Query 002862
Match_columns 873
No_of_seqs 390 out of 1218
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 12:17:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5104 PRP40 Splicing factor 100.0 4.1E-67 8.9E-72 560.9 35.5 511 227-862 11-537 (590)
2 KOG0155 Transcription factor C 100.0 2.8E-56 6.1E-61 486.8 38.6 345 476-842 239-614 (617)
3 KOG0152 Spliceosomal protein F 100.0 2.7E-48 5.9E-53 439.9 24.4 382 473-865 20-406 (463)
4 KOG0155 Transcription factor C 100.0 6.8E-36 1.5E-40 327.4 35.6 307 433-768 249-607 (617)
5 COG5104 PRP40 Splicing factor 99.9 5.8E-23 1.3E-27 221.9 26.2 199 480-679 214-431 (590)
6 KOG0152 Spliceosomal protein F 99.7 1.6E-17 3.5E-22 189.5 13.7 350 438-812 38-428 (463)
7 PF01846 FF: FF domain; Inter 99.1 6.9E-11 1.5E-15 95.5 5.9 50 480-529 1-51 (51)
8 smart00441 FF Contains two con 99.0 3E-10 6.5E-15 93.2 5.3 52 480-531 2-54 (55)
9 PF01846 FF: FF domain; Inter 98.9 3.3E-09 7.2E-14 85.7 6.3 50 547-597 1-51 (51)
10 smart00441 FF Contains two con 98.9 4.4E-09 9.6E-14 86.3 6.0 53 547-599 2-54 (55)
11 KOG4271 Rho-GTPase activating 98.7 2.3E-07 5.1E-12 110.1 17.0 221 546-790 52-309 (1100)
12 KOG4271 Rho-GTPase activating 98.6 2.3E-06 5.1E-11 101.8 19.4 229 480-756 53-312 (1100)
13 PF00397 WW: WW domain; Inter 98.6 3.4E-08 7.3E-13 71.5 2.4 28 231-258 3-31 (31)
14 PF00397 WW: WW domain; Inter 98.5 7.3E-08 1.6E-12 69.8 3.7 30 270-299 1-31 (31)
15 cd00201 WW Two conserved trypt 98.4 1.9E-07 4.2E-12 67.2 3.4 29 231-259 2-30 (31)
16 smart00456 WW Domain with 2 co 98.4 2E-07 4.2E-12 67.9 3.4 30 230-259 2-31 (32)
17 smart00456 WW Domain with 2 co 98.3 7.6E-07 1.6E-11 64.8 4.2 31 270-300 1-31 (32)
18 cd00201 WW Two conserved trypt 98.2 2.3E-06 5E-11 61.6 4.1 30 271-300 1-30 (31)
19 KOG1891 Proline binding protei 97.9 1.5E-05 3.2E-10 81.4 4.6 70 226-301 91-160 (271)
20 KOG3259 Peptidyl-prolyl cis-tr 97.4 6.4E-05 1.4E-09 72.3 1.8 32 230-261 8-40 (163)
21 KOG3259 Peptidyl-prolyl cis-tr 97.3 9.1E-05 2E-09 71.3 1.4 34 269-302 6-40 (163)
22 KOG1924 RhoA GTPase effector D 97.1 0.0027 5.8E-08 75.3 10.5 18 739-756 927-944 (1102)
23 KOG1984 Vesicle coat complex C 97.0 0.062 1.4E-06 65.1 20.9 17 587-603 640-656 (1007)
24 KOG1924 RhoA GTPase effector D 96.7 0.0087 1.9E-07 71.1 11.1 12 523-534 787-798 (1102)
25 KOG0132 RNA polymerase II C-te 96.2 0.076 1.7E-06 63.6 14.7 36 9-44 591-630 (894)
26 KOG4849 mRNA cleavage factor I 95.9 0.091 2E-06 57.5 12.3 22 16-37 225-246 (498)
27 KOG1984 Vesicle coat complex C 95.7 0.93 2E-05 55.5 20.5 7 28-34 16-22 (1007)
28 PHA03247 large tegument protei 95.6 2 4.3E-05 58.3 24.6 11 226-236 2848-2858(3151)
29 KOG0307 Vesicle coat complex C 95.3 1.6 3.5E-05 54.7 21.6 11 297-307 943-953 (1049)
30 KOG0150 Spliceosomal protein F 94.9 0.018 4E-07 62.1 2.9 52 251-302 130-181 (336)
31 PHA03247 large tegument protei 94.8 4.5 9.8E-05 55.1 24.2 16 29-44 2565-2580(3151)
32 KOG0940 Ubiquitin protein liga 93.7 0.07 1.5E-06 60.3 4.5 73 230-302 62-146 (358)
33 KOG4302 Microtubule-associated 92.7 31 0.00067 42.3 27.9 119 476-606 117-243 (660)
34 KOG1985 Vesicle coat complex C 92.6 1.3 2.8E-05 54.0 13.0 7 656-662 620-626 (887)
35 KOG0132 RNA polymerase II C-te 92.0 7.7 0.00017 47.3 18.2 10 171-180 709-718 (894)
36 KOG2893 Zn finger protein [Gen 91.2 2.8 6E-05 44.1 11.9 18 60-77 142-159 (341)
37 KOG0608 Warts/lats-like serine 91.1 9.3 0.0002 46.1 17.3 31 7-37 173-203 (1034)
38 KOG3209 WW domain-containing p 91.0 0.38 8.2E-06 57.4 6.1 74 229-302 223-301 (984)
39 KOG4592 Uncharacterized conser 90.8 0.26 5.7E-06 57.8 4.5 12 121-132 212-223 (728)
40 PF03154 Atrophin-1: Atrophin- 89.6 27 0.00059 44.0 20.3 29 481-519 550-578 (982)
41 KOG1985 Vesicle coat complex C 88.6 9.2 0.0002 47.1 15.1 8 527-534 444-451 (887)
42 PF09770 PAT1: Topoisomerase I 88.3 0.14 3.1E-06 64.3 0.0 9 712-720 711-719 (808)
43 PF03154 Atrophin-1: Atrophin- 86.5 58 0.0013 41.2 20.4 10 847-856 967-976 (982)
44 KOG3161 Predicted E3 ubiquitin 86.1 12 0.00026 44.8 13.7 7 85-91 513-519 (861)
45 KOG0150 Spliceosomal protein F 86.1 0.35 7.6E-06 52.5 1.4 38 226-263 146-183 (336)
46 KOG3209 WW domain-containing p 85.5 0.79 1.7E-05 54.8 4.0 37 269-305 222-258 (984)
47 KOG2375 Protein interacting wi 85.5 33 0.00071 42.5 17.5 8 72-79 577-584 (756)
48 KOG2199 Signal transducing ada 84.8 2.8 6.1E-05 47.3 7.6 11 57-67 405-415 (462)
49 KOG2893 Zn finger protein [Gen 84.8 12 0.00025 39.7 11.5 15 129-143 168-182 (341)
50 KOG4592 Uncharacterized conser 84.3 4.1 8.9E-05 48.3 8.9 17 129-146 215-231 (728)
51 KOG4368 Predicted RNA binding 83.4 13 0.00029 43.9 12.4 7 240-246 543-549 (757)
52 KOG0144 RNA-binding protein CU 82.8 0.74 1.6E-05 52.2 2.2 33 229-261 451-483 (510)
53 KOG1830 Wiskott Aldrich syndro 82.1 27 0.00058 40.1 13.8 7 16-22 272-278 (518)
54 PF09770 PAT1: Topoisomerase I 79.8 0.57 1.2E-05 59.1 0.0 6 261-266 361-366 (808)
55 KOG4368 Predicted RNA binding 79.6 42 0.0009 40.0 14.6 29 9-39 295-323 (757)
56 KOG1920 IkappaB kinase complex 79.5 1.2E+02 0.0025 39.6 19.3 80 526-606 870-954 (1265)
57 KOG0391 SNF2 family DNA-depend 78.2 88 0.0019 40.7 17.5 12 194-205 1911-1922(1958)
58 KOG3771 Amphiphysin [Intracell 77.8 37 0.0008 39.6 13.5 48 635-682 2-53 (460)
59 KOG2072 Translation initiation 77.7 2E+02 0.0043 36.1 25.3 25 652-676 659-683 (988)
60 PF14643 DUF4455: Domain of un 77.6 1.4E+02 0.0031 35.4 19.1 86 637-723 50-135 (473)
61 KOG4274 Positive cofactor 2 (P 76.3 20 0.00044 42.4 10.9 10 111-120 256-265 (742)
62 KOG4302 Microtubule-associated 75.4 2.1E+02 0.0046 35.3 21.9 93 737-832 160-264 (660)
63 PF07960 CBP4: CBP4; InterPro 75.1 29 0.00063 33.7 10.0 48 523-585 34-81 (128)
64 COG5180 PBP1 Protein interacti 74.8 17 0.00036 42.0 9.6 11 136-146 567-577 (654)
65 KOG2236 Uncharacterized conser 73.0 23 0.0005 41.1 10.2 9 34-42 369-377 (483)
66 KOG3598 Thyroid hormone recept 71.8 18 0.0004 47.0 9.7 29 20-49 1886-1915(2220)
67 PF08580 KAR9: Yeast cortical 71.3 1.1E+02 0.0023 38.2 16.3 50 816-870 240-289 (683)
68 PF02948 Amelogenin: Amelogeni 71.2 53 0.0012 33.3 11.1 15 41-55 82-96 (174)
69 COG5180 PBP1 Protein interacti 70.9 25 0.00053 40.8 9.7 37 33-70 535-571 (654)
70 KOG1923 Rac1 GTPase effector F 69.3 19 0.00041 44.2 8.9 76 696-771 669-750 (830)
71 KOG4167 Predicted DNA-binding 68.7 21 0.00045 43.5 9.0 38 7-44 26-63 (907)
72 PF05879 RHD3: Root hair defec 66.3 3.6E+02 0.0077 34.1 22.4 48 590-639 324-371 (742)
73 PF12905 Glyco_hydro_101: Endo 66.0 2.5 5.3E-05 48.4 0.8 24 280-303 381-404 (425)
74 KOG1676 K-homology type RNA bi 65.8 39 0.00085 40.5 10.4 15 23-37 400-414 (600)
75 KOG1029 Endocytic adaptor prot 65.0 3.6E+02 0.0078 33.8 28.3 14 270-283 231-245 (1118)
76 KOG1891 Proline binding protei 63.4 5.9 0.00013 41.5 2.8 35 268-302 92-126 (271)
77 PF03999 MAP65_ASE1: Microtubu 60.9 11 0.00024 46.2 5.1 84 736-834 322-407 (619)
78 PF06705 SF-assemblin: SF-asse 60.0 2.4E+02 0.0053 30.3 14.8 17 655-671 33-49 (247)
79 KOG4672 Uncharacterized conser 59.4 63 0.0014 37.0 10.1 10 478-487 472-481 (487)
80 KOG4672 Uncharacterized conser 59.1 52 0.0011 37.7 9.3 9 55-63 326-334 (487)
81 KOG0260 RNA polymerase II, lar 55.8 4.9E+02 0.011 34.3 17.5 10 35-44 1448-1457(1605)
82 KOG1070 rRNA processing protei 54.2 1.8E+02 0.0039 38.7 13.9 46 548-601 1443-1488(1710)
83 KOG0905 Phosphoinositide 3-kin 54.1 75 0.0016 41.2 10.4 12 495-506 867-878 (1639)
84 KOG0940 Ubiquitin protein liga 54.1 8 0.00017 44.0 2.2 48 230-279 115-162 (358)
85 PF03999 MAP65_ASE1: Microtubu 54.1 12 0.00025 46.0 3.8 16 589-604 142-157 (619)
86 KOG3582 Mlx interactors and re 53.1 1.1E+02 0.0023 37.6 11.1 6 82-87 416-421 (856)
87 KOG3671 Actin regulatory prote 52.1 3.8E+02 0.0083 31.9 14.9 7 174-180 465-471 (569)
88 KOG2150 CCR4-NOT transcription 51.1 1.3E+02 0.0029 36.1 11.4 40 545-585 54-94 (575)
89 KOG3753 Circadian clock protei 51.0 95 0.0021 39.0 10.4 17 193-209 892-908 (1114)
90 KOG3582 Mlx interactors and re 50.2 3.4E+02 0.0075 33.5 14.5 18 243-260 569-586 (856)
91 KOG1450 Predicted Rho GTPase-a 48.1 18 0.00039 44.0 3.9 106 191-302 237-358 (650)
92 PF06757 Ins_allergen_rp: Inse 47.5 2.4E+02 0.0052 28.8 11.6 166 546-771 2-172 (179)
93 KOG2223 Uncharacterized conser 45.9 75 0.0016 36.9 8.0 33 520-552 232-264 (586)
94 KOG3895 Synaptic vesicle prote 45.6 79 0.0017 35.7 8.0 32 88-121 425-456 (488)
95 KOG4334 Uncharacterized conser 44.0 19 0.00042 41.8 3.2 34 269-302 154-187 (650)
96 KOG2689 Predicted ubiquitin re 43.0 2.1E+02 0.0046 31.4 10.5 60 586-651 85-144 (290)
97 KOG2129 Uncharacterized conser 42.3 2.8E+02 0.006 32.2 11.6 8 721-728 324-331 (552)
98 KOG4264 Nucleo-cytoplasmic pro 41.4 3.2E+02 0.0069 32.6 12.2 8 171-178 613-620 (694)
99 PRK04863 mukB cell division pr 40.7 1.2E+03 0.025 32.2 29.4 93 656-758 442-534 (1486)
100 KOG1915 Cell cycle control pro 39.1 7.5E+02 0.016 29.6 19.7 84 516-599 154-252 (677)
101 KOG0977 Nuclear envelope prote 39.0 7.9E+02 0.017 29.9 24.6 44 689-750 238-281 (546)
102 COG3857 AddB ATP-dependent nuc 37.4 1E+03 0.022 31.2 16.6 99 494-627 379-479 (1108)
103 PRK10263 DNA translocase FtsK; 37.0 2E+02 0.0043 38.3 10.8 6 37-42 743-748 (1355)
104 PHA03246 large tegument protei 36.5 9.2E+02 0.02 34.5 16.4 53 694-750 1726-1780(3095)
105 KOG4822 Predicted nuclear memb 36.0 1E+02 0.0022 39.8 7.6 6 130-135 1828-1833(1906)
106 KOG2150 CCR4-NOT transcription 34.5 6.4E+02 0.014 30.6 13.5 19 656-674 122-140 (575)
107 PF05890 Ebp2: Eukaryotic rRNA 33.8 1.9E+02 0.004 31.9 8.7 115 690-827 33-149 (271)
108 PF05782 ECM1: Extracellular m 33.7 1.4E+02 0.0031 34.9 7.9 13 57-69 40-52 (544)
109 KOG4307 RNA binding protein RB 33.6 2E+02 0.0044 35.4 9.3 12 775-786 879-890 (944)
110 PTZ00266 NIMA-related protein 32.6 1.8E+02 0.0039 37.9 9.5 6 828-833 700-705 (1021)
111 PF04947 Pox_VLTF3: Poxvirus L 31.6 3.2E+02 0.0068 28.0 9.4 119 737-860 31-166 (171)
112 TIGR03300 assembly_YfgL outer 31.4 47 0.001 37.5 3.9 63 237-299 285-347 (377)
113 smart00818 Amelogenin Amelogen 31.1 5.5E+02 0.012 26.1 10.5 99 21-126 41-143 (165)
114 PRK14959 DNA polymerase III su 31.0 2.6E+02 0.0055 34.6 10.0 8 47-54 392-399 (624)
115 KOG4286 Dystrophin-like protei 30.8 17 0.00038 44.3 0.2 29 232-260 353-381 (966)
116 KOG4307 RNA binding protein RB 28.8 5.9E+02 0.013 31.6 12.0 37 115-153 242-278 (944)
117 KOG1016 Predicted DNA helicase 27.9 3.1E+02 0.0068 34.5 9.7 12 113-124 1257-1268(1387)
118 KOG0104 Molecular chaperones G 27.8 1.3E+03 0.028 29.3 14.8 18 609-626 655-672 (902)
119 PRK11138 outer membrane biogen 27.8 65 0.0014 36.8 4.2 63 236-298 299-361 (394)
120 PF13025 DUF3886: Protein of u 27.6 1.4E+02 0.0031 26.0 5.1 20 681-700 41-63 (70)
121 smart00564 PQQ beta-propeller 27.5 59 0.0013 22.9 2.5 22 278-299 12-33 (33)
122 PF13360 PQQ_2: PQQ-like domai 26.8 42 0.00091 34.7 2.2 65 233-298 38-102 (238)
123 cd03490 Topoisomer_IB_N_1 Topo 26.3 1.3E+02 0.0028 31.8 5.5 33 778-810 63-98 (217)
124 cd03489 Topoisomer_IB_N_Ldtopo 26.3 1.3E+02 0.0028 31.7 5.5 33 778-810 63-96 (212)
125 KOG3161 Predicted E3 ubiquitin 26.2 6.3E+02 0.014 31.1 11.6 8 137-144 563-570 (861)
126 KOG0250 DNA repair protein RAD 26.0 1.6E+03 0.035 29.5 20.5 50 591-642 230-279 (1074)
127 KOG3866 DNA-binding protein of 25.8 9.8E+02 0.021 26.9 20.8 22 710-736 204-225 (442)
128 KOG2253 U1 snRNP complex, subu 25.0 64 0.0014 39.2 3.4 20 520-539 272-291 (668)
129 PF07308 DUF1456: Protein of u 23.8 2.3E+02 0.005 24.5 5.8 47 758-808 17-65 (68)
130 KOG3540 Beta amyloid precursor 23.7 8E+02 0.017 29.2 11.5 79 713-811 273-359 (615)
131 PRK11138 outer membrane biogen 23.7 1.1E+02 0.0024 34.9 5.1 69 231-300 120-188 (394)
132 KOG1142 Transcription initiati 23.4 78 0.0017 34.3 3.4 30 38-67 9-39 (258)
133 COG0233 Frr Ribosome recycling 23.4 6.8E+02 0.015 26.1 10.0 71 520-607 109-179 (187)
134 cd07664 BAR_SNX2 The Bin/Amphi 23.3 9.5E+02 0.021 25.8 17.0 51 668-719 178-232 (234)
135 PF05546 She9_MDM33: She9 / Md 22.6 9.4E+02 0.02 25.5 14.2 15 704-718 144-158 (207)
136 PF13360 PQQ_2: PQQ-like domai 22.0 1E+02 0.0022 31.9 4.0 62 234-297 175-237 (238)
137 PF04625 DEC-1_N: DEC-1 protei 22.0 2.8E+02 0.0061 31.0 7.2 19 589-607 336-355 (407)
138 PF11172 DUF2959: Protein of u 21.9 9.5E+02 0.021 25.3 11.3 103 734-836 18-137 (201)
139 cd00216 PQQ_DH Dehydrogenases 21.7 91 0.002 37.0 4.0 60 239-298 364-432 (488)
140 cd08816 CARD_RIG-I_1 Caspase a 21.3 2.2E+02 0.0047 25.9 5.1 15 613-627 4-18 (89)
141 cd09238 V_Alix_like_1 Protein- 21.2 1.2E+03 0.026 26.3 22.0 62 656-718 90-162 (339)
142 TIGR03300 assembly_YfgL outer 21.2 1.1E+02 0.0025 34.4 4.5 68 231-299 105-172 (377)
143 KOG1151 Tousled-like protein k 21.1 1E+03 0.023 28.3 11.7 159 656-844 407-594 (775)
144 COG5293 Predicted ATPase [Gene 21.0 1.4E+03 0.031 27.1 12.8 44 588-631 334-379 (591)
145 KOG3552 FERM domain protein FR 21.0 24 0.00051 44.2 -1.1 54 250-305 2-55 (1298)
146 KOG1070 rRNA processing protei 20.9 7.5E+02 0.016 33.4 11.5 54 480-540 1442-1495(1710)
147 TIGR00496 frr ribosome recycli 20.7 7.5E+02 0.016 25.4 9.9 72 520-608 98-169 (176)
148 PF12238 MSA-2c: Merozoite sur 20.7 1E+03 0.022 25.2 10.8 102 730-839 38-143 (205)
149 KOG4584 Uncharacterized conser 20.6 3.6E+02 0.0077 30.2 7.7 65 712-790 101-168 (348)
150 PF08006 DUF1700: Protein of u 20.6 2.9E+02 0.0064 28.0 7.0 47 595-643 4-50 (181)
151 cd03488 Topoisomer_IB_N_htopoI 20.3 1.9E+02 0.0042 30.5 5.4 34 777-810 64-99 (215)
152 cd00660 Topoisomer_IB_N Topois 20.2 1.9E+02 0.0042 30.5 5.4 33 777-809 64-98 (215)
No 1
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=100.00 E-value=4.1e-67 Score=560.88 Aligned_cols=511 Identities=24% Similarity=0.398 Sum_probs=404.8
Q ss_pred CCCCCCcEEEEcCCCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHHHHHH
Q 002862 227 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAR 306 (873)
Q Consensus 227 ~~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~~ 306 (873)
..+.++|++.+++|||+||||..||+|+|++|.+++...|......+|+++.+.||++||||..|.||+|..|.+.+...
