Query 002862
Match_columns 873
No_of_seqs 390 out of 1218
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 04:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hfh_A Transcription elongatio 100.0 8.2E-39 2.8E-43 326.9 11.7 188 476-666 2-190 (190)
2 3hfh_A Transcription elongatio 99.9 2E-26 7E-31 235.2 11.1 184 547-747 6-190 (190)
3 2l5f_A PRE-mRNA-processing fac 99.8 1.9E-20 6.6E-25 168.6 7.0 79 227-305 10-88 (92)
4 2jxw_A WW domain-binding prote 99.8 2.9E-20 9.9E-25 161.2 6.3 73 229-301 3-75 (75)
5 1uzc_A Hypothetical protein FL 99.7 1.5E-18 5.1E-23 147.8 6.4 65 471-535 7-71 (71)
6 1o6w_A PRP40, PRE-mRNA process 99.7 1.2E-18 4.1E-23 151.1 4.7 71 231-301 2-72 (75)
7 2dod_A Transcription elongatio 99.7 3.6E-18 1.2E-22 149.3 6.2 69 473-542 11-79 (82)
8 2b7e_A PRE-mRNA processing pro 99.7 4.4E-18 1.5E-22 137.9 4.7 56 478-533 2-59 (59)
9 2kxq_A E3 ubiquitin-protein li 99.7 5.6E-17 1.9E-21 145.5 8.8 75 227-301 8-87 (90)
10 1tk7_A CG4244-PB; WW domain, n 99.6 1.3E-16 4.3E-21 142.6 7.0 72 229-300 13-87 (88)
11 2doe_A Transcription elongatio 99.3 1.3E-12 4.6E-17 114.9 6.9 63 476-538 14-76 (83)
12 2doe_A Transcription elongatio 99.3 7.3E-13 2.5E-17 116.6 1.2 71 534-605 5-75 (83)
13 2juc_A PRE-mRNA-splicing facto 99.3 1.6E-12 5.4E-17 105.4 2.8 53 479-531 6-58 (59)
14 2dk7_A Transcription elongatio 99.1 2.7E-11 9.3E-16 101.8 2.0 52 231-282 20-73 (73)
15 2cqn_A Formin-binding protein 99.1 2.8E-10 9.6E-15 98.5 7.6 61 544-604 7-68 (77)
16 1e0l_A Formin binding protein; 99.0 2E-10 7E-15 85.4 3.7 34 229-262 4-37 (37)
17 2ysi_A Transcription elongatio 98.9 6.4E-10 2.2E-14 84.1 4.3 33 229-261 8-40 (40)
18 2cqn_A Formin-binding protein 98.9 2.7E-09 9.4E-14 92.3 7.6 58 478-535 8-67 (77)
19 1uzc_A Hypothetical protein FL 98.8 6E-09 2E-13 88.7 7.6 55 546-601 15-69 (71)
20 1e0l_A Formin binding protein; 98.8 2.1E-09 7.3E-14 79.9 3.4 34 269-302 3-36 (37)
21 1ywi_A Formin-binding protein 98.8 2.1E-09 7E-14 81.8 2.1 31 230-260 11-41 (41)
22 2dk1_A WW domain-binding prote 98.7 3.3E-09 1.1E-13 83.9 3.1 39 230-268 6-44 (50)
23 2ysh_A GAS-7, growth-arrest-sp 98.7 7.3E-09 2.5E-13 78.4 4.7 32 229-260 8-39 (40)
24 1e0m_A Wwprototype; SH3 protot 98.7 6.4E-09 2.2E-13 77.3 3.7 31 230-260 5-35 (37)
25 2dod_A Transcription elongatio 98.7 8.4E-09 2.9E-13 90.1 4.8 61 546-608 17-77 (82)
26 1wr7_A NEDD4-2; all-beta, liga 98.7 8.2E-09 2.8E-13 78.6 4.0 34 227-260 7-40 (41)
27 2ysi_A Transcription elongatio 98.7 7.9E-09 2.7E-13 78.1 3.7 34 269-302 7-40 (40)
28 1wr3_A Ubiquitin-protein ligas 98.7 8.7E-09 3E-13 76.2 3.8 30 230-259 6-35 (36)
29 1ymz_A CC45; artificial protei 98.7 9.1E-09 3.1E-13 79.1 3.6 32 230-261 10-41 (43)
30 2kyk_A E3 ubiquitin-protein li 98.7 1.9E-08 6.4E-13 75.7 4.5 32 229-260 7-38 (39)
31 2dmv_A Itchy homolog E3 ubiqui 98.6 1.9E-08 6.6E-13 77.3 4.3 33 229-261 8-40 (43)
32 1wr4_A Ubiquitin-protein ligas 98.6 1.9E-08 6.5E-13 74.2 3.7 30 230-259 6-35 (36)
33 1ymz_A CC45; artificial protei 98.6 2E-08 6.7E-13 77.3 3.7 40 254-302 2-41 (43)
34 2ysg_A Syntaxin-binding protei 98.6 2.8E-08 9.5E-13 75.2 4.4 31 229-259 8-38 (40)
35 2law_A Yorkie homolog; YAP, SM 98.6 1.4E-08 4.9E-13 75.9 2.6 31 229-259 7-37 (38)
36 1ywi_A Formin-binding protein 98.6 2.1E-08 7.1E-13 76.3 3.4 33 269-301 9-41 (41)
37 2ez5_W Dnedd4, E3 ubiquitin-pr 98.6 3.3E-08 1.1E-12 77.0 4.3 34 228-261 10-43 (46)
38 2ysf_A E3 ubiquitin-protein li 98.6 3.8E-08 1.3E-12 74.5 4.2 32 229-260 8-39 (40)
39 2djy_A SMAD ubiquitination reg 98.6 3.5E-08 1.2E-12 75.4 4.0 33 228-260 7-39 (42)
40 2dwv_A Salvador homolog 1 prot 98.5 6.5E-08 2.2E-12 76.4 4.9 45 251-301 1-45 (49)
41 2l4j_A YES-associated protein 98.5 6.7E-08 2.3E-12 75.3 4.6 33 228-260 11-43 (46)
42 2kpz_A E3 ubiquitin-protein li 98.5 4.4E-08 1.5E-12 77.4 3.5 33 229-261 13-45 (49)
43 1e0m_A Wwprototype; SH3 protot 98.5 7.3E-08 2.5E-12 71.6 4.3 33 269-301 3-35 (37)
44 2juc_A PRE-mRNA-splicing facto 98.5 1E-07 3.6E-12 77.3 5.0 51 548-599 8-58 (59)
45 1i5h_W Rnedd4, ubiquitin ligas 98.5 7.7E-08 2.6E-12 76.3 4.0 33 229-261 12-44 (50)
46 2ysb_A Salvador homolog 1 prot 98.5 7.6E-08 2.6E-12 76.0 4.0 34 228-261 11-44 (49)
47 1e0n_A Hypothetical protein; Y 98.5 5.9E-08 2E-12 66.8 2.5 27 231-258 1-27 (27)
48 2b7e_A PRE-mRNA processing pro 98.5 2.1E-07 7.3E-12 75.5 5.9 54 546-600 3-58 (59)
49 2jv4_A Peptidyl-prolyl CIS/tra 98.4 9.4E-08 3.2E-12 77.0 3.6 34 229-262 8-42 (54)
50 2zaj_A Membrane-associated gua 98.4 9.7E-08 3.3E-12 75.3 3.2 34 228-261 13-46 (49)
51 2ysh_A GAS-7, growth-arrest-sp 98.4 1.6E-07 5.4E-12 71.0 4.3 33 269-301 7-39 (40)
52 1wr3_A Ubiquitin-protein ligas 98.4 1.6E-07 5.4E-12 69.3 4.1 32 269-300 4-35 (36)
53 2dk1_A WW domain-binding prote 98.4 8.1E-08 2.8E-12 75.9 2.6 34 270-303 5-38 (50)
54 2ysc_A Amyloid beta A4 precurs 98.4 1.6E-07 5.4E-12 70.4 3.4 31 228-259 8-38 (39)
55 1e0n_A Hypothetical protein; Y 98.4 2E-07 7E-12 64.1 3.6 27 272-299 1-27 (27)
56 1wr7_A NEDD4-2; all-beta, liga 98.4 2.5E-07 8.7E-12 70.3 4.4 34 268-301 7-40 (41)
57 2dk7_A Transcription elongatio 98.4 1.7E-07 5.7E-12 79.0 3.4 37 269-305 17-53 (73)
58 2jxw_A WW domain-binding prote 98.4 2.2E-07 7.5E-12 80.2 4.3 33 228-260 43-75 (75)
59 2jx8_A Hpcif1, phosphorylated 98.4 1.2E-07 4.1E-12 75.7 2.1 32 230-261 12-44 (52)
60 2law_A Yorkie homolog; YAP, SM 98.3 2.5E-07 8.4E-12 69.2 3.6 32 269-300 6-37 (38)
61 2jmf_A E3 ubiquitin-protein li 98.3 2.7E-07 9.4E-12 74.0 4.1 34 228-261 18-51 (53)
62 2kyk_A E3 ubiquitin-protein li 98.3 3.4E-07 1.2E-11 68.8 4.2 32 269-300 6-37 (39)
63 1wr4_A Ubiquitin-protein ligas 98.3 4.1E-07 1.4E-11 67.0 4.5 32 269-300 4-35 (36)
64 2dwv_A Salvador homolog 1 prot 98.3 2.5E-07 8.7E-12 73.0 3.5 34 228-261 13-46 (49)
65 2ho2_A Fe65 protein, amyloid b 98.3 3.2E-07 1.1E-11 68.4 3.5 30 230-260 5-34 (38)
66 3l4h_A E3 ubiquitin-protein li 98.3 4.8E-08 1.6E-12 89.2 -1.4 58 230-301 47-104 (109)
67 2yse_A Membrane-associated gua 98.3 2.3E-07 8E-12 76.1 2.7 34 228-261 13-46 (60)
68 2dmv_A Itchy homolog E3 ubiqui 98.3 5.1E-07 1.7E-11 69.3 4.3 33 269-301 7-39 (43)
69 2jv4_A Peptidyl-prolyl CIS/tra 98.3 5.2E-07 1.8E-11 72.6 4.1 34 269-302 7-41 (54)
70 2ysg_A Syntaxin-binding protei 98.3 5.9E-07 2E-11 67.9 4.2 32 269-300 7-38 (40)
71 2kpz_A E3 ubiquitin-protein li 98.3 6.5E-07 2.2E-11 70.7 4.6 34 268-301 11-44 (49)
72 2ysd_A Membrane-associated gua 98.3 7E-07 2.4E-11 72.6 4.8 34 228-261 14-47 (57)
73 2ysf_A E3 ubiquitin-protein li 98.2 8.3E-07 2.8E-11 67.1 4.3 33 269-301 7-39 (40)
74 2djy_A SMAD ubiquitination reg 98.2 8.1E-07 2.8E-11 67.8 4.2 34 268-301 6-39 (42)
75 2ez5_W Dnedd4, E3 ubiquitin-pr 98.2 1.1E-06 3.9E-11 68.4 4.5 33 269-301 10-42 (46)
76 1wmv_A WWOX, WW domain contain 98.2 9.2E-07 3.1E-11 71.2 4.2 33 229-261 12-44 (54)
77 2l4j_A YES-associated protein 98.2 1.4E-06 4.7E-11 67.9 4.6 34 268-301 10-43 (46)
78 1i5h_W Rnedd4, ubiquitin ligas 98.2 1.4E-06 4.9E-11 69.0 4.4 34 268-301 10-43 (50)
79 2ysb_A Salvador homolog 1 prot 98.1 1.8E-06 6E-11 68.2 4.4 33 269-301 11-43 (49)
80 2ho2_A Fe65 protein, amyloid b 98.1 2E-06 7E-11 64.0 4.3 32 269-301 3-34 (38)
81 2jx8_A Hpcif1, phosphorylated 98.1 1.3E-06 4.3E-11 69.8 2.8 33 269-301 10-43 (52)
82 2zaj_A Membrane-associated gua 98.1 2E-06 6.7E-11 67.8 3.7 34 268-301 12-45 (49)
83 2e45_A Fe65 protein, amyloid b 98.1 1.6E-06 5.4E-11 68.9 3.1 31 229-260 20-50 (55)
84 1o6w_A PRP40, PRE-mRNA process 98.1 1.5E-06 5.3E-11 74.8 3.2 32 230-261 42-73 (75)
85 2l5f_A PRE-mRNA-processing fac 98.1 2.6E-06 8.8E-11 76.4 4.6 37 269-305 11-47 (92)
86 2dof_A Transcription elongatio 98.0 4.1E-06 1.4E-10 72.5 5.2 61 689-754 18-78 (85)
87 2jmf_A E3 ubiquitin-protein li 98.0 3.5E-06 1.2E-10 67.5 4.3 34 268-301 17-50 (53)
88 2dof_A Transcription elongatio 98.0 5.6E-06 1.9E-10 71.7 5.3 66 539-605 10-77 (85)
89 2ysc_A Amyloid beta A4 precurs 98.0 3.7E-06 1.3E-10 63.0 3.5 32 268-300 7-38 (39)
90 1jmq_A YAP65, 65 kDa YES-assoc 98.0 1.7E-06 6E-11 67.3 1.8 34 228-261 8-41 (46)
91 2yse_A Membrane-associated gua 98.0 4.4E-06 1.5E-10 68.5 4.0 34 269-302 13-46 (60)
92 1tk7_A CG4244-PB; WW domain, n 98.0 2.9E-06 1E-10 75.4 3.1 30 230-259 58-87 (88)
93 2ysd_A Membrane-associated gua 98.0 5.7E-06 1.9E-10 67.3 4.4 34 268-301 13-46 (57)
94 2kxq_A E3 ubiquitin-protein li 97.9 4.1E-06 1.4E-10 74.8 3.2 34 228-261 55-88 (90)
95 1wmv_A WWOX, WW domain contain 97.9 1E-05 3.6E-10 65.0 4.3 33 269-301 11-43 (54)
96 2e45_A Fe65 protein, amyloid b 97.8 1E-05 3.5E-10 64.2 3.6 32 268-300 18-49 (55)
97 1jmq_A YAP65, 65 kDa YES-assoc 97.8 1.1E-05 3.6E-10 62.8 3.3 33 269-301 8-40 (46)
98 3l4h_A E3 ubiquitin-protein li 97.5 5.7E-05 1.9E-09 69.0 3.6 34 228-261 72-105 (109)
99 3tc5_A Peptidyl-prolyl CIS-tra 97.4 5.6E-05 1.9E-09 75.0 3.4 33 229-261 10-43 (166)
100 3tc5_A Peptidyl-prolyl CIS-tra 96.9 0.0005 1.7E-08 68.2 4.3 34 269-302 9-43 (166)
101 1eg3_A Dystrophin; EF-hand lik 96.6 0.00071 2.4E-08 71.7 2.5 32 230-261 13-44 (261)
102 1eg3_A Dystrophin; EF-hand lik 95.9 0.0061 2.1E-07 64.5 5.1 38 268-305 10-47 (261)
103 3olm_A E3 ubiquitin-protein li 95.8 0.0028 9.4E-08 72.0 1.9 33 229-261 9-41 (429)
104 2kfd_A PRE-mRNA-processing pro 95.1 0.057 2E-06 44.4 6.9 52 479-530 11-67 (69)
105 3olm_A E3 ubiquitin-protein li 93.7 0.023 7.8E-07 64.5 2.5 33 269-301 8-40 (429)
106 1yw5_A Peptidyl prolyl CIS/tra 93.6 0.047 1.6E-06 54.3 4.1 33 229-261 8-41 (177)
