BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002862
(873 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B
PE=1 SV=1
Length = 992
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/853 (49%), Positives = 551/853 (64%), Gaps = 67/853 (7%)
Query: 4 MANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGG 63
MANN Y G Q P Q P S+D PRGF PP+ Q+ P + APQ + ++SQ+FQ G
Sbjct: 1 MANNHQYPGIQ-PFQHPNASSIDLPRGFAPPMNFQFLPTIQAPQSEQVARLSSQNFQCVG 59
Query: 64 QGGLIMNAGFPSQPLQPPFRPLMHPLPARP---GPPAPSHVP-PPPQVMSLPNAQPSNHI 119
+GG +++ G+P Q P MH RP HVP PP ++S PN ++
Sbjct: 60 RGGTVLSIGYPPQSYAPQLLQSMHHSHERPSQLNQVQVQHVPLGPPTLISQPNVSIAS-- 117
Query: 120 PPSSLPRPNVQALSSYPPGLGG----LGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMS 175
+SL +P VQ PG GG P A SY S PQ+ G
Sbjct: 118 -GTSLHQPYVQTPDIGMPGFGGPRALFSYPSATSY---EGSRVPPQVTG----------- 162
Query: 176 QMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKE 235
PSI + Q S+ ++ S+ + PT EQ A L+P ++ TDW E
Sbjct: 163 ----PSIHSQAQQRASIIHTSAESSIMNPTFEQPKAAF-------LKPLPSQKALTDWVE 211
Query: 236 HTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSK 295
HTSADGR+Y+FNKRT+ STW+KP ELMT ERADA TDWKE +SPDGRKYYYNK+TKQS
Sbjct: 212 HTSADGRKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPDGRKYYYNKITKQST 271
Query: 296 WSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSS 355
W++P+E+K+ REQAE AS++G P+++ I + ++ +++ + + + S+
Sbjct: 272 WTMPEEMKIVREQAEIASVQG------PHAEGIIDASEVLTRSDTASTAAPTGLPSQTST 325
Query: 356 PVAVVPIIAASE-TQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAV 414
V + S+ QPA SVP +S S V N D + D + + D S + G +V
Sbjct: 326 SEGVEKLTLTSDLKQPA--SVPGSS-----SPVENVDRVQMSADETSQLCDTSETDGLSV 378
Query: 415 --TDNTVAE--AKNNLS--------NMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDA 462
T+ + A K+ +S +MS + S P +E++K V EKV
Sbjct: 379 PVTETSAATLVEKDEISVGNSGDSDDMSTKNANQGSGSGP----KESQKPMVESEKVESQ 434
Query: 463 LEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGER 522
EEK + QE F++ NKLEA + FK+LL+SA VGSDWTW+QA+R IIND+RYGALRTLGER
Sbjct: 435 TEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLGER 494
Query: 523 KTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK 582
K AFNE+L Q K+ EER + KK +D+K+MLEE VELT STRWSK VTMFE+DERFK
Sbjct: 495 KQAFNEFLLQTKRAAEEERLARQKKLYEDFKRMLEECVELTPSTRWSKTVTMFEDDERFK 554
Query: 583 ALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDR 642
ALERE+DR+++F+DH+ ELK+K R KA E+RKRNIIEY++FLESC+FIK N+QWRKVQDR
Sbjct: 555 ALEREKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKPNSQWRKVQDR 614
Query: 643 LEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADV 702
LE DERCSRL+K+D+LEIFQEYL DLE+EEEE++KIQKEEL K ERK+RDEF L++ +
Sbjct: 615 LEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVERKHRDEFHGLLDEHI 674
Query: 703 ALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKD 762
A G LTAKT WRDY +KVKD P Y A+ASN+SG+TPKDLFED VE+L+K+ E K++IKD
Sbjct: 675 ATGELTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKRDHELKSQIKD 734
Query: 763 AVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKR 822
+KLRK+ LS+ TF++FK S+ ED P I DV LKL+FDDLL + KEKEEKEA+K+ R
Sbjct: 735 VLKLRKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLLERAKEKEEKEARKQTR 794
Query: 823 LEDEFFDLLCSVK 835
++ D+L S K
Sbjct: 795 QTEKLVDMLRSFK 807
>sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A
PE=1 SV=1
Length = 958
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/817 (50%), Positives = 549/817 (67%), Gaps = 66/817 (8%)
Query: 26 DPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPL 85
+PP+ G +Q+RP+VP Q QH+VP ASQ F P G + + P + L
Sbjct: 4 NPPQSSG----TQFRPMVPGQQGQHFVPAASQPFHPYGHVPPNVQSQPPQYSQPIQQQQL 59
Query: 86 MHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHI--PPSSLPRPNVQALSSYPP--GLGG 141
P RPG P H+ Q +S+P Q +N I S+ P+PN PP G
Sbjct: 60 ---FPVRPGQPV--HITSSSQAVSVPYIQ-TNKILTSGSTQPQPNA------PPMTGFAT 107
Query: 142 LGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSIS-AGGQLGVSVSQSTVSST 200
G P ++ YTF PSSY Q Q V QP SQMHV + A V V+QST +
Sbjct: 108 SGPPFSSPYTFVPSSYPQQQPTSLV-----QPNSQMHVAGVPPAANTWPVPVNQSTSLVS 162
Query: 201 PVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 260
PVQ T +Q ++ P L P+SA +DW+EHTSADGR+YY+NKRT+ S W+KP E
Sbjct: 163 PVQQTGQQTPVAVSTDP-GNLTPQSA----SDWQEHTSADGRKYYYNKRTKQSNWEKPLE 217
Query: 261 LMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSE 320
LMT +ERADAST WKEFT+P+G+KYYYNKVTK+SKW++P++LKLAREQA+ AS K + SE
Sbjct: 218 LMTPLERADASTVWKEFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKTSLSE 277
Query: 321 TSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSP 380
T +S A SS+D++ STV +V S + + ++S Q L +VP T P
Sbjct: 278 AG---STPLSH-----HAASSSDLAVSTVTSVVPSTSSALTGHSSSPIQAGL-AVPVTRP 328
Query: 381 VITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDK 440
++AP+ S +I + T+ T + +NLS+ A D ++D
Sbjct: 329 -----------------PSVAPVTPTSGAISD--TEATTIKG-DNLSSRGADD---SNDG 365
Query: 441 VPPPVTE-ETRKDAVRGE-KVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDW 498
E E ++ +V G+ +S A ++ VE E YA K EAK AFK+LLES NV SDW
Sbjct: 366 ATAQNNEAENKEMSVNGKANLSPAGDKANVE-EPMVYATKQEAKAAFKSLLESVNVHSDW 424
Query: 499 TWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEE 558
TW+Q L+ I++D+RYGALRTLGERK AFNEYLGQ+KK +AEERR + KKAR+++ KMLEE
Sbjct: 425 TWEQTLKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREEFVKMLEE 484
Query: 559 SVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNII 618
EL+SS +WSKA+++FEND+RFKA++R RDR+D+FD+++ EL++KER KA EE ++ +
Sbjct: 485 CEELSSSLKWSKAMSLFENDQRFKAVDRPRDREDLFDNYIVELERKEREKAAEEHRQYMA 544
Query: 619 EYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKI 678
+YRKFLE+CD+IKA TQWRK+QDRLE D+RCS L+K+DRL F+EY+ DLEKEEEE +++
Sbjct: 545 DYRKFLETCDYIKAGTQWRKIQDRLEDDDRCSCLEKIDRLIGFEEYILDLEKEEEELKRV 604
Query: 679 QKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTP 738
+KE + + ERKNRD FR L+E VA G LTAKT W DYCI++KD P Y AVASNTSGSTP
Sbjct: 605 EKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAVASNTSGSTP 664
