+++|++.|+++++|.++++++|+++
T Consensus 106 ~~l--~~~~~~Nl-v~~a~~~~~~~---~g~~~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~l 179 (370)
T PLN02451 106 GRL--SKDPLRNC-AGIAAIATMKL---LGIRSVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLA 179 (370)
T ss_pred ccC--CCCcccCc-HHHHHHHHHHH---cCCCCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 112 22211111 23444333221 1122469999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHh
Q 002861 678 VLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYL 757 (873)
Q Consensus 678 a~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~ 757 (873)
+.++|..... .+.||.+++++||+.+....+. . .+.+++++. ..++++++++++...+|+++.+.+.+.+
T Consensus 180 a~~~E~~v~g-~h~Dnva~a~~GG~v~~~~~~~--~--~~~~~~~p~----~~~~~~Vlv~P~~~~sT~~ar~~lp~~~- 249 (370)
T PLN02451 180 GLESEAKVSG-YHADNIAPALMGGFVLIRSYEP--L--HLIPLRFPS----AKDLFFVLVSPDFEAPTKKMRAALPKEI- 249 (370)
T ss_pred HHHHhchhcC-CCccchhHhhcCCEEEEEecCC--C--eEEEeecCC----CCCeEEEEEcCCCCccHHHHHHHHhhhc-
Confidence 9999984321 2445566689999998864432 2 334444431 0256899999999889988876442221
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccce
Q 002861 758 QRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGF 836 (873)
Q Consensus 758 ~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~ 836 (873)
..... ...+.+ ...+..+|.++|++.++++|++.+....... ...|+++++++.+++ |++|++|||||+ +
T Consensus 250 ~~~~~-v~~~~~----~~~l~~al~~~d~~~l~~~m~nD~~~e~~r~--~~~P~l~~l~~~~~~~GA~ga~mSGSGp--t 320 (370)
T PLN02451 250 PMKHH-VWNCSQ----AAALVAAILQGDAVLLGEALSSDKIVEPTRA--PLIPGMEAVKKAALEAGAYGCTISGAGP--T 320 (370)
T ss_pred chhhH-HHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhHHHHh--hhCccHHHHHHHHHHCCCeEEEEEccch--h
Confidence 11111 111222 2356789999999999999986532222222 357899999999987 999999999999 9
Q ss_pred eEEEeCCcchHHHHHHHHHhc----CCCceEEEEEeeccC
Q 002861 837 ALLLAKDAESATELRRMLEKD----SNFNSEVYNWNIYLE 872 (873)
Q Consensus 837 v~~l~~~~~~a~~i~~~L~~~----~~~~v~v~~~~i~~~ 872 (873)
+|+++++++.++++.+.+++. .+...+++..+++.+
T Consensus 321 vfal~~~~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~d~~ 360 (370)
T PLN02451 321 AVAVIDDEEKGEEVGERMVEAFRKAGNLKATASVKKLDRV 360 (370)
T ss_pred eEEEEcCHHHHHHHHHHHHHHHHHhcCCCceEEEeccCCC
Confidence 999998766778888888753 235678888877753
No 24
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=5.7e-25 Score=241.27 Aligned_cols=310 Identities=18% Similarity=0.170 Sum_probs=198.5
Q ss_pred eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCc--EEEEeCCCCc-eeeecCCC--CCC
Q 002861 528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSG--VLISDDAGNQ-LHIEDLTP--IAT 602 (873)
Q Consensus 528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~--i~i~~~~~~~-~~~~~l~~--l~~ 602 (873)
..++++||||||+|||.||. ++.|++|||+.... +.++++++.. +++.+.+... .....+.. ...
T Consensus 39 ~~~a~~PgRVnLiGEHiDy~------~~sVlpmaid~~~l----~~~~~~~d~~~sl~~tN~~~~f~~~~~~~p~~~~~I 108 (489)
T KOG0631|consen 39 VFVARAPGRVNLIGEHIDYC------GYSVLPMAIDVDTL----IAVAPSDDGIVSLRLTNFNPDFIYFKYPLPSIVWQI 108 (489)
T ss_pred eEEEecCCceecccceeeec------CceeeeEEeeeeeE----EEEEEcCCCceeEEEecCCCccceeeccCCchhccc
Confidence 48899999999999999996 88899999999986 5677887777 4444322111 01111111 111
Q ss_pred CCCCCChhHHH----HHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHh-CCC--CCHHHHH
Q 002861 603 PFDHNDPFRLV----KSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQIT-DGD--QSNENVA 675 (873)
Q Consensus 603 p~~~~~~~~~~----kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~-g~~--ls~~eL~ 675 (873)
..+...|.+|+ +++..+....+.......|+.+...+++|.|+||+||||+..++..|..++. |.+ ..+.+++
T Consensus 109 ~~~~~~w~ny~~C~~~g~h~~~~~~~~~~~~~vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~ 188 (489)
T KOG0631|consen 109 DPDVSKWENYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLA 188 (489)
T ss_pred CCCccchhhhhccchHHHHHHHhccccccCCCcceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 12445799999 4444333110111112259999999999999999999999999999988888 877 7899999
Q ss_pred HHHHHHHHHcCCCChhhhhHhhcccCeeEEecCC--CCcceeEEEeecCChhhhhhcCcEEEEEEeCCcc----------
Q 002861 676 RLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFP--GIPLRLQVIPLLASPQLILELQQRLLVVFTGQVR---------- 743 (873)
Q Consensus 676 ~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~--~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr---------- 743 (873)
++....|.+.|+++|.|||+++++|--......+ -.|. +..+++.++ ...|++.++...+
T Consensus 189 ~i~~~ae~~~G~~~gGmdq~asvl~~~~~Al~v~~~~~Pf--~~~~lk~~~------~~vfvI~~~L~~~nk~~~a~tny 260 (489)
T KOG0631|consen 189 TITVVAESYIGLNSGGMDQAASVLAEKGHALLVDPYFTPF--RRSMLKLPD------GGVFVIANSLVESNKAETAETNY 260 (489)
T ss_pred cceEEeecccCcCCCcHHHHHHHHHhcCceEEecccCCcc--ccccccCCC------CceEEEechhhhhcchhhhhhhh
Confidence 9999999999999999999999987543322222 1121 222233222 1255555442110
Q ss_pred --------hHHHHHHH-----------------------------------HHHHHhhc---------------CHHH--
Q 002861 744 --------LAHQVLQK-----------------------------------VVTRYLQR---------------DNLL-- 763 (873)
Q Consensus 744 --------~t~~~l~~-----------------------------------v~~~~~~~---------------~~~~-- 763 (873)
.+...+.+ .++..... ..++
T Consensus 261 nlRv~E~~ia~~~la~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~ 340 (489)
T KOG0631|consen 261 NLRVVEGTIAAGELAAKILVELPAYILRYQLQRAWRGDIGEGYERAEEMLGLVEESLKPEGFNIEEVARALGLDTEEFLQ 340 (489)
T ss_pred hceeEeeehhhHHHHHHhhcccHHHHHhhhhhhccccccchhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccchHHHHH
Confidence 00011110 00000000 0000
Q ss_pred ------------HHHHHHHHHH------HHHHHHHHhc------cCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHH
Q 002861 764 ------------ISSIKRLTEL------AKNGRDALMN------CDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFA 819 (873)
Q Consensus 764 ------------~~~~~~i~~~------~~~~~~AL~~------gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a 819 (873)
....++-++. +.+...++.+ |.+..+|+||+++|++...+++ +++|++++|++++
T Consensus 341 ~~~T~~~v~~~~~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~yE-cscpel~qL~kia 419 (489)
T KOG0631|consen 341 SLLTLAAVDLQVKKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYE-CSCPELDQLCKIA 419 (489)
T ss_pred HhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHHh-cCCHhHHHHHHHH
Confidence 0000111111 1111122222 3367899999999999999985 9999999999999
Q ss_pred cc-CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhc
Q 002861 820 DP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD 857 (873)
Q Consensus 820 ~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~ 857 (873)
++ |+.|+++||||||||.+.+++. +..+.+.+.+.+.
T Consensus 420 la~g~~gaRlTGaGwGGc~v~lvp~-d~~~~~~~~~~~~ 457 (489)
T KOG0631|consen 420 LANGGVGARLTGAGWGGCTVALVPA-DLVDFAVAALKEI 457 (489)
T ss_pred HhcCCccceeeccccccceeeeccc-cchHHHHHhhhhh
Confidence 97 8999999999999999999984 5677777776653
No 25
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.93 E-value=4.2e-24 Score=227.56 Aligned_cols=281 Identities=21% Similarity=0.217 Sum_probs=201.1
Q ss_pred eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861 528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN 607 (873)
Q Consensus 528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~ 607 (873)
.+++++|+...++|.++|+ +++|++++.+ +.+....+ .+++..+... ....|.+++
T Consensus 3 ~~~v~aPASSANlGpGFD~-----------lGlAl~~~~~----~~v~~~~~-~~~i~~~g~~--------~~~iP~~~~ 58 (299)
T COG0083 3 MMKVRVPASSANLGPGFDV-----------LGLALDLYND----VVVVEVVD-KFEIEVEGEG--------ADKIPLDPE 58 (299)
T ss_pred eEEEEEeecccccCCCccc-----------eeeeccccCc----EEEEEecC-cEEEEEeccc--------ccCCCCCcc
Confidence 4789999999999999998 8999999987 44444433 4455432211 112244444
Q ss_pred ChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC
Q 002861 608 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGT 687 (873)
Q Consensus 608 ~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~ 687 (873)
+ -..+++...+. ......+++|+++++||.|+|||||+|.+||.+.|+|++++.+++++++.+++..+|.
T Consensus 59 n--~~~~~~~~~~~----~~~~~~~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~Eg---- 128 (299)
T COG0083 59 N--LVYQAALKFLE----ALGIEAGVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEG---- 128 (299)
T ss_pred e--eHHHHHHHHHH----HhCCCccEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcC----
Confidence 4 24455555443 2223345999999999999999999999999999999999999999999999999996
Q ss_pred CChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCC---cchHHHHHHHHHHHHhhcCHHHH
Q 002861 688 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQ---VRLAHQVLQKVVTRYLQRDNLLI 764 (873)
Q Consensus 688 ~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~---tr~t~~~l~~v~~~~~~~~~~~~ 764 (873)
+.||++++++||+.+.....+ +...++++++ +++++++.++. |+.+|++|++.+.. .+
T Consensus 129 --HpDNVapa~lGG~~l~~~~~~----~~~~~v~~~~------~~~~v~~iP~~e~sT~~aR~vLP~~~~~-----~d-- 189 (299)
T COG0083 129 --HPDNVAPAVLGGLVLVEEESG----IISVKVPFPS------DLKLVVVIPNFEVSTAEARKVLPKSYSR-----KD-- 189 (299)
T ss_pred --CCchHHHHhhCCEEEEeecCC----ceEEEccCCc------ceEEEEEeCCccccHHHHHHhccccCCH-----HH--
Confidence 558999999999877664222 3445565554 56889998876 55566677764432 12
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH--HhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEe
Q 002861 765 SSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRL--HQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLA 841 (873)
Q Consensus 765 ~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~--~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~ 841 (873)
.+.++.. +.-++.||.++|.+.+..+|++..++ ++.+ .|.+.++.+.+.+ |++|+.+||||+ ++++++
T Consensus 190 -aV~n~s~-~a~lv~al~~~~~~l~~~~~~D~ihepyR~~L-----~P~~~~v~~~a~~~gA~g~~lSGAGP--Ti~al~ 260 (299)
T COG0083 190 -AVFNLSR-AALLVAALLEGDPELLRAMMKDVIHEPYRAKL-----VPGYAEVREAALEAGALGATLSGAGP--TVFALA 260 (299)
T ss_pred -HHHHHHH-HHHHHHHHHcCCHHHHHHHhccccchhhhhhh-----CccHHHHHHHHhhCCceEEEEecCCC--eEEEEe
Confidence 2333322 34588999999988888888887554 3444 4788889888887 999999999999 999999
Q ss_pred CCcchHHHHHHHHHhc--CCCceEEEEEeecc
Q 002861 842 KDAESATELRRMLEKD--SNFNSEVYNWNIYL 871 (873)
Q Consensus 842 ~~~~~a~~i~~~L~~~--~~~~v~v~~~~i~~ 871 (873)
++. .++.+...+++. .++...++.++++.
T Consensus 261 ~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (299)
T COG0083 261 DES-DAEKAAALLEELYEQGIKGRVHILALDS 291 (299)
T ss_pred ccc-hhhHHHHHHHHHHHhCCcceEEEEeecC
Confidence 975 444444444432 14666777776653
No 26
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.93 E-value=1.1e-23 Score=232.35 Aligned_cols=290 Identities=14% Similarity=0.138 Sum_probs=204.1
Q ss_pred eEEEEeceEEEe----eccccc-CCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCC
Q 002861 528 TVKVELPVRIDF----AGGWSD-TPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIAT 602 (873)
Q Consensus 528 ~v~v~aP~Rv~L----~G~~tD-~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~ 602 (873)
.++++||||||| +|++.| | |.+.++.++|+++.+ +++++.++..+.+..... .+
T Consensus 3 ~~~~~apakiNL~L~i~g~~~dGy------~~l~~~~~~i~l~d~----v~v~~~~~~~~~~~~~~~---------~~-- 61 (312)
T PRK02534 3 SYTLIAPAKINLHLEILGDRPDGF------HELAMVMQSIDLADR----LELRNNGDGTIRLHCDHP---------QL-- 61 (312)
T ss_pred eEEEEeceEEEeccccCccCCCCC------CceEEEEEECCCCCE----EEEEECCCCcEEEEECCC---------CC--
Confidence 377899999999 799999 5 588899999999987 777776555555543211 11
Q ss_pred CCCCCChhHHHHHHHHHhhhhhhccccc-cCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 002861 603 PFDHNDPFRLVKSALLVTGVIHEKLIES-MGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL 681 (873)
Q Consensus 603 p~~~~~~~~~~kaal~~~~~~~~~~~~~-~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~ 681 (873)
|.+ ..+++..++..+. +.+... .|++|++.++||.|+|||||||+++|++.|++++++.++++++++++|.++
T Consensus 62 ~~~---~~n~~~~~~~~~~---~~~~~~~~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~ 135 (312)
T PRK02534 62 STD---DDNLIYRAAQLLR---KRFPFAEGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAEL 135 (312)
T ss_pred CCC---chhHHHHHHHHHH---HHhCCCCCCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 211 1235555544432 122222 689999999999999999999999999999999999999999999999887
Q ss_pred HHHcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEE-EeCCcchHHHHHHHHHHHHhhc-
Q 002861 682 EQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVV-FTGQVRLAHQVLQKVVTRYLQR- 759 (873)
Q Consensus 682 E~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv-~tg~tr~t~~~l~~v~~~~~~~- 759 (873)
|. |+.++++||+.+.... +. .+.++..++ ++.++++ +++...+|+++.+.+.+.....
T Consensus 136 g~---------dv~~~~~GG~~~~~~~-g~----~~~~~~~~~------~~~~vv~~~p~~~~~T~~a~~~~~~~~~~~~ 195 (312)
T PRK02534 136 GS---------DVPFCIAGGTQLCFGR-GE----ILEPLPDLD------GLGVVLAKYPSLSVSTPWAYKTYRQQFGDTY 195 (312)
T ss_pred CC---------CCcEEeECCeEEEECC-CC----EeEECCCCC------CcEEEEEECCCCCccHHHHHHHHhhhccccc
Confidence 52 8889999999877643 32 246665443 4678887 6999899988875432211110
Q ss_pred --CHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHc-c-CCceEEecCCCccc
Q 002861 760 --DNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFAD-P-YCCGYKLVGAGGGG 835 (873)
Q Consensus 760 --~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~-~-ga~G~klsGAGgGG 835 (873)
.......+..+. ....+..+|.++|++.+++.|++..+ +...+ ..|+++++++.+. + |++|+.|||+|+
T Consensus 196 ~~~~~~~~~~~~~~-~~~~l~~al~~~d~~~~~~~~~n~l~--~~~~~--~~~~i~~~~~~l~~~~Ga~~~~lSGsGp-- 268 (312)
T PRK02534 196 LSDEEDFEQRRQAL-RSGPLLQAISAKDPPPIAQLLHNDLE--KVVLP--EYPQVAKLLELLSSLPGCLGTMMSGSGP-- 268 (312)
T ss_pred ccCccccccccccc-chhHHHHhhhccCHHHHHHhhhCchH--HHhHh--cChHHHHHHHHHHhccCCCeeEEECcCc--
Confidence 000011112221 12346789999999999887753322 22211 4688999888776 6 999999999998
Q ss_pred eeEEEeCCcchHHHHHHHHHhcC-CCceEEEEEeecc
Q 002861 836 FALLLAKDAESATELRRMLEKDS-NFNSEVYNWNIYL 871 (873)
Q Consensus 836 ~v~~l~~~~~~a~~i~~~L~~~~-~~~v~v~~~~i~~ 871 (873)
++|+++++.+.++++.+.+++.. ....+++..+++.
T Consensus 269 tv~~l~~~~~~a~~~~~~l~~~~~~~~~~v~i~~~~n 305 (312)
T PRK02534 269 TCFALFESQEQAEQALEQVREAFADPGLDAWVCQFIS 305 (312)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHhccCceEEEEEEecC
Confidence 99999998667888888887653 2345788877764
No 27
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.92 E-value=6.2e-23 Score=232.07 Aligned_cols=321 Identities=16% Similarity=0.142 Sum_probs=219.3
Q ss_pred EEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecC-C-----cEEEEeCCCCce--ee-ecCCCC-
Q 002861 531 VELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKM-S-----GVLISDDAGNQL--HI-EDLTPI- 600 (873)
Q Consensus 531 v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~-~-----~i~i~~~~~~~~--~~-~~l~~l- 600 (873)
++||||+-++||..-.-| |-..+-+|++.+.+ ++|++.+. . .|.+.+.++... .. .+.+..
T Consensus 2 ~sAPGKlliAGgYlVLep-----~y~aiVval~~r~~----a~v~~~~~~~~~~~~~i~v~SpQf~~~~~~y~~~~~~~~ 72 (454)
T TIGR01219 2 ASAPGKVLMAGGYLVLDK-----PYAGLVLGLNARFY----AIVKPINEEVGAWKWDVRVKSPQFSDREWLYKISLNHLT 72 (454)
T ss_pred cccCceEEEecceEEecC-----CCcEEEEEecceEE----EEEeecccccccCcceEEEeCCCCCCCceEEEEecCCcc
Confidence 579999999999665532 22457778888876 67765432 1 255665544311 00 000110
Q ss_pred -C---C-CCCCCChhHHHHHHHHHhh-hhhhcccc---ccCEEEEEeecc-------------------C--------CC
Q 002861 601 -A---T-PFDHNDPFRLVKSALLVTG-VIHEKLIE---SMGLQIRTWANV-------------------P--------RG 644 (873)
Q Consensus 601 -~---~-p~~~~~~~~~~kaal~~~~-~~~~~~~~---~~G~~i~i~s~I-------------------P--------~G 644 (873)
. . ....++...++.+++..+. .+...... ..+++|+|.++. + .+
T Consensus 73 ~~~~~~~~~~~~~~n~fv~~ai~~~~~y~~~~~~~~~~l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K 152 (454)
T TIGR01219 73 LQSVSASDSRNPFVNPFIQYAIAAVHLYFDKESLHKLLLQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAK 152 (454)
T ss_pred ceeecccccCCCCCChHHHHHHHHHHHHHHhccccccccCceEEEEEecCCcccccchhcccccccccccccccCCCccc
Confidence 0 0 0011234557888777643 22211112 457999997766 2 26
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCC-------------CHHHHHHHHHHHHHHc-CC-CChhhhhHhhcccCeeEEecCC
Q 002861 645 SGLGTSSILAAAVVKALLQITDGDQ-------------SNENVARLVLLLEQLM-GT-GGGWQDQIGGLYPGIKFTSSFP 709 (873)
Q Consensus 645 sGLGSSSAlavA~l~Al~~~~g~~l-------------s~~eL~~la~~~E~~~-g~-~~G~~Dq~~~~~GG~~~~~~~~ 709 (873)
.|||||||+++|+++||..+++... +++.|.++|+.+|... |. |+|. |.++++|||+.+.++.+
T Consensus 153 ~GLGSSAAvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~-DvAaavyGgi~Y~rfd~ 231 (454)
T TIGR01219 153 TGLGSSAAMTTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGF-DVSAAVYGSQRYRRFSP 231 (454)
T ss_pred cCccHHHHHHHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCch-hhhhhhcCceEEEecCh
Confidence 9999999999999999999999877 7899999999999854 64 6665 89999999987666543
Q ss_pred CC-----------------------cceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHH
Q 002861 710 GI-----------------------PLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS 766 (873)
Q Consensus 710 ~~-----------------------~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~ 766 (873)
.. +...+++++.+|+ +.+++|.+||.+++|..++.+|.+.+...++.....
T Consensus 232 ~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~lP~------~l~Llvgdtg~~ssT~~lV~~V~~~~~~~p~~s~~i 305 (454)
T TIGR01219 232 ELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFSLPP------LMNLFMGDPGGGSSTPSMVGKVKKWQMSDPEESREN 305 (454)
T ss_pred hhhhhhhccccccchhhhHHHHhccCCCCceeeccCCC------CCEEEEEcCCCCcCcHHHHHHHHHHHHHCHHHHHHH
Confidence 20 0011345666554 569999999999999999999865544444444444
Q ss_pred HHHHHHHHHHH---------------------HHHHhcc--------CHHHHHHHHHHHHHHHhhhCC----CCChHHHH
Q 002861 767 IKRLTELAKNG---------------------RDALMNC--------DVDELGKIMLEAWRLHQELDP----HCSNEFVD 813 (873)
Q Consensus 767 ~~~i~~~~~~~---------------------~~AL~~g--------d~~~lg~lm~~~~~~~~~l~~----~vs~p~l~ 813 (873)
++.|.+.-..+ ++.|..+ |+..+.+.+.++.+.++.|.. .+++|++.
T Consensus 306 ~~~l~~aN~~~~~~l~~l~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t 385 (454)
T TIGR01219 306 WQNLSDANLELETKLNDLSKLAKDHWDVYLRVIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITEEASVDIEPESQT 385 (454)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccchhhhhhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHH
Confidence 44444332222 2234445 788899999999999988875 57899999
Q ss_pred HHHHHHcc--CCceEEecCCCccceeEEEeCCcch-HHHHHHHHHhcCCCceEEEEEeec
Q 002861 814 RLFAFADP--YCCGYKLVGAGGGGFALLLAKDAES-ATELRRMLEKDSNFNSEVYNWNIY 870 (873)
Q Consensus 814 ~l~~~a~~--ga~G~klsGAGgGG~v~~l~~~~~~-a~~i~~~L~~~~~~~v~v~~~~i~ 870 (873)
+|++.+.+ |++|++.+|||||+|+++|+.++.+ .+++++.|++. .|.-..+++.
T Consensus 386 ~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~~~~~~~~~~W~~~---~V~pL~v~~~ 442 (454)
T TIGR01219 386 QLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWSSH---NVLALDVREA 442 (454)
T ss_pred HHHHHHhhcCCeeEeecCCCCccceEEEEecCChHHHHHHHHHHhhC---CEEEEecccc
Confidence 99999986 8999999999999999999987545 78888888764 4555555443
No 28
>PRK01212 homoserine kinase; Provisional
Probab=99.92 E-value=1.8e-23 Score=229.71 Aligned_cols=287 Identities=19% Similarity=0.157 Sum_probs=201.7
Q ss_pred eEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecC-C-c--EEEEeCCCCceeeecCCCCCCC
Q 002861 528 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKM-S-G--VLISDDAGNQLHIEDLTPIATP 603 (873)
Q Consensus 528 ~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~-~-~--i~i~~~~~~~~~~~~l~~l~~p 603 (873)
.+++++|+|..++|.++|+ +++||++|.+ +++++.++ . . +.+..... .++ |
T Consensus 3 ~~~v~~pat~anlg~gfd~-----------lG~al~~~d~----l~~~~~~~~~~~~~~~~~~~~~--------~~~--p 57 (301)
T PRK01212 3 MVKVRVPATSANLGPGFDS-----------LGLALSLYDE----VLVGDVVSVEAEFSIEVIGEGA--------DKL--P 57 (301)
T ss_pred eEEEEEecchhhcccChhh-----------hhccccCccE----EEEEEccCCCCceEEEEEecCC--------CcC--C
Confidence 4789999999999999998 8899999987 67766543 1 2 33322110 112 2
Q ss_pred CCCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 002861 604 FDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ 683 (873)
Q Consensus 604 ~~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~ 683 (873)
.++.+ +++..++..+. +......|++|++.++||.|+|||||||+++|++.|++++++.+++.++|+++|.++|.
T Consensus 58 ~~~~~--Nli~~a~~~~~---~~~~~~~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~ 132 (301)
T PRK01212 58 LDPEK--NLVYQAALKFL---EKLGKPPGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEG 132 (301)
T ss_pred CCCcc--ccHHHHHHHHH---HHcCCCCCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Confidence 22111 23333333331 12223468999999999999999999999999999999999999999999999999986
Q ss_pred HcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHH
Q 002861 684 LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLL 763 (873)
Q Consensus 684 ~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~ 763 (873)
+ .+|++++++||+.+.....+ ..+++++.++ ++++++++++...+|.++.+.+.+. .+ .
T Consensus 133 ~------~ddv~~~l~GG~~~~~~g~g----~~~~~~~~~~------~~~~vlv~p~~~~sT~~a~~~l~~~---~~--~ 191 (301)
T PRK01212 133 H------PDNVAPALLGGLVLALEENG----VISVKIPVFD------DLKWVVAIPNIELSTAEARAVLPKQ---YS--L 191 (301)
T ss_pred C------HHHHHHHHhCCEEEEEECCc----eEEEEecCCC------CeEEEEEECCCcCCHHHHHHhCcCc---CC--H
Confidence 2 36888999999998752222 2456665443 4579999999988888876532111 01 0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeC
Q 002861 764 ISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAK 842 (873)
Q Consensus 764 ~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~ 842 (873)
.....++.. ...+..+|.++|++.+++.|++.++..... ...|+++++++.+++ |++|++|||||+ +++++++
T Consensus 192 ~~~~~~~~~-~~~l~~al~~~d~~~~~~~~~~~~~~~~~~---~~~p~~~~i~~~~~~~Ga~g~~~SGsGp--tv~~l~~ 265 (301)
T PRK01212 192 KDAVFNSSR-AALLVAALYTGDYELAGRAMKDVLHEPYRA---KLIPGFAEVRQAALEAGALGAGISGAGP--TVFALCD 265 (301)
T ss_pred HHHHHHHHH-HHHHHHHHhhCCHHHHHHHhchhheHHhHH---hhCCCHHHHHHHHHHCCCeEEEEEchhh--heeEEec
Confidence 112222322 345788999999999999996654322111 124789999999887 899999999986 9999998
Q ss_pred CcchHHHHHHHHHhcC--CCceEEEEEeeccC
Q 002861 843 DAESATELRRMLEKDS--NFNSEVYNWNIYLE 872 (873)
Q Consensus 843 ~~~~a~~i~~~L~~~~--~~~v~v~~~~i~~~ 872 (873)
+.+. +++.+.+++.. +...+++..+++.+
T Consensus 266 ~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 296 (301)
T PRK01212 266 KEDA-EKVADALQKAFLQGIEGFVHVLRLDTA 296 (301)
T ss_pred cccH-HHHHHHHHHhhccCCCeEEEEeccCCC
Confidence 7555 78888887753 45678888877653
No 29
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.92 E-value=5.4e-23 Score=224.23 Aligned_cols=268 Identities=17% Similarity=0.071 Sum_probs=186.7
Q ss_pred EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND 608 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~ 608 (873)
..++|||||||+|+|+|+-+= =.|...++.++|+++++ +++++.++..+.+.+... ++ |.+ +
T Consensus 2 ~~~~apaKiNL~l~i~~~r~d-GyH~l~sl~~~i~l~d~----v~i~~~~~~~i~~~~~~~---------~~--~~~--~ 63 (293)
T TIGR00154 2 HVFPSPAKLNLFLYITGKRPD-GYHELQTLMQFLDLGDK----IIISVRSDDDIRLLKGDF---------DV--PLE--E 63 (293)
T ss_pred ceEeecccEEEEEecCCcCCC-CCcceEEEEEEeccCcE----EEEEECCCCcEEEeeCCC---------CC--CCC--C
Confidence 356899999999999997210 01455699999999987 677776665566643211 11 111 1
Q ss_pred hhHHHHHHHHHhhhhhhccc----cccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 002861 609 PFRLVKSALLVTGVIHEKLI----ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL 684 (873)
Q Consensus 609 ~~~~~kaal~~~~~~~~~~~----~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~ 684 (873)
+++..++..+.. ... ...|++|++.++||.|+|||||||.++|++.|++++++.++++++++++|..+|.
T Consensus 64 --nlv~~a~~~l~~---~~~~~~~~~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg~- 137 (293)
T TIGR00154 64 --NLIYRAAQLLKN---FANSKIKSLDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLGA- 137 (293)
T ss_pred --cHHHHHHHHHHH---HhcccccCCCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-
Confidence 466666655421 121 2468999999999999999999999999999999999999999999999988852
Q ss_pred cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHH
Q 002861 685 MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLI 764 (873)
Q Consensus 685 ~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~ 764 (873)
|..++++||..+...... .+.+++.++ +..+++++++...+|+++++.+. .......
T Consensus 138 --------Dv~~~~~gg~~~~~g~ge-----~~~~l~~~~------~~~~vl~~p~~~~sT~~~~~~l~--~~~~~~~-- 194 (293)
T TIGR00154 138 --------DVPFFVSGHAAFATGVGE-----IITPFEDPP------EKWVVIAKPHVSISTPVVYQAYK--LPRNTPK-- 194 (293)
T ss_pred --------CcceEEECCeEEEEecCc-----EEEECCCCC------CcEEEEEcCCCCcChHHHHHhhh--hcccCcc--
Confidence 888999999998875432 245554332 45789999999999999987542 1111000
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCC
Q 002861 765 SSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKD 843 (873)
Q Consensus 765 ~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~ 843 (873)
....+..++..++++.+...+.+..+.... -..|+++++++.+++ |+++++|||||+ |+|+++++
T Consensus 195 --------~~~~l~~~~~~~~~~~~~~~~~ndle~~~~----~~~p~l~~i~~~l~~~Ga~~a~mSGSG~--tvf~l~~~ 260 (293)
T TIGR00154 195 --------RAKEWLKKISLECLQLLDSNGLNDLEKVAL----KRHTEVAQALNWLLEYGLAPERLSGSGA--CVFALFDM 260 (293)
T ss_pred --------hhHHHHHHHhhccHHHHhhhhcCccHHHHH----hcCHHHHHHHHHHHhCCCCeEEEecccc--ceEEEeCC
Confidence 011234445455555443332222221111 246999999999987 899999999976 99999998
Q ss_pred cchHHHHHHHHHhc
Q 002861 844 AESATELRRMLEKD 857 (873)
Q Consensus 844 ~~~a~~i~~~L~~~ 857 (873)
.+.++++.+.+++.
T Consensus 261 ~~~a~~~~~~~~~~ 274 (293)
T TIGR00154 261 ESEAEQVLEQAPEW 274 (293)
T ss_pred HHHHHHHHHHhHHH
Confidence 66678888777643
No 30
>PTZ00299 homoserine kinase; Provisional
Probab=99.91 E-value=4e-23 Score=227.24 Aligned_cols=286 Identities=16% Similarity=0.158 Sum_probs=197.2
Q ss_pred CCeEEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCC
Q 002861 526 PRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFD 605 (873)
Q Consensus 526 ~~~v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~ 605 (873)
+..+++++|+...++|.++|. +++|+++|.+ +++++.+...+.+..... ..+ |.+
T Consensus 5 ~~~~~v~vPATsANlGpGFDs-----------LGlAL~lyd~----v~v~~~~~~~i~i~G~~~--------~~l--p~~ 59 (336)
T PTZ00299 5 PKKVVLRVPATTANIGPAYDT-----------LGMALSIFME----LTVEHADAFSMTVEGEGS--------EHI--STD 59 (336)
T ss_pred CceEEEEEecccccccccHHH-----------HhhhcccCcE----EEEEECCCCEEEEecCCc--------CCC--CCC
Confidence 446999999999999999998 8999999987 778775443344432111 011 222
Q ss_pred CCChhHHHHHHHHHhhhhhhccc--cccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHH
Q 002861 606 HNDPFRLVKSALLVTGVIHEKLI--ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQS---NENVARLVLL 680 (873)
Q Consensus 606 ~~~~~~~~kaal~~~~~~~~~~~--~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls---~~eL~~la~~ 680 (873)
+.+ .+++++...+. ... ...|++|+++++||.++|||||||.++|++.++++++|.+++ .++|+++|..
T Consensus 60 ~~n--lv~~a~~~~~~----~~~~~~~~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~ 133 (336)
T PTZ00299 60 EDN--MVVQACRLAFE----EYAHKSMPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAK 133 (336)
T ss_pred cch--HHHHHHHHHHH----HhcCCCCCceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHh
Confidence 111 13344433322 111 125899999999999999999999999999999999999995 7999999999
Q ss_pred HHHHcCCCChhhhhHhhcccCeeEEecCC-CCcceeEEEeecCChhhhhhcCcEEEEEEeCC-----cchHHHHHHHHHH
Q 002861 681 LEQLMGTGGGWQDQIGGLYPGIKFTSSFP-GIPLRLQVIPLLASPQLILELQQRLLVVFTGQ-----VRLAHQVLQKVVT 754 (873)
Q Consensus 681 ~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~-~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~-----tr~t~~~l~~v~~ 754 (873)
+|. +.||++++++||+.+....+ + +....+++.++ ++.++++.++. |..+++++++.+.
T Consensus 134 ~EG------HpDNVapal~GG~~~~~~~~~g---e~~~~~i~~~~------~~~~vv~iP~~~~~~sT~~aR~vLP~~v~ 198 (336)
T PTZ00299 134 FEG------HPDNAAPAIYGGIQLVYKKDNG---RFLTYRVPTPP------NLSVVLFVPHNKMKANTHVTRNLIPTSVS 198 (336)
T ss_pred hcC------CcccHHHHHhCCEEEEEecCCC---ceEEEecCCCC------CeEEEEEECCCCccccHHHHHhhCcccCc
Confidence 985 34779999999998876433 3 22344565543 45788888864 3334444443322
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH-HHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCC
Q 002861 755 RYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLE-AWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAG 832 (873)
Q Consensus 755 ~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~-~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAG 832 (873)
. .+...++... ..+..+|.++|++.+.. +.+ .|+..+.. -..|.++++.+.+.+ |++|+.|||||
T Consensus 199 ~--------~dav~n~~~~-~~lv~al~~~d~~ll~~-~~D~lhep~R~~---~liP~~~~v~~~~~~~Ga~g~~lSGSG 265 (336)
T PTZ00299 199 L--------EDAVFNISRT-SILVLALSTGDLRMLKS-CSDKLHEQQRSD---ALFPHFRPCVKAAREAGAHYAFLSGAG 265 (336)
T ss_pred H--------HHHHHhhhHH-HHHHHHHHhCCHHHHHh-chhcccCccccc---ccCccHHHHHHHHHHCCCeEEEEEchh
Confidence 1 1222333222 24788999999999865 443 34322211 135899999999976 99999999999
Q ss_pred ccceeEEEeCC-----------cchHHHHHHHHHhc---CCCceEEEEEeeccC
Q 002861 833 GGGFALLLAKD-----------AESATELRRMLEKD---SNFNSEVYNWNIYLE 872 (873)
Q Consensus 833 gGG~v~~l~~~-----------~~~a~~i~~~L~~~---~~~~v~v~~~~i~~~ 872 (873)
+ ++++|+++ ++.++++.+++++. .+...+++..+++.+
T Consensus 266 P--Tv~al~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (336)
T PTZ00299 266 P--SVCALVGGRHGDPLTQPREERKAESVAEAMIKAAEAVGVAGRVIITQPSDQ 317 (336)
T ss_pred h--hheEEeccccccccccccchhHHHHHHHHHHHHHHHcCCceEEEEccCCCC
Confidence 9 99999982 34567888888773 346778888888753
No 31
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.91 E-value=7.2e-23 Score=224.78 Aligned_cols=286 Identities=17% Similarity=0.146 Sum_probs=189.9
Q ss_pred EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEE----ecCC-cEEEEeCCCCceeeecCCCCCCC
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIET----TKMS-GVLISDDAGNQLHIEDLTPIATP 603 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~----~~~~-~i~i~~~~~~~~~~~~l~~l~~p 603 (873)
+++++|+...++|.++|+ +++|+++|.+ ++++. .+.. .+.+..... ..+ |
T Consensus 1 ~~v~vpatsaNlg~GfD~-----------lg~al~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--------~~~--p 55 (302)
T TIGR00191 1 FRVKVPASSANLGPGFDV-----------LGAALSLYLG----LTVTDVVAQESDDTEIEAEGEGV--------EKI--P 55 (302)
T ss_pred CEEEEecchhccccChhh-----------hhhhccccce----EEEEeeecccCCCceEEEEeccc--------ccC--C
Confidence 367999999999999998 8999999987 55553 2221 233332110 112 2
Q ss_pred CCCCChhHHHHHHHHHhhhhhhccccc-cCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 002861 604 FDHNDPFRLVKSALLVTGVIHEKLIES-MGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE 682 (873)
Q Consensus 604 ~~~~~~~~~~kaal~~~~~~~~~~~~~-~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E 682 (873)
.++. .|++..++..+. +..... .|++|++.++||.|+|||||||+++|++.|++++++.+++.++|+++|.++|
T Consensus 56 ~~~~--~Nlv~~a~~~~~---~~~g~~~~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E 130 (302)
T TIGR00191 56 TEPT--DNLIYQVAKRFL---DQLGIRMPPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELE 130 (302)
T ss_pred CCcc--cccHHHHHHHHH---HHcCCCCCCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhc
Confidence 2211 224444443331 112223 6899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHH
Q 002861 683 QLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNL 762 (873)
Q Consensus 683 ~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~ 762 (873)
.+ .||++++++||+.+....++. +...+++.++ ++++++++|+...+|++..+.+.+.+ ..
T Consensus 131 ~h------~Dnv~~~l~GG~~~~~~~~~~---~~~~~~~~~~------~~~~vl~~p~~~~sT~~a~~~lp~~~-~~--- 191 (302)
T TIGR00191 131 GH------PDNVAPALLGGFQLAFVEDDK---LEVLKIPIFS------KLDWVLAIPNIEVSTAEARAVLPKAY-PR--- 191 (302)
T ss_pred CC------cccHHHHhccCEEEEEEcCCc---eEEEEeCCCC------CEEEEEEECCCcccHHHHHHhCcccC-CH---
Confidence 62 466889999999887644331 2222332222 46899999999888887754321111 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH--HHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEE
Q 002861 763 LISSIKRLTELAKNGRDALMNCDVDELGKIMLEA--WRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALL 839 (873)
Q Consensus 763 ~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~--~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~ 839 (873)
.+...++...+ .+..+|.+++.+ +++.+.+. |+..+. ...|+++++++.+++ |++|+++||||+ ++++
T Consensus 192 -~~~v~~~~~~~-~l~~al~~~~~~-l~~~~~~d~l~e~~~~----~l~p~l~~i~~~~~~~Ga~g~~lSGsGp--tv~a 262 (302)
T TIGR00191 192 -QDLVFNLSHLA-GLVHAIYQKKPD-LGAIMMKDRIHQPYRE----SLIPNLFKIKQAALEKGAYGITISGSGP--TILA 262 (302)
T ss_pred -HHHHHHHHHHH-HHHHHHHcCCHH-HHHHHcccccchhhHh----hhCCCHHHHHHHHHHCCCeEEEEEchhh--hheE
Confidence 11222232222 356788888765 45554443 222221 236889999998876 999999999996 8999
Q ss_pred EeCCcchHHHHHHHHHhc--CCCceEEEEEeeccC
Q 002861 840 LAKDAESATELRRMLEKD--SNFNSEVYNWNIYLE 872 (873)
Q Consensus 840 l~~~~~~a~~i~~~L~~~--~~~~v~v~~~~i~~~ 872 (873)
|+++.+.++.+.+.+++. .+...+++..+++.+
T Consensus 263 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (302)
T TIGR00191 263 MADEEFAEQKEQDLLEVLHKQGIEGTVHVLDFDND 297 (302)
T ss_pred EecchhhHHHHHHHHHHHHhcCCCeEEEEcccCCC
Confidence 998765665555555542 234678888887754
No 32
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.89 E-value=8.8e-22 Score=216.11 Aligned_cols=272 Identities=18% Similarity=0.174 Sum_probs=188.3
Q ss_pred EEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861 530 KVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN 607 (873)
Q Consensus 530 ~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~ 607 (873)
+++||+||||+ .+..+...+ |.-..+.+||++|.+ +++++.+...+.+..... ..+ |.+.
T Consensus 2 ~~~a~aKiNl~---L~i~~kr~dgyH~l~s~~~ai~l~d~----v~i~~~~~~~i~~~~~~~--------~~~--~~~~- 63 (300)
T PRK03188 2 TVRAPAKVNLH---LGVGPLRDDGYHELATVFQAVSLYDE----VTVTAADVLSVEVSGEGA--------DQV--PTDE- 63 (300)
T ss_pred eEeecceEEEe---eccCCcCCCCccchHhhheehhhccE----EEEEECCCcEEEEecCCc--------cCC--CCCC-
Confidence 56899999998 555443322 556789999999998 677765332233321110 011 2111
Q ss_pred ChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC
Q 002861 608 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGT 687 (873)
Q Consensus 608 ~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~ 687 (873)
-+++..++..+. +......|++|++.|+||.++|||||||+++|++.|+++++|.++++++|+++|.++|
T Consensus 64 --~nl~~~~~~~~~---~~~~~~~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig----- 133 (300)
T PRK03188 64 --SNLAWRAAELLA---EHVGRAPDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELG----- 133 (300)
T ss_pred --ccHHHHHHHHHH---HHhCCCCCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC-----
Confidence 224444443331 1122346899999999999999999999999999999999999999999999998875
Q ss_pred CChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHH
Q 002861 688 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSI 767 (873)
Q Consensus 688 ~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~ 767 (873)
.|+.++++||+.+.... +. .+.++..++ +..++++.++...+|+++++.+.. ....+. .
T Consensus 134 ----~dv~~~~~GG~~~~~~~-g~----~~~~~~~~~------~~~~~lv~p~~~~sT~~~~~~l~~-~~~~~~-----~ 192 (300)
T PRK03188 134 ----SDVPFALLGGTALGTGR-GE----QLAPVLARG------TFHWVLAFADGGLSTPAVFRELDR-LREAGD-----P 192 (300)
T ss_pred ----CCcchhhcCCeEEEEec-CC----EEEECCCCC------CcEEEEEeCCCCCCHHHHHHhchh-hhcccc-----c
Confidence 28888999999887643 32 345554332 335666667777788887665422 111100 0
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcch
Q 002861 768 KRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAES 846 (873)
Q Consensus 768 ~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~ 846 (873)
.. ...+..+..++.++|++.++++|++..+. ..+ -..|+++++++.+++ |++|++|||+|+ ++++++++.+.
T Consensus 193 ~~-~~~~~~~~~al~~~d~~~l~~~~~n~le~-~~~---~~~p~l~~l~~~~~~~Galga~lSGsG~--tv~~l~~~~~~ 265 (300)
T PRK03188 193 PR-LGEPDPLLAALRAGDPAQLAPLLGNDLQA-AAL---SLRPSLRRTLRAGEEAGALAGIVSGSGP--TCAFLCADADS 265 (300)
T ss_pred cc-cccHHHHHHHHHcCCHHHHHHHhhCcCHH-HHH---HhCchHHHHHHHHHHCCCCEEEEEcccc--ceEEEeCCHHH
Confidence 01 12345688999999999999998754322 222 137899999999987 999999999999 68899987677
Q ss_pred HHHHHHHHHhc
Q 002861 847 ATELRRMLEKD 857 (873)
Q Consensus 847 a~~i~~~L~~~ 857 (873)
++++.+.|++.
T Consensus 266 ~~~~~~~l~~~ 276 (300)
T PRK03188 266 AVDVAAALSGA 276 (300)
T ss_pred HHHHHHHHHhc
Confidence 88999999875
No 33
>PRK01123 shikimate kinase; Provisional
Probab=99.88 E-value=1.1e-20 Score=205.22 Aligned_cols=272 Identities=18% Similarity=0.185 Sum_probs=183.6
Q ss_pred eEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCChhHHHH
Q 002861 535 VRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVK 614 (873)
Q Consensus 535 ~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~~~~~~k 614 (873)
+|..-.|+.||+|.|+-.|||.+ +|++|.+ +++++.++. +.+..+ ...+ +.. ..+++.
T Consensus 3 ~~~~~~gg~~~~~~~~~~~g~~~---~i~l~~~----v~v~~~~~~-~~~~~~---------~~~~--~~~---~~~~v~ 60 (282)
T PRK01123 3 GRATALGAGTIINAIATGKGSAF---GIDLKTT----ATVELSDDG-GGIEGE---------ISGN--PDA---DTRLIE 60 (282)
T ss_pred ceEEecchhhhhhhhhcCcccEE---EeccEEE----EEEEECCCC-ceeeec---------ccCC--CCC---CchHHH
Confidence 67788899999999998898775 8999987 777765442 222211 0111 111 124555
Q ss_pred HHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC--CCChhh
Q 002861 615 SALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMG--TGGGWQ 692 (873)
Q Consensus 615 aal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g--~~~G~~ 692 (873)
.++..+. +......|++|++.++||.++|||||||+++|++.|++++++.++++++|+++|..+|...+ ..+|.|
T Consensus 61 ~~~~~~~---~~~~~~~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~ 137 (282)
T PRK01123 61 RCVELVL---ERFGIDYGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFD 137 (282)
T ss_pred HHHHHHH---HHhCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchh
Confidence 5554432 11222358999999999999999999999999999999999999999999999999998543 368889
Q ss_pred hhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 002861 693 DQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTE 772 (873)
Q Consensus 693 Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~ 772 (873)
|+++++|||+.+...... ..+.+++. ++.++++.|+.+..|.+.-+.. +..+..