T Consensus 11 ~~~~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~KkVe 90 (590)
T COG5104 11 GEARSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPERKKVE 90 (590)
T ss_pred ccHHHHHHHhhCCCCceEEEecccccccccChHHHhcchHhhhchhhHHHHhhcCCceEEecCccccccccCChhhhccC
Confidence 44568999999999999999999999999999999888777778889999999999999999999999999999876422
Q ss_pred HHHHHhhhcCCCCCCCCCCCCccCCCCCcccCCCCccCCCccchhcccCCcccccccccccCCccccCCCCCCCcccccc
Q 002862 307 EQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSV 386 (873)
Q Consensus 307 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 386 (873)
.-++. . .. .+| ..+.+++-.+++ +
T Consensus 91 ~~~eQ----K-~~--------~~S------------------~i~~ngn~~ait-------------~------------ 114 (590)
T COG5104 91 PIAEQ----K-HD--------ERS------------------MIGGNGNDMAIT-------------D------------ 114 (590)
T ss_pred cHHhh----h-hH--------HHH------------------HhccCCCccccc-------------c------------
Confidence 11110 0 00 000 000000000000 0
Q ss_pred ccccCCCCCccccccccccccccccccccchhHHHhhhcccccccccccCCCCCCCCCchhhhhhhccccccccchhHHh
Q 002862 387 VANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEK 466 (873)
Q Consensus 387 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~~~~k~~~~~e~k 466 (873)
+. ...| +.. .+. ..++.+.. ++
T Consensus 115 -----~e-----~~eP--------~~~--~~~-------~~sQy~~~-----------------------st-------- 136 (590)
T COG5104 115 -----HE-----TSEP--------KYL--LGR-------LMSQYGIT-----------------------ST-------- 136 (590)
T ss_pred -----cc-----cccc--------hhH--HHH-------HHHhhcch-----------------------hH--------
Confidence 00 0000 000 000 00000000 00
Q ss_pred hhhhhhhhhcCHHHHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCccccccCC-hHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 002862 467 TVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRT-LGERKTAFNEYLGQKKKQDAEERRLKL 545 (873)
Q Consensus 467 ~~~~e~~~~~skeeAk~aFk~LL~e~~V~s~~tWe~~~~~i~~DpRy~al~~-~~ERKqlFeeYl~~~~k~E~eekr~~~ 545 (873)
. ..+...|+|+|+.+|+.||++++|+++|+|.++++.+ .|||||.|.+ +.+||.+|++|+.+..+++++++..+.
T Consensus 137 -~--~~v~r~T~E~AEk~F~~~L~e~qVdstw~~~r~i~el-~D~r~~~V~~DP~~rK~~f~kY~~n~~~dq~~~e~n~~ 212 (590)
T COG5104 137 -K--DAVYRLTKEEAEKEFITMLKENQVDSTWPIFRAIEEL-RDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEENKQ 212 (590)
T ss_pred -H--HHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHh-cCccceeecCChHHHHHHHHHHHHhhhhhhhHHHHhHH
Confidence 0 1122358999999999999999999999999999988 8999998875 579999999999999999999999999
Q ss_pred HHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002862 546 KKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLE 625 (873)
Q Consensus 546 kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~~L~kkeke~~~~~rk~~~~ef~~lL~ 625 (873)
.+.+++|.+||..+..|+++|+|.+|+.+|.++|.|+++.++++++++|++|++.|-.-+++-.+..+..++.+|+++|+
T Consensus 213 ~k~~~ef~kml~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr 292 (590)
T COG5104 213 RKYINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLR 292 (590)
T ss_pred HHHHHHHHHHhcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHH
Confidence 99999999999998899999999999999999999999999999999999999999999998888889999999999999
Q ss_pred hccccCCCCcHHHHHHHhhhhhhhhc------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002862 626 SCDFIKANTQWRKVQDRLEADERCSR------LDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLME 699 (873)
Q Consensus 626 ~~~~It~~t~W~ev~~~l~~D~r~~~------l~~~drl~lFed~i~~Leke~ee~kr~~k~~~rR~eRk~Rd~F~~LL~ 699 (873)
+++ -...++|.-.+-.+..++||.. |+..|.|--|.+|++.||++.--.....+.+..+.+|++||+|+.||.
T Consensus 293 ~l~-~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtLLr 371 (590)
T COG5104 293 SLG-SETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLR 371 (590)
T ss_pred hcC-cccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 886 3567799966667888888854 567888899999999999998766666677778899999999999999
Q ss_pred HHhhcCccCCCCChHHHHHHHhcCchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCHHH
Q 002862 700 ADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFED 779 (873)
Q Consensus 700 E~~k~g~I~~~t~W~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~veeL~k~~~e~k~~i~d~Lk~~~i~~~s~wt~ee 779 (873)
++.-.|+|+..++|+++|++|+|||||++|+ |++||+|+|||+|+|-+|+..|...|+.+.+.+.-+.|..+.+-..++
T Consensus 372 ~l~~~~ki~~R~kwk~~yp~iKddprfLnlL-Gr~gsspldlf~D~ivDlenmy~~~r~~~~~~~~~~qis~~d~~~vde 450 (590)
T COG5104 372 KLYSEGKIYYRMKWKNAYPLIKDDPRFLNLL-GRTGSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISPTDRRAVDE 450 (590)
T ss_pred HhhhhhhhhhhhhhhhhcccccCCHHHHHHh-ccCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCccccchHH
Confidence 9999999999999999999999999999997 899999999999999999999999999998888878888776666677
Q ss_pred HHHHhh-----hcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhchhhhhhccCCcccch
Q 002862 780 FKASVL-----EDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDE----FFDLLCSVKVRYLQLLHGKIADNF 850 (873)
Q Consensus 780 ~~~~l~-----ed~r~~~l~~~nlk~iFe~li~r~kEKe~ee~rk~~r~~~~----F~~lL~~~k~It~~~~~~~~~d~~ 850 (873)
|.+.+. .+..|.+++.+++.+|.|.+|.+..||-.......+|+.+. |.-||.. ++ ...+.+..++
T Consensus 451 i~~~~~Ek~eE~e~~~d~v~kE~is~i~D~~I~qr~EkIqqKl~N~R~~le~~K~~~~lL~q~----t~-~~t~k~k~st 525 (590)
T COG5104 451 IFEAIAEKKEEGEIKFDKVDKEDISLIVDGLIKQRNEKIQQKLQNERRILEQKKHYFWLLLQR----TY-TKTGKPKPST 525 (590)
T ss_pred HHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHhHHH----HH-hccCCCCcch
Confidence 655543 34457788999999999999988766655444444555443 4444433 22 2357889999
Q ss_pred HHHHhhcChHHH
Q 002862 851 WRVAKSSVPLEM 862 (873)
Q Consensus 851 ~~~~~~~~~~~~ 862 (873)
|+.+...|.+.+
T Consensus 526 ~D~~~k~L~Es~ 537 (590)
T COG5104 526 WDLASKELGESL 537 (590)
T ss_pred HHHHHHHHhHhH
Confidence 998877665543
No 2
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=100.00 E-value=2.8e-56 Score=486.80 Aligned_cols=345 Identities=28% Similarity=0.508 Sum_probs=290.9
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH
Q 002862 476 ANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKM 555 (873)
Q Consensus 476 ~skeeAk~aFk~LL~e~~V~s~~tWe~~~~~i~~DpRy~al~~~~ERKqlFeeYl~~~~k~E~eekr~~~kkare~F~~l 555 (873)
-..||+...|++||+++||.++++|++.+.+|+.||||.+|.. .+|+++|+.||+.+.+.++.+++.+.+.|+++|.+|
T Consensus 239 vplEer~kqFkEMLkERgVsafStWEkel~KivfDpR~~~l~s-~~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kL 317 (617)
T KOG0155|consen 239 VPLEERRKQFKEMLKERGVSAFSTWEKELPKIVFDPRYLLLNS-GERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKL 317 (617)
T ss_pred CCHHHHHHHHHHHHHhcCCcccchHHHhhhhccCCcceeccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999986 599999999999999999999999999999999999
Q ss_pred HHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCc
Q 002862 556 LEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQ 635 (873)
Q Consensus 556 Lee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~~L~kkeke~~~~~rk~~~~ef~~lL~~~~~It~~t~ 635 (873)
|.++ .++..+.|+.|..++.+|+||++|...+||+.+|++||..|+++++++.+..+++...+|.+||.+.. |+..+.
T Consensus 318 L~e~-~~n~rs~y~~F~~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~~-l~~~S~ 395 (617)
T KOG0155|consen 318 LAEA-ELNGRSSYSSFKSKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQE-LTRKSK 395 (617)
T ss_pred HHhC-cCCcccchHHHHHHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhhh
Confidence 9997 68888999999999999999999998899999999999999999999989888999999999999876 889999
Q ss_pred HHHHHHHhhhhhhhhcCCh-hhHHHHHHHHHHHHHHH------HHHHHHHH-------HHHHH---------HHHH----
Q 002862 636 WRKVQDRLEADERCSRLDK-MDRLEIFQEYLNDLEKE------EEEQRKIQ-------KEELS---------KTER---- 688 (873)
Q Consensus 636 W~ev~~~l~~D~r~~~l~~-~drl~lFed~i~~Leke------~ee~kr~~-------k~~~r---------R~eR---- 688 (873)
|+++++.|++++||.+|+. ++|+.+|.+||.+|..+ .+.+++++ ++... .++|
T Consensus 396 ws~tk~~le~eery~aldsSs~re~lf~eyia~l~~~~~sd~e~er~~r~ea~lrererev~k~~~~q~~e~~rerek~k 475 (617)
T KOG0155|consen 396 WSKTKDTLEDEERYIALDSSSTRESLFREYIANLGDETASDIEQEREKRLEAQLREREREVEKELGNQLRERTREREKQK 475 (617)
T ss_pred hhHHHHHhcccHHHhhhcccchHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 79999999999998432 11111111 10000 0111
Q ss_pred --HhHHHHHHHHHHHhhcCccCCCCChHHHHHHHhcCchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002862 689 --KNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKL 766 (873)
Q Consensus 689 --k~Rd~F~~LL~E~~k~g~I~~~t~W~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~veeL~k~~~e~k~~i~d~Lk~ 766 (873)
.+-+.|++||.+++++.+. +|.|..++|..|+||.+. ..+.......||.|||+.|.++.++++..++|-.
T Consensus 476 ~~e~~~~y~all~d~irs~e~----sw~e~rrilrkd~r~as~-~~le~~~keklf~dhiksl~~k~re~f~qllde~-- 548 (617)
T KOG0155|consen 476 RGEAEDTYRALLIDLIRSTEN----SWHEARRILRKDERYASC-DMLEKTRKEKLFDDHIKSLERKRREAFFQLLDEH-- 548 (617)
T ss_pred HHHHHHHHHHHHHHHHhCccc----chHHhHHHhhcccccccC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 1347899999999987654 899999999999998764 3566677788999999999887777666544432
Q ss_pred cCcccCCCCCHHHHHHHhhhcCCCCCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhc
Q 002862 767 RKITLSSTWTFEDFKASVLEDATSPPISDVNL--KLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKVRYLQLL 842 (873)
Q Consensus 767 ~~i~~~s~wt~ee~~~~l~ed~r~~~l~~~nl--k~iFe~li~r~kEKe~ee~rk~~r~~~~F~~lL~~~k~It~~~~ 842 (873)
..|+.++.| .|.+++|.++.+|.+|....+ +.-|.+|++ ++++.+.++|+.||++++.|||++.
T Consensus 549 ~~it~~~~w--~e~kkii~e~~t~~k~~ss~rk~~r~f~d~~~----------~~~~~~~d~fr~~l~etk~it~~sk 614 (617)
T KOG0155|consen 549 EKITPMMRW--REAKKIIQEEETFVKIASSERKVERDFRDWQE----------RRHDHLTDEFREMLSETKIITHKSK 614 (617)
T ss_pred hhcchHHHH--HHhhHHHhhhHHHHHHHhhhhhhhccHHHHHH----------HHHHHHHHHHHHHHHhhhHHhhhhh
Confidence 568888888 689999998888877755443 345666655 4778899999999999999998554
No 3
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=100.00 E-value=2.7e-48 Score=439.90 Aligned_cols=382 Identities=39% Similarity=0.605 Sum_probs=353.4
Q ss_pred hhhcCHHHHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Q 002862 473 FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDY 552 (873)
Q Consensus 473 ~~~~skeeAk~aFk~LL~e~~V~s~~tWe~~~~~i~~DpRy~al~~~~ERKqlFeeYl~~~~k~E~eekr~~~kkare~F 552 (873)
+.|++|++|+.+|+.||++++|++.|+|+++++.|++|+||+++.++.+++++|+.|..++.+.+.++.....++++++|
T Consensus 20 ~~~~~k~~a~~~f~~~lrd~~v~s~~n~~q~~~~~~~d~~~~~~~~~~~~kqafn~~~~qr~~d~~~~~~~~~kk~k~d~ 99 (463)
T KOG0152|consen 20 VRFKTKEEAKRAFKELLRDANVPSNWNWDQAVRLISNDKRYNALRDSSERKQAFNGYTLQRGRDRVLEESLDVKKAKEDF 99 (463)
T ss_pred HHhhccHHhHHHHHHHHhhcCCCCCCCHHHHHHhccCCCccccccCchhhHHhhhhhhhhhhhhhhhhhhhhhhhhHHHH
Confidence 77999999999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred HHHHHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 002862 553 KKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKA 632 (873)
Q Consensus 553 ~~lLee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~~L~kkeke~~~~~rk~~~~ef~~lL~~~~~It~ 632 (873)
..||.++..+..++.|.++...|..+|+|.++... +++.+|++||.+|.+++++++.+.+++++.++..+|..+..+..
T Consensus 100 ~~~l~e~~~~~~~~~~~~~~~~fa~~p~~~~~~~~-~~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~~~~~~~~~~ 178 (463)
T KOG0152|consen 100 LQMLQEESKYKSSTEWKTAKELFAGDPRWSEHISE-DGRKIYENCITELSQREKEKKLEDRKRNLAADKHLLNSESSIGL 178 (463)
T ss_pred HHhHhhcccccccccccccccccccccchhhccch-hhHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcchhccccccc
Confidence 99999999999999999999999999999998765 99999999999999999998888888999999999998878899
Q ss_pred CCcHHHHHHHhhhhhhhhc-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCccCCCC
Q 002862 633 NTQWRKVQDRLEADERCSR-LDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKT 711 (873)
Q Consensus 633 ~t~W~ev~~~l~~D~r~~~-l~~~drl~lFed~i~~Leke~ee~kr~~k~~~rR~eRk~Rd~F~~LL~E~~k~g~I~~~t 711 (873)
.++|++++..+..|++|.. |++.|++..|++||..+++++.+. ..++.+.+|++|++||+|+.||.++++.|+|+++|
T Consensus 179 ~~~w~~~~~~~~~~~~~~~~ldked~l~~~e~~i~~~e~e~~~~-~~~~~~~~~~~Rk~rD~~~~lL~~~~~~~ki~s~T 257 (463)
T KOG0152|consen 179 DRDWRRAQGRLTEDSGFSEDLDKEDALINFEEHIKDLEKEEDEK-EQERKRNKRQERKNRDAFRSLLQELPATGKITSTT 257 (463)
T ss_pred cchHHHHhhhhhcccccccccchHHhhhhHHHHHhHHHHhhhhh-cchhhhhhhhhhhhhhhhhhHHHhhcccccccccc
Confidence 9999999999999999998 999999999999999999988766 33347788999999999999999999999999999
Q ss_pred ChHHHHHHHhcCchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCHHHHHHHhhhcCCCC
Q 002862 712 NWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSP 791 (873)
Q Consensus 712 ~W~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~veeL~k~~~e~k~~i~d~Lk~~~i~~~s~wt~ee~~~~l~ed~r~~ 791 (873)
.|.++++.|++|+||..++ |.+|++|+|||+|+|+.|+..+...+..|++++++..|.+....++.+|..++.++..+.
T Consensus 258 ~w~~~~~~i~~~~r~~~~l-n~sgstp~dlf~d~ve~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
T KOG0152|consen 258 GWEDLFPSIKDDPRSANAL-NQSGSTPLDLFEDPVEPLEPRYYEYPPLIKDCLKERQIELSAQTSLQEFNSVLSKDKENE 336 (463)
T ss_pred CCccccchhcCCcchHhhc-CCCCCChhhcccccccccccccccchHHHHHHHHhhcccccchhhHHHhhhhhhhhhccc
Confidence 9999999999999998775 899999999999999999999999999999999999999999998899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhchhhhhhccCCcccchHHHHhhcChHHHHHh
Q 002862 792 PISDVNLKLIFDDLLIKVKEKEEKEA----KKRKRLEDEFFDLLCSVKVRYLQLLHGKIADNFWRVAKSSVPLEMKAS 865 (873)
Q Consensus 792 ~l~~~nlk~iFe~li~r~kEKe~ee~----rk~~r~~~~F~~lL~~~k~It~~~~~~~~~d~~~~~~~~~~~~~~~~~ 865 (873)
.++..+++++|+.|+.+++++++++. ++.++...+|+.||+.++.|. ..++|+.++..+.+.-...
T Consensus 337 ~~~~~~~k~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~f~~~l~~~~~~~--------~~~~~~~a~p~~~~s~~~~ 406 (463)
T KOG0152|consen 337 KVDAASMKLVFQSLIEKAKSKIPERKRIENRRLRRHANNFRNLLKSLNGIP--------KSSTWDSAKPLVEDSEEFS 406 (463)
T ss_pred cccHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCc--------ccCCchhhccccccChhhh
Confidence 99999999999999999988776554 578999999999999977554 6777888877766654443
No 4
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=100.00 E-value=6.8e-36 Score=327.36 Aligned_cols=307 Identities=25% Similarity=0.419 Sum_probs=243.4
Q ss_pred cccCCCCCCCCCchhhh--hhhccccccc-cchhHHhhhhhhhhhh----------cCHHHHHHHHHHHHHhcCCCCCCc
Q 002862 433 DLVGASDKVPPPVTEET--RKDAVRGEKV-SDALEEKTVEQEHFAY----------ANKLEAKNAFKALLESANVGSDWT 499 (873)
Q Consensus 433 ~~~~~~~~~s~~~~~e~--~~~~~~~~k~-~~~~e~k~~~~e~~~~----------~skeeAk~aFk~LL~e~~V~s~~t 499 (873)
..|+...|++++.+||. .+.+.+..+. ....++++++++.+.- +...+|++.|..||.+..++..++
T Consensus 249 kEMLkERgVsafStWEkel~KivfDpR~~~l~s~~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kLL~e~~~n~rs~ 328 (617)
T KOG0155|consen 249 KEMLKERGVSAFSTWEKELPKIVFDPRYLLLNSGERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKLLAEAELNGRSS 328 (617)
T ss_pred HHHHHhcCCcccchHHHhhhhccCCcceeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcccc
Confidence 34667899999999954 4555555554 5666899998876641 223479999999999999999999
Q ss_pred HHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhcccCCCcccHHHHHHHhcCCh
Q 002862 500 WDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDE 579 (873)
Q Consensus 500 We~~~~~i~~DpRy~al~~~~ERKqlFeeYl~~~~k~E~eekr~~~kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dp 579 (873)
|..+.+++.+|+||.++....+|..+||+|+..+++.++++++.+.++++.+|..||+++ .|+..+.|++++..+.+++
T Consensus 329 y~~F~~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~-~l~~~S~ws~tk~~le~ee 407 (617)
T KOG0155|consen 329 YSSFKSKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQ-ELTRKSKWSKTKDTLEDEE 407 (617)
T ss_pred hHHHHHHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccc-hhhhhhhhhHHHHHhcccH
Confidence 999999999999999999889999999999999999999999999999999999999987 4999999999999999999
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHHH-------HH----------------------------HHHHHHHHHHHHHHHHHh
Q 002862 580 RFKALERERDRKDMFDDHLDELKQK-------ER----------------------------AKAQEERKRNIIEYRKFL 624 (873)
Q Consensus 580 rfkav~~e~eRe~lF~eyi~~L~kk-------ek----------------------------e~~~~~rk~~~~ef~~lL 624 (873)
||.+|.+...|+.+|.+||..|... ++ +..+.++..+.+.|++||
T Consensus 408 ry~aldsSs~re~lf~eyia~l~~~~~sd~e~er~~r~ea~lrererev~k~~~~q~~e~~rerek~k~~e~~~~y~all 487 (617)
T KOG0155|consen 408 RYIALDSSSTRESLFREYIANLGDETASDIEQEREKRLEAQLREREREVEKELGNQLRERTREREKQKRGEAEDTYRALL 487 (617)
T ss_pred HHhhhcccchHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998889999999999987532 00 011122333556788998
Q ss_pred hhccccC-CCCcHHHHHHHhhhhhhhhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002862 625 ESCDFIK-ANTQWRKVQDRLEADERCSRL---DKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEA 700 (873)
Q Consensus 625 ~~~~~It-~~t~W~ev~~~l~~D~r~~~l---~~~drl~lFed~i~~Leke~ee~kr~~k~~~rR~eRk~Rd~F~~LL~E 700 (873)
-++ |. ....|.+.+..|+.|+||.+. ++.+.+.||.|||+.|+ ||.|++|+.||++
T Consensus 488 ~d~--irs~e~sw~e~rrilrkd~r~as~~~le~~~keklf~dhiksl~------------------~k~re~f~qllde 547 (617)
T KOG0155|consen 488 IDL--IRSTENSWHEARRILRKDERYASCDMLEKTRKEKLFDDHIKSLE------------------RKRREAFFQLLDE 547 (617)
T ss_pred HHH--HhCcccchHHhHHHhhcccccccCcccchHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHh
Confidence 654 33 567999999999999999875 45678899999999885 4568999999999
Q ss_pred HhhcCccCCCCChHHHHHHHhcCchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002862 701 DVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRK 768 (873)
Q Consensus 701 ~~k~g~I~~~t~W~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~veeL~k~~~e~k~~i~d~Lk~~~ 768 (873)
+. .|++++.|.|...+|+.+++|+.++. +.--...=|.|+++.. +.-...+++.+|++..
T Consensus 548 ~~---~it~~~~w~e~kkii~e~~t~~k~~s--s~rk~~r~f~d~~~~~---~~~~~d~fr~~l~etk 607 (617)
T KOG0155|consen 548 HE---KITPMMRWREAKKIIQEEETFVKIAS--SERKVERDFRDWQERR---HDHLTDEFREMLSETK 607 (617)
T ss_pred hh---hcchHHHHHHhhHHHhhhHHHHHHHh--hhhhhhccHHHHHHHH---HHHHHHHHHHHHHhhh
Confidence 84 69999999999999999999999862 2111123477766543 3233334445554433
No 5
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=99.91 E-value=5.8e-23 Score=221.86 Aligned_cols=199 Identities=15% Similarity=0.185 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHhc-CCCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHh
Q 002862 480 EAKNAFKALLESA-NVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEE 558 (873)
Q Consensus 480 eAk~aFk~LL~e~-~V~s~~tWe~~~~~i~~DpRy~al~~~~ERKqlFeeYl~~~~k~E~eekr~~~kkare~F~~lLee 558 (873)
.-+++|.+||..+ .|.+++.|-.+.+.|...|-|.++....+++|+|.+|+..+...|+.-++.+.+.|...|..+|+.
