Query 002863
Match_columns 873
No_of_seqs 781 out of 4554
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 12:19:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1E-100 3E-105 890.6 47.4 832 11-864 5-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.4E-63 9.5E-68 610.7 52.4 623 144-834 184-914 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.7E-46 1.2E-50 394.4 18.2 282 149-433 1-286 (287)
4 KOG4194 Membrane glycoprotein 99.9 3.7E-26 8.1E-31 239.0 5.2 334 486-852 106-462 (873)
5 PLN00113 leucine-rich repeat r 99.9 2E-23 4.3E-28 259.4 17.5 336 484-836 95-464 (968)
6 KOG4194 Membrane glycoprotein 99.9 1.9E-24 4.2E-29 226.2 5.3 318 487-835 83-427 (873)
7 PLN00113 leucine-rich repeat r 99.9 5.8E-23 1.3E-27 255.3 17.4 332 484-836 120-487 (968)
8 KOG0444 Cytoskeletal regulator 99.9 1.8E-25 3.9E-30 235.1 -4.3 328 484-830 34-379 (1255)
9 KOG0444 Cytoskeletal regulator 99.9 1.9E-23 4.1E-28 220.0 -4.2 300 501-835 29-350 (1255)
10 PLN03210 Resistant to P. syrin 99.8 8.9E-19 1.9E-23 217.6 20.5 304 484-828 591-945 (1153)
11 KOG0472 Leucine-rich repeat pr 99.7 2.5E-20 5.3E-25 187.5 -8.1 243 499-765 63-310 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 1.7E-19 3.6E-24 181.6 -6.8 304 498-823 200-538 (565)
13 PRK15387 E3 ubiquitin-protein 99.7 3.7E-16 8.1E-21 179.7 16.5 259 479-800 198-456 (788)
14 KOG0618 Serine/threonine phosp 99.6 9.5E-18 2.1E-22 186.1 -3.2 264 525-824 218-487 (1081)
15 PRK15370 E3 ubiquitin-protein 99.6 2.3E-15 5E-20 174.6 10.4 239 485-764 181-427 (754)
16 KOG0618 Serine/threonine phosp 99.6 9.8E-17 2.1E-21 178.2 -4.0 266 504-801 219-488 (1081)
17 PRK15370 E3 ubiquitin-protein 99.5 1.1E-14 2.3E-19 169.1 9.8 245 505-800 179-426 (754)
18 KOG4237 Extracellular matrix p 99.5 4.8E-16 1E-20 156.9 -2.3 263 485-766 49-336 (498)
19 PRK15387 E3 ubiquitin-protein 99.5 4.5E-14 9.7E-19 162.8 12.9 236 485-768 225-461 (788)
20 KOG0617 Ras suppressor protein 99.4 3.9E-15 8.4E-20 133.0 -5.4 151 496-653 25-181 (264)
21 KOG4237 Extracellular matrix p 99.4 8E-15 1.7E-19 148.1 -4.0 281 512-820 54-353 (498)
22 KOG4658 Apoptotic ATPase [Sign 99.3 9.7E-13 2.1E-17 155.3 7.6 330 485-849 526-878 (889)
23 PRK04841 transcriptional regul 99.3 4.7E-11 1E-15 148.1 22.9 291 143-476 13-332 (903)
24 KOG0617 Ras suppressor protein 99.3 3.1E-14 6.8E-19 127.3 -3.8 150 488-644 39-195 (264)
25 PRK00411 cdc6 cell division co 99.3 3.1E-10 6.8E-15 126.1 25.3 297 142-457 28-358 (394)
26 cd00116 LRR_RI Leucine-rich re 99.3 7.1E-13 1.5E-17 143.3 3.2 86 673-764 166-262 (319)
27 cd00116 LRR_RI Leucine-rich re 99.3 2.5E-12 5.5E-17 139.0 5.1 235 526-767 23-293 (319)
28 TIGR03015 pepcterm_ATPase puta 99.2 1.4E-09 3.1E-14 114.1 23.6 182 163-352 41-242 (269)
29 TIGR02928 orc1/cdc6 family rep 99.2 4.8E-09 1E-13 115.3 26.8 297 143-457 14-350 (365)
30 PF01637 Arch_ATPase: Archaeal 99.2 4.9E-11 1.1E-15 122.5 9.9 195 146-347 1-233 (234)
31 PRK00080 ruvB Holliday junctio 99.1 1.5E-09 3.2E-14 116.7 15.1 273 144-457 25-310 (328)
32 TIGR00635 ruvB Holliday juncti 99.1 8.9E-09 1.9E-13 110.0 19.9 273 144-457 4-289 (305)
33 COG2909 MalT ATP-dependent tra 99.0 9.7E-09 2.1E-13 115.3 17.4 290 144-475 19-337 (894)
34 PF14580 LRR_9: Leucine-rich r 99.0 5E-10 1.1E-14 106.0 4.8 124 500-628 15-148 (175)
35 PF05729 NACHT: NACHT domain 98.9 5.3E-09 1.1E-13 100.9 11.3 142 166-316 1-163 (166)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.3E-14 103.9 5.3 120 484-605 21-150 (175)
37 KOG0532 Leucine-rich repeat (L 98.9 1.4E-10 2.9E-15 123.3 -2.4 167 526-706 75-244 (722)
38 KOG1259 Nischarin, modulator o 98.8 7.5E-10 1.6E-14 108.4 0.8 130 642-800 281-410 (490)
39 PRK06893 DNA replication initi 98.8 3.3E-08 7.1E-13 100.1 12.7 153 164-349 38-204 (229)
40 KOG3207 Beta-tubulin folding c 98.8 5.7E-10 1.2E-14 115.2 -1.4 155 501-656 118-282 (505)
41 PTZ00112 origin recognition co 98.8 7.7E-07 1.7E-11 101.1 22.3 295 143-457 754-1086(1164)
42 KOG3207 Beta-tubulin folding c 98.8 1.7E-09 3.6E-14 111.8 1.2 209 523-766 118-340 (505)
43 COG2256 MGS1 ATPase related to 98.8 4.8E-07 1E-11 93.6 18.4 219 145-396 31-266 (436)
44 KOG1909 Ran GTPase-activating 98.7 1.2E-09 2.7E-14 109.8 -0.9 36 570-605 90-130 (382)
45 PRK13342 recombination factor 98.7 3.4E-07 7.3E-12 101.5 17.1 175 144-349 12-197 (413)
46 COG4886 Leucine-rich repeat (L 98.7 1.3E-08 2.9E-13 113.1 5.8 175 549-766 113-291 (394)