T Consensus 138 d~~~~~~GG~~~~~~~~~----~~~~~~~~--------~~~~vv~~p~~~~~T~~~r~~~--------------l~~~~~ 191 (282)
T PRK01123 138 DACASYFGGVTVTDNREM----KLLKRDEV--------ELDVLVLIPPEGAFSASADVER--------------MKLIAP 191 (282)
T ss_pred HHHHHHhCCEEEEcCCCc----eEEEEecC--------CcEEEEEECCCCcchhhhhhhh--------------chhcCc
Confidence 999999999987653221 11223321 3578999999887776532221 111222
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHH-hhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCCcchHHHHH
Q 002861 773 LAKNGRDALMNCDVDELGKIMLEAWRLH-QELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAESATELR 851 (873)
Q Consensus 773 ~~~~~~~AL~~gd~~~lg~lm~~~~~~~-~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~~a~~i~ 851 (873)
..+.+..+++++|+. ++|+.++... +.+. .+. +.+.+....|++|+++||+|+ |+++|++. +.++++.
T Consensus 192 ~~d~~~~~~~~~~l~---~~~~~~~l~~~~~l~--~~~---~~i~~a~~~Ga~ga~lSGaGp--tv~al~~~-~~~~~v~ 260 (282)
T PRK01123 192 YVDMAFELALDGEYF---KAMTLNGLLYSSALG--FPT---EPALEALEAGAVGVGLSGTGP--SYVAIVDE-EDPEEVK 260 (282)
T ss_pred HHHHHHHHHhhccHH---HHHHhCCchhhhhhC--CCh---HHHHHHHHCCCeEEEEecCCC--eEEEEeCC-CCHHHHH
Confidence 233455556677764 5555542221 2343 232 223333334899999999865 99999985 5688899
Q ss_pred HHHHhcCCCceEEEEEeeccC
Q 002861 852 RMLEKDSNFNSEVYNWNIYLE 872 (873)
Q Consensus 852 ~~L~~~~~~~v~v~~~~i~~~ 872 (873)
+.|++. .+++..+++.+
T Consensus 261 ~~l~~~----~~~~~~~~~~~ 277 (282)
T PRK01123 261 EAWEKY----GKVIVTKINNE 277 (282)
T ss_pred HHHHhC----CEEEEeeecCC
Confidence 999884 56777777643
No 34
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.88 E-value=1.7e-20 Score=203.55 Aligned_cols=263 Identities=14% Similarity=0.132 Sum_probs=179.6
Q ss_pred EEEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDH 606 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~ 606 (873)
+.++||++|||+ .|..+...+ |.-..+...|+++.+ +++++.+...+.+.... ..+ |.++
T Consensus 4 ~~~~apaKiNl~---L~i~~~r~dgyH~l~s~~~~i~l~d~----v~v~~~~~~~~~i~~~~---------~~~--p~~~ 65 (280)
T PRK14614 4 LTLKAPAKVNYR---LDVLRRRPDGYHDLRMIMQRVDLCDE----IEIALSDGPGIRVTCGR---------EGV--PDGP 65 (280)
T ss_pred eEEeecceEEee---eccCCCCCCCcChhheEeEECCCCeE----EEEEECCCCCEEEEeCC---------CCC--CCCC
Confidence 667999999998 666554433 555688899999997 77776543334443210 111 2221
Q ss_pred CChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC
Q 002861 607 NDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMG 686 (873)
Q Consensus 607 ~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g 686 (873)
.+++..++..+- +......|++|++.++||.++|||||||.++|++.+++++++.+++++++.+++..+|.
T Consensus 66 ---~nl~~~a~~~~~---~~~~~~~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G~--- 136 (280)
T PRK14614 66 ---GNIAWRAADALL---DLSGREVGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLGA--- 136 (280)
T ss_pred ---CcHHHHHHHHHH---HHhCCCCceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC---
Confidence 224433333321 11222458999999999999999999999999999999999999999999999876532
Q ss_pred CCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHH
Q 002861 687 TGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS 766 (873)
Q Consensus 687 ~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~ 766 (873)
|.+++++||..+....+. .++++..++ +..+++++|+...+|+++++.+..............
T Consensus 137 ------Dv~~~l~gg~~~~~g~ge-----~~~~l~~~~------~~~ivl~~p~~~~sT~~~~~~~~~~~~~~~~~~~~~ 199 (280)
T PRK14614 137 ------DVPFFIFKKTALAEGIGD-----KLTAVEGVP------PLWVVLVNPGLHVSTAWVYQNLRLTSRKDLAIIPRF 199 (280)
T ss_pred ------CcceeeeCCcEEEEEcCc-----eeEECCCCC------CcEEEEECCCCCCCHHHHHhcccccccCcchhhhhh
Confidence 888889999988664332 245554332 457999999999999999876532110011111111
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcc
Q 002861 767 IKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE 845 (873)
Q Consensus 767 ~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~ 845 (873)
+..+. ...++..+|++.+. + -..|+++++++.+++ |++|++|||||+ |+++++++.+
T Consensus 200 ~~~~~-----~~~~~~~ndle~~~------------~---~~~p~l~~i~~~~~~~Galga~lSGSG~--tv~~l~~~~~ 257 (280)
T PRK14614 200 FGSVA-----EVCALLSNDLESVT------------I---GRFPVIGEIKEELLAAGARGSLMSGSGS--TVFGLFDDEA 257 (280)
T ss_pred hhhHH-----HHhhhcccCcHHHH------------H---hcChHHHHHHHHHHhCCCCEEEEecccc--ceEEEeCCHH
Confidence 11111 12345567766542 1 125899999999987 899999999985 9999999866
Q ss_pred hHHHHHHHHHhc
Q 002861 846 SATELRRMLEKD 857 (873)
Q Consensus 846 ~a~~i~~~L~~~ 857 (873)
.++++.+.+++.
T Consensus 258 ~~~~~~~~l~~~ 269 (280)
T PRK14614 258 AARAAAEELSRE 269 (280)
T ss_pred HHHHHHHHhhhc
Confidence 688899998885
No 35
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.87 E-value=3.2e-20 Score=202.70 Aligned_cols=278 Identities=13% Similarity=0.048 Sum_probs=182.5
Q ss_pred CCeEEEEeceEEEeecccccCCCcccC--CCCeEEEeeee-cccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCC
Q 002861 526 PRTVKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAIS-LESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIAT 602 (873)
Q Consensus 526 ~~~v~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~-l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~ 602 (873)
.+.++++||+||||. .|..+..-+ |.-.++.++|+ ++++ +++++.+...+.+..... .+
T Consensus 4 ~~~~~~~apaKINL~---L~v~~kr~DGyH~l~sl~~~i~~~~D~----l~i~~~~~~~i~~~~~~~---------~~-- 65 (296)
T PRK14615 4 NDAVTLRSGCKVNLD---LRITGVRPDGYHEIDSLFLPLPEPHDE----LHVRVTDAPGITVTCTIP---------DL-- 65 (296)
T ss_pred CCeEEEEecceEEec---cccCCcCCCCCcceEEEEEECCCCCcE----EEEEECCCCCEEEEECCC---------CC--
Confidence 456889999999998 444433222 56689999998 5776 778776554565543211 11
Q ss_pred CCCCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 002861 603 PFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE 682 (873)
Q Consensus 603 p~~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E 682 (873)
+. . -|++..++..+. +......|++|++.++||.++||||||+.++|++.+++++++.+++.+++++++..+|
T Consensus 66 ~~-~---~Nlv~~a~~~~~---~~~~~~~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~g 138 (296)
T PRK14615 66 DP-E---RNTVTRAYTAFA---AATGFRPPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVG 138 (296)
T ss_pred CC-C---ccHHHHHHHHHH---HHhCCCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC
Confidence 11 1 123333333321 1122236899999999999999999999999999999999999999999999998876
Q ss_pred HHcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHH
Q 002861 683 QLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNL 762 (873)
Q Consensus 683 ~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~ 762 (873)
. |+.++++||..+...... .++|++++. .+..++|++|+..-+|+++++.+..........
T Consensus 139 a---------DvPffl~gg~a~~~G~Ge-----~~~~l~~~~-----~~~~~vl~~P~~~vsT~~a~~~~~~~~~~~~~~ 199 (296)
T PRK14615 139 A---------DVPFFLHNVPCRATGIGE-----ILTPVALGL-----SGWTLVLVCPEVQVSTPWAYAAWDAANAKQIAA 199 (296)
T ss_pred C---------CCeeeccCCCEEEEeeEe-----EEEECCCCC-----CCcEEEEECCCCCcChHHHHHHhhhhccccccc
Confidence 4 777777898887654322 456765321 145789999999999999876532211100000
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCHHHHHHH--HHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEE
Q 002861 763 LISSIKRLTELAKNGRDALMNCDVDELGKI--MLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALL 839 (873)
Q Consensus 763 ~~~~~~~i~~~~~~~~~AL~~gd~~~lg~l--m~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~ 839 (873)
. ...... ...+......+|...+++. +.+..+..+ + -..|+++++++.+.+ |++|++|||||+ |+|+
T Consensus 200 ~---~~~~~~-~~~~l~~~~~~~~~~~~~~~~l~ndle~~~-~---~l~P~l~~~~~~~~~~GAlga~mSGSGp--tvfa 269 (296)
T PRK14615 200 S---SRKQNR-LRGCLTTEGVADRNPLSRGLWLHNSFEPVV-F---AAHPELRRLKETLLRHGAAAALMSGSGS--SVFG 269 (296)
T ss_pred c---cccccc-hHHHHHhhhccchhhhhhhhhccccchhHh-H---HhChHHHHHHHHHHhcCCCEEEEeccCc--ceEE
Confidence 0 000000 0112233333444333222 222222111 1 146899999999977 999999999997 9999
Q ss_pred EeCCcchHHHHHHHHHhc
Q 002861 840 LAKDAESATELRRMLEKD 857 (873)
Q Consensus 840 l~~~~~~a~~i~~~L~~~ 857 (873)
|+++.+.++++.+.+++.
T Consensus 270 L~~~~~~a~~i~~~l~~~ 287 (296)
T PRK14615 270 LFRRRAQAEAAFEMLKGH 287 (296)
T ss_pred EeCCHHHHHHHHHHHhhh
Confidence 999878889999999885
No 36
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.86 E-value=1.2e-19 Score=197.84 Aligned_cols=265 Identities=15% Similarity=0.087 Sum_probs=177.3
Q ss_pred eEEEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCC
Q 002861 528 TVKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFD 605 (873)
Q Consensus 528 ~v~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~ 605 (873)
.+.++||+||||. .+..+..-+ |.-..+...|+++++ +++++.++..+.+..... ..+ |.+
T Consensus 6 ~~~~~a~aKiNL~---L~i~~kr~dGyH~l~s~~~~i~l~D~----l~i~~~~~~~i~~~~~~~--------~~i--p~~ 68 (290)
T PRK14608 6 SLTEFAPAKINLA---LHVTGRRADGYHLLESLVAFADVGDR----LTLEPAEALSLTVSGPFA--------AGL--GDG 68 (290)
T ss_pred eEEEEeceeEEee---eccCCCCCCCCcceeEEEEECCCCcE----EEEEECCCCcEEEeCCCc--------cCC--CCC
Confidence 4678999999998 343332211 566789999999997 677765444455543211 011 222
Q ss_pred CCChhHHHHHHHHHhhhhhhccc-cccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 002861 606 HNDPFRLVKSALLVTGVIHEKLI-ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL 684 (873)
Q Consensus 606 ~~~~~~~~kaal~~~~~~~~~~~-~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~ 684 (873)
.-|++..|+..+. +... ...|++|++.++||.|+|||||||.++|++.+++++++.++++++++++|..+|.
T Consensus 69 ---~~Nlv~ka~~~~~---~~~g~~~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig~- 141 (290)
T PRK14608 69 ---DDNLVLRAARALR---ARVGPGLPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLGA- 141 (290)
T ss_pred ---CCcHHHHHHHHHH---HHhCCCCCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-
Confidence 2235544444432 1221 3468999999999999999999999999999999999999999999999998742
Q ss_pred cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCH-HH
Q 002861 685 MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDN-LL 763 (873)
Q Consensus 685 ~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~-~~ 763 (873)
|+.++++||..+.... |. .+++++..+ +..++|++++...+|.++.+.+ +.....+. ..
T Consensus 142 --------dv~~~l~gg~~~~~g~-g~----~~~~l~~~~------~~~~vv~~p~~~~sT~~~~~~l-~~~~~~~~~~~ 201 (290)
T PRK14608 142 --------DVPVCLDSRPLIMRGI-GE----ELTPLPGLP------SLPAVLVNPGVPVATPDVFRAL-GLRDGPPLPGA 201 (290)
T ss_pred --------CcchhhcCCeEEEEec-CC----EeEECCCCC------CcEEEEECCCCCcChHHHHHhh-ccccCCcchhh
Confidence 8999999999887653 32 345654322 4579999999999999888653 21110010 00
Q ss_pred HHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc--CCceEEecCCCccceeEE
Q 002861 764 ISSIKRLTELAKNGRDALM--NCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP--YCCGYKLVGAGGGGFALL 839 (873)
Q Consensus 764 ~~~~~~i~~~~~~~~~AL~--~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~ 839 (873)
...+.+. ..+..++. .+|++... .. ..|+++++.+.+.+ |++|++|||||+ ++++
T Consensus 202 ~~~~~~~----~~l~~~~~~~~ndle~~~----------~~-----l~p~l~~i~~~~~~~~Ga~~~~lSGSGs--tvf~ 260 (290)
T PRK14608 202 PDPLASA----DALLAALAATRNDLEPPA----------LA-----LAPVIGEVLAALRAQPGALLARMSGSGA--TCFA 260 (290)
T ss_pred hhhhhhh----hhHHHHHHhccCccHHHH----------HH-----cCcHHHHHHHHHHhcCCCCeeEEecccc--CeEE
Confidence 1111111 11222222 22332111 12 35899999998864 899999999998 9999
Q ss_pred EeCCcchHHHHHHHHHhc
Q 002861 840 LAKDAESATELRRMLEKD 857 (873)
Q Consensus 840 l~~~~~~a~~i~~~L~~~ 857 (873)
++++.+.++++.+.+++.
T Consensus 261 l~~~~~~a~~~~~~l~~~ 278 (290)
T PRK14608 261 LFADEAAAEAAAAAIAAA 278 (290)
T ss_pred EeCCHHHHHHHHHHhHhh
Confidence 999867788999999864
No 37
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.86 E-value=6.4e-20 Score=199.97 Aligned_cols=266 Identities=17% Similarity=0.124 Sum_probs=179.7
Q ss_pred eEEEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCC
Q 002861 528 TVKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFD 605 (873)
Q Consensus 528 ~v~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~ 605 (873)
++.++||+||||. .+..+..-+ |.-..+.++|+++.+ +++++.+ .+.+.... .++ |.+
T Consensus 3 ~~~~~a~aKiNL~---L~i~~~r~dgyH~l~si~~~i~l~d~----v~v~~~~--~~~i~~~~---------~~~--p~~ 62 (287)
T PRK14616 3 HISVKAFAKINLG---LLITGKRPDGYHTLETIFAPINWYDT----LTFSPSD--TISMSCTN---------LDL--PVD 62 (287)
T ss_pred ceEEeeceeEEee---eecCCCCCCCccceeEEEEEcCCCCE----EEEEECC--CEEEEeCC---------CCC--CCC
Confidence 4778999999998 444322211 455788899999987 6776643 24443211 011 221
Q ss_pred CCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc
Q 002861 606 HNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM 685 (873)
Q Consensus 606 ~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~ 685 (873)
..+++..++..+. +......|++|++.++||.++|||||||.++|++.++++++|.+++.++++++|..+|.
T Consensus 63 ---~~nl~~~a~~~~~---~~~~~~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig~-- 134 (287)
T PRK14616 63 ---DSNLCIRAAKALQ---EYAGVSKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLGA-- 134 (287)
T ss_pred ---ccHHHHHHHHHHH---HHhCCCCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC--
Confidence 1234433333321 11223468999999999999999999999999999999999999999999999999864
Q ss_pred CCCChhhhhHhhc-ccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHH
Q 002861 686 GTGGGWQDQIGGL-YPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLI 764 (873)
Q Consensus 686 g~~~G~~Dq~~~~-~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~ 764 (873)
|..+++ +||+.+.... |. .++++..+. ..++++++|+...+|+++.+.+.+....+
T Consensus 135 -------Dvp~~l~~gg~~~~~g~-g~----~~~~~~~~~------~~~~vvv~P~~~vsT~~a~~~l~~~~~~~----- 191 (287)
T PRK14616 135 -------DVPYFLEMKGLAYATGI-GD----ELEDLQLTL------PFHIVTVFPEEHISTVWAYKNFYRRFERE----- 191 (287)
T ss_pred -------CcceEeccCCcEEEEEc-Cc----eeEECCcCC------CcEEEEECCCCCcCHHHHHHHhhhhcccC-----
Confidence 554444 5888766543 32 244544322 35789999999999998876542222111
Q ss_pred HHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeC
Q 002861 765 SSIKRLTELAKNGRDALM-NCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAK 842 (873)
Q Consensus 765 ~~~~~i~~~~~~~~~AL~-~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~ 842 (873)
..++ ..+..++. .++++.++.+.++-......+ .|+++++.+.+++ |++|+.|||||+ ++++|++
T Consensus 192 --~~~~----~~l~~~l~~~~~~~l~~~~~nD~e~~~~~l-----~p~l~~v~~~~~~~Galg~~lSGSGp--tv~al~~ 258 (287)
T PRK14616 192 --RPDL----KTLVRRLCLDGDTSVLPAFENDFESAVFDH-----YPAVRKVKDDLLEAGSFFASLSGSGS--AVFGLFE 258 (287)
T ss_pred --CchH----HHHHHHHhcCCHHHHHHHhcCccHHHHHHh-----ChHHHHHHHHHHhCCCCeEEEecccc--cceEEeC
Confidence 1111 12344333 456666666555443333333 4899999998887 999999999999 9999998
Q ss_pred CcchHHHHHHHHHhc
Q 002861 843 DAESATELRRMLEKD 857 (873)
Q Consensus 843 ~~~~a~~i~~~L~~~ 857 (873)
+.+.++++.+.+++.
T Consensus 259 ~~~~a~~i~~~l~~~ 273 (287)
T PRK14616 259 NEADAEAAAEMMRAR 273 (287)
T ss_pred CHHHHHHHHHHhHHh
Confidence 767788999999875
No 38
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.86 E-value=1.9e-19 Score=193.14 Aligned_cols=234 Identities=20% Similarity=0.154 Sum_probs=162.3
Q ss_pred EEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCChhHHHHHHHHHhhhhhhccccccCEEEEE
Q 002861 558 LNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRT 637 (873)
Q Consensus 558 l~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i 637 (873)
..++|+++.+ +++++.++..+.+.+. . . .+++..++..+. +.+....|++|++
T Consensus 17 ~a~aI~~~~~----v~v~~~~~~~~~~~~~-----------~--------~-~n~i~~~~~~~~---~~~~~~~g~~i~i 69 (261)
T TIGR01920 17 GAFGIDLWVE----AKVREGDEAGVSTYVR-----------G--------N-PRLIERILTAIR---SKFGIVDGLEVEV 69 (261)
T ss_pred eEEEccCceE----EEEEECCCCceeeeec-----------C--------C-hHHHHHHHHHHH---HhcCCCCCEEEEE
Confidence 4567777765 7777765443332211 0 0 145555555442 1223346899999
Q ss_pred eeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC--CCChhhhhHhhcccCeeEEecCCCCccee
Q 002861 638 WANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMG--TGGGWQDQIGGLYPGIKFTSSFPGIPLRL 715 (873)
Q Consensus 638 ~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g--~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~ 715 (873)
.++||.++|||||||+++|++.|++++++.+++++++++++.++|...+ ..+|.||++++++||+.+.+..+. +
T Consensus 70 ~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG~~~~~~~~~---~- 145 (261)
T TIGR01920 70 ESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGGIVITDNRRM---K- 145 (261)
T ss_pred ecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCCEEEEeCCCc---e-
Confidence 9999999999999999999999999999999999999999999998643 568999999999999988764332 1
Q ss_pred EEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 002861 716 QVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLE 795 (873)
Q Consensus 716 ~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~ 795 (873)
.+.+++.+ +..++++.++...+|..+-..+ +..+...++++.++++.+|+. ++|+.
T Consensus 146 ~~~~~~~~-------~~~~vv~~p~~~~tt~~~~~~~--------------l~~~~~~~~~~~~~~~~~~l~---~am~~ 201 (261)
T TIGR01920 146 ILKRDKLE-------GCTAAVLVPKEGERRENVDLNR--------------FRRISPVVEEAFNLALRGEYL---KAMVL 201 (261)
T ss_pred EEEecCCC-------CceEEEEECCCCcccccccHHH--------------hhhcchHHHHHHHHHhhCCHH---HHHhh
Confidence 12233322 2367888887755554321111 222334556677888888876 67888
Q ss_pred HHHHH-hhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhc
Q 002861 796 AWRLH-QELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD 857 (873)
Q Consensus 796 ~~~~~-~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~ 857 (873)
++.++ ..+ +++.+ +++.+++ |++|+||||+|+ |+++|+++ . +++.+.|++.
T Consensus 202 n~~l~~~~l--g~~~~----~i~~a~~~Galga~lSGaG~--sv~aL~~~-~--~~v~~~~~~~ 254 (261)
T TIGR01920 202 NGVAYATAL--GYPLE----PASKALEAGAAAAGLSGKGP--SYFALTED-P--EEAAEALMEF 254 (261)
T ss_pred ChHHhHHhh--CCChH----HHHHHHHcCCcEEeecCCCC--eEEEEeCC-H--HHHHHHHHhC
Confidence 87655 334 35444 4455655 999999999855 99999985 2 6788888875
No 39
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.85 E-value=1.1e-19 Score=196.96 Aligned_cols=268 Identities=15% Similarity=0.115 Sum_probs=182.0
Q ss_pred EEEeceEEEeecccccCCCccc--CCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861 530 KVELPVRIDFAGGWSDTPPWSL--ERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN 607 (873)
Q Consensus 530 ~v~aP~Rv~L~G~~tD~~~~~~--~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~ 607 (873)
..+||+||||+ .+..+..- .|.-..+..+|+++.+ +++++.+ .+.+..+.. .+ |.
T Consensus 3 ~~~a~aKiNL~---L~i~~kr~dgyH~l~s~~~ai~l~d~----v~i~~~~--~~~i~~~~~---------~~--~~--- 59 (275)
T PRK14611 3 VLLSPAKVNLG---LWILGKRPDGYHEIFTIYHTIDLYDR----IYIKEHH--TLEVKTSSP---------QI--KE--- 59 (275)
T ss_pred eeeecceEEee---eccCcCCCCCcchhhheeEeccCCcE----EEEEECC--cEEEEeCCC---------CC--CC---
Confidence 45899999998 33322211 1455678899999998 6776643 244433210 11 21
Q ss_pred ChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC
Q 002861 608 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGT 687 (873)
Q Consensus 608 ~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~ 687 (873)
+.+++..++..+. +......|++|++.++||.++|||||||.++|++.|++++++.+++.++|+++|..+|.
T Consensus 60 -~~n~v~~a~~~~~---~~~g~~~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~~---- 131 (275)
T PRK14611 60 -EENIVYKALRLFE---RYTGIDINYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSISA---- 131 (275)
T ss_pred -cccHHHHHHHHHH---HHhCCCCCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC----
Confidence 2346666665542 12223468999999999999999999999999999999999999999999999998864
Q ss_pred CChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHH
Q 002861 688 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSI 767 (873)
Q Consensus 688 ~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~ 767 (873)
|...+++||+.+....+. .+.+++.+. ...+++++++...+|+++.+.+.+.+... .
T Consensus 132 -----D~~~~~~Gg~~~~~~~g~-----~~~~~~~~~------~~~~vv~~p~~~~sT~~~~~~l~~~~~~~-------~ 188 (275)
T PRK14611 132 -----DAPFFLKGGFALGRGIGD-----KLEFLEKPI------SREITLVYPNIKSSTGRVYSKVTKQILTN-------K 188 (275)
T ss_pred -----CCCeeecCCeEEEeccCc-----eeEECCcCC------CcEEEEEeCCCCCChHHHHHhcchhhccC-------c
Confidence 777788999998765322 344554322 34789999999999999887543222111 1
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHH-HHHHhhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCCcch
Q 002861 768 KRLTELAKNGRDALMNCDVDELGKIMLEA-WRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAES 846 (873)
Q Consensus 768 ~~i~~~~~~~~~AL~~gd~~~lg~lm~~~-~~~~~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~~ 846 (873)
. ....+..++.++|++.++..+.+. ++.... ..|++.++.+....++.++.|||||+ ++++++++.+
T Consensus 189 ~----~~~~l~~~l~~~~~~~~~~~~~n~l~~~~~~-----~~P~l~~~~~~l~~~~~~~~~SGSG~--tvf~l~~~~~- 256 (275)
T PRK14611 189 E----DLNIIISLLREGEEKKIEEVIENTLGEIALE-----LYPEIKEVYRFLEYLGYKPFVSGSGS--SVYVFGKPSE- 256 (275)
T ss_pred c----hHHHHHHHHHcCCHHHHHHhcCCcccHHHHH-----HCHHHHHHHHHHHhCCCCEEEeCccc--cceeEeCCHH-
Confidence 1 123467788899998887765443 332322 24888998888776556899999999 9999997633
Q ss_pred HHHHHHHHHhcCCCceEEEEEe
Q 002861 847 ATELRRMLEKDSNFNSEVYNWN 868 (873)
Q Consensus 847 a~~i~~~L~~~~~~~v~v~~~~ 868 (873)
++++.+... .-.+|.++
T Consensus 257 --~~~~~~~~~---~~~~~~~~ 273 (275)
T PRK14611 257 --EVKKAAAVR---GWKLIETK 273 (275)
T ss_pred --HHHHHHhhC---CeEEEEEe
Confidence 344444433 22266654
No 40
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.85 E-value=9.1e-20 Score=197.63 Aligned_cols=259 Identities=17% Similarity=0.119 Sum_probs=176.4
Q ss_pred EEEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDH 606 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~ 606 (873)
+.++||++|||. .|..+...+ |.=.++.+||+++.+ +++++.++ .+.+..... .+ |.+.
T Consensus 3 ~~~~a~aKiNl~---L~i~~~~~dgyH~l~sl~~al~l~d~----v~i~~~~~-~~~i~~~~~---------~~--p~~~ 63 (276)
T PRK14612 3 MERLAPAKVNLG---LSVLGRREDGYHELHTLMVPLDVGDR----LEVEPIAS-GLELRVLGA---------DL--PTDE 63 (276)
T ss_pred eEEeeCcEEeec---cccCCCCCCCCceeEEEEEECCCCCE----EEEEECCC-cEEEEcCCC---------CC--CCCC
Confidence 567899999998 777655433 566799999999997 77776543 344432110 11 2221
Q ss_pred CChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC
Q 002861 607 NDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMG 686 (873)
Q Consensus 607 ~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g 686 (873)
++ . +.|++..... ......|++|++.++||.|+|||||||.++|++.+++++++.+++ +.+++..+|
T Consensus 64 ~N-l-i~ka~~~~~~----~~g~~~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g---- 130 (276)
T PRK14612 64 RN-L-VYRAARAYLD----AAGQPGGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVD---LPALALTLG---- 130 (276)
T ss_pred cc-c-HHHHHHHHHH----HhCCCCCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhC----
Confidence 12 1 3344433222 222245899999999999999999999999999999999998775 444444443
Q ss_pred CCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHH
Q 002861 687 TGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS 766 (873)
Q Consensus 687 ~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~ 766 (873)
.|++++++||+.+....+. .+.|++.+ ++.++|++++...+|+++.+.+.... .+..
T Consensus 131 -----~dv~~~~~GG~~~~~g~g~-----~~~~l~~~-------~~~~vv~~P~~~~sT~~a~~~l~~~~--~~~~---- 187 (276)
T PRK14612 131 -----ADVPFFLLGGAAEARGVGE-----RLTPLELP-------PVPLVLVNPGVAVSARDAYRWLEPED--FGPE---- 187 (276)
T ss_pred -----CCcCeeeeCCeEEEEecCc-----cceEcCCC-------CcEEEEECCCCCCCHHHHHHhhcccc--CCCc----
Confidence 2899999999998875322 35566432 45799999999999998886531110 0100
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcc
Q 002861 767 IKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE 845 (873)
Q Consensus 767 ~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~ 845 (873)
..+..+..+|.++|...+...|. .... ...|+++++++.+++ |++|++|||||+ ++++++++.+
T Consensus 188 -----~~~~~l~~~l~~~d~~~~~n~l~---~~~~-----~~~p~l~~i~~~l~~~Ga~~~~lSGsGp--tvfal~~~~~ 252 (276)
T PRK14612 188 -----LDVEAILAALARGEEPPYWNSLE---GPVF-----ARHPELQEVLAALRAAGLRGVLMSGSGS--TCFGLAEDAA 252 (276)
T ss_pred -----ccHHHHHHHHHhcccccccCCcH---HHHH-----HhChHHHHHHHHHHhCCCCEEEEcCcch--hhEEEeCCHH
Confidence 01334566777776433222221 1111 346899999999987 999999999998 9999998867
Q ss_pred hHHHHHHHHHhc
Q 002861 846 SATELRRMLEKD 857 (873)
Q Consensus 846 ~a~~i~~~L~~~ 857 (873)
.++++.+.+++.
T Consensus 253 ~a~~~~~~l~~~ 264 (276)
T PRK14612 253 QAQRAAAALRAR 264 (276)
T ss_pred HHHHHHHHhHhh
Confidence 788899999875
No 41
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.84 E-value=4.9e-19 Score=193.29 Aligned_cols=279 Identities=15% Similarity=0.060 Sum_probs=178.7
Q ss_pred EeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCc-eeeecCCCCCCCCCCCC
Q 002861 532 ELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ-LHIEDLTPIATPFDHND 608 (873)
Q Consensus 532 ~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~-~~~~~l~~l~~p~~~~~ 608 (873)
+||+||||. .|..+..-+ |.-..+...|+++++ +++++.+...+.+.+..... ....-.+++....+..
T Consensus 2 ~apAKINL~---L~I~gkr~dGyH~l~s~~~~i~l~D~----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (297)
T PRK14613 2 ISPAKINLG---LEIPFKREDGFHEIRSVFLKISWGDD----IEIEPAPNGVFELFSTNEIILEKRKLYDQVSERGDIK- 73 (297)
T ss_pred CCCceEeee---ecCCCcCCCCcceeeeEEEEeccCCE----EEEEECCCCcEEEEecccccccccccccccCCCCCcc-
Confidence 589999998 444332221 566789999999998 67776544446555321100 0000000111000111
Q ss_pred hhHHH-HHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC
Q 002861 609 PFRLV-KSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGT 687 (873)
Q Consensus 609 ~~~~~-kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~ 687 (873)
-|++ |++..... ......|++|++.++||.++|||||||.+++++.+++..++. ...+++.++|..+|.
T Consensus 74 -~Nlv~ka~~~~~~----~~~~~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l-~~~e~L~~lA~~lGa---- 143 (297)
T PRK14613 74 -QNILYKTFIKARS----LFPELPGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNF-FTSDEMQVFAKEIGS---- 143 (297)
T ss_pred -cchHHHHHHHHHH----HhCCCCCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHhCC----
Confidence 2344 44433322 223346899999999999999999999999999998886554 234677779988842
Q ss_pred CChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHH
Q 002861 688 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSI 767 (873)
Q Consensus 688 ~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~ 767 (873)
|..+++.||..+.... |. .++|++.++ ..+++++++...+|+++.+.+.+.+......
T Consensus 144 -----DvP~~l~G~~a~~~g~-Ge----~~~~l~~~~-------~~~vlv~P~~~vsT~~a~~~l~~~~~~~~~~----- 201 (297)
T PRK14613 144 -----DVPFFLGEGHAFVTGK-GE----IMEEIEVHK-------GQGILALTPQVMNTGEMYALLKKPLQESASQ----- 201 (297)
T ss_pred -----ccchhhcCCeEEEecC-Cc----EEEEcCCCC-------CeEEEEECCCCcChHHHHHhcchhhcccccc-----
Confidence 8777777776555433 32 355665432 2357888999999998886542222111100
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHH-HHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcc
Q 002861 768 KRLTELAKNGRDALMNCDVDELGKIM-LEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE 845 (873)
Q Consensus 768 ~~i~~~~~~~~~AL~~gd~~~lg~lm-~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~ 845 (873)
......+..+..++.++|++.+...+ |+.......+ .|+++++.+.+.+ |+++++|||||+ ++|+++++.+
T Consensus 202 ~~~~~~~~~~~~al~~~~~~~l~~~l~ndle~~~~~l-----~P~~~~i~~~~~~~Ga~~~~mSGSGp--tvf~l~~~~~ 274 (297)
T PRK14613 202 KNGNTLSEDLISSLKVGDWVSLQGRLENDFEPVAFQL-----HPELGVLKDKFLEFGSSYCSLTGSGS--SMYGLVQGLE 274 (297)
T ss_pred ccccccHHHHHHHHHcCCHHHHHHHhcccchHHHHHh-----CcHHHHHHHHHHHcCCCEEEEEcccc--ceEEEeCCHH
Confidence 01111234577888999999886654 5543344444 4899999998876 899999999987 9999999877
Q ss_pred hHHHHHHHHHhc
Q 002861 846 SATELRRMLEKD 857 (873)
Q Consensus 846 ~a~~i~~~L~~~ 857 (873)
.++++.+.+++.
T Consensus 275 ~a~~~~~~l~~~ 286 (297)
T PRK14613 275 IQEELLPRLRQE 286 (297)
T ss_pred HHHHHHHHHHHh
Confidence 888999999875
No 42
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.82 E-value=6.1e-19 Score=189.88 Aligned_cols=252 Identities=14% Similarity=0.070 Sum_probs=164.0
Q ss_pred EEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861 530 KVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN 607 (873)
Q Consensus 530 ~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~ 607 (873)
..+||+||||. .+..+..-+ |.-..+...|+++++ +++++.++..+.+..... .+ |.+
T Consensus 2 ~~~apaKiNL~---L~v~~~r~dGyH~l~s~~~~i~l~D~----l~i~~~~~~~~~~~~~~~---------~~--~~~-- 61 (269)
T PRK14609 2 ITFPNAKINLG---LNVVEKRPDGYHNLETVFYPIPLTDA----LEITVRSATKTSLTVSGI---------PI--PGD-- 61 (269)
T ss_pred CcCccccEEee---eccCCcCCCCcceeeEEEEECCCCcE----EEEEEcCCCcEEEEeCCC---------CC--CCC--
Confidence 35799999998 333322111 455789999999997 666655444455543211 11 211
Q ss_pred ChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC
Q 002861 608 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGT 687 (873)
Q Consensus 608 ~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~ 687 (873)
.+-|++..++..+.. ... ..|++|++.++||.|+|||||||.++|++.+++++++.+++.++++++|..++
T Consensus 62 ~~~Nlv~~a~~~~~~---~~~-~~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~iG----- 132 (269)
T PRK14609 62 PEDNLVVKAYNLLKK---DFP-LPPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATLG----- 132 (269)
T ss_pred ccccHHHHHHHHHHH---HcC-CCCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC-----
Confidence 123455555544321 122 25899999999999999999999999999999999999999999999998773
Q ss_pred CChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHH
Q 002861 688 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSI 767 (873)
Q Consensus 688 ~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~ 767 (873)
.|...+++||..+....+. .+.+++.+. .+.++++++++...+|+++++.+.+. .+.. .+
T Consensus 133 ----aDvpffl~g~~a~~~G~Ge-----~l~~l~~~~-----~~~~~vlv~P~~~~sT~~a~~~l~~~---~~~~---~~ 192 (269)
T PRK14609 133 ----ADCAFFIRNKPVYATGIGD-----IFSPIDLSL-----SGYYIALVKPDIHVSTAEAYAGIKPH---KPET---SL 192 (269)
T ss_pred ----CCceEEccCCCEEEEEeCC-----eeEECCCCC-----CCCEEEEECCCCCCChHHHHHhhhhc---Ccch---hh
Confidence 2888888898887765432 356664321 14579999999999999998754221 1100 00
Q ss_pred HHHHH-HHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcc
Q 002861 768 KRLTE-LAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE 845 (873)
Q Consensus 768 ~~i~~-~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~ 845 (873)
..+.. ...++...+ .+|++. .+. ...|+++++++.+++ |+++++|||||+ ++++++++.+
T Consensus 193 ~~~~~~~~~~~~~~l-~Ndle~-------------~~~--~~~p~l~~i~~~l~~~ga~~~~mSGSG~--tvf~l~~~~~ 254 (269)
T PRK14609 193 KEIIRQPVEEWKNKL-VNDFED-------------SVF--PKYPEIAEIKEKLYRSGALYAAMSGSGS--SVFGIFKKPP 254 (269)
T ss_pred HHHHhhHHHHHHhhc-CCChHH-------------HHH--HcChHHHHHHHHHHhCCCCeEEEeCccc--eeEEEECChH
Confidence 00000 000011111 122221 121 246899999998887 899999999986 9999998754
Q ss_pred hHH
Q 002861 846 SAT 848 (873)
Q Consensus 846 ~a~ 848 (873)
+.+
T Consensus 255 ~~~ 257 (269)
T PRK14609 255 NLD 257 (269)
T ss_pred HcC
Confidence 443
No 43
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.82 E-value=3.6e-18 Score=184.14 Aligned_cols=253 Identities=15% Similarity=0.109 Sum_probs=173.4
Q ss_pred EEEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDH 606 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~ 606 (873)
+.++||+||||++ | ..+..-+ |.-..+.++|+++++ +++++.++..+.+.+.. .++ +
T Consensus 7 ~~~~apaKiNL~L-~--v~~~r~dGyH~l~s~~~~i~l~D~----v~i~~~~~~~~~i~~~~---------~~~--~--- 65 (271)
T PRK00343 7 LDWPAPAKLNLFL-H--ITGRRADGYHELQTLFQFLDWGDT----LHFEVRDDGEIRLLTPI---------PGV--P--- 65 (271)
T ss_pred EEEeeeeeEEEEe-e--cCCcCCCCCCeeeEEEEEcccceE----EEEEECCCCcEEEeCCC---------CCC--C---
Confidence 6679999999997 3 3222221 556789999999987 77777655445554321 011 1
Q ss_pred CChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC
Q 002861 607 NDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMG 686 (873)
Q Consensus 607 ~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g 686 (873)
.+.+++..++..+. +......|++|++.++||.|+|||||||.++|++.+++++++.++++++++++|.++|.
T Consensus 66 -~~~N~v~~a~~~l~---~~~~~~~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~iga--- 138 (271)
T PRK00343 66 -EEDNLIVRAARLLQ---KATGTPLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLGA--- 138 (271)
T ss_pred -CcccHHHHHHHHHH---HHhCCCCCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC---
Confidence 12457766665543 12233468999999999999999999999999999999999999999999999987753
Q ss_pred CCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHH
Q 002861 687 TGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS 766 (873)
Q Consensus 687 ~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~ 766 (873)
|...++.|+..+.... |. .+++++.+ ...++|++|+...+|++++++.. .....+.
T Consensus 139 ------Dvp~~l~g~~~~~~g~-g~----~~~~l~~~-------~~~~vl~~p~~~~sT~~~~~~~~--~~~~~~~---- 194 (271)
T PRK00343 139 ------DVPVFVRGHAAFAEGI-GE----ILTPVDLP-------EKWYLVVKPGVHISTAEIFSDPD--LTRDTPK---- 194 (271)
T ss_pred ------CceEEecCCcEEEEec-CC----EEEECCCC-------CcEEEEEeCCCCcChHHHHhhhh--hccCCCh----
Confidence 6666666666554432 32 34566432 34678999999999999986531 1111110
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcc
Q 002861 767 IKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE 845 (873)
Q Consensus 767 ~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~ 845 (873)
..+. .+......+|++.... .+ .|+++++.+.+.+ |+ +.|||||+ ++|+++++.+
T Consensus 195 -~~~~----~~~~~~~~Ndle~~~~----------~~-----~P~~~~~~~~l~~~ga--~~mSGSG~--tvF~l~~~~~ 250 (271)
T PRK00343 195 -ISIA----DFLAGPFRNDCEPVVR----------KR-----YPEVAQALSWLLEYAP--SRMTGTGA--CVFAEFDTEA 250 (271)
T ss_pred -hhHH----HHHhccccCCHHHHHH----------Hh-----ChHHHHHHHHHHhCCC--eEEecccc--ceEEEcCCHH
Confidence 0111 1122223455555441 22 4888888888876 66 88999999 9999999888
Q ss_pred hHHHHHHHHHhc
Q 002861 846 SATELRRMLEKD 857 (873)
Q Consensus 846 ~a~~i~~~L~~~ 857 (873)
.++++.+.+++.
T Consensus 251 ~a~~~~~~l~~~ 262 (271)
T PRK00343 251 EAEQVLAQLPEW 262 (271)
T ss_pred HHHHHHHHhhhh
Confidence 888999888865
No 44
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.82 E-value=2.4e-18 Score=182.52 Aligned_cols=274 Identities=21% Similarity=0.194 Sum_probs=184.2
Q ss_pred eEEEEeceEEEee----cccccCCCcccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCC
Q 002861 528 TVKVELPVRIDFA----GGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATP 603 (873)
Q Consensus 528 ~v~v~aP~Rv~L~----G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p 603 (873)
++.+.||+||||+ |-..|- | |.-..+...|+++++ +.++++++..+.+..... ..+ |
T Consensus 3 ~~~~~apAKiNL~L~V~gkr~DG--Y---Hel~sl~~~id~~D~----l~i~~~~~~~~~~~~~~~--------~~l--p 63 (289)
T COG1947 3 STKFPAPAKINLFLHVTGKRADG--Y---HELETLFQFIDLGDE----LTIRPRDDDGFIVLGTFA--------DGL--P 63 (289)
T ss_pred ceEeeccceEEEEEEecccCCCC--c---eeeEEEEEEeccCCE----EEEEECCCCCceEecCCC--------CCC--C
Confidence 4778999999998 444442 3 455789999999998 778877655554443211 112 2
Q ss_pred CCCCChhHHH-HHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 002861 604 FDHNDPFRLV-KSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE 682 (873)
Q Consensus 604 ~~~~~~~~~~-kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E 682 (873)
.+ + |++ ||+.... +.+....|++|+++++||.|+|||++||.++|++.+|+++++..++.+||..++.++.
T Consensus 64 ~~--~--NLv~rAa~ll~----~~~~~~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LG 135 (289)
T COG1947 64 TD--E--NLVYRAAELLR----KRTGIAGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLG 135 (289)
T ss_pred Cc--c--hHHHHHHHHHH----HHhCCCCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 21 2 344 4443322 2334567899999999999999999999999999999999999999999999998885
Q ss_pred HHcCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHH
Q 002861 683 QLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNL 762 (873)
Q Consensus 683 ~~~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~ 762 (873)
. |+..+++||..+.+.... +++|+.-++ ...+++++++...+|+.+++.. ....+.+.
T Consensus 136 a---------DVPffl~g~tA~a~G~GE-----~l~~~~~~~------~~~~vl~~P~v~vsT~~vy~~~--~~~~~~~~ 193 (289)
T COG1947 136 A---------DVPFFLSGGTAFAEGRGE-----KLEPLEDPP------EKWYVLAKPGVGVSTKEVYKDP--ELTRNTPK 193 (289)
T ss_pred C---------CcCeeeeCCceEEEEccc-----eeeECCCCC------CceEEEEeCCCCCChHHHHcCc--CcccccCC
Confidence 4 999999999999887643 467776322 4689999999999999998721 11111110
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCHHHHHHHH-HHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEE
Q 002861 763 LISSIKRLTELAKNGRDALMNCDVDELGKIM-LEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLL 840 (873)
Q Consensus 763 ~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm-~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l 840 (873)
. ..+..++...++..+.+.. |+-...-.++ .|++........+ |+.+.+|||+|. |+|++
T Consensus 194 ~-----------~~~~~~~~~~~~~~~~~~~~NdLe~~~~~~-----~p~v~~~~~~l~~~ga~~~~mSGSGs--tvF~l 255 (289)
T COG1947 194 S-----------EPLIAALSLENLKQIAPFLINDLEKVALRL-----YPEVKEALSELLEYGALPARMSGSGS--TVFAL 255 (289)
T ss_pred c-----------hhhhHHHhhhhHhhhccccccchHHHHHHh-----ChHHHHHHHHHhhcccccceEecCCC--cEEEE
Confidence 0 0111112222222222222 2111122333 3777776666664 888999999999 99999
Q ss_pred eCCcchHHHHHHHHHhcCCCceEEEEEee
Q 002861 841 AKDAESATELRRMLEKDSNFNSEVYNWNI 869 (873)
Q Consensus 841 ~~~~~~a~~i~~~L~~~~~~~v~v~~~~i 869 (873)
+++.+.++++.+.+.+. ...-.++.+++
T Consensus 256 ~~~~~~a~~~~~~l~~~-~~~~~~~~~~~ 283 (289)
T COG1947 256 FDTEKEAQRVAEQLPKG-VCGWVVKGVRL 283 (289)
T ss_pred eCChHHHHHHHHHhhcc-cCCcEEEEeec
Confidence 99988899999999863 22334444443
No 45
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.80 E-value=1.1e-17 Score=184.53 Aligned_cols=294 Identities=13% Similarity=0.090 Sum_probs=182.3
Q ss_pred EEEeceEEEeecccccCCC-cccCCCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 002861 530 KVELPVRIDFAGGWSDTPP-WSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND 608 (873)
Q Consensus 530 ~v~aP~Rv~L~G~~tD~~~-~~~~~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~ 608 (873)
+|++|+|+.+. -.|..+ .-+.+|| +++||+-... .+++++.++..+.+....+. .+ |.+ .
