Your job contains 1 sequence.
>002862
MAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQ
PGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIP
PSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVP
SISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSAD
GRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD
ELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVV
PIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVA
EAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLE
AKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEE
RRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDE
LKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEI
FQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKV
KDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDF
KASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKVRYLQ
LLHGKIADNFWRVAKSSVPLEMKASAGGYLTNS
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002862
(873 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2091171 - symbol:PRP40B "pre-mRNA-processing p... 1466 1.2e-166 2
TAIR|locus:2194894 - symbol:PRP40A "pre-mRNA-processing p... 1199 3.2e-134 2
UNIPROTKB|F1RQH2 - symbol:PRPF40A "Uncharacterized protei... 671 6.5e-69 2
RGD|1311401 - symbol:Prpf40a "PRP40 pre-mRNA processing f... 682 4.0e-67 1
MGI|MGI:1860512 - symbol:Prpf40a "PRP40 pre-mRNA processi... 681 5.1e-67 1
UNIPROTKB|O75400 - symbol:PRPF40A "Pre-mRNA-processing fa... 672 6.3e-66 1
UNIPROTKB|G3MZC7 - symbol:PRPF40A "Uncharacterized protei... 671 8.4e-66 1
ZFIN|ZDB-GENE-030131-274 - symbol:prpf40a "PRP40 pre-mRNA... 472 1.7e-61 3
UNIPROTKB|Q6NWY9 - symbol:PRPF40B "Pre-mRNA-processing fa... 450 2.0e-55 3
DICTYBASE|DDB_G0283543 - symbol:prp40 "FF domain-containi... 468 3.4e-55 2
MGI|MGI:1925583 - symbol:Prpf40b "PRP40 pre-mRNA processi... 450 1.1e-54 3
FB|FBgn0031492 - symbol:CG3542 species:7227 "Drosophila m... 423 3.8e-53 3
ASPGD|ASPL0000052549 - symbol:AN1249 species:162425 "Emer... 392 2.9e-51 2
UNIPROTKB|F1NQH4 - symbol:PRPF40A "Uncharacterized protei... 528 4.5e-51 2
POMBASE|SPAC4D7.13 - symbol:usp104 "U1 snRNP-associated p... 356 5.2e-48 2
WB|WBGene00014218 - symbol:ZK1098.1b species:6239 "Caenor... 375 6.1e-47 2
UNIPROTKB|F5H578 - symbol:PRPF40A "Pre-mRNA-processing fa... 365 1.1e-32 1
UNIPROTKB|F1NT10 - symbol:TCERG1 "Uncharacterized protein... 253 6.2e-29 4
MGI|MGI:1926421 - symbol:Tcerg1 "transcription elongation... 238 1.0e-28 4
UNIPROTKB|O14776 - symbol:TCERG1 "Transcription elongatio... 239 1.6e-28 4
WB|WBGene00022855 - symbol:tcer-1 species:6239 "Caenorhab... 265 4.8e-25 3
UNIPROTKB|F1MKU9 - symbol:TCERG1 "Uncharacterized protein... 239 1.8e-24 3
RGD|1311748 - symbol:Tcerg1 "transcription elongation reg... 238 2.5e-24 3
UNIPROTKB|F1RM10 - symbol:TCERG1 "Uncharacterized protein... 239 1.3e-23 3
SGD|S000001495 - symbol:PRP40 "U1 snRNP protein involved ... 171 1.3e-21 2
FB|FBgn0261641 - symbol:CG42724 species:7227 "Drosophila ... 205 4.0e-20 3
UNIPROTKB|H0YG38 - symbol:PRPF40A "Pre-mRNA-processing fa... 235 3.1e-18 2
CGD|CAL0003333 - symbol:orf19.3250 species:5476 "Candida ... 207 3.7e-13 1
WB|WBGene00022853 - symbol:ZK1127.6 species:6239 "Caenorh... 184 5.9e-11 1
MGI|MGI:1917821 - symbol:Tcerg1l "transcription elongatio... 170 1.5e-09 2
RGD|620033 - symbol:Wbp4 "WW domain binding protein 4" sp... 155 5.2e-08 2
MGI|MGI:109568 - symbol:Wbp4 "WW domain binding protein 4... 152 5.6e-08 2
UNIPROTKB|F1PCW3 - symbol:WBP4 "Uncharacterized protein" ... 147 5.3e-07 1
UNIPROTKB|G4MWS5 - symbol:MGG_08329 "DNA replication prot... 107 9.8e-07 4
ZFIN|ZDB-GENE-050522-342 - symbol:zgc:112384 "zgc:112384"... 146 1.2e-06 2
UNIPROTKB|Q17QQ6 - symbol:WBP4 "Uncharacterized protein" ... 148 1.6e-06 2
UNIPROTKB|B7Z4M2 - symbol:WBP4 "cDNA FLJ52917, highly sim... 138 4.8e-06 1
UNIPROTKB|O75554 - symbol:WBP4 "WW domain-binding protein... 138 5.4e-06 1
UNIPROTKB|Q5F457 - symbol:WBP4 "WW domain-binding protein... 135 1.3e-05 1
SGD|S000006356 - symbol:URN1 "Putative protein of unknown... 118 1.5e-05 2
UNIPROTKB|F1NXG2 - symbol:WBP4 "WW domain-binding protein... 134 1.7e-05 1
MGI|MGI:1916903 - symbol:Arhgap27 "Rho GTPase activating ... 130 2.6e-05 2
FB|FBgn0011606 - symbol:Klp3A "Kinesin-like protein at 3A... 134 7.9e-05 1
UNIPROTKB|C9JVK6 - symbol:WAC "WW domain-containing adapt... 115 0.00014 1
RGD|735202 - symbol:Arhgap27 "Rho GTPase activating prote... 133 0.00017 2
UNIPROTKB|Q6TLK4 - symbol:Arhgap27 "Rho GTPase-activating... 133 0.00017 2
GENEDB_PFALCIPARUM|PF11_0486 - symbol:PF11_0486 "MAEBL, p... 133 0.00018 1
UNIPROTKB|Q8IHP3 - symbol:PF11_0486 "MAEBL, putative" spe... 133 0.00018 1
FB|FBgn0037255 - symbol:Fip1 species:7227 "Drosophila mel... 123 0.00036 3
UNIPROTKB|C9JD58 - symbol:WAC "WW domain-containing adapt... 115 0.00040 1
UNIPROTKB|F1PR59 - symbol:ARHGAP12 "Uncharacterized prote... 134 0.00042 2
UNIPROTKB|B7Z6T0 - symbol:ARHGAP27 "Rho GTPase-activating... 121 0.00044 1
UNIPROTKB|J3QTA0 - symbol:WAC "WW domain-containing adapt... 115 0.00064 1
UNIPROTKB|E9PNT2 - symbol:ARHGAP27 "Rho GTPase-activating... 121 0.00095 1
ZFIN|ZDB-GENE-030131-2624 - symbol:waca "WW domain contai... 120 0.00096 1
>TAIR|locus:2091171 [details] [associations]
symbol:PRP40B "pre-mRNA-processing protein 40B"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008380 "RNA splicing" evidence=IPI]
[GO:0070063 "RNA polymerase binding" evidence=IPI]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006355 GO:GO:0008380 GO:GO:0006351 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AP000417 Gene3D:1.10.10.440 InterPro:IPR002713
Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698 IPI:IPI00525827
IPI:IPI01020219 PIR:T52396 RefSeq:NP_188601.4 UniGene:At.27544
HSSP:O75400 ProteinModelPortal:F4JCC1 SMR:F4JCC1 PRIDE:F4JCC1
EnsemblPlants:AT3G19670.1 GeneID:821504 KEGG:ath:AT3G19670
TAIR:At3g19670 KO:K12821 OMA:SHERPSQ InterPro:IPR027237
PANTHER:PTHR11864:SF0 Uniprot:F4JCC1
Length = 992
Score = 1466 (521.1 bits), Expect = 1.2e-166, Sum P(2) = 1.2e-166
Identities = 304/594 (51%), Positives = 393/594 (66%)
Query: 222 QPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPD 281
+P ++ TDW EHTSADGR+Y+FNKRT+ STW+KP ELMT ERADA TDWKE +SPD
Sbjct: 198 KPLPSQKALTDWVEHTSADGRKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPD 257
Query: 282 GRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPN-SQTSISFPSSVVKAPS 340
GRKYYYNK+TKQS W++P+E+K+ REQAE AS++G +E + S+ ++ AP+
Sbjct: 258 GRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQGPHAEGIIDASEVLTRSDTASTAAPT 317
Query: 341 SADIXXXXXXXXXXXXXXXXXXXXXXXTQPALXXXXXXXXXXXXXXXANADGFPKTVDAI 400
QPA N D + D
Sbjct: 318 GLP------SQTSTSEGVEKLTLTSDLKQPA-------SVPGSSSPVENVDRVQMSADET 364
Query: 401 APMIDVSSSIGEAV--TDNTVAEA--KNNLS--NMSASDLVGA--SDKVPPPVTEETRKD 452
+ + D S + G +V T+ + A K+ +S N SD + +++ +E++K
Sbjct: 365 SQLCDTSETDGLSVPVTETSAATLVEKDEISVGNSGDSDDMSTKNANQGSGSGPKESQKP 424
Query: 453 AVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRR 512
V EKV EEK + QE F++ NKLEA + FK+LL+SA VGSDWTW+QA+R IIND+R
Sbjct: 425 MVESEKVESQTEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKR 484
Query: 513 YGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAV 572
YGALRTLGERK AFNE+L Q K+ EER + KK +D+K+MLEE VELT STRWSK V
Sbjct: 485 YGALRTLGERKQAFNEFLLQTKRAAEEERLARQKKLYEDFKRMLEECVELTPSTRWSKTV 544
Query: 573 TMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKA 632
TMFE+DERFKALERE+DR+++F+DH+ ELK+K R KA E+RKRNIIEY++FLESC+FIK
Sbjct: 545 TMFEDDERFKALEREKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKP 604
Query: 633 NTQWRKVQDRLEADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRD 692
N+QWRKVQDRLE DERCSRL+K+D+LEIF K ERK+RD
Sbjct: 605 NSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVERKHRD 664
Query: 693 EFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQ 752
EF L++ +A G LTAKT WRDY +KVKD P Y A+ASN+SG+TPKDLFED VE+L+K+
Sbjct: 665 EFHGLLDEHIATGELTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKR 724
Query: 753 FQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL 806
E K++IKD +KLRK+ LS+ TF++FK S+ ED P I DV LKL+FDDLL
Sbjct: 725 DHELKSQIKDVLKLRKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLL 778
Score = 177 (67.4 bits), Expect = 1.2e-166, Sum P(2) = 1.2e-166
Identities = 55/187 (29%), Positives = 82/187 (43%)
Query: 4 MANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGG 63
MANN Y G Q P Q P S+D PRGF PP+ Q+ P + APQ + ++SQ+FQ G
Sbjct: 1 MANNHQYPGIQ-PFQHPNASSIDLPRGFAPPMNFQFLPTIQAPQSEQVARLSSQNFQCVG 59
Query: 64 QGGLIMNAGFPSQPLQPPFRXXXXXXXXXXXXXXXXXXXXXXXXXXLPNAQPSNHIPP-S 122
+GG +++ G+P Q P +QP+ I +
Sbjct: 60 RGGTVLSIGYPPQSYAPQLLQSMHHSHERPSQLNQVQVQHVPLGPPTLISQPNVSIASGT 119
Query: 123 SLPRPNVQA----LSSYXXXXXXXXRPVAASYTFAPSSYGQPQLIG-NVNIGSQQPMSQM 177
SL +P VQ + + P A SY S PQ+ G +++ +QQ S +
Sbjct: 120 SLHQPYVQTPDIGMPGFGGPRALFSYPSATSYE---GSRVPPQVTGPSIHSQAQQRASII 176
Query: 178 HVPSISA 184
H + S+
Sbjct: 177 HTSAESS 183
Score = 144 (55.7 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 83/421 (19%), Positives = 171/421 (40%)
Query: 412 EAVTDNTVAEAKNNLSNMSASDLVGAS---DKVPPPVTEETRKDAVR--GEKVSDALEE- 465
E+ + N EA + ++ S VG+ ++ + + R A+R GE+ A E
Sbjct: 443 ESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLGER-KQAFNEF 501
Query: 466 -----KTVEQEHFAYANKLEAKNAFKALLESA-NVGSDWTWDQALRAIINDRRYGALRTL 519
+ E+E A KL FK +LE + W + + +D R+ AL
Sbjct: 502 LLQTKRAAEEERLARQKKLYED--FKRMLEECVELTPSTRWSKTVTMFEDDERFKALERE 559
Query: 520 GERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDE 579
+R+ F +++ + K++ + K+ +YK+ LE + +++W K E DE
Sbjct: 560 KDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKPNSQWRKVQDRLEVDE 619
Query: 580 RFKALERERDRKDMFDDHLDELK--QKERAKAQEERKRNII-----EYRKFLE---SCDF 629
R LE+ D+ ++F ++L +L+ ++E+ K Q+E + + E+ L+ +
Sbjct: 620 RCSRLEKI-DQLEIFQEYLRDLEREEEEKKKIQKEELKKVERKHRDEFHGLLDEHIATGE 678
Query: 630 IKANTQWRKVQDRLEADERCSRLDKMDRLEIFXXXXXXXXXXX-XXXXXXXXXXXSKTER 688
+ A T WR L K+ L ++ K +
Sbjct: 679 LTAKTIWRDY------------LMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKRDH 726
Query: 689 KNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEE 748
+ + + + +++ L+A + + ++ + + + + + DL E E+
Sbjct: 727 ELKSQIKDVLKLRKV--NLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLLERAKEK 784
Query: 749 LQKQFQEDKTRIKDAVKL----RKITLSSTWTFEDFKASVLEDATSPPISDVNL-KLIFD 803
+K+ ++ + + V + + IT SS+W E+ K V I D + K F+
Sbjct: 785 EEKEARKQTRQTEKLVDMLRSFKDITASSSW--EELKHLVEGSEKCSTIGDESFRKRCFE 842
Query: 804 D 804
D
Sbjct: 843 D 843
Score = 112 (44.5 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 37/165 (22%), Positives = 75/165 (45%)
Query: 456 GEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGA 515
G D E+ + + + K + K+ K L N+ + T+D+ +I D +
Sbjct: 707 GATPKDLFEDAVEDLKKRDHELKSQIKDVLK--LRKVNLSAGSTFDEFKVSISEDIGFPL 764
Query: 516 LRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMF 575
+ + K F++ L + K+++ +E R K + + ML ++T+S+ W + +
Sbjct: 765 IPDV-RLKLVFDDLLERAKEKEEKEAR-KQTRQTEKLVDMLRSFKDITASSSWEELKHLV 822
Query: 576 ENDERFKALERERDRKDMFDDHLDELK-QKERAKAQEERKRNIIE 619
E E+ + E RK F+D++ LK Q R K ++ ++ E
Sbjct: 823 EGSEKCSTIGDESFRKRCFEDYVSLLKEQSNRIKQNKKVPEDVRE 867
Score = 72 (30.4 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 50/246 (20%), Positives = 91/246 (36%)
Query: 388 ANADGF-PKTV--DAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASD--LVGASDKVP 442
+N+ G PK + DA+ + + + D + K NLS S D V S+ +
Sbjct: 703 SNSSGATPKDLFEDAVEDLKKRDHELKSQIKD-VLKLRKVNLSAGSTFDEFKVSISEDIG 761
Query: 443 PPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQ 502
P+ + R V D LE ++E A + + L ++ + +W++
Sbjct: 762 FPLIPDVRLKLV----FDDLLERAKEKEEKEARKQTRQTEKLVDMLRSFKDITASSSWEE 817
Query: 503 ALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQD---------AEERRLKLKKARDDYK 553
+ + + RK F +Y+ K+Q E+ R + K RD Y
Sbjct: 818 LKHLVEGSEKCSTIGDESFRKRCFEDYVSLLKEQSNRIKQNKKVPEDVREEHDKGRDKYG 877
Query: 554 KMLEESVELTSSTRWSK-AVTMFEND-ERFKALERERDRKDMFDDHLDE---LKQKERAK 608
+ + E S K A + +D ER R +D + H + +K+ +
Sbjct: 878 REKDRVRERDSDDHHKKGAAGKYNHDMNEPHGKERRRSGRDSHNRHRERHTSVKENDTDH 937
Query: 609 AQEERK 614
+E K
Sbjct: 938 FKESHK 943
Score = 53 (23.7 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 685 KTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFED 744
K RK + KL++ + +TA ++W + V+ S + S K FED
Sbjct: 787 KEARKQTRQTEKLVDMLRSFKDITASSSWEELKHLVEGSEKCSTIGDE---SFRKRCFED 843
Query: 745 VVEELQKQFQEDKTRIK 761
V L++Q K K
Sbjct: 844 YVSLLKEQSNRIKQNKK 860
Score = 45 (20.9 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 287 YNKVTKQSKWSLPDELKLAREQAEKASIKGTQS 319
+ +T S W +ELK E +EK S G +S
Sbjct: 806 FKDITASSSW---EELKHLVEGSEKCSTIGDES 835
>TAIR|locus:2194894 [details] [associations]
symbol:PRP40A "pre-mRNA-processing protein 40A"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0005886 "plasma membrane" evidence=ISM]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0008380 "RNA
splicing" evidence=IPI] [GO:0070063 "RNA polymerase binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0006355 GO:GO:0008380 GO:GO:0006351 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AC007915 GO:GO:0016592 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
EMBL:AC020576 KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0
EMBL:AK316856 IPI:IPI00526992 IPI:IPI00548835 IPI:IPI00892236
IPI:IPI00900521 RefSeq:NP_001117438.1 RefSeq:NP_175113.2
UniGene:At.14888 UniGene:At.28268 HSSP:Q61051
ProteinModelPortal:B6EUA9 SMR:B6EUA9 PRIDE:B6EUA9
EnsemblPlants:AT1G44910.1 GeneID:841057 KEGG:ath:AT1G44910
TAIR:At1g44910 eggNOG:COG5104 OMA:WEKPLEL PhylomeDB:B6EUA9
ProtClustDB:CLSN2681520 Genevestigator:B6EUA9 Uniprot:B6EUA9
Length = 958
Score = 1199 (427.1 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
Identities = 260/554 (46%), Positives = 348/554 (62%)
Query: 270 ASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASI--KGTQSETSP---N 324
+++DW+E TS DGRKYYYNK TKQS W P EL E+A+ +++ + T E N
Sbjct: 186 SASDWQEHTSADGRKYYYNKRTKQSNWEKPLELMTPLERADASTVWKEFTTPEGKKYYYN 245
Query: 325 SQTSIS---FPSSVVKAPSSADIXXXXXXXXXXXXX-----XXXXXXXXXXTQPALXXXX 376
T S P + A A + T ++
Sbjct: 246 KVTKESKWTIPEDLKLAREQAQLASEKTSLSEAGSTPLSHHAASSSDLAVSTVTSVVPST 305
Query: 377 XXXXXXXXXXXANAD-GFPKT-VDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDL 434
A P T ++AP+ S +I + T+ T + +NLS+ A D
Sbjct: 306 SSALTGHSSSPIQAGLAVPVTRPPSVAPVTPTSGAISD--TEATTIKG-DNLSSRGADD- 361
Query: 435 VGASDKVPPPVTEETRKD-AVRGE-KVSDALEEKTVEQEHFAYANKLEAKNAFKALLESA 492
++D E K+ +V G+ +S A ++ VE E YA K EAK AFK+LLES
Sbjct: 362 --SNDGATAQNNEAENKEMSVNGKANLSPAGDKANVE-EPMVYATKQEAKAAFKSLLESV 418
Query: 493 NVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDY 552
NV SDWTW+Q L+ I++D+RYGALRTLGERK AFNEYLGQ+KK +AEERR + KKAR+++
Sbjct: 419 NVHSDWTWEQTLKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREEF 478
Query: 553 KKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEE 612
KMLEE EL+SS +WSKA+++FEND+RFKA++R RDR+D+FD+++ EL++KER KA EE
Sbjct: 479 VKMLEECEELSSSLKWSKAMSLFENDQRFKAVDRPRDREDLFDNYIVELERKEREKAAEE 538
Query: 613 RKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFXXXXXXXXXXX 672
++ + +YRKFLE+CD+IKA TQWRK+QDRLE D+RCS L+K+DRL F
Sbjct: 539 HRQYMADYRKFLETCDYIKAGTQWRKIQDRLEDDDRCSCLEKIDRLIGFEEYILDLEKEE 598
Query: 673 XXXXXXXXXXXSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASN 732
+ ERKNRD FR L+E VA G LTAKT W DYCI++KD P Y AVASN
Sbjct: 599 EELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAVASN 658
Query: 733 TSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPP 792
TSGSTPKDLFEDV EEL+KQ+ EDK+ +KDA+K RKI++ S+W FEDFK+++ ED ++
Sbjct: 659 TSGSTPKDLFEDVTEELEKQYHEDKSYVKDAMKSRKISMVSSWLFEDFKSAISEDLSTQQ 718
Query: 793 ISDVNLKLIFDDLL 806
ISD+NLKLI+DDL+
Sbjct: 719 ISDINLKLIYDDLV 732
Score = 433 (157.5 bits), Expect = 4.2e-48, Sum P(2) = 4.2e-48
Identities = 99/230 (43%), Positives = 132/230 (57%)
Query: 122 SSLPRPNVQALSSYXXXXXXXXRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPS 181
S+ P+PN ++ + P ++ YTF PSSY Q Q V QP SQMHV
Sbjct: 92 STQPQPNAPPMTGFATSGP----PFSSPYTFVPSSYPQQQPTSLV-----QPNSQMHVAG 142
Query: 182 ISAGGQLGXXXXXXXXXXXXXXXXDEQMXXXXXXXXXXXXQPKSAEGVQTDWKEHTSADG 241
+ Q P+SA +DW+EHTSADG
Sbjct: 143 VPPAANTWPVPVNQSTSLVSPVQQTGQQTPVAVSTDPGNLTPQSA----SDWQEHTSADG 198
Query: 242 RRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301
R+YY+NKRT+ S W+KP ELMT +ERADAST WKEFT+P+G+KYYYNKVTK+SKW++P++
Sbjct: 199 RKYYYNKRTKQSNWEKPLELMTPLERADASTVWKEFTTPEGKKYYYNKVTKESKWTIPED 258
Query: 302 LKLAREQAEKASIKGTQSE--TSP-------NSQTSISFPSSVVKAPSSA 342
LKLAREQA+ AS K + SE ++P +S ++S +SVV + SSA
Sbjct: 259 LKLAREQAQLASEKTSLSEAGSTPLSHHAASSSDLAVSTVTSVVPSTSSA 308
Score = 147 (56.8 bits), Expect = 4.2e-48, Sum P(2) = 4.2e-48
Identities = 38/167 (22%), Positives = 85/167 (50%)
Query: 456 GEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGA 515
G D E+ T E E + +K K+A K+ ++ S W ++ AI D
Sbjct: 661 GSTPKDLFEDVTEELEKQYHEDKSYVKDAMKS--RKISMVSSWLFEDFKSAISEDLSTQQ 718
Query: 516 LRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMF 575
+ + K +++ +G+ K+++ +E R KL++ +++ +L E+T ++ W + +
Sbjct: 719 ISDIN-LKLIYDDLVGRVKEKEEKEAR-KLQRLAEEFTNLLHTFKEITVASNWEDSKQLV 776
Query: 576 ENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRK 622
E + ++++ E + +F++++ L++K + K ERKR+ + RK
Sbjct: 777 EESQEYRSIGDESVSQGLFEEYITSLQEKAKEK---ERKRDEEKVRK 820
Score = 137 (53.3 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
Identities = 48/160 (30%), Positives = 67/160 (41%)
Query: 26 DPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFP--SQPLQPPFR 83
+PP+ G +Q+RP+VP Q QH+VP ASQ F P G + + P SQP+Q
Sbjct: 4 NPPQSSG----TQFRPMVPGQQGQHFVPAASQPFHPYGHVPPNVQSQPPQYSQPIQQQ-- 57
Query: 84 XXXXXXXXXXXXXXXXXXXXXXXXXXLPNAQPSNHIPPSSL-PRPNVQALSSYXXXXXXX 142
+P Q + + S P+PN ++ +
Sbjct: 58 -----QLFPVRPGQPVHITSSSQAVSVPYIQTNKILTSGSTQPQPNAPPMTGFATSGP-- 110
Query: 143 XRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSI 182
P ++ YTF PSSY Q Q V QP SQMHV +
Sbjct: 111 --PFSSPYTFVPSSYPQQQPTSLV-----QPNSQMHVAGV 143
Score = 82 (33.9 bits), Expect = 2.9e-41, Sum P(2) = 2.9e-41
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 692 DEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQK 751
+EF L+ +T +NW D V++S Y ++ S + LFE+ + LQ+
Sbjct: 751 EEFTNLLHT---FKEITVASNWEDSKQLVEESQEYRSIGDE---SVSQGLFEEYITSLQE 804
Query: 752 QFQEDKTRIKDAVKLRK 768
+ +E K R +D K+RK
Sbjct: 805 KAKE-KERKRDEEKVRK 820
Score = 82 (33.9 bits), Expect = 2.9e-41, Sum P(2) = 2.9e-41
Identities = 46/198 (23%), Positives = 92/198 (46%)
Query: 431 ASDLVGASDK-VPPPVTEETRKDAVRGEK-VSDALEEKTVEQ-EHFAYANKLEAKNAFKA 487
AS+ G++ K + VTEE K + V DA++ + + + + + FK+
Sbjct: 656 ASNTSGSTPKDLFEDVTEELEKQYHEDKSYVKDAMKSRKISMVSSWLFED-------FKS 708
Query: 488 LLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEE-RRLKLK 546
+ S ++ + D L+ I +D G ++ E++ + L ++ + + +
Sbjct: 709 AI-SEDLSTQQISDINLKLIYDDL-VGRVKEKEEKEARKLQRLAEEFTNLLHTFKEITVA 766
Query: 547 KARDDYKKMLEESVELTSSTRWSKAVTMFEN-----DERFKALERERD----RKDMFDDH 597
+D K+++EES E S S + +FE E+ K ER+RD RK+ D
Sbjct: 767 SNWEDSKQLVEESQEYRSIGDESVSQGLFEEYITSLQEKAKEKERKRDEEKVRKEKERDE 826
Query: 598 LDELKQKERAKAQEERKR 615
++ K K++ + ++ER+R
Sbjct: 827 KEKRKDKDKERREKERER 844
Score = 80 (33.2 bits), Expect = 4.6e-41, Sum P(2) = 4.6e-41
Identities = 47/215 (21%), Positives = 91/215 (42%)
Query: 405 DVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALE 464
D S+I E ++ +++ NL + DLVG +V +E RK E+ ++ L
Sbjct: 705 DFKSAISEDLSTQQISDI--NLK-LIYDDLVG---RVKEKEEKEARKLQRLAEEFTNLLH 758
Query: 465 EKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKT 524
T ++ A +N ++K + E ++G + I + A ERK
Sbjct: 759 --TFKEITVA-SNWEDSKQLVEESQEYRSIGDESVSQGLFEEYITSLQEKAKEK--ERKR 813
Query: 525 AFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFE-----NDE 579
+ +K++ + E+R+ K K+ R+ ++ +E + S S T + DE
Sbjct: 814 DEEKVRKEKERDEKEKRKDKDKERREKEREREKEKGKERSKREESDGETAMDVSEGHKDE 873
Query: 580 RFKALERERDRKDMFDDHLDELKQKERAKAQEERK 614
+ K +R+R + ++ DE +R E +K
Sbjct: 874 KRKGKDRDRKHRRRHHNNSDEDVSSDRDDRDESKK 908
Score = 45 (20.9 bits), Expect = 2.2e-37, Sum P(2) = 2.2e-37
Identities = 27/114 (23%), Positives = 52/114 (45%)
Query: 542 RLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKAL-ERERDRKDMFDDHLDE 600
R+K K+ ++ +K+ + E T+ K +T+ N E K L E ++ + + D+ + +
Sbjct: 734 RVKEKEEKEA-RKLQRLAEEFTNLLHTFKEITVASNWEDSKQLVEESQEYRSIGDESVSQ 792
Query: 601 LKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDK 654
+E + +E+ + + RK E KV+ E DE+ R DK
Sbjct: 793 GLFEEYITSLQEKAKE--KERKRDEE-----------KVRKEKERDEKEKRKDK 833
>UNIPROTKB|F1RQH2 [details] [associations]
symbol:PRPF40A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0032465 "regulation of cytokinesis" evidence=IEA] [GO:0016477
"cell migration" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0007010 GO:GO:0016477 GO:GO:0008360
GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 KO:K12821 CTD:55660 GeneTree:ENSGT00530000062987
OMA:QETVADF EMBL:CU571020 EMBL:CU915608 RefSeq:NP_001231502.1
UniGene:Ssc.6297 Ensembl:ENSSSCT00000017278 GeneID:100157937
KEGG:ssc:100157937 Uniprot:F1RQH2
Length = 957
Score = 671 (241.3 bits), Expect = 6.5e-69, Sum P(2) = 6.5e-69
Identities = 177/599 (29%), Positives = 285/599 (47%)
Query: 225 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRK 284
+ G ++ W EH S DGR YY+N T+ STW+KP +L T E+ + WKE+ S G+
Sbjct: 138 ATSGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKP 197
Query: 285 YYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSA-- 342
YYYN TK+S+W+ P EL+ ++G Q+ S + S +++KA S+
Sbjct: 198 YYYNSQTKESRWAKPKELE---------DLEGYQNTIVAGSLITKSNLHAMIKAEESSKQ 248
Query: 343 DIXXXXXXXXXXXXXXXXXXXXXXXTQPALXXXXXXXXXXXXXXXANADGFPK---TVDA 399
+ + A ANA TV
Sbjct: 249 EECTTTSAAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASSTVGG 308
Query: 400 IAPMI---DVSSSIGEAV-TDNTVAEAKNNLSNMSASDLV-GASDKVPPPVTEETRK-DA 453
P++ +V+S + V +NTV + + ++++ V S +V EET K +A
Sbjct: 309 TVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAVQDQSVEVSSNTGEETSKQEA 368
Query: 454 VRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRY 513
V EE ++ + + K EAK AFK LL+ V S+ +W+QA++ IIND RY
Sbjct: 369 VADFTPKKEEEENQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRY 428
Query: 514 GALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVT 573
AL L E+K AFN Y Q +K++ EE R K K+A++ +++ LE ++TS+TR+ KA
Sbjct: 429 SALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQ 488
Query: 574 MFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKAN 633
MF E + A+ ERDR ++++D L L +KE+ +A++ RKRN + L++ + +
Sbjct: 489 MFGEMEVWNAIS-ERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYS 547
Query: 634 TQWRKVQDRL------EADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTE 687
T W + Q L DE +DK D L F + +
Sbjct: 548 TTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQ 607
Query: 688 RKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVE 747
RKNR+ F+ ++ G L + ++W + + + + GST DLF+ VE
Sbjct: 608 RKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQP-GSTALDLFKFYVE 666
Query: 748 ELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL 806
+L+ ++ ++K IKD +K + + TFEDF A + S + N+KL F+ LL
Sbjct: 667 DLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLL 725
Score = 49 (22.3 bits), Expect = 6.5e-69, Sum P(2) = 6.5e-69
Identities = 22/78 (28%), Positives = 26/78 (33%)
Query: 9 PYSGAQVPHQPPMVGSMDP--PRGFGPPIPSQYRPLVPAPQ---PQHYVPMASQHFQPGG 63
P G H PM M P R PP+P P + P P +P PG
Sbjct: 54 PSMGHPSMHYAPM--GMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMSSVMPGM 111
Query: 64 QGGLIMNAGFPSQPLQPP 81
+ A QP PP
Sbjct: 112 MMSHMSQASM--QPALPP 127
>RGD|1311401 [details] [associations]
symbol:Prpf40a "PRP40 pre-mRNA processing factor 40 homolog A
(S. cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0007010 "cytoskeleton organization"
evidence=IEA;ISO] [GO:0008360 "regulation of cell shape"
evidence=IEA;ISO] [GO:0016363 "nuclear matrix" evidence=IEA;ISO]
[GO:0016477 "cell migration" evidence=IEA;ISO] [GO:0032465
"regulation of cytokinesis" evidence=IEA;ISO] [GO:0070064
"proline-rich region binding" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 RGD:1311401
GO:GO:0007010 GO:GO:0016477 GO:GO:0008360 GO:GO:0016363
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
KO:K12821 CTD:55660 GeneTree:ENSGT00530000062987 OrthoDB:EOG418BN6
EMBL:CH473983 IPI:IPI00372759 RefSeq:NP_001099950.1
UniGene:Rn.95204 Ensembl:ENSRNOT00000006549 GeneID:295607
KEGG:rno:295607 UCSC:RGD:1311401 NextBio:639767 Uniprot:D3ZJ92
Length = 953
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 185/599 (30%), Positives = 289/599 (48%)
Query: 225 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRK 284
+A G ++ W EH S DGR YY+N T+ STW+KP +L T E+ + WKE+ S G+
Sbjct: 138 AASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKP 197
Query: 285 YYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAP-SSAD 343
YYYN TK+S+W+ P EL+ ++G Q+ + S +++KA SS
Sbjct: 198 YYYNSQTKESRWAKPKELE---------DLEGYQNTIVAGGLITKSNLHAMIKAEESSKQ 248
Query: 344 IXXXXXXXXXXXXXXXXXXXXXXXTQPALXXXXXXXXXXXXXXXANADGFP-KTVDAI-- 400
A AN P TV ++
Sbjct: 249 EECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTNTVGSVPV 308
Query: 401 APMIDVSSSIGEAV-TDNTV---AEAKNNLSNMSA-SDLVG--ASDKVPPPVTEETRKDA 453
AP +V+S + AV +NTV AE + L+N +A DL G +S+ P +ET D
Sbjct: 309 APEPEVTSIVATAVDNENTVTASAEEQAQLANTTALQDLSGDISSNTGEEPPKQETVTDF 368
Query: 454 VRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRY 513
K + EE ++ + + K EAK AFK LL+ V S+ +W+QA++ IIND RY
Sbjct: 369 T--PKKEE--EESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRY 424
Query: 514 GALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVT 573
AL L E+K AFN Y Q +K++ EE R K K+A++ +++ LE ++TS+TR+ KA
Sbjct: 425 SALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQ 484
Query: 574 MFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKAN 633
MF E + A+ ERDR ++++D L L +KE+ +A++ RKRN + L++ + +
Sbjct: 485 MFGEMEVWNAIS-ERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYS 543
Query: 634 TQWRKVQDRL------EADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTE 687
T W + Q L DE +DK D L F + +
Sbjct: 544 TTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQ 603
Query: 688 RKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVE 747
RKNR+ F+ ++ G L + ++W + + + + GST DLF+ VE
Sbjct: 604 RKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQP-GSTALDLFKFYVE 662
Query: 748 ELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL 806
+L+ ++ ++K IKD +K + + TFEDF A + S + N+KL F+ LL
Sbjct: 663 DLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLL 721
>MGI|MGI:1860512 [details] [associations]
symbol:Prpf40a "PRP40 pre-mRNA processing factor 40 homolog
A (yeast)" species:10090 "Mus musculus" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=ISO] [GO:0008360 "regulation
of cell shape" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=ISO;IDA]
[GO:0016477 "cell migration" evidence=ISO] [GO:0032465 "regulation
of cytokinesis" evidence=ISO] [GO:0070064 "proline-rich region
binding" evidence=IDA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 MGI:MGI:1860512