47 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.2E-07 2.5E-12 96.7 12.2 169 149-350 22-203 (226)
48 COG3899 Predicted ATPase [Gene 98.7 1.8E-07 3.9E-12 111.6 15.3 288 146-455 2-355 (849)
49 KOG4341 F-box protein containi 98.7 9.1E-10 2E-14 113.1 -4.0 277 526-847 138-438 (483)
50 PRK07003 DNA polymerase III su 98.7 1.2E-06 2.7E-11 99.1 19.5 185 144-352 16-225 (830)
51 PRK04195 replication factor C 98.7 1.5E-06 3.3E-11 98.3 20.4 174 144-347 14-201 (482)
52 KOG1259 Nischarin, modulator o 98.6 6.3E-09 1.4E-13 102.0 0.2 99 526-630 284-384 (490)
53 KOG1909 Ran GTPase-activating 98.6 1.2E-08 2.7E-13 102.7 1.0 83 548-631 26-131 (382)
54 COG1474 CDC6 Cdc6-related prot 98.6 3.4E-06 7.4E-11 90.5 19.5 204 143-350 16-240 (366)
55 PF13173 AAA_14: AAA domain 98.6 1.4E-07 3.1E-12 86.0 6.9 119 165-307 2-126 (128)
56 PRK05564 DNA polymerase III su 98.5 1.7E-06 3.7E-11 92.4 15.5 177 144-347 4-189 (313)
57 PRK12402 replication factor C 98.5 2E-06 4.3E-11 93.6 16.2 193 144-346 15-224 (337)
58 PRK08727 hypothetical protein; 98.5 1.5E-06 3.2E-11 88.2 14.0 167 146-345 22-201 (233)
59 KOG2120 SCF ubiquitin ligase, 98.5 6.4E-09 1.4E-13 102.1 -3.2 61 728-800 311-374 (419)
60 cd01128 rho_factor Transcripti 98.5 2.1E-07 4.6E-12 94.1 7.1 93 163-258 14-114 (249)
61 COG4886 Leucine-rich repeat (L 98.5 1.2E-07 2.6E-12 105.6 5.8 186 509-707 98-288 (394)
62 KOG0532 Leucine-rich repeat (L 98.5 7.4E-09 1.6E-13 110.4 -3.7 210 530-762 54-270 (722)
63 TIGR02903 spore_lon_C ATP-depe 98.5 4.8E-06 1.1E-10 96.2 18.4 202 144-351 154-398 (615)
64 PRK14960 DNA polymerase III su 98.5 7.8E-06 1.7E-10 91.9 19.1 190 144-346 15-217 (702)
65 KOG2028 ATPase related to the 98.5 2E-06 4.3E-11 87.1 12.7 161 156-342 153-330 (554)
66 PF05496 RuvB_N: Holliday junc 98.5 2.2E-06 4.8E-11 83.0 12.4 176 144-353 24-226 (233)
67 PRK00440 rfc replication facto 98.4 5.3E-06 1.1E-10 89.5 16.6 178 144-345 17-200 (319)
68 PLN03025 replication factor C 98.4 2.9E-06 6.2E-11 90.9 14.3 178 144-343 13-195 (319)
69 PRK14949 DNA polymerase III su 98.4 3.2E-06 6.8E-11 97.9 15.2 179 144-346 16-218 (944)
70 PTZ00202 tuzin; Provisional 98.4 4E-06 8.7E-11 88.5 14.2 161 141-316 259-434 (550)
71 PRK14961 DNA polymerase III su 98.4 6.7E-06 1.4E-10 89.5 16.8 189 144-345 16-217 (363)
72 PF13401 AAA_22: AAA domain; P 98.4 5.5E-07 1.2E-11 82.8 7.2 117 164-285 3-125 (131)
73 PF13855 LRR_8: Leucine rich r 98.4 1.8E-07 3.9E-12 72.6 3.3 58 572-630 1-59 (61)
74 cd00009 AAA The AAA+ (ATPases 98.4 1.4E-06 3E-11 82.0 10.1 124 147-287 1-131 (151)
75 PRK14963 DNA polymerase III su 98.4 5.6E-06 1.2E-10 93.0 16.3 199 144-353 14-223 (504)
76 PF13855 LRR_8: Leucine rich r 98.4 2.5E-07 5.5E-12 71.8 3.8 56 526-583 1-60 (61)
77 KOG4341 F-box protein containi 98.4 1.6E-08 3.5E-13 104.1 -3.9 145 505-653 139-302 (483)
78 PRK14962 DNA polymerase III su 98.4 6.6E-06 1.4E-10 91.6 16.3 186 144-353 14-224 (472)
79 PRK12323 DNA polymerase III su 98.4 4.7E-06 1E-10 93.4 14.8 193 144-348 16-225 (700)
80 PRK08084 DNA replication initi 98.4 4E-06 8.8E-11 85.1 12.8 171 144-347 23-208 (235)
81 PRK13341 recombination factor 98.3 3.5E-06 7.6E-11 98.2 12.5 168 144-342 28-211 (725)
82 PRK09087 hypothetical protein; 98.3 6.1E-06 1.3E-10 82.9 12.6 142 164-347 43-194 (226)
83 KOG2120 SCF ubiquitin ligase, 98.3 3E-08 6.4E-13 97.5 -4.0 54 526-580 185-242 (419)
84 PRK09376 rho transcription ter 98.3 1.3E-06 2.7E-11 92.0 7.4 99 156-258 159-267 (416)
85 KOG0531 Protein phosphatase 1, 98.3 8.6E-08 1.9E-12 106.8 -1.3 119 505-629 73-195 (414)
86 PRK14956 DNA polymerase III su 98.3 1E-05 2.2E-10 88.4 14.6 187 144-343 18-217 (484)
87 PRK14957 DNA polymerase III su 98.3 1.3E-05 2.8E-10 90.1 15.9 185 144-352 16-225 (546)
88 PF13191 AAA_16: AAA ATPase do 98.3 1.5E-06 3.3E-11 85.4 7.5 44 146-189 2-48 (185)
89 PRK06645 DNA polymerase III su 98.3 1.9E-05 4.1E-10 88.2 16.5 193 144-345 21-226 (507)
90 PRK05642 DNA replication initi 98.3 1E-05 2.2E-10 82.1 13.1 150 166-348 46-208 (234)
91 PRK08691 DNA polymerase III su 98.3 1.1E-05 2.3E-10 91.7 14.2 179 144-346 16-218 (709)
92 KOG0531 Protein phosphatase 1, 98.2 1.6E-07 3.5E-12 104.5 -0.6 100 524-630 70-172 (414)
93 PF00308 Bac_DnaA: Bacterial d 98.2 1.2E-05 2.6E-10 80.5 12.6 180 144-345 9-205 (219)