Query: 739 KDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNL 798
KDLFEDV EEL+KQ+ EDK+ +KDA+K RKI++ S+W FEDFK+++ ED ++ ISD+NL
Sbjct: 665 KDLFEDVTEELEKQYHEDKSYVKDAMKSRKISMVSSWLFEDFKSAISEDLSTQQISDINL 724
Query: 799 KLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVK 835
KLI+DDL+ +VKEKEEKEA+K +RL +EF +LL + K
Sbjct: 725 KLIYDDLVGRVKEKEEKEARKLQRLAEEFTNLLHTFK 761
Score = 36.6 bits (83), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 82/162 (50%), Gaps = 7/162 (4%)
Query: 456 GEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGA 515
G D E+ T E E + +K K+A K+ ++ S W ++ AI D
Sbjct: 661 GSTPKDLFEDVTEELEKQYHEDKSYVKDAMKS--RKISMVSSWLFEDFKSAISEDLSTQQ 718
Query: 516 LRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMF 575
+ + K +++ +G+ K+++ +E R KL++ +++ +L E+T ++ W + +
Sbjct: 719 ISDIN-LKLIYDDLVGRVKEKEEKEAR-KLQRLAEEFTNLLHTFKEITVASNWEDSKQLV 776
Query: 576 ENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNI 617
E + ++++ E + +F++++ L++K + K ERKR+
Sbjct: 777 EESQEYRSIGDESVSQGLFEEYITSLQEKAKEK---ERKRDE 815
>sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a
PE=1 SV=1
Length = 953
Score = 233 bits (593), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 191/599 (31%), Positives = 306/599 (51%), Gaps = 48/599 (8%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
W EH S DGR YY+N T+ STW+KP +L T E+ + WKE+ S G+ YYYN TK
Sbjct: 146 WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTK 205
Query: 293 QSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVI 352
+S+W+ P EL+ ++G Q+ + S +++KA S+ T
Sbjct: 206 ESRWAKPKELE---------DLEGYQNTIVAGGLITKSNLHAMIKAEESSKQEECTTAST 256
Query: 353 VSSPVAVVPIIAAS--------ETQPALVSVPSTSPVITSSVVANADG-FPKTVDAIAPM 403
P +P ++ A + + + TS+ N G P +AP
Sbjct: 257 APVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTNTVGSVP-----VAPE 311
Query: 404 IDVSSSIGEAV-TDNTVA---EAKNNLSNMSA-SDLVGASDKVPPPVTEETRKDAVRGEK 458
+V+S + AV +NTV E + L+N +A DL G ++ T ++ + E
Sbjct: 312 PEVTSIVATAVDNENTVTVSTEEQAQLANTTAIQDLSG-------DISSNTGEEPAKQET 364
Query: 459 VSDALEEKTVEQEH-----FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRY 513
VSD +K E+ + + K EAK AFK LL+ V S+ +W+QA++ IIND RY
Sbjct: 365 VSDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRY 424
Query: 514 GALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVT 573
AL L E+K AFN Y Q +K++ EE R K K+A++ +++ LE ++TS+TR+ KA
Sbjct: 425 SALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQ 484
Query: 574 MFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKAN 633
MF E + A+ ERDR ++++D L L +KE+ +A++ RKRN + L++ + +
Sbjct: 485 MFGEMEVWNAIS-ERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYS 543
Query: 634 TQWRKVQDRL------EADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTE 687
T W + Q L DE +DK D L F+E++ LEKEEEE+++ + +
Sbjct: 544 TTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQ 603
Query: 688 RKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVE 747
RKNR+ F+ ++ G L + ++W + + + + GST DLF+ VE
Sbjct: 604 RKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQ-PGSTALDLFKFYVE 662
Query: 748 ELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL 806
+L+ ++ ++K IKD +K + + TFEDF A + S + N+KL F+ LL
Sbjct: 663 DLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLL 721
>sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A
PE=1 SV=2
Length = 957
Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 185/603 (30%), Positives = 308/603 (51%), Gaps = 36/603 (5%)
Query: 225 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRK 284
+A G ++ W EH S DGR YY+N T+ STW+KP +L T E+ + WKE+ S G+
Sbjct: 138 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKP 197
Query: 285 YYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADI 344
YYYN TK+S+W+ P EL+ ++G Q+ S + S +++KA S+
Sbjct: 198 YYYNSQTKESRWAKPKELE---------DLEGYQNTIVAGSLITKSNLHAMIKAEESSKQ 248
Query: 345 SSSTVEVIVSSPVAVVPIIAAS-----ETQPALVSVPSTSPVITSSVVANADGFPKTVDA 399
T P +P ++ + + + + ++ + TV
Sbjct: 249 EECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSG 308
Query: 400 IAPMI---DVSSSIGEAV-TDNTVAEAKNNLSNMSASDLV-GASDKVPPPVTEETRKDAV 454
P++ +V+S + V +NTV + + ++++ + S +V EET K
Sbjct: 309 TVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQ-- 366
Query: 455 RGEKVSDALEEKTVEQEH-----FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIIN 509
E V+D +K E+ + + K EAK AFK LL+ V S+ +W+QA++ IIN
Sbjct: 367 --ETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIIN 424
Query: 510 DRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWS 569
D RY AL L E+K AFN Y Q +K++ EE R K K+A++ +++ LE ++TS+TR+
Sbjct: 425 DPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYK 484
Query: 570 KAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDF 629
KA MF E + A+ ERDR ++++D L L +KE+ +A++ RKRN + L++
Sbjct: 485 KAEQMFGEMEVWNAI-SERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMAN 543
Query: 630 IKANTQWRKVQDRL------EADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEEL 683
+ +T W + Q L DE +DK D L F+E++ LEKEEEE+++
Sbjct: 544 VTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRE 603
Query: 684 SKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFE 743
+ +RKNR+ F+ ++ G L + ++W + + + + GST DLF+
Sbjct: 604 RRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQ-PGSTALDLFK 662
Query: 744 DVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFD 803
VE+L+ ++ ++K IKD +K + + TFEDF A + S + N+KL F+
Sbjct: 663 FYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFN 722
Query: 804 DLL 806
LL
Sbjct: 723 SLL 725
>sp|Q80W14|PR40B_MOUSE Pre-mRNA-processing factor 40 homolog B OS=Mus musculus GN=Prpf40b
PE=2 SV=2
Length = 870
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 116/343 (33%), Positives = 192/343 (55%), Gaps = 8/343 (2%)
Query: 473 FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQ 532
+++N+ +AK AFK LL V S+ +W+QA++ ++ D RY AL L E+K AFN Y Q
Sbjct: 271 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQ 330