T Consensus 2 ~v~~~~rlH~g--~~d~~~~~gr~~Gg--~G~al~~~~~---~v~v~~~~~~~v~~~~~~g~--------~l--~~~--~ 62 (324)
T TIGR00144 2 IINTPSRIHLT--LIDLNGSIGRVDGG--VGLALEEPEI---VIGLKESDDMGVEFTSHAEG--------KL--GEE--Y 62 (324)
T ss_pred eeccccccccc--ccCCCCccCccccc--eEEEEeCCcE---EEEEEECCCceEEecccccc--------cc--cch--h
Confidence 58899999875 223322 1222344 6778875443 37777776655554432111 11 111 1
Q ss_pred hhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCC
Q 002861 609 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTG 688 (873)
Q Consensus 609 ~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~ 688 (873)
..+.+..++..+. +... ..|++|++.++||.++|||||||+++|++.|++++++.++++++|++++.+.|.
T Consensus 63 ~~n~~~~~~~~~~---~~~g-~~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge~----- 133 (324)
T TIGR00144 63 RRSRIMEAARKTL---KHIG-SEGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGGT----- 133 (324)
T ss_pred HHHHHHHHHHHHH---HHhC-CCCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCC-----
Confidence 2334444443321 1111 258999999999999999999999999999999999999999999999986553
Q ss_pred ChhhhhHhhcccCeeEEecC---CC-Cc---------ceeEEEeecCChhhhhhcCcEEEEEEeCCc--chHHHH--HHH
Q 002861 689 GGWQDQIGGLYPGIKFTSSF---PG-IP---------LRLQVIPLLASPQLILELQQRLLVVFTGQV--RLAHQV--LQK 751 (873)
Q Consensus 689 ~G~~Dq~~~~~GG~~~~~~~---~~-~~---------~~~~v~pl~~~~~~~~~~~~~lllv~tg~t--r~t~~~--l~~ 751 (873)
+| +|++++++||+.+.... .. .+ ....+..+++| +++++++.+... ..++++ +++
T Consensus 134 s~-~~va~~~~GG~vv~~G~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-------~~~~vlviP~~~~t~~are~~~lp~ 205 (324)
T TIGR00144 134 SG-IGVASFEDGGFIVDGGHSSKEKSDFLPSSASSAKPAPVIARYDFP-------DWNIILAIPEIDSVSGRREVNIFQK 205 (324)
T ss_pred Cc-cceeeeeeCCEEEECCcccccccccCcccccCCCCCCeEEecCCC-------CcEEEEEecCCCCCCcHHHHHHHHh
Confidence 22 47999999999887421 00 00 00112233332 578898888765 233333 544
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHH-HHHHHHHhccCHHHHHHHHHHHHHH-HhhhCCCCChHHHHHHHHHHccCCceEEec
Q 002861 752 VVTRYLQRDNLLISSIKRLTELA-KNGRDALMNCDVDELGKIMLEAWRL-HQELDPHCSNEFVDRLFAFADPYCCGYKLV 829 (873)
Q Consensus 752 v~~~~~~~~~~~~~~~~~i~~~~-~~~~~AL~~gd~~~lg~lm~~~~~~-~~~l~~~vs~p~l~~l~~~a~~ga~G~kls 829 (873)
. ..-+.+ + ..++...+ .++..+|.++|++.|++.|++.... .+++-++.-.+.+..+++.+.+ ++|+-+|
T Consensus 206 ~----~~i~~~--d-v~~~~~~~l~~l~~al~~~d~~~~~~~l~d~~~~~f~~~~~~~r~~li~~~~~~l~~-a~g~~iS 277 (324)
T TIGR00144 206 Y----CPVPLR--D-VERICHLILMKMMPAVVEGDLDAFGESVNEIQGLGFKKIERELQDPLIKRIIDSMIS-APGAGMS 277 (324)
T ss_pred c----CCCCHH--H-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcchhhhccccCHHHHHHHHHHHh-ccCceec
Confidence 2 001111 1 23333332 3468999999999999999875432 1112111235667776666653 4889999
Q ss_pred CCCccceeEEEeCCcchHHHHHHHHHhc---CCCceEEEEEeecc
Q 002861 830 GAGGGGFALLLAKDAESATELRRMLEKD---SNFNSEVYNWNIYL 871 (873)
Q Consensus 830 GAGgGG~v~~l~~~~~~a~~i~~~L~~~---~~~~v~v~~~~i~~ 871 (873)
|+|+ ++|+++++. ++++.+.+.+. .+...+++..+++.
T Consensus 278 GsGP--Tv~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~n 318 (324)
T TIGR00144 278 SFGP--TVYAVTDEK--PGNIAGAVADIFGPYGVYGRIIVTKARN 318 (324)
T ss_pred CCCC--eEEEEecCc--hHHHHHHHHHHhhhCCCceEEEEEccCC
Confidence 9999 999999862 44555555442 23577888888775
No 46
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.80 E-value=8.6e-18 Score=182.42 Aligned_cols=261 Identities=18% Similarity=0.167 Sum_probs=170.3
Q ss_pred eEEEEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecC-CcEEEEeCCCCceeeecCCCCCCCC
Q 002861 528 TVKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKM-SGVLISDDAGNQLHIEDLTPIATPF 604 (873)
Q Consensus 528 ~v~v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~-~~i~i~~~~~~~~~~~~l~~l~~p~ 604 (873)
.+.+.||+||||. .|..+..-+ |.-..+.++|+++.+ +++++.++ ..+.+.... .+ +
T Consensus 3 ~~~~~apAKINL~---L~v~g~r~dGyH~l~s~~~~i~l~D~----l~i~~~~~~~~~~~~~~~----------~~--~- 62 (283)
T PRK14610 3 KFLVKAPAKINLF---LHIVGKSESGYHLLESLFVFVNLYDF----LEIKIGSKNRGVEFVNSL----------KI--N- 62 (283)
T ss_pred ceEEeecceEEee---eccCCcCCCCcchhheeeEEcCCCCE----EEEEECCCCCeEEEeCCC----------CC--C-
Confidence 3788999999998 444333221 455788999999998 67776543 234443210 11 1
Q ss_pred CCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 002861 605 DHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL 684 (873)
Q Consensus 605 ~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~ 684 (873)
.. -|++..|+..+. +......|++|++.++||.++|||||||.++|++.+++++++ ++.+++.+++..+.
T Consensus 63 ~~---~Nlv~kA~~~l~---~~~~~~~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~lG-- 132 (283)
T PRK14610 63 RY---NNTVQRAIGLLL---RHSPVRTNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSVG-- 132 (283)
T ss_pred CC---CcHHHHHHHHHH---HHhCCCCCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhC--
Confidence 11 234433333331 122234589999999999999999999999999999999996 79999999998763
Q ss_pred cCCCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEe-CCcchHHHHHHHHHHHHhhcCHHH
Q 002861 685 MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFT-GQVRLAHQVLQKVVTRYLQRDNLL 763 (873)
Q Consensus 685 ~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~t-g~tr~t~~~l~~v~~~~~~~~~~~ 763 (873)
-|+..+++||..+.+.... +++|++... +..+++|+.+ +...+|+++++++....... +
T Consensus 133 -------aDvPffl~g~~a~~~G~Ge-----~l~~l~~~~-----~~~~~vl~~p~~~~~sT~~vy~~~~~~~~~~-~-- 192 (283)
T PRK14610 133 -------SDVPACLDSKTLFVRGIGE-----DILLLPDLS-----LPTYVVLVAPKGKFLSTRKVFNKYECKAFSE-P-- 192 (283)
T ss_pred -------CCCcEEEECCeEEEEeccc-----EEEECcccC-----CCCeEEEEECCCCccChHHHHHhhcccccCC-c--
Confidence 2999999999998876533 456764211 1335888877 67889999987541111000 0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHH-HHHHHHHHHhhhCCCCChHHHHHHHHHHcc--CCceEEecCCCccceeEEE
Q 002861 764 ISSIKRLTELAKNGRDALMNCDVDELGK-IMLEAWRLHQELDPHCSNEFVDRLFAFADP--YCCGYKLVGAGGGGFALLL 840 (873)
Q Consensus 764 ~~~~~~i~~~~~~~~~AL~~gd~~~lg~-lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~l 840 (873)
...+ .+..+++..+.. +.|+-...... ..|++.++++.+++ |++++.|||||+ |+|++
T Consensus 193 ---~~~~---------~~~~~~~~~~~~~~~Ndle~~~~~-----l~P~l~~~~~~l~~~~ga~~a~mSGSGs--Tvf~l 253 (283)
T PRK14610 193 ---IDNL---------PVAQDDLLELLKEARNDLLETAIS-----LVPEIEEILFVLESLEGCILSRMSGSGA--TCFAL 253 (283)
T ss_pred ---cccc---------ccchhHHHHHHHHhcCchHHHHHH-----hChHHHHHHHHHHhcCCCceEEEeCccc--ceeEE
Confidence 0000 111122211111 11111111222 25899999998863 789999999999 99999
Q ss_pred eCCcchHHHHHHHHHhc
Q 002861 841 AKDAESATELRRMLEKD 857 (873)
Q Consensus 841 ~~~~~~a~~i~~~L~~~ 857 (873)
+++.+.++++.+.+++.
T Consensus 254 ~~~~~~a~~~~~~l~~~ 270 (283)
T PRK14610 254 FEEEEAAEAAARYLKMT 270 (283)
T ss_pred eCCHHHHHHHHHHhhhh
Confidence 98877788999888764
No 47
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.75 E-value=1.1e-16 Score=172.03 Aligned_cols=247 Identities=14% Similarity=0.090 Sum_probs=163.4
Q ss_pred EEeceEEEeecccccCCCcccC--CCCeEEEeeeecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 002861 531 VELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND 608 (873)
Q Consensus 531 v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~~ 608 (873)
++||+||||. .|..+..-+ |.-..+...|+++++ +++++.+...+.+... ..+ +. .
T Consensus 3 ~~apAKINL~---L~V~gkR~DGYH~l~sl~~~i~l~D~----l~i~~~~~~~i~i~~~----------~~~--~~-~-- 60 (288)
T PRK00650 3 FFSPAKLNLF---LQLLGKREDGFHEIVTRYQAIAFGDQ----LSLSISSRDSLQVINA----------CHL--ET-P-- 60 (288)
T ss_pred ccccceEEee---eccCCcCCCCCcceeEEEEEcCCCCE----EEEEECCCCcEEEeCC----------CCC--Cc-c--
Confidence 4799999998 444333222 566789999999997 6776654444544311 011 11 1
Q ss_pred hhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCC
Q 002861 609 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTG 688 (873)
Q Consensus 609 ~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~ 688 (873)
-|++-.|+..+. +......|++|++.++||.|+|||||||.++|++.+++++++.+++++++.++|.++|.
T Consensus 61 -~Nlv~ra~~~l~---~~~g~~~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lGa----- 131 (288)
T PRK00650 61 -SNSIWKSVALFR---RYTGITTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIGM----- 131 (288)
T ss_pred -ccHHHHHHHHHH---HHhCCCCCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-----
Confidence 123333333321 12223458999999999999999999999999999999999999999999999998874
Q ss_pred ChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHH
Q 002861 689 GGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIK 768 (873)
Q Consensus 689 ~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~ 768 (873)
|+.+++.||..+...... .+++++.++ +.+++++.++...+|+++.+.. + .....
T Consensus 132 ----DvPffl~~g~a~~~G~Ge-----~l~~~~~~~------~~~~vlv~P~~~vsT~~ay~~~-~---~~~~~------ 186 (288)
T PRK00650 132 ----DTPFFFSTGSALGVGRGE-----KIIALEESV------SDRYVLYFSSEGVLTSRAFAYV-Q---PSDCS------ 186 (288)
T ss_pred ----cchhhhcCceEEEEecCC-----EEEECcCCC------CceEEEEeCCCCCChHHHHHhh-c---ccccc------
Confidence 888888889888775432 356664332 3578999999999999887541 1 11000
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CC-ce--EEecCCCccceeEEEeCCc
Q 002861 769 RLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YC-CG--YKLVGAGGGGFALLLAKDA 844 (873)
Q Consensus 769 ~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga-~G--~klsGAGgGG~v~~l~~~~ 844 (873)
. .... .-..+|++.. ... ..|++.++.+.+.+ ++ .| +.|||+|+ ++|++++++
T Consensus 187 -~---~~~~--~~~~Ndle~~----------~~~-----~~p~i~~~~~~l~~~~~~~~~~~~MSGSGs--t~F~l~~~~ 243 (288)
T PRK00650 187 -S---RKNL--EYTQNDLEKP----------VFR-----LRLDLKEKKHWLESLWAELPVHVGLTGSGA--TLFVRYPEI 243 (288)
T ss_pred -h---hhHh--ccCCCchHHH----------HHH-----hChHHHHHHHHHHhccccCCCeEEEeCccc--CEEEEeCCH
Confidence 0 0000 0012232221 112 24788888888776 33 23 77999999 999999987
Q ss_pred chHHHHH-HHHHh
Q 002861 845 ESATELR-RMLEK 856 (873)
Q Consensus 845 ~~a~~i~-~~L~~ 856 (873)
+.++++. +.+++
T Consensus 244 ~~~~~~~~~~~~~ 256 (288)
T PRK00650 244 LEKDPSYAAQIQR 256 (288)
T ss_pred HHHHHHHHHHhHh
Confidence 6666666 55544
No 48
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.72 E-value=6.6e-18 Score=177.29 Aligned_cols=203 Identities=15% Similarity=0.164 Sum_probs=144.8
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCC-CCCcccccccccccceeecCCHHHHhhcCccc
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAK-DGILNENYALSLVDDLLQKPNVDELAKNHAIL 75 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~-~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~ 75 (873)
++|||||+|+|.+|+. ++|+.|+.+.|++- ++.|||++.|+ .+ +|.+|.|||++ +..
T Consensus 118 LnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vde--pSkyGvv~~d~~~g---------rV~~F~EKPkd--~vs----- 179 (371)
T KOG1322|consen 118 LNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDE--PSKYGVVVIDEDTG---------RVIRFVEKPKD--LVS----- 179 (371)
T ss_pred ecCCeeecCCHHHHHHHHHhcCCceEEEEEeccC--ccccceEEEecCCC---------ceeEehhCchh--hhh-----
Confidence 5799999999999999 89999999998765 99999999999 45 89999999994 221
Q ss_pred CCCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhcccccccccccCCCc--hhHHhh----h
Q 002861 76 DDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRPLG--KELVSK----L 149 (873)
Q Consensus 76 ~~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~~~~~~~Y~~~~pvg--d~~~~~----l 149 (873)
.-++||+|+|+++++.+++. .++.++++++|. ... .--+|++ -.++||-| +| ..|+.+ +
T Consensus 180 ----nkinaGiYi~~~~vL~ri~~---~ptSiekEifP~--~a~--~~~l~a~--~l~gfWmD--IGqpkdf~~g~~~Yl 244 (371)
T KOG1322|consen 180 ----NKINAGIYILNPEVLDRILL---RPTSIEKEIFPA--MAE--EHQLYAF--DLPGFWMD--IGQPKDFLTGFSFYL 244 (371)
T ss_pred ----ccccceEEEECHHHHhHhhh---cccchhhhhhhh--hhh--cCceEEE--ecCchhhh--cCCHHHHHHHHHHHH
Confidence 12349999999999998883 344499999943 221 1223344 23679999 87 677776 3
Q ss_pred hcCcce--EEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEe-eeecCCceeCCCcEEEE
Q 002861 150 GKQRMF--SYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLS-SKIAHGVSIGEDSLIYD 226 (873)
Q Consensus 150 ~~~~i~--~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~-Svl~~~v~v~~~s~Ve~ 226 (873)
+..|.+ .-++||++-. ...+.++.++. ..++.|-. |+++++|+|++|..|++
T Consensus 245 ~s~~~~t~~r~~p~~~i~---------------------~nvlvd~~~~i----G~~C~Ig~~vvIG~r~~i~~gV~l~~ 299 (371)
T KOG1322|consen 245 RSLPKYTSPRLLPGSKIV---------------------GNVLVDSIASI----GENCSIGPNVVIGPRVRIEDGVRLQD 299 (371)
T ss_pred hhCcccCCccccCCcccc---------------------ccEeecccccc----CCccEECCCceECCCcEecCceEEEe
Confidence 344333 2233443222 12234444432 24544544 89999999999999999
Q ss_pred ceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeeee
Q 002861 227 SNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEV 271 (873)
Q Consensus 227 s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~v 271 (873)
|.++++..++.++-|+.+++.- ++.|-.+..++-.
T Consensus 300 s~il~~~~~~~~s~i~s~ivg~----------~~~IG~~~~id~~ 334 (371)
T KOG1322|consen 300 STILGADYYETHSEISSSIVGW----------NVPIGIWARIDKN 334 (371)
T ss_pred eEEEccceechhHHHHhhhccc----------cccccCceEEecc
Confidence 9999999999999999998744 4666666644433
No 49
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.68 E-value=1.5e-16 Score=183.02 Aligned_cols=225 Identities=14% Similarity=0.148 Sum_probs=158.2
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
+.||+++.+|+.+|+. +++++|++..+++.+..+.+|++.+|+++ +|.+|.|||..++ ....+
T Consensus 135 l~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~---------~V~~~~EKp~~~~----~~~~~ 201 (425)
T PRK00725 135 LAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDEND---------RITAFVEKPANPP----AMPGD 201 (425)
T ss_pred ecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCC---------CEEEEEECCCCcc----ccccC
Confidence 5799999999999987 67999999999888889999999999876 7999999997653 01123
Q ss_pred CCccceeeceeeecchHHHHHHhhhc----CCchhhhhhhccccchhhhHHHHhhc-----c-c-ccccccccCCCc--h
Q 002861 77 DGRALLDTGIIAVRGKAWEELVMLSC----SCPPMVSELLKSGKEMSLYEDLVAAW-----V-P-AKHDWLMLRPLG--K 143 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~~ll~~~~----~~~d~g~d~~~~~~~~~~y~df~~~~-----~-~-~~~~Y~~~~pvg--d 143 (873)
+...++++|+|+|+.+.+.++|.... ...++..|+++. .+....-+.+.+ . + ..+.||.| +| +
T Consensus 202 ~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~--l~~~~~v~~~~~~g~~~~~~~~~~gyw~d--igt~~ 277 (425)
T PRK00725 202 PDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPK--IVEEGKVYAHPFSDSCVRSDPEEEPYWRD--VGTLD 277 (425)
T ss_pred ccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHH--HhccCcEEEEEecCCccccccccCCeEEE--CCCHH
Confidence 34678999999999999988876432 123455555522 121111111111 1 1 23469999 86 6
Q ss_pred hHHhh----hhcCc---ce---------EEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeE
Q 002861 144 ELVSK----LGKQR---MF---------SYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVV 207 (873)
Q Consensus 144 ~~~~~----l~~~~---i~---------~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V 207 (873)
.|+++ +...| +| ....||++|+..+. +-.+.+.++.+.. +|++.++.|
T Consensus 278 ~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~---------------~~~~~~~~s~i~~-~~~i~~~~i 341 (425)
T PRK00725 278 AYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRS---------------GRRGMAINSLVSG-GCIISGAVV 341 (425)
T ss_pred HHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCC---------------CCcceEEeCEEcC-CcEEcCccc
Confidence 67766 22221 11 11234555543211 1112345666766 445578889
Q ss_pred EeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 208 LSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 208 ~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
.+|+|+++|.|++++.|++|+|++++.||++|.|.+++|+++ ++|++++++
T Consensus 342 ~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~----------~~i~~~~~i 392 (425)
T PRK00725 342 RRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRG----------CVIPEGMVI 392 (425)
T ss_pred cCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCC----------CEECCCCEE
Confidence 999999999999999999999999999999999999999998 888888755
No 50
>PRK05905 hypothetical protein; Provisional
Probab=99.66 E-value=5.1e-15 Score=157.09 Aligned_cols=243 Identities=18% Similarity=0.077 Sum_probs=153.9
Q ss_pred EEeceEEEeecccccCCCccc---CCCCeEEEeee-ecccccceeEEEEEecCC--cEEEEeCCCCceeeecCCCCCCCC
Q 002861 531 VELPVRIDFAGGWSDTPPWSL---ERAGCVLNVAI-SLESSLPIGTIIETTKMS--GVLISDDAGNQLHIEDLTPIATPF 604 (873)
Q Consensus 531 v~aP~Rv~L~G~~tD~~~~~~---~~gG~Vl~~AI-~l~~~~pi~~~v~~~~~~--~i~i~~~~~~~~~~~~l~~l~~p~ 604 (873)
++||+||||. .|..+..- .|.-..+...| +++++ +++++.++. .+.+..... .. +.
T Consensus 3 ~~apAKINL~---L~I~gkR~DdGYHel~sv~~~i~~l~D~----l~i~~~~~~~~~i~~~~~~~---------~~--~~ 64 (258)
T PRK05905 3 YKSYAKINLG---LSIYKKCKKVTKHKLESIFILVENVYDD----IEIEKIEKNIDDIHYFDETN---------EI--LV 64 (258)
T ss_pred ccccceEEee---eeecccCCCCCCcceeEEEEEccccccE----EEEEECCCCCceEEEeCCCc---------CC--CC
Confidence 5799999998 44433322 15667899999 99987 666665432 344432110 00 11
Q ss_pred CCCChhHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 002861 605 DHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL 684 (873)
Q Consensus 605 ~~~~~~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~ 684 (873)
+ +..-++||+..... ......|++|++.++||.|+|||||||.++|++.+|+++++ ++.+++.+++..+..
T Consensus 65 ~--~nli~~ka~~~l~~----~~~~~~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~lGA- 135 (258)
T PRK05905 65 Y--SRLILVKTLEWLRD----KYNIKNHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKLGS- 135 (258)
T ss_pred C--cchHHHHHHHHHHH----HhCCCCCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHhCC-
Confidence 1 22222266544332 22234689999999999999999999999999999999998 689999999987753
Q ss_pred cCCCChhhhhHhhccc-CeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHH
Q 002861 685 MGTGGGWQDQIGGLYP-GIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLL 763 (873)
Q Consensus 685 ~g~~~G~~Dq~~~~~G-G~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~ 763 (873)
|+..+++| |..+.+.... .++|+..++ ..+++|++++...+|++++++...........
T Consensus 136 --------DVPFfl~g~~~a~~~G~GE-----~l~pl~~~~------~~~~vlv~P~~~vST~~vY~~~~~~~~~~~~~- 195 (258)
T PRK05905 136 --------DIPFFLSGYKTAYISDYGS-----QVEDLIGQF------KLTYKVIFMNVNVSTKKVFEKFDDNQHVIKNN- 195 (258)
T ss_pred --------CcceEEeCCccEEEEeeCc-----eeEECCCCC------CceEEEECCCCCCCHHHHHHhhccccCCcccc-
Confidence 99999999 8998886543 467774332 34689999999999999986531110000000
Q ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHH-HHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEe
Q 002861 764 ISSIKRLTELAKNGRDALMNCDVDELGKIM-LEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLA 841 (873)
Q Consensus 764 ~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm-~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~ 841 (873)
... ....+.++. ...+ |+-...... ..|++.++.+.+.+ ++ .+.|||||+ ++|++-
T Consensus 196 ---~~~-------~~~~~~~~~----~~~~~NdLe~~a~~-----~~P~i~~~~~~l~~~g~-~a~MSGSGs--tvF~l~ 253 (258)
T PRK05905 196 ---FKT-------IIKNLKENI----VVNIHNDLQEPCFE-----LYPNLLYKYNELLNDGF-YTILSGAGS--SFIVIK 253 (258)
T ss_pred ---hHH-------HHHHHHHhh----hcccccccHHHHHH-----hChHHHHHHHHHHhCCC-CEEEeCcch--hheEEe
Confidence 000 011111110 0111 111111122 24888888888876 54 889999999 888874
Q ss_pred C
Q 002861 842 K 842 (873)
Q Consensus 842 ~ 842 (873)
+
T Consensus 254 ~ 254 (258)
T PRK05905 254 K 254 (258)
T ss_pred e
Confidence 3
No 51
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.60 E-value=1.9e-15 Score=174.14 Aligned_cols=231 Identities=15% Similarity=0.150 Sum_probs=153.0
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhc-----
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKN----- 71 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~----- 71 (873)
+.||+++.+|+..|+. .++++|++..|++.+..+.+|++.+|+++ +|..|.+||..+.....
T Consensus 122 l~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g---------~V~~~~Ekp~~~~~~~~~~~~s 192 (429)
T PRK02862 122 LSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDG---------RITEFSEKPKGDELKAMAVDTS 192 (429)
T ss_pred ecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCC---------cEEEEEECCCccccchhccccc
Confidence 4799999999999987 67899999999988889999999999877 79999999975421100
Q ss_pred -----CcccCCCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhcccccccccccCCCc--hh
Q 002861 72 -----HAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRPLG--KE 144 (873)
Q Consensus 72 -----~a~~~~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~~~~~~~Y~~~~pvg--d~ 144 (873)
..-......++++|+|+|+.+.+.+++.......++++|+++. .+.-+. ++++ ..+.||.+ +| +.
T Consensus 193 ~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~--l~~~~~--v~~~--~~~g~w~d--igt~~~ 264 (429)
T PRK02862 193 RLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPE--AIRDYK--VQSY--LFDGYWED--IGTIEA 264 (429)
T ss_pred ccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHH--HhccCc--EEEE--EeCCEEEe--CCCHHH
Confidence 0001123458899999999999988876432234666677632 221111 1111 22569998 76 66
Q ss_pred HHhh----h-hcCcceEEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeC
Q 002861 145 LVSK----L-GKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIG 219 (873)
Q Consensus 145 ~~~~----l-~~~~i~~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~ 219 (873)
|+++ + ...|...+..+....+ +.. .......+ ....+.++.++.++.| .++.|.+|+|+++|+|+
T Consensus 265 y~~an~~l~~~~~~~~~~~~~~~~i~--~~~------~~~~~a~~-~~~~~~~~~ig~~~~i-~~~~i~~svi~~~~~Ig 334 (429)
T PRK02862 265 FYEANLALTQQPNPPFSFYDEKAPIY--TRA------RYLPPSKL-LDATITESIIAEGCII-KNCSIHHSVLGIRSRIE 334 (429)
T ss_pred HHHHHHHHHcCCCCcccccCCCCcee--ccC------CCCCCccc-cccEEEeCEECCCCEE-CCcEEEEEEEeCCcEEC
Confidence 7765 2 1111110000000000 000 00000011 1123445666654444 78889999999999999
Q ss_pred CCcEEEEceeCC-------------------CeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 220 EDSLIYDSNISS-------------------GIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 220 ~~s~Ve~s~l~~-------------------~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
+++.|++|+|++ +++||++|.|.+++++++ +.|.+++.+
T Consensus 335 ~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~----------~~i~~~~~~ 392 (429)
T PRK02862 335 SGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKN----------ARIGNNVRI 392 (429)
T ss_pred CCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCC----------cEECCCcEE
Confidence 999999999987 699999999999999998 889888755
No 52
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.58 E-value=4.8e-14 Score=150.39 Aligned_cols=177 Identities=15% Similarity=0.062 Sum_probs=123.1
Q ss_pred EEeceEEEeecccccCCCcccC--CCCeEEEeee-ecccccceeEEEEEecCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 002861 531 VELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAI-SLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN 607 (873)
Q Consensus 531 v~aP~Rv~L~G~~tD~~~~~~~--~gG~Vl~~AI-~l~~~~pi~~~v~~~~~~~i~i~~~~~~~~~~~~l~~l~~p~~~~ 607 (873)
.+||+||||. .|..+.. + |.-..+...| +++.+ +++++.++..+.+.... . .|. ++
T Consensus 3 ~~apaKINL~---L~v~~kr-dGyH~l~s~~~~i~~l~D~----l~i~~~~~~~~~i~~~~----------~--~p~-~~ 61 (257)
T PRK04181 3 MKAYAKVNIF---LKILGKR-GNYHELISRFVLVKDLFDE----IEFVPKSAESFELIGNF----------D--CPL-EE 61 (257)
T ss_pred ccccceEEEE---EeeCcCC-CCCceeheeeeEccCcCcE----EEEEECCCCCEEEEcCC----------C--CCC-CC
Confidence 4799999998 3332222 2 4556888999 99997 66766444345553210 1 111 11
Q ss_pred ChhHHHHHHHHHhhh-hhhcccc-ccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc
Q 002861 608 DPFRLVKSALLVTGV-IHEKLIE-SMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM 685 (873)
Q Consensus 608 ~~~~~~kaal~~~~~-~~~~~~~-~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~ 685 (873)
| . .+|++...... ....... ..|++|+++++||.|+|||||||.++|++.+++++++.+++++++.++|..+..
T Consensus 62 N-L-v~kA~~~l~~~~~~~~~~~~~~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lGa-- 137 (257)
T PRK04181 62 N-I-IYKAYQELKNKGFSNELIEFFKKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVGA-- 137 (257)
T ss_pred c-H-HHHHHHHHHHhccccccccCCCceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC--
Confidence 2 1 34444332210 0000111 148999999999999999999999999999999999999999999999987753
Q ss_pred CCCChhhhhHhhccc-CeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHH
Q 002861 686 GTGGGWQDQIGGLYP-GIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQK 751 (873)
Q Consensus 686 g~~~G~~Dq~~~~~G-G~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~ 751 (873)
|+..+++| |..+.+.... +++|++..+ .+++|++++...+|++++++
T Consensus 138 -------DvPffl~~~~~a~~~G~Ge-----~l~~l~~~~-------~~~~lv~P~~~vsT~~vy~~ 185 (257)
T PRK04181 138 -------DVAFFISGYKSANVSGIGE-----IVEEFEEEI-------LNLEIFTPNIFCSTKAVYKA 185 (257)
T ss_pred -------CccEEecCCceEEEEeeCC-----eeEECCCCC-------CeEEEECCCCCcCHHHHHHH
Confidence 99999999 8888876543 467774321 24899999999999999865
No 53
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.57 E-value=8.6e-15 Score=167.68 Aligned_cols=224 Identities=17% Similarity=0.165 Sum_probs=154.3
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
+.||+++.+|+.+|+. +++++|+++..++.+..+.+||+.+|+++ +|..|.+||..++- ....
T Consensus 123 ~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~g---------~v~~~~eKp~~~~~----~~~~ 189 (407)
T PRK00844 123 FGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDG---------RIRGFLEKPADPPG----LPDD 189 (407)
T ss_pred ecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCCC---------CEEEEEECCCCccc----ccCC
Confidence 4799999999999987 67899999988888889999999999877 79999999986531 1223
Q ss_pred CCccceeeceeeecchHHHHHHhhhc----CCchhhhhhhccccchhhhHHHHh------hccc--ccccccccCCCc--
Q 002861 77 DGRALLDTGIIAVRGKAWEELVMLSC----SCPPMVSELLKSGKEMSLYEDLVA------AWVP--AKHDWLMLRPLG-- 142 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~~ll~~~~----~~~d~g~d~~~~~~~~~~y~df~~------~~~~--~~~~Y~~~~pvg-- 142 (873)
++..++.+|+|+|+.+.+.++|.... ...++..|+++. .+....-+.+ .+|. ....||.| +|
T Consensus 190 ~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~--l~~~~~v~~~~~~~~~~~g~n~~~~g~w~D--igt~ 265 (407)
T PRK00844 190 PDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPR--LVERGRAYVYDFSTNEVPGATERDRGYWRD--VGTI 265 (407)
T ss_pred CCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHH--HhccCeEEEEEcccccccccccCCCCEEEE--CCCH
Confidence 44568999999999999878776421 224455566522 2211100111 1121 12479999 76
Q ss_pred hhHHhh----hhcCcc---eE---------EEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCccccccccee
Q 002861 143 KELVSK----LGKQRM---FS---------YCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAV 206 (873)
Q Consensus 143 d~~~~~----l~~~~i---~~---------~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~ 206 (873)
+.|+++ |...+- +. ...||+++. ++... ...+.++.++.++.| .++.
T Consensus 266 ~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------------~~~~~~~~ig~~~~I-~~~~ 328 (407)
T PRK00844 266 DAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFV--DGGGR--------------VGSAQDSLVSAGSII-SGAT 328 (407)
T ss_pred HHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEe--cCCCc--------------cceEEeCEEcCCCEE-CCee
Confidence 677765 322211 10 013344432 11000 012334555553444 4788
Q ss_pred EEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 207 VLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 207 V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
|.+|+|+++|+|++++.|++|+|++++.||++|.|.+++++++ ++|.+++.+
T Consensus 329 i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~----------~~i~~~~~i 380 (407)
T PRK00844 329 VRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN----------VVVPPGATI 380 (407)
T ss_pred eEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC----------CEECCCCEE
Confidence 9999999999999999999999999999999999999999887 889888755
No 54
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.53 E-value=3e-12 Score=132.24 Aligned_cols=215 Identities=19% Similarity=0.224 Sum_probs=148.9
Q ss_pred hHHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc--CC
Q 002861 610 FRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM--GT 687 (873)
Q Consensus 610 ~~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~--g~ 687 (873)
.++++.++..+. +.+....|+++.++|+||.|+||.||||.+.|++.|+.++.|.++++-+++++..++-... +.
T Consensus 51 ~~li~~~~~~v~---e~~g~~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSv 127 (278)
T COG1685 51 TRLIERCVERVR---EKYGIPLGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSV 127 (278)
T ss_pred hHHHHHHHHHHH---HHcCCCcceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCceE
Confidence 346766666543 2344556899999999999999999999999999999999999999999999998887654 44
Q ss_pred CChhhhhHhhcccCeeEEecCCCCcceeEEEee-cCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHH
Q 002861 688 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPL-LASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS 766 (873)
Q Consensus 688 ~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl-~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~ 766 (873)
.|-+||..++++||+.+.+.+.- ++... +. .+...++.-++.++.++++--. +
T Consensus 128 TGA~DDa~AS~~GG~~iTDN~~m-----~Ilrr~~~-------~~~~vlI~~p~~k~~~~~vdv~---~----------- 181 (278)
T COG1685 128 TGAFDDACASYLGGIVITDNRKM-----RILRRLDL-------PELTVLILAPGEKRLSANVDVN---R----------- 181 (278)
T ss_pred eccchHHHHHHhCCeEEecchhh-----eehhcccc-------CCceEEEEecCCccccccCCHH---H-----------
Confidence 67899999999999999875432 12221 22 2567788888888776654211 1
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-HHhhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCCcc
Q 002861 767 IKRLTELAKNGRDALMNCDVDELGKIMLEAWR-LHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAE 845 (873)
Q Consensus 767 ~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~-~~~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~ 845 (873)
++.+...++.+.+.-.+|+|.. +|.-|-. ....|+ .. ++-+.++.+.|+.++.+||-|+ ..+++++++
T Consensus 182 ~r~~a~~~e~A~~lA~~G~~~~---Am~lNG~~y~~aLG--~~---~e~~~~ale~GA~~aglSGtGP--a~~Al~~~~- 250 (278)
T COG1685 182 LRLIAPVVEEAFRLALKGEYFK---AMVLNGILYCSALG--YD---LEPALKALEAGAAAAGLSGTGP--AYFALTEDP- 250 (278)
T ss_pred HHHhhHHHHHHHHHHhcccHHH---HHHHhHHHHHHHhC--CC---hHHHHHHHhcccceeccCCCCC--ceEEEecCc-
Confidence 1222223334444445676533 4444432 233342 22 2334555566999999999999 899999875
Q ss_pred hHHHHHHHHHhcCCCceEEEEEeec
Q 002861 846 SATELRRMLEKDSNFNSEVYNWNIY 870 (873)
Q Consensus 846 ~a~~i~~~L~~~~~~~v~v~~~~i~ 870 (873)
+++.+.|.+. .+|+..++.
T Consensus 251 --~~v~ea~~~~----G~V~~t~~~ 269 (278)
T COG1685 251 --EEVAEAWSKI----GDVIETRNV 269 (278)
T ss_pred --HHHHHHHHhC----CeEEEEecC
Confidence 7888888876 456665554
No 55
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.53 E-value=2.4e-14 Score=165.41 Aligned_cols=230 Identities=16% Similarity=0.179 Sum_probs=137.7
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcC---c
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNH---A 73 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~---a 73 (873)
|.||+++.+|+..|+. ++|++|++..+++.+.++++||+.+|+++ +|..|.|||..+..+..+ .
T Consensus 128 ~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~---------~v~~~~Ekp~~~~~~~~~~~~~ 198 (436)
T PLN02241 128 LSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTG---------RIIEFSEKPKGDELKAMQVDTT 198 (436)
T ss_pred ecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCC---------CEEEEEECCCCccccccccccc
Confidence 5799999999999987 68999999999998888999999998877 799999999764211000 0
Q ss_pred c-------cCCCccceeeceeeecchHHHHHHhhhc-CCchhhhhhhccccchhh-hHHHHhhcccccccccccCCCc--
Q 002861 74 I-------LDDGRALLDTGIIAVRGKAWEELVMLSC-SCPPMVSELLKSGKEMSL-YEDLVAAWVPAKHDWLMLRPLG-- 142 (873)
Q Consensus 74 ~-------~~~~~~l~~~Gi~~f~~~~~~~ll~~~~-~~~d~g~d~~~~~~~~~~-y~df~~~~~~~~~~Y~~~~pvg-- 142 (873)
+ .+....++++|+|+|+++.+..++.... ...++++|++ +..+.. +.-+ ++ ..+.||.+ +|
T Consensus 199 ~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil--~~l~~~g~~v~--~~--~~~gyw~d--Ig~~ 270 (436)
T PLN02241 199 VLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEII--PGAIKEGYNVQ--AY--LFDGYWED--IGTI 270 (436)
T ss_pred ccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHH--HHHhhcCCeEE--EE--eeCCEEEE--CCCH
Confidence 0 0112458999999999999988876332 1224555554 222211 0000 00 22469999 76
Q ss_pred hhHHhh----hhcCcceEEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecCCcee
Q 002861 143 KELVSK----LGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSI 218 (873)
Q Consensus 143 d~~~~~----l~~~~i~~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v 218 (873)
+.|+++ |...|...+..+. ..++.++.. .. ...+ ....+.++.+..++.|. ++.|.+|+|+++|+|
T Consensus 271 ~~y~~a~~~~l~~~~~~~~~~~~-~~i~~~~~~------~~-~~~~-~~~~i~~s~I~~~~~I~-~~~I~~svI~~~~~I 340 (436)
T PLN02241 271 KSFYEANLALTKQPPKFSFYDPD-APIYTSPRF------LP-PSKI-EDCRITDSIISHGCFLR-ECKIEHSVVGLRSRI 340 (436)
T ss_pred HHHHHHHHHHhcCCchhhccCCC-CcccccCCC------CC-CcEe-cCCeEEEeEEcCCcEEc-CeEEEeeEEcCCCEE
Confidence 677776 3322211111111 111111100 00 0000 01123334444433344 667777788888888
Q ss_pred CCCcEEEEceeCCC-------------------eEECCCcEEeCcCCCCCCCCCccCccceeeCCCee
Q 002861 219 GEDSLIYDSNISSG-------------------IQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC 267 (873)
Q Consensus 219 ~~~s~Ve~s~l~~~-------------------v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~ 267 (873)
++++.|++|+++++ ++||++|+|.+++|..+ +.|.+++.
T Consensus 341 g~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~----------v~Ig~~~~ 398 (436)
T PLN02241 341 GEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKN----------ARIGKNVV 398 (436)
T ss_pred CCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCC----------CEECCCcE
Confidence 88888888777662 36777777777777665 66666653
No 56
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.47 E-value=9.5e-12 Score=135.94 Aligned_cols=223 Identities=16% Similarity=0.080 Sum_probs=143.4
Q ss_pred HHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChh
Q 002861 612 LVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGW 691 (873)
Q Consensus 612 ~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~ 691 (873)
.++.++..+. +......+++|++.++||.++|||||||.++|++.|++++++.+++.++|+++|.+.|.
T Consensus 68 ~v~~~l~~~~---~~~~~~~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gsG-------- 136 (305)
T TIGR01240 68 KTSNCLDDFR---QLRKEQEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGSG-------- 136 (305)
T ss_pred HHHHHHHHHH---HhcCCCCceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC--------
Confidence 4555555442 12334468999999999999999999999999999999999999999999999998762
Q ss_pred hhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcc---hHHHHHHHHHHHHhhcCHHHHHHHH
Q 002861 692 QDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVR---LAHQVLQKVVTRYLQRDNLLISSIK 768 (873)
Q Consensus 692 ~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr---~t~~~l~~v~~~~~~~~~~~~~~~~ 768 (873)
...++++||++.+....+. .....+|++.++.+ .++. .++++.+.... +|..+ +..+. .++.+...++
T Consensus 137 -sa~~s~~GG~v~~~~g~~~-~~s~a~~i~~~~~~-~~~~-~~v~vv~~~~k~vsSt~gm-~~~~~----ts~~~~~~v~ 207 (305)
T TIGR01240 137 -SACRSLFGGYVAWEKGKDD-HSSAAVQVADDSDW-PQXA-MCVLVVNDIKKDVSSRQGM-QLTVA----TSELFKEWIE 207 (305)
T ss_pred -CeeeeeecCeEEEEcCCCC-CCeeEEECCCcccc-ccce-EEEEEcCCCCCCCCCHHHH-HHhhh----cCccHHHHHH
Confidence 2345899999877642111 11234566544211 0122 33344443333 34433 22211 1223334445
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhh-hC---CC--CChHHHHHHHHHH---cc-CCceEEecCCCccceeE
Q 002861 769 RLTELAKNGRDALMNCDVDELGKIMLEAWRLHQE-LD---PH--CSNEFVDRLFAFA---DP-YCCGYKLVGAGGGGFAL 838 (873)
Q Consensus 769 ~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~~~~~-l~---~~--vs~p~l~~l~~~a---~~-ga~G~klsGAGgGG~v~ 838 (873)
+..+....+.+|+.++|++.+|++...+...+.. +. |. ..+|..-++++.. ++ |...+-..-||+ .+.
T Consensus 208 ~~~~~l~~~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~~g~~~~~T~DAGp--Nv~ 285 (305)
T TIGR01240 208 HVVPDFEVXRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTICYFTMDAGP--NVK 285 (305)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHhCCCcEEEEEcCCC--CEE
Confidence 5554566799999999999999997766443322 21 11 1224444444433 33 656677888998 888
Q ss_pred EEeCCcchHHHHHHHHHhc
Q 002861 839 LLAKDAESATELRRMLEKD 857 (873)
Q Consensus 839 ~l~~~~~~a~~i~~~L~~~ 857 (873)
.++.. +..+++.+.+.+.
T Consensus 286 vl~~~-~~~~~v~~~~~~~ 303 (305)
T TIGR01240 286 VLYLA-ENLSKLFEFIYKL 303 (305)
T ss_pred EEEcc-ccHHHHHHHHHHh
Confidence 89886 6788888888765
No 57
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.47 E-value=1.9e-13 Score=154.20 Aligned_cols=214 Identities=18% Similarity=0.198 Sum_probs=145.3
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
+.||+|+..|+.+|+. .++++|++..+.+.+.++++|++.+|+++ +|.+|.+||..+.- ....
T Consensus 117 ~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~---------~v~~~~ekp~~~~~----~~~~ 183 (361)
T TIGR02091 117 LSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDG---------RIVDFEEKPANPPS----IPGM 183 (361)
T ss_pred ecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECCCC---------CEEEEEECCCCccc----cccc
Confidence 5799999999888887 56788999999888899999999999776 78999999965431 1122
Q ss_pred CCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhcc------c-ccccccccCCCc--hhHHh
Q 002861 77 DGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWV------P-AKHDWLMLRPLG--KELVS 147 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~~------~-~~~~Y~~~~pvg--d~~~~ 147 (873)
++..++++|+|+|+++.+.+++....... ....+.+.|++..+. . ....||.| +| +.|++
T Consensus 184 ~~~~~~~~Giyi~~~~~l~~~l~~~~~~~---------~~~~~~~~d~l~~l~~~~~v~~~~~~~~w~d--igt~~~~~~ 252 (361)
T TIGR02091 184 PDFALASMGIYIFDKDVLKELLEEDADDP---------ESSHDFGKDIIPRALEEGSVQAYLFSGYWRD--VGTIDSFWE 252 (361)
T ss_pred ccccEEeeeEEEEcHHHHHHHHHHHhhcC---------CcccccHHHHHHHHhhcCceEEEeeCCEEEE--CCCHHHHHH
Confidence 35568999999999999877776431100 001111223333331 1 22478988 76 66766
Q ss_pred h----hhcCcceE------------EEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeee
Q 002861 148 K----LGKQRMFS------------YCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSK 211 (873)
Q Consensus 148 ~----l~~~~i~~------------~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Sv 211 (873)
+ |...+... ...++..|+|-+ ..+.++.+.. +|.+.++.|.+|+
T Consensus 253 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------------~~i~~~~ig~-~~~I~~~~v~~s~ 312 (361)
T TIGR02091 253 ANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSD-------------------AQVVDSLVSE-GCIISGATVSHSV 312 (361)
T ss_pred HHHHHhCCCchhhccccCCceecCCCCCCCceEecCC-------------------CEEECCEECC-CCEECCCEEEccE
Confidence 5 33322111 011223333211 1223344444 4455455888999
Q ss_pred ecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 212 IAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 212 l~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
++++|.|+++++|++|+|++++.||++|+|.++++.++ ++|.+++.|
T Consensus 313 i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~----------~~i~~~~~i 359 (361)
T TIGR02091 313 LGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKN----------VRIGEGVVI 359 (361)
T ss_pred ECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCC----------CEECCCCEe
Confidence 99999999999999999999999999999999999887 888888744
No 58
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.45 E-value=2.9e-13 Score=153.87 Aligned_cols=216 Identities=16% Similarity=0.197 Sum_probs=140.9
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
+.||+++.+|+..|+. +++++|++...++.+.++.+||+.+|+++ +|.+|.+||+.+.