107 2k85_A Glucocorticoid receptor 93.4 0.2 6.7E-06 41.7 6.7 57 546-603 9-68 (69)
108 1yw5_A Peptidyl prolyl CIS/tra 92.3 0.098 3.4E-06 52.0 4.3 33 269-301 7-40 (177)
109 2kfd_A PRE-mRNA-processing pro 91.9 0.21 7.2E-06 41.1 5.0 57 688-746 11-67 (69)
110 2k85_A Glucocorticoid receptor 86.7 1.2 4E-05 37.1 5.7 56 480-535 10-68 (69)
111 3le4_A Microprocessor complex 85.1 1 3.5E-05 37.8 4.6 34 269-302 28-61 (79)
112 3le4_A Microprocessor complex 64.3 5.2 0.00018 33.6 3.4 34 229-262 29-62 (79)
113 3caz_A BAR protein; thermo-aci 63.3 13 0.00044 36.7 6.6 18 797-814 126-143 (294)
114 4akv_A Sorting nexin-33; trans 50.3 2.9E+02 0.0098 30.3 16.1 44 588-642 116-159 (386)
115 3qf7_D MRE11; ABC-ATPase, ATPa 38.3 30 0.001 25.9 3.4 17 652-668 4-20 (50)
116 3dyt_A Sorting nexin-9; 3-heli 35.7 4.4E+02 0.015 28.4 14.2 51 801-858 311-363 (366)
117 1f5n_A Interferon-induced guan 35.3 5.9E+02 0.02 29.6 22.0 20 656-675 519-538 (592)
118 3ecq_A Protein SPR0328, endo-a 33.8 13 0.00046 46.7 1.6 23 281-303 944-966 (1531)
119 1zxh_A Immunoglobulin G bindin 32.0 7.2 0.00025 30.8 -0.7 26 478-503 23-48 (56)
120 1deq_A Fibrinogen (alpha chain 30.7 3.3E+02 0.011 29.8 11.6 25 588-612 105-129 (390)
121 3q7m_A Lipoprotein YFGL, BAMB; 30.6 31 0.0011 36.6 3.8 59 240-298 286-344 (376)
122 2zxq_A Endo-alpha-N-acetylgala 27.7 15 0.0005 46.7 0.5 24 280-303 705-728 (1376)
123 3esl_A Checkpoint serine/threo 25.1 2.8E+02 0.0094 27.8 9.2 105 654-790 26-131 (202)
124 3hia_A Choline binding protein 23.9 52 0.0018 28.7 3.3 20 227-249 12-31 (94)
125 3q7m_A Lipoprotein YFGL, BAMB; 21.9 50 0.0017 34.9 3.4 59 238-299 246-304 (376)
126 2be1_A Serine/threonine-protei 21.6 65 0.0022 34.9 4.2 69 230-298 4-83 (339)
127 3caz_A BAR protein; thermo-aci 21.3 5.9E+02 0.02 25.0 10.3 36 682-721 150-188 (294)
128 4gfq_A Ribosome-recycling fact 20.6 5.4E+02 0.019 25.8 10.4 71 520-607 131-201 (209)
129 3ol1_A Vimentin; structural ge 20.4 3.2E+02 0.011 24.8 8.0 19 736-754 12-30 (119)
No 1
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=100.00 E-value=8.2e-39 Score=326.86 Aligned_cols=188 Identities=22% Similarity=0.434 Sum_probs=160.0
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH
Q 002862 476 ANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKM 555 (873)
Q Consensus 476 ~skeeAk~aFk~LL~e~~V~s~~tWe~~~~~i~~DpRy~al~~~~ERKqlFeeYl~~~~k~E~eekr~~~kkare~F~~l 555 (873)
.|++||+++|++||++++|+++|+|++++++|++||||++| +.++||++|++||.++.++++++++.+.++++++|.+|
T Consensus 2 ~s~ee~~~~F~~lL~~~~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~l 80 (190)
T 3hfh_A 2 PLGSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXM 80 (190)
T ss_dssp CCSCHHHHHHHHHHHHTTCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHcCcCCCCchhhhhhhhccCcchhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999 78999999999999999999999999999999999999
Q ss_pred HHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCc
Q 002862 556 LEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQ 635 (873)
Q Consensus 556 Lee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~~L~kkeke~~~~~rk~~~~ef~~lL~~~~~It~~t~ 635 (873)
|+++ +|+++++|.+|.++|.+||||++|.+++||+.||++||.+|+++++++++..+++++.+|.+||.+. .|++.|+
T Consensus 81 L~e~-~i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~~~r~~~~~~f~~lL~~~-~l~~~t~ 158 (190)
T 3hfh_A 81 MEEA-XFNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQSR 158 (190)
T ss_dssp ---------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHHHTHHHHHHHHHHHHHTS-CCCTTCC
T ss_pred HHHc-CCCCCCCHHHHHHHhCCCchhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCCCC
Confidence 9986 6999999999999999999999999889999999999999999999888888999999999999998 6999999
Q ss_pred HHHHHHHhhhhhhhhcCChh-hHHHHHHHHHH
Q 002862 636 WRKVQDRLEADERCSRLDKM-DRLEIFQEYLN 666 (873)
Q Consensus 636 W~ev~~~l~~D~r~~~l~~~-drl~lFed~i~ 666 (873)
|.+|+..|.+|++|.+|+.. +|++||++||+
T Consensus 159 W~~~~~~l~~D~ry~~v~~~~~R~~~F~eyi~ 190 (190)
T 3hfh_A 159 WSXVXDXVESDPRYXAVDSSSMREDLFXQYIE 190 (190)
T ss_dssp HHHHHHHHSSSHHHHTSCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhChHhhcCCCHHHHHHHHHHHhC
Confidence 99999999999999999985 99999999983
No 2
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=99.93 E-value=2e-26 Score=235.16 Aligned_cols=184 Identities=20% Similarity=0.376 Sum_probs=142.0
Q ss_pred HhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002862 547 KARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLES 626 (873)
Q Consensus 547 kare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~~L~kkeke~~~~~rk~~~~ef~~lL~~ 626 (873)
.+..+|++||.++ +|+++++|.++.+.|.+||||.+| +..+|+++|++|+..+.++++++++.+.+.++++|.+||.+
T Consensus 6 e~~~~F~~lL~~~-~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL~e 83 (190)
T 3hfh_A 6 ARMXQFXDMLLER-GVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMMEE 83 (190)
T ss_dssp HHHHHHHHHHHHT-TCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHc-CcCCCCchhhhhhhhccCcchhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999996 799999999999999999999999 68999999999999998888877777778899999999998
Q ss_pred ccccCCCCcHHHHHHHhhhhhhhhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcC
Q 002862 627 CDFIKANTQWRKVQDRLEADERCSRLDK-MDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALG 705 (873)
Q Consensus 627 ~~~It~~t~W~ev~~~l~~D~r~~~l~~-~drl~lFed~i~~Leke~ee~kr~~k~~~rR~eRk~Rd~F~~LL~E~~k~g 705 (873)
.. |++.++|.++...|.+|+||.++.. .+|..||++||..|.+.+.+.++ ...++++++|.+||.++
T Consensus 84 ~~-i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~-------~~r~~~~~~f~~lL~~~---- 151 (190)
T 3hfh_A 84 AX-FNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSX-------TRGEXIXSDFFELLSNH---- 151 (190)
T ss_dssp ------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHH-------HTHHHHHHHHHHHHHTS----
T ss_pred cC-CCCCCCHHHHHHHhCCCchhhcCccchHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHhC----
Confidence 64 9999999999999999999999987 79999999999999766544322 12346889999999996
Q ss_pred ccCCCCChHHHHHHHhcCchhhhhhcCCCCCChHHHHHHHHH
Q 002862 706 TLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVE 747 (873)
Q Consensus 706 ~I~~~t~W~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~ve 747 (873)
.|+..|+|.+++..|.+|+||.++. +.+..++||++||+
T Consensus 152 ~l~~~t~W~~~~~~l~~D~ry~~v~---~~~~R~~~F~eyi~ 190 (190)
T 3hfh_A 152 HLDSQSRWSXVXDXVESDPRYXAVD---SSSMREDLFXQYIE 190 (190)
T ss_dssp CCCTTCCHHHHHHHHSSSHHHHTSC---CHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHhhChHhhcCC---CHHHHHHHHHHHhC
Confidence 6999999999999999999999862 22379999999984
No 3
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-20 Score=168.60 Aligned_cols=79 Identities=46% Similarity=0.900 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEcCCCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHHHHH
Q 002862 227 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLA 305 (873)
Q Consensus 227 ~~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~ 305 (873)
.....+|++++|++||+||||+.|++|+|++|.++..+.++..+.++|+++.+.+||+||||..|++|+|++|++++.+
T Consensus 10 ~~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~~~~ 88 (92)
T 2l5f_A 10 SGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKELEDL 88 (92)
T ss_dssp TBTTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHHHHHHHSCSEEEEECTTCCEEEEETTTTEEESCCCHHHHTS
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCceecccCccccccccccccccceEEEECCCCCEEEEECCCCCeeccCchhHhhh
Confidence 3456789999999999999999999999999999988777777889999999999999999999999999999998754
No 4
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-20 Score=161.23 Aligned_cols=73 Identities=33% Similarity=0.708 Sum_probs=68.0
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
..++|+++++++||+||||+.|++|+|++|.+++.+.++..+..+|++++|++||+||||..|++|+|++|++
T Consensus 3 ~~~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~e 75 (75)
T 2jxw_A 3 SKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75 (75)
T ss_dssp CCCCEEEEEETTTEEEEEETTTTEEECSCCSSCSSCCSSSSCCCSEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCCCcEEEECCCCCEEEEECCCCCEeecCCCcccccccccCCCccEEEEECCCCCEEEEECcCCCEeccCcCC
Confidence 3578999999999999999999999999999998877777889999999999999999999999999999964
No 5
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=99.74 E-value=1.5e-18 Score=147.78 Aligned_cols=65 Identities=48% Similarity=0.744 Sum_probs=61.8
Q ss_pred hhhhhcCHHHHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHh
Q 002862 471 EHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKK 535 (873)
Q Consensus 471 e~~~~~skeeAk~aFk~LL~e~~V~s~~tWe~~~~~i~~DpRy~al~~~~ERKqlFeeYl~~~~k 535 (873)
+++.|++++||+++|++||++++|+++|+|++++++|++||||++|++.++||++|++||.++.|
T Consensus 7 ~~~~~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~r~k 71 (71)
T 1uzc_A 7 KTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEK 71 (71)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHHHHhcC
Confidence 45679999999999999999999999999999999999999999999999999999999998763
No 6
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=99.73 E-value=1.2e-18 Score=151.15 Aligned_cols=71 Identities=41% Similarity=0.830 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 231 ~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
++|++++|++||+||||+.|++|+|++|.++..+.+...++.+|+++.|.+|++||||..|++|+|++|..