Query: 533 KKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKD 592
++K++ EE RL+ K+A+ + LE+ +TS+TR+ +A F + E + A+ ER+RK+
Sbjct: 331 REKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGDLEVW-AVVPERERKE 389
Query: 593 MFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRL------EAD 646
++DD L L +KE+ +A++ R+RNI + L+ + T W + Q L D
Sbjct: 390 VYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQD 449
Query: 647 ERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGT 706
++ +DK D L F+E++ LE+EEEE+R+ + + +RKNR+ F+ ++ G
Sbjct: 450 QQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQSFLDELHETGQ 509
Query: 707 LTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKL 766
L + + W + V + + GSTP DLF+ VEEL+ +F ++K IKD +K
Sbjct: 510 LHSMSTWMELYPAVSTDVRFANMLGQ-PGSTPLDLFKFYVEELKARFHDEKKIIKDILKD 568
Query: 767 RKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKV 809
R + FEDF + D + + N+KL F+ LL K
Sbjct: 569 RGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKA 611
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 199 STPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 258
+ PV A T +SA T P++ W EH + DGR YY+N + S W+KP
Sbjct: 70 AVPVTAATAPGADTASSAVAGTGPPRAL------WSEHVAPDGRIYYYNADDKQSVWEKP 123
Query: 259 FELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302
L + E + WKE+ S G+ YYYN +++S+W+ P +L
Sbjct: 124 SVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQESRWTRPKDL 167
Score = 40.0 bits (92), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDELK 303
W E +PDGR YYYN KQS W P LK
Sbjct: 98 WSEHVAPDGRIYYYNADDKQSVWEKPSVLK 127
>sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens GN=PRPF40B
PE=1 SV=1
Length = 871
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 189/340 (55%), Gaps = 8/340 (2%)
Query: 473 FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQ 532
+++N+ +AK AFK LL V S+ +W+QA++ ++ D RY AL L E+K AFN Y Q
Sbjct: 271 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQ 330
Query: 533 KKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKD 592
++K++ EE RL+ K+A+ + LE+ +TS+TR+ +A F E + A+ ERDRK+
Sbjct: 331 REKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVW-AVVPERDRKE 389
Query: 593 MFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRL------EAD 646
++DD L L +KE+ +A++ R+RNI + L+ + T W + Q L D
Sbjct: 390 VYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQD 449
Query: 647 ERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGT 706
+ +DK D L F+E++ LE+EEEE+R+ + + +RKNR+ F+ ++ G
Sbjct: 450 HQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQ 509
Query: 707 LTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKL 766
L + + W + V + A GSTP DLF+ VEEL+ +F ++K IKD +K
Sbjct: 510 LHSMSTWMELYPAVSTDVRF-ANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKD 568
Query: 767 RKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL 806
R + FEDF + D + + N+KL F+ LL
Sbjct: 569 RGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLL 608
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 199 STPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 258
+ PV A T +SA T P++ W EH + DGR YY+N + S W+KP
Sbjct: 70 AVPVTAATAPGADTASSAVAGTGPPRAL------WSEHVAPDGRIYYYNADDKQSVWEKP 123
Query: 259 FELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302
L + E + WKE+ S G+ YYYN +K+S+W+ P +L
Sbjct: 124 SVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDL 167
>sp|P34600|YO61_CAEEL WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans
GN=ZK1098.1 PE=1 SV=2
Length = 724
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/385 (29%), Positives = 212/385 (55%), Gaps = 20/385 (5%)
Query: 457 EKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGAL 516
E V+D +E K + E F + + + ++ WDQA++ I ND R+ L
Sbjct: 215 ESVNDEVELKKRQSERF--------RELLRDKYNDGKITTNCNWDQAVKWIQNDPRFRIL 266
Query: 517 RTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFE 576
+ E+K FN + Q+ K++ +E+RL +KK+++D +K L+E ++ S ++ KA +F
Sbjct: 267 NKVSEKKQLFNAWKVQRGKEERDEKRLAIKKSKEDLEKFLQEHPKMKESLKYQKASDIFS 326
Query: 577 NDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQW 636
+ + A+ E DRK++F D +D + ++++ K +E+RKR+I + L+S + I T W
Sbjct: 327 KEPLWIAVNDE-DRKEIFRDCIDFVARRDKEKKEEDRKRDIAAFSHVLQSMEQITYKTTW 385
Query: 637 RKVQDRLEADERCSR------LDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKN 690
+ Q L + + + +DK D L +F++++ EKE +E+++ +++ L + +RK
Sbjct: 386 AQAQRILYENPQFAERKDLHFMDKEDALTVFEDHIKQAEKEHDEEKEQEEKRLRRQQRKV 445
Query: 691 RDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQ 750
R+E+R L+E+ G LT+ + W + + + GS+P DLF+ VE+L+
Sbjct: 446 REEYRLLLESLHKRGELTSMSLWTS-LFPIISTDTRFELMLFQPGSSPLDLFKFFVEDLK 504
Query: 751 KQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVK 810
+Q+ ED+ IK+ + + + +T + +F V+ + N+KL ++ L+ K +
Sbjct: 505 EQYTEDRRLIKEILTEKGCQVIATTEYREFSDWVVSHEKGGKVDHGNMKLCYNSLIEKAE 564
Query: 811 EK---EEKEAKKRK-RLEDEFFDLL 831
K EEKE+ +RK RLE EF +LL
Sbjct: 565 SKAKDEEKESLRRKRRLESEFRNLL 589
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 24/216 (11%)
Query: 156 SYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTAS 215
S+ P L+ NI + +P + + Q V + Q S V P +AA T
Sbjct: 7 SFLNPNLVAAANIQQVLLNQRFGMPPVGSIAQ--VPLLQMPTHSV-VAP---HVAAPTRP 60
Query: 216 APL---PTL---QPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERAD 269
+P+ P + + S+ V++DW HT+ G YY N+ T+ ++W KP L T +ER+
Sbjct: 61 SPMLVPPGMGIDESHSSPSVESDWSVHTNEKGTPYYHNRVTKQTSWIKPDVLKTPLERST 120
Query: 270 AST----DWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNS 325
+ WKEF S DG+ YYYN +TK+++W PD ++ + + + A+ T
Sbjct: 121 SGQPQQGQWKEFMSDDGKPYYYNTLTKKTQWVKPDGEEITKGEQKPAAKAATVD------ 174
Query: 326 QTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVP 361
+++ ++V + + +D+ + + S P +P
Sbjct: 175 --TVALAAAVQQKKAESDLDKAMKATLASMPNVPLP 208
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 464 EEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERK 523
E K ++E + K ++ F+ LL+ NV D W I D+ Y A+ ER+