T Consensus 123 ~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g---------~V~~~~eKp~~~~--------- 184 (380)
T PRK05293 123 LSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENM---------RIVEFEEKPKNPK--------- 184 (380)
T ss_pred ecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCC---------cEEEEEeCCCCCC---------
Confidence 4699999999999987 57889999888888889999999998776 7999999996442
Q ss_pred CCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhcc-------c-ccccccccCCCc--hhHH
Q 002861 77 DGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWV-------P-AKHDWLMLRPLG--KELV 146 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~~-------~-~~~~Y~~~~pvg--d~~~ 146 (873)
..++.+|+|+|+.+.+.+++...... .....+.+.|++..+. . ..+.||.+ +| +.|+
T Consensus 185 --~~~~~~Giyi~~~~~l~~~l~~~~~~---------~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~d--igt~~~~~ 251 (380)
T PRK05293 185 --SNLASMGIYIFNWKRLKEYLIEDEKN---------PNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKD--VGTIESLW 251 (380)
T ss_pred --cceeeeEEEEEcHHHHHHHHHHHhhc---------CCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEe--CCCHHHHH
Confidence 34789999999999888877633110 0011122234443331 1 22469988 76 5666
Q ss_pred hh----hhcCcceEEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeCCCc
Q 002861 147 SK----LGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDS 222 (873)
Q Consensus 147 ~~----l~~~~i~~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s 222 (873)
++ +...+-..+..+..+.+ -++. ......++....+.++.+.. +|.+. +.|.+|+|+++|+|++++
T Consensus 252 ~a~~~~l~~~~~~~~~~~~~~~~-~~~~-------~~~~~~i~~~~~i~~~~Ig~-~~~I~-~~v~~s~ig~~~~I~~~~ 321 (380)
T PRK05293 252 EANMELLRPENPLNLFDRNWRIY-SVNP-------NLPPQYIAENAKVKNSLVVE-GCVVY-GTVEHSVLFQGVQVGEGS 321 (380)
T ss_pred HHHHHHcCCCchhhhcCCCCcee-cCCc-------CCCCCEECCCCEEecCEECC-CCEEc-ceecceEEcCCCEECCCC
Confidence 65 22221000000111100 0000 00000111122233444444 34443 357799999999999999
Q ss_pred EEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCee
Q 002861 223 LIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC 267 (873)
Q Consensus 223 ~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~ 267 (873)
.|++|+|++++.||++|.|.+++|.++ +.|++++.
T Consensus 322 ~i~~svi~~~~~i~~~~~i~~~ii~~~----------~~i~~~~~ 356 (380)
T PRK05293 322 VVKDSVIMPGAKIGENVVIERAIIGEN----------AVIGDGVI 356 (380)
T ss_pred EEECCEEeCCCEECCCeEEeEEEECCC----------CEECCCCE
Confidence 999999999999999999999999887 88888864
No 59
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=99.45 E-value=5.6e-11 Score=122.24 Aligned_cols=199 Identities=16% Similarity=0.111 Sum_probs=124.1
Q ss_pred CCCCChHHHHHHHHH--HHHHHHhCCCCCH-HHHHHHHHHHHHH--cCCCChhhhhHhhcccCeeEEecCCCCccee-EE
Q 002861 644 GSGLGTSSILAAAVV--KALLQITDGDQSN-ENVARLVLLLEQL--MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRL-QV 717 (873)
Q Consensus 644 GsGLGSSSAlavA~l--~Al~~~~g~~ls~-~eL~~la~~~E~~--~g~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~-~v 717 (873)
..||||||++++.++ ..+....+.+++. .+|.++|+.+--. -|.|+|. |+++++||++.+-++.|+.-.++ ++
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGf-DiaaA~fGsiiyrRF~p~li~~l~qi 185 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGF-DIAAAIFGSIIYRRFEPGLIPKLRQI 185 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccc-hhhHhhhcceEEeecCcchhhhhHhh
Confidence 589999999999998 3344435666665 7888888777643 3568887 89999999999988766632111 22
Q ss_pred EeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 002861 718 IPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAW 797 (873)
Q Consensus 718 ~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~~~lg~lm~~~~ 797 (873)
..+.+. ++++++.+++....|..+++++.+......++......++...+..+. +. .+++.......-.
T Consensus 186 g~~nfg-------~y~LmmGd~a~gSeTvglV~kv~~w~ns~~peelkc~de~nsrvl~l~---~~-sLdE~~s~~~~ir 254 (337)
T COG3890 186 GAVNFG-------DYYLMMGDQAIGSETVGLVCKVNKWRNSILPEELKCNDEMNSRVLNLI---KL-SLDESNSKSKAIR 254 (337)
T ss_pred Cccccc-------CeeeeecccccCccchHHHHHHHHHhhcCChHHHHhHHHHHHHHHHHH---hh-hHHHHHHHHHHHH
Confidence 233332 578999999999999999999866544443332223333333332211 11 3333222222112
Q ss_pred HHHhhhCC----CCChHHHHHHHHHHcc--CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhc
Q 002861 798 RLHQELDP----HCSNEFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD 857 (873)
Q Consensus 798 ~~~~~l~~----~vs~p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~ 857 (873)
..+++..+ -+.++....++..+.+ |+++.-+.|||+|+.++++.++. .++++.|...
T Consensus 255 rslrritee~~adiep~kqt~~Ld~i~~l~gvl~~lipgaGggdaif~l~~~~---~e~re~w~~~ 317 (337)
T COG3890 255 RSLRRITEEGLADIEPIKQTAALDSIFDLLGVLCDLIPGAGGGDAIFLLYRPN---IEAREAWLSK 317 (337)
T ss_pred HHHHHHHHHhccccccchhhhhhhhHHhccCceEeecccCCCCceEEEEeccc---HHHHHHHHhC
Confidence 22222211 1345555555444443 99999999999999999999863 3555577665
No 60
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.40 E-value=1.5e-10 Score=120.73 Aligned_cols=221 Identities=17% Similarity=0.154 Sum_probs=147.0
Q ss_pred cCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChhhhhHhhcccCeeEEecCC-
Q 002861 631 MGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFP- 709 (873)
Q Consensus 631 ~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~- 709 (873)
.|++|.|.+.+|...||||.+.++.|+..|+++++|+.++-+|||..+.+. .-+|+. .++.-+||+..--...
T Consensus 70 ~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgRG-----~tSgiG-v~afe~GGFIVDGGh~~ 143 (312)
T COG1907 70 EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGRG-----GTSGIG-VYAFEYGGFIVDGGHSF 143 (312)
T ss_pred CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHccC-----Ccccee-EEEEEECCEEEECCccc
Confidence 689999999999999999999999999999999999999999998765432 123332 5677789987532211
Q ss_pred ----CCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhcc
Q 002861 710 ----GIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQ-VLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNC 784 (873)
Q Consensus 710 ----~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~-~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~g 784 (873)
..+. ..+-...+|. +|.|+|+-+..+|...+ --.++..++..-+.+....+.++ ...++..|+.++
T Consensus 144 ~f~ps~~s-P~I~R~dfPe------dW~~VlaIP~~~rg~~~~~E~~if~~~~p~p~~~~~~ls~~--vLm~mmPavvE~ 214 (312)
T COG1907 144 GFLPSSAS-PLIFRLDFPE------DWRFVLAIPEVERGVSGRREVDIFKKYCPVPLEEVGELSHR--VLMKMMPAVVER 214 (312)
T ss_pred CcccCCCC-ceeeeecCCC------ceEEEEEecCCCccccchHHHHHHHhcCCCCHHHHHHHHHH--HHHHHhHHHHhh
Confidence 1111 1122334443 58999999887652211 11111122222233322223322 356788999999
Q ss_pred CHHHHHHHHHHHHHHH----hhhCCCCChHHHHHHHHHHccCCceEEecCCCccceeEEEeCCcch---HHHHHHHHHhc
Q 002861 785 DVDELGKIMLEAWRLH----QELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAES---ATELRRMLEKD 857 (873)
Q Consensus 785 d~~~lg~lm~~~~~~~----~~l~~~vs~p~l~~l~~~a~~ga~G~klsGAGgGG~v~~l~~~~~~---a~~i~~~L~~~ 857 (873)
|++.||+.+++.++.. +.......++.+.++++.+.+.++++-+|- ||.++|+++++... +.++++.+.++
T Consensus 215 Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~a~~agqSS--wGPtvY~i~d~~~~~~~~~~~~~~~~~~ 292 (312)
T COG1907 215 DIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEAAYGAGQSS--WGPTVYGIVDSREAGSVVRKLIDILLEE 292 (312)
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHhcccccccc--cCCEEEEeccccccchHHHHHHHHHHhc
Confidence 9999999999998865 222223567999999999988777666654 55599999997542 35566666665
Q ss_pred CCCceEEEEEee
Q 002861 858 SNFNSEVYNWNI 869 (873)
Q Consensus 858 ~~~~v~v~~~~i 869 (873)
+ ...+|+.-+.
T Consensus 293 g-~~gev~vT~~ 303 (312)
T COG1907 293 G-IGGEVFVTKA 303 (312)
T ss_pred C-CceEEEEecc
Confidence 3 5666665543
No 61
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.39 E-value=1e-12 Score=111.06 Aligned_cols=67 Identities=36% Similarity=0.506 Sum_probs=62.3
Q ss_pred EEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChhhhhHhhcccC
Q 002861 634 QIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPG 701 (873)
Q Consensus 634 ~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG 701 (873)
+|++.++||.++|||||||+++|++.+++++++.+++++++++++..+|+..+.++|+|| ++++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~~g~d~-~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKPSGIDD-AASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSSHSHHH-HHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCCChhhH-HHHHhCc
Confidence 588999999999999999999999999999999999999999999999986788877655 8899997
No 62
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.27 E-value=1.2e-10 Score=118.79 Aligned_cols=198 Identities=17% Similarity=0.173 Sum_probs=144.2
Q ss_pred cccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChhhhhHhhcccCeeEEe
Q 002861 627 LIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTS 706 (873)
Q Consensus 627 ~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~ 706 (873)
.+...|+.+.+.|+||.|.||+||+|..+|++.|+.+++|.+++..+|++++..+|.. | +.+|.+.+.++
T Consensus 78 ~~~~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEPt--------D--siiF~~~tlFd 147 (293)
T COG4542 78 KLINTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEPT--------D--SIIFDKATLFD 147 (293)
T ss_pred ceecCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcCCc--------c--ceecccceeeh
Confidence 4456789999999999999999999999999999999999999999999999999952 2 24677788777
Q ss_pred cCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCH
Q 002861 707 SFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDV 786 (873)
Q Consensus 707 ~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~gd~ 786 (873)
...|..++ -+... +...++++..+.+..|...-+.-..+ .......++.++.+...+|+..||.
T Consensus 148 ~r~g~~~~----~~g~~------PpL~ilv~e~~~~v~T~~y~q~~r~e------~~~~~~~e~~~l~~~v~~A~~~~~~ 211 (293)
T COG4542 148 QREGRVIE----FLGEM------PPLHILVFEGKGTVETVDYNQPPRGE------KLLAPLAELGNLINLVEKALKVGDP 211 (293)
T ss_pred hccchHHH----hcCCC------CceEEEEEcCCCceeeeeccCCchhh------hhhhhHHHHHHHHHHHHHHHccCCH
Confidence 66664221 12211 24577777777777665543210001 1122345555666778899999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcc---hHHHHHHHHHh
Q 002861 787 DELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE---SATELRRMLEK 856 (873)
Q Consensus 787 ~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~---~a~~i~~~L~~ 856 (873)
..+|++-+-+.-.+++.- ..|.+++|.+++.+ +++|.-.+.+|. ++++.-|.. +..+++-.+.+
T Consensus 212 ~~lG~AAT~SAv~~Q~~L---PK~~~~~lL~l~e~~~~~Gv~VAHSGt---mlGli~D~~~~~d~~k~~~~l~r 279 (293)
T COG4542 212 KLLGEAATLSAVKNQDRL---PKPGLNELLRLVEETCAIGVIVAHSGT---MLGLIYDRKYALDPRKLRVVLAR 279 (293)
T ss_pred HHHHHHHHHHHHhhcccc---CchhHHHHHHHHHHhcccceEEeccCc---eEEeeeccccccchHHHHHHHHH
Confidence 999999999987777763 57999999999988 888988888875 777665432 23344444443
No 63
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.26 E-value=3.1e-11 Score=136.72 Aligned_cols=214 Identities=14% Similarity=0.136 Sum_probs=130.1
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccce-EEEeCCCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHG-VIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL 75 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hG-V~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~ 75 (873)
|.||+++.+|+..|+. .++++|++..+++.+..+.+| |+..|+++ +|..|.+|+..+
T Consensus 120 lnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g---------~v~~~~~~~~~~--------- 181 (369)
T TIGR02092 120 LNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESG---------KVKSIGQNLNPE--------- 181 (369)
T ss_pred ECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCC---------CEEeccccCCCC---------
Confidence 5799999999999988 579999999998876777785 55667665 577764433221
Q ss_pred CCCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhc-------ccccccccccCCCc--hhHH
Q 002861 76 DDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAW-------VPAKHDWLMLRPLG--KELV 146 (873)
Q Consensus 76 ~~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~-------~~~~~~Y~~~~pvg--d~~~ 146 (873)
....+.+|+|+|+.+.+.+++.... + ..+.+.+.|++..+ +-....||.| +| +.|+
T Consensus 182 --~~~~~~~Giyi~~~~~l~~~l~~~~----------~-~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~d--Igt~~~l~ 246 (369)
T TIGR02092 182 --EEENISLDIYIVSTDLLIELLYECI----------Q-RGKLTSLEELIRENLKELNINAYEYTGYLAN--INSVKSYY 246 (369)
T ss_pred --CcceeeeeEEEEEHHHHHHHHHHHh----------h-cCccccHHHHHHHHhccCcEEEEecCCceeE--cCCHHHHH
Confidence 1124679999999998877775321 0 01112223443332 1133579988 76 5666
Q ss_pred hh----hhcCcceEEE-ecCceeE-EecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeCC
Q 002861 147 SK----LGKQRMFSYC-AYELLFL-HFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGE 220 (873)
Q Consensus 147 ~~----l~~~~i~~~~-~p~a~F~-h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~ 220 (873)
.+ |......... ..++..+ .+.. . ....++....+.++.+.. +|.+. +.|.+|+|+++|+|++
T Consensus 247 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~-~p~~i~~~~~i~~~~Ig~-~~~i~-~~v~~s~i~~~~~I~~ 315 (369)
T TIGR02092 247 KANMDLLDPQNFQSLFYSSQGPIYTKVKD--------E-PPTYYAENSKVENSLVAN-GCIIE-GKVENSILSRGVHVGK 315 (369)
T ss_pred HHHHHHhCCcchhhhcCCCCCceeeccCC--------C-CCcEEcCCCEEEEeEEcC-CCEEe-eEEeCCEECCCCEECC
Confidence 55 2221100000 0111111 0000 0 000112222234455544 44443 4677889999999999
Q ss_pred CcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 221 DSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 221 ~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
+|.|++|+|++++.||++|.|.++++.++ ++|.++..+
T Consensus 316 ~~~i~~sii~~~~~I~~~~~i~~~ii~~~----------~~v~~~~~~ 353 (369)
T TIGR02092 316 DALIKNCIIMQRTVIGEGAHLENVIIDKD----------VVIEPNVKI 353 (369)
T ss_pred CCEEEeeEEeCCCEECCCCEEEEEEECCC----------CEECCCCEe
Confidence 99999999999999999999999888776 777777643
No 64
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=99.25 E-value=5.9e-09 Score=108.56 Aligned_cols=203 Identities=21% Similarity=0.202 Sum_probs=141.3
Q ss_pred ccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChhhhhHhhcccCeeEEecCC
Q 002861 630 SMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFP 709 (873)
Q Consensus 630 ~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~ 709 (873)
..++++.+++++|.|+|+|.|++.+.+.+.|++..++.. .++.+++|+.+|-..+| |+.|+++..+|| ..++..+
T Consensus 72 ~~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~gt--GLGDVvAq~~GG-lViR~~p 146 (283)
T COG1829 72 PDGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVENGT--GLGDVVAQYTGG-LVIRVKP 146 (283)
T ss_pred ccCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcCC--CchHHHHHhcCc-EEEEecC
Confidence 345889999999999999999999999999999998876 88899999999976654 667999999999 5567788
Q ss_pred CCcceeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhc-cCHHH
Q 002861 710 GIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMN-CDVDE 788 (873)
Q Consensus 710 ~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~AL~~-gd~~~ 788 (873)
|.|....+..++.++ .+ ++..+-..-+|++++..-. .+++++...++...|.+ -+++
T Consensus 147 G~Pg~~~vd~Ip~~~-------~~-V~~~~~g~l~T~~vi~~~~-------------~~~i~~~g~~~l~ellk~Ptle- 204 (283)
T COG1829 147 GGPGEGEVDRIPVPG-------LR-VITISLGELSTKSVITDEV-------------VRKINEAGKRALAELLKNPTLE- 204 (283)
T ss_pred CCCCeEEEEEeecCC-------ce-EEEEEcccccHHHhhhhHH-------------HHHHHHHHHHHHHHHHhCCCHH-
Confidence 888767778877653 23 4445555678888876522 23444455555555544 4454
Q ss_pred HHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcchHHHHHHHHHhcCCCceEEEEE
Q 002861 789 LGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNW 867 (873)
Q Consensus 789 lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~~~~~~~v~v~~~ 867 (873)
++|+.+.+--+.+. .++.++...++.... +.+|+.+.= .|-+++++.+..+..+.+.+.+.+. +++..+.|
T Consensus 205 --~f~~~a~~FA~~~G--l~~~~v~~~~~~~~~~g~l~as~~m--lg~tVFa~~~~~e~~~~~~~~~~~~--~~~~l~~~ 276 (283)
T COG1829 205 --NFMEEAREFARRTG--LMSEEVKEAAEALHSVGGLGASMAM--LGVTVFALSPEAERLAEVGKDLGAP--YDIRLIYG 276 (283)
T ss_pred --HHHHHHHHHHHHhC--cCHHHHHHHHHHhhhcCchhHhHHh--hCcEEEEeccccchHHHHHHhhccc--cceeEEec
Confidence 45666666555653 666777777777664 656554433 3448999985444555555555442 55555544
No 65
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.15 E-value=1.1e-10 Score=103.20 Aligned_cols=81 Identities=27% Similarity=0.316 Sum_probs=69.3
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc-CCceEEecCCCccceeEEEeCCcchHHHHHHHHH
Q 002861 777 GRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLE 855 (873)
Q Consensus 777 ~~~AL~~gd~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~-ga~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L~ 855 (873)
|++||.++|++.++++|+++|...........+|+++.+++.+++ |++++++||||+|||+++|+++++.++++++.|+
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQENEPENYREVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 578999999999999999998742211223678999999999987 7899999999999999999987788999999998
Q ss_pred hc
Q 002861 856 KD 857 (873)
Q Consensus 856 ~~ 857 (873)
+.
T Consensus 81 ~~ 82 (85)
T PF08544_consen 81 EH 82 (85)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 66
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=99.06 E-value=4.5e-08 Score=106.02 Aligned_cols=225 Identities=19% Similarity=0.207 Sum_probs=145.3
Q ss_pred HHHHHHHHHhhhhhhccccccCEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCCh
Q 002861 611 RLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGG 690 (873)
Q Consensus 611 ~~~kaal~~~~~~~~~~~~~~G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G 690 (873)
.-++.++..+. .++....++.|...++.|.+.|||||||.++|+.+|++++++.++|..+|.++|.. |.+++
T Consensus 72 ~k~~~~ld~~R---~~~~~~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~-----gSGSa 143 (329)
T COG3407 72 EKARRVLDRFR---KEYGISFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARL-----GSGSA 143 (329)
T ss_pred HHHHHHHHHHH---HhhcccceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHH-----hccch
Confidence 34556665543 22334567889999999999999999999999999999999999999999999864 34443
Q ss_pred hhhhHhhcccCeeEEecCCCCcc-eeEEEeecCChhhhhhcCcEEEEEEeCCcc-hHHHHHHHHHHHHhhcCHHHHHHHH
Q 002861 691 WQDQIGGLYPGIKFTSSFPGIPL-RLQVIPLLASPQLILELQQRLLVVFTGQVR-LAHQVLQKVVTRYLQRDNLLISSIK 768 (873)
Q Consensus 691 ~~Dq~~~~~GG~~~~~~~~~~~~-~~~v~pl~~~~~~~~~~~~~lllv~tg~tr-~t~~~l~~v~~~~~~~~~~~~~~~~ 768 (873)
.-+++||+......+|... ...+.++..+++ +...++++.+..++ ++++..+.-+. .++-+...+.
T Consensus 144 ----~RS~~Gg~~~W~~~~g~~~~~~~~~~~~~~~e----~~~i~~~~~~~~k~vsS~~gm~~~~~----tS~~y~~w~~ 211 (329)
T COG3407 144 ----SRSIFGGFVLWEKGEGEDSAAEQLFRLDLWKE----LAMIVLVISPKKKKVSSREGMQLTAE----TSPFYDAWLE 211 (329)
T ss_pred ----hhhhcCCeeEeccCCCCccceeeeccccCccc----cceEEEEEccccCCCCchHHHHHHHH----cChHHHHHHH
Confidence 3689999977765543211 122344544432 34555555554433 34444333111 1233334455
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH-HHhhhCC---C--CChHHHHHHHHHH---cc-CCceEEecCCCccceeE
Q 002861 769 RLTELAKNGRDALMNCDVDELGKIMLEAWR-LHQELDP---H--CSNEFVDRLFAFA---DP-YCCGYKLVGAGGGGFAL 838 (873)
Q Consensus 769 ~i~~~~~~~~~AL~~gd~~~lg~lm~~~~~-~~~~l~~---~--vs~p~l~~l~~~a---~~-ga~G~klsGAGgGG~v~ 838 (873)
...+..+++..+++++|++.++++..++-. .+..+.. + .-+++.-++++.+ ++ |...+-..-||+ .++
T Consensus 212 ~~~~~~~~m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~g~~~~fT~DaGP--nV~ 289 (329)
T COG3407 212 HSEEDLEEMKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKEGNAVYFTMDAGP--NVK 289 (329)
T ss_pred HHHHhHHHHHHHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhcCCceEEEEcCCC--ceE
Confidence 555556789999999999999999776633 2333321 1 1223444444444 33 445567778888 899
Q ss_pred EEeCCcchHHHHHHHHHhcC
Q 002861 839 LLAKDAESATELRRMLEKDS 858 (873)
Q Consensus 839 ~l~~~~~~a~~i~~~L~~~~ 858 (873)
.++.+ +..+++.+.+.+.+
T Consensus 290 v~~~~-~~l~~~~~~~~~~~ 308 (329)
T COG3407 290 VITLE-ENLIDLLEILKTLE 308 (329)
T ss_pred EEEec-ccHHHHHHHHhhcc
Confidence 99986 66777888777653
No 67
>PLN02407 diphosphomevalonate decarboxylase
Probab=99.04 E-value=2.5e-08 Score=108.94 Aligned_cols=207 Identities=18% Similarity=0.120 Sum_probs=124.3
Q ss_pred EEEEee--ccCCCCCCChHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHcCCCChhhhhHhhcccCeeEEecCCC
Q 002861 634 QIRTWA--NVPRGSGLGTSSILAAAVVKALLQITDGDQS-NENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPG 710 (873)
Q Consensus 634 ~i~i~s--~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls-~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~~~ 710 (873)
.++|.| ++|.++|||||||..+|++.|++.+++.+++ ..+|..+|. .| +|. |. .++|||+..+.....
T Consensus 105 ~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr-----~G--SGS-a~-rS~~Gg~v~w~~G~~ 175 (343)
T PLN02407 105 HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIAR-----QG--SGS-AC-RSLYGGFVKWNMGKK 175 (343)
T ss_pred cEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHh-----cc--ChH-HH-HHhhCCeEEecCCCC
Confidence 455555 9999999999999999999999999999999 999999987 33 442 33 499999998875411
Q ss_pred -CcceeEEEeecCChhhhhhcCcEEEEEEeCC--cchHHHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHHHHHhccCH
Q 002861 711 -IPLRLQVIPLLASPQLILELQQRLLVVFTGQ--VRLAHQVLQKVVTRYLQRDNLLISSIKR-LTELAKNGRDALMNCDV 786 (873)
Q Consensus 711 -~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~--tr~t~~~l~~v~~~~~~~~~~~~~~~~~-i~~~~~~~~~AL~~gd~ 786 (873)
....-..+|+.... .-.++..-+++++.+. ..+|..+-.-+ . .++.+...+++ ..+...++.+||+++|+
T Consensus 176 ~d~~ds~A~~i~~~~-~~~dl~~~i~vv~~~~K~vsSt~GM~~tv-~----TSp~~~~w~~~~~~~~~~~~~~Ai~~~Df 249 (343)
T PLN02407 176 EDGSDSIAVQLADEK-HWDDLVIIIAVVSSRQKETSSTSGMRESV-E----TSPLLQHRAKEVVPKRILQMEEAIKNRDF 249 (343)
T ss_pred CCCCceeEEECCCcc-CCccceEEEEEEcCCcCCCCchHHHHHhh-h----cChhHHHHHHhhhHHHHHHHHHHHHhcCH
Confidence 11112234543211 1011333444455443 22333332211 1 12222233333 34455678999999999
Q ss_pred HHHHHHHHHHHHHHhh-hC---CCC--ChHHHHHHH---HHHcc--CC-ceEEecCCCccceeEEEeCCcchHHHHHHHH
Q 002861 787 DELGKIMLEAWRLHQE-LD---PHC--SNEFVDRLF---AFADP--YC-CGYKLVGAGGGGFALLLAKDAESATELRRML 854 (873)
Q Consensus 787 ~~lg~lm~~~~~~~~~-l~---~~v--s~p~l~~l~---~~a~~--ga-~G~klsGAGgGG~v~~l~~~~~~a~~i~~~L 854 (873)
+.||++...+...+.. +. |.+ .+|.--.++ ...++ |. ..+--.-||+ .+..++.+.+..++|.+.+
T Consensus 250 ~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT~DAGP--Nv~vl~~~~~~~~~v~~~~ 327 (343)
T PLN02407 250 ASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGP--NAVLIALNRKVAAQLLQRL 327 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEEecCCC--CEEEEEChhhhHHHHHHHH
Confidence 9999997766443222 21 111 123333333 33333 43 5677789999 8888887643333488766
Q ss_pred Hhc
Q 002861 855 EKD 857 (873)
Q Consensus 855 ~~~ 857 (873)
.+.
T Consensus 328 ~~~ 330 (343)
T PLN02407 328 LYY 330 (343)
T ss_pred HHh
Confidence 665
No 68
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.00 E-value=2.2e-09 Score=120.94 Aligned_cols=181 Identities=18% Similarity=0.167 Sum_probs=109.9
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
+.||+++.+|+..|+. +++++|+++.+.+ ....+|+..+|+++ +|.+|.+||..+.
T Consensus 104 ~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~--~~~~~g~~~~~~~~---------~v~~~~ekp~~~~--------- 163 (353)
T TIGR01208 104 YLGDNLIQDGISRFVKSFEEKDYDALILLTKVR--DPTAFGVAVLEDGK---------RILKLVEKPKEPP--------- 163 (353)
T ss_pred EECCeecCccHHHHHHHHHhcCCCcEEEEEECC--ChhhCeEEEEcCCC---------cEEEEEECCCCCC---------
Confidence 3589999999988876 6789999988764 35679999887555 7999999997542
Q ss_pred CCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhcc-------c-ccccccccCCCc--hhHH
Q 002861 77 DGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWV-------P-AKHDWLMLRPLG--KELV 146 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~~-------~-~~~~Y~~~~pvg--d~~~ 146 (873)
....++|+|+|+.. +.+.+.... + . ...+++ ..|++..+. . .-+.||.+ +| +.|+
T Consensus 164 --~~~~~~Giy~~~~~-l~~~l~~~~-~-----~---~~~e~~-l~d~l~~l~~~g~~v~~~~~~g~w~d--igt~~dl~ 228 (353)
T TIGR01208 164 --SNLAVVGLYMFRPL-IFEAIKNIK-P-----S---WRGELE-ITDAIQWLIEKGYKVGGSKVTGWWKD--TGKPEDLL 228 (353)
T ss_pred --ccceEEEEEEECHH-HHHHHHhcC-C-----C---CCCcEE-HHHHHHHHHHcCCeEEEEEeCcEEEe--CCCHHHHH
Confidence 34789999999984 444553211 0 0 011222 234444331 1 22468887 65 5566
Q ss_pred hh----hhcCcceEEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeCCCc
Q 002861 147 SK----LGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDS 222 (873)
Q Consensus 147 ~~----l~~~~i~~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s 222 (873)
++ +.. +.. .+. + ++ + .+.+.++..+..++.|.+|+|.+.|.|++++
T Consensus 229 ~a~~~ll~~--~~~-~~~-~--i~--~----------------------~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~ 278 (353)
T TIGR01208 229 DANRLILDE--VER-EVQ-G--VD--D----------------------ESKIRGRVVVGEGAKIVNSVIRGPAVIGEDC 278 (353)
T ss_pred HHHHHHHhh--ccc-ccC-C--cC--C----------------------CCEEcCCEEECCCCEEeCCEEECCcEECCCC
Confidence 54 221 100 000 0 00 0 0000112234456666677777777778888
Q ss_pred EEEEceeCCCeEECCCcEEeCcCC
Q 002861 223 LIYDSNISSGIQIGSLSIVVGTNF 246 (873)
Q Consensus 223 ~Ve~s~l~~~v~IG~~~iisg~~i 246 (873)
.|++|+|.+++.||++|+|.++.+
T Consensus 279 ~I~~~~i~~~~~Ig~~~~i~~~~i 302 (353)
T TIGR01208 279 IIENSYIGPYTSIGEGVVIRDAEV 302 (353)
T ss_pred EEcCcEECCCCEECCCCEEeeeEE
Confidence 887777777777777777766555
No 69
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=98.95 E-value=2.7e-07 Score=97.38 Aligned_cols=206 Identities=18% Similarity=0.176 Sum_probs=120.8
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCC----------CCC--HHH----HHHHHHHHHHHcC-CCChhhhhHhhcccCeeEE
Q 002861 643 RGSGLGTSSILAAAVVKALLQITDG----------DQS--NEN----VARLVLLLEQLMG-TGGGWQDQIGGLYPGIKFT 705 (873)
Q Consensus 643 ~GsGLGSSSAlavA~l~Al~~~~g~----------~ls--~~e----L~~la~~~E~~~g-~~~G~~Dq~~~~~GG~~~~ 705 (873)
...||||||+++.++++++...+|. +++ ..+ |++.|+..- .| .|+|+ |+.+++||...+.
T Consensus 151 ~KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~A--QGKvGSGF-DV~aA~yGS~rYr 227 (459)
T KOG4519|consen 151 AKTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLA--QGKVGSGF-DVSAAVYGSQRYR 227 (459)
T ss_pred cccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHh--cCCccCCc-ceehhhccceeee
Confidence 3689999999999999888877753 122 222 333333332 34 36776 8999999999988
Q ss_pred ecCCCC----cc--------------------eeEEEeecCChhhhhhcCcEEEEEEeCCcchHHHHHHHHHHHHhhcCH
Q 002861 706 SSFPGI----PL--------------------RLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDN 761 (873)
Q Consensus 706 ~~~~~~----~~--------------------~~~v~pl~~~~~~~~~~~~~lllv~tg~tr~t~~~l~~v~~~~~~~~~ 761 (873)
++.|.. |+ ...+....+| ..+++++.+-....+|..++++|.+-...+++
T Consensus 228 RF~P~lis~lp~~i~~~~~~~el~~~V~k~~W~~~~~~f~LP------~~~~L~mGd~~gGSsTp~mV~kVk~Wq~s~~p 301 (459)
T KOG4519|consen 228 RFSPELISFLPQVIVTGLPLNELIGTVLKGKWDNKRTEFSLP------PLMNLFMGDGSGGSSTPSMVGKVKKWQMSDPP 301 (459)
T ss_pred eCCHHHHHHHHHHHhccChhHHHHHHhhhhhcccccccccCC------ceeeeeeecCCCCCCcHHHHHHHHHHhhcCCh
Confidence 864421 10 0001112222 24577777655667888999887543333323
Q ss_pred HHHHHHHHHHHH---------------------HHHHHHHHhccC--------HHHHHHHHHHHHHHHhhhCC----CCC
Q 002861 762 LLISSIKRLTEL---------------------AKNGRDALMNCD--------VDELGKIMLEAWRLHQELDP----HCS 808 (873)
Q Consensus 762 ~~~~~~~~i~~~---------------------~~~~~~AL~~gd--------~~~lg~lm~~~~~~~~~l~~----~vs 808 (873)
+...+...+... ..+.++.|...+ +.++.+.|..-..++|++.. .++
T Consensus 302 e~~k~~~~lddansr~~~~l~kl~~l~~~h~d~~~~v~eSl~~~~~~~~~~~e~~E~r~a~~~IRr~~r~it~ea~vdIE 381 (459)
T KOG4519|consen 302 EARKNWQNLDDANSRLETKLNKLSKLAKDHWDVYLRVIESLSVLTINEAIIKELLEAREAMLRIRRLMRQITEEASVDIE 381 (459)
T ss_pred hHhhhhcchhhHHHHHHhhhhhhhHhhhhchhHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 322222211111 122223333221 23444455555555555542 266
Q ss_pred hHHHHHHHHHHcc--CCceEEecCCCccceeEEEeCCc-chHHHHHHHHHhc
Q 002861 809 NEFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDA-ESATELRRMLEKD 857 (873)
Q Consensus 809 ~p~l~~l~~~a~~--ga~G~klsGAGgGG~v~~l~~~~-~~a~~i~~~L~~~ 857 (873)
++....|++-+.. |++++-+.||||=+.+++++... +..+++.+.|+..
T Consensus 382 P~~QT~lLD~~~sl~GVl~~gvPGAGGfDAif~it~~dvd~~~~~~~~w~~~ 433 (459)
T KOG4519|consen 382 PESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWSSH 433 (459)
T ss_pred chhhhhHhhhhhcccceEEecccCCCCcceEEEEeecchhHHHHHHhhhccc
Confidence 7777788887764 99999999999999999998752 2345666666654
No 70
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=4.7e-09 Score=118.05 Aligned_cols=204 Identities=19% Similarity=0.196 Sum_probs=119.7
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
|.||++--+|...|+. +++..|++..+++-. +.|||..++.+. . +|.+|.+||.. + .
T Consensus 105 ~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~--~~~Gvv~~~~~~--~------~v~~f~ekp~~-~--------~ 165 (358)
T COG1208 105 LNGDVLTDLDLSELLEFHKKKGALATIALTRVLDP--SEFGVVETDDGD--G------RVVEFREKPGP-E--------E 165 (358)
T ss_pred EECCeeeccCHHHHHHHHHhccCccEEEEEecCCC--CcCceEEecCCC--c------eEEEEEecCCC-C--------C
Confidence 5799999999888887 556677777666555 899999998542 1 79999999965 2 1
Q ss_pred CCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhcccccccccccCCCc--hhHHhh---hhc
Q 002861 77 DGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLMLRPLG--KELVSK---LGK 151 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~~~~~~~Y~~~~pvg--d~~~~~---l~~ 151 (873)
+...++.+|+|+|+++++. ++. .....+|..+++ |..+..-. .++++ ..+.||.| +| +.|.++ +..
T Consensus 166 ~~~~~in~Giyi~~~~v~~-~i~-~~~~~~~~~~~~--~~l~~~~~-~v~~~--~~~g~W~d--ig~p~d~~~a~~~~~~ 236 (358)
T COG1208 166 PPSNLINAGIYIFDPEVFD-YIE-KGERFDFEEELL--PALAAKGE-DVYGY--VFEGYWLD--IGTPEDLLEANELLLR 236 (358)
T ss_pred CCCceEEeEEEEECHHHhh-hcc-cCCcccchhhHH--HHHHhCCC-cEEEE--EeCCeEEe--CCCHHHHHHHHHHHHh
Confidence 2456899999999999887 221 112233333344 22221100 01111 23449999 76 455554 111
Q ss_pred -CcceEEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEE-eeeecCCceeCCCcEEEEcee
Q 002861 152 -QRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVL-SSKIAHGVSIGEDSLIYDSNI 229 (873)
Q Consensus 152 -~~i~~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~-~Svl~~~v~v~~~s~Ve~s~l 229 (873)
..-. +.+. ....-.. ..+ .. ..-+.....++.|..++.|. +++++++|.|+.++.|.+|+|
T Consensus 237 ~~~~~----~~~~-~~~~~~~------~~~-~~-----i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii 299 (358)
T COG1208 237 GDGKS----PLGP-IEEPVVI------IRS-AY-----IIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSII 299 (358)
T ss_pred ccccc----cccc-ccccccc------ccc-ce-----EeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEE
Confidence 1000 1000 0000000 000 00 01111222222233333332 378999999999999999999
Q ss_pred CCCeEECCCcEEeCcCCCCC
Q 002861 230 SSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 230 ~~~v~IG~~~iisg~~i~~~ 249 (873)
++++.||+++.|.+++|..+
T Consensus 300 ~~~~~i~~~~~i~~sIi~~~ 319 (358)
T COG1208 300 MDNVVIGHGSYIGDSIIGEN 319 (358)
T ss_pred EcCCEECCCCEEeeeEEcCC
Confidence 99999999999999999877
No 71
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=98.79 E-value=7.9e-09 Score=82.00 Aligned_cols=38 Identities=29% Similarity=0.449 Sum_probs=31.6
Q ss_pred EEEEeceEEEeecccccCCCcccCCCCeEEEeeeecccccceeEEEEE
Q 002861 529 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIET 576 (873)
Q Consensus 529 v~v~aP~Rv~L~G~~tD~~~~~~~~gG~Vl~~AI~l~~~~pi~~~v~~ 576 (873)
+.++||||++|+|||+||+ ||.|+++||++++. +.+++
T Consensus 14 ~~~~APGRvnliGeHtDy~------gG~Vl~~Ai~~~~~----~a~~~ 51 (52)
T PF10509_consen 14 VVASAPGRVNLIGEHTDYN------GGFVLPAAIDLRTY----VAVSP 51 (52)
T ss_dssp EEEEEEEEEEEE-TT-GGG------T-EEEEEEEEEEEE----EEEEE
T ss_pred EEEECCceEEecCcccccC------CCeEEEEEeeccEE----EEEEc
Confidence 7899999999999999997 99999999999987 55655
No 72
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.75 E-value=3e-08 Score=115.63 Aligned_cols=201 Identities=15% Similarity=0.242 Sum_probs=104.4
Q ss_pred CCCe--eeccCCCcCcC--CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCC
Q 002861 2 TGDV--LPCFDASTMIL--PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDD 77 (873)
Q Consensus 2 ~gD~--i~~~d~~~~~~--~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~ 77 (873)
.||+ +...++..|.. .+.++++.+.++ +..+.|||+.. +++ +|.+|.|||...+- ++
T Consensus 103 ~gD~P~i~~~~i~~l~~~~~~~~~~i~~~~~--~~~~~yG~v~~-~~g---------~V~~~~EKp~~~~~-------~~ 163 (456)
T PRK09451 103 YGDVPLISVETLQRLRDAKPQGGIGLLTVKL--DNPTGYGRITR-ENG---------KVVGIVEQKDATDE-------QR 163 (456)
T ss_pred eCCcccCCHHHHHHHHHHhhcCCEEEEEEEc--CCCCCceEEEe-cCC---------eEEEEEECCCCChH-------Hh
Confidence 4776 45566666654 345566666654 45578999754 455 79999999964321 11
Q ss_pred CccceeeceeeecchHHHHHHhhhcC----Cchhhhhhhcc----ccchhhhH--HHHhhcccccccccccCCCc--hhH
Q 002861 78 GRALLDTGIIAVRGKAWEELVMLSCS----CPPMVSELLKS----GKEMSLYE--DLVAAWVPAKHDWLMLRPLG--KEL 145 (873)
Q Consensus 78 ~~~l~~~Gi~~f~~~~~~~ll~~~~~----~~d~g~d~~~~----~~~~~~y~--df~~~~~~~~~~Y~~~~pvg--d~~ 145 (873)
...++++|+|+|+.+.+.+++..... ..++..|+++. ...+..|. +++.. ....+|.+ .+ ++|
T Consensus 164 ~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~---~G~~~~~d--i~~~~~y 238 (456)
T PRK09451 164 QIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEV---EGVNNRLQ--LARLERV 238 (456)
T ss_pred hccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHh---cCCCCHHH--HHHHHHH
Confidence 22478999999999999887763211 11222333311 00111110 00000 00012333 33 456
Q ss_pred HhhhhcCcce---EEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEE-eeeecCCceeCCC
Q 002861 146 VSKLGKQRMF---SYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVL-SSKIAHGVSIGED 221 (873)
Q Consensus 146 ~~~l~~~~i~---~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~-~Svl~~~v~v~~~ 221 (873)
+++-...++. ...++|..+...|+.. . ..++.|..++.|. +++|+++|.|+++
T Consensus 239 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~------i-----------------g~~~~I~~~~~i~~~v~ig~~~~I~~~ 295 (456)
T PRK09451 239 YQAEQAEKLLLAGVMLRDPARFDLRGTLT------H-----------------GRDVEIDTNVIIEGNVTLGNRVKIGAG 295 (456)
T ss_pred HHHHHHHHHHHcCCEEeCCCEEEECCcEE------E-----------------CCCCEEcCCeEEecCcEECCCCEECCC
Confidence 6531100000 1223555443322200 0 0011122233333 3567777778777
Q ss_pred cEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861 222 SLIYDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 222 s~Ve~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
++|++|+|++++.|+++|.|.++++.++
T Consensus 296 ~~i~~~~ig~~~~I~~~~~i~~~~ig~~ 323 (456)
T PRK09451 296 CVLKNCVIGDDCEISPYSVVEDANLGAA 323 (456)
T ss_pred ceEecCEEcCCCEEcCCEEEeCCccCCC
Confidence 8777777788888888887777777665
No 73
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.63 E-value=5.4e-08 Score=114.07 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=53.0
Q ss_pred CCCe--eeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861 2 TGDV--LPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL 75 (873)
Q Consensus 2 ~gD~--i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~ 75 (873)
.||+ +...++..|+. +++++|++..+++ ..+.||+..+|+++ +|.+|.|||..++=.
T Consensus 106 ~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~--~~~~yG~v~~d~~g---------~v~~~~Ek~~~~~~~------ 168 (481)
T PRK14358 106 YGDTPLLRPDTLRALVADHRAQGSAMTILTGELP--DATGYGRIVRGADG---------AVERIVEQKDATDAE------ 168 (481)
T ss_pred eCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcC--CCCCceEEEECCCC---------CEEEEEECCCCChhH------
Confidence 5776 44555656554 6788999888876 45679999999887 799999999753200
Q ss_pred CCCccceeeceeeecchH
Q 002861 76 DDGRALLDTGIIAVRGKA 93 (873)
Q Consensus 76 ~~~~~l~~~Gi~~f~~~~ 93 (873)
. ..-++.+|+|+|+.+.
T Consensus 169 ~-~~~~~n~Giyi~~~~~ 185 (481)
T PRK14358 169 K-AIGEFNSGVYVFDARA 185 (481)
T ss_pred h-hCCeEEEEEEEEchHH
Confidence 0 1124789999999775
No 74
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.60 E-value=5.3e-08 Score=113.68 Aligned_cols=202 Identities=15% Similarity=0.152 Sum_probs=106.4
Q ss_pred CCCe--eeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861 2 TGDV--LPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL 75 (873)
Q Consensus 2 ~gD~--i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~ 75 (873)
.||+ +...++.+|+. .++++++...+++ ....+|+..+|+++ +|.+|.+||....-
T Consensus 103 ~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~--~~~~~g~v~~d~~g---------~v~~~~ek~~~~~~------- 164 (459)
T PRK14355 103 CGDVPLLRAETLQGMLAAHRATGAAVTVLTARLE--NPFGYGRIVRDADG---------RVLRIVEEKDATPE------- 164 (459)
T ss_pred ECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcC--CCCcCCEEEEcCCC---------CEEEEEEcCCCChh-------
Confidence 4776 44566666665 5678888877653 23579999988776 79999999843210
Q ss_pred CCCccceeeceeeecchHHHHHHhhhcCCchhhhhhhccccchhhhHHHHhhc---c----c-ccccc--cccCCCc--h
Q 002861 76 DDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAW---V----P-AKHDW--LMLRPLG--K 143 (873)
Q Consensus 76 ~~~~~l~~~Gi~~f~~~~~~~ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~---~----~-~~~~Y--~~~~pvg--d 143 (873)
++...++.+|+|+|+++.+.+++..- ... . ...+++ +.|++..+ + . ...+| |.+ ++ +
T Consensus 165 ~~~~~~~~~Giy~~~~~~l~~~l~~~-~~~-----~--~~~e~~-~~d~i~~l~~~g~~v~~~~~~~~~~~~~--i~~~~ 233 (459)
T PRK14355 165 ERSIREVNSGIYCVEAAFLFDAIGRL-GND-----N--AQGEYY-LTDIVAMAAAEGLRCLAFPVADPDEIMG--VNDRA 233 (459)
T ss_pred HhhccEEEEEEEEEeHHHHHHHHHHc-Ccc-----c--cCCcee-HHHHHHHHHHCCCeEEEEEcCCHHHhcC--CCCHH
Confidence 11234789999999998877766421 000 0 011111 12444333 1 0 12345 656 64 5
Q ss_pred hHHhhh---hcCcceEEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEE-eeeecCCceeC
Q 002861 144 ELVSKL---GKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVL-SSKIAHGVSIG 219 (873)
Q Consensus 144 ~~~~~l---~~~~i~~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~-~Svl~~~v~v~ 219 (873)
.|+++. .......+...+..+++-.+ . .......+ ..++.|..++.|. +++|+++|.|+
T Consensus 234 ~~~~a~~~l~~~~~~~~~~~~~~~i~~~~-~-----~i~~~v~i-----------g~~~~I~~~~~I~~~~~Ig~~~~I~ 296 (459)
T PRK14355 234 QLAEAARVLRRRINRELMLAGVTLIDPET-T-----YIDRGVVI-----------GRDTTIYPGVCISGDTRIGEGCTIE 296 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEECCCc-e-----EECCCeEE-----------cCCCEEeCCcEEeCCCEECCCCEEC
Confidence 666651 10000000011112222100 0 00000000 1111122222221 35778888888
Q ss_pred CCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861 220 EDSLIYDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 220 ~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
++++|++|+|++++.||++|+|.++++..+
T Consensus 297 ~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~ 326 (459)
T PRK14355 297 QGVVIKGCRIGDDVTVKAGSVLEDSVVGDD 326 (459)
T ss_pred CCCEEeCCEEcCCCEECCCeEEeCCEECCC
Confidence 888888888888888888888887777665
No 75
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=6.2e-07 Score=102.59 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=44.6
Q ss_pred ccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861 198 VSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 198 ~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
+..|.+|+.|.||||+.+|+||++++|.+|+|..||+||.||+|.+|+|-.+
T Consensus 339 gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~ 390 (673)
T KOG1461|consen 339 GTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD 390 (673)
T ss_pred cccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC
Confidence 3467788888899999999999999999999999999999999998888665
No 76
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=98.48 E-value=1.5e-05 Score=84.17 Aligned_cols=191 Identities=24% Similarity=0.285 Sum_probs=112.4
Q ss_pred CEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCChhhhhHhhcccCeeEEecC---
Q 002861 632 GLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSF--- 708 (873)
Q Consensus 632 G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~g~~~G~~Dq~~~~~GG~~~~~~~--- 708 (873)
.+.|...+|+|..+||.||||--+|++.||+++|+++.++++|.++|.+ |.|+ ..-++|||+...+..