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~~~~~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHHHHHHHHHTCEEEECTTCCEEEEETTTTEEESSCCCC
T ss_pred CCCeEEECCCCCeEEEECCCCCEEeecchhhcccccccCCCCeEEEEECCCCCEEEEECCCCCEECCCCCC
Confidence 57999999999999999999999999999988776666788999999999999999999999999999964
No 7
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.72 E-value=3.6e-18 Score=149.32 Aligned_cols=69 Identities=26% Similarity=0.388 Sum_probs=64.8
Q ss_pred hhhcCHHHHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHhhhHHHHH
Q 002862 473 FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERR 542 (873)
Q Consensus 473 ~~~~skeeAk~aFk~LL~e~~V~s~~tWe~~~~~i~~DpRy~al~~~~ERKqlFeeYl~~~~k~E~eekr 542 (873)
..+.+++||+++|++||++++|+++|+|+++|++|++||||++|+ +.+||++|++||.++.++|+++++
T Consensus 11 ~~~~t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~aL~-~~eRK~~F~~y~~~r~~eereekr 79 (82)
T 2dod_A 11 RAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLN-PKERKQVFDQYVKTRAEEERRSGP 79 (82)
T ss_dssp SSSCCHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSC-HHHHHHHHHHHHHHHHHGGGSSCS
T ss_pred cccCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCccccCC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999999999999999999999997 899999999999999999887764
No 8
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=99.71 E-value=4.4e-18 Score=137.93 Aligned_cols=56 Identities=25% Similarity=0.523 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcHHHHHHHh-hcCccccccCC-hHHHHHHHHHHHHHH
Q 002862 478 KLEAKNAFKALLESANVGSDWTWDQALRAI-INDRRYGALRT-LGERKTAFNEYLGQK 533 (873)
Q Consensus 478 keeAk~aFk~LL~e~~V~s~~tWe~~~~~i-~~DpRy~al~~-~~ERKqlFeeYl~~~ 533 (873)
++||+++|++||++++|+++|||+++|+.| ++||||++|+| +.+||++|++|+.+|
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~~r 59 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSNR 59 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999 89999999996 999999999999864
No 9
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=99.68 E-value=5.6e-17 Score=145.46 Aligned_cols=75 Identities=20% Similarity=0.461 Sum_probs=65.7
Q ss_pred CCCCCCcEEEEcCCCCceeecCCCcccccCCCCcchh-----hhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 227 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMT-----TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 227 ~~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~-----~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
.....+|++++|.+||+||||+.|++|+|++|..... +.+...++.+|+++.|.+|++||||..|++|+|++|..
T Consensus 8 ~~LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 8 PDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp CSCCSSCEEEEETTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEECCCCCEEEEECCCCcEecCCCCc
Confidence 3446789999999999999999999999999987632 33345789999999999999999999999999999964
No 10
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=99.65 E-value=1.3e-16 Score=142.57 Aligned_cols=72 Identities=17% Similarity=0.548 Sum_probs=64.0
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCcchhhh---hhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCCh
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTI---ERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 300 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~---e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 300 (873)
...+|++++|.+||+||||+.|++|+|++|+...... ....++.+|+++.|.+|++||||..|++|+|++|+
T Consensus 13 LP~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 13 LPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp SSSSCCEEEETTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred CCCCcEEEECCCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence 3578999999999999999999999999999875431 23467899999999999999999999999999996
No 11
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.33 E-value=1.3e-12 Score=114.91 Aligned_cols=63 Identities=22% Similarity=0.373 Sum_probs=58.9
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHhhhH
Q 002862 476 ANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDA 538 (873)
Q Consensus 476 ~skeeAk~aFk~LL~e~~V~s~~tWe~~~~~i~~DpRy~al~~~~ERKqlFeeYl~~~~k~E~ 538 (873)
+.++.++++|+.||++++|+++++|++++++|.+||||.+|.+..+|+++|++||.++++++.
T Consensus 14 ~r~~k~~~~F~~mL~e~~I~~~s~W~~~~~~i~~Dpry~av~~~~eRe~lF~eYi~~l~~~e~ 76 (83)
T 2doe_A 14 TRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLD 76 (83)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHTTSTHHHHCCCHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 467789999999999999999999999999999999999999999999999999999987654
No 12
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.26 E-value=7.3e-13 Score=116.59 Aligned_cols=71 Identities=25% Similarity=0.519 Sum_probs=64.1
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHHHHHHHH
Q 002862 534 KKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKE 605 (873)
Q Consensus 534 ~k~E~eekr~~~kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~~L~kke 605 (873)
+++|+++++.+..+++++|+.||++++ |+++++|.+|.++|.+||||++|.++.+|++||++||..|++++
T Consensus 5 r~~EkEek~~r~~k~~~~F~~mL~e~~-I~~~s~W~~~~~~i~~Dpry~av~~~~eRe~lF~eYi~~l~~~e 75 (83)
T 2doe_A 5 SSGEKEDSKTRGEKIKSDFFELLSNHH-LDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNL 75 (83)
T ss_dssp CSSCCCCSSCCHHHHHHHHHHHHHHTT-CCTTCCHHHHHHHHTTSTHHHHCCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCCCcHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 345667777778899999999999986 99999999999999999999999999999999999999998653
No 13
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.6e-12 Score=105.37 Aligned_cols=53 Identities=25% Similarity=0.432 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHH
Q 002862 479 LEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLG 531 (873)
Q Consensus 479 eeAk~aFk~LL~e~~V~s~~tWe~~~~~i~~DpRy~al~~~~ERKqlFeeYl~ 531 (873)
++++..|++||.+++|+++++|+....+|++||||.+|++...|+.+|++||+
T Consensus 6 ~d~k~~F~~LL~e~~InPys~W~~e~~ki~~DpRY~~l~s~~~R~e~F~ew~r 58 (59)
T 2juc_A 6 IDERNIFFELFDRYKLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEWCG 58 (59)
T ss_dssp CSSHHHHHHHHHHTTCCTTTCSHHHHHHHSSSTTGGGSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCCchhhhcccccCCCCeeecCChHHHHHHHHHHhh
Confidence 35789999999999999999999999999999999999999999999999996
No 14
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=2.7e-11 Score=101.79 Aligned_cols=52 Identities=27% Similarity=0.532 Sum_probs=46.1
Q ss_pred CCcEEEEcCCCCceeecCCCcccccCCCCcchhhh--hhccCCCCcEEEeCCCC
Q 002862 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTI--ERADASTDWKEFTSPDG 282 (873)
Q Consensus 231 ~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~--e~~~~~~~W~e~~~~~G 282 (873)
..|.+|++.|||+||||..|++|+|++|.+++++. ++++..++|++-.+.+|
T Consensus 20 t~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk~~~e~dr~l~~~P~k~~~~~~~ 73 (73)
T 2dk7_A 20 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEPPHKKSGPSSG 73 (73)
T ss_dssp SSCEEEEESSSCEEEEETTTTEECSSCCTTTTTCSHHHHHHHSCTTTSSSCSCC
T ss_pred CCcEEEECCCCCEEEecCcccceeccCChHhcCHHHHHHHHhcCCccccCCCCC
Confidence 36999999999999999999999999999999884 57888999998776554
No 15
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.05 E-value=2.8e-10 Score=98.48 Aligned_cols=61 Identities=21% Similarity=0.489 Sum_probs=56.7
Q ss_pred HHHHhHHHHHHHHHhc-ccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHHHHHHH
Q 002862 544 KLKKARDDYKKMLEES-VELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQK 604 (873)
Q Consensus 544 ~~kkare~F~~lLee~-~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~~L~kk 604 (873)
++++++++|+.||++. +.|+.+++|.+|+.+|+++++|++|.++.+|+.||++||..|+++
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~~fkav~~E~eR~~lFeeYi~~Lkek 68 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHE 68 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4578899999999998 479999999999999999999999999999999999999999875
No 16
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=98.99 E-value=2e-10 Score=85.42 Aligned_cols=34 Identities=50% Similarity=0.986 Sum_probs=31.1
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCcch
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELM 262 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~ 262 (873)
....|++|++++||.||||..|++|+|++|.+++
T Consensus 4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~k 37 (37)
T 1e0l_A 4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK 37 (37)
T ss_dssp SSCSCEEEECTTSCEEEEETTTTEEESSCCSSCC
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEecCCCccC
Confidence 3568999999999999999999999999999864
No 17
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.93 E-value=6.4e-10 Score=84.11 Aligned_cols=33 Identities=42% Similarity=0.882 Sum_probs=30.2
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
....|++|++++|+.||||..|++|+||+|.++
T Consensus 8 ~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~~ 40 (40)
T 2ysi_A 8 TEEIWVENKTPDGKVYYYNARTRESAWTKPDGV 40 (40)
T ss_dssp CCCSEEEEECTTSCEEEEETTTCCEESSCCSCC
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEeCCCCCC
Confidence 356899999999999999999999999999864
No 18
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=98.89 E-value=2.7e-09 Score=92.28 Aligned_cols=58 Identities=19% Similarity=0.422 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhcC--CCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHh
Q 002862 478 KLEAKNAFKALLESAN--VGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKK 535 (873)
Q Consensus 478 keeAk~aFk~LL~e~~--V~s~~tWe~~~~~i~~DpRy~al~~~~ERKqlFeeYl~~~~k 535 (873)
...++++|+.||++.+ |+.+++|+++..+|.+||+|.+|.+..+|+++|++||..+++
T Consensus 8 ~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~~fkav~~E~eR~~lFeeYi~~Lke 67 (77)
T 2cqn_A 8 MKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEH 67 (77)
T ss_dssp HHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3456889999999885 999999999999999999999999999999999999998875
No 19
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=98.84 E-value=6e-09 Score=88.67 Aligned_cols=55 Identities=27% Similarity=0.562 Sum_probs=51.2
Q ss_pred HHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHHHH
Q 002862 546 KKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDEL 601 (873)
Q Consensus 546 kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~~L 601 (873)
..++++|++||+++ +|+++++|+.+.++|.+||||.+|.+.++|+++|++|+.+.
T Consensus 15 eea~~~F~~LL~e~-~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~r 69 (71)
T 1uzc_A 15 EEAKQAFKELLKEK-RVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQT 69 (71)
T ss_dssp HHHHHHHHHHHHHT-TCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc-CcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHHHHh
Confidence 46789999999996 79999999999999999999999999999999999999764
No 20
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=98.80 E-value=2.1e-09 Score=79.91 Aligned_cols=34 Identities=44% Similarity=1.013 Sum_probs=31.3
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 302 (873)
....+|.++.+.+|++||||..|++|+|++|.++
T Consensus 3 ~~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~ 36 (37)
T 1e0l_A 3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL 36 (37)
T ss_dssp SSSCSCEEEECTTSCEEEEETTTTEEESSCCSSC
T ss_pred CCCCCeEEEECCCCCEEEEECCCCCEEecCCCcc
Confidence 4567999999999999999999999999999875
No 21
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=98.76 E-value=2.1e-09 Score=81.79 Aligned_cols=31 Identities=52% Similarity=1.091 Sum_probs=27.3
Q ss_pred CCCcEEEEcCCCCceeecCCCcccccCCCCc
Q 002862 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 260 (873)
Q Consensus 230 ~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~ 260 (873)
..+|++|++++|+.||||..|++|+|++|.+
T Consensus 11 ~~~W~e~~~~~G~~YYyN~~T~eS~We~P~e 41 (41)
T 1ywi_A 11 KSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41 (41)
T ss_dssp -CCEEEEEETTTEEEEEETTTTEEEESCC--
T ss_pred CCCcEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence 5689999999999999999999999999964
No 22
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.75 E-value=3.3e-09 Score=83.87 Aligned_cols=39 Identities=23% Similarity=0.641 Sum_probs=34.8
Q ss_pred CCCcEEEEcCCCCceeecCCCcccccCCCCcchhhhhhc
Q 002862 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERA 268 (873)
Q Consensus 230 ~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~ 268 (873)
...|.+|++.+|+.||||..|++++||+|.+++...+++
T Consensus 6 ~~~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~~~~~~~ 44 (50)
T 2dk1_A 6 SGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKT 44 (50)
T ss_dssp SCCEEECCCSTTCCCEEESSSCCEESSCCTTCCCCCSTT
T ss_pred CCCeEEEECCCCCEEEEECCCCCEEeeCChhhhhhHHhc
Confidence 357999999999999999999999999999997766554
No 23
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.74 E-value=7.3e-09 Score=78.41 Aligned_cols=32 Identities=38% Similarity=0.859 Sum_probs=29.4
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCc
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 260 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~ 260 (873)
...+|+++.|++||+||||+.|++|+|++|..
T Consensus 8 LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 8 LPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp CCTTCEEEECTTSCEEEECSSSCCEESSSCCC
T ss_pred CCCCceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 35689999999999999999999999999974
No 24
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.72 E-value=6.4e-09 Score=77.33 Aligned_cols=31 Identities=35% Similarity=0.866 Sum_probs=29.1
Q ss_pred CCCcEEEEcCCCCceeecCCCcccccCCCCc
Q 002862 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 260 (873)
Q Consensus 230 ~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~ 260 (873)
..+|+++.|++||+||||+.|++|+|++|+.
T Consensus 5 P~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 5 PPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 4689999999999999999999999999975
No 25
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=98.71 E-value=8.4e-09 Score=90.14 Aligned_cols=61 Identities=25% Similarity=0.465 Sum_probs=55.1
Q ss_pred HHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHHHHHHHHHHH
Q 002862 546 KKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAK 608 (873)
Q Consensus 546 kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~~L~kkeke~ 608 (873)
..+...|+.||.++ +|+++++|..+.++|.+||||.+|. ..+|+++|++|+.+..++++++
T Consensus 17 eea~~~Fk~LL~e~-~V~p~~tWe~~~~~i~~DpRY~aL~-~~eRK~~F~~y~~~r~~eeree 77 (82)
T 2dod_A 17 EARMKQFKDMLLER-GVSAFSTWEKELHKIVFDPRYLLLN-PKERKQVFDQYVKTRAEEERRS 77 (82)
T ss_dssp HHHHHHHHHHHHHT-TCCSSSCHHHHHHHHHTCSGGGTSC-HHHHHHHHHHHHHHHHHGGGSS
T ss_pred HHHHHHHHHHHHHc-CcCCCCCHHHHHHHHccCCccccCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999996 7999999999999999999999996 8999999999999988776654
No 26
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.71 E-value=8.2e-09 Score=78.55 Aligned_cols=34 Identities=21% Similarity=0.654 Sum_probs=30.4
Q ss_pred CCCCCCcEEEEcCCCCceeecCCCcccccCCCCc
Q 002862 227 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 260 (873)
Q Consensus 227 ~~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~ 260 (873)
.+...+|+++.|++||+||||+.|++|+|++|+.