Sbjct: 564 ESKAKDEEKESLRRKRRLESEFRNLLKEHNVDKDSEWTVIKPKIEKDKAYLAMENDDERE 623
Query: 524 TAFNEY 529
TAFN Y
Sbjct: 624 TAFNHY 629
>sp|O14176|PRP40_SCHPO Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp40 PE=1 SV=1
Length = 695
Score = 149 bits (377), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 137/575 (23%), Positives = 262/575 (45%), Gaps = 85/575 (14%)
Query: 270 ASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL------KLAR-EQAEKASIKGTQSETS 322
++DW E + D R YYYN VT++S W P+EL KL++ E A+ G + +
Sbjct: 32 VASDWHEVKTEDSRVYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATADGKKYWYN 91
Query: 323 PNSQTSISFPSSVVKAPSSADISSSTVEVIVSSP----VAVVPIIAASETQPALVSVPST 378
N++ S+ DI +V P A+ I +++ +PA+ S+
Sbjct: 92 VNTRESV------------WDIPDEYKAALVDEPEQQKKALSSKIKSNDNKPAVQSIQRH 139
Query: 379 SPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGAS 438
P + + P + P D S I + T+ + V
Sbjct: 140 GPDVAA---------PSS----QPAKDQSQQISQGSHKRTI-------------NFVQQK 173
Query: 439 DKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDW 498
DK ++++ + +H Y A+ AF L+S NV W
Sbjct: 174 DK----------------------RQKRSNDYQHENYDTYEAAERAFFKFLDSHNVNPSW 211
Query: 499 TWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEE 558
TW+Q +R + + + Y ++ RK AF+ Y+ ++ + ++ K R ++ +ML+
Sbjct: 212 TWEQTVRELCDAKGYYVMKDPWHRKCAFDAYILNYLTDQSDAEKNRVTKIRKEFIEMLKS 271
Query: 559 SVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNII 618
S ++ S T W F + F A E +++ +F ++ +L + E+ ++ RK +
Sbjct: 272 SDKIHSYTLWRTVKNEFSSHPAFNATSSETEQQQLFFEYKQKLLEDEKQLEKDRRKEALD 331
Query: 619 EYRKFLESCDFIKANTQWRKVQDRLEADERCSR------LDKMDRLEIFQEYLNDLEKEE 672
++ L + +F + T+W Q + + D R +R L K+D L F++++ LE+E
Sbjct: 332 DFCSLLRNMNF-EPYTRWSVAQAKFDQDPRYTRNSNMKYLSKLDALVAFEDHVKHLEREY 390
Query: 673 EEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASN 732
++ QK+E + ERKNRD FR L++ +T +T W++ +KD P Y+ +
Sbjct: 391 ILDKQKQKKEKHRIERKNRDAFRALLQDLRVQKKITLRTKWKELYPIIKDDPRYLNLLGQ 450
Query: 733 TSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPP 792
SGSTP DLF D + +L+ ++E + + D +++ +I++ T + A + E
Sbjct: 451 -SGSTPLDLFWDTIVDLENMYREKRNLVLDCLEVLQISVDDTSNIPEIIARLSEKLKDRE 509
Query: 793 ISDVNLKLIFDDLLIKVKEK------EEKEAKKRK 821
S+ + + ++++ ++++K EEK A +R+
Sbjct: 510 ESEAVTEDLIEEVVNRLRDKAIHKKAEEKRADERR 544
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 112/451 (24%), Positives = 190/451 (42%), Gaps = 67/451 (14%)
Query: 197 VSSTPVQPTD-EQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTW 255
+S+ P Q ++ ++ T++ P+ P ++ V +DW E + D R YY+N TR S W
Sbjct: 1 MSAPPWQTSEYDETEGFTSNQEGPSAAP--SKTVASDWHEVKTEDSRVYYYNSVTRKSVW 58
Query: 256 DKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAR----EQAEK 311
+KP ELM E+ + WKE+ + DG+KY+YN T++S W +PDE K A EQ +K
Sbjct: 59 EKPEELMNDFEKKLSKLAWKEYATADGKKYWYNVNTRESVWDIPDEYKAALVDEPEQQKK 118
Query: 312 ASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASE---- 367
A +S + + SI V APSS + ++ S + + +
Sbjct: 119 ALSSKIKSNDNKPAVQSIQRHGPDVAAPSSQPAKDQSQQISQGSHKRTINFVQQKDKRQK 178
Query: 368 ---------------TQPALVSV-------PSTSPVITSSVVANADGFPKTVDAIAPMID 405
+ A PS + T + +A G+ D
Sbjct: 179 RSNDYQHENYDTYEAAERAFFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCA 238
Query: 406 VSSSIGEAVTDNTVAEAKNNLSNMSAS--DLVGASDKVPPPVTEETRKDAVRGEKVSDAL 463
+ I +TD + AE KN ++ + +++ +SDK+ T K+ +A
Sbjct: 239 FDAYILNYLTDQSDAE-KNRVTKIRKEFIEMLKSSDKIHSYTLWRTVKNEFSSHPAFNAT 297
Query: 464 EEKTVEQE-HFAYANKL-------------EAKNAFKALLESANVGSDWTWDQALRAIIN 509
+T +Q+ F Y KL EA + F +LL + N W A
Sbjct: 298 SSETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRNMNFEPYTRWSVAQAKFDQ 357
Query: 510 DRRY------------GALRTLGER-KTAFNEYLGQKKKQDAEERRLKLKKARDDYKKML 556
D RY AL + K EY+ K+KQ E+ R++ +K RD ++ +L
Sbjct: 358 DPRYTRNSNMKYLSKLDALVAFEDHVKHLEREYILDKQKQKKEKHRIE-RKNRDAFRALL 416
Query: 557 EE---SVELTSSTRWSKAVTMFENDERFKAL 584
++ ++T T+W + + ++D R+ L
Sbjct: 417 QDLRVQKKITLRTKWKELYPIIKDDPRYLNL 447
>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1
SV=2
Length = 1098
Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 172/337 (51%), Gaps = 36/337 (10%)
Query: 479 LEAK-NAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQD 537
LEA+ FK +L V + TW++ L I+ D RY L ERK F++Y+ + +++
Sbjct: 659 LEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNP-KERKQVFDQYVKTRAEEE 717
Query: 538 AEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDH 597
E++ K+ +A++D+KKM+EE+ + +S+ D RFKA+E+ +DR+ +F++
Sbjct: 718 RREKKNKIMQAKEDFKKMMEEA-KFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEF 776
Query: 598 LDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMD- 656
+ ++KE+ ++ ++ ++ + L S + + ++W KV+D++E+D R +D
Sbjct: 777 VAAARKKEKEDSKTRGEKIKSDFFELL-SNHHLDSQSRWSKVKDKVESDPRYKAVDSSSM 835
Query: 657 RLEIFQEYLN------DLEKEE-------------EEQRKIQKEELSKT-------ERKN 690
R ++F++Y+ D EKE+ E +R++QK +T E+
Sbjct: 836 REDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHK 895
Query: 691 RDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQ 750
R+E + +A ++ ++ +W D ++ + + S + LF + +E L
Sbjct: 896 REEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWES-GSLLEREEKEKLFNEHIEALT 954
Query: 751 KQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLED 787
K+ +E ++ D ITL+STW ++ K + ED
Sbjct: 955 KKKREHFRQLLDETSA--ITLTSTW--KEVKKIIKED 987
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 142/302 (47%), Gaps = 36/302 (11%)
Query: 458 KVSDALEEKTVEQEHFAYANK-LEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGAL 516
+V D + E+E NK ++AK FK ++E A T+ + D R+ A+
Sbjct: 704 QVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAI 763
Query: 517 RTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFE 576
+ +R+ FNE++ +K++ E+ + + +K + D+ ++L L S +RWSK E
Sbjct: 764 EKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKVE 822
Query: 577 NDERFKALERERDRKDMFDDHLDEL-KQKERAKAQEERKRNIIEYRKFLESCDFIKANTQ 635
+D R+KA++ R+D+F +++++ K + K +E ++ IE + KA ++
Sbjct: 823 SDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSE 882