GO:GO:0007010 GO:GO:0016477 GO:GO:0008380 GO:GO:0008360
GO:GO:0016607 GO:GO:0006397 GO:GO:0070064 GO:GO:0016363
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
KO:K12821 eggNOG:COG5104 CTD:55660 HOVERGEN:HBG059634 EMBL:AF135439
EMBL:AK041205 EMBL:AK051375 EMBL:AK087963 EMBL:U40747
IPI:IPI00284213 IPI:IPI00338887 PIR:S64713 RefSeq:NP_061255.1
UniGene:Mm.257474 UniGene:Mm.392945 UniGene:Mm.393219
ProteinModelPortal:Q9R1C7 SMR:Q9R1C7 IntAct:Q9R1C7 STRING:Q9R1C7
PhosphoSite:Q9R1C7 PaxDb:Q9R1C7 PRIDE:Q9R1C7 DNASU:56194
Ensembl:ENSMUST00000076313 GeneID:56194 KEGG:mmu:56194
GeneTree:ENSGT00530000062987 HOGENOM:HOG000231802 InParanoid:Q9R1C7
OMA:QETVADF OrthoDB:EOG418BN6 NextBio:312006 Bgee:Q9R1C7
Genevestigator:Q9R1C7 GermOnline:ENSMUSG00000061136 Uniprot:Q9R1C7
Length = 953
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 184/599 (30%), Positives = 288/599 (48%)
Query: 225 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRK 284
+A G ++ W EH S DGR YY+N T+ STW+KP +L T E+ + WKE+ S G+
Sbjct: 138 AASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKP 197
Query: 285 YYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAP-SSAD 343
YYYN TK+S+W+ P EL+ ++G Q+ + S +++KA SS
Sbjct: 198 YYYNSQTKESRWAKPKELE---------DLEGYQNTIVAGGLITKSNLHAMIKAEESSKQ 248
Query: 344 IXXXXXXXXXXXXXXXXXXXXXXXTQPALXXXXXXXXXXXXXXXANADGFP-KTVDAI-- 400
A AN P TV ++
Sbjct: 249 EECTTASTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTNTVGSVPV 308
Query: 401 APMIDVSSSIGEAV-TDNTVA---EAKNNLSNMSA-SDLVG--ASDKVPPPVTEETRKDA 453
AP +V+S + AV +NTV E + L+N +A DL G +S+ P +ET D
Sbjct: 309 APEPEVTSIVATAVDNENTVTVSTEEQAQLANTTAIQDLSGDISSNTGEEPAKQETVSDF 368
Query: 454 VRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRY 513
K + EE ++ + + K EAK AFK LL+ V S+ +W+QA++ IIND RY
Sbjct: 369 T--PKKEE--EESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRY 424
Query: 514 GALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVT 573
AL L E+K AFN Y Q +K++ EE R K K+A++ +++ LE ++TS+TR+ KA
Sbjct: 425 SALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQ 484
Query: 574 MFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKAN 633
MF E + A+ ERDR ++++D L L +KE+ +A++ RKRN + L++ + +
Sbjct: 485 MFGEMEVWNAIS-ERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYS 543
Query: 634 TQWRKVQDRL------EADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTE 687
T W + Q L DE +DK D L F + +
Sbjct: 544 TTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQ 603
Query: 688 RKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVE 747
RKNR+ F+ ++ G L + ++W + + + + GST DLF+ VE
Sbjct: 604 RKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQP-GSTALDLFKFYVE 662
Query: 748 ELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL 806
+L+ ++ ++K IKD +K + + TFEDF A + S + N+KL F+ LL
Sbjct: 663 DLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLL 721
>UNIPROTKB|O75400 [details] [associations]
symbol:PRPF40A "Pre-mRNA-processing factor 40 homolog A"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IDA] [GO:0007010 "cytoskeleton
organization" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0008360 "regulation of cell shape" evidence=IMP]
[GO:0032465 "regulation of cytokinesis" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0007010 GO:GO:0051301 GO:GO:0016477 GO:GO:0008380
GO:GO:0008360 GO:GO:0016607 GO:GO:0006397 GO:GO:0007049
GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC079344
UniGene:Hs.643580 PDB:2DYF PDBsum:2DYF GO:GO:0032465
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 EMBL:AC012443 KO:K12821 eggNOG:COG5104
EMBL:AK000592 EMBL:AK024810 EMBL:AF049523 EMBL:AF049524
EMBL:AF049528 EMBL:BC011788 EMBL:BC027178 EMBL:U70667 EMBL:AF155096
EMBL:AF151059 IPI:IPI00337385 IPI:IPI00337386 IPI:IPI00337387
IPI:IPI00915929 RefSeq:NP_060362.3 PDB:1UZC PDB:1YWI PDB:1YWJ
PDB:1ZR7 PDB:2CQN PDB:2KZG PDB:2L5F PDB:2L9V PDB:2LKS PDBsum:1UZC
PDBsum:1YWI PDBsum:1YWJ PDBsum:1ZR7 PDBsum:2CQN PDBsum:2KZG
PDBsum:2L5F PDBsum:2L9V PDBsum:2LKS ProteinModelPortal:O75400
SMR:O75400 IntAct:O75400 MINT:MINT-1180299 STRING:O75400
PhosphoSite:O75400 PaxDb:O75400 PRIDE:O75400 DNASU:55660
Ensembl:ENST00000410080 GeneID:55660 KEGG:hsa:55660 UCSC:uc002tyi.2
CTD:55660 GeneCards:GC02M153508 HGNC:HGNC:16463 HPA:HPA038273
MIM:612941 neXtProt:NX_O75400 PharmGKB:PA28195 HOVERGEN:HBG059634
ChiTaRS:PRPF40A EvolutionaryTrace:O75400 GenomeRNAi:55660
NextBio:60391 PMAP-CutDB:O75400 ArrayExpress:O75400 Bgee:O75400
CleanEx:HS_PRPF40A Genevestigator:O75400 GermOnline:ENSG00000196504
Uniprot:O75400
Length = 957
Score = 672 (241.6 bits), Expect = 6.3e-66, P = 6.3e-66
Identities = 176/599 (29%), Positives = 286/599 (47%)
Query: 225 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRK 284
+A G ++ W EH S DGR YY+N T+ STW+KP +L T E+ + WKE+ S G+
Sbjct: 138 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKP 197
Query: 285 YYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSA-- 342
YYYN TK+S+W+ P EL+ ++G Q+ S + S +++KA S+
Sbjct: 198 YYYNSQTKESRWAKPKELE---------DLEGYQNTIVAGSLITKSNLHAMIKAEESSKQ 248
Query: 343 DIXXXXXXXXXXXXXXXXXXXXXXXTQPALXXXXXXXXXXXXXXXANADGFPK---TVDA 399
+ + A ANA+ TV
Sbjct: 249 EECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSG 308
Query: 400 IAPMI---DVSSSIGEAV-TDNTVAEAKNNLSNMSASDLV-GASDKVPPPVTEETRK-DA 453
P++ +V+S + V +NTV + + ++++ + S +V EET K +
Sbjct: 309 TVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQET 368
Query: 454 VRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRY 513
V EE ++ + + K EAK AFK LL+ V S+ +W+QA++ IIND RY
Sbjct: 369 VADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRY 428
Query: 514 GALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVT 573
AL L E+K AFN Y Q +K++ EE R K K+A++ +++ LE ++TS+TR+ KA
Sbjct: 429 SALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQ 488
Query: 574 MFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKAN 633
MF E + A+ ERDR ++++D L L +KE+ +A++ RKRN + L++ + +
Sbjct: 489 MFGEMEVWNAIS-ERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYS 547
Query: 634 TQWRKVQDRL------EADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTE 687
T W + Q L DE +DK D L F + +
Sbjct: 548 TTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQ 607
Query: 688 RKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVE 747
RKNR+ F+ ++ G L + ++W + + + + GST DLF+ VE
Sbjct: 608 RKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQP-GSTALDLFKFYVE 666
Query: 748 ELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL 806
+L+ ++ ++K IKD +K + + TFEDF A + S + N+KL F+ LL
Sbjct: 667 DLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLL 725
>UNIPROTKB|G3MZC7 [details] [associations]
symbol:PRPF40A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0032465 "regulation of cytokinesis" evidence=IEA] [GO:0016477
"cell migration" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0007010 GO:GO:0016477 GO:GO:0008360
GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 GeneTree:ENSGT00530000062987 OMA:QETVADF
EMBL:DAAA02004583 Ensembl:ENSBTAT00000063676 Uniprot:G3MZC7
Length = 958
Score = 671 (241.3 bits), Expect = 8.4e-66, P = 8.4e-66
Identities = 170/593 (28%), Positives = 274/593 (46%)
Query: 225 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRK 284
+ G ++ W EH S DGR YY+N T+ STW+KP +L T E+ + WKE+ S G+
Sbjct: 138 TTSGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKP 197
Query: 285 YYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADI 344
YYYN TK+S+W+ P EL+ E + + G+ T N I S
Sbjct: 198 YYYNSQTKESRWAKPKELE-DLEGYQNTIVAGSLI-TKSNLHAMIKAEESRYSKQEECTT 255
Query: 345 XXXXXXXXXXXXXXXXXXXXXXXTQPALXXXXXXXXXXXXXXXANADGFPKTVDAIAPMI 404
+ + + TV P++
Sbjct: 256 TSAAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASSTVSGTVPVV 315
Query: 405 ---DVSSSIGEAV-TDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRK-DAVRGEKV 459
+V+S + V +NTV + + ++++ V +V EET K + V
Sbjct: 316 PEPEVTSIVATVVDNENTVTISTEEQAQLTSTPSVQDQSEVSSNTGEETSKQETVADFTP 375
Query: 460 SDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTL 519
EE ++ + + K EAK AFK LL+ V S+ +W+QA++ IIND RY AL L
Sbjct: 376 KKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKL 435
Query: 520 GERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDE 579
E+K AFN Y Q +K++ EE R K K+A++ +++ LE ++TS+TR+ KA MF E
Sbjct: 436 SEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEME 495
Query: 580 RFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKV 639
+ A+ ERDR ++++D L L +KE+ +A++ RKRN + L++ + +T W +
Sbjct: 496 VWNAIS-ERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEA 554
Query: 640 QDRL------EADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRDE 693
Q L DE +DK D L F + +RKNR+
Sbjct: 555 QQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRES 614
Query: 694 FRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQF 753
F+ ++ G L + ++W + + + + GST DLF+ VE+L+ ++
Sbjct: 615 FQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQP-GSTALDLFKFYVEDLKARY 673
Query: 754 QEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL 806
++K IKD +K + + TFEDF A + S + N+KL F+ LL
Sbjct: 674 HDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLL 726
>ZFIN|ZDB-GENE-030131-274 [details] [associations]
symbol:prpf40a "PRP40 pre-mRNA processing factor 40
homolog A (yeast)" species:7955 "Danio rerio" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 ZFIN:ZDB-GENE-030131-274
Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
HSSP:O75400 KO:K12821 eggNOG:COG5104 OMA:WEKPLEL CTD:55660
HOVERGEN:HBG059634 GeneTree:ENSGT00530000062987
HOGENOM:HOG000231802 OrthoDB:EOG418BN6 EMBL:CR925815 EMBL:BC049307
IPI:IPI00503410 RefSeq:NP_938170.1 UniGene:Dr.76804 SMR:Q7ZUE4
STRING:Q7ZUE4 Ensembl:ENSDART00000081326 GeneID:321555
KEGG:dre:321555 InParanoid:Q7ZUE4 NextBio:20807424 Uniprot:Q7ZUE4
Length = 851
Score = 472 (171.2 bits), Expect = 1.7e-61, Sum P(3) = 1.7e-61
Identities = 129/424 (30%), Positives = 216/424 (50%)
Query: 394 PKTVDAIAPMIDVSSSIGE-AVTDNTVAEA--KNNLSNMSASDLVGASDKVPPPVTEETR 450
P T A+ + S ++ A T+ T+A + S++ A +SD V TEET
Sbjct: 201 PGTTPALTAQNESSVTVAPVAETEATMATGTIEEQPSHVPAQVAEVSSD-VAVNSTEET- 258
Query: 451 KDAVRGEKVSDALEEKTVE--QEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAII 508
+V + +D +E+ E ++ + + K EAK AFK LL+ V S+ +W+QA++ II
Sbjct: 259 -PSVETQPSNDVSKEERPELVKKVYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKLII 317
Query: 509 NDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRW 568
ND RY AL L E+K AFN Y Q +K++ EE R+K K++++ +++ LE ++TS+TR+
Sbjct: 318 NDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRY 377
Query: 569 SKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCD 628
KA MF + E + + ERDR ++++D L L +KE+ +A++ RKRN + L++
Sbjct: 378 KKAEQMFGDQEVWSCVP-ERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMA 436
Query: 629 FIKANTQWRKVQDRL------EADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXX 682
+ T W + Q L DE +DK D L F
Sbjct: 437 NVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLR 496
Query: 683 XSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLF 742
+ +RKNR+ F+K ++ G L + + W + + + + GSTP DLF
Sbjct: 497 ERRRQRKNRESFQKFLDELHDHGQLHSMSAWMEMYPTISADIRFSNMLGQP-GSTPLDLF 555
Query: 743 EDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIF 802
+ VE+L+ ++ ++K IKD +K + + FEDF + + D + + N+KL F
Sbjct: 556 KFYVEDLKARYHDEKRIIKDILKDKGFLVEINTGFEDFGSVISSDKRATTLDAGNIKLAF 615
Query: 803 DDLL 806
+ LL
Sbjct: 616 NSLL 619
Score = 222 (83.2 bits), Expect = 1.7e-61, Sum P(3) = 1.7e-61
Identities = 48/120 (40%), Positives = 68/120 (56%)
Query: 222 QPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPD 281
QPK ++ W EH S DG+ YY+N T+ STW+KP EL + E+ + WKE+ S
Sbjct: 105 QPKK----KSVWTEHKSLDGKIYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYKSDT 160
Query: 282 GRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFP--SSVVKAP 339
G+ YYYN TK+S+W+ P EL+ E KA GT +P + +++ SSV AP
Sbjct: 161 GKPYYYNSQTKESRWTKPKELE-DLEAMIKAEENGTADVVAPGTTPALTAQNESSVTVAP 219
Score = 120 (47.3 bits), Expect = 7.9e-51, Sum P(3) = 7.9e-51
Identities = 32/70 (45%), Positives = 37/70 (52%)
Query: 266 ERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQA-EKASIKGTQSETS-P 323
E+ + W E S DG+ YYYN TKQS W PDELK EQ K K +S+T P
Sbjct: 104 EQPKKKSVWTEHKSLDGKIYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYKSDTGKP 163
Query: 324 ---NSQTSIS 330
NSQT S
Sbjct: 164 YYYNSQTKES 173
Score = 108 (43.1 bits), Expect = 1.9e-20, Sum P(3) = 1.9e-20
Identities = 63/315 (20%), Positives = 134/315 (42%)
Query: 476 ANKLEAKN--AFKALLES-ANVGSDWTWDQALRAIINDRRYGA---LRTLGERKT--AFN 527
A +L +N A K +L++ ANV TW +A + ++++ + L+ + + F
Sbjct: 417 AKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFE 476
Query: 528 EYLGQKKKQDAEER-------RLKLKKARDDYKKMLEE---SVELTSSTRWSKAVTMFEN 577
E++ +K++ +E+ R + +K R+ ++K L+E +L S + W +
Sbjct: 477 EHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQLHSMSAWMEMYPTISA 536
Query: 578 DERFKALERERDRK--DMFDDHLDELKQKERAKAQEERK--RNIIEYRKFLESCDFIKAN 633
D RF + + D+F ++++LK A+ +E++ ++I++ + FL ++ N
Sbjct: 537 DIRFSNMLGQPGSTPLDLFKFYVEDLK----ARYHDEKRIIKDILKDKGFL-----VEIN 587
Query: 634 TQWRKVQDRLEADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRDE 693
T + + +D+R + LD + I K +RK
Sbjct: 588 TGFEDFGSVISSDKRATTLDAGN---IKLAFNSLLEKAEAREREREKEEARKMKRKEA-A 643
Query: 694 FRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQF 753
F+ +++ A L + W + P + + T S K +F+D + L+ +
Sbjct: 644 FKSMLKQ--ATPPLEPEATWEGVRERFLKEPAFEDI---TLESERKRIFKDFMHVLEHEC 698
Query: 754 QEDKTRIKDAVKLRK 768
Q ++ K K K
Sbjct: 699 QHHHSKTKKHSKKSK 713
Score = 101 (40.6 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 33/124 (26%), Positives = 60/124 (48%)
Query: 507 IINDRRYGALRTLGERKTAFNEYL----GQKKKQDAEERRLKLKKARDDYKKMLEESVE- 561
I +D+R L G K AFN L ++++++ EE R K+K+ +K ML+++
Sbjct: 597 ISSDKRATTLDA-GNIKLAFNSLLEKAEAREREREKEEAR-KMKRKEAAFKSMLKQATPP 654
Query: 562 LTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELK---QKERAKAQEERKRNII 618
L W F + F+ + E +RK +F D + L+ Q +K ++ K++
Sbjct: 655 LEPEATWEGVRERFLKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKTKKHSKKSKK 714
Query: 619 EYRK 622
+RK
Sbjct: 715 HHRK 718
Score = 67 (28.6 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 40/173 (23%), Positives = 75/173 (43%)
Query: 457 EKVSDALEEKTVEQEHFAYANKLEAKNA-FKALLESAN--VGSDWTWDQALRAIINDRRY 513
EK ++A E + ++E A K++ K A FK++L+ A + + TW+ + + +
Sbjct: 620 EK-AEAREREREKEE----ARKMKRKEAAFKSMLKQATPPLEPEATWEGVRERFLKEPAF 674
Query: 514 GALRTLGERKTAFNEYLG--QKKKQDAEERRLK-LKKARDDYKKMLE-----ESVELTSS 565
+ ERK F +++ + + Q + K KK++ ++K ES E
Sbjct: 675 EDITLESERKRIFKDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEEDEYH 734
Query: 566 TRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQE---ERKR 615
T+ K T E + E ER K K++ ++ + E ER+R
Sbjct: 735 TKKKKRSTSKSPSEHSSSGESERSYKKSKKHKKKGKKRRHKSGSPESEGERER 787
Score = 43 (20.2 bits), Expect = 1.7e-61, Sum P(3) = 1.7e-61
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 8 APYSGAQVPHQPPMV-GSMDPPR 29
AP G PPM+ G M PPR
Sbjct: 43 APPIGQMPAMMPPMMPGMMMPPR 65
>UNIPROTKB|Q6NWY9 [details] [associations]
symbol:PRPF40B "Pre-mRNA-processing factor 40 homolog B"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 EMBL:CH471111 Gene3D:2.20.70.10
SUPFAM:SSF51045 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SMART:SM00441 SUPFAM:SSF81698 HSSP:O75400 KO:K12821 eggNOG:COG5104
HOVERGEN:HBG059634 EMBL:AK027117 EMBL:AK123353 EMBL:AL137459
EMBL:AL834216 EMBL:BC050398 EMBL:BC067364 EMBL:AF049525
IPI:IPI00446681 IPI:IPI00465345 IPI:IPI00646529 IPI:IPI00789604
PIR:T46402 RefSeq:NP_001026868.2 UniGene:Hs.706827
ProteinModelPortal:Q6NWY9 SMR:Q6NWY9 STRING:Q6NWY9
PhosphoSite:Q6NWY9 DMDM:74736936 PaxDb:Q6NWY9 PRIDE:Q6NWY9
Ensembl:ENST00000261897 Ensembl:ENST00000380281 GeneID:25766
KEGG:hsa:25766 UCSC:uc001rup.1 UCSC:uc001ruq.1 UCSC:uc001rur.1
CTD:25766 GeneCards:GC12P049963 HGNC:HGNC:25031 HPA:HPA038426
HPA:HPA038599 neXtProt:NX_Q6NWY9 PharmGKB:PA143485582
InParanoid:Q6NWY9 OMA:QQLEEGP ChiTaRS:PRPF40B GenomeRNAi:25766
NextBio:46887 ArrayExpress:Q6NWY9 Bgee:Q6NWY9 CleanEx:HS_PRPF40B
Genevestigator:Q6NWY9 Uniprot:Q6NWY9
Length = 871
Score = 450 (163.5 bits), Expect = 2.0e-55, Sum P(3) = 2.0e-55
Identities = 112/351 (31%), Positives = 178/351 (50%)
Query: 464 EEKTVEQEH--FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGE 521
EE E E +++N+ +AK AFK LL V S+ +W+QA++ ++ D RY AL L E
Sbjct: 260 EESKPEPERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSE 319
Query: 522 RKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERF 581
+K AFN Y Q++K++ EE RL+ K+A+ + LE+ +TS+TR+ +A F E +
Sbjct: 320 KKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVW 379
Query: 582 KALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQD 641
A+ ERDRK+++DD L L +KE+ +A++ R+RNI + L+ + T W + Q
Sbjct: 380 -AVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQ 438
Query: 642 RL------EADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRDEFR 695
L D + +DK D L F + +RKNR+ F+
Sbjct: 439 YLMDNPSFAQDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQ 498
Query: 696 KLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQE 755
++ G L + + W + V + + GSTP DLF+ VEEL+ +F +
Sbjct: 499 TFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQP-GSTPLDLFKFYVEELKARFHD 557
Query: 756 DKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL 806
+K IKD +K R + FEDF + D + + N+KL F+ LL
Sbjct: 558 EKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLL 608
Score = 179 (68.1 bits), Expect = 2.0e-55, Sum P(3) = 2.0e-55
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
W EH + DGR YY+N + S W+KP L + E + WKE+ S G+ YYYN +K
Sbjct: 98 WSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSK 157
Query: 293 QSKWSLPDELKLAREQAEKASIKGTQSETSPNS 325
+S+W+ P +L E K G Q + P +
Sbjct: 158 ESRWTRPKDLD-DLEVLVKQEAAGKQQQQLPQT 189
Score = 96 (38.9 bits), Expect = 8.2e-16, Sum P(3) = 8.2e-16
Identities = 41/170 (24%), Positives = 74/170 (43%)
Query: 443 PPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESAN--VGSDWTW 500
P V+ + R + G+ S L+ E A + K K +L+ V + +
Sbjct: 521 PAVSTDVRFANMLGQPGSTPLDLFKFYVEELK-ARFHDEKKIIKDILKDRGFCVEVNTAF 579
Query: 501 DQALRAIINDRRYGALRTLGERKTAFNEYL----GQKKKQDAEERRLKLKKARDDYKKML 556
+ I D+R AL G K FN L ++++++ EE R ++++ ++ ML
Sbjct: 580 EDFAHVISFDKRAAALDA-GNIKLTFNSLLEKAEAREREREKEEAR-RMRRREAAFRSML 637
Query: 557 EESVE-LTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKE 605
++V L T W + F D F+ + E +R +F + L L+Q E
Sbjct: 638 RQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTE 687
Score = 91 (37.1 bits), Expect = 2.7e-15, Sum P(3) = 2.7e-15
Identities = 57/277 (20%), Positives = 120/277 (43%)
Query: 395 KTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAV 454
+ + A+ ++D SS+ T + + + + + + DK + E A+
Sbjct: 412 RNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQNMDKEDALICFEEHIRAL 471
Query: 455 RGEKVSDALEEKTVEQEHFAYANKLEAKNAF-KALLESANVGSDWTWDQALRAIINDRRY 513
E+ + E + + N+ EA F L E+ + S TW + A+ D R+
Sbjct: 472 EREEEEER-ERARLRERRQQRKNR-EAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRF 529
Query: 514 GALRTLGERKTA----FNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWS 569
+ LG+ + F Y+ + K + +E+++ +K D K VE+ ++
Sbjct: 530 ANM--LGQPGSTPLDLFKFYVEELKARFHDEKKI-IK----DILKDRGFCVEVNTAFEDF 582
Query: 570 KAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKR---NIIEYRKFL-E 625
V F D+R AL+ + K F+ L++ + +ER + +EE +R +R L +
Sbjct: 583 AHVISF--DKRAAALDAG-NIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQ 639
Query: 626 SCDFIKANTQWRKVQDRLEADERCSRLD-KMDRLEIF 661
+ ++ T W +V++R D ++ + +R+ +F
Sbjct: 640 AVPALELGTAWEEVRERFVCDSAFEQITLESERIRLF 676
Score = 82 (33.9 bits), Expect = 2.7e-45, Sum P(3) = 2.7e-45
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261
Q WKE+ S G+ YY+N +++ S W +P +L
Sbjct: 136 QCPWKEYKSDTGKPYYYNNQSKESRWTRPKDL 167
Score = 56 (24.8 bits), Expect = 2.0e-55, Sum P(3) = 2.0e-55
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 15 VPHQPP-MVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVP 53
+P PP ++ M PP G PP+ +Q +VP P +P
Sbjct: 31 IPPMPPGILPPMLPPMGAPPPL-TQIPGMVPPMMPGMLMP 69
Score = 52 (23.4 bits), Expect = 5.3e-55, Sum P(3) = 5.3e-55
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 19 PPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVP 53
PP + PP G PP+ SQ P +P P P +P
Sbjct: 9 PPGIPPPFPPMGL-PPM-SQRPPAIP-PMPPGILP 40
Score = 51 (23.0 bits), Expect = 4.3e-11, Sum P(4) = 4.3e-11
Identities = 18/85 (21%), Positives = 36/85 (42%)
Query: 465 EKTVEQEHFAYANKLEAKNAFKALLESANVGSDW--TWDQALRAIINDRRYGALRTLGER 522
E+ E+E + EA AF+++L A + W++ + D + + ER
Sbjct: 615 EREREKEEARRMRRREA--AFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESER 672
Query: 523 KTAFNEYLGQKKKQDAEERRLKLKK 547
F E+L ++ + + K +K
Sbjct: 673 IRLFREFLQVLEQTECQHLHTKGRK 697
Score = 44 (20.5 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 21/91 (23%), Positives = 43/91 (47%)
Query: 464 EEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALR-AIINDRRYGALRTLGER 522
++KT ++ H + + + E KA ES + D+ L+ A + +R G + +
Sbjct: 783 KKKTKKRRHKSNSPESETDPEEKAGKESDEKEQEQDKDRELQQAELPNRSPGF--GIKKE 840
Query: 523 KTAFNEYLGQKKKQDAEERRLKLKKARDDYK 553
KT ++ + + + E RR L + DD++
Sbjct: 841 KTGWDTSESELSEGELERRRRTLLQQLDDHQ 871
Score = 39 (18.8 bits), Expect = 4.3e-11, Sum P(4) = 4.3e-11
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 576 ENDERFKALERERDRKDMFDDHLDELKQKE 605
E D KA +E D K+ D EL+Q E
Sbjct: 799 ETDPEEKA-GKESDEKEQEQDKDRELQQAE 827
>DICTYBASE|DDB_G0283543 [details] [associations]
symbol:prp40 "FF domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0005685 "U1 snRNP"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS50020
SMART:SM00456 dictyBase:DDB_G0283543 GenomeReviews:CM000153_GR
EMBL:AAFI02000055 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0000398
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 GO:GO:0005685 KO:K12821 InterPro:IPR027237
PANTHER:PTHR11864:SF0 eggNOG:COG5104 RefSeq:XP_639002.1
ProteinModelPortal:Q54QY2 EnsemblProtists:DDB0233540 GeneID:8624132
KEGG:ddi:DDB_G0283543 InParanoid:Q54QY2 OMA:ERRIKQK Uniprot:Q54QY2
Length = 681
Score = 468 (169.8 bits), Expect = 3.4e-55, Sum P(2) = 3.4e-55
Identities = 104/335 (31%), Positives = 179/335 (53%)
Query: 464 EEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERK 523
+++ +Q+ NK + FK LL ++ S T+++AL++I ND RY L+T+ ERK
Sbjct: 163 QQQQQQQQQQQQQNKEDPIQTFKNLLTDNSISSICTFEKALKSIANDERYQVLKTMSERK 222
Query: 524 TAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKA 583
F +Y +KK + EE+R K KKA++D+ ++L +S E+T W +A FE++ R++A
Sbjct: 223 QVFLDYQVDRKKVEQEEKRKKEKKAKEDFIQLLRDSKEVTPLMSWRRASLYFESEPRWEA 282
Query: 584 LERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRL 643
+E ER+R+ + DH+ EL+Q+E+ + +K + R+ LE I TQWRKV+D+
Sbjct: 283 IESERERESLLHDHIQELEQQEKNQLMSIKKEQMKILRQKLELDPSITVFTQWRKVRDQF 342
Query: 644 EADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRDEFRKLMEADVA 703
E D+ LDK D L +F K RK+RD FR+L+
Sbjct: 343 ENDDVFQVLDKFDFLTVFENFIRDLEKKLDDQKRLEKEKLKKDSRKDRDNFRELLNEKFK 402
Query: 704 LGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDA 763
G L A T W+ + + ++ ++ ++ + GSTP +LF D +EL+ +++ D ++K+
Sbjct: 403 NGELHALTKWKIFKLNNENHQSFINLSQKSIGSTPLELFSDFKDELEIKYENDYKKLKEI 462
Query: 764 VKLRKITLS-STWTFEDFKASVLEDATSPPISDVN 797
+K S + T E K+ + + I + N
Sbjct: 463 LKETNFKYSPESTTLESLKSEFSKHSNYNLIQEFN 497
Score = 159 (61.0 bits), Expect = 3.4e-55, Sum P(2) = 3.4e-55
Identities = 36/114 (31%), Positives = 62/114 (54%)
Query: 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADAST---------DWKEFTS 279
+ +DW E ADG+++Y++K TRVS W+ P +L + ++ S DWKE+ +
Sbjct: 1 MSSDWVE-AIADGKKFYYHKVTRVSVWEIPEDLKSPAPSSNDSNSNNQPVIIGDWKEYKT 59
Query: 280 PDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQS-ETSPNSQTSISFP 332
G+KYYYN ++ +W P E + ++ A + T S + S + T+I+ P
Sbjct: 60 DKGQKYYYNTISGVRQWDAPPEFQ--QKLASTTTSTSTSSPQLSSSGSTTITTP 111
Score = 141 (54.7 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 50/191 (26%), Positives = 99/191 (51%)
Query: 463 LEEKTVEQEHFAYANKLEAKNAFKALL-ESANVGSDWTWDQALRAIINDRRYGALRTLGE 521
++ K VEQE K +AK F LL +S V +W +A ++ R+ A+ + E
Sbjct: 230 VDRKKVEQEEKRKKEK-KAKEDFIQLLRDSKEVTPLMSWRRASLYFESEPRWEAIESERE 288
Query: 522 RKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSS----TRWSKAVTMFEN 577
R++ ++++ Q+ +Q + + + +KK + K+L + +EL S T+W K FEN
Sbjct: 289 RESLLHDHI-QELEQQEKNQLMSIKK---EQMKILRQKLELDPSITVFTQWRKVRDQFEN 344
Query: 578 DERFKALER-------ERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDF- 629
D+ F+ L++ E +D+ + LD+ K+ E+ K +++ +++ +R+ L F
Sbjct: 345 DDVFQVLDKFDFLTVFENFIRDL-EKKLDDQKRLEKEKLKKDSRKDRDNFRELLNE-KFK 402
Query: 630 ---IKANTQWR 637
+ A T+W+
Sbjct: 403 NGELHALTKWK 413
Score = 92 (37.4 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 528 EYLGQKKKQDAEERRL-KLKKAR-DDYKKMLEESVELTSSTRWSKAVTMFENDERFKALE 585
EYL K K+++ E+ L K KK R +K +L E+ + S++WS + E+ + + L
Sbjct: 503 EYL--KYKEESREKNLAKKKKKRISQFKILLTETKVINKSSQWSDIQPIIESKKEYIDLG 560
Query: 586 RERDRKDMFDDHLDELKQKERAKAQEE 612
+++R +F D+++ L Q A +EE
Sbjct: 561 DDQERLRIFKDYIEFLVQN--ALDEEE 585
Score = 92 (37.4 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 33/121 (27%), Positives = 62/121 (51%)
Query: 547 KARDDYKKMLEESVELTSSTRWSKAVTMFEN--DERFKALERERDRKDMFDDHLDELKQK 604
K +DYKK L+E ++ T+ ++S T E+ E K ++ F +L+ LK K
Sbjct: 451 KYENDYKK-LKEILKETNF-KYSPESTTLESLKSEFSKHSNYNLIQEFNFLPYLEYLKYK 508
Query: 605 ERAKAQ---EERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRL-DKMDRLEI 660
E ++ + +++K+ I +++ L I ++QW +Q +E+ + L D +RL I
Sbjct: 509 EESREKNLAKKKKKRISQFKILLTETKVINKSSQWSDIQPIIESKKEYIDLGDDQERLRI 568
Query: 661 F 661
F
Sbjct: 569 F 569
>MGI|MGI:1925583 [details] [associations]
symbol:Prpf40b "PRP40 pre-mRNA processing factor 40 homolog
B (yeast)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 MGI:MGI:1925583 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
HSSP:O75400 KO:K12821 eggNOG:COG5104 HOVERGEN:HBG059634
GeneTree:ENSGT00530000062987 HOGENOM:HOG000231802 CTD:25766
ChiTaRS:PRPF40B EMBL:AF135440 EMBL:AK019183 EMBL:AK140075
EMBL:BC051961 EMBL:BC082994 IPI:IPI00377927 IPI:IPI00875105
IPI:IPI00876460 RefSeq:NP_061256.1 UniGene:Mm.358668
ProteinModelPortal:Q80W14 SMR:Q80W14 STRING:Q80W14
PhosphoSite:Q80W14 PaxDb:Q80W14 PRIDE:Q80W14
Ensembl:ENSMUST00000145482 GeneID:54614 KEGG:mmu:54614
UCSC:uc007xpg.1 UCSC:uc007xph.1 NextBio:311428 Bgee:Q80W14
Genevestigator:Q80W14 Uniprot:Q80W14
Length = 870
Score = 450 (163.5 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 108/344 (31%), Positives = 176/344 (51%)
Query: 469 EQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNE 528
E+ +++N+ +AK AFK LL V S+ +W+QA++ ++ D RY AL L E+K AFN
Sbjct: 267 ERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNA 326
Query: 529 YLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERER 588
Y Q++K++ EE RL+ K+A+ + LE+ +TS+TR+ +A F D A+ ER
Sbjct: 327 YKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTF-GDLEVWAVVPER 385
Query: 589 DRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRL----- 643