T Consensus 7 ~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr~ 40 (41)
T 1wr7_A 7 SFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40 (41)
T ss_dssp CSSCTTEEEEECTTSCEEEEETTTTEEESSCGGG
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCCeecCCCCC
Confidence 3446799999999999999999999999999973
No 27
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.70 E-value=7.9e-09 Score=78.11 Aligned_cols=34 Identities=41% Similarity=0.901 Sum_probs=31.0
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 302 (873)
.....|.++.+.+|++||||..|++|+|++|.++
T Consensus 7 ~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~~ 40 (40)
T 2ysi_A 7 GTEEIWVENKTPDGKVYYYNARTRESAWTKPDGV 40 (40)
T ss_dssp CCCCSEEEEECTTSCEEEEETTTCCEESSCCSCC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEEeCCCCCC
Confidence 4577999999999999999999999999999753
No 28
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.70 E-value=8.7e-09 Score=76.15 Aligned_cols=30 Identities=33% Similarity=0.834 Sum_probs=28.4
Q ss_pred CCCcEEEEcCCCCceeecCCCcccccCCCC
Q 002862 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPF 259 (873)
Q Consensus 230 ~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~ 259 (873)
..+|+++.|.+||+||||+.|++|+|++|+
T Consensus 6 P~GWe~~~d~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 6 PPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp CTTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence 468999999999999999999999999996
No 29
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.68 E-value=9.1e-09 Score=79.14 Aligned_cols=32 Identities=38% Similarity=0.919 Sum_probs=29.8
Q ss_pred CCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 230 ~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
..+|+++.|.+||+||||+.|++|+|++|..+
T Consensus 10 P~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~ 41 (43)
T 1ymz_A 10 PPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41 (43)
T ss_dssp CSSEEEEECTTSCEEEEETTTTEEESSCCCSC
T ss_pred CCCCEEEECCCCCEEEEECCCCCCcccCCccc
Confidence 45899999999999999999999999999865
No 30
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.65 E-value=1.9e-08 Score=75.71 Aligned_cols=32 Identities=31% Similarity=0.742 Sum_probs=29.3
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCc
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 260 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~ 260 (873)
...+|+++.|++||+||||+.|++|+|++|..
T Consensus 7 LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~~ 38 (39)
T 2kyk_A 7 LPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL 38 (39)
T ss_dssp CCSSCEEEECTTSCEEEECSSSCCEECCCCCC
T ss_pred CCCCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 35689999999999999999999999999973
No 31
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.9e-08 Score=77.30 Aligned_cols=33 Identities=27% Similarity=0.747 Sum_probs=30.0
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
...+|++++|++||+||||+.|++|+|++|...
T Consensus 8 LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~~ 40 (43)
T 2dmv_A 8 LPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP 40 (43)
T ss_dssp CCTTEEEEECTTSCEEEEETTTCCEESSCSSSC
T ss_pred CCCCceEEECCCCCEEEEECCCCCEecCCcCCC
Confidence 356899999999999999999999999999753
No 32
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.62 E-value=1.9e-08 Score=74.25 Aligned_cols=30 Identities=40% Similarity=1.007 Sum_probs=28.4
Q ss_pred CCCcEEEEcCCCCceeecCCCcccccCCCC
Q 002862 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPF 259 (873)
Q Consensus 230 ~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~ 259 (873)
..+|+++.|++||+||||+.|++|+|++|.
T Consensus 6 P~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 6 PSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp CTTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence 568999999999999999999999999996
No 33
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.62 E-value=2e-08 Score=77.28 Aligned_cols=40 Identities=23% Similarity=0.594 Sum_probs=31.2
Q ss_pred ccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHH
Q 002862 254 TWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302 (873)
Q Consensus 254 tWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 302 (873)
+|++|.. ++.+|++..|.+|++||||..|++|+|++|..+
T Consensus 2 ~we~~~~---------LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~ 41 (43)
T 1ymz_A 2 SHGRSMP---------LPPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41 (43)
T ss_dssp -----CC---------CCSSEEEEECTTSCEEEEETTTTEEESSCCCSC
T ss_pred CcccCCC---------CCCCCEEEECCCCCEEEEECCCCCCcccCCccc
Confidence 6888853 567999999999999999999999999999753
No 34
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.61 E-value=2.8e-08 Score=75.19 Aligned_cols=31 Identities=32% Similarity=0.791 Sum_probs=29.1
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCC
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPF 259 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~ 259 (873)
...+|+++.|.+||+||||+.|++|+|++|+
T Consensus 8 LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 8 LPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp CCTTEEEEECSSSCEEEEESSSCCEECCCCC
T ss_pred CCCCcEEEEcCCCCEEEEECCCCcCcCCCCC
Confidence 4578999999999999999999999999997
No 35
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=98.60 E-value=1.4e-08 Score=75.89 Aligned_cols=31 Identities=26% Similarity=0.785 Sum_probs=28.9
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCC
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPF 259 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~ 259 (873)
...+|+++.|.+||+||||+.|++|+|++|+
T Consensus 7 LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 7 LPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp CSSSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred CCCCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 3578999999999999999999999999996
No 36
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=98.60 E-value=2.1e-08 Score=76.26 Aligned_cols=33 Identities=58% Similarity=1.097 Sum_probs=27.5
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
.+..+|.++.+.+|++||||..|++|+|++|.+
T Consensus 9 ~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~e 41 (41)
T 1ywi_A 9 SAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41 (41)
T ss_dssp ---CCEEEEEETTTEEEEEETTTTEEEESCC--
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence 457799999999999999999999999999964
No 37
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=98.58 E-value=3.3e-08 Score=77.04 Aligned_cols=34 Identities=21% Similarity=0.603 Sum_probs=30.6
Q ss_pred CCCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 228 ~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
+...+|+++.|.+||+||||+.|++|+|++|+..
T Consensus 10 ~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~~ 43 (46)
T 2ez5_W 10 PLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNG 43 (46)
T ss_dssp CCCTTEEEEECTTSSEEEEETTTTEEESBCTTTC
T ss_pred CCCcCcEEEEcCCCCEEEEECCCCCEeccCCCCC
Confidence 3457999999999999999999999999999853
No 38
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.57 E-value=3.8e-08 Score=74.45 Aligned_cols=32 Identities=22% Similarity=0.550 Sum_probs=29.5
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCc
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 260 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~ 260 (873)
...+|+++.|.+||+||||+.|++|+|++|+.
T Consensus 8 LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr~ 39 (40)
T 2ysf_A 8 LPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT 39 (40)
T ss_dssp CCSSEEEEECTTCCEEEEETTTCCEESSCTTT
T ss_pred CCcCcEEEEcCCCCEEEEECCCCcEecCCCCC
Confidence 35799999999999999999999999999974
No 39
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=98.57 E-value=3.5e-08 Score=75.42 Aligned_cols=33 Identities=21% Similarity=0.563 Sum_probs=30.2
Q ss_pred CCCCCcEEEEcCCCCceeecCCCcccccCCCCc
Q 002862 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 260 (873)
Q Consensus 228 ~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~ 260 (873)
+...+|+++.|.+||+||||+.|++|+|++|+.
T Consensus 7 ~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 7 PLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp CCCSSEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCcCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 345799999999999999999999999999975
No 40
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.54 E-value=6.5e-08 Score=76.36 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=40.0
Q ss_pred cccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 251 RVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 251 ~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
|.|+|+.|+.. ..++.+|++..|.+|++||+|..|++|+|+.|..
T Consensus 1 ~tt~W~~P~~~------~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 1 GSSGSSGPLER------EGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp CCSSSCCSCCS------SCCCTTEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CeecCcCCCCC------CCCCcCcEEEECCCCCEEEEECCCCCEeccCcCC
Confidence 46899999853 4689999999999999999999999999999963
No 41
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=98.53 E-value=6.7e-08 Score=75.29 Aligned_cols=33 Identities=21% Similarity=0.677 Sum_probs=30.0
Q ss_pred CCCCCcEEEEcCCCCceeecCCCcccccCCCCc
Q 002862 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 260 (873)
Q Consensus 228 ~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~ 260 (873)
+...+|+++.|.+|++||||+.|++|+|++|+.
T Consensus 11 ~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~ 43 (46)
T 2l4j_A 11 PLPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43 (46)
T ss_dssp CCCTTCEEEECTTSCEEEEETTTTEEECSCCSS
T ss_pred CCCcCceeEECCCCCEEEEECCCCCEeCCCCCc
Confidence 345799999999999999999999999999974
No 42
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.52 E-value=4.4e-08 Score=77.42 Aligned_cols=33 Identities=21% Similarity=0.707 Sum_probs=30.3
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
...+|+++.|.+||+||||+.|++|+|++|+..
T Consensus 13 LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~~ 45 (49)
T 2kpz_A 13 LPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK 45 (49)
T ss_dssp CCTTEEEEECTTSCEEEEETTTTEEESSCTTCC
T ss_pred CCCCcEEEECCCCCEEEEECCCCCEecCCCCCC
Confidence 357999999999999999999999999999864
No 43
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.51 E-value=7.3e-08 Score=71.56 Aligned_cols=33 Identities=36% Similarity=0.864 Sum_probs=30.7
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
.++.+|+++.|.+|++||||..|++|+|++|..
T Consensus 3 ~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CSCTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 478899999999999999999999999999964
No 44
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=98.49 E-value=1e-07 Score=77.29 Aligned_cols=51 Identities=20% Similarity=0.435 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHH
Q 002862 548 ARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLD 599 (873)
Q Consensus 548 are~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~ 599 (873)
++..|++||.+. +|++++.|.....+|.+||||.+|.+++.|+++|++|++
T Consensus 8 ~k~~F~~LL~e~-~InPys~W~~e~~ki~~DpRY~~l~s~~~R~e~F~ew~r 58 (59)
T 2juc_A 8 ERNIFFELFDRY-KLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEWCG 58 (59)
T ss_dssp SHHHHHHHHHHT-TCCTTTCSHHHHHHHSSSTTGGGSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCCCchhhhcccccCCCCeeecCChHHHHHHHHHHhh
Confidence 678999999986 699999999999999999999999999999999999986
No 45
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=98.49 E-value=7.7e-08 Score=76.32 Aligned_cols=33 Identities=27% Similarity=0.751 Sum_probs=30.2
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
...+|+++.|.+||+||||+.|++|+|++|+..
T Consensus 12 LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~~ 44 (50)
T 1i5h_W 12 LPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ 44 (50)
T ss_dssp CSTTEEEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred CCcCcEEEEcCCCCEEEEECCCCCEEeeCCCCC
Confidence 456899999999999999999999999999864
No 46
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.49 E-value=7.6e-08 Score=75.96 Aligned_cols=34 Identities=26% Similarity=0.727 Sum_probs=30.7
Q ss_pred CCCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 228 ~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
+...+|++.+|++||+||||+.|++|+|++|+..
T Consensus 11 ~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~~ 44 (49)
T 2ysb_A 11 PLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLES 44 (49)
T ss_dssp CCCTTEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred CCCCCceEEECCCCCEEEEEcCCCCEEecCCCCC
Confidence 3457899999999999999999999999999854
No 47
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.47 E-value=5.9e-08 Score=66.82 Aligned_cols=27 Identities=22% Similarity=0.578 Sum_probs=24.0
Q ss_pred CCcEEEEcCCCCceeecCCCcccccCCC
Q 002862 231 TDWKEHTSADGRRYYFNKRTRVSTWDKP 258 (873)
Q Consensus 231 ~~W~~~~~~~Gr~YYyN~~T~~stWe~P 258 (873)
.+|+ +...+||.||||..|++|+|++|
T Consensus 1 ~gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 1 PGWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CCEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCCe-EECCCCCeEEEECCCCCEeccCC
Confidence 3799 65668999999999999999998
No 48
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=98.45 E-value=2.1e-07 Score=75.53 Aligned_cols=54 Identities=22% Similarity=0.441 Sum_probs=49.0
Q ss_pred HHhHHHHHHHHHhcccCCCcccHHHHHHHh-cCChhhhhcCC-hHHHHHHHHHHHHH
Q 002862 546 KKARDDYKKMLEESVELTSSTRWSKAVTMF-ENDERFKALER-ERDRKDMFDDHLDE 600 (873)
Q Consensus 546 kkare~F~~lLee~~~i~~~trW~~a~~~~-~~Dprfkav~~-e~eRe~lF~eyi~~ 600 (873)
..|.++|++||+++ +|.+..+|..+.+.| .+||||.+|.+ ..+|+++|++|+..
T Consensus 3 eEae~aF~~lL~~~-~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~~ 58 (59)
T 2b7e_A 3 MEAEKEFITMLKEN-QVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSN 58 (59)
T ss_dssp THHHHHHHHHHHHT-TCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHc-CCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHhc
Confidence 35778999999986 899999999999999 89999999995 89999999999853
No 49
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=98.44 E-value=9.4e-08 Score=76.98 Aligned_cols=34 Identities=32% Similarity=0.670 Sum_probs=30.4
Q ss_pred CCCCcEEEEcC-CCCceeecCCCcccccCCCCcch
Q 002862 229 VQTDWKEHTSA-DGRRYYFNKRTRVSTWDKPFELM 262 (873)
Q Consensus 229 ~~~~W~~~~~~-~Gr~YYyN~~T~~stWe~P~~~~ 262 (873)
.+.+|+++.|. +||+||||+.|++|+|++|....