Query: 636 WRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEK------------------------- 670
K E D + + + ++ F+ L+D+ +
Sbjct: 883 QTK-----EIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLL 937
Query: 671 EEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVA 730
E EE+ K+ E + +K R+ FR+L++ A+ TLT + W++ +K+ P + +
Sbjct: 938 EREEKEKLFNEHIEALTKKKREHFRQLLDETSAI-TLT--STWKEVKKIIKEDPRCIKFS 994
Query: 731 SN 732
S+
Sbjct: 995 SS 996
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 110/227 (48%), Gaps = 29/227 (12%)
Query: 455 RGEKVSDALEEKTVEQEHFAYANKLE-AKNAFKALLESANVGSDWTWDQALRAIINDRRY 513
R +V A E+T E + +K E A FKALL SD +W R + D R+
Sbjct: 872 REREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRW 931
Query: 514 --GALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKA 571
G+L E++ FNE++ KK R+ ++++L+E+ +T ++ W +
Sbjct: 932 ESGSLLEREEKEKLFNEHI-----------EALTKKKREHFRQLLDETSAITLTSTWKEV 980
Query: 572 VTMFENDER---FKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFL--ES 626
+ + D R F + +R++ R+ F++++ + +A R +++ KF+ S
Sbjct: 981 KKIIKEDPRCIKFSSSDRKKQRE--FEEYIRDKYITAKADF-----RTLLKETKFITYRS 1033
Query: 627 CDFIKANTQWRK-VQDRLEADERCSRLDKM--DRLEIFQEYLNDLEK 670
I+ + Q K V+ L+ D+R LD + +R ++ Y++DL++
Sbjct: 1034 KKLIQESDQHLKDVEKILQNDKRYLVLDCVPEERRKLIVAYVDDLDR 1080
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 44/173 (25%)
Query: 96 PAPSHVPPPPQVMSLPNAQPSNHIP--PSSLPRPNVQALSSYPP--------GLGGLGRP 145
PAP+ P V ++P P P P S+P+P A+ ++PP L G+ P
Sbjct: 322 PAPTATP----VQTVPQPHPQTLPPAVPHSVPQPTT-AIPAFPPVMVPPFRVPLPGMPIP 376
Query: 146 VAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPT 205
+ S + + G M+ VP I Q+ ++ S +T++
Sbjct: 377 LPGVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHP--QVAIAASPATLA------- 427
Query: 206 DEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 258
AT S +W E+ +ADG+ YY+N RT STW+KP
Sbjct: 428 ----GATAVS----------------EWTEYKTADGKTYYYNNRTLESTWEKP 460
Score = 40.4 bits (93), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDELKLARE 307
W E +PDG+ YYYN T++S W+ PD +K+ ++
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQ 170
Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 264 TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLP 299
T+ A A ++W E+ + DG+ YYYN T +S W P
Sbjct: 425 TLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKP 460
Score = 37.7 bits (86), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKP 258
W E+ + DG+ YY+N RTR S W KP
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKP 162
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 208 QMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIER 267
Q A A+AP+P T W + D R +++N TR+S WD+P +L I R
Sbjct: 519 QKAKPVATAPIPG----------TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL---IGR 565
Query: 268 ADA 270
AD
Sbjct: 566 ADV 568
>sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1
SV=2
Length = 1100
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 172/337 (51%), Gaps = 36/337 (10%)
Query: 479 LEAK-NAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQD 537
LEA+ FK +L V + TW++ L I+ D RY L ERK F++Y+ + +++
Sbjct: 661 LEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNP-KERKQVFDQYVKTRAEEE 719
Query: 538 AEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDH 597
E++ K+ +A++D+KKM+EE+ + +S+ D RFKA+E+ +DR+ +F++
Sbjct: 720 RREKKNKIMQAKEDFKKMMEEA-KFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEF 778
Query: 598 LDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMD- 656
+ ++KE+ ++ ++ ++ + L S + + ++W KV+D++E+D R +D
Sbjct: 779 VAAARKKEKEDSKTRGEKIKSDFFELL-SNHHLDSQSRWSKVKDKVESDPRYKAVDSSSM 837
Query: 657 RLEIFQEYLN------DLEKEE-------------EEQRKIQKEELSKT-------ERKN 690
R ++F++Y+ D EKE+ E +R++QK +T E+
Sbjct: 838 REDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHK 897
Query: 691 RDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQ 750
R+E + +A ++ ++ +W D ++ + + S + LF + +E L
Sbjct: 898 REEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWES-GSLLEREEKEKLFNEHIEALT 956
Query: 751 KQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLED 787
K+ +E ++ D ITL+STW ++ K + ED
Sbjct: 957 KKKREHFRQLLDETSA--ITLTSTW--KEVKKIIKED 989
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 142/302 (47%), Gaps = 36/302 (11%)
Query: 458 KVSDALEEKTVEQEHFAYANK-LEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGAL 516
+V D + E+E NK ++AK FK ++E A T+ + D R+ A+
Sbjct: 706 QVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAI 765
Query: 517 RTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFE 576
+ +R+ FNE++ +K++ E+ + + +K + D+ ++L L S +RWSK E
Sbjct: 766 EKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKVE 824
Query: 577 NDERFKALERERDRKDMFDDHLDEL-KQKERAKAQEERKRNIIEYRKFLESCDFIKANTQ 635
+D R+KA++ R+D+F +++++ K + K +E ++ IE + KA ++
Sbjct: 825 SDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSE 884
Query: 636 WRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEK------------------------- 670
K E D + + + ++ F+ L+D+ +
Sbjct: 885 QTK-----EIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLL 939
Query: 671 EEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVA 730
E EE+ K+ E + +K R+ FR+L++ A+ TLT + W++ +K+ P + +
Sbjct: 940 EREEKEKLFNEHIEALTKKKREHFRQLLDETSAI-TLT--STWKEVKKIIKEDPRCIKFS 996
Query: 731 SN 732
S+
Sbjct: 997 SS 998
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 110/227 (48%), Gaps = 29/227 (12%)
Query: 455 RGEKVSDALEEKTVEQEHFAYANKLE-AKNAFKALLESANVGSDWTWDQALRAIINDRRY 513
R +V A E+T E + +K E A FKALL SD +W R + D R+
Sbjct: 874 REREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRW 933
Query: 514 --GALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKA 571
G+L E++ FNE++ KK R+ ++++L+E+ +T ++ W +
Sbjct: 934 ESGSLLEREEKEKLFNEHI-----------EALTKKKREHFRQLLDETSAITLTSTWKEV 982
Query: 572 VTMFENDER---FKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFL--ES 626
+ + D R F + +R++ R+ F++++ + +A R +++ KF+ S