+RK+++DD L L +KE+ +A++ R+RNI + L+ + T W + Q L
Sbjct: 386 ERKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPS 445
Query: 644 -EADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRDEFRKLMEADV 702
D++ +DK D L F + +RKNR+ F+ ++
Sbjct: 446 FAQDQQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQSFLDELH 505
Query: 703 ALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKD 762
G L + + W + V + + GSTP DLF+ VEEL+ +F ++K IKD
Sbjct: 506 ETGQLHSMSTWMELYPAVSTDVRFANMLGQP-GSTPLDLFKFYVEELKARFHDEKKIIKD 564
Query: 763 AVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL 806
+K R + FEDF + D + + N+KL F+ LL
Sbjct: 565 ILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLL 608
Score = 172 (65.6 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 34/89 (38%), Positives = 51/89 (57%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
W EH + DGR YY+N + S W+KP L + E + WKE+ S G+ YYYN ++
Sbjct: 98 WSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQ 157
Query: 293 QSKWSLP---DELKLAREQAEKASIKGTQ 318
+S+W+ P D+L+ +Q E A + TQ
Sbjct: 158 ESRWTRPKDLDDLEALVKQ-ESAGKQQTQ 185
Score = 104 (41.7 bits), Expect = 7.1e-16, Sum P(3) = 7.1e-16
Identities = 51/229 (22%), Positives = 102/229 (44%)
Query: 443 PPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQ 502
P ++E +K A K EEK E+ A EAK + LE + T +
Sbjct: 315 PKLSE--KKQAFNAYKAQREKEEK--EE---ARLRAKEAKQTLQHFLEQHERMTSTTRYR 367
Query: 503 ALRAIINDRRYGALRTLGERKTAFNE---YLGQKKKQDAEERRLKLKKARDDYKKMLEES 559
D A+ ERK +++ +L +K+K+ A++ R + +A K +L+
Sbjct: 368 RAEQTFGDLEVWAVVPERERKEVYDDVLFFLAKKEKEQAKQLRRRNIQA---LKSILDGM 424
Query: 560 VELTSSTRWSKAVTM------FENDERFKALERERDRKDMFDDHL-----DELKQKERAK 608
+ T WS+A F D++ + +++E D F++H+ +E +++ERA+
Sbjct: 425 SSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMDKE-DALICFEEHIRALEREEEEERERAR 483
Query: 609 AQEER--KRNIIEYRKFLESCDF---IKANTQWRKVQDRLEADERCSRL 652
+E R ++N ++ FL+ + + + W ++ + D R + +
Sbjct: 484 LRERRQQRKNREAFQSFLDELHETGQLHSMSTWMELYPAVSTDVRFANM 532
Score = 94 (38.1 bits), Expect = 7.4e-15, Sum P(3) = 7.4e-15
Identities = 40/169 (23%), Positives = 71/169 (42%)
Query: 443 PPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESAN--VGSDWTW 500
P V+ + R + G+ S L+ E A + K K +L+ V + +
Sbjct: 521 PAVSTDVRFANMLGQPGSTPLDLFKFYVEELK-ARFHDEKKIIKDILKDRGFCVEVNTAF 579
Query: 501 DQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAE---ERRLKLKKARDDYKKMLE 557
+ I D+R AL G K FN L + + ++ E E ++++ ++ ML
Sbjct: 580 EDFAHVISFDKRAAALDA-GNIKLTFNSLLEKAEARETEREKEEARRMRRREAAFRSMLR 638
Query: 558 ESVE-LTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKE 605
++V L T W + F D F+ + E +R +F + L L+Q E
Sbjct: 639 QAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTE 687
Score = 90 (36.7 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 58/277 (20%), Positives = 120/277 (43%)
Query: 395 KTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAV 454
+ + A+ ++D SS+ T + + + + + + DK + E A+
Sbjct: 412 RNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMDKEDALICFEEHIRAL 471
Query: 455 RGEKVSDALEEKTVEQEHFAYANKLEAKNAF-KALLESANVGSDWTWDQALRAIINDRRY 513
E+ + E + + N+ EA +F L E+ + S TW + A+ D R+
Sbjct: 472 EREEEEER-ERARLRERRQQRKNR-EAFQSFLDELHETGQLHSMSTWMELYPAVSTDVRF 529
Query: 514 GALRTLGERKTA----FNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWS 569
+ LG+ + F Y+ + K + +E+++ +K D K VE+ ++
Sbjct: 530 ANM--LGQPGSTPLDLFKFYVEELKARFHDEKKI-IK----DILKDRGFCVEVNTAFEDF 582
Query: 570 KAVTMFENDERFKALERERDRKDMFDDHLD--ELKQKERAKAQEER-KRNIIEYRKFL-E 625
V F D+R AL+ + K F+ L+ E ++ ER K + R +R +R L +
Sbjct: 583 AHVISF--DKRAAALDAG-NIKLTFNSLLEKAEARETEREKEEARRMRRREAAFRSMLRQ 639
Query: 626 SCDFIKANTQWRKVQDRLEADERCSRLD-KMDRLEIF 661
+ ++ T W +V++R D ++ + +R+ +F
Sbjct: 640 AVPALELGTAWEEVRERFVCDSAFEQITLESERIRLF 676
Score = 81 (33.6 bits), Expect = 3.4e-45, Sum P(3) = 3.4e-45
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261
Q WKE+ S G+ YY+N +++ S W +P +L
Sbjct: 136 QCPWKEYKSDTGKPYYYNNQSQESRWTRPKDL 167
Score = 56 (24.8 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 15 VPHQPP-MVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVP 53
+P PP ++ M PP G PP+ +Q +VP P +P
Sbjct: 31 IPPMPPGILPPMLPPMGAPPPL-TQIPGMVPPMMPGMLMP 69
Score = 50 (22.7 bits), Expect = 4.6e-54, Sum P(3) = 4.6e-54
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 19 PPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVP 53
PP + PP G PP+ SQ P +P P P +P
Sbjct: 9 PPGLPPPFPPMGL-PPM-SQRPPAIP-PMPPGILP 40
Score = 49 (22.3 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
Identities = 21/93 (22%), Positives = 41/93 (44%)
Query: 457 EKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDW--TWDQALRAIINDRRYG 514
EK ++A E + E+E + EA AF+++L A + W++ + D +
Sbjct: 609 EK-AEARETER-EKEEARRMRRREA--AFRSMLRQAVPALELGTAWEEVRERFVCDSAFE 664
Query: 515 ALRTLGERKTAFNEYLGQKKKQDAEERRLKLKK 547
+ ER F E+L ++ + + K +K
Sbjct: 665 QITLESERIRLFREFLQVLEQTECQHLHTKGRK 697
>FB|FBgn0031492 [details] [associations]
symbol:CG3542 species:7227 "Drosophila melanogaster"
[GO:0017058 "FH1 domain binding" evidence=ISS] [GO:0005685 "U1
snRNP" evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 EMBL:AE014134 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0071011 GO:GO:0000398 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
GO:GO:0005685 KO:K12821 OMA:SHERPSQ InterPro:IPR027237
PANTHER:PTHR11864:SF0 HSSP:Q61051 GeneTree:ENSGT00530000062987
UniGene:Dm.4165 GeneID:33513 KEGG:dme:Dmel_CG3542
FlyBase:FBgn0031492 GenomeRNAi:33513 NextBio:783971 EMBL:AY058551
RefSeq:NP_608738.1 SMR:Q9VQK5 IntAct:Q9VQK5 STRING:Q9VQK5
EnsemblMetazoa:FBtr0077648 UCSC:CG3542-RA InParanoid:Q9VQK5
Uniprot:Q9VQK5
Length = 806
Score = 423 (154.0 bits), Expect = 3.8e-53, Sum P(3) = 3.8e-53
Identities = 107/338 (31%), Positives = 171/338 (50%)
Query: 475 YANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKK 534
+ +K EA +FK LL NV S+ WDQ ++ I D RY A + L ERK FN Y QK
Sbjct: 226 FKDKREAIESFKELLRDRNVPSNANWDQCVKIISKDPRYAAFKNLNERKQTFNAYKTQKI 285
Query: 535 KQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMF 594
K + EE RLK KKA++D ++ L S ++ S ++ + +F + A+ E DR+D++
Sbjct: 286 KDEREESRLKAKKAKEDLEQFLMSSDKMNSQMKYFRCEEVFAGTRTWTAVP-EPDRRDIY 344
Query: 595 DDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRL------EADER 648
+D + L ++E+ +A+ +KRN+ + LES I T W + Q L + D
Sbjct: 345 EDCIFNLAKREKEEARLLKKRNMKVLGELLESMTSINHATTWSEAQVMLLDNVAFKNDVT 404
Query: 649 CSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRDEFRKLMEADVALGTLT 708
+DK D L +F + +RKNRD F L+++ G LT
Sbjct: 405 LLGMDKEDALIVFEEHIRTLEKEEDEEREREKKRMKRQQRKNRDSFLALLDSLHEEGKLT 464
Query: 709 AKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRK 768
+ + W + + + A+ SGSTP DLF+ VE L+ +F ++K I++ +K +
Sbjct: 465 SMSLWVELYPIISADLRFSAMLGQ-SGSTPLDLFKFYVENLKARFHDEKKIIREILKEKA 523
Query: 769 ITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL 806
+ + +FEDF V ED S + N+KL ++ LL
Sbjct: 524 FVVQAKTSFEDFATVVCEDKRSASLDAGNVKLTYNSLL 561
Score = 194 (73.4 bits), Expect = 3.8e-53, Sum P(3) = 3.8e-53
Identities = 36/85 (42%), Positives = 52/85 (61%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKV 290
T+W EH + DGR YY+N+ T+ S+W+KP LMT E WKE+ S G+ YY+N
Sbjct: 54 TEWTEHKAPDGRPYYYNQNTKQSSWEKPEALMTPAELLHNQCPWKEYRSDTGKVYYHNVA 113
Query: 291 TKQSKWSLPDEL--KLAREQAEKAS 313
TK++ W P E A+ +AE+A+
Sbjct: 114 TKETCWEPPPEYVDMKAKAKAEEAA 138
Score = 117 (46.2 bits), Expect = 4.1e-45, Sum P(3) = 4.1e-45
Identities = 23/50 (46%), Positives = 27/50 (54%)
Query: 258 PFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLARE 307
P EL ST+W E +PDGR YYYN+ TKQS W P+ L E
Sbjct: 40 PPELAAAFGVMATSTEWTEHKAPDGRPYYYNQNTKQSSWEKPEALMTPAE 89
Score = 107 (42.7 bits), Expect = 6.9e-18, Sum P(3) = 6.9e-18
Identities = 27/131 (20%), Positives = 63/131 (48%)
Query: 534 KKQDAEERRLKLKKARD---DYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDR 590
KK D E + K R+ +K++L + + S+ W + V + D R+ A + +R
Sbjct: 215 KKDDKSESAVVFKDKREAIESFKELLRDR-NVPSNANWDQCVKIISKDPRYAAFKNLNER 273
Query: 591 KDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCS 650
K F+ + + + ER +++ + K+ + +FL S D + + ++ + ++ +
Sbjct: 274 KQTFNAYKTQKIKDEREESRLKAKKAKEDLEQFLMSSDKMNSQMKYFRCEEVFAGTRTWT 333
Query: 651 RLDKMDRLEIF 661
+ + DR +I+
Sbjct: 334 AVPEPDRRDIY 344
Score = 75 (31.5 bits), Expect = 9.8e-41, Sum P(3) = 9.8e-41
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADA 270
Q WKE+ S G+ YY N T+ + W+ P E + +A A
Sbjct: 94 QCPWKEYRSDTGKVYYHNVATKETCWEPPPEYVDMKAKAKA 134
Score = 54 (24.1 bits), Expect = 1.7e-12, Sum P(3) = 1.7e-12
Identities = 21/89 (23%), Positives = 45/89 (50%)
Query: 540 ERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLD 599
E+ + ++K +D+ K E++ S R K+ + +++ K R R D+ ++H++
Sbjct: 618 EKEIGVEKIWEDFVKESEDACSHHHS-RSRKS----KKNKKHKKRVRSVSRSDIENEHIE 672
Query: 600 -ELKQKERAKAQEERKRNI--IEYRKFLE 625
E ++ R+K + +I IE K L+
Sbjct: 673 VEKSKRRRSKTRSHSLTSIGSIESEKLLK 701
Score = 48 (22.0 bits), Expect = 3.8e-53, Sum P(3) = 3.8e-53
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 4 MANNAPYSGAQVPHQPP-MVGSMDPPRGFGPPIPSQ 38
+ N G + + PP + PP GFG P P +
Sbjct: 7 VGNGGAPPGRGIGYTPPGAIVPQFPPPGFGAPPPPE 42
Score = 45 (20.9 bits), Expect = 7.8e-53, Sum P(3) = 7.8e-53
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 19 PPMVGSMD-PP-RGFGPPIPSQYRPLVPAP 46
PP VG+ PP RG G P P P P
Sbjct: 4 PPSVGNGGAPPGRGIGYTPPGAIVPQFPPP 33
Score = 40 (19.1 bits), Expect = 4.6e-11, Sum P(3) = 4.6e-11
Identities = 38/216 (17%), Positives = 88/216 (40%)
Query: 395 KTVDAIAPMIDVSSSIGEAVT-DNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDA 453
+ + + +++ +SI A T +N++ + L+G + V EE +
Sbjct: 365 RNMKVLGELLESMTSINHATTWSEAQVMLLDNVAFKNDVTLLGMDKEDALIVFEEHIRTL 424
Query: 454 VRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRY 513
+ E E+K ++++ + A +L E + S W + I D R+
Sbjct: 425 EKEEDEEREREKKRMKRQQRKNRDSFLA--LLDSLHEEGKLTSMSLWVELYPIISADLRF 482
Query: 514 GALRTLGERKTA----FNEYLGQKKKQDAEERRL------------KLKKARDDYKKMLE 557
A+ LG+ + F Y+ K + +E+++ + K + +D+ ++
Sbjct: 483 SAM--LGQSGSTPLDLFKFYVENLKARFHDEKKIIREILKEKAFVVQAKTSFEDFATVVC 540
Query: 558 ESVELTSSTRWSKAVTMFENDERFKALERERDRKDM 593
E S + +T E+ +A+E+ER ++++
Sbjct: 541 EDKRSASLDAGNVKLTYNSLLEKAEAIEKERMKEEV 576
Score = 39 (18.8 bits), Expect = 5.8e-11, Sum P(3) = 5.8e-11
Identities = 35/187 (18%), Positives = 74/187 (39%)
Query: 447 EETRK-DAVRGEKVSDALEEKTVEQEHFAYANKL-EAKNAFKALLESANVGSDWTWDQAL 504
EE R+ + E ++ LE E + A KL E AF AL E +G + W+ +
Sbjct: 574 EEVRRLRKLENEIKNEWLEANVSVAEPYESAKKLVEHLEAF-ALYEK-EIGVEKIWEDFV 631
Query: 505 RAIINDRRYGALRTLGERKTA-FNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELT 563
+ + + R+ +K + + + D E ++++K++ K S+
Sbjct: 632 KESEDACSHHHSRSRKSKKNKKHKKRVRSVSRSDIENEHIEVEKSKRRRSKTRSHSLTSI 691
Query: 564 SSTRWSKAVTMFENDE-RFKALERERD-------------RKDMFDDHLDELKQKERAKA 609
S K + + + + + E D + D + H K+K+ +A
Sbjct: 692 GSIESEKLLKKKKKRKNKLRGSSCESDVPGIQSPGTQALLQNDS-NSHSPAKKKKKEKRA 750
Query: 610 QEERKRN 616
+++++ N
Sbjct: 751 KKDKRHN 757
>ASPGD|ASPL0000052549 [details] [associations]
symbol:AN1249 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 EMBL:BN001308
EMBL:AACD01000017 Gene3D:2.20.70.10 SUPFAM:SSF51045
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0
eggNOG:COG5104 OMA:WEKPLEL OrthoDB:EOG41VPBS RefSeq:XP_658853.1
ProteinModelPortal:Q5BDY0 EnsemblFungi:CADANIAT00001374
GeneID:2877027 KEGG:ani:AN1249.2 HOGENOM:HOG000207896
Uniprot:Q5BDY0
Length = 798
Score = 392 (143.0 bits), Expect = 2.9e-51, Sum P(2) = 2.9e-51
Identities = 92/334 (27%), Positives = 166/334 (49%)
Query: 475 YANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKK 534
Y + EA+ AF +L+ NV DWTW+Q +R I D +Y AL+ +RK AF +Y + +
Sbjct: 156 YGSLEEAEAAFMKMLKRHNVQPDWTWEQTMRETIKDPQYRALKDPRDRKIAFEKYAVEVR 215
Query: 535 KQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMF 594
Q+ + + + K R D+ ML+ E+ TRW + E + F++ E +R+ +F
Sbjct: 216 SQEKDRAKERFAKLRADFNTMLKRHPEIKHYTRWKTIRPIIEGETIFRSTNDENERRQLF 275
Query: 595 DDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQ------DRLEADER 648
++++ ELK++ K R+ + E L+S + ++ T+W + Q +R++ +E+
Sbjct: 276 EEYILELKKEHAEKEAAARRAAMDELVGILKSMN-LEPYTRWSEAQAIIQSNERVQNEEK 334
Query: 649 CSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRDEFRKLMEADVALGTLT 708
L K D L F ++ ER R++F +L+ + G +
Sbjct: 335 FKALSKSDILTAFENHIKSLERAFNDARQQQKAAKARKERHAREQFVELLNELRSKGVIK 394
Query: 709 AKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRK 768
A + W +++ P Y+ + N SGS+P DLF DVVEE ++ + + + D + +
Sbjct: 395 AGSKWSKIYPIIREDPRYLGILGN-SGSSPLDLFWDVVEEEERSLRGPRNDVLDVLDDNR 453
Query: 769 ITLSSTWTFEDFKASVLEDATSPPISDVNLKLIF 802
++S TFE+F + V D + I L++IF
Sbjct: 454 FDVTSKTTFEEFNSVVSSDRRTAKIDPEILQVIF 487
Score = 218 (81.8 bits), Expect = 2.9e-51, Sum P(2) = 2.9e-51
Identities = 41/91 (45%), Positives = 59/91 (64%)
Query: 223 PKSAE-GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPD 281
P +A G + W+E + +GR YY+N +T+ + W KP ELMT +ERA A+ WKE+T+
Sbjct: 3 PMNAPTGPASLWQEARTPEGRAYYYNVQTKATQWTKPVELMTPVERALANQPWKEYTAEG 62
Query: 282 GRKYYYNKVTKQSKWSLPDELKLAREQAEKA 312
GRKY+ N TK+S W +P+ K A QA+ A
Sbjct: 63 GRKYWSNSETKESTWEMPEAYKNALAQAQAA 93
Score = 93 (37.8 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 47/188 (25%), Positives = 83/188 (44%)
Query: 440 KVPPPVTEETRKDAVRGEKVSDALEE--KTVEQEHFAYANKLEAKNAFKALLESA--NVG 495
K+ P + E+ R + G S L+ VE+E + +N +L+ +V
Sbjct: 401 KIYPIIREDPRYLGILGNSGSSPLDLFWDVVEEEERSLRGP---RNDVLDVLDDNRFDVT 457
Query: 496 SDWTWDQALRAIINDRRYGA-----LRTLGER--KTAFNEYLGQKKKQDAEERRLKLKKA 548
S T+++ + +DRR L+ + +R + A +K D +RR +
Sbjct: 458 SKTTFEEFNSVVSSDRRTAKIDPEILQVIFQRIQEKALRRNEEEKHAADRHQRRA-IDAL 516
Query: 549 RDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAK 608
R K+ LE L S+ W + E + +KALE + R+ FD + LK+KE
Sbjct: 517 RSRLKR-LEPP--LRSTDTWDQVKPTLERYDEYKALESDELRQIAFDKVIRRLKEKEE-D 572
Query: 609 AQEERKRN 616
A+ +R+R+
Sbjct: 573 AERDRERD 580
Score = 93 (37.8 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 55/251 (21%), Positives = 109/251 (43%)
Query: 414 VTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHF 473
+ N + + +S SD++ A + + E DA + +K + A +E+ ++
Sbjct: 323 IQSNERVQNEEKFKALSKSDILTAFENHIKSL-ERAFNDARQQQKAAKARKERHAREQFV 381
Query: 474 AYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQK 533
N+L +K KA GS W+ + I D RY L LG ++ +
Sbjct: 382 ELLNELRSKGVIKA-------GSKWS--KIYPIIREDPRY--LGILGNSGSSPLDLFWDV 430
Query: 534 KKQDAEERRLKLKKARDDYKKMLEES-VELTSSTRWSKAVTMFENDERFKALERERDRKD 592
++ EER L+ R+D +L+++ ++TS T + + ++ +D R ++ E
Sbjct: 431 VEE--EER--SLRGPRNDVLDVLDDNRFDVTSKTTFEEFNSVVSSDRRTAKIDPEI--LQ 484
Query: 593 MFDDHLDE--LKQKERAK--AQEERKRNIIEYRKFLESCDF-IKANTQWRKVQDRLEADE 647
+ + E L++ E K A ++R I R L+ + +++ W +V+ LE +
Sbjct: 485 VIFQRIQEKALRRNEEEKHAADRHQRRAIDALRSRLKRLEPPLRSTDTWDQVKPTLERYD 544
Query: 648 RCSRLDKMDRL 658
L+ D L
Sbjct: 545 EYKALES-DEL 554
Score = 66 (28.3 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 41/203 (20%), Positives = 85/203 (41%)
Query: 457 EKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESAN--VGSDWTWDQALRAIINDRRYG 514
+++ + + E++H A ++ A +A ++ L+ + S TWDQ + Y
Sbjct: 488 QRIQEKALRRNEEEKHAADRHQRRAIDALRSRLKRLEPPLRSTDTWDQVKPTLERYDEYK 547
Query: 515 ALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTM 574
AL + R+ AF++ + + K+++ + R + RD + + R ++
Sbjct: 548 ALESDELRQIAFDKVIRRLKEKEEDAER---DRERDRDRGSRRDHHHDRDRDRDYRS--- 601
Query: 575 FENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANT 634
+ + R A R + + + +R KAQ +R+R+ YRK ++
Sbjct: 602 YRGERRGPASRHSRTPEP-------DAYEADRRKAQADRERS---YRKAASGLSPVRE-- 649
Query: 635 QWRKVQDRLEADERCSRLDKMDR 657
+W D + D R D+ DR
Sbjct: 650 RW----DERDRDRERDR-DRRDR 667
Score = 65 (27.9 bits), Expect = 8.5e-16, Sum P(2) = 8.5e-16
Identities = 29/108 (26%), Positives = 50/108 (46%)
Query: 510 DRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTR-- 567
DR Y + R GER+ + + + + DA E +KA+ D ++ ++ S R
Sbjct: 596 DRDYRSYR--GERRGPASRH-SRTPEPDAYEA--DRRKAQADRERSYRKAASGLSPVRER 650
Query: 568 WSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKR 615
W + E D + +R+RDR + L ++ER +EER+R
Sbjct: 651 WDERDRDRERDRDRRDRDRDRDR-ERSTRSLSHY-ERERRDREEERER 696
Score = 56 (24.8 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
Identities = 47/187 (25%), Positives = 78/187 (41%)
Query: 445 VTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQAL 504
V EE R ++RG + +D L+ ++ F +K + F +++ S + + L
Sbjct: 431 VEEEER--SLRGPR-NDVLD--VLDDNRFDVTSKTTFEE-FNSVVSSDRRTAKID-PEIL 483
Query: 505 RAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLK-----LKKAR--DDYKKMLE 557
+ I + ALR E K A + + Q++ DA RLK L+ D K LE
Sbjct: 484 QVIFQRIQEKALRRNEEEKHAADRH--QRRAIDALRSRLKRLEPPLRSTDTWDQVKPTLE 541
Query: 558 --------ESVELTSSTRWSKAVTMFENDERF--KALERERDRKDMFDDHLDELKQKERA 607
ES EL + K + + E + ER+RDR D H D + ++
Sbjct: 542 RYDEYKALESDELRQIA-FDKVIRRLKEKEEDAERDRERDRDRGSRRDHHHDRDRDRDYR 600
Query: 608 KAQEERK 614
+ ER+
Sbjct: 601 SYRGERR 607
Score = 40 (19.1 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 447 EETRKDAVRGEKVSDALEEKTV 468
E T AV G +A EEK V
Sbjct: 765 ERTPTSAVPGPAADEAKEEKAV 786
Score = 40 (19.1 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 30/155 (19%), Positives = 61/155 (39%)
Query: 507 IINDRRYGAL-RTLGERKTAFNEYLGQKK---KQDAEERRLKLKKARDDYKKMLEESVEL 562
+++D R+ +T E FN + + K D E ++ ++ ++ + EE
Sbjct: 448 VLDDNRFDVTSKTTFEE---FNSVVSSDRRTAKIDPEILQVIFQRIQEKALRRNEEEKH- 503
Query: 563 TSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRK 622
+ +A+ + R K LE D +D L++ + KA E + I + K
Sbjct: 504 AADRHQRRAIDALRS--RLKRLEPPLRSTDTWDQVKPTLERYDEYKALESDELRQIAFDK 561
Query: 623 FLESCDFIKANTQWRKVQDRLEADERCSRLDKMDR 657
+ + + + + +DR R D+ DR
Sbjct: 562 VIRRLKEKEEDAERDRERDRDRGSRRDHHHDR-DR 595
>UNIPROTKB|F1NQH4 [details] [associations]
symbol:PRPF40A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0007010 "cytoskeleton organization"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0016477 "cell
migration" evidence=IEA] [GO:0032465 "regulation of cytokinesis"
evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=IEA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 GO:GO:0007010 GO:GO:0016477
GO:GO:0008360 GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0032465 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SMART:SM00441 SUPFAM:SSF81698 OMA:SHERPSQ
GeneTree:ENSGT00530000062987 EMBL:AADN02017035 EMBL:AADN02017036
IPI:IPI00822687 Ensembl:ENSGALT00000037747 ArrayExpress:F1NQH4
Uniprot:F1NQH4
Length = 1076
Score = 528 (190.9 bits), Expect = 4.5e-51, Sum P(2) = 4.5e-51
Identities = 157/555 (28%), Positives = 244/555 (43%)
Query: 266 ERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQA-EKASIKGTQSETS-P 323
E + + W E SPDGR YYYN TKQS W PD+LK EQ K K +S++ P
Sbjct: 300 EHSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKP 359
Query: 324 ---NSQTSISFPSSVVKAPSSADIXXXXXXXXXXXXXXXXXXXXXXXTQPALXXXXXXXX 380
NSQT S + + + A
Sbjct: 360 YYYNSQTKESRWAKPKELEDLEALIKAEENSTKTEESASATSAAADAANTAATATAAAEA 419
Query: 381 XXXXXXXANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDK 440
A +T A A + + S++ A A + SA A+D
Sbjct: 420 ATAGTASTAAASDAETTAASAVVENESAAAATAEDQGQQATSAPAAQEQSAESAANAADD 479
Query: 441 VPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTW 500
++ DA + E DA K + + K EAK AFK LL+ V S+ +W
Sbjct: 480 SK----QDGSADASKKEG-DDAQPVKKT----YTWNTKEEAKQAFKELLKEKRVPSNASW 530
Query: 501 DQALRAIINDRRY---GALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLE 557
+QA++ IIND RY AL L E+K AFN Y Q +K++ EE R K K+A++ +++ LE
Sbjct: 531 EQAMKMIINDPRYRIRSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLE 590
Query: 558 ESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNI 617
++TS+TR+ KA MF E + A+ ERDR ++++D L L +KE+ +A++ RKRN
Sbjct: 591 NHEKMTSTTRYKKAEQMFGEMEVWNAIS-ERDRLEIYEDVLFFLSKKEKEQAKQLRKRNW 649
Query: 618 IEYRKFLESCDFIKANTQWRKVQDRL------EADERCSRLDKMDRLEIFXXXXXXXXXX 671
+ L++ + T W + Q L DE +DK D L F
Sbjct: 650 EALKNILDNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKE 709
Query: 672 XXXXXXXXXXXXSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVAS 731
+ +RKNR+ F+ ++ G L + ++W + + + +
Sbjct: 710 EEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLG 769
Query: 732 NTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSP 791
GST DLF+ VE+L+ ++ ++K IKD +K + + +FEDF + +
Sbjct: 770 QP-GSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRAT 828
Query: 792 PISDVNLKLIFDDLL 806
+ N+KL F+ LL
Sbjct: 829 TLDAGNIKLAFNSLL 843
Score = 224 (83.9 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 46/113 (40%), Positives = 67/113 (59%)
Query: 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNK 289
++ W EH S DGR YY+N T+ STW+KP +L T E+ + WKE+ S G+ YYYN
Sbjct: 305 KSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNS 364
Query: 290 VTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSA 342
TK+S+W+ P EL+ E KA T++E S S TS + ++ A ++A
Sbjct: 365 QTKESRWAKPKELE-DLEALIKAEENSTKTEESA-SATSAAADAANTAATATA 415
Score = 101 (40.6 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 43/190 (22%), Positives = 85/190 (44%)
Query: 443 PPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESAN--VGSDWTW 500
P ++ + R + G+ S AL+ E A + K K +L+ V + ++
Sbjct: 756 PTISSDIRFTNMLGQPGSTALDLFKFYVEDLK-ARYHDEKKIIKDILKDKGFVVEVNTSF 814
Query: 501 DQALRAIINDRRYGALRTLGERKTAFNEYL----GQKKKQDAEERRLKLKKARDDYKKML 556
+ + I + +R L G K AFN L ++++++ EE R K+K+ +K ML
Sbjct: 815 EDFVTVISSTKRATTLDA-GNIKLAFNSLLEKAEAREREREKEEAR-KMKRKESAFKSML 872
Query: 557 EESVE-LTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELK---QKERAKAQEE 612
+++ + W F + F+ + E +RK +F D + L+ Q +K ++
Sbjct: 873 KQATPPIELDAVWEDIRDRFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKH 932
Query: 613 RKRNIIEYRK 622
K++ +RK
Sbjct: 933 SKKSKKHHRK 942
Score = 62 (26.9 bits), Expect = 4.5e-51, Sum P(2) = 4.5e-51
Identities = 23/73 (31%), Positives = 29/73 (39%)
Query: 15 VPHQPPM-VGSMD--PPRGFGPPIPSQYRPLVPAPQ---PQHYVPMASQHFQPGGQGGLI 68
+PH PPM + M PP PP+P P + P P +P Q PG +
Sbjct: 193 MPHYPPMGMHPMGQRPPNM--PPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMMMSHM 250
Query: 69 MNAGFPSQPLQPP 81
A QP PP
Sbjct: 251 SQAAM--QPTVPP 261
Score = 62 (26.9 bits), Expect = 1.9e-17, Sum P(3) = 1.9e-17
Identities = 43/196 (21%), Positives = 81/196 (41%)
Query: 476 ANKLEAKN---AFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKT-------A 525
A L+A N AF +LLE A + R + R+ A +++ ++ T
Sbjct: 827 ATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM--KRKESAFKSMLKQATPPIELDAV 884
Query: 526 FNEYLGQKKKQDA-EERRLKLKKAR--DDYKKMLEESVELTSSTRWSKAVTMFENDERFK 582
+ + + K+ A E+ L+ ++ R D+ +LE + S K + R +
Sbjct: 885 WEDIRDRFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKN-KKHSKKSKKHHRKR 943
Query: 583 ALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDR 642
+ R + D H + +Q+ +++ ER + R + +S K + + R D
Sbjct: 944 SRSRSGSESEDDDSHSKKKRQRSESRSASERSSSAESERSYKKSKKHKKKSKKRRHKSDS 1003
Query: 643 LEAD-ERCSRLDKMDR 657
E+D ER DK +R
Sbjct: 1004 PESDIER--EKDKKER 1017
Score = 57 (25.1 bits), Expect = 1.5e-50, Sum P(2) = 1.5e-50
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 13 AQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQ 47
A P PP V SMD G PP P+V A Q
Sbjct: 254 AMQPTVPPGVNSMDAQLGVTPPGTQTTHPVVCAAQ 288
Score = 50 (22.7 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 20/89 (22%), Positives = 39/89 (43%)
Query: 533 KKKQDAEERRLKLKKARDD---YKKMLEESVELTSSTRWSKAVT--MFENDERFKALERE 587
KK R ++ DD KK + S ++S R S A + ++ ++ K ++
Sbjct: 937 KKHHRKRSRSRSGSESEDDDSHSKKKRQRSESRSASERSSSAESERSYKKSKKHKKKSKK 996
Query: 588 RDRK-DMFDDHLDELKQKERAKAQEERKR 615
R K D + ++ K K+ + + E+ R
Sbjct: 997 RRHKSDSPESDIEREKDKKERERESEKDR 1025
>POMBASE|SPAC4D7.13 [details] [associations]
symbol:usp104 "U1 snRNP-associated protein Usp104"
species:4896 "Schizosaccharomyces pombe" [GO:0000243 "commitment
complex" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IPI] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 PomBase:SPAC4D7.13 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0000243 Gene3D:1.10.10.440 InterPro:IPR002713
Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698 GO:GO:0005685
GO:GO:0000395 KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0
eggNOG:COG5104 PIR:T38804 RefSeq:NP_594966.1
ProteinModelPortal:O14176 STRING:O14176 EnsemblFungi:SPAC4D7.13.1
GeneID:2543409 KEGG:spo:SPAC4D7.13 OMA:FRELEVW OrthoDB:EOG41VPBS
NextBio:20804424 Uniprot:O14176
Length = 695
Score = 356 (130.4 bits), Expect = 5.2e-48, Sum P(2) = 5.2e-48
Identities = 91/387 (23%), Positives = 180/387 (46%)
Query: 406 VSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEE 465
+SS I V + + +++A A D+ +++ + K + + D ++
Sbjct: 120 LSSKIKSNDNKPAVQSIQRHGPDVAAPSSQPAKDQ-SQQISQGSHKRTINFVQQKDKRQK 178
Query: 466 KTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTA 525
++ + +H Y A+ AF L+S NV WTW+Q +R + + + Y ++ RK A
Sbjct: 179 RSNDYQHENYDTYEAAERAFFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCA 238
Query: 526 FNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALE 585
F+ Y+ ++ + ++ K R ++ +ML+ S ++ S T W F + F A
Sbjct: 239 FDAYILNYLTDQSDAEKNRVTKIRKEFIEMLKSSDKIHSYTLWRTVKNEFSSHPAFNATS 298
Query: 586 RERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEA 645
E +++ +F ++ +L + E+ ++ RK + ++ L + +F + T+W Q + +
Sbjct: 299 SETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRNMNF-EPYTRWSVAQAKFDQ 357
Query: 646 DERCSR------LDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRDEFRKLME 699
D R +R L K+D L F + ERKNRD FR L++
Sbjct: 358 DPRYTRNSNMKYLSKLDALVAFEDHVKHLEREYILDKQKQKKEKHRIERKNRDAFRALLQ 417
Query: 700 ADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTR 759
+T +T W++ +KD P Y+ + SGSTP DLF D + +L+ ++E +
Sbjct: 418 DLRVQKKITLRTKWKELYPIIKDDPRYLNLLGQ-SGSTPLDLFWDTIVDLENMYREKRNL 476
Query: 760 IKDAVKLRKITLSSTWTFEDFKASVLE 786
+ D +++ +I++ T + A + E
Sbjct: 477 VLDCLEVLQISVDDTSNIPEIIARLSE 503
Score = 223 (83.6 bits), Expect = 5.2e-48, Sum P(2) = 5.2e-48
Identities = 51/118 (43%), Positives = 67/118 (56%)
Query: 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYN 288
V +DW E + D R YY+N TR S W+KP ELM E+ + WKE+ + DG+KY+YN
Sbjct: 32 VASDWHEVKTEDSRVYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATADGKKYWYN 91
Query: 289 KVTKQSKWSLPDELKLAR----EQAEKA-SIKGTQSETSPNSQTSISFPSSVVKAPSS 341
T++S W +PDE K A EQ +KA S K ++ P Q SI V APSS
Sbjct: 92 VNTRESVWDIPDEYKAALVDEPEQQKKALSSKIKSNDNKPAVQ-SIQRHGPDVAAPSS 148
Score = 71 (30.1 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 40/161 (24%), Positives = 75/161 (46%)
Query: 477 NKLEAKN--AFKALLESANVGSDWT----WDQALRAIINDRRYGALRTLGERKTA----F 526
+++E KN AF+ALL+ V T W + I +D RY L LG+ + F
Sbjct: 402 HRIERKNRDAFRALLQDLRVQKKITLRTKWKELYPIIKDDPRY--LNLLGQSGSTPLDLF 459
Query: 527 NEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALER 586
+ + + E+R L L D ++L+ SV+ TS+ + + E+ K E
Sbjct: 460 WDTIVDLENMYREKRNLVL-----DCLEVLQISVDDTSNI--PEIIARLS--EKLKDREE 510
Query: 587 -ERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLES 626
E +D+ ++ ++ L+ K K EE++ + R+ +++
Sbjct: 511 SEAVTEDLIEEVVNRLRDKAIHKKAEEKRADERRIRRKIDN 551
Score = 65 (27.9 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 30/128 (23%), Positives = 65/128 (50%)