T Consensus 214 k~~~ef~kml~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr~ 293 (590)
T COG5104 214 KYINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLRS 293 (590)
T ss_pred HHHHHHHHHhcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHHh
Confidence 3578899999964 899999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccCCCcccHHHHHHHhcCChhhhhcC-----ChHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh
Q 002862 559 SVELTSSTRWSKAVTMFENDERFKALE-----RERDRKDMFDDHLDELKQKERA-------KAQEERKRNIIEYRKFLES 626 (873)
Q Consensus 559 ~~~i~~~trW~~a~~~~~~Dprfkav~-----~e~eRe~lF~eyi~~L~kkeke-------~~~~~rk~~~~ef~~lL~~ 626 (873)
. ....+++|.-..-.|..++||.+.. +-.|..--|.+|++.|+++-.- ++.+..+.++++|+.||+.
T Consensus 294 l-~~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtLLr~ 372 (590)
T COG5104 294 L-GSETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLRK 372 (590)
T ss_pred c-CcccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5 4667899998888999999997532 3346666677777777665221 1222335678999999986
Q ss_pred c---cccCCCCcHHHHHHHhhhhhhhhcCCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Q 002862 627 C---DFIKANTQWRKVQDRLEADERCSRLDK---MDRLEIFQEYLNDLEKEEEEQRKIQ 679 (873)
Q Consensus 627 ~---~~It~~t~W~ev~~~l~~D~r~~~l~~---~drl~lFed~i~~Leke~ee~kr~~ 679 (873)
. +.|+..++|.+++..|.+||||.+|.+ +.+|+||.|+|.+|++-+.+.++..
T Consensus 373 l~~~~ki~~R~kwk~~yp~iKddprfLnlLGr~gsspldlf~D~ivDlenmy~~~r~~~ 431 (590)
T COG5104 373 LYSEGKIYYRMKWKNAYPLIKDDPRFLNLLGRTGSSPLDLFFDFIVDLENMYGFARRSY 431 (590)
T ss_pred hhhhhhhhhhhhhhhhcccccCCHHHHHHhccCCCChHHHHHHHHHhHHHHHHHHHHHH
Confidence 4 467788899999999999999999864 7899999999999998777655443
No 6
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=99.73 E-value=1.6e-17 Score=189.49 Aligned_cols=350 Identities=18% Similarity=0.293 Sum_probs=262.5
Q ss_pred CCCCCCCchhhhhhhccccccc----cchhHHhhhhhhhhhh----------cCHHHHHHHHHHHHHhc-CCCCCCcHHH
Q 002862 438 SDKVPPPVTEETRKDAVRGEKV----SDALEEKTVEQEHFAY----------ANKLEAKNAFKALLESA-NVGSDWTWDQ 502 (873)
Q Consensus 438 ~~~~s~~~~~e~~~~~~~~~k~----~~~~e~k~~~~e~~~~----------~skeeAk~aFk~LL~e~-~V~s~~tWe~ 502 (873)
+.++.+.++|+.-.......+- ..+.++++.+..+... ....++++.|.+||.++ .+.+...|.+
T Consensus 38 d~~v~s~~n~~q~~~~~~~d~~~~~~~~~~~~kqafn~~~~qr~~d~~~~~~~~~kk~k~d~~~~l~e~~~~~~~~~~~~ 117 (463)
T KOG0152|consen 38 DANVPSNWNWDQAVRLISNDKRYNALRDSSERKQAFNGYTLQRGRDRVLEESLDVKKAKEDFLQMLQEESKYKSSTEWKT 117 (463)
T ss_pred hcCCCCCCCHHHHHHhccCCCccccccCchhhHHhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhHhhcccccccccccc
Confidence 4456667777654444444432 5556666666554432 22346899999999976 7899999999
Q ss_pred HHHHhhcCccccccCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhh
Q 002862 503 ALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK 582 (873)
Q Consensus 503 ~~~~i~~DpRy~al~~~~ERKqlFeeYl~~~~k~E~eekr~~~kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfk 582 (873)
+...+..||+|.+.... +++.+|+.|+.++.+.+++++..++++...+|..+|..+..+...++|..+..++..+++|.
T Consensus 118 ~~~~fa~~p~~~~~~~~-~~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 196 (463)
T KOG0152|consen 118 AKELFAGDPRWSEHISE-DGRKIYENCITELSQREKEKKLEDRKRNLAADKHLLNSESSIGLDRDWRRAQGRLTEDSGFS 196 (463)
T ss_pred cccccccccchhhccch-hhHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcchhccccccccchHHHHhhhhhcccccc
Confidence 99999999999998764 89999999999999999998888888899999999998778999999999999999999999
Q ss_pred h-cCChHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhcc---ccCCCCcHHHHHHHhhhhhhhhcC
Q 002862 583 A-LERERDRKDMFDDHLDELKQKERAKAQ------EERKRNIIEYRKFLESCD---FIKANTQWRKVQDRLEADERCSRL 652 (873)
Q Consensus 583 a-v~~e~eRe~lF~eyi~~L~kkeke~~~------~~rk~~~~ef~~lL~~~~---~It~~t~W~ev~~~l~~D~r~~~l 652 (873)
. +++ .++...|++||..+.+++.++.+ ...+++++.|+.||.+.. .|++.|.|.++...+..|++|..+
T Consensus 197 ~~ldk-ed~l~~~e~~i~~~e~e~~~~~~~~~~~~~~~Rk~rD~~~~lL~~~~~~~ki~s~T~w~~~~~~i~~~~r~~~~ 275 (463)
T KOG0152|consen 197 EDLDK-EDALINFEEHIKDLEKEEDEKEQERKRNKRQERKNRDAFRSLLQELPATGKITSTTGWEDLFPSIKDDPRSANA 275 (463)
T ss_pred cccch-HHhhhhHHHHHhHHHHhhhhhcchhhhhhhhhhhhhhhhhhHHHhhccccccccccCCccccchhcCCcchHhh
Confidence 8 655 49999999999999877554322 233567788999998753 799999999999999999999876
Q ss_pred C---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCccCCCCChHHHHHHHhcCchhhhh
Q 002862 653 D---KMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAV 729 (873)
Q Consensus 653 ~---~~drl~lFed~i~~Leke~ee~kr~~k~~~rR~eRk~Rd~F~~LL~E~~k~g~I~~~t~W~e~~~~ikdD~rf~~l 729 (873)
. +..++++|++++..|+....+.+.+.+ +.++.+. ..+.+.+...+|...+.++..+..+
T Consensus 276 ln~sgstp~dlf~d~ve~l~~~~~~~~~~i~-----------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (463)
T KOG0152|consen 276 LNQSGSTPLDLFEDPVEPLEPRYYEYPPLIK-----------DCLKERQ------IELSAQTSLQEFNSVLSKDKENEKV 338 (463)
T ss_pred cCCCCCChhhcccccccccccccccchHHHH-----------HHHHhhc------ccccchhhHHHhhhhhhhhhccccc
Confidence 5 467999999999999876555443332 2223222 2345556667788888888876654
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHH----H-------HHHHHHHHHHHhcC-cccCCCCCHHHHHHHhhhcCCCCCCC-hh
Q 002862 730 ASNTSGSTPKDLFEDVVEELQKQF----Q-------EDKTRIKDAVKLRK-ITLSSTWTFEDFKASVLEDATSPPIS-DV 796 (873)
Q Consensus 730 ~~~~~gS~~ldLF~d~veeL~k~~----~-------e~k~~i~d~Lk~~~-i~~~s~wt~ee~~~~l~ed~r~~~l~-~~ 796 (873)
. .-.....|..+++...... + .+...+..+|+... +.+.++| +.++.++.+..+|..|. .+
T Consensus 339 ~----~~~~k~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~f~~~l~~~~~~~~~~~~--~~a~p~~~~s~~~~~~~~e~ 412 (463)
T KOG0152|consen 339 D----AASMKLVFQSLIEKAKSKIPERKRIENRRLRRHANNFRNLLKSLNGIPKSSTW--DSAKPLVEDSEEFSALGSEE 412 (463)
T ss_pred c----HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCc--hhhccccccChhhhhcCCcc
Confidence 2 2344555666666543221 1 12224566676654 7778888 89999999999999884 46
Q ss_pred hHHHHHHHHHHHHHHH
Q 002862 797 NLKLIFDDLLIKVKEK 812 (873)
Q Consensus 797 nlk~iFe~li~r~kEK 812 (873)
+++.+|..++..+.++
T Consensus 413 ~~~~~~~~~~t~~~~~ 428 (463)
T KOG0152|consen 413 SRVPGFPDYVTPLVST 428 (463)
T ss_pred ccceeccccccchhhc
Confidence 7788999999887653
No 7
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=99.14 E-value=6.9e-11 Score=95.53 Aligned_cols=50 Identities=32% Similarity=0.616 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCcccccc-CChHHHHHHHHHH
Q 002862 480 EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGAL-RTLGERKTAFNEY 529 (873)
Q Consensus 480 eAk~aFk~LL~e~~V~s~~tWe~~~~~i~~DpRy~al-~~~~ERKqlFeeY 529 (873)
+|+++|++||++++|+++++|+.+++.|.+||||.+| .+..+|+++|++|
T Consensus 1 ~a~~~F~~lL~e~~i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHKITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTTS-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 5889999999999999999999999999999999999 8889999999998
No 8
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=99.03 E-value=3e-10 Score=93.21 Aligned_cols=52 Identities=42% Similarity=0.615 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCC-CCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHH
Q 002862 480 EAKNAFKALLESANVG-SDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLG 531 (873)
Q Consensus 480 eAk~aFk~LL~e~~V~-s~~tWe~~~~~i~~DpRy~al~~~~ERKqlFeeYl~ 531 (873)
+|+++|+.||++.++. ++++|+.+.+.|.+||||.+|.+..+|+++|++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcChHHHHHHHHHHHh
Confidence 6889999999999876 999999999999999999999999999999999996
No 9
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=98.89 E-value=3.3e-09 Score=85.72 Aligned_cols=50 Identities=30% Similarity=0.688 Sum_probs=46.4
Q ss_pred HhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhc-CChHHHHHHHHHH
Q 002862 547 KARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKAL-ERERDRKDMFDDH 597 (873)
Q Consensus 547 kare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav-~~e~eRe~lF~ey 597 (873)
+++++|++||+++. |+++++|.++.++|.+||||.+| .+..+|++||++|
T Consensus 1 ~a~~~F~~lL~e~~-i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHK-ITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTT-S-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC-CCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 57899999999985 99999999999999999999999 8889999999998
No 10
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=98.85 E-value=4.4e-09 Score=86.26 Aligned_cols=53 Identities=38% Similarity=0.756 Sum_probs=50.1
Q ss_pred HhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHH
Q 002862 547 KARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLD 599 (873)
Q Consensus 547 kare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~ 599 (873)
+++++|+.||.+...++++++|+++.++|.+||||.++.+..+|+++|++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcChHHHHHHHHHHHh
Confidence 57899999999987788999999999999999999999999999999999986
No 11
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=98.73 E-value=2.3e-07 Score=110.06 Aligned_cols=221 Identities=17% Similarity=0.301 Sum_probs=148.0
Q ss_pred HHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 002862 546 KKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK---ALERERDRKDMFDDHLDELKQKERAKAQEERKR-NIIEYR 621 (873)
Q Consensus 546 kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfk---av~~e~eRe~lF~eyi~~L~kkeke~~~~~rk~-~~~ef~ 621 (873)
--+++.|..||... +...+.|..+...+.++|.|. .|...+-..++|+.||.+|++++...+++..-- .-.+|.
T Consensus 52 ~~~k~~f~~lvs~~--v~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~~k~~~~~~r~~~~~~~l~~~f~ 129 (1100)
T KOG4271|consen 52 LTAKDKFETLVSQA--VPLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISELKEEHIINRRRTYVPRLPEAFQ 129 (1100)
T ss_pred hhHHHHHHHHHHHH--hHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999864 455667999999999999987 455566778999999999999887655444332 336788
Q ss_pred HHhhhccccCCCCcHHHHHHHhhhhhhhhc----------------------------CChhhHHHHHHHHHHHHHHHHH
Q 002862 622 KFLESCDFIKANTQWRKVQDRLEADERCSR----------------------------LDKMDRLEIFQEYLNDLEKEEE 673 (873)
Q Consensus 622 ~lL~~~~~It~~t~W~ev~~~l~~D~r~~~----------------------------l~~~drl~lFed~i~~Leke~e 673 (873)
.||...+.| ...|.+++++++..+.|.. |+-.++..+|+.|+..|..+
T Consensus 130 ~~l~~ld~~--e~~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n~-- 205 (1100)
T KOG4271|consen 130 VLLPNLDEI--EHLWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRNE-- 205 (1100)
T ss_pred HhcccHHHH--HHHHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhhh--
Confidence 888766544 4578899998888776642 12234577888888766432
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCccCCCCChHHHHHHHhcCchhhhhhcCCCCCChHHHHHHHHHHHH---
Q 002862 674 EQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQ--- 750 (873)
Q Consensus 674 e~kr~~k~~~rR~eRk~Rd~F~~LL~E~~k~g~I~~~t~W~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~veeL~--- 750 (873)
+++ -..|++|+++|.+ ...|+.+-.|+++.+.|.++..|..+ ..+.-.+.|..|+.+|-
T Consensus 206 -r~~----------i~~~~~fke~l~e---~~~itpg~P~eea~~~~~n~d~~qkl----te~v~t~vy~r~qk~i~eka 267 (1100)
T KOG4271|consen 206 -RKR----------IEMRRAFKENLEE---SPFITPGKPWEEARSFIMNEDFYQKL----TESVYTDVYGRHQKQIIEKA 267 (1100)
T ss_pred -hhh----------HHHHHHHHHhhhc---CCccCCCCCHHHhhchhhhhhHHHhc----ccceeeccchHHHHHHHHHH
Confidence 111 1357899999998 47899999999999999999999876 34566678855555444
Q ss_pred -HHHHHHHHHHHHHHHhcCcccC-CCCCHHHHHHHhhhcCCC
Q 002862 751 -KQFQEDKTRIKDAVKLRKITLS-STWTFEDFKASVLEDATS 790 (873)
Q Consensus 751 -k~~~e~k~~i~d~Lk~~~i~~~-s~wt~ee~~~~l~ed~r~ 790 (873)
+++++.+.+.-.++.+...... .+-..+.+..++..+.||
T Consensus 268 k~~~qE~l~e~s~Lf~d~~~~a~~fsdKmeti~d~le~e~ry 309 (1100)
T KOG4271|consen 268 KEEFQELLLEYSELFYDLELDAKPFSDKMETIQDVLEEEARY 309 (1100)
T ss_pred HHHHHHHHHHHhhhhhhhhhccccccchhHHHHHHHHhHHHH
Confidence 4444433333223332222221 122345555555555444
No 12
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=98.57 E-value=2.3e-06 Score=101.82 Aligned_cols=229 Identities=18% Similarity=0.358 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCccccc---cCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHhHHHHHHH
Q 002862 480 EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGA---LRTLGERKTAFNEYLGQKKKQDAEERRLK-LKKARDDYKKM 555 (873)
Q Consensus 480 eAk~aFk~LL~e~~V~s~~tWe~~~~~i~~DpRy~a---l~~~~ERKqlFeeYl~~~~k~E~eekr~~-~kkare~F~~l 555 (873)
-|+.-|-.||... |+....|.++..+|-..|.|.- |.....-+.+|+.||.+++.++...++.. .-.+-++|..|
T Consensus 53 ~~k~~f~~lvs~~-v~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~~k~~~~~~r~~~~~~~l~~~f~~~ 131 (1100)
T KOG4271|consen 53 TAKDKFETLVSQA-VPLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISELKEEHIINRRRTYVPRLPEAFQVL 131 (1100)
T ss_pred hHHHHHHHHHHHH-hHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3788899988754 2233349999999999998873 44445556799999999998887766543 45678899999
Q ss_pred HHhcccCCCcccHHHHHHHhcCChhhhhc---------------C------------ChHHHHHHHHHHHHHHHHHHHHH
Q 002862 556 LEESVELTSSTRWSKAVTMFENDERFKAL---------------E------------RERDRKDMFDDHLDELKQKERAK 608 (873)
Q Consensus 556 Lee~~~i~~~trW~~a~~~~~~Dprfkav---------------~------------~e~eRe~lF~eyi~~L~kkeke~ 608 (873)
|....+|. .-|.+++++++..|.|.-+ . ..-+.+++|+.|+..|..+.
T Consensus 132 l~~ld~~e--~~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n~r--- 206 (1100)
T KOG4271|consen 132 LPNLDEIE--HLWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRNER--- 206 (1100)
T ss_pred cccHHHHH--HHHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhhhh---
Confidence 87654554 4566999988888877521 0 11245888999888887642
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCcHHHHHHHhhhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002862 609 AQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTER 688 (873)
Q Consensus 609 ~~~~rk~~~~ef~~lL~~~~~It~~t~W~ev~~~l~~D~r~~~l~~~drl~lFed~i~~Leke~ee~kr~~k~~~rR~eR 688 (873)
.+-..+++|+..|++..+|+.+-.|.++...|+++.-|+.+....-.++|..|.++|- -
T Consensus 207 ---~~i~~~~~fke~l~e~~~itpg~P~eea~~~~~n~d~~qklte~v~t~vy~r~qk~i~------------------e 265 (1100)
T KOG4271|consen 207 ---KRIEMRRAFKENLEESPFITPGKPWEEARSFIMNEDFYQKLTESVYTDVYGRHQKQII------------------E 265 (1100)
T ss_pred ---hhHHHHHHHHHhhhcCCccCCCCCHHHhhchhhhhhHHHhcccceeeccchHHHHHHH------------------H
Confidence 2334567899999999999999999999999999999999998888888877776542 2
Q ss_pred HhHHHHHHHHHHHhhcCccCCCCChHHHHHHHhcCchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHH
Q 002862 689 KNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQED 756 (873)
Q Consensus 689 k~Rd~F~~LL~E~~k~g~I~~~t~W~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~veeL~k~~~e~ 756 (873)
|+|..|.++|.+ |.++...+-.| +..-+.+.+.-+|+.++ +.+|+..
T Consensus 266 kak~~~qE~l~e------------~s~Lf~d~~~~--------a~~fsdKmeti~d~le~-e~rye~~ 312 (1100)
T KOG4271|consen 266 KAKEEFQELLLE------------YSELFYDLELD--------AKPFSDKMETIQDVLEE-EARYEAA 312 (1100)
T ss_pred HHHHHHHHHHHH------------Hhhhhhhhhhc--------cccccchhHHHHHHHHh-HHHHHHH
Confidence 466778888876 33444433222 23445666666666654 2344443
No 13
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.56 E-value=3.4e-08 Score=71.52 Aligned_cols=28 Identities=43% Similarity=1.013 Sum_probs=26.1
Q ss_pred CCcEEEEcCC-CCceeecCCCcccccCCC
Q 002862 231 TDWKEHTSAD-GRRYYFNKRTRVSTWDKP 258 (873)
Q Consensus 231 ~~W~~~~~~~-Gr~YYyN~~T~~stWe~P 258 (873)
.+|+++.|.+ ||+||||+.|++|+|++|
T Consensus 3 ~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 3 PGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp TTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred cCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 5699999876 999999999999999998
No 14
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.54 E-value=7.3e-08 Score=69.79 Aligned_cols=30 Identities=47% Similarity=1.080 Sum_probs=27.4
Q ss_pred CCCCcEEEeCCC-CCeEEEeCCCCeeeccCC
Q 002862 270 ASTDWKEFTSPD-GRKYYYNKVTKQSKWSLP 299 (873)
Q Consensus 270 ~~~~W~e~~~~~-Gr~YyyN~~T~es~We~P 299 (873)
++.+|+++.|++ |++||||..||+|+|+.|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 467899999875 999999999999999998
No 15
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.42 E-value=1.9e-07 Score=67.24 Aligned_cols=29 Identities=38% Similarity=0.955 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCCceeecCCCcccccCCCC
Q 002862 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPF 259 (873)
Q Consensus 231 ~~W~~~~~~~Gr~YYyN~~T~~stWe~P~ 259 (873)
.+|+++.|.+|++||||+.|++|+|++|.
T Consensus 2 ~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 2 PGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 58999999999999999999999999996
No 16
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.42 E-value=2e-07 Score=67.88 Aligned_cols=30 Identities=40% Similarity=1.004 Sum_probs=28.3
Q ss_pred CCCcEEEEcCCCCceeecCCCcccccCCCC
Q 002862 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPF 259 (873)
Q Consensus 230 ~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~ 259 (873)
..+|+++.|.+|++||||+.|++|+|++|.
T Consensus 2 p~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 2 PPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 468999999999999999999999999996
No 17
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.30 E-value=7.6e-07 Score=64.77 Aligned_cols=31 Identities=45% Similarity=1.017 Sum_probs=28.9
Q ss_pred CCCCcEEEeCCCCCeEEEeCCCCeeeccCCh
Q 002862 270 ASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 300 (873)
Q Consensus 270 ~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 300 (873)
++.+|.++.|.+|+.||||..|++|+|+.|.
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 3679999999999999999999999999995
No 18
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.16 E-value=2.3e-06 Score=61.61 Aligned_cols=30 Identities=47% Similarity=0.988 Sum_probs=28.1
Q ss_pred CCCcEEEeCCCCCeEEEeCCCCeeeccCCh
Q 002862 271 STDWKEFTSPDGRKYYYNKVTKQSKWSLPD 300 (873)
Q Consensus 271 ~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 300 (873)
+.+|.+..|.+|+.||||..|++|+|+.|.