94 TIGR02397 dnaX_nterm DNA polym 98.2 3.3E-05 7.2E-10 84.6 17.3 181 144-348 14-218 (355)
95 PRK07471 DNA polymerase III su 98.2 3.1E-05 6.8E-10 83.4 16.6 194 144-349 19-239 (365)
96 TIGR01242 26Sp45 26S proteasom 98.2 3.2E-06 7E-11 92.3 9.0 171 144-342 122-328 (364)
97 KOG0989 Replication factor C, 98.2 6.5E-06 1.4E-10 82.2 10.1 189 144-350 36-233 (346)
98 KOG2982 Uncharacterized conser 98.2 4.8E-07 1E-11 89.1 1.6 83 523-605 68-156 (418)
99 PRK14951 DNA polymerase III su 98.2 3.1E-05 6.7E-10 88.3 16.3 192 144-347 16-224 (618)
100 PRK05896 DNA polymerase III su 98.2 2.4E-05 5.2E-10 88.0 14.9 194 144-350 16-223 (605)
101 PRK14959 DNA polymerase III su 98.2 7.2E-05 1.6E-09 84.7 18.6 197 144-353 16-226 (624)
102 PLN03150 hypothetical protein; 98.2 3.5E-06 7.7E-11 98.3 8.6 97 554-652 420-522 (623)
103 TIGR00678 holB DNA polymerase 98.2 4E-05 8.7E-10 75.3 14.8 159 155-344 3-187 (188)
104 PRK08903 DnaA regulatory inact 98.2 1.7E-05 3.7E-10 80.6 12.5 169 147-352 22-203 (227)
105 PRK14958 DNA polymerase III su 98.2 2.7E-05 5.8E-10 87.8 15.0 179 144-346 16-218 (509)
106 PRK14964 DNA polymerase III su 98.2 3.6E-05 7.9E-10 85.3 15.7 178 144-344 13-213 (491)
107 PRK07994 DNA polymerase III su 98.2 1.9E-05 4.1E-10 90.2 13.8 191 144-347 16-219 (647)
108 PRK07940 DNA polymerase III su 98.2 3.5E-05 7.6E-10 83.7 15.3 172 144-348 5-213 (394)
109 PRK09112 DNA polymerase III su 98.2 2.3E-05 5E-10 83.9 13.7 196 144-349 23-241 (351)
110 TIGR00767 rho transcription te 98.1 7.8E-06 1.7E-10 86.7 9.3 94 163-258 166-266 (415)
111 PRK14955 DNA polymerase III su 98.1 2.8E-05 6E-10 85.7 13.7 200 144-349 16-230 (397)
112 KOG2982 Uncharacterized conser 98.1 3E-07 6.5E-12 90.6 -1.6 100 527-630 46-156 (418)
113 PRK09111 DNA polymerase III su 98.1 4.3E-05 9.3E-10 87.4 15.3 194 144-347 24-232 (598)
114 PRK14970 DNA polymerase III su 98.1 5.3E-05 1.2E-09 83.1 15.1 185 144-351 17-213 (367)
115 COG3903 Predicted ATPase [Gene 98.1 3.4E-06 7.4E-11 88.2 5.1 237 164-415 13-258 (414)
116 PRK14969 DNA polymerase III su 98.1 5.5E-05 1.2E-09 85.9 15.0 185 144-352 16-225 (527)
117 PF12799 LRR_4: Leucine Rich r 98.1 4.8E-06 1E-10 59.0 3.8 41 572-613 1-41 (44)
118 PRK14087 dnaA chromosomal repl 98.1 3.1E-05 6.8E-10 86.1 12.3 166 166-349 142-320 (450)
119 PLN03150 hypothetical protein; 98.0 8.3E-06 1.8E-10 95.2 7.8 76 528-605 420-500 (623)
120 PRK11331 5-methylcytosine-spec 98.0 4.4E-05 9.6E-10 82.5 11.8 108 144-259 175-284 (459)
121 PF14516 AAA_35: AAA-like doma 98.0 0.0016 3.5E-08 69.9 23.8 202 143-355 10-246 (331)
122 PRK14952 DNA polymerase III su 98.0 0.00012 2.7E-09 83.2 16.0 197 144-353 13-225 (584)
123 PRK14954 DNA polymerase III su 98.0 0.00013 2.9E-09 83.5 16.3 200 144-349 16-230 (620)
124 PRK07764 DNA polymerase III su 98.0 0.00011 2.5E-09 86.9 15.9 179 144-352 15-226 (824)
125 TIGR02881 spore_V_K stage V sp 98.0 6.1E-05 1.3E-09 78.1 12.3 155 145-319 7-194 (261)
126 PRK08451 DNA polymerase III su 98.0 0.00017 3.6E-09 80.9 16.3 181 144-348 14-218 (535)
127 PRK14971 DNA polymerase III su 98.0 0.00016 3.5E-09 83.4 16.6 181 144-348 17-223 (614)
128 PRK14950 DNA polymerase III su 98.0 0.00019 4.1E-09 83.1 17.3 193 144-348 16-221 (585)
129 PRK03992 proteasome-activating 98.0 3.3E-05 7.2E-10 84.7 10.5 170 144-341 131-336 (389)
130 KOG1859 Leucine-rich repeat pr 98.0 2.5E-07 5.4E-12 101.6 -6.3 21 499-519 104-124 (1096)
131 PRK06305 DNA polymerase III su 98.0 0.00019 4.1E-09 80.0 16.2 183 144-350 17-225 (451)
132 CHL00181 cbbX CbbX; Provisiona 97.9 0.00014 3E-09 75.9 14.1 155 145-319 24-212 (287)
133 TIGR00362 DnaA chromosomal rep 97.9 0.00017 3.7E-09 80.1 15.6 157 166-344 137-306 (405)
134 PRK15386 type III secretion pr 97.9 3.3E-05 7.1E-10 82.5 9.2 63 548-613 48-112 (426)
135 PRK07133 DNA polymerase III su 97.9 0.00021 4.5E-09 82.4 16.0 189 144-350 18-222 (725)
136 COG2255 RuvB Holliday junction 97.9 0.00048 1E-08 68.4 16.1 173 144-352 26-227 (332)
137 PRK14088 dnaA chromosomal repl 97.9 8.5E-05 1.8E-09 82.7 12.3 157 165-343 130-300 (440)
138 PRK14953 DNA polymerase III su 97.9 0.00022 4.9E-09 79.9 15.7 177 144-348 16-220 (486)
139 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00017 3.8E-09 86.5 15.3 179 144-341 187-389 (852)
140 TIGR02880 cbbX_cfxQ probable R 97.9 0.0002 4.2E-09 74.9 14.0 132 167-318 60-210 (284)
141 KOG2227 Pre-initiation complex 97.9 0.00057 1.2E-08 72.6 16.9 203 143-352 149-376 (529)