Query: 445 VTEETRKDAV---RGEKVSDALEEKTVEQEHFAYANKLE-AKNAFKALLESANVGSDWTW 500
VTE+ ++ V R + + EEK ++ K++ ++A K L + +D ++
Sbjct: 514 VTEDLIEEVVNRLRDKAIHKKAEEKRADERRIR--RKIDNLRSAIKYL--KPPISADASY 569
Query: 501 DQALRAIINDR-RYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEES 559
D+ +R +I+ + AL + R AF++Y+ + +++ E++ + ++ D K +ES
Sbjct: 570 DE-IRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGK--DES 626
Query: 560 VELTSSTR 567
L +S R
Sbjct: 627 Y-LANSAR 633
Score = 63 (27.2 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 20/93 (21%), Positives = 43/93 (46%)
Query: 533 KKKQD--AEERRLKLKKARDDYKKMLEE-SVELTSSTRWSKAVTMFENDERFKALERERD 589
KK ++ A+ERR++ K D+ + ++ +++ + + + F AL E
Sbjct: 533 KKAEEKRADERRIRRKI--DNLRSAIKYLKPPISADASYDEIRPLISILPEFAALHSEEH 590
Query: 590 RKDMFDDHLDELKQKERAKAQEERKRNIIEYRK 622
R FD ++ L++K + Q + +R + K
Sbjct: 591 RMAAFDKYIRRLREKRELEKQYQNRRGYYDVGK 623
Score = 37 (18.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 734 SGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLR 767
S + +DL E+VV L+ + K K A + R
Sbjct: 511 SEAVTEDLIEEVVNRLRDKAIHKKAEEKRADERR 544
>WB|WBGene00014218 [details] [associations]
symbol:ZK1098.1b species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0018991 "oviposition" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0040010
GO:GO:0002119 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:Z22176
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0
eggNOG:COG5104 OMA:WEKPLEL GeneTree:ENSGT00530000062987 PIR:F88557
PIR:S40923 RefSeq:NP_001255005.1 RefSeq:NP_001255006.1
ProteinModelPortal:P34600 SMR:P34600 PaxDb:P34600 PRIDE:P34600
EnsemblMetazoa:ZK1098.1a GeneID:176343 KEGG:cel:CELE_ZK1098.1
UCSC:ZK1098.1 CTD:176343 WormBase:ZK1098.1a WormBase:ZK1098.1b
HOGENOM:HOG000019151 InParanoid:P34600 NextBio:892164
Uniprot:P34600
Length = 724
Score = 375 (137.1 bits), Expect = 6.1e-47, Sum P(2) = 6.1e-47
Identities = 108/406 (26%), Positives = 198/406 (48%)
Query: 412 EAVTDNTVAEAKNNLSNMSASDLVGASD----KVPP-PVTEETRKDAVRGEKVSDALEEK 466
+A T +TVA A + SDL A +P P+ E +++ E V+D +E K
Sbjct: 169 KAATVDTVALAAAVQQKKAESDLDKAMKATLASMPNVPLPSEKKEE----ESVNDEVELK 224
Query: 467 TVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAF 526
+ E F + + + ++ WDQA++ I ND R+ L + E+K F
Sbjct: 225 KRQSERF--------RELLRDKYNDGKITTNCNWDQAVKWIQNDPRFRILNKVSEKKQLF 276
Query: 527 NEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALER 586
N + Q+ K++ +E+RL +KK+++D +K L+E ++ S ++ KA +F + + A+
Sbjct: 277 NAWKVQRGKEERDEKRLAIKKSKEDLEKFLQEHPKMKESLKYQKASDIFSKEPLWIAVND 336
Query: 587 ERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRL-EA 645
E DRK++F D +D + ++++ K +E+RKR+I + L+S + I T W + Q L E
Sbjct: 337 E-DRKEIFRDCIDFVARRDKEKKEEDRKRDIAAFSHVLQSMEQITYKTTWAQAQRILYEN 395
Query: 646 DERCSR-----LDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRDEFRKLMEA 700
+ R +DK D L +F + +RK R+E+R L+E+
Sbjct: 396 PQFAERKDLHFMDKEDALTVFEDHIKQAEKEHDEEKEQEEKRLRRQQRKVREEYRLLLES 455
Query: 701 DVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRI 760
G LT+ + W + + + GS+P DLF+ VE+L++Q+ ED+ I
Sbjct: 456 LHKRGELTSMSLWTSLFPIISTDTRFELMLFQP-GSSPLDLFKFFVEDLKEQYTEDRRLI 514
Query: 761 KDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL 806
K+ + + + +T + +F V+ + N+KL ++ L+
Sbjct: 515 KEILTEKGCQVIATTEYREFSDWVVSHEKGGKVDHGNMKLCYNSLI 560
Score = 193 (73.0 bits), Expect = 6.1e-47, Sum P(2) = 6.1e-47
Identities = 37/101 (36%), Positives = 60/101 (59%)
Query: 225 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADAST----DWKEFTSP 280
S+ V++DW HT+ G YY N+ T+ ++W KP L T +ER+ + WKEF S
Sbjct: 76 SSPSVESDWSVHTNEKGTPYYHNRVTKQTSWIKPDVLKTPLERSTSGQPQQGQWKEFMSD 135
Query: 281 DGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSET 321
DG+ YYYN +TK+++W PD ++ + + +K + K +T
Sbjct: 136 DGKPYYYNTLTKKTQWVKPDGEEITKGE-QKPAAKAATVDT 175
Score = 135 (52.6 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 45/163 (27%), Positives = 71/163 (43%)
Query: 464 EEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERK 523
E K ++E + K ++ F+ LL+ NV D W I D+ Y A+ ER+
Sbjct: 564 ESKAKDEEKESLRRKRRLESEFRNLLKEHNVDKDSEWTVIKPKIEKDKAYLAMENDDERE 623
Query: 524 TAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKA 583
TAFN Y A L+ KK + D KK + S + S + E +++ K
Sbjct: 624 TAFNHYKNGTSGTTAGSEILEKKKKKKDKKKKNKRSDNNSESEGEIR-----EKEKKKKK 678
Query: 584 LERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLES 626
+ DR D + K ++R+ ++ E R+ E RK ES
Sbjct: 679 KHSKEDRMDDEERGKKSKKSRKRSPSRSESPRHSSEKRKRRES 721
Score = 88 (36.0 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 44/214 (20%), Positives = 95/214 (44%)
Query: 455 RGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWT----WDQALRAIIND 510
+ EK D EEK E++ + + + ++ LLES + + T W I D
Sbjct: 422 QAEKEHD--EEKEQEEKRLRRQQR-KVREEYRLLLESLHKRGELTSMSLWTSLFPIISTD 478
Query: 511 RRYGAL--RTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRW 568
R+ + + F ++ K+Q E+RRL +K+ + E+ ++ ++T +
Sbjct: 479 TRFELMLFQPGSSPLDLFKFFVEDLKEQYTEDRRL-IKEI------LTEKGCQVIATTEY 531
Query: 569 SKAVTMFENDERFKALERERDRKDMFDDHLD--ELKQKERAKAQEERKRNI-IEYRKFLE 625
+ + E+ ++ + K ++ ++ E K K+ K RKR + E+R L+
Sbjct: 532 REFSDWVVSHEKGGKVDHG-NMKLCYNSLIEKAESKAKDEEKESLRRKRRLESEFRNLLK 590
Query: 626 SCDFIKANTQWRKVQDRLEADERCSRLDKMDRLE 659
+ K +++W ++ ++E D+ ++ D E
Sbjct: 591 EHNVDK-DSEWTVIKPKIEKDKAYLAMENDDERE 623
Score = 38 (18.4 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 292 KQSKWSLPDELKLAREQAEK 311
K+ + S+ DE++L + Q+E+
Sbjct: 211 KKEEESVNDEVELKKRQSER 230
>UNIPROTKB|F5H578 [details] [associations]
symbol:PRPF40A "Pre-mRNA-processing factor 40 homolog A"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC079344
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 EMBL:AC012443 HGNC:HGNC:16463 ChiTaRS:PRPF40A
IPI:IPI01018842 ProteinModelPortal:F5H578 SMR:F5H578 PRIDE:F5H578
Ensembl:ENST00000545856 UCSC:uc002tyj.2 ArrayExpress:F5H578
Bgee:F5H578 Uniprot:F5H578
Length = 448
Score = 365 (133.5 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 95/316 (30%), Positives = 147/316 (46%)
Query: 225 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRK 284
+A G ++ W EH S DGR YY+N T+ STW+KP +L T E+ + WKE+ S G+
Sbjct: 138 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKP 197
Query: 285 YYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSA-- 342
YYYN TK+S+W+ P EL+ ++G Q+ S + S +++KA S+
Sbjct: 198 YYYNSQTKESRWAKPKELE---------DLEGYQNTIVAGSLITKSNLHAMIKAEESSKQ 248
Query: 343 DIXXXXXXXXXXXXXXXXXXXXXXXTQPALXXXXXXXXXXXXXXXANADGFPK---TVDA 399
+ + A ANA+ TV
Sbjct: 249 EECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSG 308
Query: 400 IAPMI---DVSSSIGEAV-TDNTVAEAKNNLSNMSASDLV-GASDKVPPPVTEETRK-DA 453
P++ +V+S + V +NTV + + ++++ + S +V EET K +
Sbjct: 309 TVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQET 368
Query: 454 VRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRY 513
V EE ++ + + K EAK AFK LL+ V S+ +W+QA++ IIND RY
Sbjct: 369 VADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRY 428
Query: 514 GALRTLGERKTAFNEY 529
AL L E+K AFN Y
Sbjct: 429 SALAKLSEKKQAFNAY 444
>UNIPROTKB|F1NT10 [details] [associations]
symbol:TCERG1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IEA] [GO:0001106 "RNA
polymerase II transcription corepressor activity" evidence=IEA]
[GO:0070064 "proline-rich region binding" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0001106 Gene3D:2.20.70.10 SUPFAM:SSF51045
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 GeneTree:ENSGT00530000062987 OMA:MEEMNED
EMBL:AADN02028198 EMBL:AADN02028199 IPI:IPI00584064
Ensembl:ENSGALT00000012177 Uniprot:F1NT10
Length = 1019
Score = 253 (94.1 bits), Expect = 6.2e-29, Sum P(4) = 6.2e-29
Identities = 58/224 (25%), Positives = 122/224 (54%)
Query: 437 ASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAK-NAFKALLESANVG 495
A++ P + + + D + +A E ++ LEA+ FK +L V
Sbjct: 538 ANEDEPIKIKKRKKDDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVS 597
Query: 496 SDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKM 555
+ TW++ L I+ D RY L ERK F++Y+ + +++ +E++ K+ +A++D+KKM
Sbjct: 598 AFSTWEKELHKIVFDPRYLLLNPK-ERKQVFDQYVKTRAEEERKEKKNKIMQAKEDFKKM 656
Query: 556 LEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKR 615
+EES ++ T +S+ D RFKA+E+ +DR+ +F++ + ++KE+ ++ ++
Sbjct: 657 MEES-KINPRTTFSEFAAKHAKDSRFKAIEKMKDREALFNEFITAARKKEKEDSKTRGEK 715
Query: 616 NIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLE 659
+++ + L + + + ++W KV+D++E D R +D + E
Sbjct: 716 IKMDFFELLAN-HHLDSQSRWSKVKDKVETDPRYKAVDSSSQRE 758
Score = 197 (74.4 bits), Expect = 9.5e-23, Sum P(4) = 9.5e-23
Identities = 48/188 (25%), Positives = 96/188 (51%)
Query: 457 EKVSDALEEKTVEQEHFAYANKL-EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGA 515
++V D + E+E NK+ +AK FK ++E + + T+ + D R+ A
Sbjct: 624 KQVFDQYVKTRAEEERKEKKNKIMQAKEDFKKMMEESKINPRTTFSEFAAKHAKDSRFKA 683
Query: 516 LRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMF 575
+ + +R+ FNE++ +K++ E+ + + +K + D+ ++L L S +RWSK
Sbjct: 684 IEKMKDREALFNEFITAARKKEKEDSKTRGEKIKMDFFELLANH-HLDSQSRWSKVKDKV 742
Query: 576 ENDERFKALERERDRKDMFDDHLDEL-KQKERAKAQEERKRNIIEYRKFLESCDFIKANT 634
E D R+KA++ R+D+F +++++ K + K +E ++ IE + KA +
Sbjct: 743 ETDPRYKAVDSSSQREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARS 802
Query: 635 QWRKVQDR 642
+ K DR
Sbjct: 803 EQTKEIDR 810
Score = 133 (51.9 bits), Expect = 8.2e-16, Sum P(4) = 8.2e-16
Identities = 55/208 (26%), Positives = 100/208 (48%)
Query: 455 RGEKVSDALEEKTVEQEHFAYANKLE-AKNAFKALLESANVGSDWTWDQALRAIINDRRY 513
R +V A E+T E + +K E A FKALL SD +W R + D R+
Sbjct: 793 REREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRW 852
Query: 514 --GALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKA 571
G+L E++ FNE++ KK R+ ++++L+E+ +T ++ W +
Sbjct: 853 ESGSLLEREEKEKLFNEHI-----------EALTKKKREHFRQLLDETSAITLTSTWKEV 901
Query: 572 VTMFENDER---FKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFL--ES 626
+ + D R F + +R++ R+ F++++ + + AKA R +++ KF+ S
Sbjct: 902 KKIIKEDPRCIKFSSSDRKKQRE--FEEYIRD--KYITAKADF---RTLLKETKFITYRS 954
Query: 627 CDFIKANTQWRK-VQDRLEADERCSRLD 653
I+ + Q K V+ L+ D+R LD
Sbjct: 955 KKLIQESDQHLKDVEKILQNDKRYLVLD 982
Score = 127 (49.8 bits), Expect = 3.6e-15, Sum P(4) = 3.6e-15
Identities = 36/144 (25%), Positives = 70/144 (48%)
Query: 518 TLGERKTAFNEYLGQKKKQ-DAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFE 576
+L ER+ + ++ K+ D E + K ++A ++K +L + V +S WS
Sbjct: 789 SLREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVR-SSDVSWSDTRRTLR 847
Query: 577 NDERFKA---LERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKAN 633
D R+++ LERE K +F++H++ L +K+R +R+ L+ I
Sbjct: 848 KDHRWESGSLLEREEKEK-LFNEHIEALTKKKRE-----------HFRQLLDETSAITLT 895
Query: 634 TQWRKVQDRLEADERCSRLDKMDR 657
+ W++V+ ++ D RC + DR
Sbjct: 896 STWKEVKKIIKEDPRCIKFSSSDR 919
Score = 126 (49.4 bits), Expect = 4.6e-15, Sum P(4) = 4.6e-15
Identities = 56/225 (24%), Positives = 98/225 (43%)
Query: 538 AEERRLKLKKAR-DDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDD 596
A ER + +AR +K ML E ST W K + D R+ L ++RK +FD
Sbjct: 572 ARERAIVPLEARMKQFKDMLLERGVSAFST-WEKELHKIVFDPRYLLLN-PKERKQVFDQ 629
Query: 597 HLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKM- 655
++ ++ER + + + + +++K +E I T + + + D R ++KM
Sbjct: 630 YVKTRAEEERKEKKNKIMQAKEDFKKMMEESK-INPRTTFSEFAAKHAKDSRFKAIEKMK 688
Query: 656 DRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTE-RKNRDEFRKLMEADVALGTLTAKTNWR 714
DR +F SKT K + +F +L+ A L +++ W
Sbjct: 689 DREALFNEFITAARKKEKED--------SKTRGEKIKMDFFELL----ANHHLDSQSRWS 736
Query: 715 DYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTR 759
KV+ P Y AV S+ S +DLF+ +E++ K +K +
Sbjct: 737 KVKDKVETDPRYKAVDSS---SQREDLFKQYIEKIAKNLDSEKEK 778
Score = 112 (44.5 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 264 TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSE 320
T+ A A ++W E+ + DG+ YYYN T +S W P ELK +E+ E+ IK T E
Sbjct: 349 TLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK-EKEKLEE-KIKETIKE 403
Score = 110 (43.8 bits), Expect = 2.2e-26, Sum P(3) = 2.2e-26
Identities = 23/96 (23%), Positives = 44/96 (45%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPS 333
W E +PDG+ Y+YN T++S W+ PD +K+ +Q+E + Q++ ++ T+ S +
Sbjct: 134 WVENKTPDGKVYFYNARTRESAWTKPDGVKVI-QQSELTPMLAAQAQVGASTPTTSS--A 190
Query: 334 SVVKAPSSADIXXXXXXXXXXXXXXXXXXXXXXXTQ 369
+ +PS++ TQ
Sbjct: 191 AAAASPSTSSSTQSSTTSTTTTATSVSQTNSTPTTQ 226
Score = 106 (42.4 bits), Expect = 6.2e-29, Sum P(4) = 6.2e-29
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261
++W E+ +ADG+ YY+N RT STW+KP EL
Sbjct: 357 SEWTEYKTADGKTYYYNNRTLESTWEKPQEL 387
Score = 96 (38.9 bits), Expect = 6.0e-25, Sum P(3) = 6.0e-25
Identities = 33/121 (27%), Positives = 53/121 (43%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFEL-------MTTIERADASTDWKEFTSPDGRKY 285
W E+ + DG+ Y++N RTR S W KP + +T + A A T+
Sbjct: 134 WVENKTPDGKVYFYNARTRESAWTKPDGVKVIQQSELTPMLAAQAQVGASTPTTSSAAAA 193
Query: 286 YYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPS-SV-VKAPSSAD 343
+ ++ S A ++ S TQ +T P+S S++ PS SV APS+
Sbjct: 194 ASPSTSSSTQSSTTSTTTTATSVSQTNSTPTTQDQT-PSSGVSVATPSVSVSTSAPSATP 252
Query: 344 I 344
+
Sbjct: 253 V 253
Score = 77 (32.2 bits), Expect = 8.3e-08, Sum P(3) = 8.3e-08
Identities = 69/336 (20%), Positives = 137/336 (40%)
Query: 444 PVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDW--TWD 501
P+ ET ++ + E + + ++E+ E+E + +A K + + G+ W W
Sbjct: 408 PLPMETEEEEPKEEPIKELIKEEPKEEE---MTEEEKAAQKAKPVATTPIPGTPWCVVWT 464
Query: 502 QALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKM-LEESV 560
R + ++ +R ++ +G + D + KK ++ KK+ +++ +
Sbjct: 465 GDERVFFYNPT--TRLSMWDRP---DDLIG-RADVDKIIQEPPHKKGMEEGKKLNIKKCI 518
Query: 561 ELTS----STRWSKAVTMFEN-DERFKALERERD-RKDMFDDHLDELKQKERAKAQEERK 614
+L + R T N DE K +R++D KD+ D E + KA ER
Sbjct: 519 QLWNFFKKEVREEHETTEEANEDEPIKIKKRKKDDNKDI--DSEKEAAMEAEIKAARERA 576
Query: 615 RNIIEYR--KFLESC--DFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFXXXXXXXXX 670
+E R +F + + A + W K ++ D R L+ +R ++F
Sbjct: 577 IVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAE 636
Query: 671 XXXXXXXXXXXXXSKTERKNR-----DEFRKLMEADVALGTLTAKTNWRDYCIK-VKDSP 724
+ E+KN+ ++F+K+ME + +T + ++ K KDS
Sbjct: 637 E------------ERKEKKNKIMQAKEDFKKMMEES----KINPRTTFSEFAAKHAKDSR 680
Query: 725 PYMAVASNTSGSTPKDLFEDVVEELQKQFQED-KTR 759
+ A+ LF + + +K+ +ED KTR
Sbjct: 681 -FKAIEKMKDREA---LFNEFITAARKKEKEDSKTR 712
Score = 73 (30.8 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 26/110 (23%), Positives = 49/110 (44%)
Query: 482 KNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQ-KKKQDAEE 540
K F LL + ++ S W + + D RY A+ + +R+ F +Y+ + K D+E+
Sbjct: 717 KMDFFELLANHHLDSQSRWSKVKDKVETDPRYKAVDSSSQREDLFKQYIEKIAKNLDSEK 776
Query: 541 RRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDR 590
+K LE + +S R + E+ K ++RER++
Sbjct: 777 ------------EKELERQARIEASLREREREVQKARSEQTKEIDREREQ 814
Score = 72 (30.4 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERAD 269
T W + D R +++N TR+S WD+P +L I RAD
Sbjct: 457 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL---IGRAD 492
Score = 71 (30.1 bits), Expect = 6.2e-29, Sum P(4) = 6.2e-29
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 272 TDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEK 311
T W + D R ++YN T+ S W PD+L + R +K
Sbjct: 457 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL-IGRADVDK 495
Score = 71 (30.1 bits), Expect = 1.8e-09, Sum P(4) = 1.8e-09
Identities = 53/296 (17%), Positives = 116/296 (39%)
Query: 500 WDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEE-RRLKLKKARDDYKKMLEE 558
+DQ ++ + R + + K F + + + K K A+D K +E+
Sbjct: 627 FDQYVKTRAEEERKEKKNKIMQAKEDFKKMMEESKINPRTTFSEFAAKHAKDSRFKAIEK 686
Query: 559 SVELTSSTRWSKAVTMFENDERFKALER-ERDRKDMFD----DHLDELKQ--KERAKAQE 611
+ +++ +T E+ + R E+ + D F+ HLD + K + K +
Sbjct: 687 MKD--REALFNEFITAARKKEKEDSKTRGEKIKMDFFELLANHHLDSQSRWSKVKDKVET 744
Query: 612 ERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFXXXXXXXXXX 671
+ + ++ E D K + K+ L++++ L++ R+E
Sbjct: 745 DPRYKAVDSSSQRE--DLFKQYIE--KIAKNLDSEKE-KELERQARIE--ASLREREREV 797
Query: 672 XXXXXXXXXXXXSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVAS 731
+ E+ R+E + +A ++ ++ +W D ++ + + S
Sbjct: 798 QKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWES-GS 856
Query: 732 NTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLED 787
+ LF + +E L K+ +E ++ D ITL+STW ++ K + ED
Sbjct: 857 LLEREEKEKLFNEHIEALTKKKREHFRQLLDETSA--ITLTSTW--KEVKKIIKED 908
Score = 69 (29.3 bits), Expect = 6.2e-29, Sum P(4) = 6.2e-29
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 16 PHQPPMVGSMDPPRG--FGPPIPSQYRPLVPAPQP 48
P PP +GSM PP G F P +P P PA P
Sbjct: 95 PFMPPPMGSMPPPPGMMFPPGMPPVTAPGTPAMPP 129
Score = 55 (24.4 bits), Expect = 1.7e-27, Sum P(4) = 1.7e-27
Identities = 21/69 (30%), Positives = 25/69 (36%)
Query: 16 PHQPPMVGSMDPPRGFGPPIP-SQYRPLVPAPQPQHYVPMASQHFQP-GGQGGLIMNAGF 73
P PP PP PP P R P P+P P + P GG+ G
Sbjct: 29 PAPPPNAVMRGPPPLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIPPPMG- 87
Query: 74 PSQPLQPPF 82
P +PPF
Sbjct: 88 PPHLQRPPF 96
Score = 46 (21.3 bits), Expect = 1.4e-26, Sum P(4) = 1.4e-26
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 6 NNAPYSGAQVPHQPPMVGSMDP---PRGFGP-PIPSQYRPLVP--APQPQHYVP 53
+ P SG V V + P P P P+P P VP PQP +P
Sbjct: 227 DQTPSSGVSVATPSVSVSTSAPSATPVQTVPQPVPQTLPPAVPHAVPQPTAAIP 280
>MGI|MGI:1926421 [details] [associations]
symbol:Tcerg1 "transcription elongation regulator 1 (CA150)"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001103 "RNA polymerase II repressing transcription factor
binding" evidence=ISO] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0016363 "nuclear
matrix" evidence=ISS] [GO:0070064 "proline-rich region binding"
evidence=IDA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 MGI:MGI:1926421 GO:GO:0005634
GO:GO:0003700 GO:GO:0006351 GO:GO:0070064 GO:GO:0001106
Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
PDB:2JUP PDB:2RLY PDB:2RM0 PDBsum:2JUP PDBsum:2RLY PDBsum:2RM0
eggNOG:COG5104 GeneTree:ENSGT00530000062987 CTD:10915
HOGENOM:HOG000008544 HOVERGEN:HBG062908 KO:K12824 OMA:MEEMNED
OrthoDB:EOG40CHGM EMBL:BC039185 EMBL:BC040284 EMBL:AB023485
EMBL:U40749 EMBL:AK082750 IPI:IPI00229485 IPI:IPI00471277
IPI:IPI00471279 PIR:S64716 RefSeq:NP_001034563.1 UniGene:Mm.270511
PDB:1E0L PDB:2YSI PDBsum:1E0L PDBsum:2YSI ProteinModelPortal:Q8CGF7
SMR:Q8CGF7 STRING:Q8CGF7 PhosphoSite:Q8CGF7 PaxDb:Q8CGF7
PRIDE:Q8CGF7 Ensembl:ENSMUST00000025375 Ensembl:ENSMUST00000173642
GeneID:56070 KEGG:mmu:56070 UCSC:uc008etw.1 InParanoid:Q8CGF7
EvolutionaryTrace:Q8CGF7 NextBio:311856 Bgee:Q8CGF7
CleanEx:MM_TCERG1 Genevestigator:Q8CGF7
GermOnline:ENSMUSG00000024498 Uniprot:Q8CGF7
Length = 1100
Score = 238 (88.8 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 61/224 (27%), Positives = 122/224 (54%)
Query: 444 PVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANK----LEAK-NAFKALLESANVGSDW 498
P+ + RK K D+ +E +E E A + LEA+ FK +L V +
Sbjct: 624 PIKAKKRKRD--DNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFS 681
Query: 499 TWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEE 558
TW++ L I+ D RY L ERK F++Y+ + +++ E++ K+ +A++D+KKM+EE
Sbjct: 682 TWEKELHKIVFDPRYLLLNPK-ERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 740
Query: 559 SVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNII 618
+ + +S+ D RFKA+E+ +DR+ +F++ + ++KE+ ++ ++
Sbjct: 741 A-KFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKS 799
Query: 619 EYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMD-RLEIF 661
++ + L + + + ++W KV+D++E+D R +D R ++F
Sbjct: 800 DFFELLSN-HHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 842
Score = 198 (74.8 bits), Expect = 2.6e-24, Sum P(4) = 2.6e-24
Identities = 49/188 (26%), Positives = 96/188 (51%)
Query: 457 EKVSDALEEKTVEQEHFAYANKL-EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGA 515
++V D + E+E NK+ +AK FK ++E A T+ + D R+ A
Sbjct: 705 KQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKA 764
Query: 516 LRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMF 575
+ + +R+ FNE++ +K++ E+ + + +K + D+ ++L L S +RWSK
Sbjct: 765 IEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKV 823
Query: 576 ENDERFKALERERDRKDMFDDHLDEL-KQKERAKAQEERKRNIIEYRKFLESCDFIKANT 634
E+D R+KA++ R+D+F +++++ K + K +E ++ IE + KA +
Sbjct: 824 ESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARS 883
Query: 635 QWRKVQDR 642
+ K DR
Sbjct: 884 EQTKEIDR 891
Score = 135 (52.6 bits), Expect = 1.8e-17, Sum P(4) = 1.8e-17
Identities = 61/256 (23%), Positives = 119/256 (46%)
Query: 407 SSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRK-DAVRGEKVSDALEE 465
SSS+ E + + + NL + +L + ++ + E R+ R E+ + E
Sbjct: 834 SSSMREDLFKQYIEKIAKNLDSEKEKELERQA-RIEASLREREREVQKARSEQTKEIDRE 892
Query: 466 KTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRY--GALRTLGERK 523
+ ++H + EA FKALL SD +W R + D R+ G+L E++
Sbjct: 893 R---EQH----KREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKE 945
Query: 524 TAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDER--- 580
FNE++ KK R+ ++++L+E+ +T ++ W + + + D R
Sbjct: 946 KLFNEHI-----------EALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIK 994
Query: 581 FKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFL--ESCDFIKANTQWRK 638
F + +R++ R+ F++++ + + AKA R +++ KF+ S I+ + Q K
Sbjct: 995 FSSSDRKKQRE--FEEYIRD--KYITAKADF---RTLLKETKFITYRSKKLIQESDQHLK 1047
Query: 639 -VQDRLEADERCSRLD 653
V+ L+ D+R LD
Sbjct: 1048 DVEKILQNDKRYLVLD 1063
Score = 129 (50.5 bits), Expect = 7.8e-17, Sum P(4) = 7.8e-17
Identities = 54/231 (23%), Positives = 105/231 (45%)
Query: 447 EETRKDAVRGEKV-SDALE----EKTVEQEHFAYA-NKLEAKNAFKALLESANVGSDWTW 500
+E RGEK+ SD E Q ++ +K+E+ +KA+ +S+++ D +
Sbjct: 785 KEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAV-DSSSMRED-LF 842
Query: 501 DQALRAIIND---------RRYGALR-TLGERKTAFNEYLGQKKKQ-DAEERRLKLKKAR 549
Q + I + R + +L ER+ + ++ K+ D E + K ++A
Sbjct: 843 KQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAI 902
Query: 550 DDYKKMLEESVELTSSTRWSKAVTMFENDERFKA---LERERDRKDMFDDHLDELKQKER 606
++K +L + V +S WS D R+++ LERE K +F++H++ L +K+R
Sbjct: 903 QNFKALLSDMVR-SSDVSWSDTRRTLRKDHRWESGSLLEREEKEK-LFNEHIEALTKKKR 960
Query: 607 AKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDR 657
+R+ L+ I + W++V+ ++ D RC + DR
Sbjct: 961 E-----------HFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDR 1000
Score = 126 (49.4 bits), Expect = 1.6e-16, Sum P(4) = 1.6e-16
Identities = 55/225 (24%), Positives = 97/225 (43%)
Query: 538 AEERRLKLKKAR-DDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDD 596
A ER + +AR +K ML E ST W K + D R+ L ++RK +FD
Sbjct: 653 ARERAIVPLEARMKQFKDMLLERGVSAFST-WEKELHKIVFDPRYLLLN-PKERKQVFDQ 710
Query: 597 HLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKM- 655
++ ++ER + + + + +++K +E F T + + + D R ++KM
Sbjct: 711 YVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRAT-FSEFAAKHAKDSRFKAIEKMK 769
Query: 656 DRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTE-RKNRDEFRKLMEADVALGTLTAKTNWR 714
DR +F SKT K + +F +L+ L +++ W
Sbjct: 770 DREALFNEFVAAARKKEKED--------SKTRGEKIKSDFFELLSNH----HLDSQSRWS 817
Query: 715 DYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTR 759
KV+ P Y AV S+ S +DLF+ +E++ K +K +
Sbjct: 818 KVKDKVESDPRYKAVDSS---SMREDLFKQYIEKIAKNLDSEKEK 859
Score = 112 (44.5 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
Identities = 38/182 (20%), Positives = 66/182 (36%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPS 333
W E +PDG+ YYYN T++S W+ PD +K+ +Q+E + Q++ +Q +
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVI-QQSELTPMLAAQAQVQAQAQAQAQAQA 195
Query: 334 SVVKAPSSADIXXXXXXXXXXXXXXXXXXXXXXXTQPALXXXXXXXXXXXXXXXANADGF 393
+A + A Q A A
Sbjct: 196 QA-QAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQVQ 254
Query: 394 PKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEE-TRKD 452
+ V A P +SS AV+ +T ++ + + + + V P T++ T
Sbjct: 255 AQAVGAPTP---TTSSPAPAVSTSTPTSTPSS-TTATTTTATSVAQTVSTPTTQDQTPSS 310
Query: 453 AV 454
AV
Sbjct: 311 AV 312
Score = 111 (44.1 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 264 TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKAS--IKGTQSET 321
T+ A A ++W E+ + DG+ YYYN T +S W P ELK + EK IK E
Sbjct: 427 TLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLDEKIKEPIKEASEEP 486
Query: 322 SP 323
P
Sbjct: 487 LP 488
Score = 106 (42.4 bits), Expect = 8.9e-24, Sum P(3) = 8.9e-24
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261
++W E+ +ADG+ YY+N RT STW+KP EL
Sbjct: 435 SEWTEYKTADGKTYYYNNRTLESTWEKPQEL 465
Score = 86 (35.3 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKP 258
W E+ + DG+ YY+N RTR S W KP
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKP 162
Score = 79 (32.9 bits), Expect = 5.4e-21, Sum P(3) = 5.4e-21
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKV 290
T W + D R +++N TR+S WD+P +L I RAD K P +K +
Sbjct: 534 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL---IGRADVD---KIIQEPPHKKGLEDM- 586
Query: 291 TKQSKWSLPDELKLAREQAEKASIKGTQ 318
K+ + P L + + Q ++IK Q
Sbjct: 587 -KKLRHPAPTMLSIQKWQFSMSAIKEEQ 613
Score = 79 (32.9 bits), Expect = 1.0e-11, Sum P(4) = 1.0e-11
Identities = 54/236 (22%), Positives = 95/236 (40%)
Query: 546 KKARDDYKKMLEESVELTSSTRWSKAVTMFEN----------DERFKALERERD-RKDMF 594
KK +D KK+ + + S +W +++ + DE KA +R+RD KD+
Sbjct: 580 KKGLEDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRDDNKDI- 638
Query: 595 DDHLDELKQKERAKAQEERKRNIIEYR--KFLESC--DFIKANTQWRKVQDRLEADERCS 650
D E + KA ER +E R +F + + A + W K ++ D R
Sbjct: 639 -DSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYL 697
Query: 651 RLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNR-----DEFRKLMEADVALG 705
L+ +R ++F + E+KN+ ++F+K+ME
Sbjct: 698 LLNPKERKQVFDQYVKTRAEE------------ERREKKNKIMQAKEDFKKMMEE----A 741
Query: 706 TLTAKTNWRDYCIK-VKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQED-KTR 759
+ + ++ K KDS + A+ LF + V +K+ +ED KTR
Sbjct: 742 KFNPRATFSEFAAKHAKDSR-FKAIEKMKDREA---LFNEFVAAARKKEKEDSKTR 793
Score = 75 (31.5 bits), Expect = 2.5e-11, Sum P(4) = 2.5e-11
Identities = 54/296 (18%), Positives = 116/296 (39%)
Query: 500 WDQALRAIINDRRYGALRTLGERKTAFNEYLGQKK-KQDAEERRLKLKKARDDYKKMLEE 558
+DQ ++ + R + + K F + + + K A K A+D K +E+
Sbjct: 708 FDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEK 767
Query: 559 SVELTSSTRWSKAVTMFENDERFKALER-ERDRKDMFD----DHLDELKQ--KERAKAQE 611
+ +++ V E+ + R E+ + D F+ HLD + K + K +
Sbjct: 768 MKD--REALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVES 825
Query: 612 ERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFXXXXXXXXXX 671
+ + ++ E D K + K+ L++++ L++ R+E
Sbjct: 826 DPRYKAVDSSSMRE--DLFKQYIE--KIAKNLDSEKE-KELERQARIE--ASLREREREV 878
Query: 672 XXXXXXXXXXXXSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVAS 731
+ E+ R+E + +A ++ ++ +W D ++ + + S
Sbjct: 879 QKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWES-GS 937
Query: 732 NTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLED 787
+ LF + +E L K+ +E ++ D ITL+STW ++ K + ED
Sbjct: 938 LLEREEKEKLFNEHIEALTKKKREHFRQLLDETSA--ITLTSTW--KEVKKIIKED 989