T Consensus 105 ~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~-----GSGS----ACRSl~GG~V~W~mG~~~ 175 (395)
T KOG2833|consen 105 KLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQ-----GSGS----ACRSLYGGFVAWEMGELD 175 (395)
T ss_pred eEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhc-----cCch----hhhhhhcceeEeeccccc
Confidence 4666667899999999999999999999999999999999999998863 3322 446899999987532
Q ss_pred CCC-cceeEEEeec-CChhhhhhcCcEEEEEEeCC---cchHHHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHHHHHh
Q 002861 709 PGI-PLRLQVIPLL-ASPQLILELQQRLLVVFTGQ---VRLAHQVLQKVVTRYLQRDNLLISSIKR-LTELAKNGRDALM 782 (873)
Q Consensus 709 ~~~-~~~~~v~pl~-~~~~~~~~~~~~lllv~tg~---tr~t~~~l~~v~~~~~~~~~~~~~~~~~-i~~~~~~~~~AL~ 782 (873)
+|. .+-+++.|-. +++ + ..+++|.++. +.+|..+.+.+.... -+...+++ +-+...+|.+|+.
T Consensus 176 DGsDsvAvq~~p~~~W~e-----l-~ililVvs~~~K~t~ST~GM~~sveTS~-----L~qhRi~~vVP~Ri~~m~eaI~ 244 (395)
T KOG2833|consen 176 DGSDSVAVQIAPSSHWPE-----L-RILILVVSDAKKKTGSTEGMRRSVETSQ-----LLQHRIESVVPQRIQQMREAIR 244 (395)
T ss_pred CCCceeEEEeccccCCCc-----e-EEEEEEeccccccccccHHHHHHHHHhH-----HHHHHHHhhhHHHHHHHHHHHH
Confidence 221 1222333321 221 1 2344444432 345555544432111 11111122 1123467899999
Q ss_pred ccCHHHHHHH-HHHHHHHHhh-h--CCCC--ChHHHHHHHHHHcc-----C-CceEEecCCCccceeEEEeC
Q 002861 783 NCDVDELGKI-MLEAWRLHQE-L--DPHC--SNEFVDRLFAFADP-----Y-CCGYKLVGAGGGGFALLLAK 842 (873)
Q Consensus 783 ~gd~~~lg~l-m~~~~~~~~~-l--~~~v--s~p~l~~l~~~a~~-----g-a~G~klsGAGgGG~v~~l~~ 842 (873)
+.|++.|+++ |.++-+.+.- | +|.+ .+..-.+++..+.+ | -..+----||+--|+|.+.+
T Consensus 245 ~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t~vAYTFDAGPNAvl~~l~e 316 (395)
T KOG2833|consen 245 ERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGTRVAYTFDAGPNAVLIVLEE 316 (395)
T ss_pred hcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccchHHHHHHHHHHHhccCCeeEEEEecCCCceEEEEhhh
Confidence 9999999998 5555333222 2 2211 11112234444432 2 23445568999767776643
No 77
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.47 E-value=5.3e-07 Score=105.22 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=53.6
Q ss_pred CCCe--eeccCCCcCcC--CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCC
Q 002861 2 TGDV--LPCFDASTMIL--PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDD 77 (873)
Q Consensus 2 ~gD~--i~~~d~~~~~~--~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~ 77 (873)
.||+ +-..++..|+. .++++++.+.+++ ....+|+++.+ ++ +|..|.+||+..+.. ..+
T Consensus 105 ~gD~P~i~~~~i~~li~~~~~~~~~l~~~~~~--~~~~~g~v~~~-~g---------~V~~~~ek~~~~~~~-----~~~ 167 (456)
T PRK14356 105 NGDTPLVTTDTIDDFLKEAAGADLAFMTLTLP--DPGAYGRVVRR-NG---------HVAAIVEAKDYDEAL-----HGP 167 (456)
T ss_pred eCCcccCCHHHHHHHHHHHhcCCEEEEEEEcC--CCCCceEEEEc-CC---------eEEEEEECCCCChHH-----hhh
Confidence 4666 22333444443 4678888888765 34689998774 55 799999999753211 012
Q ss_pred CccceeeceeeecchHHHHHHh
Q 002861 78 GRALLDTGIIAVRGKAWEELVM 99 (873)
Q Consensus 78 ~~~l~~~Gi~~f~~~~~~~ll~ 99 (873)
..-++.+|+|+|+.+.+.+++.
T Consensus 168 ~~~~~~~GiY~f~~~~l~~ll~ 189 (456)
T PRK14356 168 ETGEVNAGIYYLRLDAVESLLP 189 (456)
T ss_pred hcCeEEEEEEEEEHHHHHHHHH
Confidence 2346899999999998777665
No 78
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=98.46 E-value=4.6e-07 Score=92.93 Aligned_cols=200 Identities=19% Similarity=0.196 Sum_probs=121.9
Q ss_pred CEEEEEeeccCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHc--------C-----------------
Q 002861 632 GLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM--------G----------------- 686 (873)
Q Consensus 632 G~~i~i~s~IP~GsGLGSSSAlavA~l~Al~~~~g~~ls~~eL~~la~~~E~~~--------g----------------- 686 (873)
+-.+++.+-||.|+|+|||++..+|-+...++...+.+++......+..+|.+. |
T Consensus 94 ~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~~ 173 (355)
T KOG1537|consen 94 TTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAKV 173 (355)
T ss_pred ceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhhh
Confidence 456777888999999999999999999988888888877666555555554421 1
Q ss_pred CCChhhhhHhhcccCeeEEecCCCCcceeEEEeecCChhhhhhcCcEEEEEEeCC---cchHHHHHHHHHHHHhhcCHHH
Q 002861 687 TGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQ---VRLAHQVLQKVVTRYLQRDNLL 763 (873)
Q Consensus 687 ~~~G~~Dq~~~~~GG~~~~~~~~~~~~~~~v~pl~~~~~~~~~~~~~lllv~tg~---tr~t~~~l~~v~~~~~~~~~~~ 763 (873)
.+-..+|......||+..++..+...+. +...+++.+ +.+++++.+.. |.+.+.+|+..+.. .+.
T Consensus 174 ~~~~ad~ilp~~~gg~~li~~lpP~dlg-~~~r~pw~~------~lk~i~viP~Fel~T~k~R~vLPt~yp~-----~d~ 241 (355)
T KOG1537|consen 174 SGYHADNILPAIMGGFVLIRNLPPLDLG-KPLRFPWDK------DLKFILVIPDFELPTKKMRAVLPTEYPM-----VDH 241 (355)
T ss_pred cCCCHHHhcccccCCeeeecCCCccccc-ccccCCCCc------cceEEEEeccccccchhhhhhcCccccc-----eee
Confidence 1223456667777777776655432210 112233333 45777777655 44455555543221 122
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-C-HHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHHHcc----CCceEEecCCCcccee
Q 002861 764 ISSIKRLTELAKNGRDALMNC-D-VDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP----YCCGYKLVGAGGGGFA 837 (873)
Q Consensus 764 ~~~~~~i~~~~~~~~~AL~~g-d-~~~lg~lm~~~~~~~~~l~~~vs~p~l~~l~~~a~~----ga~G~klsGAGgGG~v 837 (873)
+-+++++. .+..|+.++ | ......+|.+-.++ ... .-..|.++++.+.+.+ |.+|..+||||+ ++
T Consensus 242 V~NlqrlA----~LttAl~~~p~n~~L~y~~m~Dkvhq--PyR-a~LIPGl~~il~~~~p~t~pGl~GiclSGAGP--T~ 312 (355)
T KOG1537|consen 242 VWNLQRLA----ALTTALLEGPDNVMLGYALMSDKVHQ--PYR-APLIPGLEAILKAALPATYPGLFGICLSGAGP--TA 312 (355)
T ss_pred eecHHHHH----HHHHHHhcCCCchhhhhhhhhccccC--ccc-cccCccHHHHHHhhCcccCCceeeEEecCCCC--ee
Confidence 33445443 245667666 3 44555566654321 111 1235888999888874 789999999999 99
Q ss_pred EEEeCCcchHHHHHHHH
Q 002861 838 LLLAKDAESATELRRML 854 (873)
Q Consensus 838 ~~l~~~~~~a~~i~~~L 854 (873)
++++.+ .-++|.+.+
T Consensus 313 lAlate--nf~eI~~~m 327 (355)
T KOG1537|consen 313 LALATE--NFQEIGEKM 327 (355)
T ss_pred EEEecC--cHHHHHHHH
Confidence 999874 344444333
No 79
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.43 E-value=5.3e-07 Score=105.02 Aligned_cols=65 Identities=12% Similarity=0.241 Sum_probs=49.1
Q ss_pred CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861 17 PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE 96 (873)
Q Consensus 17 ~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ 96 (873)
.++++++++.+++ ..+.+|+...|+++ +|.+|.+||+....+ +...++.+|+|+|+.+.+.+
T Consensus 122 ~~~~~~~~~~~~~--~~~~~g~~~~d~~g---------~v~~~~ek~~~~~~~-------~~~~~~~~Giy~f~~~~l~~ 183 (450)
T PRK14360 122 SNADVTLLTARLP--NPKGYGRVFCDGNN---------LVEQIVEDRDCTPAQ-------RQNNRINAGIYCFNWPALAE 183 (450)
T ss_pred cCCcEEEEEEecC--CCCCccEEEECCCC---------CEEEEEECCCCChhH-------hcCcEEEEEEEEEEHHHHHH
Confidence 5678888777654 34569999998877 799999999753221 12347899999999988888
Q ss_pred HHh
Q 002861 97 LVM 99 (873)
Q Consensus 97 ll~ 99 (873)
++.
T Consensus 184 ~~~ 186 (450)
T PRK14360 184 VLP 186 (450)
T ss_pred HHh
Confidence 775
No 80
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.37 E-value=1.6e-06 Score=101.91 Aligned_cols=81 Identities=16% Similarity=0.268 Sum_probs=56.0
Q ss_pred CCCe--eeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861 2 TGDV--LPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL 75 (873)
Q Consensus 2 ~gD~--i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~ 75 (873)
.||+ +...++.+|+. .++++++...+.. ..+.+|+.+.|+++ +|.+|.+||..++-+
T Consensus 106 ~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~--~p~~yg~~~~~~~g---------~V~~~~EKp~~~~~~------ 168 (482)
T PRK14352 106 AGDVPLLDGETLADLVATHTAEGNAVTVLTTTLD--DPTGYGRILRDQDG---------EVTAIVEQKDATPSQ------ 168 (482)
T ss_pred eCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecC--CCCCCCEEEECCCC---------CEEEEEECCCCCHHH------
Confidence 4676 23445555554 4577777776543 45679999888777 799999999854211
Q ss_pred CCCccceeeceeeecchHHHHHHhh
Q 002861 76 DDGRALLDTGIIAVRGKAWEELVML 100 (873)
Q Consensus 76 ~~~~~l~~~Gi~~f~~~~~~~ll~~ 100 (873)
....++.||+|+|+.+.+.+++..
T Consensus 169 -~~~~~~~~Giy~f~~~~l~~~~~~ 192 (482)
T PRK14352 169 -RAIREVNSGVYAFDAAVLRSALAR 192 (482)
T ss_pred -hhcceEEEEEEEEEHHHHHHHHHh
Confidence 012357899999999998887763
No 81
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.37 E-value=2.4e-06 Score=99.51 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=55.6
Q ss_pred CCCe--eeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861 2 TGDV--LPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL 75 (873)
Q Consensus 2 ~gD~--i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~ 75 (873)
.||. +...|+.+|+. +++++|+...+++ ..+.+|+...| ++ +| .+.+||..++-.
T Consensus 96 ~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~--~~~~~g~v~~d-~g---------~v-~~~e~~~~~~~~------ 156 (448)
T PRK14357 96 YGDVPLISENTLKRLIEEHNRKGADVTILVADLE--DPTGYGRIIRD-GG---------KY-RIVEDKDAPEEE------ 156 (448)
T ss_pred eCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC--CCCCcEEEEEc-CC---------eE-EEEECCCCChHH------
Confidence 4675 44556566655 5789999998875 45789999887 44 57 899988643211
Q ss_pred CCCccceeeceeeecchHHHHHHh
Q 002861 76 DDGRALLDTGIIAVRGKAWEELVM 99 (873)
Q Consensus 76 ~~~~~l~~~Gi~~f~~~~~~~ll~ 99 (873)
....++.+|+|+|+.+.+.+++.
T Consensus 157 -~~~~~~~~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 157 -KKIKEINTGIYVFSGDFLLEVLP 179 (448)
T ss_pred -hcCcEEEeEEEEEEHHHHHHHHH
Confidence 12347899999999998888775
No 82
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.34 E-value=2.4e-06 Score=99.46 Aligned_cols=196 Identities=15% Similarity=0.194 Sum_probs=101.2
Q ss_pred CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861 17 PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE 96 (873)
Q Consensus 17 ~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ 96 (873)
+++++++.+.+. +....+|+++.+ ++ +|.+|.+||+.+.- .....+..+|+|+|+.+.+.+
T Consensus 126 ~~~~~~i~~~~~--~~~~~~g~~~~~-~g---------~v~~~~ek~~~~~~-------~~~~~~~~~Giy~~~~~~l~~ 186 (446)
T PRK14353 126 DGADVVVLGFRA--ADPTGYGRLIVK-GG---------RLVAIVEEKDASDE-------ERAITLCNSGVMAADGADALA 186 (446)
T ss_pred cCCcEEEEEEEe--CCCCcceEEEEC-CC---------eEEEEEECCCCChH-------HhhceEEEEEEEEEEHHHHHH
Confidence 568888888875 344688988873 45 68999999975321 112247889999999988777
Q ss_pred HHhhhcCCchhhhhhhccccchhhhHHHHhhc---c----c--ccccccccCCCc--hhHHhh---hhc----Ccce---
Q 002861 97 LVMLSCSCPPMVSELLKSGKEMSLYEDLVAAW---V----P--AKHDWLMLRPLG--KELVSK---LGK----QRMF--- 155 (873)
Q Consensus 97 ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~---~----~--~~~~Y~~~~pvg--d~~~~~---l~~----~~i~--- 155 (873)
+++..... . ...+++ ..|.+..+ + . ....+|.+ ++ +.|..+ +.. ..+.
T Consensus 187 ~l~~~~~~------~--~~~~~~-~~d~~~~l~~~g~~v~~~~~~~~~~~~--I~t~~dl~~a~~~~~~~~~~~~~~~~~ 255 (446)
T PRK14353 187 LLDRVGND------N--AKGEYY-LTDIVAIARAEGLRVAVVEAPEDEVRG--INSRAELAEAEAVWQARRRRAAMLAGV 255 (446)
T ss_pred HHHhhccc------C--CCCcEe-HHHHHHHHHHCCCeEEEEecChhhccc--CCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 66532100 0 011111 12333222 1 1 22346766 54 222211 100 0011
Q ss_pred EEEecCceeEEecCcHHHHhhhccCCccccccceee-ecCCCcccccccceeEEeeeecCCceeCCCcEEE-EceeCCCe
Q 002861 156 SYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLC-SIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIY-DSNISSGI 233 (873)
Q Consensus 156 ~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~-~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve-~s~l~~~v 233 (873)
.+..|...++|.++ ...+...++....+- +..+..++.|...+.|.+|+|+.+|+|+++++|. +|+|++++
T Consensus 256 ~~~~~~~~~~~~~~-------~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~ 328 (446)
T PRK14353 256 TLIAPETVFFSYDT-------VIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGA 328 (446)
T ss_pred EeeCCCeEEECCce-------EECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCe
Confidence 11122221222110 000000110000000 0111122333344556678888888888888887 78888888
Q ss_pred EECCCcEEeCcCCCCC
Q 002861 234 QIGSLSIVVGTNFPEE 249 (873)
Q Consensus 234 ~IG~~~iisg~~i~~~ 249 (873)
.||.+|.|.++.|..+
T Consensus 329 ~Ig~~~~i~~~~i~~~ 344 (446)
T PRK14353 329 KVGNFVEVKNAKLGEG 344 (446)
T ss_pred EEcCceEEeceEECCC
Confidence 8888888888777665
No 83
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.30 E-value=2.4e-06 Score=98.91 Aligned_cols=199 Identities=14% Similarity=0.174 Sum_probs=99.5
Q ss_pred CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861 17 PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE 96 (873)
Q Consensus 17 ~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ 96 (873)
.++++++.+.+++ ....+|+...| ++ +|..|.+||...+ .+....++.+|+|+|+.+.+.+
T Consensus 117 ~~~~~~v~~~~~~--~~~~~g~v~~d-~g---------~v~~i~e~~~~~~-------~~~~~~~~~~Giyif~~~~l~~ 177 (430)
T PRK14359 117 NDADIVMSVFHLA--DPKGYGRVVIE-NG---------QVKKIVEQKDANE-------EELKIKSVNAGVYLFDRKLLEE 177 (430)
T ss_pred CCCCEEEEEEEcC--CCccCcEEEEc-CC---------eEEEEEECCCCCc-------ccccceEEEeEEEEEEHHHHHH
Confidence 5688888888764 34579987765 44 6899999986431 0011347899999999999887
Q ss_pred HHhhhcCCchhhhhhhccccchhhhHHHHhhc---c----c--ccccccccCCCc--hhHHhh---hhc---Ccce----
Q 002861 97 LVMLSCSCPPMVSELLKSGKEMSLYEDLVAAW---V----P--AKHDWLMLRPLG--KELVSK---LGK---QRMF---- 155 (873)
Q Consensus 97 ll~~~~~~~d~g~d~~~~~~~~~~y~df~~~~---~----~--~~~~Y~~~~pvg--d~~~~~---l~~---~~i~---- 155 (873)
++..-.. +.. ..++.+ .|....+ + . ....||.+ ++ +.|+.+ |.. ..++
T Consensus 178 ~~~~~~~------~~~--~~e~~l-~d~i~~l~~~g~~v~~~~~~~~~w~d--I~t~~dl~~a~~~l~~~~~~~~~~~g~ 246 (430)
T PRK14359 178 YLPLLKN------QNA--QKEYYL-TDIIALAIEKGETIKAVFVDEENFMG--VNSKFELAKAEEIMQERIKKNAMKQGV 246 (430)
T ss_pred HHHhcCc------ccc--cCceeh-hhHHHHHHHcCCeEEEEEcCCCEEeC--CCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7642110 000 111111 1232222 1 1 12358877 64 333333 110 0000
Q ss_pred EEEecCceeEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEE
Q 002861 156 SYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQI 235 (873)
Q Consensus 156 ~~~~p~a~F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~I 235 (873)
....|+.-|.+-+..-+ =...+.....++....+.++.+.. +|.+.+++|.+|+++++++|+++++|++|+|+.++.|
T Consensus 247 ~~~~~~~~~~~~~~~i~-g~~~ig~~~~I~~~~~i~~~~i~~-~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i 324 (430)
T PRK14359 247 IMRLPETIYIESGVEFE-GECELEEGVRILGKSKIENSHIKA-HSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVET 324 (430)
T ss_pred EEecCCeeEECCCcEEc-CceEECCCCEECCCeEEEeeEECC-CCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEE
Confidence 01222232322111000 001111111222222222333333 4444456777888888888888888888888888765
Q ss_pred CCCcEEeCcCCCC
Q 002861 236 GSLSIVVGTNFPE 248 (873)
Q Consensus 236 G~~~iisg~~i~~ 248 (873)
+... |.++.+..
T Consensus 325 ~~~~-~~~~~i~~ 336 (430)
T PRK14359 325 KNAK-LNGVKAGH 336 (430)
T ss_pred cccE-eccccccc
Confidence 5533 24444433
No 84
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.27 E-value=3.5e-06 Score=98.12 Aligned_cols=80 Identities=16% Similarity=0.310 Sum_probs=53.7
Q ss_pred CCCe--eeccCCCcCcC--CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCC
Q 002861 2 TGDV--LPCFDASTMIL--PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDD 77 (873)
Q Consensus 2 ~gD~--i~~~d~~~~~~--~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~ 77 (873)
.||+ +...++..++. ...++++++.+++ ..+.+|++..|+++ +|.+|.+||...+-+ .
T Consensus 98 ~~D~p~i~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~g~v~~d~~g---------~v~~~~ek~~~~~~~-------~ 159 (451)
T TIGR01173 98 YGDVPLISAETLERLLEAHRQNGITLLTAKLP--DPTGYGRIIRENDG---------KVTAIVEDKDANAEQ-------K 159 (451)
T ss_pred ECCcCCcCHHHHHHHHHHHhhCCEEEEEEecC--CCCCCCEEEEcCCC---------CEEEEEEcCCCChHH-------h
Confidence 4666 22344444443 2346777777764 45669999988776 789999998753211 1
Q ss_pred CccceeeceeeecchHHHHHHh
Q 002861 78 GRALLDTGIIAVRGKAWEELVM 99 (873)
Q Consensus 78 ~~~l~~~Gi~~f~~~~~~~ll~ 99 (873)
...++.+|+|+|+.+.+.+++.
T Consensus 160 ~~~~~~~G~y~~~~~~l~~~l~ 181 (451)
T TIGR01173 160 AIKEINTGVYVFDGAALKRWLP 181 (451)
T ss_pred cCcEEEEEEEEEeHHHHHHHHH
Confidence 2347899999999999877765
No 85
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=6.8e-06 Score=86.16 Aligned_cols=215 Identities=14% Similarity=0.175 Sum_probs=121.4
Q ss_pred CCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCC
Q 002861 3 GDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDG 78 (873)
Q Consensus 3 gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~ 78 (873)
.||.-.|-...|.. .++-.|..+..++.+.|+|||..+.|++.. +|..+.+||+.=-
T Consensus 115 aDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~--------evlHYveKPsTfv----------- 175 (407)
T KOG1460|consen 115 ADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTG--------EVLHYVEKPSTFV----------- 175 (407)
T ss_pred cceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcC--------ceEEeecCcchhh-----------
Confidence 35444444455555 778899999999999999999999997742 7899999998642
Q ss_pred ccceeeceeeecchHHHHHHhhhcCC-chh---hhhhh---ccc-cchhhhHHHHhhccc-------cccccccc-CCCc
Q 002861 79 RALLDTGIIAVRGKAWEELVMLSCSC-PPM---VSELL---KSG-KEMSLYEDLVAAWVP-------AKHDWLML-RPLG 142 (873)
Q Consensus 79 ~~l~~~Gi~~f~~~~~~~ll~~~~~~-~d~---g~d~~---~~~-~~~~~y~df~~~~~~-------~~~~Y~~~-~pvg 142 (873)
.-.++.|+|+|+++.+...-. -+.. .|. -+|+- +.| -.+.+--|.+.+|.. .+.+||+- ...|
T Consensus 176 Sd~InCGvYlF~~eif~~i~~-v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtag 254 (407)
T KOG1460|consen 176 SDIINCGVYLFTPEIFNAIAE-VYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAG 254 (407)
T ss_pred hcccceeEEEecHHHHHHHHH-HHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhcccc
Confidence 226789999999987644221 1100 110 01110 001 123333477777742 34577855 1124
Q ss_pred hhHHhh---hhcCcce---EEEec-Cce-------eEEecCcHHHHhhhccCCccccccceeeecCCCcccccccceeEE
Q 002861 143 KELVSK---LGKQRMF---SYCAY-ELL-------FLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVL 208 (873)
Q Consensus 143 d~~~~~---l~~~~i~---~~~~p-~a~-------F~h~gt~~e~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~ 208 (873)
.+++.. |+..+-. .++.. ++. |+|=. ..+.-.-.+|.. ..++....+..|..++
T Consensus 255 sal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPs-------akvhptAkiGPN-----VSIga~vrvg~GvRl~ 322 (407)
T KOG1460|consen 255 SALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPS-------AKVHPTAKIGPN-----VSIGANVRVGPGVRLR 322 (407)
T ss_pred ceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCc-------ceeCCccccCCC-----ceecCCceecCCceee
Confidence 322211 1111000 11111 111 22200 000000011111 1122234466778888
Q ss_pred eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861 209 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
+|++-.++.|.++++|-||+|+=..+||+=++|.+.++..+
T Consensus 323 ~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s 363 (407)
T KOG1460|consen 323 ESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPS 363 (407)
T ss_pred eeeeccCcEeeccceEEeeeecccccccceeeecccccccC
Confidence 88888888888888888888888888888888888776543
No 86
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=3.3e-06 Score=91.72 Aligned_cols=74 Identities=23% Similarity=0.216 Sum_probs=57.2
Q ss_pred hhccCCccccccceeeecCCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861 176 HLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 176 ~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
+++.+..+++-...++.|..+.+|.|.+.+.|.+|+|.++|+||+|+.||+|+|+.+++||++|.|++|+|..+
T Consensus 335 ~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~ 408 (433)
T KOG1462|consen 335 SIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPG 408 (433)
T ss_pred hccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEecCC
Confidence 44455556665556667777777777788888888888888888888888888888888888888888888776
No 87
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.10 E-value=1.9e-05 Score=92.30 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=47.6
Q ss_pred CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861 17 PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE 96 (873)
Q Consensus 17 ~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ 96 (873)
.++++|++..+.+ ....+|++..|+++ +|..|.+||...+ .++...++.+|+|+|+.+.+.+
T Consensus 121 ~~~~~t~~~~~~~--~~~~~g~v~~d~~~---------~V~~~~ek~~~~~-------~~~~~~~~~~Giy~f~~~~l~~ 182 (458)
T PRK14354 121 HKAAATILTAIAE--NPTGYGRIIRNENG---------EVEKIVEQKDATE-------EEKQIKEINTGTYCFDNKALFE 182 (458)
T ss_pred cCCceEEEEEEcC--CCCCceEEEEcCCC---------CEEEEEECCCCCh-------HHhcCcEEEEEEEEEEHHHHHH
Confidence 4688888887754 34568998888776 7999999985321 0113457899999999988777
Q ss_pred HHh
Q 002861 97 LVM 99 (873)
Q Consensus 97 ll~ 99 (873)
.+.
T Consensus 183 ~l~ 185 (458)
T PRK14354 183 ALK 185 (458)
T ss_pred HHH
Confidence 665
No 88
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=98.01 E-value=4.2e-06 Score=89.98 Aligned_cols=77 Identities=21% Similarity=0.310 Sum_probs=64.6
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeC-CCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAA-KDGILNENYALSLVDDLLQKPNVDELAKNHAIL 75 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d-~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~ 75 (873)
+.||+++.+|+..|+. +++++|+++.+++.+..+.+||+.+| +++ +|.+|.+||..+.
T Consensus 109 ~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g---------~v~~~~Ekp~~~~-------- 171 (257)
T cd06428 109 LNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTG---------EVLHYVEKPETFV-------- 171 (257)
T ss_pred EcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCC---------eEEEEEeCCCCcc--------
Confidence 4699999999998887 67999999999888888999999998 556 7999999997542
Q ss_pred CCCccceeeceeeecchHHHHH
Q 002861 76 DDGRALLDTGIIAVRGKAWEEL 97 (873)
Q Consensus 76 ~~~~~l~~~Gi~~f~~~~~~~l 97 (873)
..++.+|+|+|+.+.+..+
T Consensus 172 ---~~~~~~Giyi~~~~~~~~i 190 (257)
T cd06428 172 ---SDLINCGVYLFSPEIFDTI 190 (257)
T ss_pred ---cceEEEEEEEECHHHHHHH
Confidence 3379999999999987544
No 89
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=97.96 E-value=3.5e-06 Score=89.73 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=66.7
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
+.||+++.+|+..|+. .++++++.....+.+..+.||+..+|+++ +|.+|.|||..+..
T Consensus 109 ~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~---------~V~~~~EKP~~~~~-------- 171 (248)
T PF00483_consen 109 LNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDG---------RVIRIVEKPDNPNA-------- 171 (248)
T ss_dssp ETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTS---------EEEEEEESCSSHSH--------
T ss_pred EeccccccchhhhHHHhhhccccccccccccccccccccceeeeeccce---------eEEEEeccCccccc--------
Confidence 4799999999999987 55655555666667789999999999877 89999999987742
Q ss_pred CCccceeeceeeecchHHHHHHh
Q 002861 77 DGRALLDTGIIAVRGKAWEELVM 99 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~~ll~ 99 (873)
..++++|+|+|+.+.+..++.
T Consensus 172 --~~~~~~G~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 172 --SNLINTGIYIFKPEIFDFLLE 192 (248)
T ss_dssp --SSEEEEEEEEEETHHHHHHHH
T ss_pred --ceeccCceEEEcchHHHHHhh
Confidence 568999999999999888865
No 90
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=97.90 E-value=2.1e-05 Score=68.85 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=33.9
Q ss_pred cccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861 199 SDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 199 ~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
+.|..++.|.+|+|.+++.|++++.|++|+|++++.||.++.|.++++.++
T Consensus 23 ~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~ 73 (81)
T cd04652 23 CKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSG 73 (81)
T ss_pred CEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCC
Confidence 334445556667777777777777777777777777777777777766665
No 91
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=97.90 E-value=2.6e-05 Score=71.91 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=57.4
Q ss_pred eeeecCCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 189 HLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 189 ~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
.+.++.+..++.|. ++.|.+|++++++.|++++.|++|+|++++.||++|.|.++++.++ +.|++++.+
T Consensus 9 ~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~----------~~Ig~~~~v 77 (104)
T cd04651 9 EVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKN----------VVIPDGVVI 77 (104)
T ss_pred EEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCC----------CEECCCCEE
Confidence 34555555544444 7889999999999999999999999999999999999999999887 888888754
No 92
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=97.83 E-value=4.1e-05 Score=80.49 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=62.7
Q ss_pred CCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCC
Q 002861 2 TGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDD 77 (873)
Q Consensus 2 ~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~ 77 (873)
-||-|+.-+.+..+. .++|+++++.+|+ ..++|||..+|+++ +|....|||..|+
T Consensus 106 LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~--dP~rfGV~e~d~~~---------~v~~l~EKP~~P~---------- 164 (286)
T COG1209 106 LGDNIFQDGLSELLEHFAEEGSGATILLYEVD--DPSRYGVVEFDEDG---------KVIGLEEKPKEPK---------- 164 (286)
T ss_pred ecCceeccChHHHHHHHhccCCCcEEEEEEcC--CcccceEEEEcCCC---------cEEEeEECCCCCC----------
Confidence 488888888877776 5689999999887 89999999999988 7999999998873
Q ss_pred CccceeeceeeecchHHHH
Q 002861 78 GRALLDTGIIAVRGKAWEE 96 (873)
Q Consensus 78 ~~~l~~~Gi~~f~~~~~~~ 96 (873)
.-++.+|+|+|+..+.+.
T Consensus 165 -SNlAvtGlY~~d~~Vf~~ 182 (286)
T COG1209 165 -SNLAVTGLYFYDPSVFEA 182 (286)
T ss_pred -CceeEEEEEEeChHHHHH
Confidence 569999999999987653
No 93
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=2.7e-05 Score=89.53 Aligned_cols=233 Identities=13% Similarity=0.155 Sum_probs=134.6
Q ss_pred CCCCeeeccCCCcCcC---------CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceee---cCCHHHH
Q 002861 1 MTGDVLPCFDASTMIL---------PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQ---KPNVDEL 68 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~---------~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~---KPs~~~l 68 (873)
.+|||+-.|+.+.++. +++=.|.+=.+.+--..+++=|+.+|+... ++..|.. +-..-++
T Consensus 132 Vsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~avd~~T~--------~ll~yq~~~~~~~~~~l 203 (673)
T KOG1461|consen 132 VSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAVDSRTS--------RLLHYQKCVREKHDIQL 203 (673)
T ss_pred EeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEEEcCCcc--------eEEeehhhccccccccc
Confidence 3799999999999887 556677777776644567788899998752 2232221 0101111
Q ss_pred hhcCccc-CC----CccceeeceeeecchHHHHHHhhhcCC----chhhhhhhcc-------------cc----------
Q 002861 69 AKNHAIL-DD----GRALLDTGIIAVRGKAWEELVMLSCSC----PPMVSELLKS-------------GK---------- 116 (873)
Q Consensus 69 ~~~~a~~-~~----~~~l~~~Gi~~f~~~~~~~ll~~~~~~----~d~g~d~~~~-------------~~---------- 116 (873)
.. ..+. .+ ..-|+|.+|-+-|+.++. |.+|.+| .||.+-++.+ ++
T Consensus 204 ~~-sl~d~~~~v~vr~DL~dc~IdIcS~~V~s--LF~dNFDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~ 280 (673)
T KOG1461|consen 204 DL-SLFDSNDEVEVRNDLLDCQIDICSPEVLS--LFTDNFDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLR 280 (673)
T ss_pred CH-HHhcCCCcEEEEccCCCceeeEecHhHHH--HhhhcccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccH
Confidence 10 0011 11 133778888887777663 4445433 4444433321 11
Q ss_pred chhhh-HHHHhhcc-c--ccccccccCCCc---hhHHhhhhcCcceEEEecCceeE-EecCcHHHHhhhccCCccccccc
Q 002861 117 EMSLY-EDLVAAWV-P--AKHDWLMLRPLG---KELVSKLGKQRMFSYCAYELLFL-HFGTSSEVLDHLSGDVSGLVGRR 188 (873)
Q Consensus 117 ~~~~y-~df~~~~~-~--~~~~Y~~~~pvg---d~~~~~l~~~~i~~~~~p~a~F~-h~gt~~e~l~~l~~~~~~l~~~~ 188 (873)
.|+++ .|+++.|. | +...+..+++.. ...|.. ....+.+.+.-.+.++ -.|| .++...
T Consensus 281 syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~-~dv~~~~~~~v~~~~~ig~gT-------------~Ig~g~ 346 (673)
T KOG1461|consen 281 SYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKS-PDVVLSHSVIVGANVVIGAGT-------------KIGSGS 346 (673)
T ss_pred HHHHHHHHHHHhhcccccccccCCCCceeeecccccccC-ccceehhhccccceEEecccc-------------cccCCC
Confidence 11111 25555553 2 222222222210 111110 0000000011112222 1222 345556
Q ss_pred eeeecCCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEE-eCcCCCCCCCCCccCccceeeCCCee
Q 002861 189 HLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIV-VGTNFPEEAGSTAEDSFRFMLPDRHC 267 (873)
Q Consensus 189 ~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~ii-sg~~i~~~~~~~~~~~~~~~iP~~~~ 267 (873)
.+.+|.++.+|+|.+...|.+|.|..+|+|+.||.|+||+|.++|+|+++|+| -||++..+ +++|++..
T Consensus 347 ~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~----------VVv~~~~~ 416 (673)
T KOG1461|consen 347 KISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFG----------VVVGRNFV 416 (673)
T ss_pred eeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeee----------eEeCCCcc
Confidence 78888888888899998899999999999999999999999999999999999 78887665 78887774
Q ss_pred e
Q 002861 268 L 268 (873)
Q Consensus 268 i 268 (873)
+
T Consensus 417 l 417 (673)
T KOG1461|consen 417 L 417 (673)
T ss_pred c
Confidence 3
No 94
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=97.62 E-value=0.00012 Score=63.50 Aligned_cols=58 Identities=22% Similarity=0.377 Sum_probs=48.5
Q ss_pred cccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 201 IAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 201 i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
|..++.+.+|+|++++.|++++.|++|+|++++.||++|.|.++++..+ +.|.++..+
T Consensus 8 I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~----------~~i~~~~~i 65 (79)
T cd03356 8 IGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN----------AVIGENVRV 65 (79)
T ss_pred ECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC----------CEECCCCEE
Confidence 4456778889999999999999999999999999999999999888776 666666533
No 95
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=97.58 E-value=0.00013 Score=63.82 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=51.8
Q ss_pred ccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 200 DIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 200 ~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
.|..++.|.+|+|++++.|++++.|++|+|++++.||++|.|.++.+.++ +.|.++..+
T Consensus 7 ~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~----------~~i~~~~~v 65 (81)
T cd04652 7 QVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG----------AVIGEKCKL 65 (81)
T ss_pred EECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC----------CEECCCCEE
Confidence 35566778899999999999999999999999999999999999998776 778777644
No 96
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00017 Score=78.66 Aligned_cols=106 Identities=13% Similarity=0.127 Sum_probs=76.6
Q ss_pred cCcceEEEec-CceeEEecCcHHHHh--------hhccCCcccc---c--cceeeecCCCcccccccceeEEeeeecCCc
Q 002861 151 KQRMFSYCAY-ELLFLHFGTSSEVLD--------HLSGDVSGLV---G--RRHLCSIPATTVSDIAASAVVLSSKIAHGV 216 (873)
Q Consensus 151 ~~~i~~~~~p-~a~F~h~gt~~e~l~--------~l~~~~~~l~---~--~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v 216 (873)
+.|++.+.+| .+-|+|--|..-|++ .|++.+..+- - .-+..++.+...+.|...+.|..|+|+++|
T Consensus 279 ~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~~e~~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC 358 (433)
T KOG1462|consen 279 RIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLCSEAKFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNC 358 (433)
T ss_pred ceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhccccccccchhhheeccchhhccCCCceecccceeeeeeecCCc
Confidence 3556666777 466777766655554 1222221110 0 112245666666777778889999999999
Q ss_pred eeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCe
Q 002861 217 SIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRH 266 (873)
Q Consensus 217 ~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~ 266 (873)
.||+.+.|-+|.|++||.||.+|.|.+|||..+ ..|-+|.
T Consensus 359 ~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g----------A~Ig~gs 398 (433)
T KOG1462|consen 359 DIGERVKVANSILMDNVVVGDGVNIENSIIGMG----------AQIGSGS 398 (433)
T ss_pred cccCCcEEEeeEeecCcEecCCcceecceeccc----------ceecCCC
Confidence 999999999999999999999999999999887 6676766
No 97
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=97.46 E-value=7.5e-05 Score=78.99 Aligned_cols=75 Identities=19% Similarity=0.347 Sum_probs=60.6
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCC-CCCcccccccccccceeecCCHHHHhhcCccc
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAK-DGILNENYALSLVDDLLQKPNVDELAKNHAIL 75 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~-~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~ 75 (873)
+.||+++.+|+..|+. +++++|++..|.+. .+.+|++.+|+ ++ +|.+|.+||..+.
T Consensus 107 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~~~---------~v~~~~ekp~~~~-------- 167 (233)
T cd06425 107 LNSDVICDFPLAELLDFHKKHGAEGTILVTKVED--PSKYGVVVHDENTG---------RIERFVEKPKVFV-------- 167 (233)
T ss_pred EeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC--ccccCeEEEcCCCC---------EEEEEEECCCCCC--------
Confidence 3699999999888877 68999999988753 47899999987 55 7999999997542
Q ss_pred CCCccceeeceeeecchHHHHH
Q 002861 76 DDGRALLDTGIIAVRGKAWEEL 97 (873)
Q Consensus 76 ~~~~~l~~~Gi~~f~~~~~~~l 97 (873)
..++++|+|+|+.+.+..+
T Consensus 168 ---~~~~~~Giyi~~~~~l~~l 186 (233)
T cd06425 168 ---GNKINAGIYILNPSVLDRI 186 (233)
T ss_pred ---CCEEEEEEEEECHHHHHhc
Confidence 3368999999999987543
No 98
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=97.43 E-value=0.00029 Score=60.94 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=49.8
Q ss_pred ccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 200 DIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 200 ~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
.|..++.|.+|++++++.|+++++|.+|+|++++.||++|.|.++.+..+ +.|++++.+
T Consensus 7 ~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~----------~~i~~~~~i 65 (79)
T cd05787 7 SIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG----------AVIGKGCTI 65 (79)
T ss_pred EECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC----------CEECCCCEE
Confidence 35556778889999999999999999999999999999999999888776 777776643
No 99
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=97.36 E-value=0.0006 Score=62.84 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=49.5
Q ss_pred cccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 201 IAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 201 i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
|..++.|.+|+|+++|.|+ ++.|++|+|++++.||++|.|.++.+..+ +.|+++..+
T Consensus 4 i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~----------~~Ig~~~~i 60 (104)
T cd04651 4 IGRRGEVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPN----------VGIGRNAVI 60 (104)
T ss_pred ecCCCEEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCC----------CEECCCCEE
Confidence 4567788999999999999 99999999999999999999999998776 777777654
No 100
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=97.33 E-value=0.00045 Score=59.95 Aligned_cols=58 Identities=24% Similarity=0.272 Sum_probs=47.8
Q ss_pred ecCCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeC-cCCCCC
Q 002861 192 SIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPEE 249 (873)
Q Consensus 192 ~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg-~~i~~~ 249 (873)
++.+..++.|..++.+.+|++.+++.|++++.|.+|+|++++.||.++.|.+ +.+.++
T Consensus 16 ~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~ 74 (79)
T cd03356 16 NSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDD 74 (79)
T ss_pred CCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCC
Confidence 3444444556678889999999999999999999999999999999999987 665444
No 101
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=97.17 E-value=0.00019 Score=77.21 Aligned_cols=80 Identities=20% Similarity=0.184 Sum_probs=59.2
Q ss_pred CCCCeeecc---CCCcCcC----CCCceEEEEEecCccccccceEEEeCC---C-CCcccccccccccceeecCCHHHHh
Q 002861 1 MTGDVLPCF---DASTMIL----PEDASCIITVPITLDIASNHGVIVAAK---D-GILNENYALSLVDDLLQKPNVDELA 69 (873)
Q Consensus 1 ~~gD~i~~~---d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~---~-~~~~~~~~~~~v~~fl~KPs~~~l~ 69 (873)
+.||+++.. |+..|+. +++++ ++..+++.+..+.+||..+|. + + +|.+|.+||+.++
T Consensus 125 ~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~---------~v~~~~Ekp~~~~-- 192 (260)
T TIGR01099 125 ILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLY---------EIKDMVEKPKPEE-- 192 (260)
T ss_pred EeccceecCCcHHHHHHHHHHHHhCCCE-EEEEECChhhcccCceEEeccccCCce---------eEEEEEECCCCCC--
Confidence 468999876 5888877 56776 555677777889999999873 2 3 6999999996432
Q ss_pred hcCcccCCCccceeeceeeecchHHHHHHh
Q 002861 70 KNHAILDDGRALLDTGIIAVRGKAWEELVM 99 (873)
Q Consensus 70 ~~~a~~~~~~~l~~~Gi~~f~~~~~~~ll~ 99 (873)
+...++.+|+|+|+.+.+..+..
T Consensus 193 -------~~~~~~~~Giyi~~~~~~~~l~~ 215 (260)
T TIGR01099 193 -------APSNLAIVGRYVLTPDIFDLLEE 215 (260)
T ss_pred -------CCCceEEEEEEECCHHHHHHHHh
Confidence 12347899999999987666543
No 102
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=97.17 E-value=0.0011 Score=57.72 Aligned_cols=56 Identities=18% Similarity=0.089 Sum_probs=46.3
Q ss_pred cceeE-EeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 203 ASAVV-LSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 203 ~~~~V-~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
.++.| -+++|+++|+|++++.|++|+|+.+++|++++.|.++++.++ +.|.++..+
T Consensus 10 ~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~----------~~v~~~~~~ 66 (80)
T cd05824 10 KTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN----------STVGRWTRL 66 (80)
T ss_pred CCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC----------CEECCCcEE
Confidence 34434 368899999999999999999999999999999999998876 777776533
No 103
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=97.07 E-value=0.00039 Score=74.72 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=57.2
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
+.||+++.+|+..|+. .++++|+++++ ..+.+||+.+|+ + +|..|.+||..+
T Consensus 124 ~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~----~~~~yG~v~~d~-~---------~V~~~~Ekp~~~---------- 179 (254)
T TIGR02623 124 TYGDGVADIDIKALIAFHRKHGKKATVTAVQ----PPGRFGALDLEG-E---------QVTSFQEKPLGD---------- 179 (254)
T ss_pred EeCCeEecCCHHHHHHHHHHcCCCEEEEEec----CCCcccEEEECC-C---------eEEEEEeCCCCC----------
Confidence 3699999999999988 57999988764 346799999884 4 689999999532
Q ss_pred CCccceeeceeeecchHHHHHHh
Q 002861 77 DGRALLDTGIIAVRGKAWEELVM 99 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~~ll~ 99 (873)
..++.+|+|+|+.+.+ +++.