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 368999999999999999999999999995
No 19
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=97.85 E-value=1.5e-05 Score=81.41 Aligned_cols=70 Identities=27% Similarity=0.680 Sum_probs=61.8
Q ss_pred CCCCCCCcEEEEcCCCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 226 AEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 226 ~~~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
-.+...+|..-.+-.||.||.+|.+..|-|-.|. |+..++.||+.+++..--+||||..+|.++.+-|..
T Consensus 91 dlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPl------erEgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc~ 160 (271)
T KOG1891|consen 91 DLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPL------EREGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPCI 160 (271)
T ss_pred cCCCCCCcceeeEecCceeEeecCCCcccccChh------hhccCCcchhhccccccceeeeecccchhhhcCCCC
Confidence 3455678999999999999999999999999995 455789999999999888999999999999998855
No 20
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=6.4e-05 Score=72.29 Aligned_cols=32 Identities=38% Similarity=0.848 Sum_probs=29.4
Q ss_pred CCCcEEEEcC-CCCceeecCCCcccccCCCCcc
Q 002862 230 QTDWKEHTSA-DGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 230 ~~~W~~~~~~-~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
+.+|+...+. +||+||||+.|++|+||.|.+.
T Consensus 8 P~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t 40 (163)
T KOG3259|consen 8 PPGWEKRMSRSSGRPYYFNTETNESQWERPSGT 40 (163)
T ss_pred CchhheeccccCCCcceeccccchhhccCCCcc
Confidence 5689999995 7999999999999999999876
No 21
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=9.1e-05 Score=71.28 Aligned_cols=34 Identities=32% Similarity=0.746 Sum_probs=30.6
Q ss_pred cCCCCcEEEeC-CCCCeEEEeCCCCeeeccCChHH
Q 002862 269 DASTDWKEFTS-PDGRKYYYNKVTKQSKWSLPDEL 302 (873)
Q Consensus 269 ~~~~~W~e~~~-~~Gr~YyyN~~T~es~We~P~~~ 302 (873)
.++.+|+...+ ..|++||||+.|++|+||.|.+.
T Consensus 6 ~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t 40 (163)
T KOG3259|consen 6 KLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGT 40 (163)
T ss_pred cCCchhheeccccCCCcceeccccchhhccCCCcc
Confidence 57899999999 57999999999999999999763
No 22
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.06 E-value=0.0027 Score=75.25 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002862 739 KDLFEDVVEELQKQFQED 756 (873)
Q Consensus 739 ldLF~d~veeL~k~~~e~ 756 (873)
.|+|-+.+....++.+++
T Consensus 927 ~dkF~ekM~~F~e~a~eq 944 (1102)
T KOG1924|consen 927 HDKFVEKMTSFHEKAREQ 944 (1102)
T ss_pred hhhHHHHhhHHHHHHHHH
Confidence 455555544444444333
No 23
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.062 Score=65.13 Aligned_cols=17 Identities=12% Similarity=0.303 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 002862 587 ERDRKDMFDDHLDELKQ 603 (873)
Q Consensus 587 e~eRe~lF~eyi~~L~k 603 (873)
+.|..++++|......+
T Consensus 640 ~~D~~rl~nDL~~~vtk 656 (1007)
T KOG1984|consen 640 LTDGPRLLNDLVRNVTK 656 (1007)
T ss_pred cccHHHHHHHHHHhccc
Confidence 35677777776665554
No 24
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.74 E-value=0.0087 Score=71.14 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 002862 523 KTAFNEYLGQKK 534 (873)
Q Consensus 523 KqlFeeYl~~~~ 534 (873)
|--|++-+.+++
T Consensus 787 Kl~fse~vnniK 798 (1102)
T KOG1924|consen 787 KLTFSEQVNNIK 798 (1102)
T ss_pred HhhHHHHHhhcC
Confidence 345666666654
No 25
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=96.23 E-value=0.076 Score=63.59 Aligned_cols=36 Identities=39% Similarity=0.693 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCCCCC---CCCCCCCCC-CCCCCCCCCCC
Q 002862 9 PYSGAQVPHQPPMVGS---MDPPRGFGP-PIPSQYRPLVP 44 (873)
Q Consensus 9 ~~~~~~~~~~~~~~~~---~~~~~~f~~-~~~~q~~p~~~ 44 (873)
+++|+|.++.+|++-+ +.+|.+|+| ++++.++|.-.
T Consensus 591 ~~pg~P~~~~~Ppa~p~~~~~ppPgf~PnpPpP~~~Pg~n 630 (894)
T KOG0132|consen 591 PRPGAPIPSGEPPAFPGPMWHPPPGFVPNPPPPPLRPGYN 630 (894)
T ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCC
Confidence 4455554444444433 345566666 44444555544
No 26
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.89 E-value=0.091 Score=57.52 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 002862 16 PHQPPMVGSMDPPRGFGPPIPS 37 (873)
Q Consensus 16 ~~~~~~~~~~~~~~~f~~~~~~ 37 (873)
++.|+...+...|.|....+.|
T Consensus 225 ~P~P~m~~P~s~P~N~~~~P~~ 246 (498)
T KOG4849|consen 225 RPTPLMSQPTSLPSNLNQAPQM 246 (498)
T ss_pred CCCCCCCCCCCCCCCcCcCccc
Confidence 3344444444444444444433
No 27
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.93 Score=55.51 Aligned_cols=7 Identities=29% Similarity=0.330 Sum_probs=3.6
Q ss_pred CCCCCCC
Q 002862 28 PRGFGPP 34 (873)
Q Consensus 28 ~~~f~~~ 34 (873)
+++|++-
T Consensus 16 ~~~~~~g 22 (1007)
T KOG1984|consen 16 PPNFYGG 22 (1007)
T ss_pred CCCcCCC
Confidence 5555543
No 28
>PHA03247 large tegument protein UL36; Provisional
Probab=95.63 E-value=2 Score=58.29 Aligned_cols=11 Identities=0% Similarity=-0.432 Sum_probs=5.7
Q ss_pred CCCCCCCcEEE
Q 002862 226 AEGVQTDWKEH 236 (873)
Q Consensus 226 ~~~~~~~W~~~ 236 (873)
+....++|..-
T Consensus 2848 P~~~~~g~~~~ 2858 (3151)
T PHA03247 2848 PSLPLGGSVAP 2858 (3151)
T ss_pred CCCCCCCccCC
Confidence 33445677543
No 29
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=1.6 Score=54.75 Aligned_cols=11 Identities=27% Similarity=0.755 Sum_probs=5.7
Q ss_pred cCChHHHHHHH
Q 002862 297 SLPDELKLARE 307 (873)
Q Consensus 297 e~P~~~~~~~~ 307 (873)
+.|++...++.
T Consensus 943 ~~P~~~~~i~~ 953 (1049)
T KOG0307|consen 943 PIPEELQIIET 953 (1049)
T ss_pred CCchHHHHHHH
Confidence 34556555543
No 30
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=94.87 E-value=0.018 Score=62.07 Aligned_cols=52 Identities=29% Similarity=0.386 Sum_probs=44.7
Q ss_pred cccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHH
Q 002862 251 RVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302 (873)
Q Consensus 251 ~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 302 (873)
+..+|..|.++++..+.......|.+...++|.+||||..|++|+|..|...
T Consensus 130 ~a~q~~~~~g~v~~~e~~~~~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~ 181 (336)
T KOG0150|consen 130 PALQEYIPTGLVTKDEANAETKEWVEGKNESGPTYYSNKRTNESVWKPPRIS 181 (336)
T ss_pred ccchhhccccccchhhhhhhhhhcccccCCCCCCcceecCCCccccCCCCcc
Confidence 6678999998877665555677899999999999999999999999999854
No 31
>PHA03247 large tegument protein UL36; Provisional
Probab=94.79 E-value=4.5 Score=55.12 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCCCCC
Q 002862 29 RGFGPPIPSQYRPLVP 44 (873)
Q Consensus 29 ~~f~~~~~~q~~p~~~ 44 (873)
..=+||...+-+|.+|
T Consensus 2565 d~~~PPp~pAp~P~~P 2580 (3151)
T PHA03247 2565 DRSVPPPRPAPRPSEP 2580 (3151)
T ss_pred ccCCCCCCCCCCCCCC
Confidence 3333443444444444
No 32
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.07 Score=60.33 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=59.7
Q ss_pred CCCcEEEEcCCC---CceeecCCCc-ccccCCCCcchhhhh--------hccCCCCcEEEeCCCCCeEEEeCCCCeeecc
Q 002862 230 QTDWKEHTSADG---RRYYFNKRTR-VSTWDKPFELMTTIE--------RADASTDWKEFTSPDGRKYYYNKVTKQSKWS 297 (873)
Q Consensus 230 ~~~W~~~~~~~G---r~YYyN~~T~-~stWe~P~~~~~~~e--------~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We 297 (873)
+.+|....+.+| +.||+|+.+. .|+|..|..-..|.. +...-.+|....+++|..||||...+.++|-
T Consensus 62 prewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg~~p~~l~~~~~vg~~~~l~~~h~~~~~~g~r~F~~~i~~ktt~l 141 (358)
T KOG0940|consen 62 PREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSGVNPGHLTYFRFVGGVLALAGWHMRFTDTGQRPFYKHILKKTTTL 141 (358)
T ss_pred CcceeeeeccccCCcceeeeeecccccccccCCccCCCCCcccccccccccccccceeeEecCCCceehhhhhhcCcccc
Confidence 458999999998 9999999999 599999987744421 1223338999999999999999999999998
Q ss_pred CChHH
Q 002862 298 LPDEL 302 (873)
Q Consensus 298 ~P~~~ 302 (873)
+|.+.
T Consensus 142 dd~e~ 146 (358)
T KOG0940|consen 142 DDREA 146 (358)
T ss_pred Cchhh
Confidence 88664
No 33
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.70 E-value=31 Score=42.28 Aligned_cols=119 Identities=17% Similarity=0.212 Sum_probs=64.3
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCCcHHHHHHHhhcC----ccccccC--Ch-HHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 002862 476 ANKLEAKNAFKALLESANVGSDWTWDQALRAIIND----RRYGALR--TL-GERKTAFNEYLGQKKKQDAEERRLKLKKA 548 (873)
Q Consensus 476 ~skeeAk~aFk~LL~e~~V~s~~tWe~~~~~i~~D----pRy~al~--~~-~ERKqlFeeYl~~~~k~E~eekr~~~kka 548 (873)
+-|++++..|++|+..-. ++.. ++.. +.|-.++ ++ .++-.-|...|.++.+ |+..+..+.-..
T Consensus 117 ~qk~eR~~ef~el~~qie--------~l~~-~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~-ek~~Rlekv~~~ 186 (660)
T KOG4302|consen 117 KQKDERRAEFKELYHQIE--------KLCE-ELGGPEDLPSFLIADESDLSLEKLEELREHLNELQK-EKSDRLEKVLEL 186 (660)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHH-HhcCCccCCcccccCcccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 457889999999997531 1111 1222 3444443 22 3666778888877764 333333333334
Q ss_pred HHHHHHHHHhcccCCCcccHHHHHHHhc-CChhhhhcCChHHHHHHHHHHHHHHHHHHH
Q 002862 549 RDDYKKMLEESVELTSSTRWSKAVTMFE-NDERFKALERERDRKDMFDDHLDELKQKER 606 (873)
Q Consensus 549 re~F~~lLee~~~i~~~trW~~a~~~~~-~Dprfkav~~e~eRe~lF~eyi~~L~kkek 606 (873)
+.+...+... ..++..+.=.++-..+. .+.++....+ .++..-+..-+..|+...+
T Consensus 187 ~~~I~~l~~~-Lg~~~~~~vt~~~~sL~~~~~~~~~~is-~etl~~L~~~v~~l~~~k~ 243 (660)
T KOG4302|consen 187 KEEIKSLCSV-LGLDFSMTVTDVEPSLVDHDGEQSRSIS-DETLDRLDKMVKKLKEEKK 243 (660)
T ss_pred HHHHHHHHHH-hCCCcccchhhhhhhhhhccCcccccCC-HHHHHHHHHHHHHHHHHHH
Confidence 4444444433 24555544455555443 3333443333 3777777777777776544
No 34
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.61 E-value=1.3 Score=54.05 Aligned_cols=7 Identities=14% Similarity=0.330 Sum_probs=3.4
Q ss_pred hHHHHHH
Q 002862 656 DRLEIFQ 662 (873)
Q Consensus 656 drl~lFe 662 (873)
+..+||.
T Consensus 620 sl~evY~ 626 (887)
T KOG1985|consen 620 SLNEVYA 626 (887)
T ss_pred cHHHHHh
Confidence 3445553
No 35
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=92.03 E-value=7.7 Score=47.34 Aligned_cols=10 Identities=10% Similarity=0.009 Sum_probs=4.6
Q ss_pred CCCCCccccC
Q 002862 171 QQPMSQMHVP 180 (873)
Q Consensus 171 ~~~~~~~~~~ 180 (873)
.-|||.++.+
T Consensus 709 ~~PPPP~~~~ 718 (894)
T KOG0132|consen 709 GIPPPPFFDR 718 (894)
T ss_pred CCCCCccccC
Confidence 3445444444
No 36
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=91.17 E-value=2.8 Score=44.12 Aligned_cols=18 Identities=22% Similarity=0.419 Sum_probs=8.0
Q ss_pred CCCCCCCCccCCCCCCCC
Q 002862 60 QPGGQGGLIMNAGFPSQP 77 (873)
Q Consensus 60 ~~~~~~~p~~~~g~p~q~ 77 (873)
.|+..+++.+..|||+-.
T Consensus 142 mpp~p~~~~~p~gmp~~~ 159 (341)
T KOG2893|consen 142 MPPMPSGMMPPRGMPGAY 159 (341)
T ss_pred CCCCCCCCCCCCCCCCCC
Confidence 333444444445555433
No 37
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=91.10 E-value=9.3 Score=46.08 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002862 7 NAPYSGAQVPHQPPMVGSMDPPRGFGPPIPS 37 (873)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 37 (873)
-++-+|.|+|.++=.+.++.+-+-|..|.||
T Consensus 173 yh~~s~~P~p~~~~~~~~pan~rv~~~~pp~ 203 (1034)
T KOG0608|consen 173 YHPRSGTPMPGRHFMMDTPANERVFRSPPPM 203 (1034)
T ss_pred cCCCCCCCCCcchhhccCcccccCCCCCccc
Confidence 3444556655554444455554444444333
No 38
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=90.98 E-value=0.38 Score=57.37 Aligned_cols=74 Identities=18% Similarity=0.466 Sum_probs=61.2
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCcchh---hhh--hccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHH
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMT---TIE--RADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~---~~e--~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 302 (873)
....|+...+..|-+||-++.|+.++|-+|+-.+. +.+ ...++.+|+..-|.-=.+|||.+.+..|+++-|-.-
T Consensus 223 lp~nwemayte~gevyfiDhntkttswLdprl~kkaK~~eeckd~elPygWeki~dpiYg~yyvdHiN~~sq~enpvle 301 (984)
T KOG3209|consen 223 LPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKAKPPEECKDQELPYGWEKIEDPIYGTYYVDHINRKSQYENPVLE 301 (984)
T ss_pred CCccceEeEeecCeeEeeecccccceecChhhhcccCChhhcccccccccccccCCccceeEEecccchhhhhccchhh
Confidence 35789999999999999999999999999993332 222 235789999998886778999999999999998653
No 39
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.82 E-value=0.26 Score=57.85 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=5.4
Q ss_pred CCCCCCCCCCCC
Q 002862 121 PSSLPRPNVQAL 132 (873)
Q Consensus 121 ~~~~~~~~~~~~ 132 (873)
+...|.+..++|
T Consensus 212 p~~~p~~~s~~p 223 (728)
T KOG4592|consen 212 PELLPTPSSQQP 223 (728)
T ss_pred CccCCCCCccCc
Confidence 344444444444
No 40
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=89.63 E-value=27 Score=44.04 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHhhcCccccccCCh
Q 002862 481 AKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTL 519 (873)
Q Consensus 481 Ak~aFk~LL~e~~V~s~~tWe~~~~~i~~DpRy~al~~~ 519 (873)
.-+.|.+-|..- .++ |+ -+|=-|.-|.+.
T Consensus 550 QSArF~kHldRG-~NS-Ca--------RTDL~F~Pl~gS 578 (982)
T PF03154_consen 550 QSARFNKHLDRG-YNS-CA--------RTDLYFVPLPGS 578 (982)
T ss_pred HHHHHHHHhhcc-ccc-cc--------ccceeeeecCcc
Confidence 346688877542 222 11 146666666653
No 41
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.57 E-value=9.2 Score=47.11 Aligned_cols=8 Identities=0% Similarity=-0.168 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 002862 527 NEYLGQKK 534 (873)
Q Consensus 527 eeYl~~~~ 534 (873)
|++.....
T Consensus 444 Edp~~~~s 451 (887)
T KOG1985|consen 444 EDPNVRSS 451 (887)
T ss_pred cccccccc
Confidence 55544433
No 42
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=88.27 E-value=0.14 Score=64.34 Aligned_cols=9 Identities=11% Similarity=0.796 Sum_probs=3.3
Q ss_pred ChHHHHHHH
Q 002862 712 NWRDYCIKV 720 (873)
Q Consensus 712 ~W~e~~~~i 720 (873)
.|.++|..|
T Consensus 711 ~W~~~~~~l 719 (808)
T PF09770_consen 711 QWTEFYDQL 719 (808)
T ss_dssp HHHHH----
T ss_pred Hhhhhhhhc
Confidence 566666655
No 43
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=86.45 E-value=58 Score=41.25 Aligned_cols=10 Identities=10% Similarity=0.461 Sum_probs=5.6
Q ss_pred ccchHHHHhh
Q 002862 847 ADNFWRVAKS 856 (873)
Q Consensus 847 ~d~~~~~~~~ 856 (873)
+++-|+-||.
T Consensus 967 q~~yy~~~~~ 976 (982)
T PF03154_consen 967 QEDYYSHLKK 976 (982)
T ss_pred hHHHHHHhhh
Confidence 3566666643
No 44
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.12 E-value=12 Score=44.78 Aligned_cols=7 Identities=29% Similarity=0.306 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 002862 85 LMHPLPA 91 (873)
Q Consensus 85 ~~~p~~~ 91 (873)
-||++.|
T Consensus 513 ~M~~~~y 519 (861)
T KOG3161|consen 513 VMHSSVY 519 (861)
T ss_pred cccccee
Confidence 3444444
No 45
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=86.10 E-value=0.35 Score=52.53 Aligned_cols=38 Identities=37% Similarity=0.630 Sum_probs=33.1
Q ss_pred CCCCCCCcEEEEcCCCCceeecCCCcccccCCCCcchh
Q 002862 226 AEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMT 263 (873)
Q Consensus 226 ~~~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~ 263 (873)
.......|.+-+.++|-.||||..|++|.|..|+...+
T Consensus 146 ~~~~~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~~t 183 (336)
T KOG0150|consen 146 ANAETKEWVEGKNESGPTYYSNKRTNESVWKPPRISFT 183 (336)
T ss_pred hhhhhhhcccccCCCCCCcceecCCCccccCCCCcccc
Confidence 34446789999999999999999999999999997754
No 46
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=85.54 E-value=0.79 Score=54.82 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=32.5
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHHHHH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLA 305 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~ 305 (873)
.++..|+-..++.|-+||.+..|+.++|-+|...+.+
T Consensus 222 plp~nwemayte~gevyfiDhntkttswLdprl~kka 258 (984)
T KOG3209|consen 222 PLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKA 258 (984)
T ss_pred CCCccceEeEeecCeeEeeecccccceecChhhhccc
Confidence 4678999999999999999999999999999854433
No 47
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=85.52 E-value=33 Score=42.45 Aligned_cols=8 Identities=25% Similarity=0.326 Sum_probs=4.1
Q ss_pred CCCCCCCC
Q 002862 72 GFPSQPLQ 79 (873)
Q Consensus 72 g~p~q~~~ 79 (873)
||.+|++.
T Consensus 577 ~~~P~~g~ 584 (756)
T KOG2375|consen 577 GYNPQMGN 584 (756)
T ss_pred CCCcccCC
Confidence 44555554
No 48
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=84.79 E-value=2.8 Score=47.33 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=4.4
Q ss_pred CCCCCCCCCCC
Q 002862 57 QHFQPGGQGGL 67 (873)
Q Consensus 57 ~~f~~~~~~~p 67 (873)
|-|.||.|.+|
T Consensus 405 q~yspp~q~~p 415 (462)
T KOG2199|consen 405 QSYSPPQQQQP 415 (462)
T ss_pred ccCCChhhcCC
Confidence 34444443333
No 49
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=84.76 E-value=12 Score=39.69 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCCC
Q 002862 129 VQALSSYPPGLGGLG 143 (873)
Q Consensus 129 ~~~~~~~~~~~~~~~ 143 (873)
..+|.-|||-.|.+|
T Consensus 168 ~~~pgv~mp~~g~pg 182 (341)
T KOG2893|consen 168 APAPGVYMPPPGMPG 182 (341)
T ss_pred CCCCccccCCCCCCC
Confidence 344445555544443
No 50
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.30 E-value=4.1 Score=48.34 Aligned_cols=17 Identities=35% Similarity=0.278 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 002862 129 VQALSSYPPGLGGLGRPV 146 (873)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~ 146 (873)
.+++++-.| .|-++.++
T Consensus 215 ~p~~~s~~p-~g~~~~~v 231 (728)
T KOG4592|consen 215 LPTPSSQQP-NGIGGNRV 231 (728)
T ss_pred CCCCCccCc-cCCCCCCC
Confidence 355555544 44444443
No 51
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=83.45 E-value=13 Score=43.94 Aligned_cols=7 Identities=29% Similarity=-0.344 Sum_probs=3.8
Q ss_pred CCCceee
Q 002862 240 DGRRYYF 246 (873)
Q Consensus 240 ~Gr~YYy 246 (873)
|||.=||
T Consensus 543 dirlp~p 549 (757)
T KOG4368|consen 543 DIRLPPP 549 (757)
T ss_pred hccCCCC
Confidence 5665444
No 52
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=82.85 E-value=0.74 Score=52.21 Aligned_cols=33 Identities=6% Similarity=-0.142 Sum_probs=29.8
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
..+.|..|.-.+|=.|||+.++.++.|+++.+.