142 PRK00149 dnaA chromosomal repl 97.8 0.00012 2.6E-09 82.4 12.5 157 166-344 149-318 (450)
143 PRK06620 hypothetical protein; 97.8 9.6E-05 2.1E-09 73.6 10.3 132 166-342 45-183 (214)
144 PRK14948 DNA polymerase III su 97.8 0.00048 1E-08 79.5 17.2 193 144-347 16-221 (620)
145 PTZ00361 26 proteosome regulat 97.8 0.00015 3.2E-09 79.6 12.3 169 145-341 184-388 (438)
146 PTZ00454 26S protease regulato 97.8 0.00015 3.3E-09 79.1 12.0 170 144-341 145-350 (398)
147 KOG1859 Leucine-rich repeat pr 97.8 6.9E-07 1.5E-11 98.2 -6.1 121 502-630 162-289 (1096)
148 PRK12422 chromosomal replicati 97.8 0.00031 6.7E-09 78.0 14.3 152 166-341 142-306 (445)
149 KOG2543 Origin recognition com 97.8 0.00017 3.7E-09 74.5 10.8 167 143-315 5-192 (438)
150 PF05621 TniB: Bacterial TniB 97.8 0.0011 2.4E-08 67.8 16.3 190 153-346 46-259 (302)
151 KOG1644 U2-associated snRNP A' 97.7 4.6E-05 9.9E-10 71.6 5.5 80 505-586 43-127 (233)
152 PRK06647 DNA polymerase III su 97.7 0.00078 1.7E-08 76.9 16.6 190 144-346 16-218 (563)
153 KOG4579 Leucine-rich repeat (L 97.7 5.5E-06 1.2E-10 72.4 -0.6 104 508-614 31-141 (177)
154 TIGR02639 ClpA ATP-dependent C 97.7 0.00021 4.6E-09 85.2 12.5 155 144-316 182-358 (731)
155 PHA02544 44 clamp loader, smal 97.7 0.00018 3.9E-09 77.3 10.8 145 144-314 21-171 (316)
156 PRK14965 DNA polymerase III su 97.7 0.0005 1.1E-08 79.2 14.9 196 144-352 16-225 (576)
157 PRK14086 dnaA chromosomal repl 97.7 0.001 2.2E-08 75.2 16.7 155 166-342 315-482 (617)
158 PRK07399 DNA polymerase III su 97.7 0.0035 7.5E-08 66.4 19.8 195 145-348 5-221 (314)
159 PRK10536 hypothetical protein; 97.7 0.00022 4.9E-09 71.3 9.7 134 145-286 56-213 (262)
160 PRK05563 DNA polymerase III su 97.6 0.0015 3.2E-08 75.0 16.6 189 144-345 16-217 (559)
161 CHL00095 clpC Clp protease ATP 97.6 0.00021 4.6E-09 86.2 10.2 154 144-315 179-353 (821)
162 PRK05707 DNA polymerase III su 97.6 0.0012 2.6E-08 70.2 14.2 95 246-348 105-203 (328)
163 PF05673 DUF815: Protein of un 97.6 0.0028 6E-08 62.8 15.3 46 144-189 27-76 (249)
164 TIGR01241 FtsH_fam ATP-depende 97.5 0.0018 3.9E-08 73.9 16.2 171 144-341 55-259 (495)
165 TIGR03689 pup_AAA proteasome A 97.5 0.00063 1.4E-08 75.9 12.1 158 144-318 182-380 (512)
166 PF12799 LRR_4: Leucine Rich r 97.5 6.5E-05 1.4E-09 53.2 2.8 36 553-588 2-40 (44)
167 PRK11034 clpA ATP-dependent Cl 97.5 0.00055 1.2E-08 80.6 11.7 155 145-316 187-362 (758)
168 KOG3665 ZYG-1-like serine/thre 97.5 6.3E-05 1.4E-09 87.6 3.9 126 504-630 122-260 (699)
169 COG0593 DnaA ATPase involved i 97.5 0.00087 1.9E-08 72.0 12.1 141 164-324 112-265 (408)
170 COG5238 RNA1 Ran GTPase-activa 97.5 2.5E-05 5.4E-10 76.4 0.4 37 525-561 29-67 (388)
171 PRK10865 protein disaggregatio 97.5 0.00067 1.5E-08 81.9 12.6 155 144-316 178-354 (857)
172 COG5238 RNA1 Ran GTPase-activa 97.5 2.4E-05 5.3E-10 76.4 0.1 68 729-803 241-316 (388)
173 smart00382 AAA ATPases associa 97.5 0.00035 7.7E-09 64.9 8.0 89 166-261 3-92 (148)
174 PRK08116 hypothetical protein; 97.5 0.00016 3.5E-09 74.7 6.0 102 166-285 115-220 (268)
175 COG3267 ExeA Type II secretory 97.5 0.0049 1.1E-07 60.8 15.7 184 162-350 48-247 (269)
176 PF04665 Pox_A32: Poxvirus A32 97.5 0.00039 8.4E-09 69.3 8.3 37 166-205 14-50 (241)
177 PRK08118 topology modulation p 97.5 8.1E-05 1.7E-09 71.1 3.2 35 167-201 3-37 (167)
178 COG1373 Predicted ATPase (AAA+ 97.5 0.0017 3.7E-08 71.3 13.8 134 149-311 22-162 (398)
179 TIGR03346 chaperone_ClpB ATP-d 97.4 0.001 2.2E-08 80.8 13.1 155 145-316 174-349 (852)
180 COG1222 RPT1 ATP-dependent 26S 97.4 0.004 8.6E-08 64.2 14.5 180 146-353 153-372 (406)
181 TIGR00602 rad24 checkpoint pro 97.4 0.00063 1.4E-08 78.0 9.9 46 144-189 84-134 (637)
182 KOG3665 ZYG-1-like serine/thre 97.4 6.9E-05 1.5E-09 87.2 1.8 100 526-629 122-229 (699)
183 KOG1644 U2-associated snRNP A' 97.3 0.00021 4.6E-09 67.2 4.4 76 553-629 43-122 (233)
184 CHL00176 ftsH cell division pr 97.3 0.0047 1E-07 71.6 15.6 170 144-340 183-386 (638)
185 PF10443 RNA12: RNA12 protein; 97.3 0.012 2.6E-07 63.1 17.3 199 149-359 1-289 (431)
186 PRK07261 topology modulation p 97.3 0.00062 1.3E-08 65.4 7.2 66 167-257 2-67 (171)
187 KOG0991 Replication factor C, 97.3 0.00065 1.4E-08 65.1 6.6 98 144-259 27-125 (333)
188 PRK12377 putative replication 97.3 0.00079 1.7E-08 68.3 7.7 75 164-258 100-174 (248)