T Consensus 180 --~~~i~~Giyi~~~~il-~~l~ 199 (254)
T TIGR02623 180 --GGWINGGFFVLNPSVL-DLID 199 (254)
T ss_pred --CCeEEEEEEEEcHHHH-hhcc
Confidence 2368999999999877 5554
No 104
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=97.00 E-value=0.00084 Score=73.63 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=58.2
Q ss_pred CCCee-eccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 2 TGDVL-PCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 2 ~gD~i-~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
.||++ +.+|++.|+. .++++|+++.+++ ..+.+||...|+++ +|..|.|||..+
T Consensus 109 ~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~--~p~~yGvv~~d~~g---------~v~~i~EKP~~p---------- 167 (292)
T PRK15480 109 LGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN--DPERYGVVEFDQNG---------TAISLEEKPLQP---------- 167 (292)
T ss_pred ECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC--CcccCcEEEECCCC---------cEEEEEECCCCC----------
Confidence 47865 5889888876 5689999998874 46789999999877 799999999644
Q ss_pred CCccceeeceeeecchHHHH
Q 002861 77 DGRALLDTGIIAVRGKAWEE 96 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~~ 96 (873)
...++.+|+|+|+.+++..
T Consensus 168 -~s~~a~~GiY~~~~~v~~~ 186 (292)
T PRK15480 168 -KSNYAVTGLYFYDNDVVEM 186 (292)
T ss_pred -CCCEEEEEEEEEChHHHHH
Confidence 2447899999999986543
No 105
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=96.90 E-value=0.0011 Score=75.50 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=67.5
Q ss_pred cceEEEecCceeEEecCcHHHHhh---hc-cCCc-ccc-cc-ceeeecCCCcccccccceeEEeeeecCCceeCCCcEEE
Q 002861 153 RMFSYCAYELLFLHFGTSSEVLDH---LS-GDVS-GLV-GR-RHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIY 225 (873)
Q Consensus 153 ~i~~~~~p~a~F~h~gt~~e~l~~---l~-~~~~-~l~-~~-~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve 225 (873)
++..+... +.+.-+||..+|+.. +. .+.. .+. .. .....+.+.++..|..++.|.+|+|+++|.|+. .|+
T Consensus 231 ~v~~~~~~-g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~Ig~~~~I~~--~v~ 307 (380)
T PRK05293 231 KLYAYPFK-GYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVVYG--TVE 307 (380)
T ss_pred eEEEEEeC-CEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEecCEECCCCEEcc--eec
Confidence 34444443 567778999988762 11 1111 010 00 111112222334455677788899999999963 578
Q ss_pred EceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeee
Q 002861 226 DSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLW 269 (873)
Q Consensus 226 ~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~ 269 (873)
+|+|+++++||++|.|.+++|..+ +.|.+++.+.
T Consensus 308 ~s~ig~~~~I~~~~~i~~svi~~~----------~~i~~~~~i~ 341 (380)
T PRK05293 308 HSVLFQGVQVGEGSVVKDSVIMPG----------AKIGENVVIE 341 (380)
T ss_pred ceEEcCCCEECCCCEEECCEEeCC----------CEECCCeEEe
Confidence 999999999999999999999776 7777777553
No 106
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=96.85 E-value=0.0012 Score=68.53 Aligned_cols=76 Identities=25% Similarity=0.388 Sum_probs=62.8
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
+.||+++..|+.+++. +++++|++..+.+ ..+.+|++.+|+++ +|.+|.+||..+.
T Consensus 102 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~d~~~---------~v~~~~ek~~~~~--------- 161 (217)
T cd04181 102 VNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DPSRYGVVELDDDG---------RVTRFVEKPTLPE--------- 161 (217)
T ss_pred EECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CCCcceEEEEcCCC---------cEEEEEECCCCCC---------
Confidence 3699999999988875 7889999998877 67889999999876 7999999997652
Q ss_pred CCccceeeceeeecchHHHHHHh
Q 002861 77 DGRALLDTGIIAVRGKAWEELVM 99 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~~ll~ 99 (873)
....++|+|+|+.+.+ +++.
T Consensus 162 --~~~~~~Giy~~~~~~~-~~l~ 181 (217)
T cd04181 162 --SNLANAGIYIFEPEIL-DYIP 181 (217)
T ss_pred --CCEEEEEEEEECHHHH-Hhhh
Confidence 3478999999999876 5554
No 107
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=96.81 E-value=0.016 Score=64.74 Aligned_cols=65 Identities=26% Similarity=0.294 Sum_probs=47.7
Q ss_pred CCceEEEEEecCccccccceEEEeCCCCCcccccccccccceee-cCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861 18 EDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQ-KPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE 96 (873)
Q Consensus 18 ~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~-KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ 96 (873)
++++|+++.. ++.-+.+|=++.+.++ .|..+.| |=..++-+ .---+.+|+|.|+.+.|.+
T Consensus 125 ~~~~tvLt~~--~~dP~GYGRIvr~~~g---------~V~~IVE~KDA~~eek--------~I~eiNtGiy~f~~~~L~~ 185 (460)
T COG1207 125 GAAATVLTAE--LDDPTGYGRIVRDGNG---------EVTAIVEEKDASEEEK--------QIKEINTGIYAFDGAALLR 185 (460)
T ss_pred CCceEEEEEE--cCCCCCcceEEEcCCC---------cEEEEEEcCCCCHHHh--------cCcEEeeeEEEEcHHHHHH
Confidence 6888888874 5567789999998887 5666664 54444422 2335778999999999999
Q ss_pred HHhhh
Q 002861 97 LVMLS 101 (873)
Q Consensus 97 ll~~~ 101 (873)
+|..-
T Consensus 186 ~L~~l 190 (460)
T COG1207 186 ALPKL 190 (460)
T ss_pred HHHHh
Confidence 99854
No 108
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=96.77 E-value=0.00081 Score=70.40 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=62.1
Q ss_pred CCCCeeeccCCCcCcC---------CCCceEEEEEecCccc----cccceEEEeCCC-CCcccccccccccceeecCCHH
Q 002861 1 MTGDVLPCFDASTMIL---------PEDASCIITVPITLDI----ASNHGVIVAAKD-GILNENYALSLVDDLLQKPNVD 66 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~---------~~a~vtv~a~p~~~~~----a~~hGV~~~d~~-~~~~~~~~~~~v~~fl~KPs~~ 66 (873)
+.||+|+.+|+..|+. +++++|++..+++... +..+||.++|++ + +|..|.+||..+
T Consensus 110 ~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~---------~v~~~~ekp~~~ 180 (217)
T cd04197 110 VSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTS---------RLLHYEELPGSK 180 (217)
T ss_pred EeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCC---------cEEEEecccCCC
Confidence 4799999999998888 2799999988886654 445899999876 5 799999999886
Q ss_pred HHhhc---CcccC------CCccceeeceeeecchH
Q 002861 67 ELAKN---HAILD------DGRALLDTGIIAVRGKA 93 (873)
Q Consensus 67 ~l~~~---~a~~~------~~~~l~~~Gi~~f~~~~ 93 (873)
+.... ..+.. =..-|+++|+|+|+.++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~v 216 (217)
T cd04197 181 YRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDV 216 (217)
T ss_pred CccccccCHHHhcCCCcEEEECCceecCEEEeCCCC
Confidence 52110 00100 12458999999999875
No 109
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=96.77 E-value=0.0012 Score=71.81 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=66.7
Q ss_pred CCCCeeec--cCCCcCcC-------CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhc
Q 002861 1 MTGDVLPC--FDASTMIL-------PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKN 71 (873)
Q Consensus 1 ~~gD~i~~--~d~~~~~~-------~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~ 71 (873)
+.|||++. .++..++. .++.+|+...|..+ .+.+|++..+++.... ..+|.+|.|||..++-++
T Consensus 109 l~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~--~t~yGyI~~~~~~~~~----~~~V~~f~EKP~~~~a~~- 181 (274)
T cd02509 109 LPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRP--ETGYGYIEAGEKLGGG----VYRVKRFVEKPDLETAKE- 181 (274)
T ss_pred ecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCC--CCCeEEEEeCCcCCCC----ceEEeEEEECcChHHHHH-
Confidence 47899987 55544442 56788888888654 4789999998653110 116999999999865332
Q ss_pred CcccCCCccceeeceeeecchHHHHHHhhh
Q 002861 72 HAILDDGRALLDTGIIAVRGKAWEELVMLS 101 (873)
Q Consensus 72 ~a~~~~~~~l~~~Gi~~f~~~~~~~ll~~~ 101 (873)
....+..+..+|+|+|+.+.+.+.+.+.
T Consensus 182 --~~~~g~~~wNsGiyi~~~~~l~~~l~~~ 209 (274)
T cd02509 182 --YLESGNYLWNSGIFLFRAKTFLEELKKH 209 (274)
T ss_pred --HhhcCCeEEECceeeeeHHHHHHHHHHH
Confidence 2345677899999999999999999855
No 110
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=96.72 E-value=0.0014 Score=71.64 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=58.5
Q ss_pred CCCee-eccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 2 TGDVL-PCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 2 ~gD~i-~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
.||++ +..|+..|+. +++++|+++.+++ ..+++||...|+++ +|.+|.|||..++
T Consensus 105 ~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~--~p~~yGvv~~d~~g---------~V~~i~EKp~~~~--------- 164 (286)
T TIGR01207 105 LGDNIFYGHDLSDLLKRAAARESGATVFAYQVS--DPERYGVVEFDSNG---------RAISIEEKPAQPK--------- 164 (286)
T ss_pred ECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc--CHHHCceEEECCCC---------eEEEEEECCCCCC---------
Confidence 48865 5778777766 6789999999876 45789999999877 7999999996542
Q ss_pred CCccceeeceeeecchHHHHHHh
Q 002861 77 DGRALLDTGIIAVRGKAWEELVM 99 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~~ll~ 99 (873)
..++.+|+|+|+.+++ +.+.
T Consensus 165 --s~~~~~GiYi~~~~i~-~~l~ 184 (286)
T TIGR01207 165 --SNYAVTGLYFYDNRVV-EIAR 184 (286)
T ss_pred --CCEEEEEEEEEchHHH-HHHh
Confidence 3368999999999864 4443
No 111
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=96.63 E-value=0.0058 Score=70.39 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=48.3
Q ss_pred eEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 206 VVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 206 ~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
.+.+|+++++|.|+ ++.|++|+|+++++||++|.|.+++|..+ +.|++++++
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~----------~~i~~~~~i 363 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDG----------VRIGRGAVV 363 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCC----------CEECCCCEE
Confidence 46789999999999 99999999999999999999999999887 899998865
No 112
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=96.58 E-value=0.0046 Score=53.35 Aligned_cols=47 Identities=23% Similarity=0.243 Sum_probs=40.7
Q ss_pred CcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEe
Q 002861 196 TTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV 242 (873)
Q Consensus 196 ~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis 242 (873)
...+.+..++.|.+|++.+++.|++++.|++|+|+++++||++|.|.
T Consensus 20 g~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 66 (79)
T cd05787 20 GRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIP 66 (79)
T ss_pred CCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEEC
Confidence 33345556778889999999999999999999999999999999885
No 113
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=96.36 E-value=0.0021 Score=69.39 Aligned_cols=82 Identities=21% Similarity=0.217 Sum_probs=57.5
Q ss_pred CCCCeeeccC---CCcCcC----CCCceEEEEEecCccccccceEEEeCCC-CCcccccccccccceeecCCHHHHhhcC
Q 002861 1 MTGDVLPCFD---ASTMIL----PEDASCIITVPITLDIASNHGVIVAAKD-GILNENYALSLVDDLLQKPNVDELAKNH 72 (873)
Q Consensus 1 ~~gD~i~~~d---~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~-~~~~~~~~~~~v~~fl~KPs~~~l~~~~ 72 (873)
+.||+++..+ +..|+. .++++ +...+++.+..+.+|++.+|++ +... +|..|.|||+.+.
T Consensus 125 ~~gD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~------~v~~~~Ekp~~~~----- 192 (267)
T cd02541 125 LLGDDLIDSKEPCLKQLIEAYEKTGASV-IAVEEVPPEDVSKYGIVKGEKIDGDVF------KVKGLVEKPKPEE----- 192 (267)
T ss_pred EECCeEEeCCchHHHHHHHHHHHhCCCE-EEEEEcChhcCccceEEEeecCCCCce------EEeEEEECCCCCC-----
Confidence 4699998763 666665 35554 5555777777889999999863 1001 6899999997532
Q ss_pred cccCCCccceeeceeeecchHHHHHH
Q 002861 73 AILDDGRALLDTGIIAVRGKAWEELV 98 (873)
Q Consensus 73 a~~~~~~~l~~~Gi~~f~~~~~~~ll 98 (873)
+...++.+|+|+|+.+.+..+.
T Consensus 193 ----~~~~~~~~Giyi~~~~~~~~l~ 214 (267)
T cd02541 193 ----APSNLAIVGRYVLTPDIFDILE 214 (267)
T ss_pred ----CCCceEEEEEEEcCHHHHHHHH
Confidence 1235789999999998775543
No 114
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=96.28 E-value=0.0041 Score=72.04 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=49.4
Q ss_pred eeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeee
Q 002861 205 AVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLW 269 (873)
Q Consensus 205 ~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~ 269 (873)
+.+.+|+|+++|.| +++.|++|+|+++|.||++|.|.+++|..+ +.|++++.+.
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~----------~~I~~~~~i~ 376 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPD----------VNVGRSCRLR 376 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCC----------CEECCCCEEe
Confidence 46889999999999 799999999999999999999999999887 9999998663
No 115
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=96.25 E-value=0.0033 Score=69.38 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=55.8
Q ss_pred CCCCeee--------ccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCC-cccccccccccceeecCCHHH
Q 002861 1 MTGDVLP--------CFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGI-LNENYALSLVDDLLQKPNVDE 67 (873)
Q Consensus 1 ~~gD~i~--------~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~-~~~~~~~~~v~~fl~KPs~~~ 67 (873)
+.||++. ++|+.+|+. .+++ |+++.++ +..+.+||++.|.... ...+. +|.+|.|||+.+.
T Consensus 134 l~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~--~~~~~yGvv~~~~~~~~~~~~~---~V~~~~EKp~~~~ 207 (302)
T PRK13389 134 ILPDVILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPV--ADVTAYGVVDCKGVELAPGESV---PMVGVVEKPKADV 207 (302)
T ss_pred EeCcceecccccccccccHHHHHHHHHhcCCC-EEEEEEc--ccCCcceEEEecCcccccCCcc---eEEEEEECCCCCC
Confidence 3588875 378888877 4565 6666665 5578899999874210 00001 5899999998432
Q ss_pred HhhcCcccCCCccceeeceeeecchHHHHHHh
Q 002861 68 LAKNHAILDDGRALLDTGIIAVRGKAWEELVM 99 (873)
Q Consensus 68 l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ll~ 99 (873)
- ...++.+|+|+|+.+.+ +++.
T Consensus 208 ~---------~s~~~~~GiYi~~~~il-~~l~ 229 (302)
T PRK13389 208 A---------PSNLAIVGRYVLSADIW-PLLA 229 (302)
T ss_pred C---------CccEEEEEEEEECHHHH-HHHH
Confidence 0 12478999999999876 5664
No 116
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=96.21 E-value=0.0039 Score=66.20 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=57.9
Q ss_pred CCCCeee-ccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861 1 MTGDVLP-CFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL 75 (873)
Q Consensus 1 ~~gD~i~-~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~ 75 (873)
+.||+++ ..|+..++. +++++|+++.+++. .+.+|++.+|+++ +|.+|.+||..+.
T Consensus 105 ~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~g---------~v~~~~ekp~~~~-------- 165 (240)
T cd02538 105 ILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVND--PERYGVVEFDENG---------RVLSIEEKPKKPK-------- 165 (240)
T ss_pred EECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCc--hhcCceEEecCCC---------cEEEEEECCCCCC--------
Confidence 3588755 556766665 57899999988753 5689999999887 7999999996542
Q ss_pred CCCccceeeceeeecchHHHHHHh
Q 002861 76 DDGRALLDTGIIAVRGKAWEELVM 99 (873)
Q Consensus 76 ~~~~~l~~~Gi~~f~~~~~~~ll~ 99 (873)
...+.+|+|+|+.+.+ +++.
T Consensus 166 ---~~~~~~Giyi~~~~~l-~~l~ 185 (240)
T cd02538 166 ---SNYAVTGLYFYDNDVF-EIAK 185 (240)
T ss_pred ---CCeEEEEEEEECHHHH-HHHH
Confidence 3368999999999876 5554
No 117
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=96.14 E-value=0.0067 Score=68.88 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=66.8
Q ss_pred CceeEEecCcHHHHhh---hccCCcc--cc--ccceeeec-CCCcccccccceeEEeeeecCCceeCCCcEEEEceeCCC
Q 002861 161 ELLFLHFGTSSEVLDH---LSGDVSG--LV--GRRHLCSI-PATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSG 232 (873)
Q Consensus 161 ~a~F~h~gt~~e~l~~---l~~~~~~--l~--~~~~~~~~-~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~ 232 (873)
.+.+..+||..+|+.- +...... +. ....+... ...++..+..++.|.+|+|+++|+|+ +.|++|+|+++
T Consensus 233 ~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~ 310 (369)
T TIGR02092 233 TGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCIIE--GKVENSILSRG 310 (369)
T ss_pred CCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCC
Confidence 4567788999888762 1111100 00 00001110 11133456677888999999999997 46999999999
Q ss_pred eEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeee
Q 002861 233 IQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWE 270 (873)
Q Consensus 233 v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~ 270 (873)
+.||++|.|+++++..+ +.|++++.+..
T Consensus 311 ~~I~~~~~i~~sii~~~----------~~I~~~~~i~~ 338 (369)
T TIGR02092 311 VHVGKDALIKNCIIMQR----------TVIGEGAHLEN 338 (369)
T ss_pred CEECCCCEEEeeEEeCC----------CEECCCCEEEE
Confidence 99999999999999887 88888876543
No 118
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=96.09 E-value=0.0091 Score=59.58 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=45.9
Q ss_pred cccceeEE-eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeee
Q 002861 201 IAASAVVL-SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWE 270 (873)
Q Consensus 201 i~~~~~V~-~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~ 270 (873)
|..++.+. +++|+.++.|++++.|++|+|++++.|++++.+.++++..+ +.|.+++++..
T Consensus 44 I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~----------~~I~~~~~i~~ 104 (163)
T cd05636 44 IGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGEN----------VNLGAGTITAN 104 (163)
T ss_pred ECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCC----------CEECCCcEEcc
Confidence 43454454 57888888888888888888888888888888888887776 88888876543
No 119
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=96.08 E-value=0.011 Score=51.39 Aligned_cols=45 Identities=11% Similarity=0.137 Sum_probs=40.8
Q ss_pred cccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeC
Q 002861 199 SDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG 243 (873)
Q Consensus 199 ~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg 243 (873)
+.+..++.|.+|++..++.|++++.|.+|+++.++.||++|.+..
T Consensus 24 ~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~ 68 (80)
T cd05824 24 VTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLEN 68 (80)
T ss_pred CEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEec
Confidence 445578888999999999999999999999999999999999977
No 120
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.08 E-value=0.012 Score=65.65 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=54.7
Q ss_pred ccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCc--cceeeCCCeee-eeeeec
Q 002861 198 VSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDS--FRFMLPDRHCL-WEVPLV 274 (873)
Q Consensus 198 ~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~--~~~~iP~~~~i-~~v~l~ 274 (873)
|..+..++.|.+|+++.||.|.- .|+||+|+.+|+|+++|.|..++|..+. .+=++. .+++|..+++| ..+.+.
T Consensus 285 Pak~~~~s~v~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~-~IG~~~~l~~aIIDk~v~I~~g~~i~ 361 (393)
T COG0448 285 PAKFVNDSEVSNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDV-EIGEGAVLRRAIIDKNVVIGEGVVIG 361 (393)
T ss_pred CceEecCceEeeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCc-EECCCCEEEEEEeCCCcEeCCCcEEc
Confidence 34577777788899888888876 8889999999999999988888877653 111222 34788888877 445555
Q ss_pred Cc
Q 002861 275 GC 276 (873)
Q Consensus 275 ~~ 276 (873)
+.
T Consensus 362 ~~ 363 (393)
T COG0448 362 GD 363 (393)
T ss_pred CC
Confidence 55
No 121
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=96.07 E-value=0.041 Score=62.18 Aligned_cols=107 Identities=16% Similarity=0.126 Sum_probs=69.2
Q ss_pred cCcceEEEecCceeEEecCcHHHHhh---hccCCcc--cc-ccceee-e-cCCCcccccccceeEEeeeecCCceeCCCc
Q 002861 151 KQRMFSYCAYELLFLHFGTSSEVLDH---LSGDVSG--LV-GRRHLC-S-IPATTVSDIAASAVVLSSKIAHGVSIGEDS 222 (873)
Q Consensus 151 ~~~i~~~~~p~a~F~h~gt~~e~l~~---l~~~~~~--l~-~~~~~~-~-~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s 222 (873)
..+++.+..+ +.+..+||...|+.- +...... +. ....+. . ....++.-+..++.|.+|+|+++|+|+++
T Consensus 229 ~~~v~~~~~~-~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~I~~~- 306 (361)
T TIGR02091 229 EGSVQAYLFS-GYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGCIISGA- 306 (361)
T ss_pred cCceEEEeeC-CEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECCCCEECCC-
Confidence 3455555444 667789999888762 2221110 10 000010 0 01111122344457788999999999987
Q ss_pred EEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeee
Q 002861 223 LIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLW 269 (873)
Q Consensus 223 ~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~ 269 (873)
.|++|+|++++.||++|.|.++++..+ +.|++++.+.
T Consensus 307 ~v~~s~i~~~~~I~~~~~i~~sii~~~----------~~v~~~~~l~ 343 (361)
T TIGR02091 307 TVSHSVLGIRVRIGSGSTVEDSVIMGD----------VGIGRGAVIR 343 (361)
T ss_pred EEEccEECCCCEECCCCEEeeeEEeCC----------CEECCCCEEe
Confidence 889999999999999999999999776 7888877553
No 122
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=96.07 E-value=0.011 Score=61.49 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=50.4
Q ss_pred cccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 201 IAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 201 i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
|..++.+.+++|+++++|+++++|.+|+|++++.|+.+|.|.++.|.++ +.|.+++.+
T Consensus 11 I~~~a~i~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~----------~~I~~~v~I 68 (204)
T TIGR03308 11 LHPTAELTESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKF----------CSIAAMVRI 68 (204)
T ss_pred ECCCcEEeccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCC----------CEECCCCEE
Confidence 4456677788999999999999999999999999999999999998887 888888754
No 123
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=96.03 E-value=0.0067 Score=65.07 Aligned_cols=70 Identities=17% Similarity=0.313 Sum_probs=56.8
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
+.||+|+..|+.+|+. +++++|++.+. ..+.+||+.+|+++ +|..|.+||..+
T Consensus 124 ~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~----~~~~~g~v~~d~~g---------~V~~~~ekp~~~---------- 180 (253)
T cd02524 124 TYGDGVSDVNINALIEFHRSHGKLATVTAVH----PPGRFGELDLDDDG---------QVTSFTEKPQGD---------- 180 (253)
T ss_pred EcCCEEECCCHHHHHHHHHHcCCCEEEEEec----CCCcccEEEECCCC---------CEEEEEECCCCC----------
Confidence 4699999999998886 67889988763 35678999999887 799999999643
Q ss_pred CCccceeeceeeecchHHH
Q 002861 77 DGRALLDTGIIAVRGKAWE 95 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~ 95 (873)
...+.+|+|+|+.+.+.
T Consensus 181 --~~~i~~Giyi~~~~l~~ 197 (253)
T cd02524 181 --GGWINGGFFVLEPEVFD 197 (253)
T ss_pred --CceEEEEEEEECHHHHH
Confidence 12688999999988753
No 124
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=95.82 E-value=0.0092 Score=65.65 Aligned_cols=79 Identities=18% Similarity=0.367 Sum_probs=54.1
Q ss_pred CCCeeec--------cCCCcCcC----CCCceEEEEEecCccccccceEEEeCC----CCCcccccccccccceeecCCH
Q 002861 2 TGDVLPC--------FDASTMIL----PEDASCIITVPITLDIASNHGVIVAAK----DGILNENYALSLVDDLLQKPNV 65 (873)
Q Consensus 2 ~gD~i~~--------~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~----~~~~~~~~~~~~v~~fl~KPs~ 65 (873)
-||++.. +|+.+|+. +++.+ +++.+++ +..+.+||+.+|+ ++ ..++|.+|.|||..
T Consensus 130 ~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~-~~~~~~~-~~~~~yGvv~~~~~~d~~g------~v~~I~~~~EKP~~ 201 (297)
T TIGR01105 130 LPDIIIDDATADPLRYNLAAMIARFNETGRSQ-VLAKRMP-GDLSEYSVIQTKEPLDREG------KVSRIVEFIEKPDQ 201 (297)
T ss_pred ECCeeccccccccchhHHHHHHHHHHHhCCcE-EEEEEcC-CCCccceEEEecccccCCC------CeeeEeEEEECCCC
Confidence 4787764 67778876 45655 5556665 3488999999953 22 12257899999976
Q ss_pred HHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861 66 DELAKNHAILDDGRALLDTGIIAVRGKAWEE 96 (873)
Q Consensus 66 ~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ 96 (873)
++-. ..-++.+|+|+|+.+.+..
T Consensus 202 ~~~~--------~s~~~~~GiYi~~~~i~~~ 224 (297)
T TIGR01105 202 PQTL--------DSDLMAVGRYVLSADIWAE 224 (297)
T ss_pred cccC--------CcCEEEEEEEEECHHHHHH
Confidence 5311 2348999999999987653
No 125
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=95.79 E-value=0.018 Score=66.79 Aligned_cols=93 Identities=18% Similarity=0.154 Sum_probs=60.6
Q ss_pred CcceEEEecCceeEEecCcHHHHh---hhc-cCCcc--ccccc-ee-eecCCCcccccccceeEEeeeecCCceeCCCcE
Q 002861 152 QRMFSYCAYELLFLHFGTSSEVLD---HLS-GDVSG--LVGRR-HL-CSIPATTVSDIAASAVVLSSKIAHGVSIGEDSL 223 (873)
Q Consensus 152 ~~i~~~~~p~a~F~h~gt~~e~l~---~l~-~~~~~--l~~~~-~~-~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~ 223 (873)
.+++.+.. ++.+..+||...|+. .+. ..... +.... .+ .......+..+ .++.+.+|+|+++|.| +++.
T Consensus 245 ~~v~~~~~-~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~-~~~~~~~~~ig~~~~i-~~~~ 321 (429)
T PRK02862 245 YKVQSYLF-DGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKL-LDATITESIIAEGCII-KNCS 321 (429)
T ss_pred CcEEEEEe-CCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccc-cccEEEeCEECCCCEE-CCcE
Confidence 33443433 466778899998886 333 21111 11000 00 01112222234 4678889999999999 8999
Q ss_pred EEEceeCCCeEECCCcEEeCcCCC
Q 002861 224 IYDSNISSGIQIGSLSIVVGTNFP 247 (873)
Q Consensus 224 Ve~s~l~~~v~IG~~~iisg~~i~ 247 (873)
|.+|+|+++++||++|.|.++++.
T Consensus 322 i~~svi~~~~~Ig~~~~i~~svi~ 345 (429)
T PRK02862 322 IHHSVLGIRSRIESGCTIEDTLVM 345 (429)
T ss_pred EEEEEEeCCcEECCCCEEEeeEEe
Confidence 999999999999999999998874
No 126
>PRK10122 GalU regulator GalF; Provisional
Probab=95.79 E-value=0.0083 Score=66.07 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=54.8
Q ss_pred CCCeeec--------cCCCcCcC----CCCceEEEEEecCccccccceEEEeCC----CCCcccccccccccceeecCCH
Q 002861 2 TGDVLPC--------FDASTMIL----PEDASCIITVPITLDIASNHGVIVAAK----DGILNENYALSLVDDLLQKPNV 65 (873)
Q Consensus 2 ~gD~i~~--------~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~----~~~~~~~~~~~~v~~fl~KPs~ 65 (873)
.||+++. +|+.+|+. .+++++ +..+.+. ..+.+||+..|. ++ + ..+|.+|.|||..
T Consensus 130 ~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~-~~~~~~~-~~~~yGvv~~d~~~~~~g--~----v~~I~~~~EKp~~ 201 (297)
T PRK10122 130 LPDVVIDDASADPLRYNLAAMIARFNETGRSQV-LAKRMPG-DLSEYSVIQTKEPLDREG--K----VSRIVEFIEKPDQ 201 (297)
T ss_pred ECCeeccCccccccchhHHHHHHHHHHhCCcEE-EEEECCC-CCCCceEEEecCcccCCC--C----eeeEEEEEECCCC
Confidence 4888864 67788876 456644 4445443 678999999973 22 1 1157899999976
Q ss_pred HHHhhcCcccCCCccceeeceeeecchHHHHHH
Q 002861 66 DELAKNHAILDDGRALLDTGIIAVRGKAWEELV 98 (873)
Q Consensus 66 ~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ll 98 (873)
++.. ..-++.+|+|+|+.+.+..+.
T Consensus 202 ~~~~--------~s~~~~~GiYi~~~~i~~~l~ 226 (297)
T PRK10122 202 PQTL--------DSDLMAVGRYVLSADIWPELE 226 (297)
T ss_pred cccC--------CccEEEEEEEEECHHHHHHHH
Confidence 4311 123799999999999766543
No 127
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=95.64 E-value=0.018 Score=57.00 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=30.7
Q ss_pred eeecCCceeCCCcEE-----EEceeCCCeEECCCcEEeCcCCCCC
Q 002861 210 SKIAHGVSIGEDSLI-----YDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 210 Svl~~~v~v~~~s~V-----e~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
++|+++|.|+++++| .+|+|++++.||.+++|.++.|..+
T Consensus 40 i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~ 84 (155)
T cd04745 40 IVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRN 84 (155)
T ss_pred EEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCC
Confidence 567778888888887 5577888888888888887777665
No 128
>PLN02472 uncharacterized protein
Probab=95.57 E-value=0.017 Score=61.50 Aligned_cols=32 Identities=34% Similarity=0.401 Sum_probs=20.3
Q ss_pred eeecCCceeCCCcEEEEceeCCCeEECCCcEE
Q 002861 210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIV 241 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~ii 241 (873)
++|+.+|+|+++++|++|+|++++.||.+|+|
T Consensus 127 tvIG~~v~IG~~s~L~~~~Igd~v~IG~~svI 158 (246)
T PLN02472 127 TLIDRYVTIGAYSLLRSCTIEPECIIGQHSIL 158 (246)
T ss_pred cEECCCCEECCCcEECCeEEcCCCEECCCCEE
Confidence 55666666666666666666666666666655
No 129
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=95.50 E-value=0.023 Score=58.44 Aligned_cols=40 Identities=15% Similarity=0.295 Sum_probs=31.2
Q ss_pred eeecCCceeCCCcEE-----EEceeCCCeEECCCcEEeCcCCCCC
Q 002861 210 SKIAHGVSIGEDSLI-----YDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 210 Svl~~~v~v~~~s~V-----e~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
.+|+.++.|+++++| .+|+|++++.||.+|+|.++.|.++
T Consensus 48 i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~ 92 (192)
T TIGR02287 48 IVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN 92 (192)
T ss_pred eEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC
Confidence 467778888888887 4678888888888888888887765
No 130
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=95.40 E-value=0.015 Score=60.58 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=58.2
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
+.||+++..|+..++. ++++++++..+.+ ....+|++.+|+++ +|..|.+||..+
T Consensus 102 ~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~v~~d~~~---------~v~~~~ek~~~~---------- 160 (223)
T cd06915 102 LNGDTYFDVDLLALLAALRASGADATMALRRVP--DASRYGNVTVDGDG---------RVIAFVEKGPGA---------- 160 (223)
T ss_pred EECCcccCCCHHHHHHHHHhCCCcEEEEEEECC--CCCcceeEEECCCC---------eEEEEEeCCCCC----------
Confidence 3589988888777665 5788888887763 45789999998876 799999998744
Q ss_pred CCccceeeceeeecchHHHHH
Q 002861 77 DGRALLDTGIIAVRGKAWEEL 97 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~~l 97 (873)
...++++|+|+|+.+.+..+
T Consensus 161 -~~~~~~~Giy~~~~~~l~~~ 180 (223)
T cd06915 161 -APGLINGGVYLLRKEILAEI 180 (223)
T ss_pred -CCCcEEEEEEEECHHHHhhC
Confidence 23478999999999987654
No 131
>PLN02296 carbonate dehydratase
Probab=95.40 E-value=0.025 Score=61.17 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=40.2
Q ss_pred eeecCCceeCCCcEEE-----------EceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 210 SKIAHGVSIGEDSLIY-----------DSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve-----------~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
.+|+++|.|+++++|. +|+|++++.||.+|+|.+|.|..+ +.|..|+.+
T Consensus 92 I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~----------v~IG~ga~I 151 (269)
T PLN02296 92 ISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDE----------AFVGMGATL 151 (269)
T ss_pred eEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCC----------cEECCCcEE
Confidence 3789999999999985 588999999999999999988776 666666643
No 132
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=95.28 E-value=0.02 Score=59.91 Aligned_cols=73 Identities=16% Similarity=0.069 Sum_probs=56.5
Q ss_pred CCCCeeeccCCCcCcC------CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcc
Q 002861 1 MTGDVLPCFDASTMIL------PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAI 74 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~------~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~ 74 (873)
+.||+++.+|+..|+. .++.+|+...+.+ ..+.+|++.+|+++ +|..|.+||..
T Consensus 103 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~v~~d~~~---------~v~~~~~~~~~--------- 162 (221)
T cd06422 103 VNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP--GHNGVGDFSLDADG---------RLRRGGGGAVA--------- 162 (221)
T ss_pred EeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC--CCCCcceEEECCCC---------cEeecccCCCC---------
Confidence 4699999999988886 3455666655543 56788999999877 78999999832
Q ss_pred cCCCccceeeceeeecchHHHHHH
Q 002861 75 LDDGRALLDTGIIAVRGKAWEELV 98 (873)
Q Consensus 75 ~~~~~~l~~~Gi~~f~~~~~~~ll 98 (873)
.++.+|+|+|+.+.+..+.
T Consensus 163 -----~~~~~Giyi~~~~~l~~l~ 181 (221)
T cd06422 163 -----PFTFTGIQILSPELFAGIP 181 (221)
T ss_pred -----ceEEEEEEEEcHHHHhhCC
Confidence 3689999999998777654
No 133
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=95.28 E-value=0.048 Score=46.43 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=27.2
Q ss_pred ccceeEEe-eeecCCceeCCCcEEEEc---------eeCCCeEECCCcEEe
Q 002861 202 AASAVVLS-SKIAHGVSIGEDSLIYDS---------NISSGIQIGSLSIVV 242 (873)
Q Consensus 202 ~~~~~V~~-Svl~~~v~v~~~s~Ve~s---------~l~~~v~IG~~~iis 242 (873)
..++.|.. ++|++++.|++++.|.++ +|++++.||.+|+|.
T Consensus 10 ~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~ 60 (78)
T cd00208 10 HPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60 (78)
T ss_pred CCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEe
Confidence 33445554 788888888888888874 555556666665553
No 134
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=95.11 E-value=0.084 Score=52.26 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=30.4
Q ss_pred cccceeEEee----eecCCceeCCCcEEEE-----ceeCCCeEECCCcEEeCcCCCCC
Q 002861 201 IAASAVVLSS----KIAHGVSIGEDSLIYD-----SNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 201 i~~~~~V~~S----vl~~~v~v~~~s~Ve~-----s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
|..++.|..+ +|++++.|+++++|.. ++|++++.|+.+|+|.++.|..+
T Consensus 27 I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~ 84 (154)
T cd04650 27 VWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNY 84 (154)
T ss_pred EcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCC
Confidence 4444444443 6677777777777765 56667777777777666665544
No 135
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=95.09 E-value=0.042 Score=54.19 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=22.2
Q ss_pred eecCCceeCCCcEEEEc-----eeCCCeEECCCcEEeCcCCCCC
Q 002861 211 KIAHGVSIGEDSLIYDS-----NISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve~s-----~l~~~v~IG~~~iisg~~i~~~ 249 (873)
+|++++.|+++++|..+ +|++++.|+.+|+|.++.+..+
T Consensus 40 ~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~ 83 (153)
T cd04645 40 RIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN 83 (153)
T ss_pred EECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC
Confidence 55556666666655553 5556666666666555555443
No 136
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=95.01 E-value=0.025 Score=59.75 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=56.2
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
+.||+++..|+..++. .++++++...+.+- .+.+|+.++|+ + +|..|.+||..+
T Consensus 104 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~d~-~---------~v~~~~ek~~~~---------- 161 (236)
T cd04189 104 YLGDNLIQEGISPLVRDFLEEDADASILLAEVED--PRRFGVAVVDD-G---------RIVRLVEKPKEP---------- 161 (236)
T ss_pred EECCeecCcCHHHHHHHHHhcCCceEEEEEECCC--cccceEEEEcC-C---------eEEEEEECCCCC----------
Confidence 3689999999888764 67888888887653 46789988874 3 589999999643
Q ss_pred CCccceeeceeeecchHHHH
Q 002861 77 DGRALLDTGIIAVRGKAWEE 96 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~~ 96 (873)
....+.+|+|+|+.+.+..
T Consensus 162 -~~~~~~~Giy~~~~~~~~~ 180 (236)
T cd04189 162 -PSNLALVGVYAFTPAIFDA 180 (236)
T ss_pred -CCCEEEEEEEEeCHHHHHH
Confidence 2346899999999887654
No 137
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=94.99 E-value=0.055 Score=53.92 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=45.4
Q ss_pred CcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCC
Q 002861 196 TTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPE 248 (873)
Q Consensus 196 ~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~ 248 (873)
...+.|..++.+.+|+|+.++.|+.++.+++|+|++++.||++|.+.+...+.
T Consensus 57 g~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~ 109 (163)
T cd05636 57 GDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFDD 109 (163)
T ss_pred CCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcCC
Confidence 33355667788899999999999999999999999999999999998876543
No 138
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=94.93 E-value=0.052 Score=54.48 Aligned_cols=40 Identities=23% Similarity=0.442 Sum_probs=29.5
Q ss_pred eeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861 210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
++|+.+|.|+.++.|.+++|++++.||.++.|.++.+..+
T Consensus 83 ~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~~~i~~~ 122 (167)
T cd00710 83 AYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDGVEIPPG 122 (167)
T ss_pred EEECCCCEECCCCEEECCEECCCCEEcCCCEEeCCEeCCC
Confidence 6777777777777777777777777777777776655544
No 139
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=94.88 E-value=0.044 Score=54.25 Aligned_cols=51 Identities=16% Similarity=0.333 Sum_probs=40.3
Q ss_pred cccccceeE-----EeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeC-cCCCCC
Q 002861 199 SDIAASAVV-----LSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPEE 249 (873)
Q Consensus 199 ~~i~~~~~V-----~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg-~~i~~~ 249 (873)
+.|..++.| .+|+|+.++.|+++++|++|+|++++.||.+|+|.. +.|.++
T Consensus 46 ~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~ 102 (155)
T cd04745 46 ANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEE 102 (155)
T ss_pred CEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEEeCCCEECCC
Confidence 334445444 358999999999999999999999999999999865 665554
No 140
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=94.87 E-value=0.036 Score=62.55 Aligned_cols=42 Identities=29% Similarity=0.289 Sum_probs=36.3
Q ss_pred eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCC
Q 002861 209 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEA 250 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~ 250 (873)
++.+.+.+.|++++.|.+|+|.+++.||++|.|.++.+..+.
T Consensus 248 ~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~i~~~~ 289 (353)
T TIGR01208 248 ESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYT 289 (353)
T ss_pred CCEEcCCEEECCCCEEeCCEEECCcEECCCCEEcCcEECCCC
Confidence 456778899999999999999999999999999888777653
No 141
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=94.77 E-value=0.046 Score=63.68 Aligned_cols=49 Identities=29% Similarity=0.423 Sum_probs=39.4
Q ss_pred cccceeEE-eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861 201 IAASAVVL-SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 201 i~~~~~V~-~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
|..++.|. +++|+++|.|+++++|.+|+|++++.|+++|.|.++.|.++
T Consensus 270 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~ 319 (451)
T TIGR01173 270 IDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEG 319 (451)
T ss_pred EcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCC
Confidence 33344443 47889999999999999999999999999999999888776
No 142
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=94.73 E-value=0.032 Score=65.41 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=61.0
Q ss_pred CCCCeeeccC--CCcCcC-------CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhc
Q 002861 1 MTGDVLPCFD--ASTMIL-------PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKN 71 (873)
Q Consensus 1 ~~gD~i~~~d--~~~~~~-------~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~ 71 (873)
+.|||++..+ +..++. .++-+|+...| ..-.+.+|++..+++-.++..+ +|..|.|||+.++-++
T Consensus 110 l~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p--~~p~t~YGyI~~~~~~~~~~~~---~V~~f~EKP~~~~a~~- 183 (468)
T TIGR01479 110 LAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVP--THPETGYGYIRRGEPLAGEDVY---QVQRFVEKPDLATAQA- 183 (468)
T ss_pred ecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecC--CCCCCCceEEEeCCccCCCCce---EEeEEEECCChHHHHH-
Confidence 4789988643 343432 24445544443 3456789999998531000011 6999999998765221
Q ss_pred CcccCCCccceeeceeeecchHHHHHHhhh
Q 002861 72 HAILDDGRALLDTGIIAVRGKAWEELVMLS 101 (873)
Q Consensus 72 ~a~~~~~~~l~~~Gi~~f~~~~~~~ll~~~ 101 (873)
....|..+..+|+|+|+.+.+.+.+..+
T Consensus 184 --~l~~g~~~wNsGif~~~~~~ll~~l~~~ 211 (468)
T TIGR01479 184 --YLESGDYYWNSGMFLFRASRYLAELKKH 211 (468)
T ss_pred --HHhcCCeEEEeeEEEEEHHHHHHHHHHH
Confidence 2345677999999999999999999855
No 143
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=94.67 E-value=0.061 Score=53.03 Aligned_cols=51 Identities=20% Similarity=0.375 Sum_probs=40.3
Q ss_pred cccccceeEEe-----eeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCCCC
Q 002861 199 SDIAASAVVLS-----SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPEE 249 (873)
Q Consensus 199 ~~i~~~~~V~~-----Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~~~ 249 (873)
+.|..++.|.. ++|+.++.|+.++.|++++|++++.||.++.|. ++.+.++
T Consensus 45 ~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~~~ig~~ 101 (153)
T cd04645 45 TNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKG 101 (153)
T ss_pred CEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcCCCEECCC
Confidence 34445555555 499999999999999999999999999999997 5655554
No 144
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=94.58 E-value=0.038 Score=56.82 Aligned_cols=42 Identities=10% Similarity=0.235 Sum_probs=35.7
Q ss_pred EeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeC-cCCCCC
Q 002861 208 LSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPEE 249 (873)
Q Consensus 208 ~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg-~~i~~~ 249 (873)
.+|+|+.++.|+.+++|++|+|++++.||.+|+|.. +.|..+
T Consensus 68 ~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~ 110 (192)
T TIGR02287 68 QDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGEN 110 (192)
T ss_pred CCCeECCCCEECCCCEEcCCEECCCCEECCCcccCCCeEECCC
Confidence 368999999999999999999999999999998843 555444
No 145
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=94.48 E-value=0.041 Score=64.32 Aligned_cols=41 Identities=32% Similarity=0.443 Sum_probs=37.7
Q ss_pred eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861 209 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
+++|+++|.|+++|+|++|+|++++.|+++|.|.++.|..+
T Consensus 287 ~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~ 327 (456)
T PRK14356 287 ASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG 327 (456)
T ss_pred ceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc
Confidence 57899999999999999999999999999999999998876
No 146
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=94.42 E-value=0.069 Score=54.73 Aligned_cols=49 Identities=31% Similarity=0.443 Sum_probs=31.7
Q ss_pred ccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCCC
Q 002861 200 DIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE 248 (873)
Q Consensus 200 ~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~~ 248 (873)
.|..++.|.+++|+.++.|+++++|++|+|+.++.||.+|.|. ++.+..