Sbjct: 983 KKIIKEDPRCIKFSSSDRKKQRE--FEEYIRDKYITAKADF-----RTLLKETKFITYRS 1035
Query: 627 CDFIKANTQWRK-VQDRLEADERCSRLDKM--DRLEIFQEYLNDLEK 670
I+ + Q K V+ L+ D+R LD + +R ++ Y++DL++
Sbjct: 1036 KKLIQESDQHLKDVEKILQNDKRYLVLDCVPEERRKLIVAYVDDLDR 1082
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261
++W E+ +ADG+ YY+N RT STW+KP EL
Sbjct: 435 SEWTEYKTADGKTYYYNNRTLESTWEKPQEL 465
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 264 TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELK 303
T+ A A ++W E+ + DG+ YYYN T +S W P ELK
Sbjct: 427 TLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK 466
Score = 40.0 bits (92), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDELKLARE 307
W E +PDG+ YYYN T++S W+ PD +K+ ++
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQ 170
Score = 37.7 bits (86), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKP 258
W E+ + DG+ YY+N RTR S W KP
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKP 162
>sp|Q9LT25|PR40C_ARATH Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana GN=MED35C
PE=1 SV=1
Length = 835
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 153/600 (25%), Positives = 241/600 (40%), Gaps = 78/600 (13%)
Query: 67 LIMNAGFPSQP--LQPPFRPLMHPLPARPGPPAPSHVPPP-----PQVMSLPNAQPSNHI 119
++ NA F +P L PP LM PA PG S P P P M+ P P +
Sbjct: 88 MLANAPF-GRPGTLAPPG--LMTSPPAFPGSNPFSTTPRPGMSAGPAQMN-PGIHPHMYP 143
Query: 120 PPSSLPRPNVQALSSYPPGLGGLGR-PVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMH 178
P SLP Q + PP +GG+ R P + T P SY P I P S H
Sbjct: 144 PYHSLPG-TPQGMWLQPPSMGGIPRAPFLSHPTTFPGSYPFPVR----GISPNLPYSGSH 198
Query: 179 VPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAE---GVQTD-WK 234
S G +G V + P + D ++ + L + ++ G + D W
Sbjct: 199 PLGASPMGSVG------NVHALPGRQPD--ISPGRKTEELSGIDDRAGSQLVGNRLDAWT 250
Query: 235 EHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADA-----------STDWKEFTSPDGR 283
H S G YY+N T ST++KP ++ TDW ++ DG+
Sbjct: 251 AHKSEAGVLYYYNSVTGQSTYEKPPGFGGEPDKVPVQPIPVSMESLPGTDWALVSTNDGK 310
Query: 284 KYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPN------SQTSISFPSSVVK 337
KYYYN TK S W +P E+K ++ E+ +++ S S + TS+S P+
Sbjct: 311 KYYYNNKTKVSSWQIPAEVKDFGKKLEERAMESVASVPSADLTEKGSDLTSLSAPAISNG 370
Query: 338 APSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPS------TSPVITSSVVANAD 391
+A + ++ SS + +V P ++ S T+ V S N+
Sbjct: 371 GRDAASLKTTN---FGSSALDLVKKKLHDSGMPVSSTITSEANSGKTTEVTPSGESGNST 427
Query: 392 GFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGAS---DKVPPPVTEE 448
G K + D SS + + + E M + +K P + +
Sbjct: 428 GKVKDAPGAGALSDSSSDSEDEDSGPSKEECSKQFKEMLKERGIAPFSKWEKELPKIIFD 487
Query: 449 TRKDAVRGEKVSDALEEKTVEQEHFAYANKLE-----AKNAFKALLESANVGSDWTWDQA 503
R A+ V +L E+ V+ + A F+ LL+ A+ D D
Sbjct: 488 PRFKAIPSHSVRRSLFEQYVKTRAEEERREKRAAHKAAIEGFRQLLDDASTDIDQHTD-- 545
Query: 504 LRAII----NDRRYGALRTLGERKTAFNEY---LGQKKKQDAEERRLKLKKARDDYKKML 556
RA ND R+ A+ ER+ NE L + +Q A+E R A D+K ML
Sbjct: 546 YRAFKKKWGNDLRFEAIER-KEREGLLNERVLSLKRSAEQKAQEIR---AAAASDFKTML 601
Query: 557 EESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRN 616
E E++ ++ WSK N+ R++++ E DR+ + +++ ELK +R E + R+
Sbjct: 602 RER-EISINSHWSKVKDSLRNEPRYRSVAHE-DREVFYYEYIAELKAAQRGDDHEMKARD 659
Score = 39.7 bits (91), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 46/241 (19%), Positives = 99/241 (41%), Gaps = 47/241 (19%)
Query: 481 AKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKK----- 535
A + FK +L + + W + ++ N+ RY ++ +R+ + EY+ + K
Sbjct: 593 AASDFKTMLREREISINSHWSKVKDSLRNEPRYRSV-AHEDREVFYYEYIAELKAAQRGD 651
Query: 536 ----------------------------QDAEERRLKL--KKARDDYKKMLEESVELTSS 565
Q+ E R K+ K+A Y+ +L E + +
Sbjct: 652 DHEMKARDEEDKLRERERELRKRKEREVQEVERVRQKIRRKEASSSYQALLVEKIRDPEA 711
Query: 566 TRWSKAVTMFENDERFKALERE---RDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRK 622
+ W+++ + E D + +A + D++ +F DH+ L ++ + +
Sbjct: 712 S-WTESKPILERDPQKRASNPDLEPADKEKLFRDHVKSLYERCVHDFKALLAEALSSEAA 770
Query: 623 FLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEK-------EEEEQ 675
L++ D A W + L+ D R S++ + DR +++ Y+ D+ + +EE+Q
Sbjct: 771 TLQTEDGKTALNSWSTAKQVLKPDIRYSKMPRQDREVVWRRYVEDISRKQRHENYQEEKQ 830
Query: 676 R 676
R
Sbjct: 831 R 831
>sp|Q3B807|TCRGL_MOUSE Transcription elongation regulator 1-like protein OS=Mus musculus
GN=Tcerg1l PE=2 SV=3
Length = 590
Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
Query: 480 EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAE 539
E F+ +L V + TW++ L I+ D RY L + ERK F +++ + K++ +
Sbjct: 456 ERVTHFRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNS-EERKQIFEQFVKTRIKEEYK 514
Query: 540 ERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLD 599
ER+ KL A++++KK+LEES +++ T + + D+RF+ +++ +D++ F+ +
Sbjct: 515 ERKSKLLLAKEEFKKLLEES-KVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEHFFNQFIL 573
Query: 600 ELKQKERAKAQEERK 614
LK++++ RK
Sbjct: 574 ILKKRDKENRLRLRK 588
Score = 37.0 bits (84), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 479 LEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDA 538
L AK FK LLE + V T+ + D+R+ ++ +++ FN+++ KK+D
Sbjct: 521 LLAKEEFKKLLEESKVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEHFFNQFILILKKRD- 579
Query: 539 EERRLKLKKAR 549
+E RL+L+K R
Sbjct: 580 KENRLRLRKMR 590
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 630 IKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERK 689
+ A + W K ++ D R L+ +R +IF++++ KEE ++RK K L+K
Sbjct: 470 VSAFSTWEKELHKIVFDPRYLLLNSEERKQIFEQFVKTRIKEEYKERK-SKLLLAK---- 524
Query: 690 NRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEEL 749
+EF+KL+E ++ +T ++++ K + V + F + L
Sbjct: 525 --EEFKKLLEES----KVSPRTTFKEFAEKHGRDQRFRLVQKRKDQ---EHFFNQFILIL 575
Query: 750 QKQFQEDKTRIK 761
+K+ +E++ R++
Sbjct: 576 KKRDKENRLRLR 587
>sp|P33203|PRP40_YEAST Pre-mRNA-processing protein PRP40 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PRP40 PE=1 SV=1
Length = 583
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