T Consensus 451 Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI 483 (510)
T KOG0144|consen 451 VLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAI 483 (510)
T ss_pred eeEEEEEEecccCHhhhcCcccccchhhhHHHH
Confidence 357899999999999999999999999999765
No 53
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=82.13 E-value=27 Score=40.06 Aligned_cols=7 Identities=57% Similarity=1.312 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 002862 16 PHQPPMV 22 (873)
Q Consensus 16 ~~~~~~~ 22 (873)
|+|++.+
T Consensus 272 pp~~~~~ 278 (518)
T KOG1830|consen 272 PPQPPVM 278 (518)
T ss_pred CCCCCcc
Confidence 3443333
No 54
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=79.80 E-value=0.57 Score=59.05 Aligned_cols=6 Identities=50% Similarity=0.623 Sum_probs=0.0
Q ss_pred chhhhh
Q 002862 261 LMTTIE 266 (873)
Q Consensus 261 ~~~~~e 266 (873)
+||+.|
T Consensus 361 LMt~rD 366 (808)
T PF09770_consen 361 LMTPRD 366 (808)
T ss_dssp ------
T ss_pred cccccc
Confidence 455444
No 55
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=79.59 E-value=42 Score=40.00 Aligned_cols=29 Identities=17% Similarity=0.040 Sum_probs=15.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002862 9 PYSGAQVPHQPPMVGSMDPPRGFGPPIPSQY 39 (873)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~q~ 39 (873)
..+|+- +|++++++-+ ..+||....+.++
T Consensus 295 p~~GPg-dH~h~~~~~p-~dq~hpqA~~~~~ 323 (757)
T KOG4368|consen 295 PAPGPG-PHDQIPPNKP-FDQPHPVAPWGQQ 323 (757)
T ss_pred CCCCCC-cccccCCCCC-CCCCCCCCCCCCC
Confidence 334444 5666666544 4556655444444
No 56
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=79.48 E-value=1.2e+02 Score=39.59 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhh-hc----CChHHHHHHHHHHHHH
Q 002862 526 FNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK-AL----ERERDRKDMFDDHLDE 600 (873)
Q Consensus 526 FeeYl~~~~k~E~eekr~~~kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfk-av----~~e~eRe~lF~eyi~~ 600 (873)
|-=|+.++++-+-..++=++......|...|.....+. .+-|.++...++++.-|. ++ .+..-++.+++-|-+.
T Consensus 870 yLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~-~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~h 948 (1265)
T KOG1920|consen 870 YLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG-ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADH 948 (1265)
T ss_pred HHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC-ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHH
Confidence 44456666655555555555666777777776544444 678999999999999887 32 2445778888888888
Q ss_pred HHHHHH
Q 002862 601 LKQKER 606 (873)
Q Consensus 601 L~kkek 606 (873)
|.+..+
T Consensus 949 L~~~~~ 954 (1265)
T KOG1920|consen 949 LREELM 954 (1265)
T ss_pred HHHhcc
Confidence 877643
No 57
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=78.16 E-value=88 Score=40.72 Aligned_cols=12 Identities=25% Similarity=0.205 Sum_probs=5.7
Q ss_pred cCCCCCCCcCCC
Q 002862 194 QSTVSSTPVQPT 205 (873)
Q Consensus 194 ~~~~~~~~~~~~ 205 (873)
+++..-++|+..
T Consensus 1911 ~p~p~l~~v~~~ 1922 (1958)
T KOG0391|consen 1911 QPSPQLTTVTAP 1922 (1958)
T ss_pred CCCCCCCccccC
Confidence 344445555543
No 58
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.77 E-value=37 Score=39.63 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=31.1
Q ss_pred cHHHHHHHhhhhhh--hhcC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002862 635 QWRKVQDRLEADER--CSRL--DKMDRLEIFQEYLNDLEKEEEEQRKIQKEE 682 (873)
Q Consensus 635 ~W~ev~~~l~~D~r--~~~l--~~~drl~lFed~i~~Leke~ee~kr~~k~~ 682 (873)
.|..|++.|-..+. ...+ -..+...+|+++.+.+.+.+.+-+|+.|+.
T Consensus 2 ~~k~~kKa~sRa~ekvlqk~g~~~~TkD~~FE~~~~~f~~~e~e~~kLqkd~ 53 (460)
T KOG3771|consen 2 SAKGVQKALNRAPEKVLQKLGKVDETKDEQFEQEERNFNKQEAEGKRLQKDL 53 (460)
T ss_pred cchhhHHHhccccHHHHhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666665533221 1222 234677899999999988888887777764
No 59
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=77.74 E-value=2e+02 Score=36.14 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=15.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHH
Q 002862 652 LDKMDRLEIFQEYLNDLEKEEEEQR 676 (873)
Q Consensus 652 l~~~drl~lFed~i~~Leke~ee~k 676 (873)
+.++|...|-..-|.+|+|+..|..
T Consensus 659 ~e~lD~d~i~~~q~eel~Ke~kElq 683 (988)
T KOG2072|consen 659 LEKLDADQIKARQIEELEKERKELQ 683 (988)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666777766655543
No 60
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=77.58 E-value=1.4e+02 Score=35.39 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=44.9
Q ss_pred HHHHHHhhhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCccCCCCChHHH
Q 002862 637 RKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDY 716 (873)
Q Consensus 637 ~ev~~~l~~D~r~~~l~~~drl~lFed~i~~Leke~ee~kr~~k~~~rR~eRk~Rd~F~~LL~E~~k~g~I~~~t~W~e~ 716 (873)
..+...|.+|.....++..+.+.|+..+.....+....-+.. .+.....++.+++.++.+|..++..-.=++-..=.|+
T Consensus 50 ~~~~~~l~~d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~l-~~~L~~~E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv 128 (473)
T PF14643_consen 50 EEIFSKLEDDSALLEYSIQDLLELWDEVAEHSQKRKQWIKEL-DEDLEELEKERADKLKKVLRKYVEILEKIAHLLPPDV 128 (473)
T ss_pred HHHHHHhcCchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence 455566677777777777777777777666443332222111 1222334455566666666665542211222234566
Q ss_pred HHHHhcC
Q 002862 717 CIKVKDS 723 (873)
Q Consensus 717 ~~~ikdD 723 (873)
..+|-+.
T Consensus 129 ~rli~~e 135 (473)
T PF14643_consen 129 ERLIEKE 135 (473)
T ss_pred HHHHHHH
Confidence 6655433
No 61
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=76.30 E-value=20 Score=42.38 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=5.1
Q ss_pred CCCCCCCCCC
Q 002862 111 PNAQPSNHIP 120 (873)
Q Consensus 111 ~~~~~~~~~~ 120 (873)
+.++|.+.++
T Consensus 256 ~qg~p~~~~~ 265 (742)
T KOG4274|consen 256 QQGQPLRAQP 265 (742)
T ss_pred cccCCCCCCC
Confidence 4445555544
No 62
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.38 E-value=2.1e+02 Score=35.31 Aligned_cols=93 Identities=25% Similarity=0.338 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcCcccCCCCCHHHHHHHhhhcCC--CCCCChhhHHHHHHHHHH
Q 002862 737 TPKDLFEDVVEELQKQFQEDKTR-------IKDAVKLRKITLSSTWTFEDFKASVLEDAT--SPPISDVNLKLIFDDLLI 807 (873)
Q Consensus 737 ~~ldLF~d~veeL~k~~~e~k~~-------i~d~Lk~~~i~~~s~wt~ee~~~~l~ed~r--~~~l~~~nlk~iFe~li~ 807 (873)
..++=|..++.+|.+++...... |+++....++...... .+|..-+.+... ...|+++.+.. ++..+.
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~v--t~~~~sL~~~~~~~~~~is~etl~~-L~~~v~ 236 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTV--TDVEPSLVDHDGEQSRSISDETLDR-LDKMVK 236 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch--hhhhhhhhhccCcccccCCHHHHHH-HHHHHH
Confidence 34566888888887766544333 4444555666665443 578766665443 35677877753 455666
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHh
Q 002862 808 KVKEKEEKEAKKR---KRLEDEFFDLLC 832 (873)
Q Consensus 808 r~kEKe~ee~rk~---~r~~~~F~~lL~ 832 (873)
.+++...+...+. ..-..++.++|.
T Consensus 237 ~l~~~k~qr~~kl~~l~~~~~~LWn~l~ 264 (660)
T KOG4302|consen 237 KLKEEKKQRLQKLQDLRTKLLELWNLLD 264 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6654333332222 333345666663
No 63
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=75.14 E-value=29 Score=33.69 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhcC
Q 002862 523 KTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALE 585 (873)
Q Consensus 523 KqlFeeYl~~~~k~E~eekr~~~kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav~ 585 (873)
.+||+.|==+++++-.+++..+. +--++|..-|++... .++|+|.+..
T Consensus 34 EeL~~r~sPELrkr~~~~r~~Rq-~e~~~~~~~lKe~sk--------------SdkPIW~~~~ 81 (128)
T PF07960_consen 34 EELFKRYSPELRKRYLENRELRQ-QEFDEFMKILKETSK--------------SDKPIWKTGK 81 (128)
T ss_pred HHHHHhcCHHHHHHHHHhHHHHH-HHHHHHHHHHHHHhc--------------cCCCceeeCC
Confidence 56899998888776555544333 344778888876421 4689998654
No 64
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=74.77 E-value=17 Score=42.04 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=6.6
Q ss_pred CCCCCCCCCCC
Q 002862 136 PPGLGGLGRPV 146 (873)
Q Consensus 136 ~~~~~~~~~~~ 146 (873)
||++|.-|.+.
T Consensus 567 ~P~~Gs~Ga~~ 577 (654)
T COG5180 567 MPVMGSNGAEE 577 (654)
T ss_pred CcccCCCCCcc
Confidence 56666655554
No 65
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.96 E-value=23 Score=41.07 Aligned_cols=9 Identities=44% Similarity=0.825 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q 002862 34 PIPSQYRPL 42 (873)
Q Consensus 34 ~~~~q~~p~ 42 (873)
|++..||+-
T Consensus 369 p~~~~y~~r 377 (483)
T KOG2236|consen 369 PAPQMYRGR 377 (483)
T ss_pred CcccccCCc
Confidence 334444444
No 66
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=71.76 E-value=18 Score=46.99 Aligned_cols=29 Identities=31% Similarity=0.315 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q 002862 20 PMVGSMDPPRGFGPPIPSQYRPLVP-APQPQ 49 (873)
Q Consensus 20 ~~~~~~~~~~~f~~~~~~q~~p~~~-~~~~~ 49 (873)
+|+|+-.-|++.. -.+|+|||.+| .+.++
T Consensus 1886 ~pgg~r~dp~g~~-~~~~~~~pt~p~~~~~n 1915 (2220)
T KOG3598|consen 1886 APGGRRPDPRGRR-KRNSGARPTGPRAKRAN 1915 (2220)
T ss_pred CCCCCCCCCCCcc-ccccccCCCCCcccccc
Confidence 3444443355543 35899999999 44444
No 67
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=71.27 E-value=1.1e+02 Score=38.20 Aligned_cols=50 Identities=10% Similarity=0.103 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhccCCcccchHHHHhhcChHHHHHhhhccc
Q 002862 816 EAKKRKRLEDEFFDLLCSVKVRYLQLLHGKIADNFWRVAKSSVPLEMKASAGGYL 870 (873)
Q Consensus 816 e~rk~~r~~~~F~~lL~~~k~It~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 870 (873)
-..|++++.+.|+.|..+++.+.. ++ .|++|..+-..+..+-..|.....
T Consensus 240 L~~r~~~L~~k~~~L~~e~~~LK~----EL-iedRW~~vFr~l~~q~~~m~esve 289 (683)
T PF08580_consen 240 LEDRYERLEKKWKKLEKEAESLKK----EL-IEDRWNIVFRNLGRQAQKMCESVE 289 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----Hh-hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888776652 22 478898887777777776665543
No 68
>PF02948 Amelogenin: Amelogenin; InterPro: IPR004116 Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth. They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins []. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units []: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region []. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide [].; GO: 0007275 multicellular organismal development, 0005578 proteinaceous extracellular matrix
Probab=71.19 E-value=53 Score=33.33 Aligned_cols=15 Identities=33% Similarity=0.831 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCCCCC
Q 002862 41 PLVPAPQPQHYVPMA 55 (873)
Q Consensus 41 p~~~~~~~~~~~~~~ 55 (873)
|..++++-+.|+|..
T Consensus 82 P~mqqPghh~~~P~~ 96 (174)
T PF02948_consen 82 PMMQQPGHHPFVPMQ 96 (174)
T ss_pred CCCcccccCCccCCC
Confidence 444444445555544
No 69
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=70.94 E-value=25 Score=40.76 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccC
Q 002862 33 PPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMN 70 (873)
Q Consensus 33 ~~~~~q~~p~~~~~~~~~~~~~~~~~f~~~~~~~p~~~ 70 (873)
|-+-|.+-|+|+++.--||+| ++--|+|..|++|.++
T Consensus 535 P~P~M~~~~~G~~~~Y~P~~P-Q~~~~~PSP~~~P~~G 571 (654)
T COG5180 535 PNPMMNGFAAGSMGMYMPFQP-QPMFYHPSPQMMPVMG 571 (654)
T ss_pred CCCCcCCcccCCcccccCCCC-CcccccCCCCCCcccC
Confidence 444566777777776556664 4445677777777664
No 70
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=69.28 E-value=19 Score=44.16 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=42.3
Q ss_pred HHHHHHhhcCccCCCCChHHHHH---HHhcCchhhhhh-cCCCCCChHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCc
Q 002862 696 KLMEADVALGTLTAKTNWRDYCI---KVKDSPPYMAVA-SNTSGSTPKDLFEDVVEELQKQF--QEDKTRIKDAVKLRKI 769 (873)
Q Consensus 696 ~LL~E~~k~g~I~~~t~W~e~~~---~ikdD~rf~~l~-~~~~gS~~ldLF~d~veeL~k~~--~e~k~~i~d~Lk~~~i 769 (873)
.+|.+.+.+.+-+..-.|++|+. .+++...|.--. ...+-.-..++|..|+.-++.-. .+.|..+.+++.+..+
T Consensus 669 ~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Gespk~tppt~ff~~f~~F~~~~k~~~~ene~k~~le~A~qe~~~ 748 (830)
T KOG1923|consen 669 VILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGESPKTTPPTVFFQLFVRFVRAYKMARQENEQKKKLEAALQEARA 748 (830)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCCCCCCCCCCccHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhh
Confidence 56666665555445556766653 455555554210 01344455788888888776432 3445566667666544
Q ss_pred cc
Q 002862 770 TL 771 (873)
Q Consensus 770 ~~ 771 (873)
+.
T Consensus 749 ~k 750 (830)
T KOG1923|consen 749 EK 750 (830)
T ss_pred cc
Confidence 43
No 71
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=68.72 E-value=21 Score=43.54 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002862 7 NAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVP 44 (873)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~q~~p~~~ 44 (873)
-++.+|+++++.+=...++++|.+|+++..-.--++|+
T Consensus 26 lP~~Ppapa~pnp~qqpppQ~pP~y~~~~~S~a~~~G~ 63 (907)
T KOG4167|consen 26 LPMEPPAPAIPNPYQQPPPQPPPGYTGGLSSPALQVGQ 63 (907)
T ss_pred cCCCCCCCCCCCccCCCCCCCCCCcCccccccccCCCC
Confidence 46677777777777777888888888887777666666
No 72
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=66.26 E-value=3.6e+02 Score=34.12 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcHHHH
Q 002862 590 RKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKV 639 (873)
Q Consensus 590 Re~lF~eyi~~L~kkeke~~~~~rk~~~~ef~~lL~~~~~It~~t~W~ev 639 (873)
|.+|-......|+.--.......++..++.|.+-|... ++....|.+.
T Consensus 324 r~eL~~~i~~~l~~lf~~qL~~L~~~~l~~Fk~~l~~~--lk~~~~Fa~~ 371 (742)
T PF05879_consen 324 RQELESKIDSELQPLFQKQLKHLRKKLLESFKEALSSA--LKSGEDFAEA 371 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCCHHHH
Confidence 33333333333333333333444555666777666532 2334455544
No 73
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=65.99 E-value=2.5 Score=48.35 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=17.7
Q ss_pred CCCCeEEEeCCCCeeeccCChHHH
Q 002862 280 PDGRKYYYNKVTKQSKWSLPDELK 303 (873)
Q Consensus 280 ~~Gr~YyyN~~T~es~We~P~~~~ 303 (873)
...|.|+||...|+|+|++|+...
T Consensus 381 ~~eKLYHyN~~GGtSTW~LP~~w~ 404 (425)
T PF12905_consen 381 DEEKLYHYNPDGGTSTWTLPDSWA 404 (425)
T ss_dssp GG-EEEEEESS-CEEEEE--HHHC
T ss_pred CcceeEEEcCCCCeeeeeCCcccc
Confidence 357899999999999999999875
No 74
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=65.82 E-value=39 Score=40.48 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCCCCC
Q 002862 23 GSMDPPRGFGPPIPS 37 (873)
Q Consensus 23 ~~~~~~~~f~~~~~~ 37 (873)
+..+++.+|++..|+
T Consensus 400 ~a~gp~~q~~~~~p~ 414 (600)
T KOG1676|consen 400 GAGGPQTQFGNYGPH 414 (600)
T ss_pred CcCCCCCCCCCCCCC
Confidence 333433445544433
No 75
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.03 E-value=3.6e+02 Score=33.76 Aligned_cols=14 Identities=21% Similarity=0.416 Sum_probs=6.7
Q ss_pred CCCCcEEE-eCCCCC
Q 002862 270 ASTDWKEF-TSPDGR 283 (873)
Q Consensus 270 ~~~~W~e~-~~~~Gr 283 (873)
+.+-|.-- +|.||+
T Consensus 231 LA~IW~LsDvd~DGk 245 (1118)
T KOG1029|consen 231 LAHIWTLSDVDGDGK 245 (1118)
T ss_pred HhhheeeeccCCCCc
Confidence 34456432 344565
No 76
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=63.39 E-value=5.9 Score=41.52 Aligned_cols=35 Identities=26% Similarity=0.564 Sum_probs=31.2
Q ss_pred ccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHH
Q 002862 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302 (873)
Q Consensus 268 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 302 (873)
..++.+|..-.|-.||+||.+..+.+|-|.-|-+-
T Consensus 92 lPLPpgWav~~T~~grkYYIDHn~~tTHW~HPler 126 (271)
T KOG1891|consen 92 LPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLER 126 (271)
T ss_pred CCCCCCcceeeEecCceeEeecCCCcccccChhhh
Confidence 46889999888889999999999999999999663
No 77
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=60.87 E-value=11 Score=46.25 Aligned_cols=84 Identities=26% Similarity=0.380 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCC-HHHHHHHhhhcCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 002862 736 STPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWT-FEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEE 814 (873)
Q Consensus 736 S~~ldLF~d~veeL~k~~~e~k~~i~d~Lk~~~i~~~s~wt-~ee~~~~l~ed~r~~~l~~~nlk~iFe~li~r~kEKe~ 814 (873)
...+++++..|+.|++.|...+.++. ++..-. .-|. +.+|...-.|..||.+=.. . |++ +||.+
T Consensus 322 E~lL~~hE~Ei~~Lk~~~~~~k~Il~-~v~k~~----~l~~~~~~Le~~~~D~~Rl~~RGg-~-------LLk--EEk~r 386 (619)
T PF03999_consen 322 EELLELHEEEIERLKEEYESRKPILE-LVEKWE----SLWEEMEELEESSKDPSRLNNRGG-H-------LLK--EEKER 386 (619)
T ss_dssp -------------HHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHH-CCGG--------------HHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHhcChhhhccccc-H-------HHH--HHHHH
Confidence 45677888888888877766655443 332211 1121 2345555566667753211 1 221 23333
Q ss_pred HH-HHHHHHHHHHHHHHHhhh
Q 002862 815 KE-AKKRKRLEDEFFDLLCSV 834 (873)
Q Consensus 815 ee-~rk~~r~~~~F~~lL~~~ 834 (873)
+. .++.-++.++.+.+|.+.
T Consensus 387 k~i~k~lPkle~~L~~~l~~w 407 (619)
T PF03999_consen 387 KRIQKKLPKLEEELKKKLEEW 407 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 32 345566667777766553
No 78
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=59.97 E-value=2.4e+02 Score=30.27 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 002862 655 MDRLEIFQEYLNDLEKE 671 (873)
Q Consensus 655 ~drl~lFed~i~~Leke 671 (873)
.++...+.+-|..|++.
T Consensus 33 e~r~~~i~e~i~~Le~~ 49 (247)
T PF06705_consen 33 EQRFQDIKEQIQKLEKA 49 (247)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444455555443
No 79
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=59.39 E-value=63 Score=37.04 Aligned_cols=10 Identities=50% Similarity=0.454 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 002862 478 KLEAKNAFKA 487 (873)
Q Consensus 478 keeAk~aFk~ 487 (873)
|++|-.+|++
T Consensus 472 kDDaY~~FMk 481 (487)
T KOG4672|consen 472 KDDAYNAFMK 481 (487)
T ss_pred chHHHHHHHH
Confidence 4445555544
No 80
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=59.12 E-value=52 Score=37.70 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=4.2
Q ss_pred CCCCCCCCC
Q 002862 55 ASQHFQPGG 63 (873)
Q Consensus 55 ~~~~f~~~~ 63 (873)
.+.+|++++
T Consensus 326 ~p~~~q~p~ 334 (487)
T KOG4672|consen 326 SPTNFQPPY 334 (487)
T ss_pred ccCcCCCCC
Confidence 334555543
No 81
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=55.83 E-value=4.9e+02 Score=34.33 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=5.3
Q ss_pred CCCCCCCCCC
Q 002862 35 IPSQYRPLVP 44 (873)
Q Consensus 35 ~~~q~~p~~~ 44 (873)
.++.|-|.-|
T Consensus 1448 ssp~~s~tsp 1457 (1605)
T KOG0260|consen 1448 SSPGYSPTSP 1457 (1605)
T ss_pred CCCCCCCCCC
Confidence 4555555544
No 82
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=54.19 E-value=1.8e+02 Score=38.65 Aligned_cols=46 Identities=15% Similarity=0.384 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHHHH
Q 002862 548 ARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDEL 601 (873)
Q Consensus 548 are~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~~L 601 (873)
.-++|..++..++ ++..-|-.-...+- .+......+.++++++..+
T Consensus 1443 saeDferlvrssP--NSSi~WI~YMaf~L------elsEiekAR~iaerAL~tI 1488 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSP--NSSILWIRYMAFHL------ELSEIEKARKIAERALKTI 1488 (1710)
T ss_pred CHHHHHHHHhcCC--CcchHHHHHHHHHh------hhhhhHHHHHHHHHHhhhC
Confidence 4677888887654 45666755443221 1222344566666666665
No 83
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=54.12 E-value=75 Score=41.18 Aligned_cols=12 Identities=17% Similarity=0.889 Sum_probs=8.3
Q ss_pred CCCCcHHHHHHH
Q 002862 495 GSDWTWDQALRA 506 (873)
Q Consensus 495 ~s~~tWe~~~~~ 506 (873)
-+.|.|-.+++.