189 PF13177 DNA_pol3_delta2: DNA 97.2 0.0043 9.3E-08 58.9 11.9 137 148-304 1-162 (162)
190 PRK08058 DNA polymerase III su 97.2 0.0058 1.3E-07 65.5 14.3 144 145-314 6-180 (329)
191 PRK12608 transcription termina 97.2 0.0021 4.6E-08 68.1 10.6 103 153-257 120-230 (380)
192 KOG4579 Leucine-rich repeat (L 97.2 5.5E-05 1.2E-09 66.3 -1.0 84 505-591 54-142 (177)
193 PRK08769 DNA polymerase III su 97.2 0.009 1.9E-07 63.0 15.3 173 151-349 11-209 (319)
194 KOG0741 AAA+-type ATPase [Post 97.2 0.0089 1.9E-07 64.5 15.0 157 164-352 537-716 (744)
195 PF00004 AAA: ATPase family as 97.2 0.00084 1.8E-08 61.5 6.8 22 168-189 1-22 (132)
196 KOG1514 Origin recognition com 97.2 0.01 2.3E-07 66.5 15.8 200 143-352 395-625 (767)
197 PRK15386 type III secretion pr 97.1 0.0013 2.9E-08 70.5 8.1 13 752-764 156-168 (426)
198 PF00448 SRP54: SRP54-type pro 97.1 0.0027 5.9E-08 62.2 9.4 90 165-257 1-93 (196)
199 KOG0733 Nuclear AAA ATPase (VC 97.1 0.012 2.5E-07 64.8 14.7 180 145-352 191-410 (802)
200 COG0466 Lon ATP-dependent Lon 97.1 0.0039 8.5E-08 70.1 11.4 156 146-316 325-508 (782)
201 PF02562 PhoH: PhoH-like prote 97.1 0.00031 6.8E-09 68.4 2.5 129 148-286 4-156 (205)
202 TIGR01243 CDC48 AAA family ATP 97.1 0.0048 1.1E-07 74.0 13.0 172 145-343 179-382 (733)
203 PRK06871 DNA polymerase III su 97.0 0.023 5E-07 60.1 15.8 174 152-345 10-200 (325)
204 PRK08181 transposase; Validate 97.0 0.0011 2.4E-08 68.1 5.8 105 158-286 101-209 (269)
205 TIGR01243 CDC48 AAA family ATP 96.9 0.01 2.2E-07 71.3 14.1 170 145-342 454-657 (733)
206 COG2812 DnaX DNA polymerase II 96.9 0.0047 1E-07 68.5 10.2 187 144-342 16-214 (515)
207 CHL00195 ycf46 Ycf46; Provisio 96.9 0.0083 1.8E-07 67.2 12.2 172 144-342 228-429 (489)
208 PRK06090 DNA polymerase III su 96.9 0.03 6.6E-07 59.0 15.6 174 151-348 10-201 (319)
209 PRK06526 transposase; Provisio 96.9 0.00098 2.1E-08 68.1 4.3 25 165-189 98-122 (254)
210 COG1223 Predicted ATPase (AAA+ 96.9 0.012 2.7E-07 57.6 11.3 170 144-341 121-318 (368)
211 KOG2739 Leucine-rich acidic nu 96.8 0.00066 1.4E-08 66.9 2.6 58 505-562 44-101 (260)
212 PRK12727 flagellar biosynthesi 96.8 0.042 9E-07 61.1 16.6 89 164-257 349-438 (559)
213 KOG1947 Leucine rich repeat pr 96.8 0.00018 3.9E-09 82.7 -1.7 109 524-633 186-308 (482)
214 PF13207 AAA_17: AAA domain; P 96.8 0.001 2.3E-08 59.9 3.6 23 167-189 1-23 (121)
215 PRK06921 hypothetical protein; 96.8 0.0025 5.5E-08 65.7 6.8 39 164-204 116-154 (266)
216 COG0542 clpA ATP-binding subun 96.8 0.02 4.3E-07 66.5 14.2 105 144-259 491-605 (786)
217 TIGR00763 lon ATP-dependent pr 96.8 0.011 2.3E-07 71.3 12.7 46 144-189 320-371 (775)
218 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0017 3.6E-08 68.6 5.2 79 145-223 52-147 (361)
219 PRK06964 DNA polymerase III su 96.8 0.046 1E-06 58.3 16.1 92 246-349 131-226 (342)
220 PRK04296 thymidine kinase; Pro 96.7 0.0018 3.9E-08 63.4 4.5 113 166-287 3-117 (190)
221 TIGR02640 gas_vesic_GvpN gas v 96.7 0.033 7.2E-07 57.7 14.0 55 152-214 10-64 (262)
222 PRK09183 transposase/IS protei 96.7 0.0022 4.7E-08 66.1 5.1 25 165-189 102-126 (259)
223 PRK09361 radB DNA repair and r 96.7 0.0078 1.7E-07 61.0 9.0 46 164-213 22-67 (225)
224 PRK08939 primosomal protein Dn 96.7 0.0059 1.3E-07 64.3 8.3 117 148-285 135-260 (306)
225 TIGR02237 recomb_radB DNA repa 96.6 0.011 2.5E-07 59.0 10.0 48 164-215 11-58 (209)
226 COG1875 NYN ribonuclease and A 96.6 0.0038 8.1E-08 64.5 6.3 135 147-285 227-387 (436)
227 cd01393 recA_like RecA is a b 96.6 0.018 4E-07 58.3 11.5 90 164-257 18-124 (226)
228 TIGR02639 ClpA ATP-dependent C 96.6 0.01 2.2E-07 71.1 10.8 102 144-259 454-565 (731)
229 PRK07993 DNA polymerase III su 96.6 0.059 1.3E-06 57.6 15.4 177 151-347 9-203 (334)
230 PRK00771 signal recognition pa 96.6 0.087 1.9E-06 58.2 17.0 90 164-257 94-185 (437)
231 PF08423 Rad51: Rad51; InterP 96.6 0.012 2.6E-07 60.4 9.8 91 164-256 37-142 (256)
232 PRK10787 DNA-binding ATP-depen 96.6 0.013 2.8E-07 69.9 11.3 159 143-316 321-506 (784)
233 PRK06835 DNA replication prote 96.6 0.0028 6.1E-08 67.3 5.2 36 166-204 184-219 (329)
234 KOG2123 Uncharacterized conser 96.5 0.00019 4.1E-09 70.6 -3.4 57 504-564 19-75 (388)
235 KOG1947 Leucine rich repeat pr 96.5 0.00046 1E-08 79.2 -0.9 108 548-655 184-305 (482)
236 PRK04132 replication factor C 96.5 0.039 8.5E-07 65.5 14.8 151 173-346 574-729 (846)