T Consensus 41 ~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~ 90 (193)
T cd03353 41 VIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGE 90 (193)
T ss_pred EECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECC
Confidence 3445556666677777777777777777777777777777665 444433
No 147
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=94.37 E-value=0.025 Score=41.15 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=26.5
Q ss_pred eeeecCCceeCCCcE-EEEceeCCCeEECCCcEEeC
Q 002861 209 SSKIAHGVSIGEDSL-IYDSNISSGIQIGSLSIVVG 243 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~-Ve~s~l~~~v~IG~~~iisg 243 (873)
+++|+.++.|++++. ..+++|++++.||.+|.|.|
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~g 36 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIGG 36 (36)
T ss_dssp TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEES
T ss_pred CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEECC
Confidence 356888888888888 45677788888888888865
No 148
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=94.32 E-value=0.082 Score=54.51 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=20.0
Q ss_pred eecCCceeCCCcEEEE-----ceeCCCeEECCCcEEeCcCCCCC
Q 002861 211 KIAHGVSIGEDSLIYD-----SNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve~-----s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
+|+.+|.|+++++|.. |+|++++.||.+|+|.++.|..+
T Consensus 51 ~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~ 94 (196)
T PRK13627 51 IVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRD 94 (196)
T ss_pred EECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCC
Confidence 4444555555555422 44555555555555555555443
No 149
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=94.28 E-value=0.045 Score=63.69 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=41.2
Q ss_pred cccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCC
Q 002861 201 IAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNF 246 (873)
Q Consensus 201 i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i 246 (873)
.+.++.|.+|+|+++|.|+ ++.|++|+|++++.||++|.|.++++
T Consensus 307 ~~~~~~i~~s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii 351 (436)
T PLN02241 307 KIEDCRITDSIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVM 351 (436)
T ss_pred EecCCeEEEeEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEE
Confidence 3357778899999999999 99999999999999999999998887
No 150
>PLN02296 carbonate dehydratase
Probab=94.15 E-value=0.065 Score=57.96 Aligned_cols=41 Identities=15% Similarity=0.318 Sum_probs=35.9
Q ss_pred eeeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCCCC
Q 002861 209 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPEE 249 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~~~ 249 (873)
+|+|+.+|.|+.+|+|..|.|++++.||.+|+|. ++.|.++
T Consensus 119 ~siIG~~v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~ 160 (269)
T PLN02296 119 PTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKH 160 (269)
T ss_pred CcEeCCCCEECCCceecCCEECCCcEECCCcEECCCeEECCC
Confidence 5899999999999999999999999999999884 5555555
No 151
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=94.10 E-value=0.052 Score=56.55 Aligned_cols=70 Identities=17% Similarity=0.342 Sum_probs=54.5
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
+.||.++..++..|+. +++++++...+.+. .+.+|++..|. + +|.+|.+||...
T Consensus 101 ~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~d~-~---------~v~~~~ek~~~~---------- 158 (220)
T cd06426 101 MNGDILTNLNYEHLLDFHKENNADATVCVREYEV--QVPYGVVETEG-G---------RITSIEEKPTHS---------- 158 (220)
T ss_pred EcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--CCcceEEEECC-C---------EEEEEEECCCCC----------
Confidence 4689999888888876 66888888877543 36799999885 5 689999998542
Q ss_pred CCccceeeceeeecchHHH
Q 002861 77 DGRALLDTGIIAVRGKAWE 95 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~~~~ 95 (873)
.++.+|+|+|+.+.+.
T Consensus 159 ---~~~~~Giy~~~~~~~~ 174 (220)
T cd06426 159 ---FLVNAGIYVLEPEVLD 174 (220)
T ss_pred ---CeEEEEEEEEcHHHHh
Confidence 2578999999998754
No 152
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=93.98 E-value=0.024 Score=59.33 Aligned_cols=87 Identities=11% Similarity=0.112 Sum_probs=59.6
Q ss_pred CCCCeeeccCCCcCc----C--CCCceEEEEEecCccc-------cccceEEEeCCCCCcccccccccccceeecCCHHH
Q 002861 1 MTGDVLPCFDASTMI----L--PEDASCIITVPITLDI-------ASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDE 67 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~----~--~~a~vtv~a~p~~~~~-------a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~ 67 (873)
++||+|+.+|+..++ . +++++|+.....+... +++.+++++|++.... ++..+.+||....
T Consensus 109 ~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~------~~~~~~~~~~~~~ 182 (216)
T cd02507 109 LSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRL------LLLHYEEDLDEDL 182 (216)
T ss_pred EeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCCCcEEEEcCCCCce------EEEechhhcCcCc
Confidence 479999999999999 4 5777777777765544 8889999999984211 5677888876532
Q ss_pred Hh--hcCccc-CC----CccceeeceeeecchH
Q 002861 68 LA--KNHAIL-DD----GRALLDTGIIAVRGKA 93 (873)
Q Consensus 68 l~--~~~a~~-~~----~~~l~~~Gi~~f~~~~ 93 (873)
.- ....+. .| ..-|+|.|+|+|+..+
T Consensus 183 ~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~V 215 (216)
T cd02507 183 ELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDV 215 (216)
T ss_pred ccccCHHHHhcCCCEEEEcCcccccEEEecCcC
Confidence 11 000111 11 2348999999999764
No 153
>PLN02472 uncharacterized protein
Probab=93.79 E-value=0.088 Score=56.20 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=39.9
Q ss_pred eeecCCceeCCCcEEE-----------EceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCee
Q 002861 210 SKIAHGVSIGEDSLIY-----------DSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC 267 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve-----------~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~ 267 (873)
.+|+.++.|+++|+|. +++|+++++||.+|+|.+|.|..+ +.|-.++.
T Consensus 99 I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~----------v~IG~~sv 157 (246)
T PLN02472 99 ITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPE----------CIIGQHSI 157 (246)
T ss_pred eEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCC----------CEECCCCE
Confidence 3688888899999884 689999999999999999998776 66666653
No 154
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=93.77 E-value=0.071 Score=62.37 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=30.8
Q ss_pred eecCCceeCCCcEEE-EceeCCCeEECCCcEEeCcCCCCC
Q 002861 211 KIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
.++++|.|+++++|+ +++|++++.||.+|+|.++.|..+
T Consensus 267 ~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~ 306 (456)
T PRK09451 267 THGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDD 306 (456)
T ss_pred EECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCC
Confidence 466778888888887 577888888888888888777665
No 155
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=93.64 E-value=0.19 Score=51.57 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=26.7
Q ss_pred cccceeEEeeeecCCceeCCCcEEE-EceeCCCeEECCCcEEeCcCCCC
Q 002861 201 IAASAVVLSSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTNFPE 248 (873)
Q Consensus 201 i~~~~~V~~Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg~~i~~ 248 (873)
|..++.+.+|+++.++.|++++.|. +++|++++.||+++.+.+..+.+
T Consensus 59 I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~ 107 (193)
T cd03353 59 IKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGE 107 (193)
T ss_pred EcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcC
Confidence 3344445555666666666666664 45555666666655555555444
No 156
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=93.52 E-value=0.14 Score=50.97 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=26.0
Q ss_pred eeecCCceeCCCcEEEEceeCCCeEECCCcEE-eCcCCCC
Q 002861 210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIV-VGTNFPE 248 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~ii-sg~~i~~ 248 (873)
++|+.++.|++++++.+|.|+.++.||++|.| .++.+..
T Consensus 73 v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~ 112 (161)
T cd03359 73 LHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKD 112 (161)
T ss_pred eEECCccEECCCCEEEeeEEcCCcEECCCCEEcCCCEECC
Confidence 35777777777777777777777777777766 3344433
No 157
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=93.50 E-value=0.075 Score=54.81 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=35.8
Q ss_pred EEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeC-cCCCCC
Q 002861 207 VLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPEE 249 (873)
Q Consensus 207 V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg-~~i~~~ 249 (873)
..+|+|+.++.|+.+++|++|+|++++.||.+++|.. +.|.++
T Consensus 69 ~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~ 112 (196)
T PRK13627 69 DTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEE 112 (196)
T ss_pred CCCCEECCCCEECCCcEEeeEEECCCCEECcCCccCCCcEECCC
Confidence 3478999999999999999999999999999998843 444443
No 158
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=93.41 E-value=0.19 Score=52.16 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=43.5
Q ss_pred CCcccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCc
Q 002861 195 ATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGT 244 (873)
Q Consensus 195 ~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~ 244 (873)
+..+..|..++.|.+|+|+.++.|++++.|.+|.|+.++.|+.++.|...
T Consensus 22 IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~ 71 (204)
T TIGR03308 22 LGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINAT 71 (204)
T ss_pred eCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCC
Confidence 34445567778888999999999999999999999999999999999765
No 159
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=93.33 E-value=0.097 Score=55.03 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=55.3
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILD 76 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~ 76 (873)
+.||+++..|+..++. .+++.++++++. ...++|++.+|+++ +|..|.+|+..
T Consensus 104 ~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~v~~d~~~---------~v~~~~ek~~~----------- 160 (231)
T cd04183 104 FNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRWSYVKLDENG---------RVIETAEKEPI----------- 160 (231)
T ss_pred EecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCeEEEEECCCC---------CEEEeEEcCCC-----------
Confidence 3589999999888875 457788888775 45579999999877 78899888521
Q ss_pred CCccceeeceeeecch-HHHHHHh
Q 002861 77 DGRALLDTGIIAVRGK-AWEELVM 99 (873)
Q Consensus 77 ~~~~l~~~Gi~~f~~~-~~~~ll~ 99 (873)
...+.+|+|+|+.+ .+.+++.
T Consensus 161 --~~~~~~Giy~~~~~~~~~~~l~ 182 (231)
T cd04183 161 --SDLATAGLYYFKSGSLFVEAAK 182 (231)
T ss_pred --CCccEeEEEEECcHHHHHHHHH
Confidence 23578999999987 4444443
No 160
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=93.32 E-value=0.21 Score=46.66 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=29.7
Q ss_pred eeeecCCceeCCCcEE-EEceeCCCeEECCCcEEeCcCCC
Q 002861 209 SSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVVGTNFP 247 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~V-e~s~l~~~v~IG~~~iisg~~i~ 247 (873)
+++|++++.|+++++| .+|+|++++.|+.+|++.+..+.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~ 55 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYP 55 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCC
Confidence 5677888888888888 46888888888888887765543
No 161
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=93.16 E-value=0.13 Score=47.16 Aligned_cols=47 Identities=15% Similarity=-0.028 Sum_probs=27.7
Q ss_pred eeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
+.|+.+|.|+. .|++|+|++++.|+.+|.|.+++|..+ +.|.+++++
T Consensus 48 v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~----------v~ig~~~~~ 94 (101)
T cd05635 48 TTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSW----------CNLGAGTNN 94 (101)
T ss_pred CEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCC----------CEECCCcee
Confidence 34444444432 245777777777777777766666655 666666643
No 162
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=93.07 E-value=0.2 Score=50.58 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=19.2
Q ss_pred eeecCCceeCCCcEEE-EceeCCCeEECCCcEE
Q 002861 210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIV 241 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~ii 241 (873)
++|+++++|+++++|. +|+|+.++.||++|.|
T Consensus 109 ~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i 141 (197)
T cd03360 109 AVINPDARIGDNVIINTGAVIGHDCVIGDFVHI 141 (197)
T ss_pred CEECCCCEECCCeEECCCCEECCCCEECCCCEE
Confidence 5556666666666663 5666655666655555
No 163
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=93.06 E-value=0.19 Score=49.68 Aligned_cols=50 Identities=14% Similarity=0.372 Sum_probs=39.3
Q ss_pred cccccceeEEe-----eeecCCceeCCCcEEEEceeCCCeEECCCcEEeC-cCCCC
Q 002861 199 SDIAASAVVLS-----SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPE 248 (873)
Q Consensus 199 ~~i~~~~~V~~-----Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg-~~i~~ 248 (873)
+.|..++.|.. ++|+.++.|++++.|+++.|++++.||.+|+|.. +.+..
T Consensus 46 ~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~ 101 (154)
T cd04650 46 SNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIGD 101 (154)
T ss_pred CEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEeCCCEECC
Confidence 44555555543 7899999999999999999999999999999854 44433
No 164
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=93.05 E-value=0.18 Score=50.48 Aligned_cols=38 Identities=13% Similarity=-0.000 Sum_probs=23.5
Q ss_pred ecCCceeCCCcEEEEceeCCCeEECCCcEE-eCcCCCCC
Q 002861 212 IAHGVSIGEDSLIYDSNISSGIQIGSLSIV-VGTNFPEE 249 (873)
Q Consensus 212 l~~~v~v~~~s~Ve~s~l~~~v~IG~~~ii-sg~~i~~~ 249 (873)
|++++.++.++.|.+++|++++.||.+|+| .++.|..+
T Consensus 69 IG~~~~i~~~~~i~~~~IGd~~~Ig~~a~I~~gv~Ig~~ 107 (164)
T cd04646 69 IGSNNVFEVGCKCEALKIGNNNVFESKSFVGKNVIITDG 107 (164)
T ss_pred ECCCCEECCCcEEEeeEECCCCEEeCCCEECCCCEECCC
Confidence 555666666666777777777777777766 33444443
No 165
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=92.87 E-value=0.19 Score=42.64 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=30.8
Q ss_pred eeecCCceeCCCcEEEE-ceeCCCeEECCCcEEeCcCC
Q 002861 210 SKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVVGTNF 246 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~iisg~~i 246 (873)
|++++++.|+++++|.. +.|++++.|+.+|.|.+...
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~ 38 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATG 38 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccC
Confidence 46788888999898887 88999999999999887543
No 166
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=92.73 E-value=0.14 Score=47.87 Aligned_cols=6 Identities=0% Similarity=-0.136 Sum_probs=2.2
Q ss_pred eeeCCC
Q 002861 260 FMLPDR 265 (873)
Q Consensus 260 ~~iP~~ 265 (873)
+.|..+
T Consensus 74 ~~Ig~~ 79 (119)
T cd03358 74 ASIGAN 79 (119)
T ss_pred cEECcC
Confidence 333333
No 167
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=92.70 E-value=0.17 Score=58.66 Aligned_cols=50 Identities=22% Similarity=0.183 Sum_probs=33.5
Q ss_pred cccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861 199 SDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 199 ~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
..|..++.|.+|+|+++|.|++ ++|++|+|+++++|+.+|.|.++.|..+
T Consensus 272 ~~I~~~~~i~~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~ 321 (430)
T PRK14359 272 VRILGKSKIENSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNF 321 (430)
T ss_pred CEECCCeEEEeeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCc
Confidence 3444555566677777777755 6667777777777777777777766554
No 168
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=92.59 E-value=0.16 Score=59.22 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=45.1
Q ss_pred ceeeecCCCcccccccceeEEeeeecCCceeCCCcEEE-EceeCCCeEECCCcEEeCcCCCCC
Q 002861 188 RHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 188 ~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
..+.++.+.. ++.+..+.+.+|+|+.+|.|++++.|. +|+|++++.||+++.|.++++.++
T Consensus 293 ~~I~~~~I~~-~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~ 354 (450)
T PRK14360 293 SLIENSQIGE-NVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEG 354 (450)
T ss_pred cEEEEEEEcC-CCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCC
Confidence 3344444444 344456677888999999999999997 688899999999888887777654
No 169
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=92.53 E-value=0.14 Score=54.30 Aligned_cols=34 Identities=18% Similarity=0.472 Sum_probs=18.5
Q ss_pred eeecCCceeCCCcEEE-EceeCCCeEECCCcEEeC
Q 002861 210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVG 243 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg 243 (873)
++|+.+|.|++++.|. +|+|++++.||.+|.|.+
T Consensus 117 ~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~ 151 (231)
T TIGR03532 117 AEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAG 151 (231)
T ss_pred eEECCCCEEccccccCCCcEECCCcEEcCCcEEcc
Confidence 3445555555555553 555666666666666653
No 170
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=92.11 E-value=0.24 Score=57.90 Aligned_cols=49 Identities=27% Similarity=0.493 Sum_probs=26.6
Q ss_pred ccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCCCC
Q 002861 200 DIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPEE 249 (873)
Q Consensus 200 ~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~~~ 249 (873)
.|..++.|.+|+|+.+|.|+ ++.|.+|+|+.++.||++|.|. ++.|..+
T Consensus 291 ~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~ 340 (458)
T PRK14354 291 VIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLRPGSVIGEE 340 (458)
T ss_pred EECCCcEEeccEECCCCEEE-EEEEeCCEECCCcEECCceEecCCCEEeCC
Confidence 33344555555566666555 3455566666666666666655 4444433
No 171
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=91.93 E-value=0.19 Score=59.18 Aligned_cols=40 Identities=30% Similarity=0.491 Sum_probs=36.1
Q ss_pred eeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861 210 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
++|+++|+|+++|.|++|+|++++.|+.++.|.++++.++
T Consensus 289 v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~ 328 (481)
T PRK14358 289 TRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAG 328 (481)
T ss_pred cEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCc
Confidence 3589999999999999999999999999999999988776
No 172
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=91.93 E-value=0.12 Score=54.23 Aligned_cols=79 Identities=14% Similarity=0.068 Sum_probs=55.4
Q ss_pred CCCCeeeccCC-CcCcCCCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCc
Q 002861 1 MTGDVLPCFDA-STMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGR 79 (873)
Q Consensus 1 ~~gD~i~~~d~-~~~~~~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~ 79 (873)
+.||+++..+. ..+...+++.|++..+.+......+|+...|. + ++..+.+||..++ ..
T Consensus 99 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~v~~~~~k~~~~~----------~~ 158 (229)
T cd02523 99 LEGDVVFDPSILERLLSSPADNAILVDKKTKEWEDEYVKDLDDA-G---------VLLGIISKAKNLE----------EI 158 (229)
T ss_pred EeCCEecCHHHHHHHHcCCCCCeEEEccCcccccccceeeecCc-c---------ceEeecccCCCcc----------hh
Confidence 36899886654 22334778899888875555666677654443 3 5889999997653 23
Q ss_pred cceeeceeeecchHHHHHHh
Q 002861 80 ALLDTGIIAVRGKAWEELVM 99 (873)
Q Consensus 80 ~l~~~Gi~~f~~~~~~~ll~ 99 (873)
....+|+|+|+.+.+..+..
T Consensus 159 ~~~~~Giy~~~~~~~~~l~~ 178 (229)
T cd02523 159 QGEYVGISKFSPEDADRLAE 178 (229)
T ss_pred ceEEEeEEEECHHHHHHHHH
Confidence 47899999999998776654
No 173
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=91.91 E-value=0.27 Score=57.55 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=31.4
Q ss_pred eeecCCceeCCCcEEE-EceeCCCeEECCCcEEeCcCCCCC
Q 002861 210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
..+++++.|++++.|+ +++|++++.||.+|+|.++.|..+
T Consensus 269 v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~ 309 (459)
T PRK14355 269 VVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDD 309 (459)
T ss_pred eEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCC
Confidence 3467777777777776 477889999999999998888776
No 174
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=91.91 E-value=0.24 Score=53.10 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=14.2
Q ss_pred eeecCCceeCCCcEEEE-ceeCCCeEECCCcEE
Q 002861 210 SKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIV 241 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~ii 241 (873)
+.+..++.|++++.|.. ++|+++++||+||.|
T Consensus 124 ~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I 156 (269)
T TIGR00965 124 SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHL 156 (269)
T ss_pred eEEcCCcEECCCCEECCCcEECCCCEECCCCEE
Confidence 33444444444444443 444444444444444
No 175
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=91.87 E-value=0.32 Score=48.47 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=38.7
Q ss_pred eeecCCceeCCCcEEEEc-------------eeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 210 SKIAHGVSIGEDSLIYDS-------------NISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve~s-------------~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
..|+.+|.|+++++|..+ +|++++.||.+|+|.++.+..+ +.|.+++.+
T Consensus 43 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~----------v~Ig~~~~I 104 (161)
T cd03359 43 VSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSY----------VHIGKNCVI 104 (161)
T ss_pred eEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCC----------cEECCCCEE
Confidence 578899999999998854 6888899999999988887776 666666543
No 176
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=91.87 E-value=0.22 Score=50.00 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=15.9
Q ss_pred CceeCCCcEE-EEceeCCCeEECCCcEE-eCcCC
Q 002861 215 GVSIGEDSLI-YDSNISSGIQIGSLSIV-VGTNF 246 (873)
Q Consensus 215 ~v~v~~~s~V-e~s~l~~~v~IG~~~ii-sg~~i 246 (873)
.+.|+++++| .+|.|+++++||++|+| .++.+
T Consensus 118 ~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV 151 (169)
T cd03357 118 PITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVV 151 (169)
T ss_pred CcEeCCCEEECCCCEEeCCCEECCCCEECCCCEE
Confidence 4455555555 34444555555555555 34443
No 177
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=91.83 E-value=0.66 Score=45.22 Aligned_cols=38 Identities=21% Similarity=0.437 Sum_probs=26.3
Q ss_pred ceeEEe------eeecCCceeCCCcEEEEceeCCC----eEECCCcEEe
Q 002861 204 SAVVLS------SKIAHGVSIGEDSLIYDSNISSG----IQIGSLSIVV 242 (873)
Q Consensus 204 ~~~V~~------Svl~~~v~v~~~s~Ve~s~l~~~----v~IG~~~iis 242 (873)
..+++| ++++.+|.|++++.|. +.+.++ +.||++|.|-
T Consensus 36 ~~~iIn~~ig~~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~~~IG 83 (147)
T cd04649 36 GNCMVEGRISSGVIVGKGSDVGGGASIM-GTLSGGGNNVISIGKRCLLG 83 (147)
T ss_pred CCeEECCcccCCEEECCCCEECCCCEEE-EECCCCcccCEEECCCCEEC
Confidence 345656 7888888888888888 665555 6666655554
No 178
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=91.39 E-value=0.32 Score=52.22 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=25.0
Q ss_pred eeecCCceeCCCcEE---------EEceeCCCeEECCCcEEe-CcCCCCC
Q 002861 210 SKIAHGVSIGEDSLI---------YDSNISSGIQIGSLSIVV-GTNFPEE 249 (873)
Q Consensus 210 Svl~~~v~v~~~s~V---------e~s~l~~~v~IG~~~iis-g~~i~~~ 249 (873)
++|+.+|.|+.++.| ..++|+++|.||.||.|. |+.|.++
T Consensus 148 v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~g 197 (269)
T TIGR00965 148 AQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEG 197 (269)
T ss_pred CEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCC
Confidence 355556666665555 346777777777777775 5555544
No 179
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=91.39 E-value=0.32 Score=56.69 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=36.5
Q ss_pred eeeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCCCC
Q 002861 209 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPEE 249 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~~~ 249 (873)
++.|+.+|.|++++.|++|+|+.+++||.+|+|. ++.|..+
T Consensus 286 ~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~ 327 (446)
T PRK14353 286 GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEG 327 (446)
T ss_pred CCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCC
Confidence 3679999999999999999999999999999997 6766654
No 180
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=91.21 E-value=0.59 Score=46.85 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=28.5
Q ss_pred eeecCCceeCCCcEEEE-ceeCCCeEECCCcEEeCcCCCCC
Q 002861 210 SKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
..|+.++.|++++.|.. ++|++++.||.+|.|.++.|.++
T Consensus 65 v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~ 105 (167)
T cd00710 65 VWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDN 105 (167)
T ss_pred EEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCC
Confidence 45667777777777765 77777777777777776666555
No 181
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=91.16 E-value=0.28 Score=49.42 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=11.7
Q ss_pred ecCCceeCCCcEEE-EceeCCCeEECCCcEE
Q 002861 212 IAHGVSIGEDSLIY-DSNISSGIQIGSLSIV 241 (873)
Q Consensus 212 l~~~v~v~~~s~Ve-~s~l~~~v~IG~~~ii 241 (873)
|+.++.|++++.|+ +|+|+.++.|+.+|+|
T Consensus 117 ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i 147 (197)
T cd03360 117 IGDNVIINTGAVIGHDCVIGDFVHIAPGVVL 147 (197)
T ss_pred ECCCeEECCCCEECCCCEECCCCEECCCCEE
Confidence 33344444344432 2334444444444433
No 182
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=90.86 E-value=0.42 Score=47.84 Aligned_cols=40 Identities=15% Similarity=0.032 Sum_probs=28.2
Q ss_pred eeecCCceeCCCcEEEEce-----------eCCCeEECCCcEEeCcCCCCC
Q 002861 210 SKIAHGVSIGEDSLIYDSN-----------ISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve~s~-----------l~~~v~IG~~~iisg~~i~~~ 249 (873)
++|+.+|.|+++++|.++. |++++.|+.+|.|.++.|..+
T Consensus 39 i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~ 89 (164)
T cd04646 39 IIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNN 89 (164)
T ss_pred eEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCC
Confidence 4788888888999888764 445555555666777666555
No 183
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=90.85 E-value=0.3 Score=44.74 Aligned_cols=42 Identities=17% Similarity=0.044 Sum_probs=37.2
Q ss_pred ceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcC
Q 002861 204 SAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTN 245 (873)
Q Consensus 204 ~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~ 245 (873)
++.|-+|+|.+++.+..+++|.+|+|++++.||.++..+++-
T Consensus 57 g~~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~~~~ 98 (101)
T cd05635 57 GGEVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNSDLK 98 (101)
T ss_pred CCEECccEEcCCCEecCcCEEeeeEECCCCEECCCceecccc
Confidence 345679999999999999999999999999999999998764
No 184
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=90.68 E-value=0.3 Score=35.34 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=18.9
Q ss_pred eecCCceeCCCcEEEEceeCCCeEECCCcEEe
Q 002861 211 KIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV 242 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis 242 (873)
.++.+|.|+++|+| ...|++++.|+.|+.|+
T Consensus 3 ~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I~ 33 (34)
T PF14602_consen 3 TIGDNCFIGANSTI-GITIGDGVIIGAGVVIT 33 (34)
T ss_dssp EE-TTEEE-TT-EE-TSEE-TTEEE-TTEEEE
T ss_pred EECCCEEECccccc-CCEEcCCCEECCCCEEc
Confidence 46778888888887 46677777777777765
No 185
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=90.55 E-value=0.57 Score=42.79 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=9.8
Q ss_pred eeecCCceeCCCcEEEE
Q 002861 210 SKIAHGVSIGEDSLIYD 226 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve~ 226 (873)
+.|++++.|+++++|.+
T Consensus 22 v~IG~~~~Ig~~~~i~~ 38 (109)
T cd04647 22 ITIGDNVLIGPNVTIYD 38 (109)
T ss_pred eEECCCCEECCCCEEEC
Confidence 45556666666666543
No 186
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=89.93 E-value=0.74 Score=46.16 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=25.6
Q ss_pred eecCCceeCCCcEEEEceeCCCeEECCCcEEeC-cCCCCC
Q 002861 211 KIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPEE 249 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg-~~i~~~ 249 (873)
.|+++|+||.+++|.-|.|++++-||=|++|.+ +.|.++
T Consensus 74 ~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~ 113 (176)
T COG0663 74 TIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDG 113 (176)
T ss_pred EECCCcEEcCccEEEEeEECCCcEEecCceEeCCcEECCC
Confidence 566666666666666676666666666666665 555554
No 187
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=89.64 E-value=0.39 Score=53.52 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=20.4
Q ss_pred eeeecCCceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861 209 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 242 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis 242 (873)
+++|+.+|.|++++.|. +|+|++++.|+++|.|.
T Consensus 139 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg 173 (324)
T TIGR01853 139 DVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIG 173 (324)
T ss_pred cceeCCCceECCCcEECCCCEECCCCEECCCcEEC
Confidence 45555556666666664 56666666666666663
No 188
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=89.39 E-value=0.74 Score=44.58 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=33.4
Q ss_pred eeeecCCceeCCCcEEE---------EceeCCCeEECCCcEE-eCcCCCCCCCCCccCccceeeCCCeee
Q 002861 209 SSKIAHGVSIGEDSLIY---------DSNISSGIQIGSLSIV-VGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve---------~s~l~~~v~IG~~~ii-sg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
+++|+.+|.|++++.|. +++|++++.||+++.| .++.|.++ +.|.+++++
T Consensus 49 ~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~----------~~Ig~g~~V 108 (139)
T cd03350 49 CAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKG----------AVLAAGVVL 108 (139)
T ss_pred CCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCC----------CEEcCCCEE
Confidence 45677777777777774 3667777777777777 46666665 666666644
No 189
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=89.38 E-value=0.37 Score=50.36 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=47.4
Q ss_pred CCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHH
Q 002861 17 PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE 96 (873)
Q Consensus 17 ~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ 96 (873)
.++++++.+.++. ....+|+...|+++ +|.+|.+||...+- ++...++.+|+|+|+.+.+.+
T Consensus 118 ~~~~~~~~~~~~~--~p~~~~~~~~~~~~---------~v~~~~ek~~~~~~-------~~~~~~~~~giy~~~~~~~~~ 179 (229)
T cd02540 118 AGADVTVLTAELE--DPTGYGRIIRDGNG---------KVLRIVEEKDATEE-------EKAIREVNAGIYAFDAEFLFE 179 (229)
T ss_pred cCCcEEEEEEEcC--CCCCccEEEEcCCC---------CEEEEEECCCCChH-------HHhhceEEeEEEEEEHHHHHH
Confidence 4578888877765 34689998888766 79999999864310 112347899999999988877
Q ss_pred HHh
Q 002861 97 LVM 99 (873)
Q Consensus 97 ll~ 99 (873)
++.
T Consensus 180 ~l~ 182 (229)
T cd02540 180 ALP 182 (229)
T ss_pred HHH
Confidence 775
No 190
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=89.15 E-value=0.57 Score=50.65 Aligned_cols=14 Identities=36% Similarity=0.264 Sum_probs=5.7
Q ss_pred eeCCCeEECCCcEE
Q 002861 228 NISSGIQIGSLSIV 241 (873)
Q Consensus 228 ~l~~~v~IG~~~ii 241 (873)
+|++++.||.+|.|
T Consensus 178 iIgDnv~IGa~s~I 191 (272)
T PRK11830 178 IIEDNCFIGARSEV 191 (272)
T ss_pred EEcCCCEECCCCEE
Confidence 33444444444433
No 191
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=89.03 E-value=0.64 Score=52.61 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=35.8
Q ss_pred eeeecCCceeCCCcEEEE-ceeCCCeEECCCcEEeCcCCCCC
Q 002861 209 SSKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
.-++++++.|++++.|+. |+|+++++||.++.|.+.+|..+
T Consensus 261 p~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~ 302 (358)
T COG1208 261 PVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDN 302 (358)
T ss_pred CEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcC
Confidence 346888999999998886 99999999999999999998776
No 192
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=88.75 E-value=0.54 Score=47.87 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=5.6
Q ss_pred eecCCceeCCCcEE
Q 002861 211 KIAHGVSIGEDSLI 224 (873)
Q Consensus 211 vl~~~v~v~~~s~V 224 (873)
+|++++.|+++++|
T Consensus 113 ~i~~~~~ig~~~~i 126 (201)
T TIGR03570 113 VINPDVRIGDNVII 126 (201)
T ss_pred EECCCCEECCCcEE
Confidence 33333444444443
No 193
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=88.55 E-value=0.63 Score=48.06 Aligned_cols=9 Identities=0% Similarity=0.217 Sum_probs=4.3
Q ss_pred eeeCCCeee
Q 002861 260 FMLPDRHCL 268 (873)
Q Consensus 260 ~~iP~~~~i 268 (873)
+.|.+++++
T Consensus 62 ~~I~~~~~i 70 (205)
T cd03352 62 VIIHSGAVI 70 (205)
T ss_pred cEECCCCEE
Confidence 445554443
No 194
>PLN02694 serine O-acetyltransferase
Probab=88.49 E-value=0.96 Score=49.20 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=10.6
Q ss_pred ceeCCCeEECCCcEE-eCcCCCC
Q 002861 227 SNISSGIQIGSLSIV-VGTNFPE 248 (873)
Q Consensus 227 s~l~~~v~IG~~~ii-sg~~i~~ 248 (873)
++|+++|.||.||.| -++.|..
T Consensus 213 piIGd~V~IGagA~Ilggi~IGd 235 (294)
T PLN02694 213 PKIGDGVLIGAGATILGNVKIGE 235 (294)
T ss_pred cEECCCeEECCeeEECCCCEECC
Confidence 445555555555555 3344433
No 195
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=88.29 E-value=0.49 Score=52.76 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=33.1
Q ss_pred eeecCCceeCCCcEE-EEceeCCCeEECCCcEEe-CcCCCCCCCCCccCccceeeCCCeee
Q 002861 210 SKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVV-GTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 210 Svl~~~v~v~~~s~V-e~s~l~~~v~IG~~~iis-g~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
++|+.+|.|+++++| .+++|++++.|+.+|.|. ++.|.++ +.|.++++|
T Consensus 122 v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~----------~~I~~~~vI 172 (324)
T TIGR01853 122 VEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKN----------VIIHSGAVI 172 (324)
T ss_pred cEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCC----------CEECCCcEE
Confidence 356666666666666 467777777777777776 6776665 777777655
No 196
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=88.07 E-value=0.8 Score=46.63 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=15.5
Q ss_pred eeecCCceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861 210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 242 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis 242 (873)
++|+.+|.|++++.|+ +|+|+.++.||.++.|.
T Consensus 118 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~ 151 (201)
T TIGR03570 118 VRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLS 151 (201)
T ss_pred CEECCCcEECCCCEEcCCCEECCCCEECCCCEEe
Confidence 3444444444444444 24444444444444444
No 197
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=88.05 E-value=0.49 Score=50.11 Aligned_cols=49 Identities=14% Similarity=0.305 Sum_probs=36.9
Q ss_pred eeeecCCceeCCCcEEEE---------ceeCCCeEECCCcEE-eCcCCCCCCCCCccCccceeeCCCee
Q 002861 209 SSKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIV-VGTNFPEEAGSTAEDSFRFMLPDRHC 267 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve~---------s~l~~~v~IG~~~ii-sg~~i~~~~~~~~~~~~~~~iP~~~~ 267 (873)
+|+|+.+|.|++++.|.+ ++|++++.||.+++| .++.|..+ +.|++|+.
T Consensus 134 ~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~----------~~Igagsv 192 (231)
T TIGR03532 134 RATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKG----------AVVAAGAI 192 (231)
T ss_pred CcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCC----------CEECCCCE
Confidence 677888888888888874 777888888888887 47777665 66766664
No 198
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=87.71 E-value=0.64 Score=47.43 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=15.3
Q ss_pred CCceeCCCcEE-EEceeCCCeEECCCcEE
Q 002861 214 HGVSIGEDSLI-YDSNISSGIQIGSLSIV 241 (873)
Q Consensus 214 ~~v~v~~~s~V-e~s~l~~~v~IG~~~ii 241 (873)
..+.|++++|| .+++|.++++||++|+|
T Consensus 128 ~~v~IGd~v~IG~~a~I~~gv~IG~~~vI 156 (183)
T PRK10092 128 KPVTIGNNVWIGGRAVINPGVTIGDNVVV 156 (183)
T ss_pred CCeEECCCcEECCCCEECCCCEECCCCEE
Confidence 34555555555 44555555555555555
No 199
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=87.26 E-value=0.77 Score=53.51 Aligned_cols=22 Identities=14% Similarity=0.210 Sum_probs=9.7
Q ss_pred Cccceeecee-eecchHHHHHHh
Q 002861 78 GRALLDTGII-AVRGKAWEELVM 99 (873)
Q Consensus 78 ~~~l~~~Gi~-~f~~~~~~~ll~ 99 (873)
+.+++..|-. +++...+.+++.
T Consensus 90 ~~vlv~~gD~p~i~~~~i~~l~~ 112 (448)
T PRK14357 90 DDLLILYGDVPLISENTLKRLIE 112 (448)
T ss_pred CeEEEEeCCcccCCHHHHHHHHH
Confidence 3444444432 344444455544
No 200
>PLN02357 serine acetyltransferase
Probab=86.36 E-value=1.1 Score=49.98 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=14.5
Q ss_pred ceeCCCeEECCCcEEe-CcCCCCC
Q 002861 227 SNISSGIQIGSLSIVV-GTNFPEE 249 (873)
Q Consensus 227 s~l~~~v~IG~~~iis-g~~i~~~ 249 (873)
++|+++|.||.|++|. ++.|..+
T Consensus 279 piIGd~V~IGagA~IlggV~IGdg 302 (360)
T PLN02357 279 PKIGDGVLIGAGTCILGNITIGEG 302 (360)
T ss_pred ceeCCCeEECCceEEECCeEECCC
Confidence 5667777777776653 4555554
No 201
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=86.12 E-value=1.4 Score=44.27 Aligned_cols=67 Identities=24% Similarity=0.313 Sum_probs=46.3
Q ss_pred ccccccceeEEeeeecCCceeCCCcEEEE-ceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeeeeeecCc
Q 002861 198 VSDIAASAVVLSSKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGC 276 (873)
Q Consensus 198 ~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~v~l~~~ 276 (873)
...|..++.|.-+.|+.+|.||=+|+|-+ ++|+.++.||.|+.|+.. -.+|++. +++ |.
T Consensus 78 ~vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~---------------k~~p~~~----L~~-G~ 137 (176)
T COG0663 78 DVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPG---------------KEIPGGS----LVV-GS 137 (176)
T ss_pred CcEEcCccEEEEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCC---------------cCCCCCe----Eee-cC
Confidence 34555666677777888888888888877 888888888888777654 3577777 444 44
Q ss_pred ceEEEEEe
Q 002861 277 TERVLVYC 284 (873)
Q Consensus 277 ~~~v~~~~ 284 (873)
...+.+..
T Consensus 138 Pak~~r~l 145 (176)
T COG0663 138 PAKVVRPL 145 (176)
T ss_pred cceeeecC
Confidence 55555554
No 202
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=85.69 E-value=1.4 Score=44.02 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=13.3
Q ss_pred eecCCceeCCCcEEEE-ceeCCCeEECCCcEE
Q 002861 211 KIAHGVSIGEDSLIYD-SNISSGIQIGSLSIV 241 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~ii 241 (873)
+|+.+|.|+++++|.. ++|++++.||.++.|
T Consensus 115 ~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V 146 (162)
T TIGR01172 115 TVGEGVMIGAGAKVLGNIEVGENAKIGANSVV 146 (162)
T ss_pred EECCCcEEcCCCEEECCcEECCCCEECCCCEE
Confidence 4444444444444433 334444444444444
No 203
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=85.58 E-value=1 Score=48.19 Aligned_cols=83 Identities=22% Similarity=0.209 Sum_probs=55.3
Q ss_pred CCCeeeccCC---CcCcC--CC-CceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCccc
Q 002861 2 TGDVLPCFDA---STMIL--PE-DASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL 75 (873)
Q Consensus 2 ~gD~i~~~d~---~~~~~--~~-a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~ 75 (873)
-||+|+.-+. .||+. .. -.-++...++|.+..+.+||+.....- +.+ ..+|++|.|||+.++-+
T Consensus 130 L~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~ev~~e~v~kYGvi~~g~~~--~~~--~~~v~~~VEKP~~~~AP------ 199 (291)
T COG1210 130 LPDDLVDSEKPCLKQMIELYEETGGSVIGVEEVPPEDVSKYGVIDPGEPV--EKG--VYKVKGMVEKPKPEEAP------ 199 (291)
T ss_pred eCCeeecCCchHHHHHHHHHHHhCCcEEEEEECCHHHCcccceEecCccc--cCC--eEEEEEEEECCCCCCCC------
Confidence 3677666542 23444 22 234667778899999999999832221 111 12799999999887522
Q ss_pred CCCccceeeceeeecchHHHHH
Q 002861 76 DDGRALLDTGIIAVRGKAWEEL 97 (873)
Q Consensus 76 ~~~~~l~~~Gi~~f~~~~~~~l 97 (873)
.-++.+|-|+|+++.+..|
T Consensus 200 ---Snlai~GRYil~p~IFd~L 218 (291)
T COG1210 200 ---SNLAIVGRYVLTPEIFDIL 218 (291)
T ss_pred ---cceeeeeeeecCHHHHHHH
Confidence 4488999999999977543
No 204
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=85.42 E-value=1.6 Score=47.19 Aligned_cols=16 Identities=25% Similarity=0.069 Sum_probs=7.1
Q ss_pred eeecCCceeCCCcEEE
Q 002861 210 SKIAHGVSIGEDSLIY 225 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve 225 (873)
++|+.++.|+++++|.
T Consensus 81 v~IG~~~~I~e~~~I~ 96 (262)
T PRK05289 81 LVIGDNNTIREFVTIN 96 (262)
T ss_pred EEECCCCEECCCeEEe
Confidence 3344444444444444
No 205
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=85.41 E-value=1.1 Score=44.64 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=25.3
Q ss_pred eeecCCceeCCCcEEEE---------ceeCCCeEECCCcEEeC-cCCCCC
Q 002861 210 SKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIVVG-TNFPEE 249 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve~---------s~l~~~v~IG~~~iisg-~~i~~~ 249 (873)
++|+.+|.|++++.|.. ++|+++|.||.+|.|.+ +.|..+
T Consensus 88 ~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~ 137 (162)
T TIGR01172 88 AVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGEN 137 (162)
T ss_pred CEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCC
Confidence 45555555555555543 47788888888888766 444443
No 206
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=85.36 E-value=0.67 Score=52.30 Aligned_cols=41 Identities=32% Similarity=0.429 Sum_probs=26.3
Q ss_pred eeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861 209 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
+++|+.+|.||++|+|.+|.|++++.|-+.|.|.++.+..+
T Consensus 286 ~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~ 326 (460)
T COG1207 286 NTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG 326 (460)
T ss_pred eEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC
Confidence 34566666666666666666666666666666666666544
No 207
>PRK10502 putative acyl transferase; Provisional
Probab=85.16 E-value=1.3 Score=45.08 Aligned_cols=6 Identities=33% Similarity=0.634 Sum_probs=2.6
Q ss_pred cccCcc
Q 002861 299 TFCGKP 304 (873)
Q Consensus 299 t~~g~~ 304 (873)
.+.|.|
T Consensus 166 v~~G~P 171 (182)
T PRK10502 166 ICRGNP 171 (182)
T ss_pred EEECCc
Confidence 344444
No 208
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=85.13 E-value=1.5 Score=42.89 Aligned_cols=42 Identities=10% Similarity=0.223 Sum_probs=29.3
Q ss_pred cccceeEEe-eeecCCceeCCCcEEE-----EceeCCCeEECCCcEEe
Q 002861 201 IAASAVVLS-SKIAHGVSIGEDSLIY-----DSNISSGIQIGSLSIVV 242 (873)
Q Consensus 201 i~~~~~V~~-Svl~~~v~v~~~s~Ve-----~s~l~~~v~IG~~~iis 242 (873)
+..|+.|.. +++..++.|++++.|. .|.|+.++.||.+|.|.
T Consensus 16 IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~ 63 (147)
T cd04649 16 LAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM 63 (147)
T ss_pred ECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE
Confidence 444555544 6778888888888875 46677777777777777
No 209
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=84.53 E-value=1.5 Score=48.35 Aligned_cols=9 Identities=0% Similarity=0.217 Sum_probs=5.2
Q ss_pred eeeCCCeee
Q 002861 260 FMLPDRHCL 268 (873)
Q Consensus 260 ~~iP~~~~i 268 (873)
+.|-+|++|
T Consensus 172 v~I~~GavI 180 (338)
T COG1044 172 VIIHSGAVI 180 (338)
T ss_pred eEECCCCEE
Confidence 666666643
No 210
>PLN02694 serine O-acetyltransferase
Probab=83.98 E-value=1.1 Score=48.86 Aligned_cols=37 Identities=35% Similarity=0.441 Sum_probs=30.4
Q ss_pred EEeeeecCCceeCCCcEE-EEceeCCCeEECCCcEEeC
Q 002861 207 VLSSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVVG 243 (873)
Q Consensus 207 V~~Svl~~~v~v~~~s~V-e~s~l~~~v~IG~~~iisg 243 (873)
..+++|+.+|.|+.++.| .++.|++++.||.+++|.+
T Consensus 210 ~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~k 247 (294)
T PLN02694 210 DRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLI 247 (294)
T ss_pred CCccEECCCeEECCeeEECCCCEECCCCEECCCCEECC
Confidence 346788899999998888 7888888888888888864
No 211
>PRK10191 putative acyl transferase; Provisional
Probab=83.82 E-value=1.6 Score=42.84 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=21.2
Q ss_pred eecCCceeCCCcEEEE--------ceeCCCeEECCCcEEeC-cCCCCC
Q 002861 211 KIAHGVSIGEDSLIYD--------SNISSGIQIGSLSIVVG-TNFPEE 249 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve~--------s~l~~~v~IG~~~iisg-~~i~~~ 249 (873)
+++.+|.|+.++.|++ ++|++++.||.+|.|.+ +.|..+
T Consensus 69 ~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~ 116 (146)
T PRK10191 69 VAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNN 116 (146)
T ss_pred EECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCC
Confidence 4555555555555542 25566666666666653 444443
No 212
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=83.65 E-value=1.8 Score=45.84 Aligned_cols=70 Identities=21% Similarity=0.155 Sum_probs=48.3
Q ss_pred CCCceEEEEEec-Cc---cccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcc--cCCCccceeeceeeec
Q 002861 17 PEDASCIITVPI-TL---DIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAI--LDDGRALLDTGIIAVR 90 (873)
Q Consensus 17 ~~a~vtv~a~p~-~~---~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~--~~~~~~l~~~Gi~~f~ 90 (873)
+++++++++.+. ++ ..-...||+ +|+++ +|..|.+||..++- .+. ..+...+..+|+|+|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d~~g---------~v~~~~e~~~~~~~---~~~~~~~~~~~~~~~Giy~~~ 185 (245)
T PRK05450 119 PEADMATLAVPIHDAEEAFNPNVVKVV-LDADG---------RALYFSRAPIPYGR---DAFADSAPTPVYRHIGIYAYR 185 (245)
T ss_pred CCCCeEeeeeecCCHHHhcCcCCCEEE-eCCCC---------cEEEecCCCCCCCC---CccccccCccccEEEEEEecC
Confidence 357888888777 32 334557887 78777 79999999954320 010 0123478999999999
Q ss_pred chHHHHHHh
Q 002861 91 GKAWEELVM 99 (873)
Q Consensus 91 ~~~~~~ll~ 99 (873)
.+.+..+..
T Consensus 186 ~~~l~~~~~ 194 (245)
T PRK05450 186 RGFLRRFVS 194 (245)
T ss_pred HHHHHHHHh
Confidence 998888765
No 213
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=83.54 E-value=1.7 Score=46.85 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=19.6
Q ss_pred eeecCCceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861 210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 242 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis 242 (873)
++++++|.|+++++|. +++|.+++.||++|.|.