T Consensus 8 LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~~ 42 (54)
T 2jv4_A 8 LPAGWEVRHSNSKNLPYYFNPATRESRWEPPADTD 42 (54)
T ss_dssp CCSSCCEEECSSSSCEEEEETTTTEEESSCCTTSC
T ss_pred CCCCcEEEEECCCCCEEEEECCCCcEEecCCCCcc
Confidence 45789999997 79999999999999999998753
No 50
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=98.43 E-value=9.7e-08 Score=75.29 Aligned_cols=34 Identities=15% Similarity=0.361 Sum_probs=30.4
Q ss_pred CCCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 228 ~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
+...+|+++.|.+||+||||+.|++|+|++|+..
T Consensus 13 ~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~~ 46 (49)
T 2zaj_A 13 ELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGP 46 (49)
T ss_dssp CCCTTEEEEEETTTEEEEEETTTTEEESSCCCSS
T ss_pred CCCcCceEEEcCCCCEEEEeCCCCCEecCCCCCC
Confidence 3457899999999999999999999999999753
No 51
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.43 E-value=1.6e-07 Score=71.01 Aligned_cols=33 Identities=33% Similarity=0.903 Sum_probs=30.6
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
.++.+|+++.|.+|++||||..|++|+|++|..
T Consensus 7 ~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 7 GLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp SCCTTCEEEECTTSCEEEECSSSCCEESSSCCC
T ss_pred CCCCCceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 578899999999999999999999999999963
No 52
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.42 E-value=1.6e-07 Score=69.32 Aligned_cols=32 Identities=28% Similarity=0.671 Sum_probs=30.1
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCCh
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 300 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 300 (873)
.++.+|++..|.+|++||||..|++|+|+.|.
T Consensus 4 ~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 4 PLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp CSCTTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence 47889999999999999999999999999995
No 53
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.42 E-value=8.1e-08 Score=75.94 Aligned_cols=34 Identities=29% Similarity=0.765 Sum_probs=31.2
Q ss_pred CCCCcEEEeCCCCCeEEEeCCCCeeeccCChHHH
Q 002862 270 ASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELK 303 (873)
Q Consensus 270 ~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~ 303 (873)
..+.|.++.+.+|+.||||..|++++|++|.++.
T Consensus 5 ~~~~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~ 38 (50)
T 2dk1_A 5 SSGRWVEGITSEGYHYYYDLISGASQWEKPEGFQ 38 (50)
T ss_dssp CSCCEEECCCSTTCCCEEESSSCCEESSCCTTCC
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEeeCChhhh
Confidence 4568999999999999999999999999998874
No 54
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.39 E-value=1.6e-07 Score=70.45 Aligned_cols=31 Identities=26% Similarity=0.806 Sum_probs=27.7
Q ss_pred CCCCCcEEEEcCCCCceeecCCCcccccCCCC
Q 002862 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPF 259 (873)
Q Consensus 228 ~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~ 259 (873)
+...+|+++.|++|+ ||||+.|++|+|++|.
T Consensus 8 ~LP~GWe~~~~~~G~-YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 8 GLPPGWRKIHDAAGT-YYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCTTEEEEEETTEE-EEEESSSCCEESSCCC
T ss_pred CCCCCcEEEEcCCCC-EEEEcCCCCEeccCCC
Confidence 345789999999995 9999999999999995
No 55
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.38 E-value=2e-07 Score=64.13 Aligned_cols=27 Identities=30% Similarity=0.607 Sum_probs=24.3
Q ss_pred CCcEEEeCCCCCeEEEeCCCCeeeccCC
Q 002862 272 TDWKEFTSPDGRKYYYNKVTKQSKWSLP 299 (873)
Q Consensus 272 ~~W~e~~~~~Gr~YyyN~~T~es~We~P 299 (873)
.+|+ +...+|+.||||..|++|+|+.|
T Consensus 1 ~gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 1 PGWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CCEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCCe-EECCCCCeEEEECCCCCEeccCC
Confidence 3799 66679999999999999999988
No 56
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.38 E-value=2.5e-07 Score=70.29 Aligned_cols=34 Identities=24% Similarity=0.584 Sum_probs=31.3
Q ss_pred ccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 268 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
..++.+|++..|.+|++||||..|++|+|+.|..
T Consensus 7 ~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr~ 40 (41)
T 1wr7_A 7 SFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40 (41)
T ss_dssp CSSCTTEEEEECTTSCEEEEETTTTEEESSCGGG
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCCeecCCCCC
Confidence 4678999999999999999999999999999963
No 57
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=1.7e-07 Score=78.97 Aligned_cols=37 Identities=32% Similarity=0.556 Sum_probs=33.2
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHHHHH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLA 305 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~ 305 (873)
...+.|.++.+.+||+||||..|++|+|++|+++...
T Consensus 17 ipgt~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk~~ 53 (73)
T 2dk7_A 17 IPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGR 53 (73)
T ss_dssp CSSSSCEEEEESSSCEEEEETTTTEECSSCCTTTTTC
T ss_pred CCCCCcEEEECCCCCEEEecCcccceeccCChHhcCH
Confidence 3457999999999999999999999999999998743
No 58
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=98.37 E-value=2.2e-07 Score=80.18 Aligned_cols=33 Identities=45% Similarity=0.818 Sum_probs=30.2
Q ss_pred CCCCCcEEEEcCCCCceeecCCCcccccCCCCc
Q 002862 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 260 (873)
Q Consensus 228 ~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~ 260 (873)
....+|+++++.+||+||||+.|++|+|++|.+
T Consensus 43 ~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~e 75 (75)
T 2jxw_A 43 AVKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75 (75)
T ss_dssp SCCCSEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCCccEEEEECCCCCEEEEECcCCCEeccCcCC
Confidence 446789999999999999999999999999974
No 59
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.35 E-value=1.2e-07 Score=75.73 Aligned_cols=32 Identities=34% Similarity=0.691 Sum_probs=29.2
Q ss_pred CCCcEEEEcC-CCCceeecCCCcccccCCCCcc
Q 002862 230 QTDWKEHTSA-DGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 230 ~~~W~~~~~~-~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
..+|+++.|. +||.||||..|++|+||+|.+.
T Consensus 12 P~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~ 44 (52)
T 2jx8_A 12 HAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG 44 (52)
T ss_dssp HHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred CcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence 4689999996 7999999999999999999865
No 60
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=98.35 E-value=2.5e-07 Score=69.17 Aligned_cols=32 Identities=28% Similarity=0.646 Sum_probs=30.3
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCCh
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 300 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 300 (873)
.++.+|++..|.+|++||||..|++|+|++|+
T Consensus 6 ~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 6 PLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp CCSSSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 57899999999999999999999999999996
No 61
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=98.35 E-value=2.7e-07 Score=73.96 Aligned_cols=34 Identities=24% Similarity=0.548 Sum_probs=30.6
Q ss_pred CCCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 228 ~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
+...+|++..|.+||+||||+.|++|+|+.|+..
T Consensus 18 ~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~~ 51 (53)
T 2jmf_A 18 PLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPG 51 (53)
T ss_dssp CCCTTEEEEECTTSCEEEEETTTCCEESSCCCSS
T ss_pred CCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCCC
Confidence 3467999999999999999999999999999853
No 62
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.34 E-value=3.4e-07 Score=68.81 Aligned_cols=32 Identities=25% Similarity=0.637 Sum_probs=30.3
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCCh
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 300 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 300 (873)
.++.+|++..|.+|++||||..|++|+|++|.
T Consensus 6 ~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~ 37 (39)
T 2kyk_A 6 PLPPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37 (39)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSCCEECCCCC
T ss_pred CCCCCcEEEEcCCCCEEEEECCCCCEeccCCC
Confidence 57889999999999999999999999999996
No 63
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.34 E-value=4.1e-07 Score=67.04 Aligned_cols=32 Identities=28% Similarity=0.712 Sum_probs=30.0
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCCh
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 300 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 300 (873)
.++.+|++..|.+|++||||..|++|+|++|.
T Consensus 4 ~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 4 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp TCCTTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence 46889999999999999999999999999995
No 64
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.33 E-value=2.5e-07 Score=72.96 Aligned_cols=34 Identities=18% Similarity=0.475 Sum_probs=30.6
Q ss_pred CCCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 228 ~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
....+|++..|.+|++||+|+.|++|+|++|...
T Consensus 13 ~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~~ 46 (49)
T 2dwv_A 13 GLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGP 46 (49)
T ss_dssp CCCTTEEEEEETTTEEEEEETTTTEEESSCCCCC
T ss_pred CCCcCcEEEECCCCCEEEEECCCCCEeccCcCCC
Confidence 3457899999999999999999999999999753
No 65
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=98.31 E-value=3.2e-07 Score=68.37 Aligned_cols=30 Identities=23% Similarity=0.658 Sum_probs=27.9
Q ss_pred CCCcEEEEcCCCCceeecCCCcccccCCCCc
Q 002862 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 260 (873)
Q Consensus 230 ~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~ 260 (873)
..+|+++.|.+| +||||+.|++|+|++|..
T Consensus 5 P~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 5 PAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp CTTEEEEECSSC-EEEEETTTTEEESSCCCC
T ss_pred CCCceEEEeCCC-CEEEecCCCCEeccCCCC
Confidence 468999999999 999999999999999975
No 66
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=98.31 E-value=4.8e-08 Score=89.20 Aligned_cols=58 Identities=10% Similarity=0.287 Sum_probs=51.4
Q ss_pred CCCcEEEEcCCCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 230 ~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
+.+|+.+.+..|++||.|+.+.. ...++.||++.+|.+|++||.|..|++|+|++|..
T Consensus 47 p~~we~~~~~~~lV~~vn~~~d~--------------~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl 104 (109)
T 3l4h_A 47 ARNFERYQHNRDLVNFINMFADT--------------RLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRI 104 (109)
T ss_dssp THHHHHHTTCHHHHHHHHTTCCT--------------TSCCCTTEEEEECTTCCEEEEETTTTEEESSCSCC
T ss_pred CcChhhhcCcCCceEEeccCCCC--------------CCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCc
Confidence 46899999999999999999742 23578999999999999999999999999999964
No 67
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=2.3e-07 Score=76.09 Aligned_cols=34 Identities=15% Similarity=0.365 Sum_probs=30.6
Q ss_pred CCCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 228 ~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
+.+.+|+++.|.+||+||||+.|+.|+|++|+..
T Consensus 13 ~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~~ 46 (60)
T 2yse_A 13 ELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLE 46 (60)
T ss_dssp SCCSSEEEEECSSSCEEEEETTTTEEESSCHHHH
T ss_pred CCCCCcEEEECCCCCEEEEeCCCCCeeccCCCch
Confidence 3457899999999999999999999999999754
No 68
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=5.1e-07 Score=69.33 Aligned_cols=33 Identities=27% Similarity=0.711 Sum_probs=30.7
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
.++.+|++..|.+|++||||..|++|+|++|..
T Consensus 7 ~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~ 39 (43)
T 2dmv_A 7 GLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSG 39 (43)
T ss_dssp SCCTTEEEEECTTSCEEEEETTTCCEESSCSSS
T ss_pred CCCCCceEEECCCCCEEEEECCCCCEecCCcCC
Confidence 578899999999999999999999999999964
No 69
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=98.27 E-value=5.2e-07 Score=72.63 Aligned_cols=34 Identities=26% Similarity=0.647 Sum_probs=31.3
Q ss_pred cCCCCcEEEeCC-CCCeEEEeCCCCeeeccCChHH
Q 002862 269 DASTDWKEFTSP-DGRKYYYNKVTKQSKWSLPDEL 302 (873)
Q Consensus 269 ~~~~~W~e~~~~-~Gr~YyyN~~T~es~We~P~~~ 302 (873)
.++.+|++..|. +|++||||..||+|+|++|...
T Consensus 7 ~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 7 GLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp CCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 578999999996 8999999999999999999775
No 70
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.27 E-value=5.9e-07 Score=67.86 Aligned_cols=32 Identities=34% Similarity=0.698 Sum_probs=30.3
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCCh
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 300 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 300 (873)
.++.+|++..|.+|++||||..|++|+|+.|.
T Consensus 7 ~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 7 GLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp CCCTTEEEEECSSSCEEEEESSSCCEECCCCC
T ss_pred CCCCCcEEEEcCCCCEEEEECCCCcCcCCCCC
Confidence 57899999999999999999999999999996
No 71
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.27 E-value=6.5e-07 Score=70.70 Aligned_cols=34 Identities=24% Similarity=0.582 Sum_probs=31.3
Q ss_pred ccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 268 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
..++.+|++..|.+|++||||..|++|+|++|..
T Consensus 11 ~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~ 44 (49)
T 2kpz_A 11 GFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44 (49)
T ss_dssp -CCCTTEEEEECTTSCEEEEETTTTEEESSCTTC
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCEecCCCCC
Confidence 4688999999999999999999999999999975
No 72
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.27 E-value=7e-07 Score=72.64 Aligned_cols=34 Identities=21% Similarity=0.616 Sum_probs=31.0
Q ss_pred CCCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 228 ~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
+...+|++..|.+||+||||+.|+.|+|+.|+..
T Consensus 14 ~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~~ 47 (57)
T 2ysd_A 14 PLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCL 47 (57)
T ss_dssp SCCSSEEEEECSSCCEEEEETTTTEEESSCTTTC
T ss_pred CCCcCcEEEECCCCCEEEEECCCCcEecCCCCCc
Confidence 3468999999999999999999999999999865
No 73
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.24 E-value=8.3e-07 Score=67.06 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=30.8
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
.++.+|++..|.+|++||||..|++|+|+.|..