237 KOG0730 AAA+-type ATPase [Post 96.5 0.19 4.1E-06 56.5 18.9 163 145-332 435-631 (693)
238 KOG2035 Replication factor C, 96.5 0.059 1.3E-06 53.7 13.4 208 146-372 15-262 (351)
239 cd01131 PilT Pilus retraction 96.5 0.003 6.4E-08 62.4 4.7 110 166-289 2-112 (198)
240 cd00983 recA RecA is a bacter 96.5 0.0075 1.6E-07 63.4 7.8 86 164-257 54-143 (325)
241 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.014 2.9E-07 59.7 9.5 92 164-257 18-125 (235)
242 PRK06696 uridine kinase; Valid 96.4 0.0041 9E-08 62.8 5.4 42 148-189 2-46 (223)
243 COG1484 DnaC DNA replication p 96.4 0.013 2.8E-07 60.1 8.9 75 164-258 104-178 (254)
244 cd01394 radB RadB. The archaea 96.4 0.027 5.8E-07 56.8 11.2 43 164-209 18-60 (218)
245 PRK07952 DNA replication prote 96.4 0.022 4.8E-07 57.7 10.4 76 165-259 99-174 (244)
246 TIGR02012 tigrfam_recA protein 96.4 0.011 2.3E-07 62.2 8.2 86 164-257 54-143 (321)
247 KOG2228 Origin recognition com 96.4 0.024 5.3E-07 58.0 10.2 171 144-317 24-220 (408)
248 PRK10865 protein disaggregatio 96.4 0.024 5.2E-07 68.7 12.3 47 143-189 567-622 (857)
249 cd01133 F1-ATPase_beta F1 ATP 96.4 0.019 4E-07 58.7 9.6 91 164-257 68-173 (274)
250 KOG0735 AAA+-type ATPase [Post 96.4 0.0091 2E-07 66.8 7.7 72 165-257 431-504 (952)
251 TIGR03345 VI_ClpV1 type VI sec 96.4 0.011 2.3E-07 71.5 9.0 47 143-189 565-620 (852)
252 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.011 2.3E-07 55.2 7.1 116 166-286 3-138 (159)
253 COG0470 HolB ATPase involved i 96.4 0.018 3.9E-07 62.1 10.2 138 145-302 2-167 (325)
254 TIGR03346 chaperone_ClpB ATP-d 96.3 0.014 3.1E-07 70.9 10.1 47 143-189 564-619 (852)
255 KOG2739 Leucine-rich acidic nu 96.3 0.0018 3.9E-08 63.9 1.9 101 524-629 41-152 (260)
256 TIGR02238 recomb_DMC1 meiotic 96.3 0.023 5.1E-07 60.0 10.3 92 164-257 95-201 (313)
257 KOG2123 Uncharacterized conser 96.3 0.00035 7.5E-09 68.8 -3.1 99 524-626 17-123 (388)
258 COG0572 Udk Uridine kinase [Nu 96.3 0.012 2.7E-07 57.3 7.3 79 164-248 7-85 (218)
259 TIGR01425 SRP54_euk signal rec 96.3 0.2 4.3E-06 55.0 17.3 26 164-189 99-124 (429)
260 cd01120 RecA-like_NTPases RecA 96.3 0.024 5.1E-07 54.0 9.4 39 167-208 1-39 (165)
261 KOG0743 AAA+-type ATPase [Post 96.3 0.8 1.7E-05 49.5 21.1 150 166-355 236-417 (457)
262 PLN03187 meiotic recombination 96.3 0.026 5.7E-07 60.1 10.2 91 164-256 125-230 (344)
263 COG1102 Cmk Cytidylate kinase 96.2 0.013 2.9E-07 53.3 6.7 45 167-225 2-46 (179)
264 KOG1969 DNA replication checkp 96.2 0.01 2.3E-07 66.6 7.3 73 164-259 325-399 (877)
265 PF07693 KAP_NTPase: KAP famil 96.2 0.1 2.2E-06 56.3 15.1 40 150-189 2-44 (325)
266 PRK09354 recA recombinase A; P 96.2 0.016 3.4E-07 61.5 8.4 86 164-257 59-148 (349)
267 PRK05541 adenylylsulfate kinas 96.2 0.011 2.5E-07 57.1 6.9 36 164-202 6-41 (176)
268 PRK05703 flhF flagellar biosyn 96.2 0.16 3.4E-06 56.4 16.4 88 165-257 221-309 (424)
269 KOG0734 AAA+-type ATPase conta 96.2 0.011 2.4E-07 63.9 6.8 45 145-189 305-361 (752)
270 COG0194 Gmk Guanylate kinase [ 96.2 0.015 3.3E-07 54.7 6.9 25 165-189 4-28 (191)
271 KOG2004 Mitochondrial ATP-depe 96.1 0.03 6.4E-07 63.0 10.1 157 145-316 412-596 (906)
272 KOG3864 Uncharacterized conser 96.1 0.00068 1.5E-08 64.0 -2.0 83 673-763 102-187 (221)
273 PRK08699 DNA polymerase III su 96.1 0.089 1.9E-06 56.0 13.6 87 246-344 112-202 (325)
274 cd03115 SRP The signal recogni 96.1 0.022 4.7E-07 55.0 8.3 23 167-189 2-24 (173)
275 PF00485 PRK: Phosphoribulokin 96.1 0.047 1E-06 53.7 10.8 82 167-251 1-87 (194)
276 TIGR02239 recomb_RAD51 DNA rep 96.1 0.03 6.6E-07 59.3 10.0 59 164-224 95-157 (316)
277 COG2884 FtsE Predicted ATPase 96.1 0.021 4.5E-07 53.7 7.4 124 164-292 27-203 (223)
278 TIGR02858 spore_III_AA stage I 96.1 0.035 7.7E-07 57.2 10.0 125 153-289 98-232 (270)
279 cd03247 ABCC_cytochrome_bd The 96.1 0.025 5.4E-07 54.8 8.6 127 164-300 27-169 (178)
280 PRK15455 PrkA family serine pr 96.1 0.0064 1.4E-07 67.6 4.8 45 145-189 77-127 (644)
281 COG4608 AppF ABC-type oligopep 96.1 0.031 6.6E-07 56.2 9.0 127 164-294 38-178 (268)
282 PRK14722 flhF flagellar biosyn 96.1 0.023 5E-07 61.0 8.7 89 164-257 136-225 (374)
283 CHL00095 clpC Clp protease ATP 96.1 0.01 2.2E-07 71.9 6.9 47 143-189 508-563 (821)
284 cd03238 ABC_UvrA The excision 96.1 0.021 4.5E-07 54.9 7.6 125 164-300 20-161 (176)
285 PRK06547 hypothetical protein; 96.0 0.0094 2E-07 57.0 5.1 35 155-189 5-39 (172)