T Consensus 24 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~ 57 (255)
T PRK12461 24 AVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIH 57 (255)
T ss_pred CEECCCCEECCCcEEccCCEEeCCCEECCCCEEc
Confidence 4456666666666665 55556666666666553
No 214
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=83.45 E-value=1.7 Score=46.97 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=22.5
Q ss_pred cccceeEEeeeec------CCceeCCCcEEEE-ceeCCCeEECCCcEEeCc
Q 002861 201 IAASAVVLSSKIA------HGVSIGEDSLIYD-SNISSGIQIGSLSIVVGT 244 (873)
Q Consensus 201 i~~~~~V~~Svl~------~~v~v~~~s~Ve~-s~l~~~v~IG~~~iisg~ 244 (873)
|..++.|+.+.++ +++.|+.++.|.+ |+|+.+++|+.+++|.++
T Consensus 118 Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~ 168 (272)
T PRK11830 118 IAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGV 168 (272)
T ss_pred ECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCC
Confidence 4445555544444 4444444444444 355566666666655543
No 215
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=83.39 E-value=1.2 Score=50.02 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=6.9
Q ss_pred ceeecCCHHH
Q 002861 58 DLLQKPNVDE 67 (873)
Q Consensus 58 ~fl~KPs~~~ 67 (873)
.|+.+|...+
T Consensus 39 sFl~~~k~~~ 48 (343)
T PRK00892 39 SFLANPKYRK 48 (343)
T ss_pred EEEcCchhHH
Confidence 4888887644
No 216
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=83.06 E-value=3 Score=41.82 Aligned_cols=39 Identities=28% Similarity=0.484 Sum_probs=24.3
Q ss_pred eecCCceeCCCcEEE-------------------EceeCCCeEECCCcEEe-CcCCCCC
Q 002861 211 KIAHGVSIGEDSLIY-------------------DSNISSGIQIGSLSIVV-GTNFPEE 249 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve-------------------~s~l~~~v~IG~~~iis-g~~i~~~ 249 (873)
.|+.+|.|++++.|. .++|++++.||.+|+|- ++.|.++
T Consensus 84 ~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~ 142 (169)
T cd03357 84 TIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGDN 142 (169)
T ss_pred EECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECCC
Confidence 567777777777774 34566666666666653 4555444
No 217
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=82.99 E-value=1.5 Score=45.17 Aligned_cols=11 Identities=55% Similarity=1.008 Sum_probs=4.0
Q ss_pred CCceeCCCcEE
Q 002861 214 HGVSIGEDSLI 224 (873)
Q Consensus 214 ~~v~v~~~s~V 224 (873)
++++|+++++|
T Consensus 36 ~~~~Ig~~~~i 46 (205)
T cd03352 36 DGVVIGDDCVI 46 (205)
T ss_pred CCCEECCCCEE
Confidence 33333333333
No 218
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=82.84 E-value=1.7 Score=49.00 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=5.0
Q ss_pred eCCCeEECCCcEE
Q 002861 229 ISSGIQIGSLSIV 241 (873)
Q Consensus 229 l~~~v~IG~~~ii 241 (873)
|++++.|+.+|.|
T Consensus 169 Ig~~~~I~~~~~I 181 (343)
T PRK00892 169 IGNRVIIHSGAVI 181 (343)
T ss_pred ECCCCEECCCCEE
Confidence 3333333333333
No 219
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=82.71 E-value=1.5 Score=39.80 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=15.6
Q ss_pred cCCceeCCCcE---EEEceeCCCeEECCCcEEeC
Q 002861 213 AHGVSIGEDSL---IYDSNISSGIQIGSLSIVVG 243 (873)
Q Consensus 213 ~~~v~v~~~s~---Ve~s~l~~~v~IG~~~iisg 243 (873)
..+++|+.++. +.+++|++++.||.++.+..
T Consensus 38 ~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~ 71 (101)
T cd03354 38 YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILG 71 (101)
T ss_pred cCCCEECCCccCCcCCCCEECCCcEEcCCCEEEC
Confidence 34444444442 44445556666666665554
No 220
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=82.29 E-value=2.4 Score=43.30 Aligned_cols=39 Identities=18% Similarity=0.406 Sum_probs=22.2
Q ss_pred eecCCceeCCCcEEE-------------------EceeCCCeEECCCcEEe-CcCCCCC
Q 002861 211 KIAHGVSIGEDSLIY-------------------DSNISSGIQIGSLSIVV-GTNFPEE 249 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve-------------------~s~l~~~v~IG~~~iis-g~~i~~~ 249 (873)
.|+.+|.|++++.|. ..+|++++.||.+|+|. ++.|.++
T Consensus 95 ~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~ 153 (183)
T PRK10092 95 RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDN 153 (183)
T ss_pred EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEECCC
Confidence 466677777776664 23455555555555553 4444444
No 221
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=81.93 E-value=2.6 Score=45.52 Aligned_cols=35 Identities=14% Similarity=-0.018 Sum_probs=18.6
Q ss_pred eeecCCceeCCCcEEE-------------EceeCCCeEECCCcEEeCc
Q 002861 210 SKIAHGVSIGEDSLIY-------------DSNISSGIQIGSLSIVVGT 244 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve-------------~s~l~~~v~IG~~~iisg~ 244 (873)
++|+.+|.|+++++|. +++|++++.|+++|.|.+.
T Consensus 51 ~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~ 98 (262)
T PRK05289 51 TTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRG 98 (262)
T ss_pred cEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecc
Confidence 4455555555555553 3555555555555555543
No 222
>PLN02739 serine acetyltransferase
Probab=81.26 E-value=1.8 Score=48.20 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=22.7
Q ss_pred eeecCCceeCCCcEEE---------EceeCCCeEECCCcEEeC-cCCCCC
Q 002861 210 SKIAHGVSIGEDSLIY---------DSNISSGIQIGSLSIVVG-TNFPEE 249 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve---------~s~l~~~v~IG~~~iisg-~~i~~~ 249 (873)
++|+.+|+|..+++|. +..|+++|.||.|+.|.+ +.|..+
T Consensus 232 avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~ 281 (355)
T PLN02739 232 AVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAG 281 (355)
T ss_pred CEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCC
Confidence 3455555555555553 356667777777776654 444443
No 223
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=80.87 E-value=1.7 Score=47.58 Aligned_cols=64 Identities=19% Similarity=0.328 Sum_probs=48.6
Q ss_pred cccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHHHHhhhc
Q 002861 33 ASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSC 102 (873)
Q Consensus 33 a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ll~~~~ 102 (873)
.|.+|-+...+.-- +...++|.+|.|||..+.-++ ....|.++=-+|+++|...+..+.++.+.
T Consensus 151 eTGYGYIe~G~~~~---~~~~~~V~~FvEKPd~etA~~---yv~sG~y~WNSGmF~Fra~~~l~e~~~~~ 214 (333)
T COG0836 151 ETGYGYIETGESIA---ENGVYKVDRFVEKPDLETAKK---YVESGEYLWNSGMFLFRASVFLEELKKHQ 214 (333)
T ss_pred ccCcceeecCcccc---cCCceEeeeeeeCCCHHHHHH---HHHcCceEeeccceEEEHHHHHHHHHhhC
Confidence 35599998865421 112337999999999987543 46778899999999999999999888774
No 224
>PLN02357 serine acetyltransferase
Probab=80.83 E-value=3.5 Score=46.17 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=12.5
Q ss_pred ecCCceeCCCcEEEE---ceeCCCeEECCCc
Q 002861 212 IAHGVSIGEDSLIYD---SNISSGIQIGSLS 239 (873)
Q Consensus 212 l~~~v~v~~~s~Ve~---s~l~~~v~IG~~~ 239 (873)
|.++++||+|..|.+ ++|++++.||++|
T Consensus 229 I~p~a~IG~Gv~Idh~~giVIGe~avIGdnV 259 (360)
T PLN02357 229 IHPGAKIGQGILLDHATGVVIGETAVVGNNV 259 (360)
T ss_pred eCCCCEECCCeEECCCCceEECCCCEECCCC
Confidence 444444444444443 3344444444444
No 225
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=80.80 E-value=3.1 Score=44.71 Aligned_cols=14 Identities=29% Similarity=0.152 Sum_probs=5.7
Q ss_pred eecCCceeCCCcEE
Q 002861 211 KIAHGVSIGEDSLI 224 (873)
Q Consensus 211 vl~~~v~v~~~s~V 224 (873)
+|+.++.|+++++|
T Consensus 78 ~IG~~~~I~~~~~I 91 (254)
T TIGR01852 78 IIGDNNTIREFVTI 91 (254)
T ss_pred EECCCCEECCCCEE
Confidence 34444444444444
No 226
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=80.48 E-value=2.4 Score=50.07 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=28.9
Q ss_pred ccccccceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEe-CcCCC
Q 002861 198 VSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFP 247 (873)
Q Consensus 198 ~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iis-g~~i~ 247 (873)
++.|..++.|.+|+|+.++.|+. +.+++|+|++++.||++|+|. ++.+.
T Consensus 295 ~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg 344 (482)
T PRK14352 295 DAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLG 344 (482)
T ss_pred CCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEc
Confidence 34454555566666666666653 556666666666666666664 44443
No 227
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=80.31 E-value=2.2 Score=30.81 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=18.0
Q ss_pred eeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 228 NISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 228 ~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
.|++++.||.+|.| ++.+..+ +.|.+|+.|
T Consensus 3 ~IG~~~~ig~~~~i-gi~igd~----------~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIGANSTI-GITIGDG----------VIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE-TT-EE-TSEE-TT----------EEE-TTEEE
T ss_pred EECCCEEECccccc-CCEEcCC----------CEECCCCEE
Confidence 46778888888887 6666665 777777654
No 228
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=80.11 E-value=2.7 Score=45.13 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=17.9
Q ss_pred eeecCCceeCCCcEEE-------------EceeCCCeEECCCcEEeC
Q 002861 210 SKIAHGVSIGEDSLIY-------------DSNISSGIQIGSLSIVVG 243 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve-------------~s~l~~~v~IG~~~iisg 243 (873)
++|+.+|.|+++++|. +++|++++.||++|.|.+
T Consensus 48 v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~ 94 (254)
T cd03351 48 TTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHR 94 (254)
T ss_pred eEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEec
Confidence 4455555555555553 455555555555555543
No 229
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=79.96 E-value=2.1 Score=46.07 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=14.7
Q ss_pred eecCCceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861 211 KIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 242 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis 242 (873)
.|+.++.|+++++|. ++.|+++++|+.++.|.
T Consensus 31 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig 63 (255)
T PRK12461 31 EIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVG 63 (255)
T ss_pred EECCCcEEccCCEEeCCCEECCCCEEccCcEeC
Confidence 344444444444444 44444444444444443
No 230
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=79.67 E-value=4.1 Score=43.49 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=20.4
Q ss_pred eecCCceeCCCcEEEE---------ceeCCCeEECCCc-EEeCcCCCCC
Q 002861 211 KIAHGVSIGEDSLIYD---------SNISSGIQIGSLS-IVVGTNFPEE 249 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve~---------s~l~~~v~IG~~~-iisg~~i~~~ 249 (873)
+++.+|.|+-|+.|.- .+|++||-||.|+ ++.|+++.++
T Consensus 158 ~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg 206 (271)
T COG2171 158 QVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDG 206 (271)
T ss_pred EECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCC
Confidence 3555555555555543 2344555555555 5566665555
No 231
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=79.43 E-value=2.6 Score=45.74 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=19.7
Q ss_pred eeecCCceeCCCcEEE---------EceeCCCeEECCCcEEeC
Q 002861 210 SKIAHGVSIGEDSLIY---------DSNISSGIQIGSLSIVVG 243 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve---------~s~l~~~v~IG~~~iisg 243 (873)
++|+.+|+|..+++|. ++.|+++|.||.||+|.+
T Consensus 168 a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilg 210 (273)
T PRK11132 168 AVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILG 210 (273)
T ss_pred CEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcC
Confidence 3455555555555554 356666777777776654
No 232
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=79.29 E-value=4.3 Score=37.29 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=6.5
Q ss_pred eecCCceeCCCcEE
Q 002861 211 KIAHGVSIGEDSLI 224 (873)
Q Consensus 211 vl~~~v~v~~~s~V 224 (873)
.|+.+|.|++++.|
T Consensus 25 ~IG~~~~I~~~~~I 38 (107)
T cd05825 25 TIGSDACISQGAYL 38 (107)
T ss_pred EECCCCEECCCeEe
Confidence 34444444444444
No 233
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=79.29 E-value=2 Score=46.07 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=16.3
Q ss_pred eecCCceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861 211 KIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 242 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis 242 (873)
.|+.+|.|+++++|+ ++.|++++.|+++|.|.
T Consensus 31 ~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~ 63 (254)
T cd03351 31 EIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIG 63 (254)
T ss_pred EECCCCEECCCcEEeCCeEECCCCEEecceeec
Confidence 345555555555444 24555555555555553
No 234
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=78.50 E-value=3.7 Score=44.06 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=23.9
Q ss_pred eeeecCCceeCCCcEEE-------------EceeCCCeEECCCcEEeCc
Q 002861 209 SSKIAHGVSIGEDSLIY-------------DSNISSGIQIGSLSIVVGT 244 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve-------------~s~l~~~v~IG~~~iisg~ 244 (873)
+++|+.++.|+++++|. +++|++++.||++|.|...
T Consensus 46 ~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~ 94 (254)
T TIGR01852 46 HTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRG 94 (254)
T ss_pred eEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCc
Confidence 35666777777777775 5667777777777777543
No 235
>PLN02739 serine acetyltransferase
Probab=78.02 E-value=2.5 Score=47.04 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=13.2
Q ss_pred eecCCceeCCCcEEE-EceeCCCeEECCCcEE
Q 002861 211 KIAHGVSIGEDSLIY-DSNISSGIQIGSLSIV 241 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~ii 241 (873)
+|+.+|.|++++.|. +..|+.++.||.|++|
T Consensus 259 ~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV 290 (355)
T PLN02739 259 KIGDGALLGACVTILGNISIGAGAMVAAGSLV 290 (355)
T ss_pred EECCCCEEcCCCEEeCCeEECCCCEECCCCEE
Confidence 444444444444442 2333444444444443
No 236
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=77.40 E-value=4.9 Score=41.71 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=7.5
Q ss_pred eecCCceeCCCcEEE
Q 002861 211 KIAHGVSIGEDSLIY 225 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve 225 (873)
.|+.+|.|++++.|.
T Consensus 97 ~IGd~v~Ig~~v~I~ 111 (203)
T PRK09527 97 TIGDNVLIAPNVTLS 111 (203)
T ss_pred EECCCCEECCCCEEE
Confidence 345555555555543
No 237
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=77.08 E-value=2 Score=30.91 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=13.2
Q ss_pred ceeCCCcEEEEc-eeCCCeEECCCcEE
Q 002861 216 VSIGEDSLIYDS-NISSGIQIGSLSIV 241 (873)
Q Consensus 216 v~v~~~s~Ve~s-~l~~~v~IG~~~ii 241 (873)
+.|+++++|..- +|.+++.||++|+|
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I 28 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVI 28 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEE
Confidence 455555555533 33555555555555
No 238
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=76.87 E-value=3.7 Score=44.79 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=20.6
Q ss_pred ceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCee
Q 002861 227 SNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC 267 (873)
Q Consensus 227 s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~ 267 (873)
.+|++++.||.||.| |+.|..+ ++|-.|.+
T Consensus 226 V~IGe~~~IGagA~I-GI~IGd~----------~VVGAGaV 255 (319)
T TIGR03535 226 ISIGERCLLGANSGL-GISLGDD----------CVVEAGLY 255 (319)
T ss_pred EEECCCcEECCCCEE-CeEECCC----------CEECCCCE
Confidence 456666777777777 7777665 77777763
No 239
>PRK10502 putative acyl transferase; Provisional
Probab=75.94 E-value=3.7 Score=41.80 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=26.9
Q ss_pred eeeecCCceeCCCcEEE---EceeCCCeEECCCcEEe
Q 002861 209 SSKIAHGVSIGEDSLIY---DSNISSGIQIGSLSIVV 242 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve---~s~l~~~v~IG~~~iis 242 (873)
+..|+.++.|+++++|. ...|++++.|+.+|.|.
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~ 107 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLC 107 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEEE
Confidence 46789999999999987 46677777777777764
No 240
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=75.73 E-value=4.8 Score=42.39 Aligned_cols=68 Identities=18% Similarity=0.127 Sum_probs=44.2
Q ss_pred CCceEEEEEecC-cc---ccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchH
Q 002861 18 EDASCIITVPIT-LD---IASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKA 93 (873)
Q Consensus 18 ~a~vtv~a~p~~-~~---~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~ 93 (873)
++++++.+.+++ ++ ....+||. .|+++ +|..|.+||..++ + . ..++....+.+|+|+|+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~---------~v~~~~~~~~~~~--~-~-~~~~~~~~~~~Giy~~~~~~ 185 (239)
T cd02517 120 GVDMATLATPISDEEELFNPNVVKVV-LDKDG---------YALYFSRSPIPYP--R-D-SSEDFPYYKHIGIYAYRRDF 185 (239)
T ss_pred CCCEEEEEEEcCCHHHccCCCCCEEE-ECCCC---------CEEEecCCCCCCC--C-C-CCCCCceeEEEEEEEECHHH
Confidence 678888888874 33 34445554 56566 6888988764321 0 0 01223457899999999999
Q ss_pred HHHHHh
Q 002861 94 WEELVM 99 (873)
Q Consensus 94 ~~~ll~ 99 (873)
+..+..
T Consensus 186 ~~~~~~ 191 (239)
T cd02517 186 LLRFAA 191 (239)
T ss_pred HHHHHh
Confidence 887654
No 241
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=75.58 E-value=5.8 Score=49.03 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=11.8
Q ss_pred eecCCceeCCCcEEEE
Q 002861 211 KIAHGVSIGEDSLIYD 226 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve~ 226 (873)
.|+.+|.|++++.|+.
T Consensus 618 ~IGd~~~I~~~~~i~~ 633 (695)
T TIGR02353 618 TIGDDSTLNEGSVIQT 633 (695)
T ss_pred EECCCCEECCCCEEEe
Confidence 6777788888877753
No 242
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=75.48 E-value=3.4 Score=44.76 Aligned_cols=34 Identities=35% Similarity=0.581 Sum_probs=19.8
Q ss_pred eeeecCCceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861 209 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 242 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iis 242 (873)
+.+|+.+|.||.+|.|. ++.|+.++.||.|++|.
T Consensus 193 ~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~ 227 (273)
T PRK11132 193 HPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVL 227 (273)
T ss_pred CCEECCCcEEcCCCEEcCCCEECCCCEECCCCEEC
Confidence 35667777777766553 34455555555555554
No 243
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=75.09 E-value=4 Score=39.41 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=19.4
Q ss_pred eecCCceeCCCcEEE-EceeCCCeEECCCcEEeC
Q 002861 211 KIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVG 243 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg 243 (873)
.|+.++.|+.++.|. +++|++++.|+.+|.|.+
T Consensus 33 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg 66 (139)
T cd03350 33 YVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGG 66 (139)
T ss_pred EECCCeEEcCCCEECCCCEECCCCEECCCCEECC
Confidence 355555555555553 456666666666666654
No 244
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=74.91 E-value=6.5 Score=40.34 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=12.6
Q ss_pred ecCCceeCCCcEEE---EceeCCCeEECCCcEEe
Q 002861 212 IAHGVSIGEDSLIY---DSNISSGIQIGSLSIVV 242 (873)
Q Consensus 212 l~~~v~v~~~s~Ve---~s~l~~~v~IG~~~iis 242 (873)
++.+|.|++++.|. ...|++++.||.++.|.
T Consensus 68 IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~ 101 (192)
T PRK09677 68 FGDNVQVNDYVHIACIESITIGRDTLIASKVFIT 101 (192)
T ss_pred ECCCCEECCCcEEccCceEEECCCCEECCCeEEE
Confidence 33344444444433 23444444444444443
No 245
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=74.83 E-value=4.1 Score=44.68 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=23.6
Q ss_pred eeeecCCceeCCCcEEEEceeCCC----eEECCCcEE
Q 002861 209 SSKIAHGVSIGEDSLIYDSNISSG----IQIGSLSIV 241 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve~s~l~~~----v~IG~~~ii 241 (873)
.++|+.+|.|+.++.| +++|.++ |+||++|.|
T Consensus 224 GavIGhds~IG~gasI-g~tLsGg~~~~V~IGe~~lI 259 (341)
T TIGR03536 224 GVMVGKGSDLGGGCST-MGTLSGGGNIVISVGEGCLL 259 (341)
T ss_pred CCEECCCCEECCCCEE-eEEEeCCCceeEEECCCcEE
Confidence 4578888888888888 6677777 666666654
No 246
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=74.12 E-value=2.1 Score=46.80 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=47.9
Q ss_pred CceeEEecCcHHHHhhhc--cCCccccccceeeecCCCcccccccceeEEeeeecCCceeCCCcEEEE-ceeCCCeEECC
Q 002861 161 ELLFLHFGTSSEVLDHLS--GDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYD-SNISSGIQIGS 237 (873)
Q Consensus 161 ~a~F~h~gt~~e~l~~l~--~~~~~l~~~~~~~~~~~~~~~~i~~~~~V~~Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~ 237 (873)
++-.--+||..+|+.-+. -++.+. +.++--.++.-+.++.+++|+ .++|++|.|.. |+|+++++|+.
T Consensus 224 ~gfWmDIGqpkdf~~g~~~Yl~s~~~------~t~~r~~p~~~i~~nvlvd~~----~~iG~~C~Ig~~vvIG~r~~i~~ 293 (371)
T KOG1322|consen 224 PGFWMDIGQPKDFLTGFSFYLRSLPK------YTSPRLLPGSKIVGNVLVDSI----ASIGENCSIGPNVVIGPRVRIED 293 (371)
T ss_pred CchhhhcCCHHHHHHHHHHHHhhCcc------cCCccccCCccccccEeeccc----cccCCccEECCCceECCCcEecC
Confidence 454555788888877322 111111 111111112233355665555 44558888888 88999999999
Q ss_pred CcEEeCcCCCCC
Q 002861 238 LSIVVGTNFPEE 249 (873)
Q Consensus 238 ~~iisg~~i~~~ 249 (873)
+.+|.++.+-.+
T Consensus 294 gV~l~~s~il~~ 305 (371)
T KOG1322|consen 294 GVRLQDSTILGA 305 (371)
T ss_pred ceEEEeeEEEcc
Confidence 999988887665
No 247
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=73.87 E-value=7.1 Score=42.90 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=29.9
Q ss_pred eeecCCceeCCCcEEEE-ceeCCCeE-ECCCcE----EeCcCCCCCCCCCccCccceeeCCCeee
Q 002861 210 SKIAHGVSIGEDSLIYD-SNISSGIQ-IGSLSI----VVGTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve~-s~l~~~v~-IG~~~i----isg~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
+++..++.|++|++|.+ ++|..+.. +|.++| -+++.|+.+ ++|-++++|
T Consensus 185 a~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhd----------s~IG~gasI 239 (341)
T TIGR03536 185 ARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKG----------SDLGGGCST 239 (341)
T ss_pred CeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCC----------CEECCCCEE
Confidence 34566666777776666 66666666 665555 345555554 666666655
No 248
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=73.53 E-value=4.3 Score=43.78 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=34.2
Q ss_pred eecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861 211 KIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
-|+.+|+||+|..+.+|+|.+++.|.+|+.+..+++.-.
T Consensus 308 SIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~ 346 (407)
T KOG1460|consen 308 SIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWK 346 (407)
T ss_pred eecCCceecCCceeeeeeeccCcEeeccceEEeeeeccc
Confidence 467778888999999999999999999999999998644
No 249
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=73.05 E-value=5.5 Score=46.06 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=44.0
Q ss_pred CceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCeeeeeeeec
Q 002861 215 GVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLV 274 (873)
Q Consensus 215 ~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~i~~v~l~ 274 (873)
...+.+++.|.+|+|.++++||++++|..|.+..+ +.|..|+.|-.+++.
T Consensus 273 ~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~----------~~IG~~cIisGv~~~ 322 (414)
T PF07959_consen 273 PSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGP----------WSIGSNCIISGVDIN 322 (414)
T ss_pred ccccCCCeeEEEeEecCCceECCCCEEEeeecCCC----------CEECCCCEEECCccc
Confidence 44678899999999999999999999999999776 999999988777663
No 250
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=72.36 E-value=8.4 Score=35.34 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=20.6
Q ss_pred eecCCceeCCCcEEEE---ceeCCCeEECCCcEEe
Q 002861 211 KIAHGVSIGEDSLIYD---SNISSGIQIGSLSIVV 242 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve~---s~l~~~v~IG~~~iis 242 (873)
.|+.++.|+++++|.+ ..|++++.|+++|+|.
T Consensus 5 ~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~ 39 (107)
T cd05825 5 TIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLC 39 (107)
T ss_pred EECCCCEECCCCEEeeCCceEECCCCEECCCeEee
Confidence 4566777777777754 3566666666666664
No 251
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=71.38 E-value=4.7 Score=44.54 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=11.5
Q ss_pred cCCceeCCCcEEEE-ceeCCCeEECCCcEE
Q 002861 213 AHGVSIGEDSLIYD-SNISSGIQIGSLSIV 241 (873)
Q Consensus 213 ~~~v~v~~~s~Ve~-s~l~~~v~IG~~~ii 241 (873)
+.++.|.+++.|.+ +.|+.+|.|+++++|
T Consensus 151 G~~~~i~~~v~I~~~~~IG~~v~I~~GavI 180 (338)
T COG1044 151 GDGTVIHPNVTIYHNVVIGNNVIIHSGAVI 180 (338)
T ss_pred CCCcEEcCCCEEecCcEECCceEECCCCEE
Confidence 33333333333333 444444444444443
No 252
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=68.13 E-value=6.4 Score=41.39 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=11.9
Q ss_pred ecCCceeCCCcEEEEceeCCCeEECCCcEE
Q 002861 212 IAHGVSIGEDSLIYDSNISSGIQIGSLSIV 241 (873)
Q Consensus 212 l~~~v~v~~~s~Ve~s~l~~~v~IG~~~ii 241 (873)
|+++|.||+ +|+|+++|+||.+++|
T Consensus 18 ig~~V~IGp-----f~iIg~~V~ig~~t~l 42 (260)
T COG1043 18 IGEDVKIGP-----FCIIGPNVEIGDGTVL 42 (260)
T ss_pred cCCCCEECc-----eEEECCCcEECCCcEE
Confidence 445555555 3444444444444443
No 253
>PRK10191 putative acyl transferase; Provisional
Probab=65.67 E-value=14 Score=36.20 Aligned_cols=34 Identities=29% Similarity=0.634 Sum_probs=25.4
Q ss_pred eecCCceeCCCcEEE-EceeCCCeEECCCcEEeCc
Q 002861 211 KIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGT 244 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg~ 244 (873)
+++.+|.|++++.|. +..|++++.||.++.|.+-
T Consensus 94 ~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 94 HIGNGVELGANVIILGDITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred EECCCcEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence 678888888887776 4777777777777777653
No 254
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=65.26 E-value=6.5 Score=38.46 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=27.0
Q ss_pred EeeeecCCceeCCCcEE-EEceeCCCeEECCCcEEeC
Q 002861 208 LSSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVVG 243 (873)
Q Consensus 208 ~~Svl~~~v~v~~~s~V-e~s~l~~~v~IG~~~iisg 243 (873)
..++|+.+|.|+.+++| ..+.|++++.||.+|+|.+
T Consensus 72 ~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~ 108 (145)
T cd03349 72 GDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTK 108 (145)
T ss_pred CCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 35678888888888877 4667777788888777764
No 255
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=65.24 E-value=9.6 Score=44.84 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=52.7
Q ss_pred eEEEEEecCccc-cccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHHHHHHh
Q 002861 21 SCIITVPITLDI-ASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 99 (873)
Q Consensus 21 vtv~a~p~~~~~-a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~~~ll~ 99 (873)
++.++++ +.. .|.||-+..++.-.....-....|..|.|||+.+.-.+ ....|.++=-+|+++|+.+++.+.++
T Consensus 144 lvt~GI~--Pt~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~---yl~~G~y~WNsGiF~~~a~~~l~~~~ 218 (478)
T PRK15460 144 LVTFGIV--PDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQA---YVASGEYYWNSGMFLFRAGRYLEELK 218 (478)
T ss_pred EEEEecC--CCCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHH---HHHcCCEEEecceeheeHHHHHHHHH
Confidence 4445543 333 45699999875410000000126999999999987543 46778899999999999999999998
Q ss_pred hhc
Q 002861 100 LSC 102 (873)
Q Consensus 100 ~~~ 102 (873)
++.
T Consensus 219 ~~~ 221 (478)
T PRK15460 219 KYR 221 (478)
T ss_pred HHC
Confidence 553
No 256
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=65.21 E-value=9.5 Score=39.13 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=20.2
Q ss_pred eeecCCceeCCCcEEE-EceeCCCeEECCCcEEeC
Q 002861 210 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVG 243 (873)
Q Consensus 210 Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg 243 (873)
.+|+.+|.|+.+++|. .++|++++.||.++.|++
T Consensus 131 v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~ 165 (192)
T PRK09677 131 VVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTK 165 (192)
T ss_pred eEEcCCcEECCCCEEcCCCEECCCCEECCCCEECc
Confidence 3466666666666554 455666666666666643
No 257
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=63.99 E-value=13 Score=36.25 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=12.9
Q ss_pred EEceeCCCeEECCCcEE-eCcCCCCC
Q 002861 225 YDSNISSGIQIGSLSIV-VGTNFPEE 249 (873)
Q Consensus 225 e~s~l~~~v~IG~~~ii-sg~~i~~~ 249 (873)
.+++|++++.||.+|+| .++.|..+
T Consensus 72 ~~~~Ig~~~~Ig~~~~i~~gv~Ig~~ 97 (145)
T cd03349 72 GDVIIGNDVWIGHGATILPGVTIGDG 97 (145)
T ss_pred CCcEECCCCEECCCCEEeCCCEECCC
Confidence 34555555555555555 34444443
No 258
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=62.64 E-value=9.2 Score=34.53 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=20.6
Q ss_pred EeeeecCCceeCCCcEEEE-ceeCCCeEECCCcEEe
Q 002861 208 LSSKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVV 242 (873)
Q Consensus 208 ~~Svl~~~v~v~~~s~Ve~-s~l~~~v~IG~~~iis 242 (873)
..++|+.++.|+.++.+.. +.|++++.|+.+|.|.
T Consensus 53 ~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 53 RHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred CCCEECCCcEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 3445666666666666655 5555666666665554
No 259
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=62.59 E-value=12 Score=38.90 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=23.4
Q ss_pred eeeecCCceeCCCcEEEE---ceeCCCeEECCCcEEe
Q 002861 209 SSKIAHGVSIGEDSLIYD---SNISSGIQIGSLSIVV 242 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve~---s~l~~~v~IG~~~iis 242 (873)
+..|+.+|.|+.+++|.+ ..|+++|.||.+|.|.
T Consensus 75 ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~ 111 (203)
T PRK09527 75 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLS 111 (203)
T ss_pred CcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEE
Confidence 345677777777777744 4677777777777776
No 260
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=61.23 E-value=14 Score=45.62 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=11.5
Q ss_pred eeCCCeEECCCcEE-eCcCCCCC
Q 002861 228 NISSGIQIGSLSIV-VGTNFPEE 249 (873)
Q Consensus 228 ~l~~~v~IG~~~ii-sg~~i~~~ 249 (873)
+|++|+.||.+|+| -|+.|.++
T Consensus 162 ~IG~~~~IG~~s~I~~g~~Igd~ 184 (695)
T TIGR02353 162 TLGRDAFIGTRSTLDIDTSIGDG 184 (695)
T ss_pred EECCCcEECCCCEEcCCCEECCC
Confidence 45555555555555 34444443
No 261
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=60.41 E-value=6.4 Score=40.91 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=36.0
Q ss_pred CCCCeeeccCCCcCcC----CCCceEEEEEecCcc-----------ccccceEEEeCCCC
Q 002861 1 MTGDVLPCFDASTMIL----PEDASCIITVPITLD-----------IASNHGVIVAAKDG 45 (873)
Q Consensus 1 ~~gD~i~~~d~~~~~~----~~a~vtv~a~p~~~~-----------~a~~hGV~~~d~~~ 45 (873)
+.||+|..++...++. .++.+|++..+.+.. ...+.+++.+|+..
T Consensus 107 ~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 166 (214)
T cd04198 107 LSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADERDVIGLDEKT 166 (214)
T ss_pred EeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCCCCCceEEEcCCC
Confidence 4799999999888877 678999998887543 34578999999875
No 262
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=58.33 E-value=22 Score=39.03 Aligned_cols=50 Identities=26% Similarity=0.451 Sum_probs=33.2
Q ss_pred EEeeeecCCceeCCCcEEEEce-----eCCC----eEECCCcEEe-CcCCCCCCCCCccCccceeeCCCeee
Q 002861 207 VLSSKIAHGVSIGEDSLIYDSN-----ISSG----IQIGSLSIVV-GTNFPEEAGSTAEDSFRFMLPDRHCL 268 (873)
Q Consensus 207 V~~Svl~~~v~v~~~s~Ve~s~-----l~~~----v~IG~~~iis-g~~i~~~~~~~~~~~~~~~iP~~~~i 268 (873)
++++.++.+|.||+++.|.-.. |.++ |+||++|.|- ++.| + +.|.+++.|
T Consensus 191 iI~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I--G----------I~IGd~~VV 250 (319)
T TIGR03535 191 MVEGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL--G----------ISLGDDCVV 250 (319)
T ss_pred eEEEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE--C----------eEECCCCEE
Confidence 5577788888887777765433 3446 8888888872 3333 3 777777754
No 263
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=50.28 E-value=19 Score=36.81 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=18.9
Q ss_pred eeeecCCceeCCCcEE-EEceeCCCeEECCCcEE
Q 002861 209 SSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIV 241 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~V-e~s~l~~~v~IG~~~ii 241 (873)
+-.|+.+|.||+|+.| .+=.|++|+.||.||+|
T Consensus 119 hPtIg~~V~IGagAkILG~I~IGd~akIGA~sVV 152 (194)
T COG1045 119 HPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVV 152 (194)
T ss_pred CCccCCCeEECCCCEEEcceEECCCCEECCCceE
Confidence 3456666666666543 33345566666666655
No 264
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=49.74 E-value=11 Score=36.22 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=20.7
Q ss_pred eecCCceeCCCcEEEEc------eeCCCeEECCCcEEeCcC
Q 002861 211 KIAHGVSIGEDSLIYDS------NISSGIQIGSLSIVVGTN 245 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve~s------~l~~~v~IG~~~iisg~~ 245 (873)
-++..|.|+++++|--. +|+.+..||++|+|..|.
T Consensus 86 hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc 126 (184)
T KOG3121|consen 86 HIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCC 126 (184)
T ss_pred eecceEEEecceEeehhhheeeeEeccceeEcCceEhhhhe
Confidence 35556666666666544 455555666666665554
No 265
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=49.23 E-value=7.3 Score=39.91 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.7
Q ss_pred eeeceeeecchHHHHHHh
Q 002861 82 LDTGIIAVRGKAWEELVM 99 (873)
Q Consensus 82 ~~~Gi~~f~~~~~~~ll~ 99 (873)
+.+|+|+|+.+.+.+++.
T Consensus 147 ~~~g~yi~~~~~~~~~l~ 164 (200)
T cd02508 147 ASMGIYIFSKDLLIELLE 164 (200)
T ss_pred hcCEEEEEEHHHHHHHHH
Confidence 789999999999887775
No 266
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=46.53 E-value=33 Score=35.94 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=29.3
Q ss_pred eecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCC
Q 002861 211 KIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 211 vl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
+...+|.||++|.+.+++++..+.+|++..|.|-++.++
T Consensus 18 vv~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~d 56 (277)
T COG4801 18 VVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKD 56 (277)
T ss_pred EEeccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecc
Confidence 456677778888888888888888888888877776654
No 267
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=46.21 E-value=21 Score=36.09 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=27.4
Q ss_pred CceeCCCcEEE-EceeCCCeEECCCcEEeCc-CCCCCCCCCccCccceeeCCCeeeeeee
Q 002861 215 GVSIGEDSLIY-DSNISSGIQIGSLSIVVGT-NFPEEAGSTAEDSFRFMLPDRHCLWEVP 272 (873)
Q Consensus 215 ~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg~-~i~~~~~~~~~~~~~~~iP~~~~i~~v~ 272 (873)
.+.||+++||. +++|+++|+||+|++|--- .+-+ .+|++.+....|
T Consensus 124 ~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk------------dvp~~~iv~G~P 171 (190)
T COG0110 124 PVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK------------DVPPYGIVAGNP 171 (190)
T ss_pred CeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC------------ccCCCeEEeCCc
Confidence 35555555554 3556888888888887532 3222 378887554333
No 268
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=43.39 E-value=25 Score=37.11 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=28.7
Q ss_pred eeeecCCceeCCCcEEE-EceeCCCeEECCCcEEeC
Q 002861 209 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVG 243 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve-~s~l~~~v~IG~~~iisg 243 (873)
-|+++++|.|+++++|. |.+|.+..+||+++.|-.
T Consensus 27 f~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~ 62 (260)
T COG1043 27 FCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFP 62 (260)
T ss_pred eEEECCCcEECCCcEEcccEEEeCCeEECCCCEEec
Confidence 46889999999998885 567789999999998753
No 269
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=43.11 E-value=17 Score=34.47 Aligned_cols=86 Identities=15% Similarity=0.010 Sum_probs=45.2
Q ss_pred eeeccCCCcCcCCCCceEEEEEecCccccccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceee
Q 002861 5 VLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDT 84 (873)
Q Consensus 5 ~i~~~d~~~~~~~~a~vtv~a~p~~~~~a~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~ 84 (873)
++|+||...--|...|+--.-.=...+....||++++++.+++.. ..-+-+...=++...-.+.+.+.. -..
T Consensus 30 ~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR~~~~n~-------~~~i~~~~~~e~~~~~l~~r~~~~-~I~ 101 (122)
T PF06058_consen 30 VVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNRRSTENF-------VEPITPDLDFELQDPYLIYRNDNQ-EIY 101 (122)
T ss_dssp EEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEESSSS--E-------EEEE-SGGGEEEETTEEEEEETTT-EEE
T ss_pred EEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecCCCCCce-------eeecCCCcEEEEeCCEEEEEcCCc-eEE
Confidence 589999888888544443322223344556799999999974331 111222222111111111222222 568
Q ss_pred ceeeecchHHHHHH
Q 002861 85 GIIAVRGKAWEELV 98 (873)
Q Consensus 85 Gi~~f~~~~~~~ll 98 (873)
|+|+|+.+--++..
T Consensus 102 GiWf~~~~d~~ri~ 115 (122)
T PF06058_consen 102 GIWFYDDEDRQRIY 115 (122)
T ss_dssp EEEESSHHHHHHHH
T ss_pred EEEEEeHHHHHHHH
Confidence 99999987665543
No 270
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=40.89 E-value=40 Score=34.55 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=13.9
Q ss_pred eeCCCeEECCCcEEeCcC
Q 002861 228 NISSGIQIGSLSIVVGTN 245 (873)
Q Consensus 228 ~l~~~v~IG~~~iisg~~ 245 (873)
.|+++|.||.|+.|-|=+
T Consensus 121 tIg~~V~IGagAkILG~I 138 (194)
T COG1045 121 TIGNGVYIGAGAKILGNI 138 (194)
T ss_pred ccCCCeEECCCCEEEcce
Confidence 577888899988877653
No 271
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=35.70 E-value=46 Score=34.88 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=36.9
Q ss_pred CceEEEEEecCcccc----ccceEEEeCCCCCcccccccccccceeecCCHHHHhhcCcccCCCccceeeceeeecchHH
Q 002861 19 DASCIITVPITLDIA----SNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAW 94 (873)
Q Consensus 19 a~vtv~a~p~~~~~a----~~hGV~~~d~~~~~~~~~~~~~v~~fl~KPs~~~l~~~~a~~~~~~~l~~~Gi~~f~~~~~ 94 (873)
++++.+..+.+.... ..+|| ++++++ +|..|.+||... +. +. .+......+|+|+|+.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~g---------~v~~~~~~~~~~--~~-~~--~~~~~~~n~giy~~~~~~l 184 (238)
T PRK13368 120 INVATLCAPISTEEEFESPNVVKV-VVDKNG---------DALYFSRSPIPS--RR-DG--ESARYLKHVGIYAFRRDVL 184 (238)
T ss_pred ccceeEEEEcCCHHHhcCcCCCEE-EECCCC---------CEEEeeCCCCCC--CC-CC--CCCceeEEEEEEEeCHHHH
Confidence 466656655543222 23444 445556 688898776221 10 00 1123478999999999988
Q ss_pred HHH
Q 002861 95 EEL 97 (873)
Q Consensus 95 ~~l 97 (873)
..+
T Consensus 185 ~~~ 187 (238)
T PRK13368 185 QQF 187 (238)
T ss_pred HHH
Confidence 763
No 272
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=34.68 E-value=47 Score=33.45 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=13.2
Q ss_pred ecCCceeCCCcEEEEc-eeCCCeEECCCcEEeC
Q 002861 212 IAHGVSIGEDSLIYDS-NISSGIQIGSLSIVVG 243 (873)
Q Consensus 212 l~~~v~v~~~s~Ve~s-~l~~~v~IG~~~iisg 243 (873)
|+.+|.||.+++|-.= .|+++..||.++++++
T Consensus 127 IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk 159 (190)
T COG0110 127 IGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK 159 (190)
T ss_pred ECCCeEEcCccEECCCEEECCCcEEeeCCEEeC
Confidence 3444444444333332 3444444444444444
No 273
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=33.36 E-value=26 Score=33.87 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=16.0
Q ss_pred EceeCCCeEECCCcEEeCcCCCCC
Q 002861 226 DSNISSGIQIGSLSIVVGTNFPEE 249 (873)
Q Consensus 226 ~s~l~~~v~IG~~~iisg~~i~~~ 249 (873)
.-+|++.|-|++.|++.-+-|.+.
T Consensus 84 p~hiGdhVFieE~cVVnAAqIgsy 107 (184)
T KOG3121|consen 84 PVHIGDHVFIEEECVVNAAQIGSY 107 (184)
T ss_pred eeeecceEEEecceEeehhhheee
Confidence 346677777777777776666554
No 274
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=31.65 E-value=52 Score=32.11 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=23.4
Q ss_pred eeeecCCceeCCCcEEEEcee----CCCeEECCCcEEeC
Q 002861 209 SSKIAHGVSIGEDSLIYDSNI----SSGIQIGSLSIVVG 243 (873)
Q Consensus 209 ~Svl~~~v~v~~~s~Ve~s~l----~~~v~IG~~~iisg 243 (873)
.|-|-.+|+++++++|.-+.. .++..||+||||.-
T Consensus 20 Es~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEE 58 (190)
T KOG4042|consen 20 ESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEE 58 (190)
T ss_pred ecccccceEecCCcEecceEEEEcccCCEEEccCchhhh
Confidence 455566677777776665544 36788888888753
No 275
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=27.49 E-value=63 Score=34.78 Aligned_cols=39 Identities=23% Similarity=0.414 Sum_probs=24.8
Q ss_pred ceeEEeeeecCC----ceeCCCcEEE-EceeCCCeEECCCcEEe
Q 002861 204 SAVVLSSKIAHG----VSIGEDSLIY-DSNISSGIQIGSLSIVV 242 (873)
Q Consensus 204 ~~~V~~Svl~~~----v~v~~~s~Ve-~s~l~~~v~IG~~~iis 242 (873)
|++++-.+|+|. ++|+++|.|. +|.+..+|.||+||+|.
T Consensus 167 gGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~ 210 (271)
T COG2171 167 GGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVA 210 (271)
T ss_pred CcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEe
Confidence 445556677765 5566666665 34466677777777774
No 276
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=22.93 E-value=80 Score=30.89 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=21.9
Q ss_pred ceeCCCcEE-EEceeCCCeEECCCcEEe
Q 002861 216 VSIGEDSLI-YDSNISSGIQIGSLSIVV 242 (873)
Q Consensus 216 v~v~~~s~V-e~s~l~~~v~IG~~~iis 242 (873)
|+|.++++| +.|.|.+++.|+++|+|.
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvH 36 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVH 36 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEec
Confidence 566666655 678899999999999986
No 277
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=21.18 E-value=1.1e+02 Score=39.27 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=28.9
Q ss_pred ceeCCCcEEEEceeCCCeEECCCcE-EeCcCCCCCCCCCccCccceeeCCCeeeeeee
Q 002861 216 VSIGEDSLIYDSNISSGIQIGSLSI-VVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVP 272 (873)
Q Consensus 216 v~v~~~s~Ve~s~l~~~v~IG~~~i-isg~~i~~~~~~~~~~~~~~~iP~~~~i~~v~ 272 (873)
+.-++.+.|.||+|.+++++|++++ |..+.|..+. .+-.++--.-||.+..-..||
T Consensus 326 ~~~~~~~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~-~ig~~~Iisgv~~~~~~~~vP 382 (974)
T PRK13412 326 VKPHPAMFVQNAVLSGKLTAENATLWIENSHVGEGW-KLASRSIITGVPENSWNLDLP 382 (974)
T ss_pred cCCCCceEEEeeEecCCcccCCCeEEEEeeEecCCe-EEcCCcEEecccccccceecC
Confidence 3334556677777777777777744 6655554432 111111123345554445566
No 278
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=20.52 E-value=1.2e+02 Score=31.94 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=44.7
Q ss_pred cceeEEeeeecCCceeCCCcEEEEceeCCCeEECCCcEEeCcCCCCCCCCCccCccceeeCCCee
Q 002861 203 ASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC 267 (873)
Q Consensus 203 ~~~~V~~Svl~~~v~v~~~s~Ve~s~l~~~v~IG~~~iisg~~i~~~~~~~~~~~~~~~iP~~~~ 267 (873)
.++.+.-++.+..+.+++++.|+--++..+++|+..|.++|=.+-++ +.-|-+++.
T Consensus 27 ~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~---------dayiGE~~s 82 (277)
T COG4801 27 KNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEN---------DAYIGEFSS 82 (277)
T ss_pred ccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcC---------ceEEeccce
Confidence 34566677888999999999999999999999999999998665443 366666663
Done!