WKE A GR YY+N T+ STW+KP EL++ E WK + DG+ YYYN T+
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTR 63
Query: 293 QSKWSLP 299
++ W++P
Sbjct: 64 ETSWTIP 70
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 140/315 (44%), Gaps = 42/315 (13%)
Query: 466 KTVEQEHFAYAN-----------KLEAKNAFKALLESANVGSDWTWDQALRAI-INDRRY 513
+T+ +E YAN K EA+ F +L+ V S W++ + + + D RY
Sbjct: 109 RTINEEESQYANNSKLLNVRRRTKEEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRY 168
Query: 514 GALRT--LGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKA 571
+ L +K F +YL + + + K ++ ++KML+ + + TRW A
Sbjct: 169 WMVDDDPLW-KKEMFEKYLSNRSADQLLKEHNETSKFKEAFQKMLQNNSHIKYYTRWPTA 227
Query: 572 VTMFENDERFK-ALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLE----- 625
+ ++ +K ++ E+ ++ F D++D L ++ ++ + + + E R++L
Sbjct: 228 KRLIADEPIYKHSVVNEKTKRQTFQDYIDTLIDTQKESKKKLKTQALKELREYLNGIITT 287
Query: 626 --SCDFIKANTQWRKVQD--------RLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQ 675
S FI W+++ + R A+ L D L + + +N +E + Q
Sbjct: 288 SSSETFI----TWQQLLNHYVFDKSKRYMANRHFKVLTHEDVLNEYLKIVNTIEN--DLQ 341
Query: 676 RKIQKEELSKTERKN--RDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNT 733
K+ + L R RD F+ L+ +V + + A T W D +K P ++ +
Sbjct: 342 NKLNELRLRNYTRDRIARDNFKSLLR-EVPIK-IKANTRWSDIYPHIKSDPRFLHMLGR- 398
Query: 734 SGSTPKDLFEDVVEE 748
+GS+ DLF D V+E
Sbjct: 399 NGSSCLDLFLDFVDE 413
>sp|Q5HZF2|WBP4_RAT WW domain-binding protein 4 OS=Rattus norvegicus GN=Wbp4 PE=2 SV=1
Length = 374
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
W E +ADG YY++ T S W+KP +++ A W E S DG YYYN T
Sbjct: 127 WVEGVTADGHCYYYDLVTGASQWEKPEGFQGNLKKTAAKAIWVEGLSEDGYTYYYNTETG 186
Query: 293 QSKWSLPDEL 302
+SKW PD+
Sbjct: 187 ESKWEKPDDF 196
>sp|Q61048|WBP4_MOUSE WW domain-binding protein 4 OS=Mus musculus GN=Wbp4 PE=1 SV=4
Length = 376
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
W E +ADG YY++ T S W+KP +++ A W E S DG YYYN T
Sbjct: 129 WVEGVTADGHCYYYDLITGASQWEKPEGFQGNLKKTAAKAVWVEGLSEDGYTYYYNTETG 188
Query: 293 QSKWSLPDEL 302
+SKW P++
Sbjct: 189 ESKWEKPEDF 198
>sp|Q5VWI1|TCRGL_HUMAN Transcription elongation regulator 1-like protein OS=Homo sapiens
GN=TCERG1L PE=2 SV=2
Length = 586
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 480 EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAE 539
E F+ +L V + TW++ L I+ D RY L + ERK F +++ + K++ +
Sbjct: 452 ERVTHFRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNS-EERKQIFEQFVKTRIKEEYK 510
Query: 540 ERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLD 599
E++ KL A++++KK+LEES +++ T + + + D+RF+ +++ +D++ F+ +
Sbjct: 511 EKKSKLLLAKEEFKKLLEES-KVSPRTTFKEFAEKYGRDQRFRLVQKRKDQEHFFNQFIL 569
Query: 600 ELKQKERAKAQEERK 614
LK++++ RK
Sbjct: 570 ILKKRDKENRLRLRK 584
Score = 37.0 bits (84), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 479 LEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDA 538
L AK FK LLE + V T+ + D+R+ ++ +++ FN+++ KK+D
Sbjct: 517 LLAKEEFKKLLEESKVSPRTTFKEFAEKYGRDQRFRLVQKRKDQEHFFNQFILILKKRD- 575
Query: 539 EERRLKLKKAR 549
+E RL+L+K R
Sbjct: 576 KENRLRLRKMR 586
>sp|O75554|WBP4_HUMAN WW domain-binding protein 4 OS=Homo sapiens GN=WBP4 PE=1 SV=1
Length = 376
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
W E +++G YY++ + S W+KP +++ T W E S DG YYYN T
Sbjct: 128 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETG 187
Query: 293 QSKWSLPDEL 302
+S+W PD+
Sbjct: 188 ESRWEKPDDF 197
>sp|Q5F457|WBP4_CHICK WW domain-binding protein 4 OS=Gallus gallus GN=WBP4 PE=2 SV=1
Length = 398
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 214 ASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTD 273
++ P +PK +W + S +G YY+N +T S W+KP + + +
Sbjct: 128 GTSESPKTEPK-------EWVQGLSPEGYTYYYNTKTGESQWEKPKGFQGNSKTSHTGSV 180
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPD 300
W E S DG YYYN T S W PD
Sbjct: 181 WVEGVSEDGHTYYYNTQTGVSTWEKPD 207
>sp|Q5U4Q0|WAC_XENTR WW domain-containing adapter protein with coiled-coil OS=Xenopus
tropicalis GN=wac PE=2 SV=1
Length = 628
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 232 DWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKY 285
DW EH S+ G++YY+N RT VS W+KP E + +R ++ + P R Y
Sbjct: 128 DWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKETSKVAVNSFPKDRDY 181
>sp|Q9BTA9|WAC_HUMAN WW domain-containing adapter protein with coiled-coil OS=Homo
sapiens GN=WAC PE=1 SV=3
Length = 647
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 232 DWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKY 285
DW EH S+ G++YY+N RT VS W+KP E + +R + + P R Y
Sbjct: 134 DWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKMAVNSFPKDRDY 187
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIK 315
D++ DW E S G+KYYYN T+ S+W P E L REQ +K + K
Sbjct: 130 DSADDWSEHISSSGKKYYYNCRTEVSQWEKPKEW-LEREQRQKEANK 175
>sp|Q6TLK4|RHG27_RAT Rho GTPase-activating protein 27 OS=Rattus norvegicus GN=Arhgap27
PE=1 SV=1
Length = 869
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 233 WKEHTSAD-GRRYYFNKRTRVSTWDKPFE-----LMTTIERADAS------TDWKEFTSP 280
W+ HT A GR YY+N T V+TW+ PFE T RA T+W ++
Sbjct: 252 WETHTDAGTGRPYYYNPDTGVTTWESPFEAPEGATSPTTSRASVGSGESLETEWGQYWDE 311
Query: 281 D-GRKYYYNKVTKQSKW 296
+ GR ++YN +T ++ W
Sbjct: 312 ESGRVFFYNPLTGETVW 328
>sp|Q7ZUK7|WAC_DANRE WW domain-containing adapter protein with coiled-coil OS=Danio
rerio GN=waca PE=2 SV=1
Length = 558
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 232 DWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADAST 272
DW EH S+ G++YY+N RT VS W+KP E + +R +T
Sbjct: 125 DWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEAT 165
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302
W E TSPDG KYYYN +T +SKW P+E+
Sbjct: 597 WTEHTSPDGFKYYYNGLTGESKWEKPEEM 625
>sp|Q6ZUM4|RHG27_HUMAN Rho GTPase-activating protein 27 OS=Homo sapiens GN=ARHGAP27 PE=1
SV=3
Length = 889
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 23/96 (23%)
Query: 214 ASAPLPTLQPKSAEGVQTDWKEHTSAD-GRRYYFNKRTRVSTWDKPFEL-------MTTI 265