286 COG1136 SalX ABC-type antimicr 96.0 0.018 3.8E-07 56.9 7.0 131 164-300 30-215 (226)
287 KOG0744 AAA+-type ATPase [Post 96.0 0.023 5.1E-07 57.7 7.9 81 165-258 177-261 (423)
288 TIGR00959 ffh signal recogniti 96.0 0.033 7.2E-07 61.2 9.9 92 164-257 98-192 (428)
289 PRK10867 signal recognition pa 96.0 0.034 7.4E-07 61.2 9.9 26 164-189 99-124 (433)
290 KOG0733 Nuclear AAA ATPase (VC 96.0 0.092 2E-06 58.1 12.8 151 165-341 545-717 (802)
291 TIGR03877 thermo_KaiC_1 KaiC d 96.0 0.048 1E-06 55.6 10.5 49 164-217 20-68 (237)
292 COG1618 Predicted nucleotide k 96.0 0.0083 1.8E-07 54.7 4.2 24 166-189 6-29 (179)
293 PRK10463 hydrogenase nickel in 96.0 0.033 7.1E-07 57.4 9.0 33 157-189 96-128 (290)
294 PHA00729 NTP-binding motif con 96.0 0.0099 2.2E-07 58.7 5.0 35 155-189 7-41 (226)
295 cd01129 PulE-GspE PulE/GspE Th 96.0 0.018 3.9E-07 59.5 7.2 104 147-263 62-165 (264)
296 PF13604 AAA_30: AAA domain; P 96.0 0.022 4.8E-07 56.0 7.6 37 153-189 6-42 (196)
297 PF14532 Sigma54_activ_2: Sigm 95.9 0.0091 2E-07 55.1 4.5 43 147-189 1-45 (138)
298 cd03216 ABC_Carb_Monos_I This 95.9 0.014 3E-07 55.6 5.9 116 164-289 25-145 (163)
299 PRK04301 radA DNA repair and r 95.9 0.057 1.2E-06 57.8 11.1 58 164-223 101-162 (317)
300 PF12061 DUF3542: Protein of u 95.9 0.012 2.5E-07 59.2 5.0 73 11-90 298-370 (402)
301 PF01695 IstB_IS21: IstB-like 95.9 0.0085 1.8E-07 57.8 4.1 74 164-258 46-119 (178)
302 TIGR03499 FlhF flagellar biosy 95.9 0.036 7.8E-07 58.0 9.1 88 164-256 193-281 (282)
303 PRK10733 hflB ATP-dependent me 95.9 0.041 8.9E-07 64.6 10.5 169 145-340 153-355 (644)
304 COG2607 Predicted ATPase (AAA+ 95.9 0.056 1.2E-06 52.8 9.4 46 144-189 60-109 (287)
305 cd01121 Sms Sms (bacterial rad 95.8 0.04 8.7E-07 59.7 9.6 85 164-257 81-168 (372)
306 PF06309 Torsin: Torsin; Inte 95.8 0.052 1.1E-06 48.0 8.4 45 145-189 26-77 (127)
307 cd03223 ABCD_peroxisomal_ALDP 95.8 0.034 7.4E-07 53.1 8.0 117 164-290 26-152 (166)
308 cd03246 ABCC_Protease_Secretio 95.8 0.02 4.4E-07 55.2 6.4 127 164-300 27-168 (173)
309 PRK07667 uridine kinase; Provi 95.8 0.013 2.9E-07 57.5 5.1 37 153-189 3-41 (193)
310 PF13238 AAA_18: AAA domain; P 95.8 0.0079 1.7E-07 54.7 3.3 22 168-189 1-22 (129)
311 PLN00020 ribulose bisphosphate 95.8 0.025 5.5E-07 59.5 7.2 27 163-189 146-172 (413)
312 PRK09270 nucleoside triphospha 95.8 0.014 3E-07 59.3 5.3 27 163-189 31-57 (229)
313 KOG0652 26S proteasome regulat 95.7 0.1 2.2E-06 51.3 10.7 195 136-354 161-393 (424)
314 cd03228 ABCC_MRP_Like The MRP 95.7 0.04 8.7E-07 53.0 8.2 126 164-300 27-167 (171)
315 PRK06067 flagellar accessory p 95.7 0.065 1.4E-06 54.6 10.2 88 164-257 24-130 (234)
316 PRK14974 cell division protein 95.7 0.095 2.1E-06 55.8 11.5 91 164-258 139-233 (336)
317 TIGR00554 panK_bact pantothena 95.7 0.063 1.4E-06 55.8 9.8 27 163-189 60-86 (290)
318 PRK11034 clpA ATP-dependent Cl 95.7 0.026 5.7E-07 66.8 7.9 46 144-189 458-512 (758)
319 cd02019 NK Nucleoside/nucleoti 95.7 0.0092 2E-07 47.3 2.8 23 167-189 1-23 (69)
320 COG0563 Adk Adenylate kinase a 95.6 0.021 4.5E-07 54.9 5.7 23 167-189 2-24 (178)
321 PLN03186 DNA repair protein RA 95.6 0.089 1.9E-06 56.2 11.0 59 164-224 122-184 (342)
322 COG1126 GlnQ ABC-type polar am 95.6 0.074 1.6E-06 51.3 9.2 125 164-292 27-202 (240)
323 cd03214 ABC_Iron-Siderophores_ 95.6 0.045 9.7E-07 53.2 8.2 121 164-289 24-161 (180)
324 PRK13531 regulatory ATPase Rav 95.6 0.017 3.7E-07 63.5 5.7 44 144-189 20-63 (498)
325 COG0542 clpA ATP-binding subun 95.6 0.044 9.6E-07 63.7 9.1 152 145-316 171-346 (786)
326 PRK08233 hypothetical protein; 95.6 0.011 2.3E-07 57.7 3.7 25 165-189 3-27 (182)
327 PRK11889 flhF flagellar biosyn 95.6 0.064 1.4E-06 57.4 9.4 89 164-257 240-330 (436)
328 PF00006 ATP-synt_ab: ATP synt 95.6 0.037 8E-07 54.8 7.3 97 156-257 5-115 (215)
329 PF13306 LRR_5: Leucine rich r 95.5 0.032 7E-07 50.6 6.5 97 525-628 11-111 (129)
330 TIGR03881 KaiC_arch_4 KaiC dom 95.5 0.098 2.1E-06 53.1 10.7 53 164-222 19-71 (229)
331 PF00154 RecA: recA bacterial 95.5 0.059 1.3E-06 56.6 9.0 88 164-259 52-143 (322)
332 PF13671 AAA_33: AAA domain; P 95.5 0.012 2.6E-07 54.7 3.6 23 167-189 1-23 (143)
333 COG0464 SpoVK ATPases of the A 95.5 0.18 3.9E-06 57.8 13.8 134 164-320 275-427 (494)
334 TIGR02236 recomb_radA DNA repa 95.5 0.066 1.4E-06 57.2 9.6 58 164-223 94-155 (310)