T Consensus 7 ~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr~ 39 (40)
T 2ysf_A 7 GLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT 39 (40)
T ss_dssp CCCSSEEEEECTTCCEEEEETTTCCEESSCTTT
T ss_pred CCCcCcEEEEcCCCCEEEEECCCCcEecCCCCC
Confidence 578999999999999999999999999999963
No 74
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=98.23 E-value=8.1e-07 Score=67.82 Aligned_cols=34 Identities=15% Similarity=0.440 Sum_probs=31.3
Q ss_pred ccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 268 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
..++.+|++..|.+|++||||..|++|+|+.|..
T Consensus 6 ~~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 6 GPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp SCCCSSEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCCcCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 3578999999999999999999999999999964
No 75
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=98.20 E-value=1.1e-06 Score=68.35 Aligned_cols=33 Identities=18% Similarity=0.673 Sum_probs=31.0
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
.++.+|++.+|.+|++||||..|++|+|++|..
T Consensus 10 ~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~ 42 (46)
T 2ez5_W 10 PLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42 (46)
T ss_dssp CCCTTEEEEECTTSSEEEEETTTTEEESBCTTT
T ss_pred CCCcCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 578999999999999999999999999999965
No 76
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=98.20 E-value=9.2e-07 Score=71.21 Aligned_cols=33 Identities=15% Similarity=0.461 Sum_probs=30.4
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
...+|++..|.+|++||+|+.|+.|+|+.|+..
T Consensus 12 LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~~ 44 (54)
T 1wmv_A 12 LPYGWEQETDENGQVFFVDHINKRTTYLDPRLA 44 (54)
T ss_dssp SCTTEEEEECTTSCEEEEESSSCCEESSCTTSS
T ss_pred CCcCcEEEECCCCCEEEEeCCCCCEeecCCCCc
Confidence 357899999999999999999999999999865
No 77
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=98.18 E-value=1.4e-06 Score=67.86 Aligned_cols=34 Identities=26% Similarity=0.642 Sum_probs=31.3
Q ss_pred ccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 268 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
..++.+|++..|.+|++||||..|++|+|+.|..
T Consensus 10 ~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~ 43 (46)
T 2l4j_A 10 GPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43 (46)
T ss_dssp SCCCTTCEEEECTTSCEEEEETTTTEEECSCCSS
T ss_pred CCCCcCceeEECCCCCEEEEECCCCCEeCCCCCc
Confidence 3578999999999999999999999999999963
No 78
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=98.16 E-value=1.4e-06 Score=69.02 Aligned_cols=34 Identities=29% Similarity=0.649 Sum_probs=31.2
Q ss_pred ccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 268 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
..++.+|++..|.+|++||||..|++|+|++|..
T Consensus 10 ~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~ 43 (50)
T 1i5h_W 10 GPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRM 43 (50)
T ss_dssp SSCSTTEEEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CCCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCC
Confidence 3578899999999999999999999999999964
No 79
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.14 E-value=1.8e-06 Score=68.16 Aligned_cols=33 Identities=33% Similarity=0.596 Sum_probs=31.0
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
.++.+|++.+|.+|++||||..|++|+|+.|..
T Consensus 11 ~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~ 43 (49)
T 2ysb_A 11 PLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLE 43 (49)
T ss_dssp CCCTTEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCCCceEEECCCCCEEEEEcCCCCEEecCCCC
Confidence 578899999999999999999999999999975
No 80
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=98.13 E-value=2e-06 Score=64.02 Aligned_cols=32 Identities=25% Similarity=0.701 Sum_probs=29.4
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
.++.+|++..|.+| +||||..|++|+|++|..
T Consensus 3 ~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 3 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp CSCTTEEEEECSSC-EEEEETTTTEEESSCCCC
T ss_pred cCCCCceEEEeCCC-CEEEecCCCCEeccCCCC
Confidence 46889999999999 999999999999999964
No 81
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.09 E-value=1.3e-06 Score=69.83 Aligned_cols=33 Identities=33% Similarity=0.706 Sum_probs=29.5
Q ss_pred cCCCCcEEEeCC-CCCeEEEeCCCCeeeccCChH
Q 002862 269 DASTDWKEFTSP-DGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 269 ~~~~~W~e~~~~-~Gr~YyyN~~T~es~We~P~~ 301 (873)
.++.+|+++.|. +|+.||||..||+|+|+.|..
T Consensus 10 ~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~ 43 (52)
T 2jx8_A 10 LVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVL 43 (52)
T ss_dssp HHHHTCCEEEETTTTEEEEEETTTTEEESSCCCC
T ss_pred CCCcCcEEEEccccCCEEEEECCCCCEEeCCCCC
Confidence 356799999985 799999999999999999965
No 82
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=98.08 E-value=2e-06 Score=67.83 Aligned_cols=34 Identities=15% Similarity=0.527 Sum_probs=31.1
Q ss_pred ccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 268 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
..++.+|++..|.+|++||+|..|++|+|++|..
T Consensus 12 ~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~ 45 (49)
T 2zaj_A 12 LELPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45 (49)
T ss_dssp SCCCTTEEEEEETTTEEEEEETTTTEEESSCCCS
T ss_pred CCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCC
Confidence 3578999999999999999999999999999964
No 83
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.08 E-value=1.6e-06 Score=68.86 Aligned_cols=31 Identities=23% Similarity=0.656 Sum_probs=28.5
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCc
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 260 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~ 260 (873)
...+|+++.|++| .||||+.|+.|||++|..
T Consensus 20 LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~~ 50 (55)
T 2e45_A 20 LPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 50 (55)
T ss_dssp CCTTEEEEEETTE-EEEEETTTCCEESSCCCC
T ss_pred CCCCCeEeecCCC-CEEEEcCCCCCccCCCCC
Confidence 3579999999999 999999999999999964
No 84
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=98.07 E-value=1.5e-06 Score=74.76 Aligned_cols=32 Identities=38% Similarity=0.808 Sum_probs=29.3
Q ss_pred CCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 230 ~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
..+|+++.|.+||+||||+.|++|+|++|+..
T Consensus 42 p~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~~ 73 (75)
T 1o6w_A 42 ENGWKAAKTADGKVYYYNPTTRETSWTIPAFE 73 (75)
T ss_dssp HHTCEEEECTTCCEEEEETTTTEEESSCCCCC
T ss_pred CCeEEEEECCCCCEEEEECCCCCEECCCCCCC
Confidence 35899999999999999999999999999753
No 85
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.06 E-value=2.6e-06 Score=76.37 Aligned_cols=37 Identities=57% Similarity=1.031 Sum_probs=33.8
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHHHHH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLA 305 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~ 305 (873)
.++.+|.++++.+|++||||..|++|+|++|..+...
T Consensus 11 ~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~ 47 (92)
T 2l5f_A 11 GAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTP 47 (92)
T ss_dssp BTTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCH
T ss_pred CCCCCcEEEEcCCCCEEEEECCCCceecccCcccccc
Confidence 4678999999999999999999999999999987644
No 86
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=98.04 E-value=4.1e-06 Score=72.46 Aligned_cols=61 Identities=18% Similarity=0.326 Sum_probs=51.5
Q ss_pred HhHHHHHHHHHHHhhcCccCCCCChHHHHHHHhcCchhhhhhcCCCCCChHHHHHHHHHHHHHHHH
Q 002862 689 KNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQ 754 (873)
Q Consensus 689 k~Rd~F~~LL~E~~k~g~I~~~t~W~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~veeL~k~~~ 754 (873)
.+...|++||.++|+++. .+|.|.++.|+.|+||.. +..++.+..+.||.+||+.|.++.+
T Consensus 18 EA~~~F~aLL~DlIr~pd----~sW~Eakr~LrKD~R~~~-~~~Ld~~ekE~LF~eHi~~L~~K~r 78 (85)
T 2dof_A 18 EAIQNFKALLSDMVRSSD----VSWSDTRRTLRKDHRWES-GSLLEREEKEKLFNEHIEALTKKKR 78 (85)
T ss_dssp HHHHHHHHHHHHHTCCSS----CCHHHHHHHHHHSSTHHH-HTTSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhcCCC----CCHHHHHHHhccCccccc-CCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999998654 589999999999999984 4457888889999999999976543
No 87
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=98.03 E-value=3.5e-06 Score=67.53 Aligned_cols=34 Identities=12% Similarity=0.419 Sum_probs=31.4
Q ss_pred ccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 268 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
..++.+|++..|.+|++||+|..|++|+|+.|..
T Consensus 17 ~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~ 50 (53)
T 2jmf_A 17 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP 50 (53)
T ss_dssp SCCCTTEEEEECTTSCEEEEETTTCCEESSCCCS
T ss_pred CCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCC
Confidence 3588999999999999999999999999999964
No 88
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=98.00 E-value=5.6e-06 Score=71.66 Aligned_cols=66 Identities=21% Similarity=0.493 Sum_probs=55.2
Q ss_pred HHHHHHHHHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhc--CChHHHHHHHHHHHHHHHHHH
Q 002862 539 EERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKAL--ERERDRKDMFDDHLDELKQKE 605 (873)
Q Consensus 539 eekr~~~kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav--~~e~eRe~lF~eyi~~L~kke 605 (873)
|.++.+.+.|...|.+||-+. .-++..+|.+++++|++|+||..+ .+-.+++.||++||+.|.++.
T Consensus 10 ere~h~r~EA~~~F~aLL~Dl-Ir~pd~sW~Eakr~LrKD~R~~~~~~Ld~~ekE~LF~eHi~~L~~K~ 77 (85)
T 2dof_A 10 EREQHKREEAIQNFKALLSDM-VRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKK 77 (85)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH-TCCSSCCHHHHHHHHHHSSTHHHHTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHhccCcccccCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 344556788999999999984 456889999999999999999843 456799999999999998763
No 89
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.99 E-value=3.7e-06 Score=63.00 Aligned_cols=32 Identities=19% Similarity=0.696 Sum_probs=29.0
Q ss_pred ccCCCCcEEEeCCCCCeEEEeCCCCeeeccCCh
Q 002862 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 300 (873)
Q Consensus 268 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 300 (873)
..++.+|++..|.+| .||||..|++|+|++|.
T Consensus 7 ~~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 7 GGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCCTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred CCCCCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence 357899999999999 59999999999999994
No 90
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=97.99 E-value=1.7e-06 Score=67.31 Aligned_cols=34 Identities=24% Similarity=0.651 Sum_probs=30.5
Q ss_pred CCCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 228 ~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
+...+|++..+++||.||+|++|++|+|++|+..
T Consensus 8 ~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~~ 41 (46)
T 1jmq_A 8 PLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKA 41 (46)
T ss_dssp CCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTS
T ss_pred CCCcCcEEEEcCCCceEEEEecCCceeecCCCch
Confidence 3457999999999999999999999999999854
No 91
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=4.4e-06 Score=68.54 Aligned_cols=34 Identities=15% Similarity=0.459 Sum_probs=31.6
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 302 (873)
.++.+|++..|.+|++||+|..|++|+|+.|...
T Consensus 13 ~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~~ 46 (60)
T 2yse_A 13 ELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLE 46 (60)
T ss_dssp SCCSSEEEEECSSSCEEEEETTTTEEESSCHHHH
T ss_pred CCCCCcEEEECCCCCEEEEeCCCCCeeccCCCch
Confidence 5789999999999999999999999999999764
No 92
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=97.97 E-value=2.9e-06 Score=75.35 Aligned_cols=30 Identities=27% Similarity=0.673 Sum_probs=28.5
Q ss_pred CCCcEEEEcCCCCceeecCCCcccccCCCC
Q 002862 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPF 259 (873)
Q Consensus 230 ~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~ 259 (873)
..+|+++.|.+||+||||+.|++|+|++|+
T Consensus 58 P~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 58 PPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp CSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred CCceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence 468999999999999999999999999996
No 93
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.96 E-value=5.7e-06 Score=67.30 Aligned_cols=34 Identities=21% Similarity=0.504 Sum_probs=31.5
Q ss_pred ccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 268 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
..++.+|++.+|.+|++||||..|++|+|+.|..
T Consensus 13 ~~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~ 46 (57)
T 2ysd_A 13 GPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRC 46 (57)
T ss_dssp CSCCSSEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCcCcEEEECCCCCEEEEECCCCcEecCCCCC
Confidence 3578999999999999999999999999999965
No 94
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=97.93 E-value=4.1e-06 Score=74.76 Aligned_cols=34 Identities=21% Similarity=0.526 Sum_probs=30.5
Q ss_pred CCCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 228 ~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
+...+|+++.|.+||+||||+.|++|+|+.|+..
T Consensus 55 ~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~~ 88 (90)
T 2kxq_A 55 PLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS 88 (90)
T ss_dssp CCCSSCCEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred ccCCCceEEECCCCCEEEEECCCCcEecCCCCcC
Confidence 3457999999999999999999999999999753
No 95
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=97.87 E-value=1e-05 Score=65.03 Aligned_cols=33 Identities=18% Similarity=0.513 Sum_probs=31.0
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
.++.+|++..|.+|++||+|..|++|+|+.|..