T Consensus 867 ap~W~~~~l~~~ 878 (1639)
T KOG0905|consen 867 APSWDWGNLMDV 878 (1639)
T ss_pred CCCCchhhHHHH
Confidence 467888777665
No 84
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=54.09 E-value=8 Score=44.05 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=35.7
Q ss_pred CCCcEEEEcCCCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeC
Q 002862 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTS 279 (873)
Q Consensus 230 ~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~ 279 (873)
..+|+.+.+.+|++||||++-+.++|-.|.+...+ + ...+..|...-|
T Consensus 115 l~~~h~~~~~~g~r~F~~~i~~ktt~ldd~e~~d~-e-~~~s~~~~~en~ 162 (358)
T KOG0940|consen 115 LAGWHMRFTDTGQRPFYKHILKKTTTLDDREAVDP-E-FYNSLTWIREND 162 (358)
T ss_pred ccceeeEecCCCceehhhhhhcCccccCchhhcCc-c-ccccccccccCC
Confidence 44899999999999999999999999999877322 1 134445554444
No 85
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=54.08 E-value=12 Score=46.01 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002862 589 DRKDMFDDHLDELKQK 604 (873)
Q Consensus 589 eRe~lF~eyi~~L~kk 604 (873)
++...|+.++..|+++
T Consensus 142 ~~l~~l~~~l~~L~~e 157 (619)
T PF03999_consen 142 EELEELRQHLQRLQEE 157 (619)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6888888888888765
No 86
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=53.09 E-value=1.1e+02 Score=37.57 Aligned_cols=6 Identities=33% Similarity=0.816 Sum_probs=2.4
Q ss_pred CCCCCC
Q 002862 82 FRPLMH 87 (873)
Q Consensus 82 ~~~~~~ 87 (873)
|+|++.
T Consensus 416 F~p~a~ 421 (856)
T KOG3582|consen 416 FPPMAP 421 (856)
T ss_pred CCCCCC
Confidence 443333
No 87
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=52.14 E-value=3.8e+02 Score=31.88 Aligned_cols=7 Identities=0% Similarity=-0.339 Sum_probs=3.7
Q ss_pred CCccccC
Q 002862 174 MSQMHVP 180 (873)
Q Consensus 174 ~~~~~~~ 180 (873)
++++.+.
T Consensus 465 p~~~~al 471 (569)
T KOG3671|consen 465 PPARPAL 471 (569)
T ss_pred CCCcccc
Confidence 4455555
No 88
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=51.13 E-value=1.3e+02 Score=36.11 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=21.4
Q ss_pred HHHhHHHHHHHHHhcccCCCcccHHHHHHHhcC-ChhhhhcC
Q 002862 545 LKKARDDYKKMLEESVELTSSTRWSKAVTMFEN-DERFKALE 585 (873)
Q Consensus 545 ~kkare~F~~lLee~~~i~~~trW~~a~~~~~~-Dprfkav~ 585 (873)
..+.|+..+..+.. .+|+-...--+.+++|+. -+||++|+
T Consensus 54 LQRlRdQIKtW~ss-~dIKDK~~L~d~RrlIE~~MErfK~vE 94 (575)
T KOG2150|consen 54 LQRLRDQIKTWQSS-SDIKDKDSLLDNRRLIEQRMERFKAVE 94 (575)
T ss_pred HHHHHHHHHhhhcc-cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665543 355544444445555533 47777653
No 89
>KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms]
Probab=51.01 E-value=95 Score=38.98 Aligned_cols=17 Identities=29% Similarity=0.128 Sum_probs=11.9
Q ss_pred ccCCCCCCCcCCCccch
Q 002862 193 SQSTVSSTPVQPTDEQM 209 (873)
Q Consensus 193 ~~~~~~~~~~~~~~~~~ 209 (873)
.-+.++.+|++.|+-|+
T Consensus 892 ~~tsr~ssplQlnllqe 908 (1114)
T KOG3753|consen 892 LFTSRSSSPLQLNLLQE 908 (1114)
T ss_pred cccCCCCCHHHHHHHHH
Confidence 34567788888887663
No 90
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=50.23 E-value=3.4e+02 Score=33.51 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=8.6
Q ss_pred ceeecCCCcccccCCCCc
Q 002862 243 RYYFNKRTRVSTWDKPFE 260 (873)
Q Consensus 243 ~YYyN~~T~~stWe~P~~ 260 (873)
+||-|..---+.=-+|-+
T Consensus 569 ~~fs~~tp~ntp~~~ppd 586 (856)
T KOG3582|consen 569 IYFSNSTPLNTPLNKPPD 586 (856)
T ss_pred cccccCCccCCCCCCCCC
Confidence 566564444444444433
No 91
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=48.10 E-value=18 Score=43.96 Aligned_cols=106 Identities=12% Similarity=0.127 Sum_probs=69.6
Q ss_pred ccccCCCCCCCcCCCccchhccccCCCCCCCCCCCCCCCCCCcEEEEcC-CCCceeecCCCcccccCC-C---Ccch---
Q 002862 191 SVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSA-DGRRYYFNKRTRVSTWDK-P---FELM--- 262 (873)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~W~~~~~~-~Gr~YYyN~~T~~stWe~-P---~~~~--- 262 (873)
.....-.+..++|+...........+ -.........|..+++. .|+.|||+..|+.++|+. + ....
T Consensus 237 l~~e~d~~~~~~~~~~~~~~~~~~~g------~~~~pl~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 310 (650)
T KOG1450|consen 237 LPAEIDDPPEPEYAGYTEQTEILSPG------RTARPLKSTVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQ 310 (650)
T ss_pred ccccccCccchhhhhhhhhhhhcccc------cccccCCCcccccchhhcccccceeecccCcccccCCCCccccccCCC
Confidence 33345566667777766654421111 01112225679999996 799999999999999995 1 1111
Q ss_pred hh-----hh--hccCCCCcEEEeCC-CCCeEEEeCCCCeeeccCChHH
Q 002862 263 TT-----IE--RADASTDWKEFTSP-DGRKYYYNKVTKQSKWSLPDEL 302 (873)
Q Consensus 263 ~~-----~e--~~~~~~~W~e~~~~-~Gr~YyyN~~T~es~We~P~~~ 302 (873)
++ .+ .......|..+... .+...|+|..++++.|...-..
T Consensus 311 sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~net~~~d~~~~ 358 (650)
T KOG1450|consen 311 SPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSHNETSFEDWSSN 358 (650)
T ss_pred CcccchhhhccccccCCccceeeeeecCCceeeecCCCCccccchhhc
Confidence 11 01 12467789888875 6889999999999999987554
No 92
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=47.50 E-value=2.4e+02 Score=28.82 Aligned_cols=166 Identities=14% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002862 546 KKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLE 625 (873)
Q Consensus 546 kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~~L~kkeke~~~~~rk~~~~ef~~lL~ 625 (873)
+.+.++|..+|. -|....-=.-+...+.+|+.|++...- -+-.-|.+.+.++..--+ ..+|..+|+
T Consensus 2 ~~L~~d~~dfl~---lIp~~~i~~i~~~Y~~~D~efq~~~~y-l~s~~f~~l~~~l~~~pE----------~~~l~~yL~ 67 (179)
T PF06757_consen 2 RSLQEDFQDFLD---LIPMEEIQDIVQRYYLEDAEFQAAVRY-LNSSEFKQLWQQLEALPE----------VKALLDYLE 67 (179)
T ss_pred hhHHHHHHHHHH---hcCHHHHHHHHHHHHHcCHHHHHHHHH-HcChHHHHHHHHHHcCHH----------HHHHHHHHH
Q ss_pred hccccCCCCcHHHHHHHhh----hhhhhhcC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002862 626 SCDFIKANTQWRKVQDRLE----ADERCSRL-DKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEA 700 (873)
Q Consensus 626 ~~~~It~~t~W~ev~~~l~----~D~r~~~l-~~~drl~lFed~i~~Leke~ee~kr~~k~~~rR~eRk~Rd~F~~LL~E 700 (873)
..+ |....-...+...|. .-...... .....-.++.|.+.-| -++.+++|..+
T Consensus 68 ~~g-ldv~~~i~~i~~~l~~~~~~p~~~~~~~~~~g~~g~~~di~~~l---------------------P~~~l~aL~~~ 125 (179)
T PF06757_consen 68 SAG-LDVYYYINQINDLLGLPPLNPTPSLSCSRGGGLNGFVDDILALL---------------------PRDKLRALYEE 125 (179)
T ss_pred HCC-CCHHHHHHHHHHHHcCCcCCCCcccccccCCCHHHHHHHHHHHC---------------------CHHHHHHHHHH
Q ss_pred HhhcCccCCCCChHHHHHHHhcCchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 002862 701 DVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITL 771 (873)
Q Consensus 701 ~~k~g~I~~~t~W~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~veeL~k~~~e~k~~i~d~Lk~~~i~~ 771 (873)
+++.+.. |++|+..|+++. |..+++.+ .....-+.+...|++.|+.+
T Consensus 126 K~~~s~~-----F~~f~~~l~S~e-----------------f~~~~~~~--~~~~~~~~~~~~L~~~Gvdv 172 (179)
T PF06757_consen 126 KLATSPE-----FAEFVEALRSPE-----------------FQQLYNAL--WASPEFQRLLNELRENGVDV 172 (179)
T ss_pred HHHCCHH-----HHHHHHHHcCHH-----------------HHHHHHHH--HcCHHHHHHHHHHHHcCCCH
No 93
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=45.94 E-value=75 Score=36.87 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Q 002862 520 GERKTAFNEYLGQKKKQDAEERRLKLKKARDDY 552 (873)
Q Consensus 520 ~ERKqlFeeYl~~~~k~E~eekr~~~kkare~F 552 (873)
..-+|.|++-+.+.+|+|+.+++++++...+.+
T Consensus 232 ~kHrqeyeei~~qAkkre~k~~ker~k~~eer~ 264 (586)
T KOG2223|consen 232 KKHRQEYEEIVKQAKKRERKEAKERKKMVEERN 264 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999988888777666555555
No 94
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.59 E-value=79 Score=35.71 Aligned_cols=32 Identities=38% Similarity=0.557 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCC
Q 002862 88 PLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPP 121 (873)
Q Consensus 88 p~~~~p~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 121 (873)
|.+-+|++|.|++.|||.+-++-|. -.+|+.+
T Consensus 425 pt~~~PprPppqggppP~g~~~~p~--~~~hl~~ 456 (488)
T KOG3895|consen 425 PTRRLPPRPPPQGGPPPRGHMSDPV--GSRHLDH 456 (488)
T ss_pred CCCCCCCCCCCCCCCCCccccCCcc--ccccCCC
Confidence 3333445556666666655333333 2344543
No 95
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=44.04 E-value=19 Score=41.82 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=31.9
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 302 (873)
.++.||......+|-+.|||..|+..+|.+|-.+
T Consensus 154 pLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYfl 187 (650)
T KOG4334|consen 154 PLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYFL 187 (650)
T ss_pred cCCCceEEEeecCCCceEEeeeeeeEeccCceee
Confidence 5899999999999999999999999999999765
No 96
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.99 E-value=2.1e+02 Score=31.39 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcHHHHHHHhhhhhhhhc
Q 002862 586 RERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSR 651 (873)
Q Consensus 586 ~e~eRe~lF~eyi~~L~kkeke~~~~~rk~~~~ef~~lL~~~~~It~~t~W~ev~~~l~~D~r~~~ 651 (873)
+..++...|......++.+.+++.....+.++...+.+ ...+-.|..++..++.++.-..
T Consensus 85 s~eE~~~~~~~i~ekik~k~~k~~e~e~~E~~~~~k~~------~ks~~~~~~a~~r~q~~e~~~~ 144 (290)
T KOG2689|consen 85 SEEEKKAQTKRILEKIKQKQIKREELELREALEREKQR------RKSGDEMSAAKRRLQDDEMRRA 144 (290)
T ss_pred ChHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhHHhh------hhcccHHHHHHHHHHHHHHHHH
Confidence 45567666666555554443322222222222222222 2344578888888776664443
No 97
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=42.28 E-value=2.8e+02 Score=32.19 Aligned_cols=8 Identities=25% Similarity=0.517 Sum_probs=4.2
Q ss_pred hcCchhhh
Q 002862 721 KDSPPYMA 728 (873)
Q Consensus 721 kdD~rf~~ 728 (873)
.|+.||.+
T Consensus 324 mdeery~N 331 (552)
T KOG2129|consen 324 MDEERYLN 331 (552)
T ss_pred HHHHHHHh
Confidence 35555554
No 98
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=41.40 E-value=3.2e+02 Score=32.61 Aligned_cols=8 Identities=38% Similarity=0.343 Sum_probs=3.6
Q ss_pred CCCCCccc
Q 002862 171 QQPMSQMH 178 (873)
Q Consensus 171 ~~~~~~~~ 178 (873)
|+||+||.
T Consensus 613 fvpP~qmt 620 (694)
T KOG4264|consen 613 FVPPPQMT 620 (694)
T ss_pred ccCccccc
Confidence 34444444
No 99
>PRK04863 mukB cell division protein MukB; Provisional
Probab=40.71 E-value=1.2e+03 Score=32.25 Aligned_cols=93 Identities=12% Similarity=0.152 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCccCCCCChHHHHHHHhcCchhhhhhcCCCC
Q 002862 656 DRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSG 735 (873)
Q Consensus 656 drl~lFed~i~~Leke~ee~kr~~k~~~rR~eRk~Rd~F~~LL~E~~k~g~I~~~t~W~e~~~~ikdD~rf~~l~~~~~g 735 (873)
+.++-|.+.+.+++.+..+.++..... .......+..+..++.+ .|+|....-|.-+...|...+.+..+..+
T Consensus 442 ~~LenF~aklee~e~qL~elE~kL~~l-ea~leql~~~~~~l~~~---~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~--- 514 (1486)
T PRK04863 442 DWLEEFQAKEQEATEELLSLEQKLSVA-QAAHSQFEQAYQLVRKI---AGEVSRSEAWDVARELLRRLREQRHLAEQ--- 514 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---cCCcCHHHHHHHHHHHHHHhHHHHHHHHh---
Confidence 345555555555544443332221111 11112234455555544 48999999999999999988877766532
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH
Q 002862 736 STPKDLFEDVVEELQKQFQEDKT 758 (873)
Q Consensus 736 S~~ldLF~d~veeL~k~~~e~k~ 758 (873)
+.-......+|+++++.+++
T Consensus 515 ---~~~~~~~~~~l~~~~~~q~~ 534 (1486)
T PRK04863 515 ---LQQLRMRLSELEQRLRQQQR 534 (1486)
T ss_pred ---hHHHHHHHHHHHHHHHHHHH
Confidence 23355666677776655544
No 100
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.14 E-value=7.5e+02 Score=29.62 Aligned_cols=84 Identities=13% Similarity=0.272 Sum_probs=47.5
Q ss_pred cCChHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChh----hh-h
Q 002862 516 LRTLGERKTAFNEYLGQKKKQ-------DAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDER----FK-A 583 (873)
Q Consensus 516 l~~~~ERKqlFeeYl~~~~k~-------E~eekr~~~kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dpr----fk-a 583 (873)
|....--+|+|+.||.=-=.+ .-|-+-.....++.-+..++--|++++...+|..|.....+-.. |. |
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 444455677888876511100 11223344567788888887777788888888887765443221 21 2
Q ss_pred ---cCChHHHHHHHHHHHH
Q 002862 584 ---LERERDRKDMFDDHLD 599 (873)
Q Consensus 584 ---v~~e~eRe~lF~eyi~ 599 (873)
+.++.+-+.+|..|-.
T Consensus 234 ie~~~~d~~~e~lfvaFA~ 252 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAE 252 (677)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 2234455666666543
No 101
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=38.98 E-value=7.9e+02 Score=29.85 Aligned_cols=44 Identities=14% Similarity=0.363 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHHHhhcCccCCCCChHHHHHHHhcCchhhhhhcCCCCCChHHHHHHHHHHHH
Q 002862 689 KNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQ 750 (873)
Q Consensus 689 k~Rd~F~~LL~E~~k~g~I~~~t~W~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~veeL~ 750 (873)
.+|+-|+.-|..-++ |+.. + |.+++ .++..+....|..-|.+++
T Consensus 238 ~~r~~F~~eL~~Ai~-----------eiRa----q--ye~~~-~~nR~diE~~Y~~kI~~i~ 281 (546)
T KOG0977|consen 238 DNREYFKNELALAIR-----------EIRA----Q--YEAIS-RQNRKDIESWYKRKIQEIR 281 (546)
T ss_pred cchHHHHHHHHHHHH-----------HHHH----H--HHHHH-HHhHHHHHHHHHHHHHHHH
Confidence 578889887776532 2222 1 33332 2344556677888887775
No 102
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
Probab=37.41 E-value=1e+03 Score=31.22 Aligned_cols=99 Identities=16% Similarity=0.268 Sum_probs=52.9
Q ss_pred CCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhcccCCCcccHHH-H-
Q 002862 494 VGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSK-A- 571 (873)
Q Consensus 494 V~s~~tWe~~~~~i~~DpRy~al~~~~ERKqlFeeYl~~~~k~E~eekr~~~kkare~F~~lLee~~~i~~~trW~~-a- 571 (873)
+-.+|+.+.+++.+-+|=-|....+ +.-++|+.|+... +|....+|.+ +
T Consensus 379 ~~~NW~~e~vl~llKt~~~f~~~~~--~~iD~lEnYvl~~---------------------------GI~G~~kw~k~f~ 429 (1108)
T COG3857 379 KRYNWRYEPVLNLLKTDVLFDSNES--EDIDLLENYVLAA---------------------------GIKGKKKWTKLFT 429 (1108)
T ss_pred HHhccchhHHHHHHHhcccccccch--HHHHHHHHHHHHh---------------------------ccccchhhhhHhh
Confidence 4456777777776666644443332 5566777777643 4556666666 2
Q ss_pred HHHhcCChhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002862 572 VTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESC 627 (873)
Q Consensus 572 ~~~~~~Dprfkav~~e~eRe~lF~eyi~~L~kkeke~~~~~rk~~~~ef~~lL~~~ 627 (873)
.+.|.+ +....-..+++..++.-|..=++-.+++.-+....+|..+|+..
T Consensus 430 ~~~~~~------~~~~~~lne~r~~il~pL~~l~~~sr~kt~~~~~~al~~~Le~~ 479 (1108)
T COG3857 430 YEHFRK------IENLERLNETRLDILHPLETLLKMSRAKTVKELAQALYEFLEEG 479 (1108)
T ss_pred HHHhhc------hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223333 22233345566666666655444112222333445677777653
No 103
>PRK10263 DNA translocase FtsK; Provisional
Probab=36.98 E-value=2e+02 Score=38.32 Aligned_cols=6 Identities=17% Similarity=0.783 Sum_probs=2.6
Q ss_pred CCCCCC
Q 002862 37 SQYRPL 42 (873)
Q Consensus 37 ~q~~p~ 42 (873)
+.|.|.
T Consensus 743 ~~~~~~ 748 (1355)
T PRK10263 743 PLFTPI 748 (1355)
T ss_pred CCcCCC
Confidence 345543
No 104
>PHA03246 large tegument protein UL36; Provisional
Probab=36.49 E-value=9.2e+02 Score=34.49 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCccCCCC-Ch-HHHHHHHhcCchhhhhhcCCCCCChHHHHHHHHHHHH
Q 002862 694 FRKLMEADVALGTLTAKT-NW-RDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQ 750 (873)
Q Consensus 694 F~~LL~E~~k~g~I~~~t-~W-~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~veeL~ 750 (873)
|--||....+..++...+ -| +....+|-.++- ....+|+-|++.|.+-|+.|.
T Consensus 1726 aALLL~~vEet~ELDvqAVeWL~hAr~IIDSHpL----T~rIDg~GPm~~yaeRIDaL~ 1780 (3095)
T PHA03246 1726 AALLLTKVEETKELDTQTVEWLKHAESVIDSHDL----TVRIDESGPMTIYAERIDALV 1780 (3095)
T ss_pred HHHHHHHhhhccccCHHHHHHHHHHHHHhccCcc----ccccCCCCCcHHHHHHHHHHH
Confidence 334444433333443322 47 445566666663 224578899999999999875
No 105
>KOG4822 consensus Predicted nuclear membrane protein involved in mRNA transport and sex determination via splicing modulation [RNA processing and modification; Signal transduction mechanisms]
Probab=36.03 E-value=1e+02 Score=39.83 Aligned_cols=6 Identities=33% Similarity=0.517 Sum_probs=2.5
Q ss_pred CCCCCC
Q 002862 130 QALSSY 135 (873)
Q Consensus 130 ~~~~~~ 135 (873)
+++.+|
T Consensus 1828 ~~~g~y 1833 (1906)
T KOG4822|consen 1828 QQQGQY 1833 (1906)
T ss_pred CCCccc
Confidence 334444
No 106
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=34.48 E-value=6.4e+02 Score=30.60 Aligned_cols=19 Identities=16% Similarity=0.515 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 002862 656 DRLEIFQEYLNDLEKEEEE 674 (873)
Q Consensus 656 drl~lFed~i~~Leke~ee 674 (873)
|..++..+.|++|+++.+.