Score = 65 (27.9 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 16 PHQPPMVGSMDPPRG--FGPPIPSQYRPLVPAPQP 48
P PP +G+M PP G F P +P P PA P
Sbjct: 98 PFMPPPMGAMPPPPGMMFPPGMPPGTAPGAPALPP 132
Score = 55 (24.4 bits), Expect = 1.1e-27, Sum P(4) = 1.1e-27
Identities = 21/69 (30%), Positives = 25/69 (36%)
Query: 16 PHQPPMVGSMDPPRGFGPPIP-SQYRPLVPAPQPQHYVPMASQHFQP-GGQGGLIMNAGF 73
P PP PP PP P R P P+P P + P GG+ G
Sbjct: 32 PAPPPNAVMRGPPPLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIPPPMG- 90
Query: 74 PSQPLQPPF 82
P +PPF
Sbjct: 91 PPHLQRPPF 99
Score = 51 (23.0 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 305 AREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPS 340
A A+ S TQ +T P+S S++ P+ V AP+
Sbjct: 291 ATSVAQTVSTPTTQDQT-PSSAVSVATPTVSVSAPA 325
Score = 37 (18.1 bits), Expect = 1.4e-07, Sum P(4) = 1.4e-07
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 584 LERERDRKDMFDDHLDELKQ--KERAKAQEER 613
L E + +D ++ + E+K+ KE +EE+
Sbjct: 487 LPMETEEEDPKEEPVKEIKEEPKEEEMTEEEK 518
>UNIPROTKB|O14776 [details] [associations]
symbol:TCERG1 "Transcription elongation regulator 1"
species:9606 "Homo sapiens" [GO:0070064 "proline-rich region
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001103 "RNA polymerase II repressing transcription factor
binding" evidence=IPI] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=IDA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 GO:GO:0005634 GO:GO:0003713
GO:GO:0001106 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
eggNOG:COG5104 EMBL:AF017789 EMBL:AB209910 EMBL:BC111727
IPI:IPI00247871 IPI:IPI00744062 PIR:T08599 RefSeq:NP_001035095.1
RefSeq:NP_006697.2 UniGene:Hs.735127 PDB:2DK7 PDB:2DOD PDB:2DOE
PDB:2DOF PDB:2E71 PDB:2KIQ PDB:2KIS PDB:2NNT PDB:3HFH PDBsum:2DK7
PDBsum:2DOD PDBsum:2DOE PDBsum:2DOF PDBsum:2E71 PDBsum:2KIQ
PDBsum:2KIS PDBsum:2NNT PDBsum:3HFH ProteinModelPortal:O14776
SMR:O14776 IntAct:O14776 MINT:MINT-158391 STRING:O14776
PhosphoSite:O14776 PaxDb:O14776 PRIDE:O14776
Ensembl:ENST00000296702 Ensembl:ENST00000394421 GeneID:10915
KEGG:hsa:10915 UCSC:uc003lob.3 UCSC:uc003loc.3 CTD:10915
GeneCards:GC05P145807 HGNC:HGNC:15630 MIM:605409 neXtProt:NX_O14776
PharmGKB:PA38007 HOGENOM:HOG000008544 HOVERGEN:HBG062908
InParanoid:O14776 KO:K12824 OMA:MEEMNED OrthoDB:EOG40CHGM
PhylomeDB:O14776 EvolutionaryTrace:O14776 GenomeRNAi:10915
NextBio:41457 ArrayExpress:O14776 Bgee:O14776 CleanEx:HS_TCERG1
Genevestigator:O14776 GermOnline:ENSG00000113649 Uniprot:O14776
Length = 1098
Score = 239 (89.2 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 62/224 (27%), Positives = 122/224 (54%)
Query: 444 PVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANK----LEAK-NAFKALLESANVGSDW 498
PV + RK K D+ +E +E E A + LEA+ FK +L V +
Sbjct: 622 PVKAKKRKRD--DNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFS 679
Query: 499 TWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEE 558
TW++ L I+ D RY L ERK F++Y+ + +++ E++ K+ +A++D+KKM+EE
Sbjct: 680 TWEKELHKIVFDPRYLLLNPK-ERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 738
Query: 559 SVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNII 618
+ + +S+ D RFKA+E+ +DR+ +F++ + ++KE+ ++ ++
Sbjct: 739 A-KFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKS 797
Query: 619 EYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMD-RLEIF 661
++ + L + + + ++W KV+D++E+D R +D R ++F
Sbjct: 798 DFFELLSN-HHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 840
Score = 198 (74.8 bits), Expect = 5.2e-24, Sum P(4) = 5.2e-24
Identities = 49/188 (26%), Positives = 96/188 (51%)
Query: 457 EKVSDALEEKTVEQEHFAYANKL-EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGA 515
++V D + E+E NK+ +AK FK ++E A T+ + D R+ A
Sbjct: 703 KQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKA 762
Query: 516 LRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMF 575
+ + +R+ FNE++ +K++ E+ + + +K + D+ ++L L S +RWSK
Sbjct: 763 IEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKV 821
Query: 576 ENDERFKALERERDRKDMFDDHLDEL-KQKERAKAQEERKRNIIEYRKFLESCDFIKANT 634
E+D R+KA++ R+D+F +++++ K + K +E ++ IE + KA +
Sbjct: 822 ESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARS 881
Query: 635 QWRKVQDR 642
+ K DR
Sbjct: 882 EQTKEIDR 889
Score = 135 (52.6 bits), Expect = 3.5e-17, Sum P(4) = 3.5e-17
Identities = 61/256 (23%), Positives = 119/256 (46%)
Query: 407 SSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRK-DAVRGEKVSDALEE 465
SSS+ E + + + NL + +L + ++ + E R+ R E+ + E
Sbjct: 832 SSSMREDLFKQYIEKIAKNLDSEKEKELERQA-RIEASLREREREVQKARSEQTKEIDRE 890
Query: 466 KTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRY--GALRTLGERK 523
+ ++H + EA FKALL SD +W R + D R+ G+L E++
Sbjct: 891 R---EQH----KREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKE 943
Query: 524 TAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDER--- 580
FNE++ KK R+ ++++L+E+ +T ++ W + + + D R
Sbjct: 944 KLFNEHI-----------EALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIK 992
Query: 581 FKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFL--ESCDFIKANTQWRK 638
F + +R++ R+ F++++ + + AKA R +++ KF+ S I+ + Q K
Sbjct: 993 FSSSDRKKQRE--FEEYIRD--KYITAKADF---RTLLKETKFITYRSKKLIQESDQHLK 1045
Query: 639 -VQDRLEADERCSRLD 653
V+ L+ D+R LD
Sbjct: 1046 DVEKILQNDKRYLVLD 1061
Score = 129 (50.5 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 54/231 (23%), Positives = 105/231 (45%)
Query: 447 EETRKDAVRGEKV-SDALE----EKTVEQEHFAYA-NKLEAKNAFKALLESANVGSDWTW 500
+E RGEK+ SD E Q ++ +K+E+ +KA+ +S+++ D +
Sbjct: 783 KEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAV-DSSSMRED-LF 840
Query: 501 DQALRAIIND---------RRYGALR-TLGERKTAFNEYLGQKKKQ-DAEERRLKLKKAR 549
Q + I + R + +L ER+ + ++ K+ D E + K ++A
Sbjct: 841 KQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAI 900
Query: 550 DDYKKMLEESVELTSSTRWSKAVTMFENDERFKA---LERERDRKDMFDDHLDELKQKER 606
++K +L + V +S WS D R+++ LERE K +F++H++ L +K+R
Sbjct: 901 QNFKALLSDMVR-SSDVSWSDTRRTLRKDHRWESGSLLEREEKEK-LFNEHIEALTKKKR 958
Query: 607 AKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDR 657
+R+ L+ I + W++V+ ++ D RC + DR
Sbjct: 959 E-----------HFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDR 998
Score = 126 (49.4 bits), Expect = 3.2e-16, Sum P(4) = 3.2e-16
Identities = 55/225 (24%), Positives = 97/225 (43%)
Query: 538 AEERRLKLKKAR-DDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDD 596
A ER + +AR +K ML E ST W K + D R+ L ++RK +FD
Sbjct: 651 ARERAIVPLEARMKQFKDMLLERGVSAFST-WEKELHKIVFDPRYLLLN-PKERKQVFDQ 708
Query: 597 HLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKM- 655
++ ++ER + + + + +++K +E F T + + + D R ++KM
Sbjct: 709 YVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRAT-FSEFAAKHAKDSRFKAIEKMK 767
Query: 656 DRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTE-RKNRDEFRKLMEADVALGTLTAKTNWR 714
DR +F SKT K + +F +L+ L +++ W
Sbjct: 768 DREALFNEFVAAARKKEKED--------SKTRGEKIKSDFFELLSNH----HLDSQSRWS 815
Query: 715 DYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTR 759
KV+ P Y AV S+ S +DLF+ +E++ K +K +
Sbjct: 816 KVKDKVESDPRYKAVDSS---SMREDLFKQYIEKIAKNLDSEKEK 857
Score = 111 (44.1 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 264 TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKAS--IKGTQSET 321
T+ A A ++W E+ + DG+ YYYN T +S W P ELK + EK IK E
Sbjct: 425 TLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLEEKIKEPIKEPSEEP 484
Query: 322 SP 323
P
Sbjct: 485 LP 486
Score = 107 (42.7 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 36/181 (19%), Positives = 65/181 (35%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPS 333
W E +PDG+ YYYN T++S W+ PD +K+ +Q+E + Q++ +Q
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVI-QQSELTPMLAAQAQVQAQAQAQAQ--- 192
Query: 334 SVVKAPSSADIXXXXXXXXXXXXXXXXXXXXXXXTQPALXXXXXXXXXXXXXXXANADGF 393
+ +A + A Q A
Sbjct: 193 AQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQVQAQVQAQVQ 252
Query: 394 PKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDA 453
+ V A P +SS AV+ +T + ++ ++ + + A P ++T A
Sbjct: 253 AQAVGASTP---TTSSPAPAVSTSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSA 309
Query: 454 V 454
V
Sbjct: 310 V 310
Score = 106 (42.4 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261
++W E+ +ADG+ YY+N RT STW+KP EL
Sbjct: 433 SEWTEYKTADGKTYYYNNRTLESTWEKPQEL 463
Score = 86 (35.3 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKP 258
W E+ + DG+ YY+N RTR S W KP
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKP 162
Score = 79 (32.9 bits), Expect = 8.5e-21, Sum P(3) = 8.5e-21
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKV 290
T W + D R +++N TR+S WD+P +L I RAD K P +K +
Sbjct: 532 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL---IGRADVD---KIIQEPPHKKGM--EE 583
Query: 291 TKQSKWSLPDELKLAREQAEKASIKGTQ 318
K+ + P L + + Q ++IK Q
Sbjct: 584 LKKLRHPTPTMLSIQKWQFSMSAIKEEQ 611
Score = 75 (31.5 bits), Expect = 4.9e-11, Sum P(4) = 4.9e-11
Identities = 53/236 (22%), Positives = 95/236 (40%)
Query: 546 KKARDDYKKMLEESVELTSSTRWSKAVTMFEN----------DERFKALERERD-RKDMF 594
KK ++ KK+ + + S +W +++ + DE KA +R+RD KD+
Sbjct: 578 KKGMEELKKLRHPTPTMLSIQKWQFSMSAIKEEQELMEEINEDEPVKAKKRKRDDNKDI- 636
Query: 595 DDHLDELKQKERAKAQEERKRNIIEYR--KFLESC--DFIKANTQWRKVQDRLEADERCS 650
D E + KA ER +E R +F + + A + W K ++ D R
Sbjct: 637 -DSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYL 695
Query: 651 RLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNR-----DEFRKLMEADVALG 705
L+ +R ++F + E+KN+ ++F+K+ME
Sbjct: 696 LLNPKERKQVFDQYVKTRAEE------------ERREKKNKIMQAKEDFKKMMEE----A 739
Query: 706 TLTAKTNWRDYCIK-VKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQED-KTR 759
+ + ++ K KDS + A+ LF + V +K+ +ED KTR
Sbjct: 740 KFNPRATFSEFAAKHAKDSR-FKAIEKMKDREA---LFNEFVAAARKKEKEDSKTR 791
Score = 75 (31.5 bits), Expect = 4.9e-11, Sum P(4) = 4.9e-11
Identities = 54/296 (18%), Positives = 116/296 (39%)
Query: 500 WDQALRAIINDRRYGALRTLGERKTAFNEYLGQKK-KQDAEERRLKLKKARDDYKKMLEE 558
+DQ ++ + R + + K F + + + K A K A+D K +E+
Sbjct: 706 FDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEK 765
Query: 559 SVELTSSTRWSKAVTMFENDERFKALER-ERDRKDMFD----DHLDELKQ--KERAKAQE 611
+ +++ V E+ + R E+ + D F+ HLD + K + K +
Sbjct: 766 MKD--REALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVES 823
Query: 612 ERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFXXXXXXXXXX 671
+ + ++ E D K + K+ L++++ L++ R+E
Sbjct: 824 DPRYKAVDSSSMRE--DLFKQYIE--KIAKNLDSEKE-KELERQARIE--ASLREREREV 876
Query: 672 XXXXXXXXXXXXSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVAS 731
+ E+ R+E + +A ++ ++ +W D ++ + + S
Sbjct: 877 QKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWES-GS 935
Query: 732 NTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLED 787
+ LF + +E L K+ +E ++ D ITL+STW ++ K + ED
Sbjct: 936 LLEREEKEKLFNEHIEALTKKKREHFRQLLDETSA--ITLTSTW--KEVKKIIKED 987
Score = 62 (26.9 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 16 PHQPPMVGSMDPPRG--FGPPIPSQYRPLVPAPQP 48
P PP + SM PP G F P +P P PA P
Sbjct: 98 PFMPPPMSSMPPPPGMMFPPGMPPVTAPGTPALPP 132
Score = 55 (24.4 bits), Expect = 8.3e-28, Sum P(4) = 8.3e-28
Identities = 21/69 (30%), Positives = 25/69 (36%)
Query: 16 PHQPPMVGSMDPPRGFGPPIP-SQYRPLVPAPQPQHYVPMASQHFQP-GGQGGLIMNAGF 73
P PP PP PP P R P P+P P + P GG+ G
Sbjct: 32 PAPPPNAVMRGPPPLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIPPPMG- 90
Query: 74 PSQPLQPPF 82
P +PPF
Sbjct: 91 PPHLQRPPF 99
Score = 47 (21.6 bits), Expect = 5.4e-22, Sum P(4) = 5.4e-22
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 305 AREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPS 340
A A+ S TQ +T P+S S++ P+ V P+
Sbjct: 289 ATSVAQTVSTPTTQDQT-PSSAVSVATPTVSVSTPA 323
Score = 38 (18.4 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 584 LERERDRKDMFDDHLDELKQ--KERAKAQEER 613
L E + +D ++ + E+K+ KE +EE+
Sbjct: 485 LPMETEEEDPKEEPIKEIKEEPKEEEMTEEEK 516
>WB|WBGene00022855 [details] [associations]
symbol:tcer-1 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0016246 GO:GO:0010171 GO:GO:0040011
GO:GO:0042127 GO:GO:0040035 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0040020 EMBL:FO081697 Gene3D:1.10.10.440 InterPro:IPR002713
Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698 HSSP:Q61051
GeneTree:ENSGT00530000062987 KO:K12824 UniGene:Cel.18223
GeneID:174150 KEGG:cel:CELE_ZK1127.9 UCSC:ZK1127.9a CTD:174150
NextBio:882743 HOGENOM:HOG000019394 RefSeq:NP_495443.1
ProteinModelPortal:Q95PX7 SMR:Q95PX7 IntAct:Q95PX7 STRING:Q95PX7
PRIDE:Q95PX7 EnsemblMetazoa:ZK1127.9a WormBase:ZK1127.9a
InParanoid:Q95PX7 OMA:LWVETET ArrayExpress:Q95PX7 Uniprot:Q95PX7
Length = 914
Score = 265 (98.3 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
Identities = 76/258 (29%), Positives = 135/258 (52%)
Query: 420 AEAKNNLSNMSASDLVGASDKVPPPVTEETR----KDAV------RGEKVSDALE---EK 466
AE +NN S S+ SD+ PP +++R K+A+ E+ L+ +
Sbjct: 396 AEEENNQSKKE-SESESESDEDGPPKAKKSRAEKKKEALIAAQKKEKERPRQMLQKPVDP 454
Query: 467 TVEQEHFAYANK----LEAK-NAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGE 521
+E E A + LE + FK +LE NV + T+++ L I+ D+RY +L E
Sbjct: 455 AIEAEMQAAKEREKVPLEERLKQFKEMLEEKNVSTSSTFEKELSKIVFDKRYLSLGAT-E 513
Query: 522 RKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERF 581
R+ F+ + +K + + ERR ++K+A+++++K+L E EL + +S + F D R+
Sbjct: 514 RRACFDAFCREKIESEKAERRKRVKEAKEEFQKLLAEC-ELNGRSSYSSFTSKFGKDPRY 572
Query: 582 KALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQD 641
KA+ER RDR+D F+D + EL +KE+ + + ++++ + K LE + ++W +
Sbjct: 573 KAVERNRDREDAFNDFVGELHKKEKDEKRAKKEKLKAAFVKLLEEQTGLTRKSKWSTTKK 632
Query: 642 RLEADERCSRLDKMDRLE 659
LE +ER LD E
Sbjct: 633 TLEDEERYIALDSSSTRE 650
Score = 192 (72.6 bits), Expect = 4.9e-17, Sum P(3) = 4.9e-17
Identities = 43/156 (27%), Positives = 81/156 (51%)
Query: 461 DALEEKTVEQEHFAYANKL-EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTL 519
DA + +E E ++ EAK F+ LL + ++ D RY A+
Sbjct: 519 DAFCREKIESEKAERRKRVKEAKEEFQKLLAECELNGRSSYSSFTSKFGKDPRYKAVERN 578
Query: 520 GERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDE 579
+R+ AFN+++G+ K++ +E+R K +K + + K+LEE LT ++WS E++E
Sbjct: 579 RDREDAFNDFVGELHKKEKDEKRAKKEKLKAAFVKLLEEQTGLTRKSKWSTTKKTLEDEE 638
Query: 580 RFKALERERDRKDMFDDHLDELKQKERAKAQEERKR 615
R+ AL+ R+ +F + + L + + +EE++R
Sbjct: 639 RYIALDSSSTRESLFREFVANLGDETASDIEEEQER 674
Score = 132 (51.5 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 55/233 (23%), Positives = 106/233 (45%)
Query: 532 QKKKQDAEER-RLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDR 590
+ + Q A+ER ++ L++ +K+MLEE TSST + K ++ D+R+ +L +R
Sbjct: 457 EAEMQAAKEREKVPLEERLKQFKEMLEEKNVSTSST-FEKELSKIVFDKRYLSLGAT-ER 514
Query: 591 KDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCS 650
+ FD E + E+A+ ++ K E++K L C+ + + + + D R
Sbjct: 515 RACFDAFCREKIESEKAERRKRVKEAKEEFQKLLAECE-LNGRSSYSSFTSKFGKDPRYK 573
Query: 651 RLDK-MDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRDEFRKLMEADVALGTLTA 709
+++ DR + F +K E K + F KL+E L T
Sbjct: 574 AVERNRDREDAFNDFVGELHKKEKDEKR------AKKE-KLKAAFVKLLEEQTGL---TR 623
Query: 710 KTNWRDYCIKVKDSPPYMAV-ASNTSGSTPKDLFEDVVEELQKQFQEDKTRIK 761
K+ W ++D Y+A+ +S+T S ++ ++ +E +E++ R K
Sbjct: 624 KSKWSTTKKTLEDEERYIALDSSSTRESLFREFVANLGDETASDIEEEQEREK 676
Score = 124 (48.7 bits), Expect = 9.7e-10, Sum P(3) = 9.7e-10
Identities = 38/147 (25%), Positives = 74/147 (50%)
Query: 465 EKTVEQEHFAYANKLEAKNAFKALLES--ANVGSDWTWDQALRAIINDRRYGALRTLGER 522
+KT+E E A L++ + ++L AN+G D T ++R A + R
Sbjct: 631 KKTLEDEERYIA--LDSSSTRESLFREFVANLG-DETASDIEEEQEREKRLAAQTAIANR 687
Query: 523 KTAFNEYLG-QKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERF 581
+ LG Q +++ E + K+ + D Y+ +L + ++ T ++ W +A + DER+
Sbjct: 688 QKEVEAELGNQLRERTKESEKQKMGEHEDTYRNLLIDLIKSTENS-WHEARRILRKDERY 746
Query: 582 KALER-ERDRKD-MFDDHLDELKQKER 606
+ ++ RK+ +FDDH+ L++K R
Sbjct: 747 ANCDMLDKTRKESLFDDHIKSLERKRR 773
Score = 112 (44.5 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQ 326
W EF +PDGRKYY+N +T+++ W P L + +E AS + QS +Q
Sbjct: 235 WNEFNAPDGRKYYFNSITQENTWEKPKAL-IDQENGGGASPEPVQSAAIAEAQ 286
Score = 107 (42.7 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 62/272 (22%), Positives = 126/272 (46%)
Query: 407 SSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDK---VPPPVTEETRKDAVRGEKVSDAL 463
SSS E++ VA NL + +ASD+ ++ + R+ V E + + L
Sbjct: 645 SSSTRESLFREFVA----NLGDETASDIEEEQEREKRLAAQTAIANRQKEVEAE-LGNQL 699
Query: 464 EEKTVEQEHFAYANKL-EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGE- 521
E+T E E K+ E ++ ++ LL ++ +W +A R + D RY L +
Sbjct: 700 RERTKESEK----QKMGEHEDTYRNLLIDLIKSTENSWHEARRILRKDERYANCDMLDKT 755
Query: 522 -RKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDER 580
+++ F++++ + L+ +K R+ + ++L+ ++T RW A + +++E
Sbjct: 756 RKESLFDDHI----------KSLE-RKRREAFFQVLDNHEKITPMMRWRDAKKIIQDEEE 804
Query: 581 -FKAL----ER--ERDRKDMFD---DHL-DELKQK-ERAKAQEERKRNIIEY-RKFLESC 627
F + ER ERD +D + DHL DE K+ K + + ++E + ++
Sbjct: 805 TFVKIASNSERKVERDFRDWQERRHDHLTDEFKEMLSETKIITHKSKKLMEEGEQHMDIL 864
Query: 628 DFIKANTQWRKVQDRLEADERCSRLDKMDRLE 659
++ + +W ++ + A ER L+ D +E
Sbjct: 865 SVLENDKRWVRMT-AMSASERDRMLE--DHIE 893
Score = 96 (38.9 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 49/239 (20%), Positives = 98/239 (41%)
Query: 538 AEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDR-KDMFDD 596
AEE + KK + + E+ +R K + + A ++E++R + M
Sbjct: 396 AEEENNQSKKESESESESDEDGPPKAKKSRAEK-----KKEALIAAQKKEKERPRQMLQK 450
Query: 597 HLDELKQKERAKAQEERK----RNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRL 652
+D + E A+E K + ++++ LE + + ++ + K ++ D+R L
Sbjct: 451 PVDPAIEAEMQAAKEREKVPLEERLKQFKEMLEEKN-VSTSSTFEKELSKIVFDKRYLSL 509
Query: 653 DKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRDEFRKLMEADVALGTLTAKTN 712
+R F K ++ ++EF+KL+ A+ L +++
Sbjct: 510 GATERRACFDAFCREKIESEKAERR-------KRVKEAKEEFQKLL-AECELN---GRSS 558
Query: 713 WRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITL 771
+ + K P Y AV N +D F D V EL K+ +++K K+ +K + L
Sbjct: 559 YSSFTSKFGKDPRYKAVERNRDR---EDAFNDFVGELHKKEKDEKRAKKEKLKAAFVKL 614
Score = 94 (38.1 bits), Expect = 3.4e-23, Sum P(3) = 3.4e-23
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTD 273
W E + DGR+YYFN T+ +TW+KP L+ AS +
Sbjct: 235 WNEFNAPDGRKYYFNSITQENTWEKPKALIDQENGGGASPE 275
Score = 78 (32.5 bits), Expect = 4.4e-05, Sum P(3) = 4.4e-05
Identities = 47/189 (24%), Positives = 87/189 (46%)
Query: 448 ETRKDAVRGEKVSDA-LEEKTVEQEHFA-YANKLEAKN--AFKALLES-ANVGSDWTWDQ 502
E R+ + E+ ++ + +KT ++ F + LE K AF +L++ + W
Sbjct: 735 EARRILRKDERYANCDMLDKTRKESLFDDHIKSLERKRREAFFQVLDNHEKITPMMRWRD 794
Query: 503 ALRAIINDRR--YGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESV 560
A + II D + + + ERK ++ +D +ERR D++K+ML E+
Sbjct: 795 A-KKIIQDEEETFVKIASNSERKV-------ERDFRDWQERRHD--HLTDEFKEMLSETK 844
Query: 561 ELTSSTR--------WSKAVTMFENDERFKALER----ERDRKDMFDDHLDELKQKERAK 608
+T ++ +++ END+R+ + ERDR M +DH++ L +K
Sbjct: 845 IITHKSKKLMEEGEQHMDILSVLENDKRWVRMTAMSASERDR--MLEDHIENLGRKGTPP 902
Query: 609 --AQEERKR 615
Q+ER R
Sbjct: 903 PPTQQERDR 911
Score = 76 (31.8 bits), Expect = 2.4e-21, Sum P(3) = 2.4e-21
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQ 326
W E + +G+KY+Y+ V + + W P K+ Q E A + +E N +
Sbjct: 168 WVETETAEGKKYFYHPVNRNTIWERPQNAKIVT-QPELAQLIHRATEEEKNRE 219
Score = 65 (27.9 bits), Expect = 3.3e-20, Sum P(3) = 3.3e-20
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 227 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPF--------ELMTTIERADASTDWKEFT 278
EG Q W E +A+G++Y+++ R + W++P EL I RA +E
Sbjct: 163 EG-QELWVETETAEGKKYFYHPVNRNTIWERPQNAKIVTQPELAQLIHRATEEEKNREER 221
Query: 279 SPDGRKYYYNKVTKQSKWSLPDELK 303
P G+ N ++++ PD K
Sbjct: 222 MPHGQ-IPQNPDDAWNEFNAPDGRK 245
Score = 60 (26.2 bits), Expect = 9.7e-12, Sum P(3) = 9.7e-12
Identities = 25/118 (21%), Positives = 50/118 (42%)
Query: 222 QPKSAEGVQ-TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSP 280
+P S+ V T W + D + +++N T+ S W++P + T R D + SP
Sbjct: 338 RPISSTPVSGTPWCVVWTGDDKVFFYNPSTKCSVWERPPD---TYGREDVDKLVQNPPSP 394
Query: 281 DGRKYYYNKVTKQSKWSL------PDELKLAREQAEKASIKGTQSETSPNSQTSISFP 332
+ N+ K+S+ P + K +R + +K ++ Q + + + P
Sbjct: 395 KAEEEN-NQSKKESESESESDEDGPPKAKKSRAEKKKEALIAAQKKEKERPRQMLQKP 451
Score = 39 (18.8 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 28 PRGFGPPI---PSQYRPLVPAPQPQ 49
P +G P P Y P P PQ
Sbjct: 125 PGAYGGPYNGGPGAYGAQAPGPNPQ 149
>UNIPROTKB|F1MKU9 [details] [associations]
symbol:TCERG1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0001106 "RNA polymerase II transcription corepressor activity"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IEA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0001106 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
GeneTree:ENSGT00530000062987 CTD:10915 KO:K12824 OMA:MEEMNED
EMBL:DAAA02020555 IPI:IPI01001763 RefSeq:XP_002689326.1
RefSeq:XP_002704921.2 UniGene:Bt.109736 Ensembl:ENSBTAT00000061039
GeneID:540964 KEGG:bta:540964 NextBio:20878935 ArrayExpress:F1MKU9
Uniprot:F1MKU9
Length = 1062
Score = 239 (89.2 bits), Expect = 1.8e-24, Sum P(3) = 1.8e-24
Identities = 62/224 (27%), Positives = 122/224 (54%)
Query: 444 PVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANK----LEAK-NAFKALLESANVGSDW 498
PV + RK K D+ +E +E E A + LEA+ FK +L V +
Sbjct: 586 PVKAKKRKRD--DNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFS 643
Query: 499 TWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEE 558
TW++ L I+ D RY L ERK F++Y+ + +++ E++ K+ +A++D+KKM+EE
Sbjct: 644 TWEKELHKIVFDPRYLLLNPK-ERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 702
Query: 559 SVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNII 618
+ + +S+ D RFKA+E+ +DR+ +F++ + ++KE+ ++ ++
Sbjct: 703 A-KFNPRVTFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKS 761
Query: 619 EYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMD-RLEIF 661
++ + L + + + ++W KV+D++E+D R +D R ++F
Sbjct: 762 DFFELLSN-HHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 804
Score = 198 (74.8 bits), Expect = 5.4e-20, Sum P(3) = 5.4e-20
Identities = 49/188 (26%), Positives = 96/188 (51%)
Query: 457 EKVSDALEEKTVEQEHFAYANKL-EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGA 515
++V D + E+E NK+ +AK FK ++E A T+ + D R+ A
Sbjct: 667 KQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRVTFSEFAAKHAKDSRFKA 726
Query: 516 LRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMF 575
+ + +R+ FNE++ +K++ E+ + + +K + D+ ++L L S +RWSK
Sbjct: 727 IEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKV 785
Query: 576 ENDERFKALERERDRKDMFDDHLDEL-KQKERAKAQEERKRNIIEYRKFLESCDFIKANT 634
E+D R+KA++ R+D+F +++++ K + K +E ++ IE + KA +
Sbjct: 786 ESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARS 845
Query: 635 QWRKVQDR 642
+ K DR
Sbjct: 846 EQTKEIDR 853
Score = 135 (52.6 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 61/256 (23%), Positives = 119/256 (46%)
Query: 407 SSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRK-DAVRGEKVSDALEE 465
SSS+ E + + + NL + +L + ++ + E R+ R E+ + E
Sbjct: 796 SSSMREDLFKQYIEKIAKNLDSEKEKELERQA-RIEASLREREREVQKARSEQTKEIDRE 854
Query: 466 KTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRY--GALRTLGERK 523
+ ++H + EA FKALL SD +W R + D R+ G+L E++
Sbjct: 855 R---EQH----KREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKE 907
Query: 524 TAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDER--- 580
FNE++ KK R+ ++++L+E+ +T ++ W + + + D R
Sbjct: 908 KLFNEHI-----------EALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIK 956
Query: 581 FKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFL--ESCDFIKANTQWRK 638
F + +R++ R+ F++++ + + AKA R +++ KF+ S I+ + Q K
Sbjct: 957 FSSSDRKKQRE--FEEYIRD--KYITAKADF---RTLLKETKFITYRSKKLIQESDQHLK 1009
Query: 639 -VQDRLEADERCSRLD 653
V+ L+ D+R LD
Sbjct: 1010 DVEKILQNDKRYLVLD 1025
Score = 129 (50.5 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 54/231 (23%), Positives = 105/231 (45%)
Query: 447 EETRKDAVRGEKV-SDALE----EKTVEQEHFAYA-NKLEAKNAFKALLESANVGSDWTW 500
+E RGEK+ SD E Q ++ +K+E+ +KA+ +S+++ D +
Sbjct: 747 KEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAV-DSSSMRED-LF 804
Query: 501 DQALRAIIND---------RRYGALR-TLGERKTAFNEYLGQKKKQ-DAEERRLKLKKAR 549
Q + I + R + +L ER+ + ++ K+ D E + K ++A
Sbjct: 805 KQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAI 864
Query: 550 DDYKKMLEESVELTSSTRWSKAVTMFENDERFKA---LERERDRKDMFDDHLDELKQKER 606
++K +L + V +S WS D R+++ LERE K +F++H++ L +K+R
Sbjct: 865 QNFKALLSDMVR-SSDVSWSDTRRTLRKDHRWESGSLLEREEKEK-LFNEHIEALTKKKR 922
Query: 607 AKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDR 657
+R+ L+ I + W++V+ ++ D RC + DR
Sbjct: 923 E-----------HFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDR 962
Score = 126 (49.4 bits), Expect = 3.0e-12, Sum P(3) = 3.0e-12
Identities = 54/225 (24%), Positives = 96/225 (42%)
Query: 538 AEERRLKLKKAR-DDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDD 596
A ER + +AR +K ML E ST W K + D R+ L ++RK +FD
Sbjct: 615 ARERAIVPLEARMKQFKDMLLERGVSAFST-WEKELHKIVFDPRYLLLN-PKERKQVFDQ 672
Query: 597 HLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKM- 655
++ ++ER + + + + +++K +E F + + + D R ++KM
Sbjct: 673 YVKTRAEEERREKKNKIMQAKEDFKKMMEEAKF-NPRVTFSEFAAKHAKDSRFKAIEKMK 731
Query: 656 DRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTE-RKNRDEFRKLMEADVALGTLTAKTNWR 714
DR +F SKT K + +F +L+ L +++ W
Sbjct: 732 DREALFNEFVAAARKKEKED--------SKTRGEKIKSDFFELLSNH----HLDSQSRWS 779
Query: 715 DYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTR 759
KV+ P Y AV S+ S +DLF+ +E++ K +K +
Sbjct: 780 KVKDKVESDPRYKAVDSS---SMREDLFKQYIEKIAKNLDSEKEK 821
Score = 111 (44.1 bits), Expect = 1.8e-24, Sum P(3) = 1.8e-24
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 264 TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKAS--IKGTQSET 321
T+ A A ++W E+ + DG+ YYYN T +S W P ELK + EK IK E
Sbjct: 389 TLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLEEKIKEPIKEPSEEP 448
Query: 322 SP 323
P
Sbjct: 449 LP 450
Score = 106 (42.4 bits), Expect = 6.0e-24, Sum P(3) = 6.0e-24
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261
++W E+ +ADG+ YY+N RT STW+KP EL
Sbjct: 397 SEWTEYKTADGKTYYYNNRTLESTWEKPQEL 427
Score = 105 (42.0 bits), Expect = 7.6e-24, Sum P(3) = 7.6e-24
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQ 326
W E +PDG+ YYYN T++S W+ PD +K+ +Q+E + Q++ +Q
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVI-QQSELTPMLAAQAQVQAQAQ 188
Score = 80 (33.2 bits), Expect = 2.9e-21, Sum P(3) = 2.9e-21
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKV 290
T W + D R +++N TR+S WD+P +L I RAD K P +K +
Sbjct: 496 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL---IGRADVD---KIIQEPPHKKGM--EE 547
Query: 291 TKQSKWSLPDELKLAREQAEKASIKGTQ 318
K+ + P L + + Q ++IK Q
Sbjct: 548 VKKLRHPTPTMLSIQKWQFSMSAIKEEQ 575
Score = 75 (31.5 bits), Expect = 4.8e-07, Sum P(3) = 4.8e-07
Identities = 53/236 (22%), Positives = 95/236 (40%)
Query: 546 KKARDDYKKMLEESVELTSSTRWSKAVTMFEN----------DERFKALERERD-RKDMF 594
KK ++ KK+ + + S +W +++ + DE KA +R+RD KD+
Sbjct: 542 KKGMEEVKKLRHPTPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPVKAKKRKRDDNKDI- 600
Query: 595 DDHLDELKQKERAKAQEERKRNIIEYR--KFLESC--DFIKANTQWRKVQDRLEADERCS 650
D E + KA ER +E R +F + + A + W K ++ D R
Sbjct: 601 -DSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYL 659
Query: 651 RLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNR-----DEFRKLMEADVALG 705
L+ +R ++F + E+KN+ ++F+K+ME
Sbjct: 660 LLNPKERKQVFDQYVKTRAEE------------ERREKKNKIMQAKEDFKKMMEE----A 703
Query: 706 TLTAKTNWRDYCIK-VKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQED-KTR 759
+ + ++ K KDS + A+ LF + V +K+ +ED KTR
Sbjct: 704 KFNPRVTFSEFAAKHAKDSR-FKAIEKMKDREA---LFNEFVAAARKKEKEDSKTR 755
Score = 71 (30.1 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 53/296 (17%), Positives = 115/296 (38%)
Query: 500 WDQALRAIINDRRYGALRTLGERKTAFNEYLGQKK-KQDAEERRLKLKKARDDYKKMLEE 558
+DQ ++ + R + + K F + + + K K A+D K +E+
Sbjct: 670 FDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRVTFSEFAAKHAKDSRFKAIEK 729
Query: 559 SVELTSSTRWSKAVTMFENDERFKALER-ERDRKDMFD----DHLDELKQ--KERAKAQE 611
+ +++ V E+ + R E+ + D F+ HLD + K + K +
Sbjct: 730 MKD--REALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVES 787
Query: 612 ERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFXXXXXXXXXX 671
+ + ++ E D K + K+ L++++ L++ R+E
Sbjct: 788 DPRYKAVDSSSMRE--DLFKQYIE--KIAKNLDSEKE-KELERQARIE--ASLREREREV 840
Query: 672 XXXXXXXXXXXXSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVAS 731
+ E+ R+E + +A ++ ++ +W D ++ + + S
Sbjct: 841 QKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWES-GS 899
Query: 732 NTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLED 787
+ LF + +E L K+ +E ++ D ITL+STW ++ K + ED
Sbjct: 900 LLEREEKEKLFNEHIEALTKKKREHFRQLLDETSA--ITLTSTW--KEVKKIIKED 951
Score = 65 (27.9 bits), Expect = 1.8e-24, Sum P(3) = 1.8e-24
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 16 PHQPPMVGSMDPPRG--FGPPIPSQYRPLVPAPQP 48
P PP +G+M PP G F P +P P PA P
Sbjct: 98 PFMPPPMGTMPPPPGMMFPPGMPPVTAPGTPALPP 132
Score = 55 (24.4 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 21/69 (30%), Positives = 25/69 (36%)
Query: 16 PHQPPMVGSMDPPRGFGPPIP-SQYRPLVPAPQPQHYVPMASQHFQP-GGQGGLIMNAGF 73
P PP PP PP P R P P+P P + P GG+ G
Sbjct: 32 PAPPPNAVMRGPPPLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIPPPMG- 90
Query: 74 PSQPLQPPF 82
P +PPF
Sbjct: 91 PPHLQRPPF 99
Score = 44 (20.5 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 305 AREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPS 340
A ++ S TQ +T P+S S++ P+ V P+
Sbjct: 253 ASSVSQTVSTPTTQDQT-PSSAVSVATPTVSVSTPA 287
>RGD|1311748 [details] [associations]
symbol:Tcerg1 "transcription elongation regulator 1"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001103 "RNA polymerase II repressing transcription factor
binding" evidence=ISO] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=ISO] [GO:0070064 "proline-rich
region binding" evidence=ISO] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 RGD:1311748
GO:GO:0001106 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
GeneTree:ENSGT00530000062987 CTD:10915 KO:K12824 OMA:MEEMNED
OrthoDB:EOG40CHGM IPI:IPI00367866 RefSeq:NP_001100860.2
Ensembl:ENSRNOT00000025467 GeneID:307474 KEGG:rno:307474
UCSC:RGD:1311748 ArrayExpress:D3ZTL0 Uniprot:D3ZTL0
Length = 1081
Score = 238 (88.8 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
Identities = 61/224 (27%), Positives = 122/224 (54%)
Query: 444 PVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANK----LEAK-NAFKALLESANVGSDW 498
P+ + RK K D+ +E +E E A + LEA+ FK +L V +
Sbjct: 605 PIKAKKRKRD--DNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFS 662
Query: 499 TWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEE 558
TW++ L I+ D RY L ERK F++Y+ + +++ E++ K+ +A++D+KKM+EE
Sbjct: 663 TWEKELHKIVFDPRYLLLNPK-ERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 721
Query: 559 SVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNII 618
+ + +S+ D RFKA+E+ +DR+ +F++ + ++KE+ ++ ++
Sbjct: 722 A-KFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKS 780
Query: 619 EYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMD-RLEIF 661
++ + L + + + ++W KV+D++E+D R +D R ++F
Sbjct: 781 DFFELLSN-HHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 823
Score = 198 (74.8 bits), Expect = 5.8e-20, Sum P(3) = 5.8e-20
Identities = 49/188 (26%), Positives = 96/188 (51%)
Query: 457 EKVSDALEEKTVEQEHFAYANKL-EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGA 515
++V D + E+E NK+ +AK FK ++E A T+ + D R+ A
Sbjct: 686 KQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKA 745
Query: 516 LRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMF 575
+ + +R+ FNE++ +K++ E+ + + +K + D+ ++L L S +RWSK
Sbjct: 746 IEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKV 804
Query: 576 ENDERFKALERERDRKDMFDDHLDEL-KQKERAKAQEERKRNIIEYRKFLESCDFIKANT 634
E+D R+KA++ R+D+F +++++ K + K +E ++ IE + KA +
Sbjct: 805 ESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARS 864
Query: 635 QWRKVQDR 642
+ K DR
Sbjct: 865 EQTKEIDR 872
Score = 135 (52.6 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 61/256 (23%), Positives = 119/256 (46%)
Query: 407 SSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRK-DAVRGEKVSDALEE 465
SSS+ E + + + NL + +L + ++ + E R+ R E+ + E
Sbjct: 815 SSSMREDLFKQYIEKIAKNLDSEKEKELERQA-RIEASLREREREVQKARSEQTKEIDRE 873
Query: 466 KTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRY--GALRTLGERK 523
+ ++H + EA FKALL SD +W R + D R+ G+L E++
Sbjct: 874 R---EQH----KREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKE 926
Query: 524 TAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDER--- 580
FNE++ KK R+ ++++L+E+ +T ++ W + + + D R
Sbjct: 927 KLFNEHI-----------EALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIK 975
Query: 581 FKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFL--ESCDFIKANTQWRK 638
F + +R++ R+ F++++ + + AKA R +++ KF+ S I+ + Q K
Sbjct: 976 FSSSDRKKQRE--FEEYIRD--KYITAKADF---RTLLKETKFITYRSKKLIQESDQHLK 1028
Query: 639 -VQDRLEADERCSRLD 653
V+ L+ D+R LD
Sbjct: 1029 DVEKILQNDKRYLVLD 1044
Score = 129 (50.5 bits), Expect = 1.5e-12, Sum P(3) = 1.5e-12
Identities = 54/231 (23%), Positives = 105/231 (45%)
Query: 447 EETRKDAVRGEKV-SDALE----EKTVEQEHFAYA-NKLEAKNAFKALLESANVGSDWTW 500
+E RGEK+ SD E Q ++ +K+E+ +KA+ +S+++ D +
Sbjct: 766 KEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAV-DSSSMRED-LF 823
Query: 501 DQALRAIIND---------RRYGALR-TLGERKTAFNEYLGQKKKQ-DAEERRLKLKKAR 549
Q + I + R + +L ER+ + ++ K+ D E + K ++A
Sbjct: 824 KQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAI 883
Query: 550 DDYKKMLEESVELTSSTRWSKAVTMFENDERFKA---LERERDRKDMFDDHLDELKQKER 606
++K +L + V +S WS D R+++ LERE K +F++H++ L +K+R
Sbjct: 884 QNFKALLSDMVR-SSDVSWSDTRRTLRKDHRWESGSLLEREEKEK-LFNEHIEALTKKKR 941
Query: 607 AKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDR 657
+R+ L+ I + W++V+ ++ D RC + DR
Sbjct: 942 E-----------HFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDR 981
Score = 126 (49.4 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 55/225 (24%), Positives = 97/225 (43%)
Query: 538 AEERRLKLKKAR-DDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDD 596
A ER + +AR +K ML E ST W K + D R+ L ++RK +FD
Sbjct: 634 ARERAIVPLEARMKQFKDMLLERGVSAFST-WEKELHKIVFDPRYLLLN-PKERKQVFDQ 691
Query: 597 HLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKM- 655
++ ++ER + + + + +++K +E F T + + + D R ++KM
Sbjct: 692 YVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRAT-FSEFAAKHAKDSRFKAIEKMK 750
Query: 656 DRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTE-RKNRDEFRKLMEADVALGTLTAKTNWR 714
DR +F SKT K + +F +L+ L +++ W
Sbjct: 751 DREALFNEFVAAARKKEKED--------SKTRGEKIKSDFFELLSNH----HLDSQSRWS 798
Query: 715 DYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTR 759
KV+ P Y AV S+ S +DLF+ +E++ K +K +
Sbjct: 799 KVKDKVESDPRYKAVDSS---SMREDLFKQYIEKIAKNLDSEKEK 840
Score = 111 (44.1 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 264 TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKAS--IKGTQSET 321
T+ A A ++W E+ + DG+ YYYN T +S W P ELK + EK IK E
Sbjct: 408 TLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLDEKIKEPIKEASEEP 467
Query: 322 SP 323
P
Sbjct: 468 LP 469
Score = 106 (42.4 bits), Expect = 8.3e-24, Sum P(3) = 8.3e-24
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261
++W E+ +ADG+ YY+N RT STW+KP EL
Sbjct: 416 SEWTEYKTADGKTYYYNNRTLESTWEKPQEL 446
Score = 105 (42.0 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQ 326
W E +PDG+ YYYN T++S W+ PD +K+ +Q+E + Q++ +Q
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVI-QQSELTPMLAAQAQVQAQAQ 188
Score = 79 (32.9 bits), Expect = 5.0e-21, Sum P(3) = 5.0e-21
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKV 290
T W + D R +++N TR+S WD+P +L I RAD K P +K +
Sbjct: 515 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL---IGRADVD---KIIQEPPHKKGLEDM- 567
Query: 291 TKQSKWSLPDELKLAREQAEKASIKGTQ 318
K+ + P L + + Q ++IK Q
Sbjct: 568 -KKLRHPAPTMLSIQKWQFSMSAIKEEQ 594
Score = 79 (32.9 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 54/236 (22%), Positives = 95/236 (40%)
Query: 546 KKARDDYKKMLEESVELTSSTRWSKAVTMFEN----------DERFKALERERD-RKDMF 594
KK +D KK+ + + S +W +++ + DE KA +R+RD KD+
Sbjct: 561 KKGLEDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRDDNKDI- 619
Query: 595 DDHLDELKQKERAKAQEERKRNIIEYR--KFLESC--DFIKANTQWRKVQDRLEADERCS 650
D E + KA ER +E R +F + + A + W K ++ D R
Sbjct: 620 -DSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYL 678
Query: 651 RLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNR-----DEFRKLMEADVALG 705
L+ +R ++F + E+KN+ ++F+K+ME
Sbjct: 679 LLNPKERKQVFDQYVKTRAEE------------ERREKKNKIMQAKEDFKKMMEE----A 722
Query: 706 TLTAKTNWRDYCIK-VKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQED-KTR 759
+ + ++ K KDS + A+ LF + V +K+ +ED KTR
Sbjct: 723 KFNPRATFSEFAAKHAKDSR-FKAIEKMKDREA---LFNEFVAAARKKEKEDSKTR 774
Score = 75 (31.5 bits), Expect = 5.1e-07, Sum P(3) = 5.1e-07
Identities = 54/296 (18%), Positives = 116/296 (39%)
Query: 500 WDQALRAIINDRRYGALRTLGERKTAFNEYLGQKK-KQDAEERRLKLKKARDDYKKMLEE 558
+DQ ++ + R + + K F + + + K A K A+D K +E+
Sbjct: 689 FDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEK 748
Query: 559 SVELTSSTRWSKAVTMFENDERFKALER-ERDRKDMFD----DHLDELKQ--KERAKAQE 611
+ +++ V E+ + R E+ + D F+ HLD + K + K +
Sbjct: 749 MKD--REALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVES 806
Query: 612 ERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFXXXXXXXXXX 671
+ + ++ E D K + K+ L++++ L++ R+E
Sbjct: 807 DPRYKAVDSSSMRE--DLFKQYIE--KIAKNLDSEKE-KELERQARIE--ASLREREREV 859
Query: 672 XXXXXXXXXXXXSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVAS 731
+ E+ R+E + +A ++ ++ +W D ++ + + S
Sbjct: 860 QKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWES-GS 918
Query: 732 NTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLED 787
+ LF + +E L K+ +E ++ D ITL+STW ++ K + ED
Sbjct: 919 LLEREEKEKLFNEHIEALTKKKREHFRQLLDETSA--ITLTSTW--KEVKKIIKED 970
Score = 65 (27.9 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 16 PHQPPMVGSMDPPRG--FGPPIPSQYRPLVPAPQP 48
P PP +G+M PP G F P +P P PA P
Sbjct: 98 PFMPPPMGAMPPPPGMMFPPGMPPGTAPGAPALPP 132
Score = 55 (24.4 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 21/69 (30%), Positives = 25/69 (36%)
Query: 16 PHQPPMVGSMDPPRGFGPPIP-SQYRPLVPAPQPQHYVPMASQHFQP-GGQGGLIMNAGF 73
P PP PP PP P R P P+P P + P GG+ G
Sbjct: 32 PAPPPNAVMRGPPPLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIPPPMG- 90
Query: 74 PSQPLQPPF 82
P +PPF
Sbjct: 91 PPHLQRPPF 99
Score = 51 (23.0 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 305 AREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPS 340
A A+ S TQ +T P+S S++ P+ V AP+
Sbjct: 272 ATSVAQTVSTPTTQDQT-PSSAVSVATPTVSVSAPA 306
>UNIPROTKB|F1RM10 [details] [associations]
symbol:TCERG1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0001106 "RNA polymerase II transcription corepressor activity"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IEA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0001106 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
GeneTree:ENSGT00530000062987 KO:K12824 OMA:MEEMNED EMBL:CU462939
EMBL:FP015780 RefSeq:XP_003354387.2 Ensembl:ENSSSCT00000015755
GeneID:100621703 KEGG:ssc:100621703 Uniprot:F1RM10
Length = 1068
Score = 239 (89.2 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 62/224 (27%), Positives = 122/224 (54%)
Query: 444 PVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANK----LEAK-NAFKALLESANVGSDW 498
PV + RK K D+ +E +E E A + LEA+ FK +L V +
Sbjct: 592 PVKAKKRKRD--DNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFS 649
Query: 499 TWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEE 558
TW++ L I+ D RY L ERK F++Y+ + +++ E++ K+ +A++D+KKM+EE
Sbjct: 650 TWEKELHKIVFDPRYLLLNPK-ERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEE 708
Query: 559 SVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNII 618
+ + +S+ D RFKA+E+ +DR+ +F++ + ++KE+ ++ ++
Sbjct: 709 A-KFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKS 767
Query: 619 EYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMD-RLEIF 661
++ + L + + + ++W KV+D++E+D R +D R ++F
Sbjct: 768 DFFELLSN-HHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 810
Score = 198 (74.8 bits), Expect = 3.7e-19, Sum P(3) = 3.7e-19
Identities = 49/188 (26%), Positives = 96/188 (51%)
Query: 457 EKVSDALEEKTVEQEHFAYANKL-EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGA 515
++V D + E+E NK+ +AK FK ++E A T+ + D R+ A
Sbjct: 673 KQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKA 732
Query: 516 LRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMF 575
+ + +R+ FNE++ +K++ E+ + + +K + D+ ++L L S +RWSK
Sbjct: 733 IEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKV 791
Query: 576 ENDERFKALERERDRKDMFDDHLDEL-KQKERAKAQEERKRNIIEYRKFLESCDFIKANT 634
E+D R+KA++ R+D+F +++++ K + K +E ++ IE + KA +
Sbjct: 792 ESDPRYKAVDSSSMREDLFKQYIEKMAKNLDSEKEKELERQARIEASLREREREVQKARS 851
Query: 635 QWRKVQDR 642
+ K DR
Sbjct: 852 EQTKEIDR 859
Score = 135 (52.6 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 61/256 (23%), Positives = 119/256 (46%)
Query: 407 SSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRK-DAVRGEKVSDALEE 465
SSS+ E + + + NL + +L + ++ + E R+ R E+ + E
Sbjct: 802 SSSMREDLFKQYIEKMAKNLDSEKEKELERQA-RIEASLREREREVQKARSEQTKEIDRE 860
Query: 466 KTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRY--GALRTLGERK 523
+ ++H + EA FKALL SD +W R + D R+ G+L E++
Sbjct: 861 R---EQH----KREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKE 913
Query: 524 TAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDER--- 580
FNE++ KK R+ ++++L+E+ +T ++ W + + + D R
Sbjct: 914 KLFNEHI-----------EALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIK 962
Query: 581 FKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFL--ESCDFIKANTQWRK 638
F + +R++ R+ F++++ + + AKA R +++ KF+ S I+ + Q K
Sbjct: 963 FSSSDRKKQRE--FEEYIRD--KYITAKADF---RTLLKETKFITYRSKKLIQESDQHLK 1015
Query: 639 -VQDRLEADERCSRLD 653
V+ L+ D+R LD
Sbjct: 1016 DVEKILQNDKRYLVLD 1031
Score = 127 (49.8 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 36/144 (25%), Positives = 70/144 (48%)
Query: 518 TLGERKTAFNEYLGQKKKQ-DAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFE 576
+L ER+ + ++ K+ D E + K ++A ++K +L + V +S WS
Sbjct: 838 SLREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVR-SSDVSWSDTRRTLR 896
Query: 577 NDERFKA---LERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKAN 633
D R+++ LERE K +F++H++ L +K+R +R+ L+ I
Sbjct: 897 KDHRWESGSLLEREEKEK-LFNEHIEALTKKKRE-----------HFRQLLDETSAITLT 944
Query: 634 TQWRKVQDRLEADERCSRLDKMDR 657
+ W++V+ ++ D RC + DR
Sbjct: 945 STWKEVKKIIKEDPRCIKFSSSDR 968
Score = 126 (49.4 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 55/225 (24%), Positives = 97/225 (43%)
Query: 538 AEERRLKLKKAR-DDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDD 596
A ER + +AR +K ML E ST W K + D R+ L ++RK +FD
Sbjct: 621 ARERAIVPLEARMKQFKDMLLERGVSAFST-WEKELHKIVFDPRYLLLN-PKERKQVFDQ 678
Query: 597 HLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKM- 655
++ ++ER + + + + +++K +E F T + + + D R ++KM
Sbjct: 679 YVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRAT-FSEFAAKHAKDSRFKAIEKMK 737
Query: 656 DRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTE-RKNRDEFRKLMEADVALGTLTAKTNWR 714
DR +F SKT K + +F +L+ L +++ W
Sbjct: 738 DREALFNEFVAAARKKEKED--------SKTRGEKIKSDFFELLSNH----HLDSQSRWS 785
Query: 715 DYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTR 759
KV+ P Y AV S+ S +DLF+ +E++ K +K +
Sbjct: 786 KVKDKVESDPRYKAVDSS---SMREDLFKQYIEKMAKNLDSEKEK 827
Score = 111 (44.1 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 264 TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKAS--IKGTQSET 321
T+ A A ++W E+ + DG+ YYYN T +S W P ELK + EK IK E
Sbjct: 395 TLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLEEKIKEPIKEPSEEP 454
Query: 322 SP 323
P
Sbjct: 455 LP 456
Score = 106 (42.4 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261
++W E+ +ADG+ YY+N RT STW+KP EL
Sbjct: 403 SEWTEYKTADGKTYYYNNRTLESTWEKPQEL 433
Score = 105 (42.0 bits), Expect = 5.2e-23, Sum P(3) = 5.2e-23
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQ 326
W E +PDG+ YYYN T++S W+ PD +K+ +Q+E + Q++ +Q
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVI-QQSELTPMLAAQAQVQAQAQ 188
Score = 80 (33.2 bits), Expect = 1.9e-20, Sum P(3) = 1.9e-20
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKV 290
T W + D R +++N TR+S WD+P +L I RAD K P +K +
Sbjct: 502 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL---IGRADVD---KIIQEPPHKKGM--EE 553
Query: 291 TKQSKWSLPDELKLAREQAEKASIKGTQ 318
K+ + P L + + Q ++IK Q
Sbjct: 554 VKKLRHPTPTMLSIQKWQFSMSAIKEEQ 581
Score = 75 (31.5 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 53/236 (22%), Positives = 95/236 (40%)
Query: 546 KKARDDYKKMLEESVELTSSTRWSKAVTMFEN----------DERFKALERERD-RKDMF 594
KK ++ KK+ + + S +W +++ + DE KA +R+RD KD+
Sbjct: 548 KKGMEEVKKLRHPTPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPVKAKKRKRDDNKDI- 606
Query: 595 DDHLDELKQKERAKAQEERKRNIIEYR--KFLESC--DFIKANTQWRKVQDRLEADERCS 650
D E + KA ER +E R +F + + A + W K ++ D R
Sbjct: 607 -DSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYL 665
Query: 651 RLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNR-----DEFRKLMEADVALG 705
L+ +R ++F + E+KN+ ++F+K+ME
Sbjct: 666 LLNPKERKQVFDQYVKTRAEE------------ERREKKNKIMQAKEDFKKMMEE----A 709
Query: 706 TLTAKTNWRDYCIK-VKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQED-KTR 759
+ + ++ K KDS + A+ LF + V +K+ +ED KTR
Sbjct: 710 KFNPRATFSEFAAKHAKDSR-FKAIEKMKDREA---LFNEFVAAARKKEKEDSKTR 761
Score = 73 (30.8 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 54/296 (18%), Positives = 116/296 (39%)
Query: 500 WDQALRAIINDRRYGALRTLGERKTAFNEYLGQKK-KQDAEERRLKLKKARDDYKKMLEE 558
+DQ ++ + R + + K F + + + K A K A+D K +E+
Sbjct: 676 FDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEK 735
Query: 559 SVELTSSTRWSKAVTMFENDERFKALER-ERDRKDMFD----DHLDELKQ--KERAKAQE 611
+ +++ V E+ + R E+ + D F+ HLD + K + K +
Sbjct: 736 MKD--REALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVES 793
Query: 612 ERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFXXXXXXXXXX 671
+ + ++ E D K + K+ L++++ L++ R+E
Sbjct: 794 DPRYKAVDSSSMRE--DLFKQYIE--KMAKNLDSEKE-KELERQARIE--ASLREREREV 846
Query: 672 XXXXXXXXXXXXSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVAS 731
+ E+ R+E + +A ++ ++ +W D ++ + + S
Sbjct: 847 QKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWES-GS 905
Query: 732 NTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLED 787
+ LF + +E L K+ +E ++ D ITL+STW ++ K + ED
Sbjct: 906 LLEREEKEKLFNEHIEALTKKKREHFRQLLDETSA--ITLTSTW--KEVKKIIKED 957
Score = 57 (25.1 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 16 PHQPPMVGSMDPPRG--FGPPIPSQYRPLVPAPQP 48
P PP +G+M PP G F P +P PA P
Sbjct: 98 PFMPPPMGTMPPPPGMMFPPGMPPVTAAGAPALPP 132
Score = 55 (24.4 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 21/69 (30%), Positives = 25/69 (36%)
Query: 16 PHQPPMVGSMDPPRGFGPPIP-SQYRPLVPAPQPQHYVPMASQHFQP-GGQGGLIMNAGF 73
P PP PP PP P R P P+P P + P GG+ G
Sbjct: 32 PAPPPNAVMRGPPPLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIPPPMG- 90
Query: 74 PSQPLQPPF 82
P +PPF
Sbjct: 91 PPHLQRPPF 99
Score = 44 (20.5 bits), Expect = 9.5e-17, Sum P(3) = 9.5e-17
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 305 AREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPS 340
A ++ S TQ +T P+S S++ P+ V P+
Sbjct: 259 ASSVSQTVSTPTTQDQT-PSSAVSVATPTVSVSTPA 293
>SGD|S000001495 [details] [associations]
symbol:PRP40 "U1 snRNP protein involved in splicing"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IMP] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
SGD:S000001495 EMBL:BK006944 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0000398 EMBL:S53418 GO:GO:0071004
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 GO:GO:0005685 KO:K12821 eggNOG:COG5104
GeneTree:ENSGT00530000062987 OrthoDB:EOG41VPBS EMBL:Z28012
PIR:S30014 RefSeq:NP_012913.3 RefSeq:NP_012915.3 PDB:1O6W PDB:2B7E
PDB:2KFD PDBsum:1O6W PDBsum:2B7E PDBsum:2KFD
ProteinModelPortal:P33203 SMR:P33203 DIP:DIP-1620N IntAct:P33203
MINT:MINT-386201 STRING:P33203 PaxDb:P33203 EnsemblFungi:YKL012W
GeneID:853857 GeneID:853859 KEGG:sce:YKL010C KEGG:sce:YKL012W
CYGD:YKL012w HOGENOM:HOG000001088 KO:K10590 OMA:DDDPLWK
EvolutionaryTrace:P33203 NextBio:975100 Genevestigator:P33203
GermOnline:YKL012W Uniprot:P33203
Length = 583
Score = 171 (65.3 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 32/79 (40%), Positives = 45/79 (56%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
WKE A GR YY+N T+ STW+KP EL++ E WK + DG+ YYYN T+
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTR 63
Query: 293 QSKWSLPDELKLAREQAEK 311
++ W++P K AE+
Sbjct: 64 ETSWTIPAFEKKVEPIAEQ 82
Score = 166 (63.5 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 68/313 (21%), Positives = 132/313 (42%)
Query: 466 KTVEQEHFAYAN--KL---------EAKNAFKALLESANVGSDWTWDQALRAI-INDRRY 513
+T+ +E YAN KL EA+ F +L+ V S W++ + + + D RY
Sbjct: 109 RTINEEESQYANNSKLLNVRRRTKEEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRY 168
Query: 514 GALRTLGE-RKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAV 572
+ +K F +YL + + + K ++ ++KML+ + + TRW A
Sbjct: 169 WMVDDDPLWKKEMFEKYLSNRSADQLLKEHNETSKFKEAFQKMLQNNSHIKYYTRWPTAK 228
Query: 573 TMFENDERFK-ALERERDRKDMFDDHLDEL--KQKE-RAKAQEERKRNIIEYRKFLESCD 628
+ ++ +K ++ E+ ++ F D++D L QKE + K + + + + EY + +
Sbjct: 229 RLIADEPIYKHSVVNEKTKRQTFQDYIDTLIDTQKESKKKLKTQALKELREYLNGIITTS 288
Query: 629 FIKANTQWRKVQD--------RLEADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXX 680
+ W+++ + R A+ L D L +
Sbjct: 289 SSETFITWQQLLNHYVFDKSKRYMANRHFKVLTHEDVLNEYLKIVNTIENDLQNKLNELR 348
Query: 681 XXXSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKD 740
+R RD F+ L+ +V + + A T W D +K P ++ + +GS+ D
Sbjct: 349 LRNYTRDRIARDNFKSLLR-EVPI-KIKANTRWSDIYPHIKSDPRFLHMLGR-NGSSCLD 405
Query: 741 LFEDVVEELQKQF 753
LF D V+E Q+ +
Sbjct: 406 LFLDFVDE-QRMY 417
Score = 77 (32.2 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 37/171 (21%), Positives = 77/171 (45%)
Query: 459 VSDALEEKTVEQEHFAYANKLEAKNAFKALLESA--NVGSDWTWDQALRAIINDRRYGAL 516
+ + L+ K E Y A++ FK+LL + ++ W I +D R+ L
Sbjct: 336 IENDLQNKLNELRLRNYTRDRIARDNFKSLLREVPIKIKANTRWSDIYPHIKSDPRF--L 393
Query: 517 RTLGERKTA----FNEYLGQKKKQDAEERRLKLKKARD-DYKKMLEESVELTSSTRWSKA 571
LG ++ F +++ +++ +R + + D +++ +S E+T
Sbjct: 394 HMLGRNGSSCLDLFLDFVDEQRMYIFAQRSIAQQTLIDQNFEWNDADSDEITKQN----I 449
Query: 572 VTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRK 622
+ END +F +++E D + D + + +K + K Q ER+ I+E +K
Sbjct: 450 EKVLENDRKFDKVDKE-DISLIVDGLIKQRNEKIQQKLQNERR--ILEQKK 497
Score = 76 (31.8 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKP-FE 260
+ WK +ADG+ YY+N TR ++W P FE
Sbjct: 42 ENGWKAAKTADGKVYYYNPTTRETSWTIPAFE 73
Score = 60 (26.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 26/96 (27%), Positives = 45/96 (46%)
Query: 689 KNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEE 748
K ++ F+K+++ + + T W + D P Y N T + F+D ++
Sbjct: 203 KFKEAFQKMLQNN---SHIKYYTRWPTAKRLIADEPIYKHSVVNEK--TKRQTFQDYIDT 257
Query: 749 LQKQFQEDKTRIK-DAVK-LRK-----ITLSSTWTF 777
L +E K ++K A+K LR+ IT SS+ TF
Sbjct: 258 LIDTQKESKKKLKTQALKELREYLNGIITTSSSETF 293
>FB|FBgn0261641 [details] [associations]
symbol:CG42724 species:7227 "Drosophila melanogaster"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 EMBL:AE014297 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
HSSP:Q61051 GeneTree:ENSGT00530000062987 UniGene:Dm.2280
GeneID:40785 KEGG:dme:Dmel_CG42724 FlyBase:FBgn0261641
GenomeRNAi:40785 NextBio:820572 EMBL:AY069106 RefSeq:NP_001189186.1
RefSeq:NP_788585.1 SMR:Q9VI14 MINT:MINT-794860
EnsemblMetazoa:FBtr0303014 EnsemblMetazoa:FBtr0303017
UCSC:CG33097-RA InParanoid:Q9VI14 Uniprot:Q9VI14
Length = 763
Score = 205 (77.2 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 48/165 (29%), Positives = 94/165 (56%)
Query: 447 EETRKDAVRGEKVSDALEEKTVEQEHFAYANK----LEAK-NAFKALLESANVGSDWTWD 501
EE VR S E+ +E E A + LE + FK +L +V + TW+
Sbjct: 548 EEVPTKRVRMISKSKRAEDAALEAEQRAAKERALVPLEMRVTQFKEMLREKDVSAFSTWE 607
Query: 502 QALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVE 561
+ L I+ D RY L T ERK F +Y+ + +++ +E+R K+++ R+D++ ++EE+
Sbjct: 608 KELHKIVFDPRY-LLLTSKERKQVFEKYVKDRAEEERKEKRNKMRQKREDFRSLMEEA-R 665
Query: 562 LTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKER 606
L + +S+ DER++A+E+ R+R+ +F++++ E++++E+
Sbjct: 666 LHGKSSFSEFSQRNAKDERYRAIEKVRERESLFNEYIVEVRRREK 710
Score = 116 (45.9 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 54/240 (22%), Positives = 114/240 (47%)
Query: 433 DLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKA--LLE 490
DL+ D V V E + EK ++A E+K+ E+ AN+ +AK+ +A L +
Sbjct: 470 DLLNRED-VDKAVNERPEQLKTPQEKSAEA-EQKSGEE-----ANQEQAKSQVQAQQLDQ 522
Query: 491 SANVGSDWTWDQALRAIINDRRYGA-------LRTLGERKTAFNEYLGQKKKQDAEERRL 543
V +D D + I + +R + + K A + L + +++ A+ER L
Sbjct: 523 VQRVDADDDDDDEVIKIRTESESSVEEVPTKRVRMISKSKRAEDAAL-EAEQRAAKERAL 581
Query: 544 -KLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELK 602
L+ +K+ML E ++++ + W K + D R+ L ++RK +F+ ++ +
Sbjct: 582 VPLEMRVTQFKEMLREK-DVSAFSTWEKELHKIVFDPRYLLLT-SKERKQVFEKYVKDRA 639
Query: 603 QKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKM-DRLEIF 661
++ER + + + ++ ++R +E + + + + R DER ++K+ +R +F
Sbjct: 640 EEERKEKRNKMRQKREDFRSLMEEAR-LHGKSSFSEFSQRNAKDERYRAIEKVRERESLF 698
Score = 108 (43.1 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 28/101 (27%), Positives = 54/101 (53%)
Query: 445 VTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNA-FKALLESANVGSDWTWDQA 503
+T + RK + V D EE+ E+ NK+ K F++L+E A + ++ +
Sbjct: 622 LTSKERKQVFE-KYVKDRAEEERKEKR-----NKMRQKREDFRSLMEEARLHGKSSFSEF 675
Query: 504 LRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLK 544
+ D RY A+ + ER++ FNEY+ + ++++ E++ LK
Sbjct: 676 SQRNAKDERYRAIEKVRERESLFNEYIVEVRRREKEDKLLK 716
Score = 95 (38.5 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPD--ELKLARE-QAEKASIKGTQS-ETSPNS-QTS 328