A+APLP+ W+ HT A GR YY+N T V+TW+ PFE T+
Sbjct: 243 AAAPLPS----------PVWETHTDAGTGRPYYYNPDTGVTTWESPFEAAEGAASPATSP 292
Query: 266 ERADAS----TDWKEFTSPDGRK-YYYNKVTKQSKW 296
D+ T+W ++ + R+ ++YN +T ++ W
Sbjct: 293 ASVDSHVSLETEWGQYWDEESRRVFFYNPLTGETAW 328
>sp|Q06525|URN1_YEAST Pre-mRNA-splicing factor URN1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=URN1 PE=1 SV=1
Length = 465
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 273 DWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSP 323
+W+EF +P G+KYYYNK TKQS+W P+ L + +++ K +Q+E P
Sbjct: 4 EWQEFKTPAGKKYYYNKNTKQSRWEKPN---LKKGSNLESNAKESQTERKP 51
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
Query: 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKP-FELMTTIE--------------RADASTD 273
++ +W+E + G++YY+NK T+ S W+KP + + +E +
Sbjct: 1 MRGEWQEFKTPAGKKYYYNKNTKQSRWEKPNLKKGSNLESNAKESQTERKPTFSLELVNG 60
Query: 274 WKEFTSPDGRKYYYNKVTKQSK 295
W DG K Y+N +K+ K
Sbjct: 61 WHLIIYNDGTKLYFNDDSKEFK 82
>sp|Q9DBH0|WWP2_MOUSE NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2
PE=1 SV=1
Length = 870
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 190 VSVSQS-TVSSTPVQ--PTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYF 246
+SVS + +S P Q P + + A+T+ + LP ++ + + W++ +GR YY
Sbjct: 261 LSVSSNPNTTSLPAQSTPAEGEEASTSGTQQLPA-AAQAPDALPAGWEQRELPNGRVYYV 319
Query: 247 NKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLP 299
+ T+ +TW++P W++ T P GR YY + T+ + W P
Sbjct: 320 DHNTKTTTWERPL-----------PPGWEKRTDPRGRFYYVDHNTRTTTWQRP 361
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 48/142 (33%), Gaps = 46/142 (32%)
Query: 202 VQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKP--- 258
V D TT PLP W++ T GR YY + TR +TW +P
Sbjct: 316 VYYVDHNTKTTTWERPLPP-----------GWEKRTDPRGRFYYVDHNTRTTTWQRPTAE 364
Query: 259 ---------------------FELMTTIERADASTD----------WKEFTSPDGRKYYY 287
F + + ASTD W E +GR YY
Sbjct: 365 YVRNYEQWQSQRNQLQGAMQHFSQRFLYQSSSASTDHDPLGPLPPGW-EKRQDNGRVYYV 423
Query: 288 NKVTKQSKWSLPDELKLAREQA 309
N T+ ++W P + +E A
Sbjct: 424 NHNTRTTQWEDPRTQGMIQEPA 445
>sp|A2AB59|RHG27_MOUSE Rho GTPase-activating protein 27 OS=Mus musculus GN=Arhgap27 PE=1
SV=1
Length = 869
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 14/107 (13%)
Query: 233 WKEHT-SADGRRYYFNKRTRVSTWDKPFEL---MTTIERADAS--------TDWKEFTSP 280
W+ HT + GR YY+N T V+TW+ PFE T+ + AS T+W ++
Sbjct: 252 WETHTDTGTGRPYYYNPDTGVTTWESPFETPEGTTSPATSRASVGSGESLETEWGQYWDE 311
Query: 281 DGRK-YYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQ 326
+ R+ ++YN +T ++ W E Q E+ ++ + S SP Q
Sbjct: 312 ESRRVFFYNPLTGETAWEDETEELEEDHQ-EQLEMQPSLSPRSPGQQ 357
>sp|Q9Y0H4|SUDX_DROME E3 ubiquitin-protein ligase Su(dx) OS=Drosophila melanogaster
GN=Su(dx) PE=1 SV=1
Length = 949
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 28/121 (23%)
Query: 188 LGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFN 247
+G+ VSQST QP D++ PLP W+ GRRYY +
Sbjct: 343 VGLPVSQSTDPQLQTQPADDE--------PLPA-----------GWEIRLDQYGRRYYVD 383
Query: 248 KRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLARE 307
TR + W+KP L W+ GR YY + T+++ W P+ +L
Sbjct: 384 HNTRSTYWEKPTPL---------PPGWEIRKDGRGRVYYVDHNTRKTTWQRPNSERLMHF 434
Query: 308 Q 308
Q
Sbjct: 435 Q 435
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 43.1 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 15/117 (12%)
Query: 581 FKALERERDRKDMFDDHLDELKQKERAKAQEERKRNII--EYRKFLESCDFIKANTQWRK 638
K E+ER +K+ +ELK++E+ + + E++ + E K E K R+
Sbjct: 2739 LKRQEQERLQKE------EELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQ 2792
Query: 639 VQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEE----EQRKIQKEELSKTERKNR 691
Q+RL+ +E R ++ +RLE +E L+KEEE EQ ++QKEE K + + R
Sbjct: 2793 EQERLQKEEELKRQEQ-ERLE--REKQEQLQKEEELKRQEQERLQKEEALKRQEQER 2846
Score = 42.4 bits (98), Expect = 0.015, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 575 FENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANT 634
+ +E K E+ER ++ ++L+++E K QE+ + E K E K
Sbjct: 2747 LQKEEELKRQEQERLERE----KQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEE 2802
Query: 635 QWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEE----EEQRKIQKEELSKTERKN 690
R+ Q+RLE E+ +L K + L+ ++ L+KEE +EQ ++QKEE K + +
Sbjct: 2803 LKRQEQERLER-EKQEQLQKEEELK--RQEQERLQKEEALKRQEQERLQKEEELKRQEQE 2859
Query: 691 RDEFRKLMEAD 701
R E +K+ A+
Sbjct: 2860 RLERKKIELAE 2870
>sp|P46937|YAP1_HUMAN Yorkie homolog OS=Homo sapiens GN=YAP1 PE=1 SV=2
Length = 504
Score = 38.1 bits (87), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 18/82 (21%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTD------------------W 274
W+ ++ G+RY+ N + +TW P + M + A T W
Sbjct: 177 WEMAKTSSGQRYFLNHIDQTTTWQDPRKAMLSQMNVTAPTSPPVQQNMMNSASGPLPDGW 236
Query: 275 KEFTSPDGRKYYYNKVTKQSKW 296
++ + DG YY N K + W
Sbjct: 237 EQAMTQDGEIYYINHKNKTTSW 258
>sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus GN=Pclo PE=1 SV=4
Length = 5068
Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 32 GPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQP-PFRPL-MHPL 89
GP PS +P+ PQPQ V Q QP A QP P P +P HP
Sbjct: 390 GPTKPSPQQPIPAKPQPQQPVATKPQPQQP---------APAKPQPQHPTPAKPQPQHPT 440
Query: 90 PARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVA 147
PA+P P P+ P PQ + QP P + P+P + P GLG+P A
Sbjct: 441 PAKPQPQQPTPAKPQPQQPTPAKPQPQQPTP--AKPQPQHPTPAKPQPQQPGLGKPSA 496
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 333,017,192
Number of Sequences: 539616
Number of extensions: 15658445
Number of successful extensions: 107553
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 3270
Number of HSP's that attempted gapping in prelim test: 76766
Number of HSP's gapped (non-prelim): 17775
length of query: 873
length of database: 191,569,459
effective HSP length: 126
effective length of query: 747
effective length of database: 123,577,843
effective search space: 92312648721
effective search space used: 92312648721
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)