T Consensus 122 d~~~wi~~~ideLe~q~d~ 140 (575)
T KOG2150|consen 122 DTMDWISNQIDELERQVDS 140 (575)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4557788899999887653
No 107
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=33.77 E-value=1.9e+02 Score=31.93 Aligned_cols=115 Identities=22% Similarity=0.298 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHhhcCccCCCCChHHHHHHHhcCchhhhhhcCCCCCChHHHHHHHHHHHH--HHHHHHHHHHHHHHHhc
Q 002862 690 NRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQ--KQFQEDKTRIKDAVKLR 767 (873)
Q Consensus 690 ~Rd~F~~LL~E~~k~g~I~~~t~W~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~veeL~--k~~~e~k~~i~d~Lk~~ 767 (873)
+.++....|.+.. +..+..|-|-..+....+-...+ .|+..|+..|+. ++..+.=......|+..
T Consensus 33 n~~~L~~kl~ei~----~~~~~pWiE~L~vts~~~~~~~~---------~d~~dD~~RE~aFy~qAl~av~~a~~~L~~~ 99 (271)
T PF05890_consen 33 NKEALKQKLKEIK----LPKKLPWIETLDVTSPEPTDEQI---------KDVNDDLKRELAFYKQALEAVKEARPRLKKL 99 (271)
T ss_pred CHHHHHHHHHHhc----ccCCCCCeeEEeeecCccchhhh---------ccccccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455666666642 24466787655544332211111 223344444331 11111111234456777
Q ss_pred CcccCCCCCHHHHHHHhhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002862 768 KITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEF 827 (873)
Q Consensus 768 ~i~~~s~wt~ee~~~~l~ed~r~~~l~~~nlk~iFe~li~r~kEKe~ee~rk~~r~~~~F 827 (873)
+|.+.--..| |..+|.. |..|..|-..|+...+..++.|.+|+.|....|
T Consensus 100 gip~~RP~DY--fAEMvKS--------D~HM~KVr~kLl~~~~~ie~~E~~rk~Re~KKf 149 (271)
T PF05890_consen 100 GIPFKRPDDY--FAEMVKS--------DEHMEKVRQKLLKEQKRIEASEEARKQRELKKF 149 (271)
T ss_pred CCCccCCCcc--hHHHhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777654432 5666664 466777888888776666555555555544444
No 108
>PF05782 ECM1: Extracellular matrix protein 1 (ECM1); InterPro: IPR008605 This family consists of several eukaryotic extracellular matrix protein 1 (ECM1) sequences. ECM1 has been shown to regulate endochondral bone formation, stimulate the proliferation of endothelial cells and induce angiogenesis. Mutations in the ECM1 gene can cause lipoid proteinosis, a disorder which causes generalised thickening of skin, mucosae and certain viscera. Classical features include beaded eyelid papules and laryngeal infiltration leading to hoarseness [].; GO: 0005576 extracellular region
Probab=33.72 E-value=1.4e+02 Score=34.95 Aligned_cols=13 Identities=38% Similarity=0.365 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCcc
Q 002862 57 QHFQPGGQGGLIM 69 (873)
Q Consensus 57 ~~f~~~~~~~p~~ 69 (873)
|||+-||.+.||+
T Consensus 40 qh~~EVGYAAPPs 52 (544)
T PF05782_consen 40 QHFQEVGYAAPPS 52 (544)
T ss_pred cchhhhcccCCCC
Confidence 4555555555544
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=33.60 E-value=2e+02 Score=35.37 Aligned_cols=12 Identities=25% Similarity=0.183 Sum_probs=6.5
Q ss_pred CCHHHHHHHhhh
Q 002862 775 WTFEDFKASVLE 786 (873)
Q Consensus 775 wt~ee~~~~l~e 786 (873)
.+++||...+.+
T Consensus 879 v~l~dI~~FF~d 890 (944)
T KOG4307|consen 879 VTLEDIVEFFND 890 (944)
T ss_pred ccHHHHHHHhcc
Confidence 345666665543
No 110
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=32.57 E-value=1.8e+02 Score=37.90 Aligned_cols=6 Identities=0% Similarity=0.052 Sum_probs=2.7
Q ss_pred HHHHhh
Q 002862 828 FDLLCS 833 (873)
Q Consensus 828 ~~lL~~ 833 (873)
-.+|+.
T Consensus 700 ~~~~~~ 705 (1021)
T PTZ00266 700 HGYMKN 705 (1021)
T ss_pred hHHhhc
Confidence 344544
No 111
>PF04947 Pox_VLTF3: Poxvirus Late Transcription Factor VLTF3 like ; InterPro: IPR007031 Members of this family are approximately 26 kDa, and are involved in trans-activation of late transcription [].; GO: 0046782 regulation of viral transcription
Probab=31.59 E-value=3.2e+02 Score=28.04 Aligned_cols=119 Identities=19% Similarity=0.279 Sum_probs=61.1
Q ss_pred ChHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCcccCCCCCHHHHHH---HhhhcCCCCCCCh---hhHHHHHHHHH
Q 002862 737 TPKDLFEDVVEELQKQFQ----EDKTRIKDAVKLRKITLSSTWTFEDFKA---SVLEDATSPPISD---VNLKLIFDDLL 806 (873)
Q Consensus 737 ~~ldLF~d~veeL~k~~~----e~k~~i~d~Lk~~~i~~~s~wt~ee~~~---~l~ed~r~~~l~~---~nlk~iFe~li 806 (873)
-+.++++++.++|++.-. -.+..+.++||+.+++ . .++.+.- .|.+. .-..++. ..+..+|+.++
T Consensus 31 i~~~V~~~l~~~l~k~~i~~~~it~~~V~~~LK~l~~~--K--~Y~~v~~I~~~ltg~-~p~~ls~~~e~~l~~~F~~~~ 105 (171)
T PF04947_consen 31 IPDEVYEELRKELKKYNIDISDITKNHVREFLKKLGYS--K--YYEHVFLILNILTGK-PPPNLSSELEERLMIIFDELQ 105 (171)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHcCHHHHHHHHHHcCCc--c--hHhHHHHHHHHHcCC-CCcccCHHHHHHHHHHHHHHH
Confidence 456777777777754321 1345788899998852 1 2344433 34332 2345643 45678898888
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHhhhchhh----hhhc-cCCcccchHHHHhhcChH
Q 002862 807 IKVKEK--EEKEAKKRKRLEDEFFDLLCSVKVRY----LQLL-HGKIADNFWRVAKSSVPL 860 (873)
Q Consensus 807 ~r~kEK--e~ee~rk~~r~~~~F~~lL~~~k~It----~~~~-~~~~~d~~~~~~~~~~~~ 860 (873)
.-.-+- +++.----.=....|.++|.....+. +++. ....+|.-|..++..|.-
T Consensus 106 ~~~~~~~~~rkn~iny~yvL~kll~~l~~~~~l~~f~~lK~~~K~~~~D~iwkkic~~L~w 166 (171)
T PF04947_consen 106 KPFDKHKKERKNFINYSYVLYKLLELLGYDENLPDFPLLKNYTKNNSQDEIWKKICSELGW 166 (171)
T ss_pred HHHHHhccchhcccchHHHHHHHHHHhCCCCCCcchhcccchhhchhHHHHHHHHHHHcCC
Confidence 754331 11000000112234555553332222 2121 123568999999887753
No 112
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=31.43 E-value=47 Score=37.53 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=38.6
Q ss_pred EcCCCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCC
Q 002862 237 TSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLP 299 (873)
Q Consensus 237 ~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P 299 (873)
.+.+|++|.+|..|++..|+.........-......+-.-..+.+|..|-++..||+..|..+
T Consensus 285 ~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 285 TDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred ECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 345788888888888888876421100000000112223334578999999999999999854
No 113
>smart00818 Amelogenin Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth. They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions w
Probab=31.08 E-value=5.5e+02 Score=26.06 Aligned_cols=99 Identities=27% Similarity=0.336 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCccCCCCC--CCCCCCCCCCCCCCCCCCCCCCC
Q 002862 21 MVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQG-GLIMNAGFP--SQPLQPPFRPLMHPLPARPGPPA 97 (873)
Q Consensus 21 ~~~~~~~~~~f~~~~~~q~~p~~~~~~~~~~~~~~~~~f~~~~~~-~p~~~~g~p--~q~~~~~~~~~~~p~~~~p~~~~ 97 (873)
++ +.+.+.+| ..-++.--|+++++|+. .++-++-+.+|++ +.+.+--++ +++.|-+|.+++.--++...+.+
T Consensus 41 Pv-sqq~p~~~-~l~~~HhiP~l~~~qP~---~PQqP~mp~Pg~h~~~P~~~hq~~lP~P~Q~P~qPq~~qp~~~~~Pmq 115 (165)
T smart00818 41 PV-SQQHPPTH-TLQPHHHIPVLPAQQPV---IPQQPMMPVPGQHSMTPTQHHQPNLPPPAQQPFQPQPLQPPQPQQPMQ 115 (165)
T ss_pred cc-cccCCCcc-cccccccCCCccccCCC---CCCCCCCCCCCCCCcCCCCCCCcCCCCCccCCcCCCCCCCCCCCCCcC
Q ss_pred CCCCCCCCCccCCCCCCCCCCCC-CCCCCC
Q 002862 98 PSHVPPPPQVMSLPNAQPSNHIP-PSSLPR 126 (873)
Q Consensus 98 ~~~~~~~~q~~~~~~~~~~~~~~-~~~~~~ 126 (873)
+.....+.+ +++...+|-+|= ..++|.
T Consensus 116 pq~p~~p~~--p~~P~~P~~Pmfp~qPlPP 143 (165)
T smart00818 116 PQPPVHPQP--PLPPQPPLPPIFPMQPLPP 143 (165)
T ss_pred CCCCCCCcC--CCCCCCCCCCccCCCCCCC
No 114
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.03 E-value=2.6e+02 Score=34.57 Aligned_cols=8 Identities=13% Similarity=0.193 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 002862 47 QPQHYVPM 54 (873)
Q Consensus 47 ~~~~~~~~ 54 (873)
+++.++|.
T Consensus 392 ~~~~~~~~ 399 (624)
T PRK14959 392 GGAATIPT 399 (624)
T ss_pred CCCCCCCC
Confidence 33344443
No 115
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=30.82 E-value=17 Score=44.28 Aligned_cols=29 Identities=31% Similarity=0.720 Sum_probs=26.9
Q ss_pred CcEEEEcCCCCceeecCCCcccccCCCCc
Q 002862 232 DWKEHTSADGRRYYFNKRTRVSTWDKPFE 260 (873)
Q Consensus 232 ~W~~~~~~~Gr~YYyN~~T~~stWe~P~~ 260 (873)
-|+...+++--.||.|+.|..++|++|..
T Consensus 353 pw~rais~nkvpyyinh~~q~t~wdhp~~ 381 (966)
T KOG4286|consen 353 PWERAISPNKVPYYINHETQTTCWDHPKM 381 (966)
T ss_pred cchhccCccccchhhcccchhhhccchHH
Confidence 39999999999999999999999999964
No 116
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=28.82 E-value=5.9e+02 Score=31.64 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccC
Q 002862 115 PSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFA 153 (873)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (873)
|...|.++..+.++. -++..+++.+.+++....|.|.
T Consensus 242 pl~q~SG~~~~n~p~--vs~~e~~~~gSgnp~~q~~~~~ 278 (944)
T KOG4307|consen 242 PLKQFSGNKLGNNPD--VSSRENHIQGSGNPRVQGGDSW 278 (944)
T ss_pred CccccCCCCCCCCCC--cCcCccccccCCChhhhCCchh
Confidence 344454444443333 3344566777777766677544
No 117
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=27.86 E-value=3.1e+02 Score=34.47 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCC
Q 002862 113 AQPSNHIPPSSL 124 (873)
Q Consensus 113 ~~~~~~~~~~~~ 124 (873)
+++|.+||+++.
T Consensus 1257 iq~nvplPPHp~ 1268 (1387)
T KOG1016|consen 1257 IQPNVPLPPHPG 1268 (1387)
T ss_pred CCCCCCCCCCCC
Confidence 446666665443
No 118
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=27.83 E-value=1.3e+03 Score=29.27 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 002862 609 AQEERKRNIIEYRKFLES 626 (873)
Q Consensus 609 ~~~~rk~~~~ef~~lL~~ 626 (873)
.+.++..+..++..||-+
T Consensus 655 ~k~~re~a~N~LE~~l~e 672 (902)
T KOG0104|consen 655 EKSEREEASNELEAFLFE 672 (902)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344555666667666643
No 119
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=27.78 E-value=65 Score=36.83 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=36.3
Q ss_pred EEcCCCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccC
Q 002862 236 HTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSL 298 (873)
Q Consensus 236 ~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~ 298 (873)
..+.+|++|-+|..|++..|..+..............+-.-+.+.+|..|.+|..||+..|..
T Consensus 299 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 299 LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 334566666677777777775543210000000011233434567899999999999999974
No 120
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=27.65 E-value=1.4e+02 Score=26.02 Aligned_cols=20 Identities=30% Similarity=0.616 Sum_probs=13.1
Q ss_pred HHHHHHHHHhHH---HHHHHHHH
Q 002862 681 EELSKTERKNRD---EFRKLMEA 700 (873)
Q Consensus 681 ~~~rR~eRk~Rd---~F~~LL~E 700 (873)
...++.+|+.|+ .|-.||.+
T Consensus 41 ~~~~~~erk~rEKnksFeELL~e 63 (70)
T PF13025_consen 41 RARRREERKEREKNKSFEELLNE 63 (70)
T ss_pred HHHHHHHHHHHHhhcCHHHHHhc
Confidence 334455666664 68888876
No 121
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=27.51 E-value=59 Score=22.89 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=18.5
Q ss_pred eCCCCCeEEEeCCCCeeeccCC
Q 002862 278 TSPDGRKYYYNKVTKQSKWSLP 299 (873)
Q Consensus 278 ~~~~Gr~YyyN~~T~es~We~P 299 (873)
.+.+|..|-+|..||+..|..+
T Consensus 12 ~~~~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 12 GSTDGTLYALDAKTGEILWTYK 33 (33)
T ss_pred EcCCCEEEEEEcccCcEEEEcC
Confidence 3457999999999999999853
No 122
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=26.84 E-value=42 Score=34.74 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=43.8
Q ss_pred cEEEEcCCCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccC
Q 002862 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSL 298 (873)
Q Consensus 233 W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~ 298 (873)
..-..+.+|.+|-||..||+..|.....-..... .....+-.-+.+.+|+.|-+|..||+..|..
T Consensus 38 ~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp EEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eeecccccccccceeeeEecccCCcceeeee
Confidence 3333357899999999999999987642210000 1122233344456789999999999999994
No 123
>cd03490 Topoisomer_IB_N_1 Topoisomer_IB_N_1: A subgroup of the N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB. Topo IB proteins include the monomeric yeast and human topo I and heterodimeric topo I from Leishmania donvanni. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit religation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. In addition to differences in structure and some biochemical properties, Trypanoso
Probab=26.29 E-value=1.3e+02 Score=31.83 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=20.7
Q ss_pred HHHHHHhhhcC---CCCCCChhhHHHHHHHHHHHHH
Q 002862 778 EDFKASVLEDA---TSPPISDVNLKLIFDDLLIKVK 810 (873)
Q Consensus 778 ee~~~~l~ed~---r~~~l~~~nlk~iFe~li~r~k 810 (873)
.||+++|.... ..+++++.+...||+.+.....
T Consensus 63 ~df~~~l~~~~~~~~i~~f~kcDF~~i~~~~~~~ke 98 (217)
T cd03490 63 KVFVNSFEKDHKFIRRCKLSDADFSLIKNHLEEEKE 98 (217)
T ss_pred HHHHHHhccccCcccccchhhCCCHHHHHHHHHHHH
Confidence 56666664433 3456677777788887766543
No 124
>cd03489 Topoisomer_IB_N_LdtopoI_like Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the heterodimeric topo I from Leishmania donvanni. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit re-ligation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. In addition to differences in structure and some biochemical properties, Trypanosomatid parasite topo I differ from human
Probab=26.27 E-value=1.3e+02 Score=31.70 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=20.8
Q ss_pred HHHHHHhhhcC-CCCCCChhhHHHHHHHHHHHHH
Q 002862 778 EDFKASVLEDA-TSPPISDVNLKLIFDDLLIKVK 810 (873)
Q Consensus 778 ee~~~~l~ed~-r~~~l~~~nlk~iFe~li~r~k 810 (873)
.||+++|.... ..+++++.+...||+.+.....
T Consensus 63 ~df~~~l~~~~~~I~~f~kcDF~~i~~~~~~~~e 96 (212)
T cd03489 63 ESWREILDKRHHPIRKLELCDFTPIYEWHLREKE 96 (212)
T ss_pred HHHHHHhcccCccccchhhCCCHHHHHHHHHHHH
Confidence 56666665443 3446677777788887766543
No 125
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.22 E-value=6.3e+02 Score=31.13 Aligned_cols=8 Identities=25% Similarity=0.256 Sum_probs=3.3
Q ss_pred CCCCCCCC
Q 002862 137 PGLGGLGR 144 (873)
Q Consensus 137 ~~~~~~~~ 144 (873)
-+.||..+
T Consensus 563 ~~~gg~~P 570 (861)
T KOG3161|consen 563 EEQGGRKP 570 (861)
T ss_pred cccCCCCC
Confidence 33444443
No 126
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=25.97 E-value=1.6e+03 Score=29.48 Aligned_cols=50 Identities=24% Similarity=0.438 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcHHHHHHH
Q 002862 591 KDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDR 642 (873)
Q Consensus 591 e~lF~eyi~~L~kkeke~~~~~rk~~~~ef~~lL~~~~~It~~t~W~ev~~~ 642 (873)
..+-.+-|..++++.++. +.+..+++....+++....+.....|..|...
T Consensus 230 i~~~~e~i~~l~k~i~e~--~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~ 279 (1074)
T KOG0250|consen 230 IDLKEEEIKNLKKKIKEE--EEKLDNLEQLEDLKENLEQLKAKMAWAWVNEV 279 (1074)
T ss_pred HHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555544432 22233444444444433345566789888654
No 127
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=25.85 E-value=9.8e+02 Score=26.88 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=11.6
Q ss_pred CCChHHHHHHHhcCchhhhhhcCCCCC
Q 002862 710 KTNWRDYCIKVKDSPPYMAVASNTSGS 736 (873)
Q Consensus 710 ~t~W~e~~~~ikdD~rf~~l~~~~~gS 736 (873)
.++.++-...-.+++. + +.+||
T Consensus 204 esk~EE~~krH~~HpK---v--nhPGS 225 (442)
T KOG3866|consen 204 ESKHEESLKRHNDHPK---V--NHPGS 225 (442)
T ss_pred HHHHHHHHHhhccCcc---C--CCCCc
Confidence 4455555555556653 2 45666
No 128
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=25.00 E-value=64 Score=39.17 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhhHH
Q 002862 520 GERKTAFNEYLGQKKKQDAE 539 (873)
Q Consensus 520 ~ERKqlFeeYl~~~~k~E~e 539 (873)
.+.+.+|..|++...-+++.
T Consensus 272 ~~~E~Ayq~rl~~we~Rer~ 291 (668)
T KOG2253|consen 272 VDPEKAYQTRLVFWEIREQT 291 (668)
T ss_pred cChhHHHHHHHHHHHHHHHH
Confidence 45667777777665544443
No 129
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=23.77 E-value=2.3e+02 Score=24.52 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCcccCCCCCHHHHHHHhhh--cCCCCCCChhhHHHHHHHHHHH
Q 002862 758 TRIKDAVKLRKITLSSTWTFEDFKASVLE--DATSPPISDVNLKLIFDDLLIK 808 (873)
Q Consensus 758 ~~i~d~Lk~~~i~~~s~wt~ee~~~~l~e--d~r~~~l~~~nlk~iFe~li~r 808 (873)
..+.++++..+++++. +++.++++. ++.|...++..+....+.|+-.
T Consensus 17 ~~m~~if~l~~~~vs~----~el~a~lrke~~~~y~~c~D~~L~~FL~GLi~~ 65 (68)
T PF07308_consen 17 DDMIEIFALAGFEVSK----AELSAWLRKEDEKGYKECSDQLLRNFLNGLIIH 65 (68)
T ss_pred HHHHHHHHHcCCccCH----HHHHHHHCCCCCccccccChHHHHHHHHHHHHH
Confidence 4577788888887754 689999874 4679999999888888887753
No 130
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=23.74 E-value=8e+02 Score=29.19 Aligned_cols=79 Identities=16% Similarity=0.333 Sum_probs=48.6
Q ss_pred hHHHHHHHhcCchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhcCcccCCCCCHHHHHHHh
Q 002862 713 WRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKD--------AVKLRKITLSSTWTFEDFKASV 784 (873)
Q Consensus 713 W~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~veeL~k~~~e~k~~i~d--------~Lk~~~i~~~s~wt~ee~~~~l 784 (873)
|.++-..-|| |. + ..+....-|...|..|+++...+|..|.+ +|.++.= --++.|...|
T Consensus 273 W~~ae~qaKn-PK--A-----ekqalnqhFQ~~v~sLEee~a~erqqlvetH~~RV~AmlNdrrR-----~Ale~ylaAL 339 (615)
T KOG3540|consen 273 WEEAETQAKN-PK--A-----EKQALNQHFQKTVSSLEEEAARERQQLVETHEARVEAMLNDRRR-----DALENYLAAL 339 (615)
T ss_pred HHHHHhcccC-ch--h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHH
Confidence 8888777776 53 1 12344566999999999888877775533 3333221 1247888888
Q ss_pred hhcCCCCCCChhhHHHHHHHHHHHHHH
Q 002862 785 LEDATSPPISDVNLKLIFDDLLIKVKE 811 (873)
Q Consensus 785 ~ed~r~~~l~~~nlk~iFe~li~r~kE 811 (873)
..|+-- -..+|..|.+.++.