T Consensus 11 ~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~ 43 (54)
T 1wmv_A 11 DLPYGWEQETDENGQVFFVDHINKRTTYLDPRL 43 (54)
T ss_dssp CSCTTEEEEECTTSCEEEEESSSCCEESSCTTS
T ss_pred CCCcCcEEEECCCCCEEEEeCCCCCEeecCCCC
Confidence 578999999999999999999999999999965
No 96
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.83 E-value=1e-05 Score=64.23 Aligned_cols=32 Identities=25% Similarity=0.708 Sum_probs=29.8
Q ss_pred ccCCCCcEEEeCCCCCeEEEeCCCCeeeccCCh
Q 002862 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 300 (873)
Q Consensus 268 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 300 (873)
..++.+|+++.|.+| +||||..|++++|+.|.
T Consensus 18 ~~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~ 49 (55)
T 2e45_A 18 SDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPG 49 (55)
T ss_dssp SCCCTTEEEEEETTE-EEEEETTTCCEESSCCC
T ss_pred CCCCCCCeEeecCCC-CEEEEcCCCCCccCCCC
Confidence 358999999999999 99999999999999994
No 97
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=97.80 E-value=1.1e-05 Score=62.84 Aligned_cols=33 Identities=18% Similarity=0.646 Sum_probs=30.9
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
.++.+|++..+.+||.||+|..|++|+|++|..
T Consensus 8 ~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~ 40 (46)
T 1jmq_A 8 PLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRK 40 (46)
T ss_dssp CCCTTBCCBCCSSCCCBEEETTTTEEESSCTTT
T ss_pred CCCcCcEEEEcCCCceEEEEecCCceeecCCCc
Confidence 578999999999999999999999999999975
No 98
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=97.48 E-value=5.7e-05 Score=69.00 Aligned_cols=34 Identities=18% Similarity=0.493 Sum_probs=30.6
Q ss_pred CCCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 228 ~~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
+.+.||++..|++||+||.|+.|+.|+|+.|+..
T Consensus 72 pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl~ 105 (109)
T 3l4h_A 72 ELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIP 105 (109)
T ss_dssp CCCTTEEEEECTTCCEEEEETTTTEEESSCSCCS
T ss_pred CCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCcc
Confidence 3457899999999999999999999999999854
No 99
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=97.44 E-value=5.6e-05 Score=74.98 Aligned_cols=33 Identities=36% Similarity=0.795 Sum_probs=27.9
Q ss_pred CCCCcEEEEcC-CCCceeecCCCcccccCCCCcc
Q 002862 229 VQTDWKEHTSA-DGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 229 ~~~~W~~~~~~-~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
.+.+|+++.|+ +||+||||+.|++|+|++|...
T Consensus 10 LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~ 43 (166)
T 3tc5_A 10 LPPGWEKAMSRSSGRVYYFNHITNASQWERPSGN 43 (166)
T ss_dssp CCTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred CCCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence 46799999995 8999999999999999999754
No 100
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=96.95 E-value=0.0005 Score=68.16 Aligned_cols=34 Identities=32% Similarity=0.763 Sum_probs=28.8
Q ss_pred cCCCCcEEEeC-CCCCeEEEeCCCCeeeccCChHH
Q 002862 269 DASTDWKEFTS-PDGRKYYYNKVTKQSKWSLPDEL 302 (873)
Q Consensus 269 ~~~~~W~e~~~-~~Gr~YyyN~~T~es~We~P~~~ 302 (873)
.++.+|++..| ..|++||||..|++|+|+.|...
T Consensus 9 ~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~ 43 (166)
T 3tc5_A 9 KLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGN 43 (166)
T ss_dssp -CCTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred CCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence 47899999999 58999999999999999999653
No 101
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=96.59 E-value=0.00071 Score=71.69 Aligned_cols=32 Identities=31% Similarity=0.656 Sum_probs=29.5
Q ss_pred CCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 230 ~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
..+|++..+++|++||.||.|+.|+|+.|+..
T Consensus 13 ~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~~ 44 (261)
T 1eg3_A 13 QGPWERAISPNKVPYYINHETQTTCWDHPKMT 44 (261)
T ss_dssp CTTEEEEECTTSCEEEEETTTTEEESSCHHHH
T ss_pred CCCcceeECCCCCeEeecCCcccccCCCCchh
Confidence 46899999999999999999999999999843
No 102
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=95.90 E-value=0.0061 Score=64.53 Aligned_cols=38 Identities=26% Similarity=0.540 Sum_probs=34.3
Q ss_pred ccCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHHHHH
Q 002862 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLA 305 (873)
Q Consensus 268 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~ 305 (873)
..++.+|++..+++|++||.|+.|++|+|+.|......
T Consensus 10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~~~~~ 47 (261)
T 1eg3_A 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELY 47 (261)
T ss_dssp TTCCTTEEEEECTTSCEEEEETTTTEEESSCHHHHHHH
T ss_pred CCCCCCcceeECCCCCeEeecCCcccccCCCCchhhhh
Confidence 46788999999999999999999999999999986644
No 103
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.0028 Score=72.01 Aligned_cols=33 Identities=24% Similarity=0.650 Sum_probs=30.2
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCcc
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
.+.+|++..|++||+||.||.|+.|||++|+..
T Consensus 9 lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~~ 41 (429)
T 3olm_A 9 LPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLP 41 (429)
T ss_dssp CCTTCCCCCSSCCCCCEEETTTTEEESSCTTSC
T ss_pred CCCCceeEECCCCCeEEEeCCCcceeccCCCCC
Confidence 357899999999999999999999999999864
No 104
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.057 Score=44.44 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHh-cCCC---CCCcHHHHHHHhhcCccccccCCh-HHHHHHHHHHH
Q 002862 479 LEAKNAFKALLES-ANVG---SDWTWDQALRAIINDRRYGALRTL-GERKTAFNEYL 530 (873)
Q Consensus 479 eeAk~aFk~LL~e-~~V~---s~~tWe~~~~~i~~DpRy~al~~~-~ERKqlFeeYl 530 (873)
|+.|.-|+-||.. ...+ --.+|+.+...|.+-|.|.+|.+. .-+|++|++|.
T Consensus 11 EqKK~yF~llL~Rvy~~~~k~kPe~WE~A~~~I~~~~Ey~~l~~E~~v~~qif~~F~ 67 (69)
T 2kfd_A 11 EQKKHYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDFK 67 (69)
T ss_dssp HHHHHHHHHHHHHHSCSSSSCCCSSHHHHHHHHTTSTTSGGGTTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccCCCCCccHHHHHHHHccCHHHHHhhccHHHHHHHHHhcC
Confidence 3456778888875 3333 334999999999999999999654 78999999983
No 105
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=93.75 E-value=0.023 Score=64.48 Aligned_cols=33 Identities=21% Similarity=0.486 Sum_probs=30.8
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (873)
.++.+|++.+|.+|++||.|+.|++|+|++|+.
T Consensus 8 ~lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~ 40 (429)
T 3olm_A 8 PLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRL 40 (429)
T ss_dssp CCCTTCCCCCSSCCCCCEEETTTTEEESSCTTS
T ss_pred CCCCCceeEECCCCCeEEEeCCCcceeccCCCC
Confidence 578999999999999999999999999999965
No 106
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=93.56 E-value=0.047 Score=54.35 Aligned_cols=33 Identities=27% Similarity=0.759 Sum_probs=29.2
Q ss_pred CCCCcEEEEcC-CCCceeecCCCcccccCCCCcc
Q 002862 229 VQTDWKEHTSA-DGRRYYFNKRTRVSTWDKPFEL 261 (873)
Q Consensus 229 ~~~~W~~~~~~-~Gr~YYyN~~T~~stWe~P~~~ 261 (873)
.+.+|+...+. .|+.||||..|++++|+.|...
T Consensus 8 lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~v 41 (177)
T 1yw5_A 8 LPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGT 41 (177)
T ss_dssp CCTTEEEEECSSTTCEEEEETTTCCEESSCCTTC
T ss_pred CCchHHHHhcccCCchhhhhHHHhhHhhcCcccC
Confidence 45799999996 5999999999999999999753
No 107
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=93.39 E-value=0.2 Score=41.65 Aligned_cols=57 Identities=19% Similarity=0.411 Sum_probs=48.1
Q ss_pred HHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhh---hcCChHHHHHHHHHHHHHHHH
Q 002862 546 KKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK---ALERERDRKDMFDDHLDELKQ 603 (873)
Q Consensus 546 kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfk---av~~e~eRe~lF~eyi~~L~k 603 (873)
..+.+.|..|+... .-++...|..+.+++...|.|. .|.....-+.+|+.||..|++
T Consensus 9 ~satd~~e~LIr~~-Vtd~~~~W~~~skkL~~~pE~~~yv~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 9 ATAKDKYEWLVSRI-VKNHNENWLSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp THHHHHHHHHHHHH-CSSSCSCHHHHHHHHTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhhHHHHhHHHHHHHhcCccHHHHHHHhChHHHHHHHHHHHHHhhc
Confidence 45788899998653 5678899999999999999987 566667889999999999985
No 108
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=92.26 E-value=0.098 Score=52.03 Aligned_cols=33 Identities=24% Similarity=0.575 Sum_probs=29.6
Q ss_pred cCCCCcEEEeCC-CCCeEEEeCCCCeeeccCChH
Q 002862 269 DASTDWKEFTSP-DGRKYYYNKVTKQSKWSLPDE 301 (873)
Q Consensus 269 ~~~~~W~e~~~~-~Gr~YyyN~~T~es~We~P~~ 301 (873)
.++.+|+...+. .|+.||||..|++++|+.|..
T Consensus 7 ~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~ 40 (177)
T 1yw5_A 7 GLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG 40 (177)
T ss_dssp CCCTTEEEEECSSTTCEEEEETTTCCEESSCCTT
T ss_pred CCCchHHHHhcccCCchhhhhHHHhhHhhcCccc
Confidence 478999999995 699999999999999999854
No 109
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=91.94 E-value=0.21 Score=41.13 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=41.0
Q ss_pred HHhHHHHHHHHHHHhhcCccCCCCChHHHHHHHhcCchhhhhhcCCCCCChHHHHHHHH
Q 002862 688 RKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVV 746 (873)
Q Consensus 688 Rk~Rd~F~~LL~E~~k~g~I~~~t~W~e~~~~ikdD~rf~~l~~~~~gS~~ldLF~d~v 746 (873)
...+.-|..||........-..-.+|+++.+.|++-+.|.+|. -..+...+||+++.
T Consensus 11 EqKK~yF~llL~Rvy~~~~k~kPe~WE~A~~~I~~~~Ey~~l~--~E~~v~~qif~~F~ 67 (69)
T 2kfd_A 11 EQKKHYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKALG--DEDNIRRQIFEDFK 67 (69)
T ss_dssp HHHHHHHHHHHHHHSCSSSSCCCSSHHHHHHHHTTSTTSGGGT--TSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccCCCCCccHHHHHHHHccCHHHHHhh--ccHHHHHHHHHhcC
Confidence 3456788988887653221122348999999999999999983 24467788998874
No 110
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=86.75 E-value=1.2 Score=37.10 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHhhcCcccc---ccCChHHHHHHHHHHHHHHHh
Q 002862 480 EAKNAFKALLESANVGSDWTWDQALRAIINDRRYG---ALRTLGERKTAFNEYLGQKKK 535 (873)
Q Consensus 480 eAk~aFk~LL~e~~V~s~~tWe~~~~~i~~DpRy~---al~~~~ERKqlFeeYl~~~~k 535 (873)
-|.+.|..|.+..--|...+|..+.++|...|.|. .|.....-+.+|...|..++.
T Consensus 10 satd~~e~LIr~~Vtd~~~~W~~~skkL~~~pE~~~yv~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 10 TAKDKYEWLVSRIVKNHNENWLSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp HHHHHHHHHHHHHCSSSCSCHHHHHHHHTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHhHHHHHHHhcCccHHHHHHHhChHHHHHHHHHHHHHhhc
Confidence 46788999988888899999999999999998776 566667788899999998875
No 111
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=85.07 E-value=1 Score=37.76 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=31.9
Q ss_pred cCCCCcEEEeCCCCCeEEEeCCCCeeeccCChHH
Q 002862 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302 (873)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 302 (873)
.++.+|......+|-+-|+|..|+..+|.+|-.+
T Consensus 28 ~LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY~l 61 (79)
T 3le4_A 28 PLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFL 61 (79)
T ss_dssp CCCTTEEEEECTTSSEEEEETTTTEEESSCCCCC
T ss_pred cCCCccEEEEecCCceEEEeccceEEeccCCeEe
Confidence 5899999999999999999999999999999765
No 112
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=64.28 E-value=5.2 Score=33.58 Aligned_cols=34 Identities=26% Similarity=0.626 Sum_probs=31.0
Q ss_pred CCCCcEEEEcCCCCceeecCCCcccccCCCCcch
Q 002862 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELM 262 (873)
Q Consensus 229 ~~~~W~~~~~~~Gr~YYyN~~T~~stWe~P~~~~ 262 (873)
...+|....-.+|=.-||+..|+..||.+|--+.
T Consensus 29 LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY~lG 62 (79)
T 3le4_A 29 LPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLG 62 (79)
T ss_dssp CCTTEEEEECTTSSEEEEETTTTEEESSCCCCCT
T ss_pred CCCccEEEEecCCceEEEeccceEEeccCCeEec
Confidence 3579999999999999999999999999998774
No 113
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=63.32 E-value=13 Score=36.68 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 002862 797 NLKLIFDDLLIKVKEKEE 814 (873)
Q Consensus 797 nlk~iFe~li~r~kEKe~ 814 (873)
..+++||.|.-+++|=++
T Consensus 126 e~RLiYDHYKlKvdELEK 143 (294)
T 3caz_A 126 KYRERYDHYKVKLDNLEK 143 (294)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHh
Confidence 358899999888765443
No 114
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=50.26 E-value=2.9e+02 Score=30.28 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcHHHHHHH
Q 002862 588 RDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDR 642 (873)
Q Consensus 588 ~eRe~lF~eyi~~L~kkeke~~~~~rk~~~~ef~~lL~~~~~It~~t~W~ev~~~ 642 (873)
.+|+..++.|+..+-.--. -..-..|..+|... ....|++..+.