W E + DGR YYY+ VT+++ WS PD +K+ + + E+ + + Q+ +T + +TS
Sbjct: 117 WVETKAEDGRSYYYHAVTRETTWSRPDGPAVKIMTQAEVEEMAKRPAQAAKTEAKAGETS 176
Query: 329 ISFP 332
+ P
Sbjct: 177 VEIP 180
Score = 85 (35.0 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 20/71 (28%), Positives = 33/71 (46%)
Query: 271 STDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSE--TSPNSQTS 328
+ +W E +PDGR YY++ +S W P L+ E A A+ G T+P+
Sbjct: 294 AAEWSEHRAPDGRPYYFHAGRGESVWEKPQALR-DMEAARMAAHSGVAPAVATAPSGLPP 352
Query: 329 ISFPSSVVKAP 339
P+ ++ P
Sbjct: 353 HLLPNPMMHMP 363
Score = 84 (34.6 bits), Expect = 9.8e-18, Sum P(4) = 9.8e-18
Identities = 23/106 (21%), Positives = 49/106 (46%)
Query: 224 KSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERAD-ASTDWKEFTSPDG 282
K+A+ + + +A+ +R ++ + + K + + A T W + D
Sbjct: 392 KAAQAAALEKEAKKAAEEKRKKEEEQKKAAASAKQTDKSRPVTSTPIAGTPWCVVWTGDS 451
Query: 283 RKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTS 328
R ++YN T+ S W P++L L RE +KA + + +P +++
Sbjct: 452 RVFFYNPSTRTSVWDRPEDL-LNREDVDKAVNERPEQLKTPQEKSA 496
Score = 83 (34.3 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 232 DWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERA 268
+W EH + DGR YYF+ S W+KP + + +E A
Sbjct: 296 EWSEHRAPDGRPYYFHAGRGESVWEKP-QALRDMEAA 331
Score = 79 (32.9 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 223 PKSAEGVQTD---WKEHTSADGRRYYFNKRTRVSTWDKP 258
P A GV W E + DGR YY++ TR +TW +P
Sbjct: 104 PSGANGVTGPPEIWVETKAEDGRSYYYHAVTRETTWSRP 142
Score = 76 (31.8 bits), Expect = 6.2e-17, Sum P(4) = 6.2e-17
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 206 DEQMXXXXXXXXXXXXQPKSAEGVQ-TDWKEHTSADGRRYYFNKRTRVSTWDKPFELM 262
+EQ +P ++ + T W + D R +++N TR S WD+P +L+
Sbjct: 415 EEQKKAAASAKQTDKSRPVTSTPIAGTPWCVVWTGDSRVFFYNPSTRTSVWDRPEDLL 472
Score = 70 (29.7 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 37/184 (20%), Positives = 78/184 (42%)
Query: 595 DDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDK 654
D L+ ++ + +A + + ++++ L D + A + W K ++ D R L
Sbjct: 566 DAALEAEQRAAKERALVPLEMRVTQFKEMLREKD-VSAFSTWEKELHKIVFDPRYLLLTS 624
Query: 655 MDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRDEFRKLMEADVALGTLTAKTNWR 714
+R ++F +K +K R++FR LME L K+++
Sbjct: 625 KERKQVFEKYVKDRAEEERKEKR------NKMRQK-REDFRSLMEE----ARLHGKSSFS 673
Query: 715 DYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKD---AVKLR-KIT 770
++ + Y A+ + LF + + E++++ +EDK K+ A +L+ K T
Sbjct: 674 EFSQRNAKDERYRAIEKVRERES---LFNEYIVEVRRREKEDKLLKKEQPLASRLQHKCT 730
Query: 771 LSST 774
+T
Sbjct: 731 TQNT 734
Score = 57 (25.1 bits), Expect = 9.8e-18, Sum P(4) = 9.8e-18
Identities = 24/84 (28%), Positives = 31/84 (36%)
Query: 2 AEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQP---QHYVPMASQH 58
A+ A + ++P + S PP P P+ PL+ P P Q PM
Sbjct: 166 AKTEAKAGETSVEIPPVSSHLTSQPPPHLMSQPPPNAAAPLLSQPPPNVRQQPPPM---- 221
Query: 59 FQPGGQGGLIMNAGFPSQPL-QPP 81
FQP G GF P PP
Sbjct: 222 FQPPGMQA---PPGFGQPPFCMPP 242
Score = 50 (22.7 bits), Expect = 0.00098, Sum P(3) = 0.00098
Identities = 40/252 (15%), Positives = 96/252 (38%)
Query: 563 TSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRK 622
T ++ W + + ++ KA+ ++ + E +QK +A +E+ ++ ++ ++
Sbjct: 460 TRTSVWDRPEDLLNREDVDKAVNERPEQLKTPQEKSAEAEQKSGEEANQEQAKSQVQAQQ 519
Query: 623 FLESCDFIKANTQW--RKVQDRLEADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXX 680
L+ + A+ ++ R E++ + R+ +
Sbjct: 520 -LDQVQRVDADDDDDDEVIKIRTESESSVEEVPTK-RVRMISKSKRAEDAALEAEQRAAK 577
Query: 681 XXXSKTERKNRDEFRKLM-EADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPK 739
+F++++ E DV+ A + W K+ P Y+ + S +
Sbjct: 578 ERALVPLEMRVTQFKEMLREKDVS-----AFSTWEKELHKIVFDPRYLLLTSKERKQVFE 632
Query: 740 DLFEDVVEELQKQFQEDKTRIK--DAVKL-RKITLSSTWTFEDFKASVLEDATSPPISDV 796
+D EE +K+ + +K R K D L + L +F +F +D I V
Sbjct: 633 KYVKDRAEEERKE-KRNKMRQKREDFRSLMEEARLHGKSSFSEFSQRNAKDERYRAIEKV 691
Query: 797 NLK-LIFDDLLI 807
+ +F++ ++
Sbjct: 692 RERESLFNEYIV 703
Score = 47 (21.6 bits), Expect = 9.7e-17, Sum P(3) = 9.7e-17
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 44 PAPQPQHYVPMASQHFQPG-GQGGLIMNAGF 73
P+ P H +P H PG G G +A F
Sbjct: 347 PSGLPPHLLPNPMMHMPPGSGPPGFDPHAAF 377
Score = 40 (19.1 bits), Expect = 9.8e-18, Sum P(4) = 9.8e-18
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 110 LPNAQPSNHIPPSSLP 125
LPN P H+PP S P
Sbjct: 355 LPN--PMMHMPPGSGP 368
>UNIPROTKB|H0YG38 [details] [associations]
symbol:PRPF40A "Pre-mRNA-processing factor 40 homolog A"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC079344
EMBL:AC012443 HGNC:HGNC:16463 ChiTaRS:PRPF40A
Ensembl:ENST00000493468 Bgee:H0YG38 Uniprot:H0YG38
Length = 346
Score = 235 (87.8 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 50/122 (40%), Positives = 73/122 (59%)
Query: 225 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRK 284
+A G ++ W EH S DGR YY+N T+ STW+KP +L T E+ + WKE+ S G+
Sbjct: 131 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKP 190
Query: 285 YYYNKVTKQSKWSLPDELK-L-AREQAEKASIKG--TQSETSPNSQTSISFPSSVVKAPS 340
YYYN TK+S+W+ P EL+ L A +AE++S + T + T+P T I S + A
Sbjct: 191 YYYNSQTKESRWAKPKELEDLEAMIKAEESSKQEECTTTSTAPVPTTEIPTTMSTMAAAE 250
Query: 341 SA 342
+A
Sbjct: 251 AA 252
Score = 47 (21.6 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 394 PKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLV-GASDKVPPPVTEETRKD 452
P T+ +A ++ + A A A N ++ SAS+ V G VP P
Sbjct: 240 PTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSGTVPVVPEPEVTSIVAT 299
Query: 453 AVRGEK-VSDALEEK 466
V E V+ + EE+
Sbjct: 300 VVDNENTVTISTEEQ 314
>CGD|CAL0003333 [details] [associations]
symbol:orf19.3250 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 CGD:CAL0003333 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:AACQ01000049 EMBL:AACQ01000048 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0 eggNOG:COG5104
RefSeq:XP_717875.1 RefSeq:XP_717941.1 ProteinModelPortal:Q5A878
STRING:Q5A878 GeneID:3640384 GeneID:3640462 KEGG:cal:CaO19.10760
KEGG:cal:CaO19.3250 Uniprot:Q5A878
Length = 602
Score = 207 (77.9 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 82/395 (20%), Positives = 180/395 (45%)
Query: 393 FPKTVDAIAPMIDVSSSIGEAVTDNTVAE-AKNNLSNMSASDLVGASD-KVPPPVTEETR 450
FP+T + + P+ + +I + T E ++ + + G + + P + EE
Sbjct: 29 FPETEETL-PVSEKQETITTSTTTGKWEEYTTDDGKKYYYNAITGETTWEKPNEIIEEEL 87
Query: 451 KDAVRGEK--VSD---ALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALR 505
+ EK +S+ L+ K VE EAK +F LL V S W++ +
Sbjct: 88 SNEKLAEKTELSELDKTLKSKPVELTGPTSKTDNEAKQSFLKLLSDNKVNSTWSFQAVME 147
Query: 506 AIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLE--ESVEL- 562
+++ Y +++ RK + EYL K + + + L L+ + ++ + L E+ L
Sbjct: 148 NLVDKPEYWSVKDPVTRKQLYEEYLVSKFQSELSNKSLLLENFKRNFNEELRKLEAKNLV 207
Query: 563 TSSTRWS--KAVTMFENDERFK-ALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIE 619
T +TRW K + + +++ FK ++ + + +F ++ D+L+++ Q ++ + +IE
Sbjct: 208 TYNTRWITIKKLWIDQDNPIFKHSMMSDSELAAIFYEYTDKLREQHEKLLQTKKNQALIE 267
Query: 620 YRKFLESCD--FIKANTQWRKVQDRLEADERCS------RLDKMDRLEIFXXXXXXXXXX 671
+L + ++ + W + + L D R L K++ L+++
Sbjct: 268 LSTYLRQVNSSLVEKSQTWESLYENLINDSRFQSNKNFQNLTKLNILQLYENEIFPRRID 327
Query: 672 XXXXXXXXXXXXS-KTERKNRDEFRKLM-EADVALGTLTAKTNWRDYCIKVKDSPPYMAV 729
+ + +RK R+ ++KL+ E ++ A T ++D K++++ ++ +
Sbjct: 328 DIKSQITVISKINYRNDRKARESYKKLLGELEI-----DADTEFKDIIDKIENNDAFIEI 382
Query: 730 ASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAV 764
+GS+ +LF D+V+E +KQ + K + D+V
Sbjct: 383 CGR-NGSSALELFWDIVDE-KKQILKVKKNLVDSV 415
Score = 158 (60.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 35/118 (29%), Positives = 63/118 (53%)
Query: 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKP--------FELMTTIERADASTDWKEFTSP 280
+ +DW+E + G YY+N +T ++W P E TI + + W+E+T+
Sbjct: 1 MSSDWEELRTETGEVYYYNYKTNETSWTFPETEETLPVSEKQETITTSTTTGKWEEYTTD 60
Query: 281 DGRKYYYNKVTKQSKWSLPDEL---KLAREQ-AEKASIKGTQSETSPNSQTSISFPSS 334
DG+KYYYN +T ++ W P+E+ +L+ E+ AEK + +T + ++ P+S
Sbjct: 61 DGKKYYYNAITGETTWEKPNEIIEEELSNEKLAEKTELSELD-KTLKSKPVELTGPTS 117
Score = 84 (34.6 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 55/261 (21%), Positives = 104/261 (39%)
Query: 465 EKTVEQ-EHFAYANKLEAKNAFKALLESAN---VGSDWTWDQALRAIINDRRYGA----- 515
+K EQ E K +A L N V TW+ +IND R+ +
Sbjct: 247 DKLREQHEKLLQTKKNQALIELSTYLRQVNSSLVEKSQTWESLYENLINDSRFQSNKNFQ 306
Query: 516 -LRTLGERKTAFNEYLGQK----KKQDAEERRLKLK---KARDDYKKMLEESVELTSSTR 567
L L + NE ++ K Q ++ + KAR+ YKK+L E +E+ + T
Sbjct: 307 NLTKLNILQLYENEIFPRRIDDIKSQITVISKINYRNDRKARESYKKLLGE-LEIDADTE 365
Query: 568 WSKAVTMFENDERFKAL--ERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLE 625
+ + EN++ F + ++F D +DE KQ + K +N+++ +
Sbjct: 366 FKDIIDKIENNDAFIEICGRNGSSALELFWDIVDEKKQILKVK------KNLVD--SVIS 417
Query: 626 SCDFIKANTQWRKVQDRLEADE---RCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXX 682
+ NT K+ + LE + +R +++ L++
Sbjct: 418 TMK--NGNTYDEKMWESLETFSNALKSTRDERLANLDLTLGDGGKGKEITMIYTSLKEEF 475
Query: 683 XSKTERKNRDEFRKLMEADVA 703
K +++ R+++ K M+ D+A
Sbjct: 476 ELKKQQE-REKYLKKMDEDIA 495
Score = 63 (27.2 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 53/237 (22%), Positives = 95/237 (40%)
Query: 393 FPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKD 452
FP+ +D I I V S I D E+ L D A + + + D
Sbjct: 322 FPRRIDDIKSQITVISKINYR-NDRKARESYKKLLGELEID---ADTEFKDIIDKIENND 377
Query: 453 A---VRGEKVSDALEE--KTVEQEHFAYANKLEAKNAFKALLESANVGSD--W----TWD 501
A + G S ALE V+++ K ++ + +++ N + W T+
Sbjct: 378 AFIEICGRNGSSALELFWDIVDEKKQILKVKKNLVDSVISTMKNGNTYDEKMWESLETFS 437
Query: 502 QALRAIINDRRYGALRTLGER---KTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEE 558
AL++ ++R TLG+ K Y K EE LK ++ R+ Y K ++E
Sbjct: 438 NALKSTRDERLANLDLTLGDGGKGKEITMIYTSLK-----EEFELKKQQEREKYLKKMDE 492
Query: 559 SVELTSSTRWSKAVTMFEND----ERFKALERER---DRKDMFDDHLDELKQKERAK 608
++ RW +++ND E F +E R + ++D ++L + ++ K
Sbjct: 493 --DIAKLARW-----IYDNDRNLGENFLRMEGTRFVISNRVNYEDEYEKLSKFDQFK 542
Score = 56 (24.8 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 39/219 (17%), Positives = 90/219 (41%)
Query: 458 KVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGAL- 516
++ D + TV + Y N +A+ ++K LL + +D + + I N+ + +
Sbjct: 325 RIDDIKSQITVISK-INYRNDRKARESYKKLLGELEIDADTEFKDIIDKIENNDAFIEIC 383
Query: 517 -RTLGERKTAFNEYLGQKK-----KQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSK 570
R F + + +KK K++ + + K + Y + + ES+E S+ S
Sbjct: 384 GRNGSSALELFWDIVDEKKQILKVKKNLVDSVISTMKNGNTYDEKMWESLETFSNALKST 443
Query: 571 AVTMFEN-DERFKALERERDRKDMFDDHLDEL---KQKERAKAQEERKRNIIEYRKFLES 626
N D + ++ ++ +E KQ+ER K ++ +I + +++
Sbjct: 444 RDERLANLDLTLGDGGKGKEITMIYTSLKEEFELKKQQEREKYLKKMDEDIAKLARWIYD 503
Query: 627 CD------FIKANTQWRKVQDRLEADERCSRLDKMDRLE 659
D F++ + +R+ ++ +L K D+ +
Sbjct: 504 NDRNLGENFLRMEGTRFVISNRVNYEDEYEKLSKFDQFK 542
>WB|WBGene00022853 [details] [associations]
symbol:ZK1127.6 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] GO:GO:0016246 GO:GO:0000003
EMBL:FO081697 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SMART:SM00441 SUPFAM:SSF81698 GeneTree:ENSGT00530000062987
PIR:E88196 RefSeq:NP_495441.1 ProteinModelPortal:Q23398 SMR:Q23398
STRING:Q23398 PaxDb:Q23398 EnsemblMetazoa:ZK1127.6.1
EnsemblMetazoa:ZK1127.6.2 GeneID:174149 KEGG:cel:CELE_ZK1127.6
UCSC:ZK1127.6.1 CTD:174149 WormBase:ZK1127.6 eggNOG:NOG283575
InParanoid:Q23398 OMA:HECKFIT NextBio:882739 Uniprot:Q23398
Length = 424
Score = 184 (69.8 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 39/136 (28%), Positives = 72/136 (52%)
Query: 480 EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAE 539
EAK F LL + ++ D RY A+ +R+ AFN+++G+ K++ +
Sbjct: 48 EAKEEFPKLLAECELNGRSSYSSFTSKFGKDPRYKAVERNRDREDAFNDFVGELHKKEKD 107
Query: 540 ERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLD 599
E+R K +K + + K+LEE LT ++WS E++ER+ AL+ R+ +F + +
Sbjct: 108 EKRAKKEKLKAAFVKLLEEQTGLTRKSKWSTTKKTLEDEERYIALDSSSTRESLFREFVA 167
Query: 600 ELKQKERAKAQEERKR 615
L + + +EE++R
Sbjct: 168 NLGDETASDIEEEQER 183
Score = 169 (64.5 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 37/118 (31%), Positives = 66/118 (55%)
Query: 542 RLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDEL 601
R + K+A++++ K+L E EL + +S + F D R+KA+ER RDR+D F+D + EL
Sbjct: 43 RKRAKEAKEEFPKLLAEC-ELNGRSSYSSFTSKFGKDPRYKAVERNRDREDAFNDFVGEL 101
Query: 602 KQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLE 659
+KE+ + + ++++ + K LE + ++W + LE +ER LD E
Sbjct: 102 HKKEKDEKRAKKEKLKAAFVKLLEEQTGLTRKSKWSTTKKTLEDEERYIALDSSSTRE 159
Score = 124 (48.7 bits), Expect = 0.00023, P = 0.00023
Identities = 38/147 (25%), Positives = 74/147 (50%)
Query: 465 EKTVEQEHFAYANKLEAKNAFKALLES--ANVGSDWTWDQALRAIINDRRYGALRTLGER 522
+KT+E E A L++ + ++L AN+G D T ++R A + R
Sbjct: 140 KKTLEDEERYIA--LDSSSTRESLFREFVANLG-DETASDIEEEQEREKRLAAQTAIANR 196
Query: 523 KTAFNEYLG-QKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERF 581
+ LG Q +++ E + K+ + D Y+ +L + ++ T ++ W +A + DER+
Sbjct: 197 QKEVEAELGNQLRERTKESEKQKMGEHEDTYRNLLIDLIKSTENS-WHEARRILRKDERY 255
Query: 582 KALER-ERDRKD-MFDDHLDELKQKER 606
+ ++ RK+ +FDDH+ L++K R
Sbjct: 256 ANCDMLDKTRKESLFDDHIKSLERKRR 282
>MGI|MGI:1917821 [details] [associations]
symbol:Tcerg1l "transcription elongation regulator 1-like"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
MGI:MGI:1917821 SUPFAM:SSF51045 eggNOG:NOG307751 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
GeneTree:ENSGT00530000062987 EMBL:AC127598 EMBL:AC127287
EMBL:AK017700 EMBL:BC048631 EMBL:BC107234 EMBL:BC107235
IPI:IPI00224840 IPI:IPI00404018 IPI:IPI00670719 RefSeq:NP_899112.2
UniGene:Mm.334297 ProteinModelPortal:Q3B807 SMR:Q3B807
PhosphoSite:Q3B807 PRIDE:Q3B807 Ensembl:ENSMUST00000160436
GeneID:70571 KEGG:mmu:70571 UCSC:uc009kez.1 UCSC:uc012fvn.1
CTD:256536 HOGENOM:HOG000170000 HOVERGEN:HBG108553
InParanoid:Q3B807 OMA:LVPIFPH OrthoDB:EOG47D9G3 ChiTaRS:TCERG1L
NextBio:331888 Bgee:Q3B807 CleanEx:MM_TCERG1L Genevestigator:Q3B807
Uniprot:Q3B807
Length = 590
Score = 170 (64.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 50/190 (26%), Positives = 100/190 (52%)
Query: 427 SNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALE-EKTVEQEHFAYANKLEAK-NA 484
S+ S+SD G+ D+ T+ R ++ G D + +K + LE +
Sbjct: 404 SDGSSSD-DGSEDQSVK--TKRNRTESCEGPGPEDTHQVDKGPQTPPPQILLPLEERVTH 460
Query: 485 FKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLK 544
F+ +L V + TW++ L I+ D RY L + ERK F +++ + K++ +ER+ K
Sbjct: 461 FRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNS-EERKQIFEQFVKTRIKEEYKERKSK 519
Query: 545 LKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQK 604
L A++++KK+LEES +++ T + + D+RF+ +++ +D++ F+ + LK++
Sbjct: 520 LLLAKEEFKKLLEES-KVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEHFFNQFILILKKR 578
Query: 605 ERAKAQEERK 614
++ RK
Sbjct: 579 DKENRLRLRK 588
Score = 51 (23.0 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 16/64 (25%), Positives = 24/64 (37%)
Query: 273 DWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFP 332
+W + P+ + ++ N S W P+E L EK Q S + T S P
Sbjct: 150 NWIDKRMPNYKIFFNNPFALDSTWMYPEESVLFHSH-EKTHFLANQVTPSLSRPTPASRP 208
Query: 333 SSVV 336
V
Sbjct: 209 LPTV 212
>RGD|620033 [details] [associations]
symbol:Wbp4 "WW domain binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA;ISO] [GO:0005886 "plasma membrane"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISO;ISS] [GO:0070064
"proline-rich region binding" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 RGD:620033 GO:GO:0005886 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0005681 GO:GO:0003676 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0045292 CTD:11193 eggNOG:NOG125287
HOGENOM:HOG000067962 HOVERGEN:HBG053152 KO:K13220 OrthoDB:EOG4R7VBT
OMA:HEEVDLE GeneTree:ENSGT00390000013956 EMBL:BC089052
IPI:IPI00554046 RefSeq:NP_446218.1 UniGene:Rn.144631
ProteinModelPortal:Q5HZF2 SMR:Q5HZF2 STRING:Q5HZF2
Ensembl:ENSRNOT00000015605 GeneID:114765 KEGG:rno:114765
UCSC:RGD:620033 InParanoid:Q5HZF2 NextBio:618853
Genevestigator:Q5HZF2 GermOnline:ENSRNOG00000011678 Uniprot:Q5HZF2
Length = 374
Score = 155 (59.6 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 30/78 (38%), Positives = 40/78 (51%)
Query: 224 KSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGR 283
K E + W E +ADG YY++ T S W+KP +++ A W E S DG
Sbjct: 118 KKKEASKGRWVEGVTADGHCYYYDLVTGASQWEKPEGFQGNLKKTAAKAIWVEGLSEDGY 177
Query: 284 KYYYNKVTKQSKWSLPDE 301
YYYN T +SKW PD+
Sbjct: 178 TYYYNTETGESKWEKPDD 195
Score = 45 (20.9 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 595 DDHLD-ELKQKERAKAQEERKRNIIEYRK 622
D H D + +QK+ +A E K+ II++++
Sbjct: 223 DSHSDSDDEQKKAGEASAETKKLIIKFKE 251
>MGI|MGI:109568 [details] [associations]
symbol:Wbp4 "WW domain binding protein 4" species:10090 "Mus
musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=ISO] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 EMBL:AF071184 MGI:MGI:109568 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 EMBL:CH466535 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0045292 CTD:11193 eggNOG:NOG125287 HOGENOM:HOG000067962
HOVERGEN:HBG053152 KO:K13220 OrthoDB:EOG4R7VBT OMA:HEEVDLE
EMBL:AK019160 EMBL:AK135215 EMBL:AK160559 EMBL:AK162009
EMBL:BC034851 IPI:IPI00117019 PIR:S64714 RefSeq:NP_061235.2
UniGene:Mm.476813 ProteinModelPortal:Q61048 SMR:Q61048
STRING:Q61048 PhosphoSite:Q61048 PaxDb:Q61048 PRIDE:Q61048
Ensembl:ENSMUST00000022601 GeneID:22380 KEGG:mmu:22380
GeneTree:ENSGT00390000013956 InParanoid:Q3TUU8 ChiTaRS:WBP4
NextBio:302741 Bgee:Q61048 CleanEx:MM_WBP4 Genevestigator:Q61048
GermOnline:ENSMUSG00000022023 Uniprot:Q61048
Length = 376
Score = 152 (58.6 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 29/78 (37%), Positives = 40/78 (51%)
Query: 224 KSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGR 283
K E + W E +ADG YY++ T S W+KP +++ A W E S DG
Sbjct: 120 KKKEASKGGWVEGVTADGHCYYYDLITGASQWEKPEGFQGNLKKTAAKAVWVEGLSEDGY 179
Query: 284 KYYYNKVTKQSKWSLPDE 301
YYYN T +SKW P++
Sbjct: 180 TYYYNTETGESKWEKPED 197
Score = 48 (22.0 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 595 DDHLD-ELKQKERAKAQEERKRNIIEYRK 622
D H D E +QK+ +A E K+ II++++
Sbjct: 225 DSHSDSEGEQKKAGEASTETKKLIIKFKE 253
>UNIPROTKB|F1PCW3 [details] [associations]
symbol:WBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 CTD:11193 KO:K13220
OMA:HEEVDLE GeneTree:ENSGT00390000013956 EMBL:AAEX03013176
RefSeq:XP_534136.2 Ensembl:ENSCAFT00000007742 GeneID:476935
KEGG:cfa:476935 Uniprot:F1PCW3
Length = 371
Score = 147 (56.8 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 36/119 (30%), Positives = 56/119 (47%)
Query: 222 QPKSAEGVQTD-----WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKE 276
QPK + + D W E +++G YY++ T S W++P +++ A T W E
Sbjct: 109 QPKEKKKKKKDPSKGRWVEGITSEGYHYYYDLITGASQWERPEGFQGNLKKTAAKTVWVE 168
Query: 277 FTSPDGRKYYYNKVTKQSKWSLPDEL-----KLAREQAEKASIKGTQSETSPNSQTSIS 330
S DG YYYN T +S+W PD+ L + + S+ GT E+ + S S
Sbjct: 169 GVSEDGYTYYYNTETGESRWEKPDDFIPHSGDLLSSKVNEKSV-GTLEESKSSDSHSDS 226
>UNIPROTKB|G4MWS5 [details] [associations]
symbol:MGG_08329 "DNA replication protein 4" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:CM001232 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SUPFAM:SSF81698 RefSeq:XP_003715736.1 ProteinModelPortal:G4MWS5
EnsemblFungi:MGG_08329T0 GeneID:2678469 KEGG:mgr:MGG_08329
Uniprot:G4MWS5
Length = 567
Score = 107 (42.7 bits), Expect = 9.8e-07, Sum P(4) = 9.8e-07
Identities = 31/130 (23%), Positives = 60/130 (46%)
Query: 480 EAKNAFKALLESANVGSDWTWDQALRA--IINDRRYGALRTLGERKTAFNEYLGQKKKQD 537
+A+ FK +L N+ +WD+ + + +D RY L T+ +RK + E+ + K
Sbjct: 296 DARGLFKDMLNDFNINPYSSWDKLIEEGKVFDDPRYTVLTTMKDRKDTWEEWSRDRIKIL 355
Query: 538 AEERRLKLKK-ARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK-ALERERDRKDMFD 595
E+R + KK R Y L E W + ++ + + A ++DR+ +
Sbjct: 356 KEQRAREEKKDPRIPYLAFLHEKAN--PKLYWPEFKRKYKKEGPMRDAGISDKDREKWYR 413
Query: 596 DHLDELKQKE 605
+H++ LK +
Sbjct: 414 EHINRLKMPQ 423
Score = 94 (38.1 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 36/130 (27%), Positives = 61/130 (46%)
Query: 536 QDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVT---MFENDERFKALERERDRKD 592
+ AE L + AR +K ML + + + W K + +F+ D R+ L +DRKD
Sbjct: 285 EGAEGAELSEEDARGLFKDMLND-FNINPYSSWDKLIEEGKVFD-DPRYTVLTTMKDRKD 342
Query: 593 MFDD-HLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQ--WRKVQDRL--EADE 647
+++ D +K + +A+EE+K I Y FL KAN + W + + + E
Sbjct: 343 TWEEWSRDRIKILKEQRAREEKKDPRIPYLAFLHE----KANPKLYWPEFKRKYKKEGPM 398
Query: 648 RCSRLDKMDR 657
R + + DR
Sbjct: 399 RDAGISDKDR 408
Score = 66 (28.3 bits), Expect = 9.8e-07, Sum P(4) = 9.8e-07
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 225 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 258
+A+ + W EH + G YY N T ST+ +P
Sbjct: 15 AAQPLPPGWTEHKAPTGHTYYHNAATGESTYKRP 48
Score = 62 (26.9 bits), Expect = 9.8e-07, Sum P(4) = 9.8e-07
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 282 GRKYYYNKVTKQSKWSLPDELKLAREQAEKASIK 315
GR++ YN S W +PD LK + + A I+
Sbjct: 140 GRRFAYNPEKNASYWRIPDRLKAGILELDTARIR 173
Score = 61 (26.5 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLP 299
W E +P G YY+N T +S + P
Sbjct: 23 WTEHKAPTGHTYYHNAATGESTYKRP 48
Score = 42 (19.8 bits), Expect = 9.8e-07, Sum P(4) = 9.8e-07
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 605 ERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLE 644
+R KA ++R+R + E ++ E D ++ R+ + LE
Sbjct: 507 KREKAMQDRERVLAEEKRRKER-DLARSKAALREQERELE 545
>ZFIN|ZDB-GENE-050522-342 [details] [associations]
symbol:zgc:112384 "zgc:112384" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000690 InterPro:IPR001202 InterPro:IPR003604
InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451 SMART:SM00456
ZFIN:ZDB-GENE-050522-342 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 HOVERGEN:HBG053152
KO:K13220 EMBL:BC095798 IPI:IPI00483634 RefSeq:NP_001018530.1
UniGene:Dr.78282 ProteinModelPortal:Q501Z8 GeneID:553723
KEGG:dre:553723 InParanoid:Q501Z8 NextBio:20880452 Uniprot:Q501Z8
Length = 412
Score = 146 (56.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 223 PKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKP--F--ELMTTI----ERADASTDW 274
P S+ Q W T+ADG YY+N T S W+KP F E +++ ++ + + W
Sbjct: 120 PSSSSRTQA-WVSGTTADGLLYYYNTLTAESQWEKPDGFVDECVSSTAGQTQQESSGSAW 178
Query: 275 KEFTSPDGRKYYYNKVTKQSKWSLPDEL 302
E SPDG YYYN + +S W P+EL
Sbjct: 179 MEAVSPDGFTYYYNTESGESSWEKPEEL 206
Score = 43 (20.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 437 ASDKVPPPVTEETRKDAVRG--EKVSDALEEKTVEQE 471
+SD V PP + RK+ ++ S A E T E +
Sbjct: 207 SSDDVSPPGVDSPRKEIESAALDRSSPAQPEHTAEDK 243
>UNIPROTKB|Q17QQ6 [details] [associations]
symbol:WBP4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000690
InterPro:IPR001202 InterPro:IPR003604 InterPro:IPR013085
Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50171 SMART:SM00451 SMART:SM00456 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0045292
CTD:11193 eggNOG:NOG125287 HOGENOM:HOG000067962 HOVERGEN:HBG053152
KO:K13220 OrthoDB:EOG4R7VBT OMA:HEEVDLE
GeneTree:ENSGT00390000013956 EMBL:DAAA02032752 EMBL:DAAA02032753
EMBL:BC118233 IPI:IPI00700299 RefSeq:NP_001068719.1
UniGene:Bt.21949 SMR:Q17QQ6 STRING:Q17QQ6
Ensembl:ENSBTAT00000022129 GeneID:506275 KEGG:bta:506275
InParanoid:Q17QQ6 NextBio:20867534 Uniprot:Q17QQ6
Length = 395
Score = 148 (57.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
W E +++G YY++ T S W+KP +++A T W E S DG YYYN T
Sbjct: 125 WVEGITSEGHHYYYDLITGASQWEKPEGFQGNLKKATGKTVWIEGLSEDGYTYYYNTETG 184
Query: 293 QSKWSLPDE 301
+S+W PD+
Sbjct: 185 ESRWEKPDD 193
Score = 39 (18.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 26/104 (25%), Positives = 44/104 (42%)
Query: 446 TE-ETRKDA-VRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQA 503
TE ET+K+ +G+ S EEK E+ ++ + KA + N +W Q
Sbjct: 263 TEPETQKEKNTQGKNSSGPSEEKPKEKNTQGKSSSGSNEEKPKAH-KKPNPYGEW---QE 318
Query: 504 LRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKK 547
++ + L E +A NEY+ + A E +L K+
Sbjct: 319 IKPEVESHEEVDL----ELPSAENEYVSTSEADAAGEPQLVFKE 358
>UNIPROTKB|B7Z4M2 [details] [associations]
symbol:WBP4 "cDNA FLJ52917, highly similar to WW
domain-binding protein 4" species:9606 "Homo sapiens" [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001202
InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 GO:GO:0008270 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL157877 HOVERGEN:HBG053152 UniGene:Hs.411300
HGNC:HGNC:12739 EMBL:AK297536 IPI:IPI00922785 SMR:B7Z4M2
STRING:B7Z4M2 Ensembl:ENST00000542082 UCSC:uc010tfd.2
Uniprot:B7Z4M2
Length = 355
Score = 138 (53.6 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 29/102 (28%), Positives = 46/102 (45%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
W E +++G YY++ + S W+KP +++ T W E S DG YYYN T
Sbjct: 107 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETG 166
Query: 293 QSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSS 334
+S+W PD+ + + T S++S S S
Sbjct: 167 ESRWEKPDDFIPHTSDLPSSKVNENSLGTLDESKSSDSHSDS 208
>UNIPROTKB|O75554 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0070064 "proline-rich region binding"
evidence=IPI] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0005886 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0005681 GO:GO:0003676 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0045292 EMBL:AL157877 eggNOG:COG5104
CTD:11193 HOGENOM:HOG000067962 HOVERGEN:HBG053152 KO:K13220
OrthoDB:EOG4R7VBT EMBL:AF071185 EMBL:BC104879 EMBL:BC108310
IPI:IPI00026957 RefSeq:NP_009118.1 UniGene:Hs.411300 PDB:2DK1
PDB:2JXW PDBsum:2DK1 PDBsum:2JXW ProteinModelPortal:O75554
SMR:O75554 MINT:MINT-127038 STRING:O75554 PhosphoSite:O75554
PaxDb:O75554 PRIDE:O75554 Ensembl:ENST00000379487 GeneID:11193
KEGG:hsa:11193 UCSC:uc001uxt.3 GeneCards:GC13P041635
HGNC:HGNC:12739 HPA:HPA038965 MIM:604981 neXtProt:NX_O75554
PharmGKB:PA37350 InParanoid:O75554 OMA:HEEVDLE PhylomeDB:O75554
EvolutionaryTrace:O75554 GenomeRNAi:11193 NextBio:42605
ArrayExpress:O75554 Bgee:O75554 CleanEx:HS_WBP4
Genevestigator:O75554 GermOnline:ENSG00000120688 Uniprot:O75554
Length = 376
Score = 138 (53.6 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 29/102 (28%), Positives = 46/102 (45%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
W E +++G YY++ + S W+KP +++ T W E S DG YYYN T
Sbjct: 128 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETG 187
Query: 293 QSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSS 334
+S+W PD+ + + T S++S S S
Sbjct: 188 ESRWEKPDDFIPHTSDLPSSKVNENSLGTLDESKSSDSHSDS 229
>UNIPROTKB|Q5F457 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0008380 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AJ851443 IPI:IPI00584023
RefSeq:NP_001025995.1 UniGene:Gga.7915 ProteinModelPortal:Q5F457
STRING:Q5F457 GeneID:418829 KEGG:gga:418829 CTD:11193
eggNOG:NOG125287 HOGENOM:HOG000067962 HOVERGEN:HBG053152
InParanoid:Q5F457 KO:K13220 OrthoDB:EOG4R7VBT NextBio:20821967
Uniprot:Q5F457
Length = 398
Score = 135 (52.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 25/69 (36%), Positives = 34/69 (49%)
Query: 232 DWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVT 291
+W + S +G YY+N +T S W+KP + + + W E S DG YYYN T