T Consensus 340 qa~ppr-------p~~Vl~aLkrYvRA 359 (615)
T KOG3540|consen 340 QADPPR-------PHRVLQALKRYVRA 359 (615)
T ss_pred hcCCCC-------hHHHHHHHHHHHHH
Confidence 877531 14566666655543
No 131
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=23.67 E-value=1.1e+02 Score=34.92 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCCh
Q 002862 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 300 (873)
Q Consensus 231 ~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 300 (873)
.+..-..+.+|.+|-+|..||+..|.....-.. ........+-.-+.+.+|..|-+|..||+..|..+.
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA-LSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCce-ecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 344445566899999999999999988653210 000011123233345689999999999999999864
No 132
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.37 E-value=78 Score=34.29 Aligned_cols=30 Identities=23% Similarity=0.111 Sum_probs=13.1
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC
Q 002862 38 QYRPLVP-APQPQHYVPMASQHFQPGGQGGL 67 (873)
Q Consensus 38 q~~p~~~-~~~~~~~~~~~~~~f~~~~~~~p 67 (873)
|+-|..+ .++++|..+..-++..+..+++|
T Consensus 9 ~~sp~~~~~~~~~~qlq~~qq~~~~~~~~~~ 39 (258)
T KOG1142|consen 9 QPSPAEQAGQQGQQQLQARQQQWLRQIQGIP 39 (258)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhccccCCC
Confidence 3444443 34444444444444444444444
No 133
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=23.35 E-value=6.8e+02 Score=26.10 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHH
Q 002862 520 GERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLD 599 (873)
Q Consensus 520 ~ERKqlFeeYl~~~~k~E~eekr~~~kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~ 599 (873)
.||++-.=+-+....++.+..-|.-++.+.+.++++.++. .|+ .|...+ . +.+...++.+||.
T Consensus 109 eErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~~-~is-------------EDe~k~-~--e~~iQKlTd~yi~ 171 (187)
T COG0233 109 EERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDK-EIS-------------EDEVKK-A--EEEIQKLTDEYIK 171 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-Ccc-------------hHHHHH-H--HHHHHHHHHHHHH
Confidence 5777665555555555666666677777888787777652 333 222222 2 3578999999999
Q ss_pred HHHHHHHH
Q 002862 600 ELKQKERA 607 (873)
Q Consensus 600 ~L~kkeke 607 (873)
.+.+--+.
T Consensus 172 ~iD~~~~~ 179 (187)
T COG0233 172 KIDELLKD 179 (187)
T ss_pred HHHHHHHH
Confidence 98765443
No 134
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=23.34 E-value=9.5e+02 Score=25.83 Aligned_cols=51 Identities=14% Similarity=0.306 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCccC----CCCChHHHHHH
Q 002862 668 LEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLT----AKTNWRDYCIK 719 (873)
Q Consensus 668 Leke~ee~kr~~k~~~rR~eRk~Rd~F~~LL~E~~k~g~I~----~~t~W~e~~~~ 719 (873)
.++++++..+..+.+..|-++.+.++|+..|...+. +.|. .-..|..|+|.
T Consensus 178 a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fle-s~ie~qke~ie~We~f~p~ 232 (234)
T cd07664 178 GERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLE-SLVQTQQQLIKYWEAFLPE 232 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhc
Confidence 344555555555666667777788888888887654 2221 11247777764
No 135
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=22.60 E-value=9.4e+02 Score=25.50 Aligned_cols=15 Identities=7% Similarity=0.441 Sum_probs=8.6
Q ss_pred cCccCCCCChHHHHH
Q 002862 704 LGTLTAKTNWRDYCI 718 (873)
Q Consensus 704 ~g~I~~~t~W~e~~~ 718 (873)
+.+|...|+|..+.-
T Consensus 144 SDKIRr~STwgT~~l 158 (207)
T PF05546_consen 144 SDKIRRASTWGTWGL 158 (207)
T ss_pred HHHHHhHHHHHHHHH
Confidence 345666677765543
No 136
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=21.99 E-value=1e+02 Score=31.86 Aligned_cols=62 Identities=26% Similarity=0.321 Sum_probs=41.5
Q ss_pred EEEEcC-CCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeecc
Q 002862 234 KEHTSA-DGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWS 297 (873)
Q Consensus 234 ~~~~~~-~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We 297 (873)
..+... +|+++=+|..|++..|+.+... .........+-.-+.+.+|+.|-++..||+..|.
T Consensus 175 ~v~~~~~~g~~~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 175 RVYVSSGDGRVVAVDLATGEKLWSKPISG--IYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEECCTSSEEEEETTTTEEEEEECSS---ECECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCCEEEEecCCC--ccCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 555554 6777777899999889777222 1111123344444455689999999999999995
No 137
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=21.97 E-value=2.8e+02 Score=30.99 Aligned_cols=19 Identities=32% Similarity=0.308 Sum_probs=11.3
Q ss_pred HHHHH-HHHHHHHHHHHHHH
Q 002862 589 DRKDM-FDDHLDELKQKERA 607 (873)
Q Consensus 589 eRe~l-F~eyi~~L~kkeke 607 (873)
|.+.. =.|||+.|-.+|..
T Consensus 336 DIE~ALRDDYVRRLl~kEaq 355 (407)
T PF04625_consen 336 DIERALRDDYVRRLLHKEAQ 355 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44443 34688888776543
No 138
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.88 E-value=9.5e+02 Score=25.32 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=57.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCCCCHHHHHHHhhhcCC-C----C----CCCh-hhH-HHH
Q 002862 734 SGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRK-ITLSSTWTFEDFKASVLEDAT-S----P----PISD-VNL-KLI 801 (873)
Q Consensus 734 ~gS~~ldLF~d~veeL~k~~~e~k~~i~d~Lk~~~-i~~~s~wt~ee~~~~l~ed~r-~----~----~l~~-~nl-k~i 801 (873)
-|-...||.-|.|++...-..+.+..|..+|.... +.--..-+++.....+.+.-. + . .|+. ++. +.+
T Consensus 18 vG~hKRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~AL 97 (201)
T PF11172_consen 18 VGVHKRDILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADAL 97 (201)
T ss_pred hCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999887666666666766664321 111112223333332222110 0 0 1111 222 567
Q ss_pred HHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHhhhch
Q 002862 802 FDDLLIKVKE----KEE-KEAKKRKRLEDEFFDLLCSVKV 836 (873)
Q Consensus 802 Fe~li~r~kE----Ke~-ee~rk~~r~~~~F~~lL~~~k~ 836 (873)
|++|-..+.+ ..+ .-++|.+.....|..||+.++.
T Consensus 98 F~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~ 137 (201)
T PF11172_consen 98 FDEWEQELDQYSNASLRRASEQKLAETRRRYAQLIKAMRR 137 (201)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776653 222 3356777778889999998875
No 139
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=21.70 E-value=91 Score=37.02 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=41.3
Q ss_pred CCCCceeecCCCcccccCCCCcch-------hhh--hhccCCCCcEEEeCCCCCeEEEeCCCCeeeccC
Q 002862 239 ADGRRYYFNKRTRVSTWDKPFELM-------TTI--ERADASTDWKEFTSPDGRKYYYNKVTKQSKWSL 298 (873)
Q Consensus 239 ~~Gr~YYyN~~T~~stWe~P~~~~-------~~~--e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~ 298 (873)
.+|++|-+|..|++..|+.+.... .+. .......+-.=+.+.+|+.|-++..||+..|..
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 468999999999999999876510 000 000112233333467899999999999999985
No 140
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=21.26 E-value=2.2e+02 Score=25.89 Aligned_cols=15 Identities=27% Similarity=0.707 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhhc
Q 002862 613 RKRNIIEYRKFLESC 627 (873)
Q Consensus 613 rk~~~~ef~~lL~~~ 627 (873)
.|+++..|+.+|+.+
T Consensus 4 ~k~nL~af~~yi~kt 18 (89)
T cd08816 4 EKRNLQRFRDYIKKI 18 (89)
T ss_pred HHHHHHHHHHHHHHh
Confidence 467889999999864
No 141
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=21.21 E-value=1.2e+03 Score=26.29 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHhhcCccCCCCChHHHHH
Q 002862 656 DRLEIFQEYLNDLEKEEEEQRKIQKEE-----------LSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCI 718 (873)
Q Consensus 656 drl~lFed~i~~Leke~ee~kr~~k~~-----------~rR~eRk~Rd~F~~LL~E~~k~g~I~~~t~W~e~~~ 718 (873)
....++.+..+.|..|+.+..+...+- .-..-|..-..|+..|..-.. +.-....+|.+...
T Consensus 90 ~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~rWtr~pS~~~~~~l~~~i~~~r~~L~~A~~-sD~~v~~k~~~~~~ 162 (339)
T cd09238 90 VCTELLAAAQESLEAEATEDSAARTQYGTAWTRPPSATLTKNLWERLNRFRVNLEQAGD-SDESLRRRIEDAMD 162 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 456677777777766655543322110 001223334567777776543 22222345555444
No 142
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=21.16 E-value=1.1e+02 Score=34.43 Aligned_cols=68 Identities=10% Similarity=0.150 Sum_probs=46.4
Q ss_pred CCcEEEEcCCCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCC
Q 002862 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLP 299 (873)
Q Consensus 231 ~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P 299 (873)
.+..-.-+.+|++|-+|..||+..|........ ........+..-+.+.+|..|-+|..||+..|+..
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEV-LSPPLVANGLVVVRTNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCcee-ecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence 344444567899999999999999987643210 00001123444445578999999999999999964
No 143
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=21.05 E-value=1e+03 Score=28.25 Aligned_cols=159 Identities=20% Similarity=0.167 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------------------HHHHHHHHhhcCccCCCCChHHHH
Q 002862 656 DRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDE------------------FRKLMEADVALGTLTAKTNWRDYC 717 (873)
Q Consensus 656 drl~lFed~i~~Leke~ee~kr~~k~~~rR~eRk~Rd~------------------F~~LL~E~~k~g~I~~~t~W~e~~ 717 (873)
+..+||.--+..|.||+.|.......-.|-+.---|+- =+-||-.+.-.| -|.|+|
T Consensus 407 EqeEIfKLRlgHLkKEEaeiqaElERLErvrnlHiRELKRi~NEdnSQFkDHptLn~RYLlLhLLGrG------GFSEVy 480 (775)
T KOG1151|consen 407 EQEEIFKLRLGHLKKEEAEIQAELERLERVRNLHIRELKRIHNEDNSQFKDHPTLNDRYLLLHLLGRG------GFSEVY 480 (775)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhccCcchHHHHHHHHHhccc------cHHHHH
Q ss_pred HHH-hcCchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------cccCCCCCHHHHHHHhhh
Q 002862 718 IKV-KDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRK----------ITLSSTWTFEDFKASVLE 786 (873)
Q Consensus 718 ~~i-kdD~rf~~l~~~~~gS~~ldLF~d~veeL~k~~~e~k~~i~d~Lk~~~----------i~~~s~wt~ee~~~~l~e 786 (873)
..+ ..+.||.++ -...|=+++.++.+..|+.+--+-.++.|+.+ |++++. +|=.+...+..
T Consensus 481 KAFDl~EqRYvAv-------KIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtd-sFCTVLEYceG 552 (775)
T KOG1151|consen 481 KAFDLTEQRYVAV-------KIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTD-SFCTVLEYCEG 552 (775)
T ss_pred HhcccchhheeeE-------eeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccc-cceeeeeecCC
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhccC
Q 002862 787 DATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKVRYLQLLHG 844 (873)
Q Consensus 787 d~r~~~l~~~nlk~iFe~li~r~kEKe~ee~rk~~r~~~~F~~lL~~~k~It~~~~~~ 844 (873)
++ .|-|++.-|---++|+|-..-..-.-...|.+++...+ |.
T Consensus 553 ND-------------LDFYLKQhklmSEKEARSIiMQiVnAL~YLNEikpPII---HY 594 (775)
T KOG1151|consen 553 ND-------------LDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKPPII---HY 594 (775)
T ss_pred Cc-------------hhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCee---ee
No 144
>COG5293 Predicted ATPase [General function prediction only]
Probab=20.97 E-value=1.4e+03 Score=27.06 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhccccC
Q 002862 588 RDRKDMFDDHLDELKQKERAKAQEER--KRNIIEYRKFLESCDFIK 631 (873)
Q Consensus 588 ~eRe~lF~eyi~~L~kkeke~~~~~r--k~~~~ef~~lL~~~~~It 631 (873)
.+|.+.|.+-|.+++..-++...+.+ -+.+++..++|++.+.++
T Consensus 334 e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e 379 (591)
T COG5293 334 EERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFE 379 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 36777777777777665544332222 234566677777766554
No 145
>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]
Probab=20.96 E-value=24 Score=44.20 Aligned_cols=54 Identities=22% Similarity=0.508 Sum_probs=40.5
Q ss_pred CcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHHHHH
Q 002862 250 TRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLA 305 (873)
Q Consensus 250 T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~ 305 (873)
|..+.|=.+.+.-.. ....+.+|.+.+|..||.||+|..++.++.+.|..+++.
T Consensus 2 ~~~a~~~p~~~~~~~--~~~v~~~~~r~~dsk~r~~y~~~~~~~~~~~~~~~i~~~ 55 (1298)
T KOG3552|consen 2 TQSAGWLPACEDWSK--HEELSYGWERAIDSKGRSYYINHLNKTTTYEAPECIRWE 55 (1298)
T ss_pred cccccCCCCcccccc--ccccchHHHHhhhcccchhHHhhcCCccCcCCCccccCc
Confidence 445666555543221 124678899999999999999999999999999888763
No 146
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=20.85 E-value=7.5e+02 Score=33.44 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHhhhHHH
Q 002862 480 EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEE 540 (873)
Q Consensus 480 eAk~aFk~LL~e~~V~s~~tWe~~~~~i~~DpRy~al~~~~ERKqlFeeYl~~~~k~E~ee 540 (873)
|..++|..|++..- ++..-|=+-|.-.+. +.+...-+.+|++.|...-=+|.+|
T Consensus 1442 esaeDferlvrssP-NSSi~WI~YMaf~Le------lsEiekAR~iaerAL~tIN~REeeE 1495 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSP-NSSILWIRYMAFHLE------LSEIEKARKIAERALKTINFREEEE 1495 (1710)
T ss_pred cCHHHHHHHHhcCC-CcchHHHHHHHHHhh------hhhhHHHHHHHHHHhhhCCcchhHH
Confidence 45677888887653 556677766654321 3344556667777777763333333
No 147
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=20.75 E-value=7.5e+02 Score=25.39 Aligned_cols=72 Identities=18% Similarity=0.269 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHH
Q 002862 520 GERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLD 599 (873)
Q Consensus 520 ~ERKqlFeeYl~~~~k~E~eekr~~~kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~ 599 (873)
.||+.-+-+-+....++-+..-|..++.+.+.++++.++ +.+. .|..++. +.+.+.+..+|+.
T Consensus 98 ~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~-~~is-------------eD~~k~~---~~~iQkltd~~i~ 160 (176)
T TIGR00496 98 EERRKELVKHAKKIAEQAKVAVRNVRRDANDKVKKLEKD-KEIS-------------EDEERRL---QEEIQKLTDEYIK 160 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC-------------hhHHHHH---HHHHHHHHHHHHH
Confidence 577777666666666555555555666666666666543 1222 3333333 2578999999999
Q ss_pred HHHHHHHHH
Q 002862 600 ELKQKERAK 608 (873)
Q Consensus 600 ~L~kkeke~ 608 (873)
.+.+--+++
T Consensus 161 ~id~~~~~K 169 (176)
T TIGR00496 161 KIDEILKDK 169 (176)
T ss_pred HHHHHHHHH
Confidence 988765443
No 148
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=20.72 E-value=1e+03 Score=25.24 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=51.2
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCHHHHHHHhhhcCCCC---CC-ChhhHHHHHHHH
Q 002862 730 ASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSP---PI-SDVNLKLIFDDL 805 (873)
Q Consensus 730 ~~~~~gS~~ldLF~d~veeL~k~~~e~k~~i~d~Lk~~~i~~~s~wt~ee~~~~l~ed~r~~---~l-~~~nlk~iFe~l 805 (873)
++++++.+..++|+-+++.+..-++.- ..+...|++.+-.+..+ ..++.....+++. |+ .+ |-..|.-++..|
T Consensus 38 ~~~~s~q~~ee~F~~l~~sV~~m~~~i-~~~n~fl~~~~~~~~~~-~~~~~~~YyKkhI-y~~d~~v~d~~~lv~~ck~F 114 (205)
T PF12238_consen 38 LSNLSGQSDEEKFKSLFDSVPLMKHKI-SHMNAFLNDWPPHMLEE-GREKMTKYYKKHI-YKEDSEVKDYNGLVKFCKDF 114 (205)
T ss_pred HHhcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHccCchhhhhc-cHHHHHHHHHHhc-cCcccccccHHHHHHHHHHH
Confidence 446788899999999998875433221 12334454333333211 1234444443332 11 23 334455566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Q 002862 806 LIKVKEKEEKEAKKRKRLEDEFFDLLCSVKVRYL 839 (873)
Q Consensus 806 i~r~kEKe~ee~rk~~r~~~~F~~lL~~~k~It~ 839 (873)
+.. +-.-.|.-+..+.|-+|.+..-.+..
T Consensus 115 l~~-----~s~f~~l~~~~~~f~elVkk~p~~~s 143 (205)
T PF12238_consen 115 LDS-----ESPFMKLYKAFNTFEELVKKKPAQPS 143 (205)
T ss_pred hcc-----ccHHHHHHHHHHHHHHHhhhcccCCC
Confidence 653 11123334555667667666555544
No 149
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=20.60 E-value=3.6e+02 Score=30.17 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=34.3
Q ss_pred ChHHHHHHHhcCchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccCCCCCHHHHHHHhhhcC
Q 002862 712 NWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKL---RKITLSSTWTFEDFKASVLEDA 788 (873)
Q Consensus 712 ~W~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~veeL~k~~~e~k~~i~d~Lk~---~~i~~~s~wt~ee~~~~l~ed~ 788 (873)
-|.|+|..+|+.+.- ....+|-+++..++.-. ++..++..+.+- ++ .-.|-...+.+++..+.
T Consensus 101 gF~Diy~kvK~~ENa----------~Aia~fP~vv~~lDal~-dE~~Rle~LvrGilAGN---iFDwGa~~~~~il~~~~ 166 (348)
T KOG4584|consen 101 GFRDIYKKVKDEENA----------KAIALFPQVVRLLDALE-DEGTRLENLVRGILAGN---IFDWGAKAVVKILESAS 166 (348)
T ss_pred CCccHHHHHHHhhhh----------hHHHHhHHHHHHHhhhc-chhHHHHHHHHHHHhcc---hhhhHHHHHHHHHhccc
Confidence 355666666665432 34567888888876433 333333333211 11 12454456677776655
Q ss_pred CC
Q 002862 789 TS 790 (873)
Q Consensus 789 r~ 790 (873)
-|
T Consensus 167 ~f 168 (348)
T KOG4584|consen 167 VF 168 (348)
T ss_pred cc
Confidence 43
No 150
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=20.56 E-value=2.9e+02 Score=28.04 Aligned_cols=47 Identities=17% Similarity=0.367 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcHHHHHHHh
Q 002862 595 DDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRL 643 (873)
Q Consensus 595 ~eyi~~L~kkeke~~~~~rk~~~~ef~~lL~~~~~It~~t~W~ev~~~l 643 (873)
+||+++|++.-+.--+.+++..++.|+++.++-. ...-+..++...|
T Consensus 4 ~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~--~~G~sEeeii~~L 50 (181)
T PF08006_consen 4 NEFLNELEKYLKKLPEEEREEILEYYEEYFDDAG--EEGKSEEEIIAEL 50 (181)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh--hCCCCHHHHHHHc
Confidence 4677777776654445566777888888886532 2233455555444
No 151
>cd03488 Topoisomer_IB_N_htopoI_like Topoisomer_IB_N_htopoI_like : N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit religation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. This family may represent more than one structural domain.
Probab=20.35 E-value=1.9e+02 Score=30.53 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=22.2
Q ss_pred HHHHHHHhhhcC--CCCCCChhhHHHHHHHHHHHHH
Q 002862 777 FEDFKASVLEDA--TSPPISDVNLKLIFDDLLIKVK 810 (873)
Q Consensus 777 ~ee~~~~l~ed~--r~~~l~~~nlk~iFe~li~r~k 810 (873)
|.||+++|.... ..+.+++.|...||+.+.....
T Consensus 64 f~Df~~~l~~~~~~~I~~f~kcDF~~i~~~~~~~~e 99 (215)
T cd03488 64 FKDFKKVMTKEEKVIIKDFSKCDFTQMFAYFKAQKE 99 (215)
T ss_pred HHHHHHHhccccCccccchhhCCCHHHHHHHHHHHH
Confidence 366777774432 3456777888888888776543
No 152
>cd00660 Topoisomer_IB_N Topoisomer_IB_N: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I and heterodimeric topo I from Leishmania donvanni. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit re-ligation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. In addition to differences in structure and some biochemical properties, Trypanosomatid parasite topo I diffe
Probab=20.23 E-value=1.9e+02 Score=30.50 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=21.5
Q ss_pred HHHHHHHhhhcC--CCCCCChhhHHHHHHHHHHHH
Q 002862 777 FEDFKASVLEDA--TSPPISDVNLKLIFDDLLIKV 809 (873)
Q Consensus 777 ~ee~~~~l~ed~--r~~~l~~~nlk~iFe~li~r~ 809 (873)
|.||+++|.... ..+.+++.|...||+.+....
T Consensus 64 f~Df~~~l~~~~~~~i~~f~kcDF~~i~~~~~~~~ 98 (215)
T cd00660 64 FKDFRKILTKEEKHIIKKLSKCDFTPIYQYFEEEK 98 (215)
T ss_pred HHHHHHHhccccCccccchhhCCCHHHHHHHHHHH
Confidence 366777774432 235677788888888877653
Done!