T Consensus 116 e~Rr~~Le~fL~~i~~~p~-------l~~s~~~~~FL~~~----~~~~w~~~~r~ 159 (386)
T 4akv_A 116 EKRKRRLILWMDHMTSHPV-------LSQYEGFQHFLSCL----DDKQWKMGKRR 159 (386)
T ss_dssp THHHHHHHHHHHHHHTCTT-------GGGCHHHHHHHSCC----CSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHh-------hhCCcHHHHHhCCC----ChhhHHHhhhh
Confidence 4688888888887764210 01224577778643 24588877554
No 115
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=38.27 E-value=30 Score=25.91 Aligned_cols=17 Identities=53% Similarity=0.960 Sum_probs=11.7
Q ss_pred CChhhHHHHHHHHHHHH
Q 002862 652 LDKMDRLEIFQEYLNDL 668 (873)
Q Consensus 652 l~~~drl~lFed~i~~L 668 (873)
++++|-.++|.+|++.-
T Consensus 4 ~~kld~felfkey~k~r 20 (50)
T 3qf7_D 4 LDKLDYFELFKEYLKKR 20 (50)
T ss_dssp ---CCHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHH
Confidence 56788889999999753
No 116
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=35.69 E-value=4.4e+02 Score=28.43 Aligned_cols=51 Identities=6% Similarity=-0.105 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch--hhhhhccCCcccchHHHHhhcC
Q 002862 801 IFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKV--RYLQLLHGKIADNFWRVAKSSV 858 (873)
Q Consensus 801 iFe~li~r~kEKe~ee~rk~~r~~~~F~~lL~~~k~--It~~~~~~~~~d~~~~~~~~~~ 858 (873)
-|+.+.+.+++ |-.+-+++...+|+.+|.++-. |.| ....-..|..++..+
T Consensus 311 r~e~is~~~~~---El~rF~~~r~~Dfk~~l~~yl~~qi~~----~k~~~~~w~~~l~~~ 363 (366)
T 3dyt_A 311 RVSIMSYALQA---EMNHFHSNRIYDYNSVIRLYLEQQVQF----YETIAEKLRQALSRF 363 (366)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 35555555442 2234445666788888877543 333 122345576665544
No 117
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=35.27 E-value=5.9e+02 Score=29.58 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 002862 656 DRLEIFQEYLNDLEKEEEEQ 675 (873)
Q Consensus 656 drl~lFed~i~~Leke~ee~ 675 (873)
+....|+++|+.|....+++
T Consensus 519 ~~~~~~~e~~~ql~~kme~~ 538 (592)
T 1f5n_A 519 QKERSYQEHLKQLTEKMEND 538 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678889998886654443
No 118
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae}
Probab=33.84 E-value=13 Score=46.68 Aligned_cols=23 Identities=26% Similarity=0.788 Sum_probs=21.1
Q ss_pred CCCeEEEeCCCCeeeccCChHHH
Q 002862 281 DGRKYYYNKVTKQSKWSLPDELK 303 (873)
Q Consensus 281 ~Gr~YyyN~~T~es~We~P~~~~ 303 (873)
..|.|+||...|+|+|++|+.+.
T Consensus 944 ~eKLYH~N~~GGtsTW~LP~~w~ 966 (1531)
T 3ecq_A 944 KEKMYYFNTQAGATTWTLPSDWA 966 (1531)
T ss_dssp GCEEEEEESSCSEEEEECCHHHH
T ss_pred ccceEEEcCCCCeEeeECCCccc
Confidence 46899999999999999999876
No 119
>1zxh_A Immunoglobulin G binding protein G; IGG-binding, phage display, immune system/protein binding complex; NMR {Streptococcus SP}
Probab=32.02 E-value=7.2 Score=30.83 Aligned_cols=26 Identities=38% Similarity=0.579 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcHHHH
Q 002862 478 KLEAKNAFKALLESANVGSDWTWDQA 503 (873)
Q Consensus 478 keeAk~aFk~LL~e~~V~s~~tWe~~ 503 (873)
-|+|+..|++-|++.++++-|+++.+
T Consensus 23 ~e~a~n~F~Qy~ndng~dg~w~yd~a 48 (56)
T 1zxh_A 23 AETARNAFIQSLKDDGVQGVWTYDDA 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHTTSEECCCTT
T ss_pred HHHHHHHHHHHHhcCCccceeecccc
Confidence 46899999999999999999987654
No 120
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.69 E-value=3.3e+02 Score=29.83 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002862 588 RDRKDMFDDHLDELKQKERAKAQEE 612 (873)
Q Consensus 588 ~eRe~lF~eyi~~L~kkeke~~~~~ 612 (873)
.+-+.+|.+|..+|+++...-+++.
T Consensus 105 ~dndn~~~e~s~eLe~~i~~lk~~V 129 (390)
T 1deq_A 105 NNNDNTFKQINEDLRSRIEILRRKV 129 (390)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999998765544433
No 121
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=30.59 E-value=31 Score=36.57 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=31.3
Q ss_pred CCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccC
Q 002862 240 DGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSL 298 (873)
Q Consensus 240 ~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~ 298 (873)
+|.+|.||..|++..|..+..............+-.-+.+.+|..|.+|..||+..|..
T Consensus 286 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 286 NDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp TCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 45555556566655555431100000000011122233456789999999999999974
No 122
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Probab=27.72 E-value=15 Score=46.71 Aligned_cols=24 Identities=29% Similarity=0.677 Sum_probs=21.4
Q ss_pred CCCCeEEEeCCCCeeeccCChHHH
Q 002862 280 PDGRKYYYNKVTKQSKWSLPDELK 303 (873)
Q Consensus 280 ~~Gr~YyyN~~T~es~We~P~~~~ 303 (873)
.+.|.|+||...|+|+|++|+.+.
T Consensus 705 ~~~KlYh~N~~gG~stW~Lp~~w~ 728 (1376)
T 2zxq_A 705 SEQKLYHWNTKGGTTTWTLPDSWK 728 (1376)
T ss_dssp GGCEEEEEESSCEEEEEECCGGGT
T ss_pred CcceeEEEeCCCCeeeEECCcccC
Confidence 357899999999999999999875
No 123
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=25.10 E-value=2.8e+02 Score=27.83 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHhhcCccCCCCChHHHHHHHhcCchhhhhhcC
Q 002862 654 KMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFR-KLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASN 732 (873)
Q Consensus 654 ~~drl~lFed~i~~Leke~ee~kr~~k~~~rR~eRk~Rd~F~-~LL~E~~k~g~I~~~t~W~e~~~~ikdD~rf~~l~~~ 732 (873)
+.|+|++|.+||+=++..+-... ......+. .||+.+++... + ....++|+||+.+.
T Consensus 26 ~dDPL~~w~~YIkW~ee~yP~g~-----------~~~~s~L~~~lLErc~~~F~--------~-~~rYkND~RYLklW-- 83 (202)
T 3esl_A 26 MDDPLDLFLDYMIWISTSYIEVD-----------SESGQEVLRSTMERCLIYIQ--------D-METYRNDPRFLKIW-- 83 (202)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHHHHHT--------T-CGGGTTCHHHHHHH--
T ss_pred CCCchHHHHHHHHHHHHhCCCCC-----------CcchhchHHHHHHHHHHHhc--------c-cccccCCHHHHHHH--
Confidence 45899999999987754432210 00112334 67777654210 0 12346667766553
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCHHHHHHHhhhcCCC
Q 002862 733 TSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATS 790 (873)
Q Consensus 733 ~~gS~~ldLF~d~veeL~k~~~e~k~~i~d~Lk~~~i~~~s~wt~ee~~~~l~ed~r~ 790 (873)
-.+++-.......+-..+-..|..++|-....-=++++..++....+|
T Consensus 84 ----------l~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~ 131 (202)
T 3esl_A 84 ----------IWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFF 131 (202)
T ss_dssp ----------HHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCH
T ss_pred ----------HHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCH
Confidence 333332100000122234444555565544332246777777665443
No 124
>3hia_A Choline binding protein; beta hairpin; 2.38A {Streptococcus pneumoniae}
Probab=23.87 E-value=52 Score=28.74 Aligned_cols=20 Identities=30% Similarity=0.767 Sum_probs=13.3
Q ss_pred CCCCCCcEEEEcCCCCceeecCC
Q 002862 227 EGVQTDWKEHTSADGRRYYFNKR 249 (873)
Q Consensus 227 ~~~~~~W~~~~~~~Gr~YYyN~~ 249 (873)
.....+|... +|.-||+|..
T Consensus 12 ~~~~~~W~~~---~g~WYy~~~~ 31 (94)
T 3hia_A 12 VAPTTGWKQE---NGMWYFYNTD 31 (94)
T ss_dssp --CCCEEEEE---TTEEEEECTT
T ss_pred ccccCCeEEE---CCEEEEECCC
Confidence 3456789873 6888998853
No 125
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=21.92 E-value=50 Score=34.94 Aligned_cols=59 Identities=8% Similarity=0.134 Sum_probs=41.5
Q ss_pred cCCCCceeecCCCcccccCCCCcchhhhhhccCCCCcEEEeCCCCCeEEEeCCCCeeeccCC
Q 002862 238 SADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLP 299 (873)
Q Consensus 238 ~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P 299 (873)
+.+|.+|.||..|++..|..+...... .....+-.=+.+.+|..|-++..||+..|..+
T Consensus 246 ~~~g~l~~~d~~tG~~~w~~~~~~~~~---~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 246 AYNGNLTALDLRSGQIMWKRELGSVND---FIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp CTTSCEEEEETTTCCEEEEECCCCEEE---EEEETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred ecCcEEEEEECCCCcEEeeccCCCCCC---ceEECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 458999999999999999876432110 01112223334568999999999999999865
No 126
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=21.57 E-value=65 Score=34.94 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=45.5
Q ss_pred CCCcEEE-----EcCCCCceeecCCCcccccCCCCcchhh-hh---hccCCCCcEEEe--CCCCCeEEEeCCCCeeeccC
Q 002862 230 QTDWKEH-----TSADGRRYYFNKRTRVSTWDKPFELMTT-IE---RADASTDWKEFT--SPDGRKYYYNKVTKQSKWSL 298 (873)
Q Consensus 230 ~~~W~~~-----~~~~Gr~YYyN~~T~~stWe~P~~~~~~-~e---~~~~~~~W~e~~--~~~Gr~YyyN~~T~es~We~ 298 (873)
..+|+.- -+.||++|=+|..||+-.|.-......+ .. ......+..-+. +.+|+.|.++..+|.-.|..
T Consensus 4 l~~~~~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 4 LNELSLSDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp TTSSEEEEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred HHHceeCCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 3467643 3679999999999999999865541011 10 011112344445 46999999999999888854
No 127
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=21.35 E-value=5.9e+02 Score=25.04 Aligned_cols=36 Identities=8% Similarity=0.272 Sum_probs=21.6
Q ss_pred HHHHHHHH---hHHHHHHHHHHHhhcCccCCCCChHHHHHHHh
Q 002862 682 ELSKTERK---NRDEFRKLMEADVALGTLTAKTNWRDYCIKVK 721 (873)
Q Consensus 682 ~~rR~eRk---~Rd~F~~LL~E~~k~g~I~~~t~W~e~~~~ik 721 (873)
.++|.++| +--+|+..+.|++. +.++-|...+.+|-
T Consensus 150 KI~RNQsKLssAEtaYkqvcsDiIn----kMnkll~n~~riin 188 (294)
T 3caz_A 150 RIERNQQKFKDAEAAYSSVCADLIQ----KMETVWKKHVSIFA 188 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHhHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34555555 45678888887752 22445776666653
No 128
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=20.64 E-value=5.4e+02 Score=25.82 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhcccCCCcccHHHHHHHhcCChhhhhcCChHHHHHHHHHHHH
Q 002862 520 GERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLD 599 (873)
Q Consensus 520 ~ERKqlFeeYl~~~~k~E~eekr~~~kkare~F~~lLee~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lF~eyi~ 599 (873)
.||++-+-+-++...++.+..-|..++.+.+.++++.++. +|+ .|...++ +.+...+-.+||.
T Consensus 131 eErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~-~is-------------EDe~k~~---e~eiQklTd~~i~ 193 (209)
T 4gfq_A 131 EERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAG-EIT-------------EDDLRGY---TEDIQKETDKYIA 193 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSC-------------HHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCC-------------HHHHHHH---HHHHHHHHHHHHH
Confidence 6888887777777776666666777788888888888752 343 2222222 2467888888988
Q ss_pred HHHHHHHH
Q 002862 600 ELKQKERA 607 (873)
Q Consensus 600 ~L~kkeke 607 (873)
.+.+--+.
T Consensus 194 ~iD~~l~~ 201 (209)
T 4gfq_A 194 KVDEIAKN 201 (209)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88765443
No 129
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.42 E-value=3.2e+02 Score=24.81 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=14.2
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 002862 736 STPKDLFEDVVEELQKQFQ 754 (873)
Q Consensus 736 S~~ldLF~d~veeL~k~~~ 754 (873)
|....+|+..|.+|++++.
T Consensus 12 ~~~~~~ye~~I~~LR~qid 30 (119)
T 3ol1_A 12 SRLGDLYEEEMRELRRQVD 30 (119)
T ss_dssp -CCTHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 4556789999999977653
Done!