Sbjct: 139 EWVQGLSPEGYTYYYNTKTGESQWEKPKGFQGNSKTSHTGSVWVEGVSEDGHTYYYNTQT 198
Query: 292 KQSKWSLPD 300
S W PD
Sbjct: 199 GVSTWEKPD 207
>SGD|S000006356 [details] [associations]
symbol:URN1 "Putative protein of unknown function containing
WW and FF domains" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 SGD:S000006356
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
EMBL:BK006949 EMBL:U40829 Gene3D:2.20.70.10 SUPFAM:SSF51045
OrthoDB:EOG4XH37P Gene3D:1.10.10.440 InterPro:IPR002713
Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698 EMBL:AY692740 PIR:S69038
RefSeq:NP_015478.1 PDB:2JUC PDBsum:2JUC ProteinModelPortal:Q06525
SMR:Q06525 DIP:DIP-2017N IntAct:Q06525 MINT:MINT-401712
STRING:Q06525 PaxDb:Q06525 EnsemblFungi:YPR152C GeneID:856275
KEGG:sce:YPR152C CYGD:YPR152c eggNOG:NOG305481 HOGENOM:HOG000141866
OMA:EPTKYHY EvolutionaryTrace:Q06525 NextBio:981586
Genevestigator:Q06525 GermOnline:YPR152C Uniprot:Q06525
Length = 465
Score = 118 (46.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 273 DWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSP 323
+W+EF +P G+KYYYNK TKQS+W P+ LK A K +Q+E P
Sbjct: 4 EWQEFKTPAGKKYYYNKNTKQSRWEKPN-LKKGSNLESNA--KESQTERKP 51
Score = 64 (27.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 30/166 (18%), Positives = 66/166 (39%)
Query: 393 FPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNL-SNMSASDLVGASDKVPPPVTEETRK 451
F + D + ++S G+ + + E+ L S +S G D+ +E +
Sbjct: 136 FKRNQDEVERKDEISEEAGDV--KSPLQESHTGLVSGYGSSS--GEEDEEEDEEEDEENE 191
Query: 452 DAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDR 511
+ + + +S + ++ + ++ +N F L + + TW + I ND
Sbjct: 192 EQIVNQDISIIDDLNRIDTDD------IDERNIFFELFDRYKLDKFSTWSLQSKKIENDP 245
Query: 512 RYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLE 557
+ +R R++ F E+ G++ E + DD ++LE
Sbjct: 246 DFYKIRDDTVRESLFEEWCGERSGNATAEESDSEDNSEDD-SEVLE 290
Score = 62 (26.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 29/117 (24%), Positives = 47/117 (40%)
Query: 533 KKKQDAEERRLKLKKARDDYKKMLEES-VELTSSTRWSKAVTMFENDERFKALERERDRK 591
K+ QD ER+ ++ + D K L+ES L S S E DE E E + +
Sbjct: 137 KRNQDEVERKDEISEEAGDVKSPLQESHTGLVSGYGSSSG----EEDEEEDEEEDEENEE 192
Query: 592 DMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKAN--TQWRKVQDRLEAD 646
+ + + + R + +RNI F E D K + + W ++E D
Sbjct: 193 QIVNQDISIIDDLNRIDTDDIDERNI-----FFELFDRYKLDKFSTWSLQSKKIEND 244
Score = 47 (21.6 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 556 LEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQE 611
L + +L + WS END F + + R+ +F++ E + A A+E
Sbjct: 222 LFDRYKLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEWCGE--RSGNATAEE 275
>UNIPROTKB|F1NXG2 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IEA] [GO:0070064
"proline-rich region binding" evidence=IEA] InterPro:IPR000690
InterPro:IPR001202 InterPro:IPR003604 InterPro:IPR013085
Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50171 SMART:SM00451 SMART:SM00456 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0045292
IPI:IPI00584023 OMA:HEEVDLE GeneTree:ENSGT00390000013956
EMBL:AADN02005497 Ensembl:ENSGALT00000027397 Uniprot:F1NXG2
Length = 398
Score = 134 (52.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 25/69 (36%), Positives = 33/69 (47%)
Query: 232 DWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVT 291
+W + S +G YY+N +T S W+KP + + W E S DG YYYN T
Sbjct: 139 EWVQGLSPEGYTYYYNTKTGESQWEKPKGFQGNSKTSHTGAVWVEGVSEDGHTYYYNTQT 198
Query: 292 KQSKWSLPD 300
S W PD
Sbjct: 199 GVSTWEKPD 207
>MGI|MGI:1916903 [details] [associations]
symbol:Arhgap27 "Rho GTPase activating protein 27"
species:10090 "Mus musculus" [GO:0005096 "GTPase activator
activity" evidence=ISO] [GO:0005543 "phospholipid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005768 "endosome" evidence=ISO]
[GO:0006897 "endocytosis" evidence=IEA] [GO:0006898
"receptor-mediated endocytosis" evidence=ISO] [GO:0007165 "signal
transduction" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0017124 "SH3 domain binding" evidence=ISO] [GO:0030675 "Rac
GTPase activator activity" evidence=ISO] [GO:0032855 "positive
regulation of Rac GTPase activity" evidence=ISO] [GO:0043089
"positive regulation of Cdc42 GTPase activity" evidence=ISO]
Pfam:PF00169 InterPro:IPR000198 InterPro:IPR001202
InterPro:IPR001452 InterPro:IPR001849 InterPro:IPR008936
Pfam:PF00397 Pfam:PF00620 PROSITE:PS01159 PROSITE:PS50002
PROSITE:PS50003 PROSITE:PS50020 PROSITE:PS50238 SMART:SM00233
SMART:SM00324 SMART:SM00326 SMART:SM00456 MGI:MGI:1916903
GO:GO:0006898 GO:GO:0005737 GO:GO:0007165 GO:GO:0016020
Gene3D:1.10.555.10 SUPFAM:SSF48350 GO:GO:0005543 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0017124 GO:GO:0005622 SUPFAM:SSF50044
GeneTree:ENSGT00700000104029 GO:GO:0030675 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0043089 eggNOG:NOG279563 InterPro:IPR015767
PANTHER:PTHR23181 EMBL:AL662804 EMBL:AL772325 HOGENOM:HOG000294167
HOVERGEN:HBG005328 CTD:201176 OMA:KGYIRDQ OrthoDB:EOG4X3H0P
EMBL:AK046763 EMBL:BC096671 IPI:IPI00648511 IPI:IPI00886308
RefSeq:NP_001192165.1 RefSeq:NP_598476.2 UniGene:Mm.259113
UniGene:Mm.397197 UniGene:Mm.399816 ProteinModelPortal:A2AB59
SMR:A2AB59 PhosphoSite:A2AB59 PaxDb:A2AB59 PRIDE:A2AB59
Ensembl:ENSMUST00000041385 Ensembl:ENSMUST00000107024 GeneID:544817
KEGG:mmu:544817 UCSC:uc007lud.1 InParanoid:A2AB59 ChiTaRS:ARHGAP27
NextBio:412048 Bgee:A2AB59 CleanEx:MM_ARHGAP27
Genevestigator:A2AB59 Uniprot:A2AB59
Length = 869
Score = 130 (50.8 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 33/107 (30%), Positives = 54/107 (50%)
Query: 233 WKEHT-SADGRRYYFNKRTRVSTWDKPFELM--TT---IERADAS------TDWKEFTSP 280
W+ HT + GR YY+N T V+TW+ PFE TT RA T+W ++
Sbjct: 252 WETHTDTGTGRPYYYNPDTGVTTWESPFETPEGTTSPATSRASVGSGESLETEWGQYWDE 311
Query: 281 DGRK-YYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQ 326
+ R+ ++YN +T ++ W E +L + E+ ++ + S SP Q
Sbjct: 312 ESRRVFFYNPLTGETAWEDETE-ELEEDHQEQLEMQPSLSPRSPGQQ 357
Score = 56 (24.8 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 10 YSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHY 51
Y AQ + P +G DP P +P Q RP VP P Y
Sbjct: 58 YLPAQYVRELPALG--DPAPAPQPSVPQQ-RPAVPEPLAYDY 96
>FB|FBgn0011606 [details] [associations]
symbol:Klp3A "Kinesin-like protein at 3A" species:7227
"Drosophila melanogaster" [GO:0016321 "female meiosis chromosome
segregation" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0005819 "spindle" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000910 "cytokinesis"
evidence=IMP;TAS] [GO:0007140 "male meiosis" evidence=IMP;TAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005818 "aster"
evidence=IDA] [GO:0007338 "single fertilization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0003777 "microtubule motor activity" evidence=ISS] [GO:0007018
"microtubule-based movement" evidence=ISS] [GO:0005871 "kinesin
complex" evidence=ISS;NAS] [GO:0008017 "microtubule binding"
evidence=IDA] [GO:0007344 "pronuclear fusion" evidence=TAS]
[GO:0008574 "plus-end-directed microtubule motor activity"
evidence=NAS] [GO:0051233 "spindle midzone" evidence=IDA]
[GO:0051231 "spindle elongation" evidence=IMP] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0007088 "regulation of
mitosis" evidence=IMP] [GO:0030496 "midbody" evidence=IDA]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0007067 "mitosis" evidence=IMP]
InterPro:IPR001752 InterPro:IPR019821 Pfam:PF00225 PRINTS:PR00380
PROSITE:PS00411 PROSITE:PS50067 SMART:SM00129 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0007088 GO:GO:0005871
GO:GO:0007067 GO:GO:0007052 EMBL:AE014298 GO:GO:0051233
GO:GO:0000910 GO:GO:0007140 GO:GO:0030496 GO:GO:0008017
GO:GO:0005874 GO:GO:0005818 GO:GO:0007018 Gene3D:3.40.850.10
GO:GO:0007131 GO:GO:0016321 GO:GO:0007344
GeneTree:ENSGT00680000099754 GO:GO:0008574 EMBL:AL138972
HSSP:P33173 KO:K10395 GO:GO:0051231 EMBL:AF132186
RefSeq:NP_525053.1 UniGene:Dm.1693 SMR:Q9XZ29 MINT:MINT-283250
STRING:Q9XZ29 EnsemblMetazoa:FBtr0070448 GeneID:31240
KEGG:dme:Dmel_CG8590 UCSC:CG8590-RA CTD:31240 FlyBase:FBgn0011606
InParanoid:Q9XZ29 OMA:ICIPGLT OrthoDB:EOG41RN8W GenomeRNAi:31240
NextBio:772604 Uniprot:Q9XZ29
Length = 1212
Score = 134 (52.2 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 56/238 (23%), Positives = 115/238 (48%)
Query: 388 ANADGF-PKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMS-ASDLVGASDKVPPPV 445
A D + + ++ I +ID S+ + + D V +L SD A+++
Sbjct: 765 AKTDSWVDRELEIILSLIDAEHSLEQLMEDRAVINNHYHLLQQEKTSDPAEAAEQARILA 824
Query: 446 TEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALR 505
+ E + +R ++SD L++K + + L ++L ES V Q L+
Sbjct: 825 SLEEELE-MRNAQISD-LQQKVCPTDLDSRIRSLA--EGVQSLGESRTVSK-----QLLK 875
Query: 506 AIINDRRYGALRTLGERKTAFNEYLGQ----KKKQDAEERRLKLKKARDDYKKML----- 556
++ RR A +L E++T +E Q ++++DA +RL+L +++ + ++ML
Sbjct: 876 TLVQQRRLQA-SSLNEQRTTLDELRAQLLDAQQQEDAASKRLRLLQSQHE-EQMLAQQRA 933
Query: 557 -EESVEL---TSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQ 610
EE V + T++ RW++A + E+ +R + LE ++ LD+L+ K ++K++
Sbjct: 934 YEEKVSVLIRTANQRWAEARSPAEDQQRNQILEELLSSREALQQELDKLRAKNKSKSK 991
>UNIPROTKB|C9JVK6 [details] [associations]
symbol:WAC "WW domain-containing adapter protein with
coiled-coil" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 GO:GO:0005681
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL161936 EMBL:AL358234
HGNC:HGNC:17327 ChiTaRS:WAC HOGENOM:HOG000169503 IPI:IPI00925490
ProteinModelPortal:C9JVK6 SMR:C9JVK6 STRING:C9JVK6
Ensembl:ENST00000442148 ArrayExpress:C9JVK6 Bgee:C9JVK6
Uniprot:C9JVK6
Length = 173
Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 232 DWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKY 285
DW EH S+ G++YY+N RT VS W+KP E + +R + + P R Y
Sbjct: 89 DWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKMAVNSFPKDRDY 142
>RGD|735202 [details] [associations]
symbol:Arhgap27 "Rho GTPase activating protein 27" species:10116
"Rattus norvegicus" [GO:0005096 "GTPase activator activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005543 "phospholipid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA;IMP] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0017124 "SH3 domain
binding" evidence=IDA] [GO:0030675 "Rac GTPase activator activity"
evidence=IDA] [GO:0032855 "positive regulation of Rac GTPase
activity" evidence=IDA] [GO:0043089 "positive regulation of Cdc42
GTPase activity" evidence=IDA] Pfam:PF00169 InterPro:IPR000198
InterPro:IPR001202 InterPro:IPR001452 InterPro:IPR001849
InterPro:IPR008936 Pfam:PF00397 Pfam:PF00620 PROSITE:PS01159
PROSITE:PS50002 PROSITE:PS50003 PROSITE:PS50020 PROSITE:PS50238
SMART:SM00233 SMART:SM00324 SMART:SM00326 SMART:SM00456
EMBL:AY394725 RGD:735202 GO:GO:0006898 GO:GO:0005737 GO:GO:0007165
GO:GO:0016020 Gene3D:1.10.555.10 SUPFAM:SSF48350 GO:GO:0005543
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0017124 GO:GO:0005622
SUPFAM:SSF50044 GO:GO:0030675 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0043089 eggNOG:NOG279563 InterPro:IPR015767 PANTHER:PTHR23181
HOGENOM:HOG000294167 HOVERGEN:HBG005328 CTD:201176
OrthoDB:EOG4X3H0P IPI:IPI00400617 RefSeq:NP_942054.1
UniGene:Rn.17895 HSSP:Q8C863 ProteinModelPortal:Q6TLK4
STRING:Q6TLK4 PhosphoSite:Q6TLK4 PRIDE:Q6TLK4 GeneID:303583
KEGG:rno:303583 InParanoid:Q6TLK4 NextBio:651663
ArrayExpress:Q6TLK4 Genevestigator:Q6TLK4 Uniprot:Q6TLK4
Length = 869
Score = 133 (51.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 34/107 (31%), Positives = 53/107 (49%)
Query: 233 WKEHTSAD-GRRYYFNKRTRVSTWDKPFEL-----MTTIERADAS------TDWKEFTSP 280
W+ HT A GR YY+N T V+TW+ PFE T RA T+W ++
Sbjct: 252 WETHTDAGTGRPYYYNPDTGVTTWESPFEAPEGATSPTTSRASVGSGESLETEWGQYWDE 311
Query: 281 D-GRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQ 326
+ GR ++YN +T ++ W E +L + E+ ++ + S SP Q
Sbjct: 312 ESGRVFFYNPLTGETVWEDETE-ELEDDPEEQLEMQPSLSPRSPGQQ 357
Score = 45 (20.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 10 YSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHY 51
Y AQ + P +G DP P + Q RP VP P Y
Sbjct: 58 YLPAQYVRELPALG--DPVPAPQPSVLQQ-RPTVPEPLAYDY 96
>UNIPROTKB|Q6TLK4 [details] [associations]
symbol:Arhgap27 "Rho GTPase-activating protein 27"
species:10116 "Rattus norvegicus" [GO:0005543 "phospholipid
binding" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] Pfam:PF00169 InterPro:IPR000198 InterPro:IPR001202
InterPro:IPR001452 InterPro:IPR001849 InterPro:IPR008936
Pfam:PF00397 Pfam:PF00620 PROSITE:PS01159 PROSITE:PS50002
PROSITE:PS50003 PROSITE:PS50020 PROSITE:PS50238 SMART:SM00233
SMART:SM00324 SMART:SM00326 SMART:SM00456 EMBL:AY394725 RGD:735202
GO:GO:0006898 GO:GO:0005737 GO:GO:0007165 GO:GO:0016020
Gene3D:1.10.555.10 SUPFAM:SSF48350 GO:GO:0005543 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0017124 GO:GO:0005622 SUPFAM:SSF50044
GO:GO:0030675 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0043089
eggNOG:NOG279563 InterPro:IPR015767 PANTHER:PTHR23181
HOGENOM:HOG000294167 HOVERGEN:HBG005328 CTD:201176
OrthoDB:EOG4X3H0P IPI:IPI00400617 RefSeq:NP_942054.1
UniGene:Rn.17895 HSSP:Q8C863 ProteinModelPortal:Q6TLK4
STRING:Q6TLK4 PhosphoSite:Q6TLK4 PRIDE:Q6TLK4 GeneID:303583
KEGG:rno:303583 InParanoid:Q6TLK4 NextBio:651663
ArrayExpress:Q6TLK4 Genevestigator:Q6TLK4 Uniprot:Q6TLK4
Length = 869
Score = 133 (51.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 34/107 (31%), Positives = 53/107 (49%)
Query: 233 WKEHTSAD-GRRYYFNKRTRVSTWDKPFEL-----MTTIERADAS------TDWKEFTSP 280
W+ HT A GR YY+N T V+TW+ PFE T RA T+W ++
Sbjct: 252 WETHTDAGTGRPYYYNPDTGVTTWESPFEAPEGATSPTTSRASVGSGESLETEWGQYWDE 311
Query: 281 D-GRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQ 326
+ GR ++YN +T ++ W E +L + E+ ++ + S SP Q
Sbjct: 312 ESGRVFFYNPLTGETVWEDETE-ELEDDPEEQLEMQPSLSPRSPGQQ 357
Score = 45 (20.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 10 YSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHY 51
Y AQ + P +G DP P + Q RP VP P Y
Sbjct: 58 YLPAQYVRELPALG--DPVPAPQPSVLQQ-RPTVPEPLAYDY 96
>GENEDB_PFALCIPARUM|PF11_0486 [details] [associations]
symbol:PF11_0486 "MAEBL, putative" species:5833
"Plasmodium falciparum" [GO:0016020 "membrane" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0020007 "apical
complex" evidence=TAS] InterPro:IPR003298 Pfam:PF02430
GO:GO:0009405 GO:GO:0016020 EMBL:AE014186 HSSP:P04268 GO:GO:0020007
RefSeq:XP_001348153.1 ProteinModelPortal:Q8IHP3
EnsemblProtists:PF11_0486:mRNA GeneID:811029 KEGG:pfa:PF11_0486
EuPathDB:PlasmoDB:PF3D7_1147800.1 HOGENOM:HOG000065870
ProtClustDB:PTZ00121 InterPro:IPR021620 Pfam:PF11556 Uniprot:Q8IHP3
Length = 2055
Score = 133 (51.9 bits), Expect = 0.00018, P = 0.00018
Identities = 80/341 (23%), Positives = 140/341 (41%)
Query: 447 EETRKDAV-RGEKV-SDALEEKTVEQE-HFAYANKLE-AKNAFKALLESANVGSDWTWDQ 502
+E R +AV R E+V D E K E+E + K E A+ A A ++A +
Sbjct: 1205 DEKRIEAVKRAEEVRKDEEEAKRAEKERNNEEIRKFEEARMAHFARRQAAIKAEEKRKAD 1264
Query: 503 ALRAIINDRRYGALRTLGERKTA--FNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESV 560
L+ ++ L+ E+K A + +KKK D +++ + KK D+ KK EE
Sbjct: 1265 ELKKAEEKKKADELKKSEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKKAEEKK 1324
Query: 561 ---ELTSSTRWSKAVTMFENDERFKA--LERERDRK--DMFDDHLDELKQKERAKAQEER 613
E+ + KA + +++E+ KA L++ ++K D +E K+ + K + E
Sbjct: 1325 KADEVKKAEEKKKADELKKSEEKKKADELKKSEEKKKADELKKKAEEKKKADELKKKAEE 1384
Query: 614 KRNIIEYRKFLESCDFIKANTQWRKVQDRLEADE---RCSRLDKMDRLEIFXXXXXXXXX 670
K+ E +K E KA+ +K +++ +ADE + K D L+
Sbjct: 1385 KKKADELKKKAEEKK--KADELKKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKAEN 1442
Query: 671 XXXXXXXXXXXXXSKT--ERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMA 728
K E+K DE +K E L K + ++K A
Sbjct: 1443 LKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKK-----A 1497
Query: 729 VASNTSGSTPKDLFEDVVEELQKQFQEDKT-RIKDAVKLRK 768
+ K + +EL+K ++ K +K A +L+K
Sbjct: 1498 EEKKKADELKKAEEKKKADELKKAEEKKKADELKKAEELKK 1538
>UNIPROTKB|Q8IHP3 [details] [associations]
symbol:PF11_0486 "MAEBL, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0008150 "biological_process"
evidence=ND] [GO:0020007 "apical complex" evidence=TAS]
InterPro:IPR003298 Pfam:PF02430 GO:GO:0009405 GO:GO:0016020
EMBL:AE014186 HSSP:P04268 GO:GO:0020007 RefSeq:XP_001348153.1
ProteinModelPortal:Q8IHP3 EnsemblProtists:PF11_0486:mRNA
GeneID:811029 KEGG:pfa:PF11_0486 EuPathDB:PlasmoDB:PF3D7_1147800.1
HOGENOM:HOG000065870 ProtClustDB:PTZ00121 InterPro:IPR021620
Pfam:PF11556 Uniprot:Q8IHP3
Length = 2055
Score = 133 (51.9 bits), Expect = 0.00018, P = 0.00018
Identities = 80/341 (23%), Positives = 140/341 (41%)
Query: 447 EETRKDAV-RGEKV-SDALEEKTVEQE-HFAYANKLE-AKNAFKALLESANVGSDWTWDQ 502
+E R +AV R E+V D E K E+E + K E A+ A A ++A +
Sbjct: 1205 DEKRIEAVKRAEEVRKDEEEAKRAEKERNNEEIRKFEEARMAHFARRQAAIKAEEKRKAD 1264
Query: 503 ALRAIINDRRYGALRTLGERKTA--FNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESV 560
L+ ++ L+ E+K A + +KKK D +++ + KK D+ KK EE
Sbjct: 1265 ELKKAEEKKKADELKKSEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKKAEEKK 1324
Query: 561 ---ELTSSTRWSKAVTMFENDERFKA--LERERDRK--DMFDDHLDELKQKERAKAQEER 613
E+ + KA + +++E+ KA L++ ++K D +E K+ + K + E
Sbjct: 1325 KADEVKKAEEKKKADELKKSEEKKKADELKKSEEKKKADELKKKAEEKKKADELKKKAEE 1384
Query: 614 KRNIIEYRKFLESCDFIKANTQWRKVQDRLEADE---RCSRLDKMDRLEIFXXXXXXXXX 670
K+ E +K E KA+ +K +++ +ADE + K D L+
Sbjct: 1385 KKKADELKKKAEEKK--KADELKKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKAEN 1442
Query: 671 XXXXXXXXXXXXXSKT--ERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMA 728
K E+K DE +K E L K + ++K A
Sbjct: 1443 LKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKK-----A 1497
Query: 729 VASNTSGSTPKDLFEDVVEELQKQFQEDKT-RIKDAVKLRK 768
+ K + +EL+K ++ K +K A +L+K
Sbjct: 1498 EEKKKADELKKAEEKKKADELKKAEEKKKADELKKAEELKK 1538
>FB|FBgn0037255 [details] [associations]
symbol:Fip1 species:7227 "Drosophila melanogaster"
[GO:0005515 "protein binding" evidence=IPI] [GO:0006398 "histone
mRNA 3'-end processing" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] EMBL:AE014297 GO:GO:0005634 GO:GO:0006398
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SUPFAM:SSF81698
eggNOG:COG5213 KO:K14405 InterPro:IPR007854 Pfam:PF05182
GeneTree:ENSGT00530000062987 RefSeq:NP_649476.1 UniGene:Dm.1059
ProteinModelPortal:Q9VN31 IntAct:Q9VN31 MINT:MINT-1547159
STRING:Q9VN31 PaxDb:Q9VN31 PRIDE:Q9VN31 EnsemblMetazoa:FBtr0078928
GeneID:40569 KEGG:dme:Dmel_CG1078 UCSC:CG1078-RA CTD:40569
FlyBase:FBgn0037255 InParanoid:Q9VN31 OMA:FEGAGTI OrthoDB:EOG4G4F64
PhylomeDB:Q9VN31 GenomeRNAi:40569 NextBio:819441
ArrayExpress:Q9VN31 Bgee:Q9VN31 Uniprot:Q9VN31
Length = 701
Score = 123 (48.4 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 30/99 (30%), Positives = 60/99 (60%)
Query: 519 LGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFEND 578
+G+R A+++ +++++ +E+ LK + R D+ ML E ++ TRW FE D
Sbjct: 505 MGDRG-AYDD--DRERRRREKEKLLKKDQLRKDFLDMLRERHDIERHTRWYDIKKKFEAD 561
Query: 579 ERFKALERERDRKDMFDDHLDELKQKERAKAQ-EERKRN 616
R++AL+ R++ F+D+L LK+++R + +ER+R+
Sbjct: 562 PRYRALDSSY-REEYFEDYLHLLKEEKRKERDLKERERH 599
Score = 55 (24.4 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 16 PHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPS 75
P PP S+ PP+ GPP P+ R ++P P +P + G G++M P
Sbjct: 440 PGMPPPGMSVPPPQMGGPP-PN-LRGIMP---PNMRMP---PNMNMGPPPGMMMGGNAPP 491
Query: 76 QP---LQPPFR 83
Q + PP R
Sbjct: 492 QMRMGMAPPQR 502
Score = 37 (18.1 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 739 KDLFEDVVEELQKQFQEDKTRIKDAVKLRK 768
KD +D ++ +K +DK + KD R+
Sbjct: 618 KDKDKDKEKDKEKDKDKDKEKEKDKESSRR 647
>UNIPROTKB|C9JD58 [details] [associations]
symbol:WAC "WW domain-containing adapter protein with
coiled-coil" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 GO:GO:0005681
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL161936 EMBL:AL358234
HGNC:HGNC:17327 ChiTaRS:WAC IPI:IPI00924579
ProteinModelPortal:C9JD58 SMR:C9JD58 STRING:C9JD58
Ensembl:ENST00000420266 HOGENOM:HOG000169503 ArrayExpress:C9JD58
Bgee:C9JD58 Uniprot:C9JD58
Length = 204
Score = 115 (45.5 bits), Expect = 0.00040, P = 0.00040
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 232 DWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKY 285
DW EH S+ G++YY+N RT VS W+KP E + +R + + P R Y
Sbjct: 89 DWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKMAVNSFPKDRDY 142
>UNIPROTKB|F1PR59 [details] [associations]
symbol:ARHGAP12 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0007165 "signal transduction"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005543
"phospholipid binding" evidence=IEA] Pfam:PF00018 Pfam:PF00169
InterPro:IPR000198 InterPro:IPR001202 InterPro:IPR001452
InterPro:IPR001849 InterPro:IPR008936 Pfam:PF00397 Pfam:PF00620
PROSITE:PS50002 PROSITE:PS50003 PROSITE:PS50020 PROSITE:PS50238
SMART:SM00233 SMART:SM00324 SMART:SM00326 SMART:SM00456
GO:GO:0007165 Gene3D:1.10.555.10 SUPFAM:SSF48350 GO:GO:0005543
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0005622 SUPFAM:SSF50044
GeneTree:ENSGT00700000104029 Gene3D:2.20.70.10 SUPFAM:SSF51045
InterPro:IPR015767 PANTHER:PTHR23181 CTD:94134 EMBL:AAEX03001219
RefSeq:XP_859716.1 Ensembl:ENSCAFT00000006499 GeneID:487088
KEGG:cfa:487088 Uniprot:F1PR59
Length = 791
Score = 134 (52.2 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKP-FELMTTIERADAST----DWKEFTSPDGR 283
+ +W+ H + GR YY+N+ T+ TW P + T I + D + +W + GR
Sbjct: 264 INGEWETHKDSSGRCYYYNRGTQERTWKPPRWTRDTNISKGDFQSPGDQEWLKHVDDQGR 323
Query: 284 KYYYNKVTKQSKWSLPDELKLAREQAE 310
+YYY+ +S+W LP +++Q E
Sbjct: 324 QYYYSADGSRSEWELPKYNASSQQQRE 350
Score = 39 (18.8 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 726 YMAVASNTSGSTPKDLFEDVVEELQKQ---FQEDKTRI-KDAVKLRKITLSSTWTFEDFK 781
+ V S+T + + E + EE+ + + DK + KD KLR + +SS + E K
Sbjct: 511 WFKVLSSTINNQTVETDEAIEEEIPESPGIEKHDKEKDHKDPKKLRPMKVSSIDSSEQKK 570
>UNIPROTKB|B7Z6T0 [details] [associations]
symbol:ARHGAP27 "Rho GTPase-activating protein 27"
species:9606 "Homo sapiens" [GO:0005543 "phospholipid binding"
evidence=IEA] Pfam:PF00169 InterPro:IPR001202 InterPro:IPR001849
Pfam:PF00397 PROSITE:PS50003 PROSITE:PS50020 SMART:SM00233
SMART:SM00456 GO:GO:0005543 Gene3D:2.30.29.30 InterPro:IPR011993
Gene3D:2.20.70.10 SUPFAM:SSF51045 eggNOG:NOG279563
InterPro:IPR015767 PANTHER:PTHR23181 EMBL:AC217778 EMBL:AC003070
UniGene:Hs.205326 OrthoDB:EOG4X3H0P EMBL:AK300880 IPI:IPI01011796
SMR:B7Z6T0 STRING:B7Z6T0 Ensembl:ENST00000547264 UCSC:uc010wjl.1
HOVERGEN:HBG106190 Uniprot:B7Z6T0
Length = 399
Score = 121 (47.7 bits), Expect = 0.00044, P = 0.00044
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 233 WKEHTSAD-GRRYYFNKRTRVSTWDKPFELM-------TTIERADA----STDWKEFTSP 280
W+ HT A GR YY+N T V+TW+ PFE T+ D+ T+W ++
Sbjct: 52 WETHTDAGTGRPYYYNPDTGVTTWESPFEAAEGAASPATSPASVDSHVSLETEWGQYWDE 111
Query: 281 DGRK-YYYNKVTKQSKWSLPDELKLAREQAEKASIK-GTQSETSPNSQTSISFPSSVVKA 338
+ R+ ++YN +T ++ W E + E + + G+ + P + + +P S+
Sbjct: 112 ESRRVFFYNPLTGETAWEDEAENEPEEELEMQPGLSPGSPGDPRPPTPET-DYPESLTSY 170
Query: 339 P 339
P
Sbjct: 171 P 171
>UNIPROTKB|J3QTA0 [details] [associations]
symbol:WAC "WW domain-containing adapter protein with
coiled-coil" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL161936 EMBL:AL358234 HGNC:HGNC:17327
ChiTaRS:WAC ProteinModelPortal:J3QTA0 Ensembl:ENST00000414108
Uniprot:J3QTA0
Length = 233
Score = 115 (45.5 bits), Expect = 0.00064, P = 0.00064
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 232 DWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKY 285
DW EH S+ G++YY+N RT VS W+KP E + +R + + P R Y
Sbjct: 89 DWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKMAVNSFPKDRDY 142
>UNIPROTKB|E9PNT2 [details] [associations]
symbol:ARHGAP27 "Rho GTPase-activating protein 27"
species:9606 "Homo sapiens" [GO:0005543 "phospholipid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0007165
"signal transduction" evidence=IEA] [GO:0005096 "GTPase activator
activity" evidence=IEA] Pfam:PF00169 InterPro:IPR000198
InterPro:IPR001202 InterPro:IPR001849 InterPro:IPR008936
Pfam:PF00397 Pfam:PF00620 PROSITE:PS50003 PROSITE:PS50020
PROSITE:PS50238 SMART:SM00233 SMART:SM00324 SMART:SM00456
GO:GO:0007165 Gene3D:1.10.555.10 SUPFAM:SSF48350 GO:GO:0005543
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0005622
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR015767
PANTHER:PTHR23181 EMBL:AC003070 EMBL:AC091132 HGNC:HGNC:31813
IPI:IPI01011796 ProteinModelPortal:E9PNT2 SMR:E9PNT2
Ensembl:ENST00000532038 ArrayExpress:E9PNT2 Bgee:E9PNT2
Uniprot:E9PNT2
Length = 667
Score = 121 (47.7 bits), Expect = 0.00095, P = 0.00095
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 233 WKEHTSAD-GRRYYFNKRTRVSTWDKPFELM-------TTIERADA----STDWKEFTSP 280
W+ HT A GR YY+N T V+TW+ PFE T+ D+ T+W ++
Sbjct: 52 WETHTDAGTGRPYYYNPDTGVTTWESPFEAAEGAASPATSPASVDSHVSLETEWGQYWDE 111
Query: 281 DGRK-YYYNKVTKQSKWSLPDELKLAREQAEKASIK-GTQSETSPNSQTSISFPSSVVKA 338
+ R+ ++YN +T ++ W E + E + + G+ + P + + +P S+
Sbjct: 112 ESRRVFFYNPLTGETAWEDEAENEPEEELEMQPGLSPGSPGDPRPPTPET-DYPESLTSY 170
Query: 339 P 339
P
Sbjct: 171 P 171
>ZFIN|ZDB-GENE-030131-2624 [details] [associations]
symbol:waca "WW domain containing adaptor with
coiled-coil a" species:7955 "Danio rerio" [GO:0000993 "RNA
polymerase II core binding" evidence=ISS] [GO:0006974 "response to
DNA damage stimulus" evidence=ISS] [GO:0010390 "histone
monoubiquitination" evidence=ISS] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS] [GO:0071894 "histone
H2B conserved C-terminal lysine ubiquitination" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 ZFIN:ZDB-GENE-030131-2624
GO:GO:0005634 GO:GO:0045893 GO:GO:0006351 GO:GO:0003682
GO:GO:0006974 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0000075
GO:GO:0010390 GO:GO:0071894 GO:GO:0000993 HSSP:Q61051 EMBL:AY576994
EMBL:BC048888 IPI:IPI00638645 RefSeq:NP_955954.1 UniGene:Dr.78333
ProteinModelPortal:Q7ZUK7 PRIDE:Q7ZUK7 GeneID:323904
KEGG:dre:323904 CTD:323904 eggNOG:NOG248337 HOGENOM:HOG000013038
HOVERGEN:HBG057585 InParanoid:Q7ZUK7 OrthoDB:EOG42RD73
NextBio:20808481 ArrayExpress:Q7ZUK7 Uniprot:Q7ZUK7
Length = 558
Score = 120 (47.3 bits), Expect = 0.00096, P = 0.00096
Identities = 35/119 (29%), Positives = 57/119 (47%)
Query: 232 DWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTS--PDGRKYYYN- 288
DW EH S+ G++YY+N RT VS W+KP E + +R +T + P R Y
Sbjct: 125 DWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEATKTAAVVNSFPKDRDYRREA 184
Query: 289 -KVTKQS----KWSLPDELKLA-REQAEKASIKGTQSETSPNSQTSISFP-SSVVKAPS 340
+ T S K S+ E + + A++ G S +S + + P S V+++P+
Sbjct: 185 MQATPASYSSTKSSIATEKPSSLTPSSSSAAVSGLDVPNSASSASGSTVPVSPVMQSPA 243
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.128 0.371 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 873 732 0.00087 121 3 11 23 0.46 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 55
No. of states in DFA: 619 (66 KB)
Total size of DFA: 374 KB (2182 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 79.25u 0.13s 79.38t Elapsed: 00:00:03
Total cpu time: 79.29u 0.13s 79.42t Elapsed: 00:00:03
Start: Thu May 9 19:23:59 2013 End: Thu May 9 19:24:02 2013