335 PTZ00301 uridine kinase; Provi 95.5 0.012 2.6E-07 58.2 3.7 25 165-189 3-27 (210)
336 PF13481 AAA_25: AAA domain; P 95.5 0.065 1.4E-06 52.7 8.9 42 166-207 33-81 (193)
337 PRK12723 flagellar biosynthesi 95.5 0.076 1.6E-06 57.7 9.9 90 164-257 173-264 (388)
338 KOG0728 26S proteasome regulat 95.5 0.2 4.3E-06 49.0 11.5 165 146-334 148-349 (404)
339 COG1066 Sms Predicted ATP-depe 95.5 0.095 2.1E-06 55.5 10.1 96 153-258 79-179 (456)
340 TIGR00064 ftsY signal recognit 95.4 0.099 2.1E-06 54.2 10.3 90 164-257 71-164 (272)
341 COG0468 RecA RecA/RadA recombi 95.4 0.066 1.4E-06 55.0 8.8 90 164-257 59-151 (279)
342 cd03222 ABC_RNaseL_inhibitor T 95.4 0.022 4.9E-07 54.7 5.1 26 164-189 24-49 (177)
343 PF03308 ArgK: ArgK protein; 95.4 0.029 6.3E-07 56.0 6.0 61 152-213 14-76 (266)
344 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.036 7.9E-07 51.5 6.4 104 164-290 25-131 (144)
345 COG4088 Predicted nucleotide k 95.4 0.01 2.2E-07 56.2 2.7 24 166-189 2-25 (261)
346 TIGR00708 cobA cob(I)alamin ad 95.4 0.072 1.6E-06 50.4 8.3 117 165-286 5-140 (173)
347 PRK05480 uridine/cytidine kina 95.4 0.014 3.1E-07 58.3 3.9 27 163-189 4-30 (209)
348 COG1428 Deoxynucleoside kinase 95.4 0.013 2.8E-07 56.3 3.3 48 165-218 4-51 (216)
349 cd03230 ABC_DR_subfamily_A Thi 95.4 0.037 8E-07 53.4 6.6 120 164-290 25-159 (173)
350 TIGR00235 udk uridine kinase. 95.4 0.014 3E-07 58.2 3.7 27 163-189 4-30 (207)
351 PF13306 LRR_5: Leucine rich r 95.4 0.031 6.8E-07 50.8 5.8 110 505-622 13-128 (129)
352 KOG0731 AAA+-type ATPase conta 95.4 0.25 5.4E-06 57.2 14.0 174 145-345 312-521 (774)
353 PTZ00088 adenylate kinase 1; P 95.4 0.015 3.3E-07 58.4 3.9 22 168-189 9-30 (229)
354 PRK13539 cytochrome c biogenes 95.4 0.028 6.2E-07 56.0 5.9 26 164-189 27-52 (207)
355 cd02025 PanK Pantothenate kina 95.4 0.07 1.5E-06 53.5 8.6 23 167-189 1-23 (220)
356 PRK12724 flagellar biosynthesi 95.3 0.065 1.4E-06 58.1 8.8 25 165-189 223-247 (432)
357 PTZ00035 Rad51 protein; Provis 95.3 0.18 3.9E-06 54.0 12.2 92 164-257 117-223 (337)
358 PF00560 LRR_1: Leucine Rich R 95.3 0.0057 1.2E-07 35.9 0.5 18 574-591 2-19 (22)
359 PRK08972 fliI flagellum-specif 95.3 0.042 9.1E-07 59.9 7.3 90 164-258 161-263 (444)
360 PRK06762 hypothetical protein; 95.3 0.015 3.3E-07 55.7 3.6 25 165-189 2-26 (166)
361 PRK12726 flagellar biosynthesi 95.3 0.17 3.7E-06 54.0 11.5 90 164-258 205-296 (407)
362 TIGR00390 hslU ATP-dependent p 95.3 0.036 7.9E-07 59.7 6.6 46 144-189 12-71 (441)
363 COG1120 FepC ABC-type cobalami 95.3 0.064 1.4E-06 54.2 8.0 127 164-292 27-205 (258)
364 COG1703 ArgK Putative periplas 95.3 0.029 6.3E-07 56.8 5.4 61 153-214 37-99 (323)
365 PRK05439 pantothenate kinase; 95.3 0.13 2.7E-06 54.0 10.4 81 163-248 84-166 (311)
366 TIGR01360 aden_kin_iso1 adenyl 95.3 0.015 3.3E-07 57.0 3.5 26 164-189 2-27 (188)
367 PRK04328 hypothetical protein; 95.3 0.073 1.6E-06 54.6 8.6 54 164-223 22-75 (249)
368 cd03283 ABC_MutS-like MutS-lik 95.2 0.046 9.9E-07 53.9 6.7 23 166-188 26-48 (199)
369 PRK13765 ATP-dependent proteas 95.2 0.036 7.7E-07 64.1 6.7 75 144-223 31-105 (637)
370 PF08433 KTI12: Chromatin asso 95.2 0.044 9.6E-07 56.5 6.8 24 166-189 2-25 (270)
371 KOG3347 Predicted nucleotide k 95.2 0.031 6.6E-07 50.2 4.7 71 165-248 7-77 (176)
372 COG1419 FlhF Flagellar GTP-bin 95.2 0.16 3.4E-06 54.4 10.8 88 164-256 202-290 (407)
373 PRK03839 putative kinase; Prov 95.2 0.016 3.4E-07 56.4 3.3 23 167-189 2-24 (180)
374 TIGR03575 selen_PSTK_euk L-ser 95.2 0.073 1.6E-06 56.5 8.4 22 168-189 2-23 (340)
375 PRK12678 transcription termina 95.2 0.041 8.8E-07 61.2 6.6 98 156-257 406-513 (672)
376 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.081 1.8E-06 53.2 8.2 122 164-288 29-201 (254)
377 cd01124 KaiC KaiC is a circadi 95.1 0.081 1.8E-06 51.7 8.3 45 167-216 1-45 (187)
378 COG0396 sufC Cysteine desulfur 95.1 0.07 1.5E-06 52.0 7.3 63 234-299 149-217 (251)
379 TIGR00150 HI0065_YjeE ATPase, 95.1 0.036 7.8E-07 50.0 5.1 38 152-189 7-46 (133)
380 KOG0736 Peroxisome assembly fa 95.1 0.19 4.2E-06 57.2 11.7 92 144-258 672-775 (953)
381 PRK06217 hypothetical protein; 95.1 0.033 7.1E-07 54.3 5.2 23 167-189 3-25 (183)
382 cd03229 ABC_Class3 This class 95.0 0.036 7.8E-07 53.7 5.3 26 164-189 25-50 (178)
383 PF07728 AAA_5: AAA domain (dy 95.0 0.053 1.1E-06 50.1 6.2 42 168-215 2-43 (139)
384 PRK06002 fliI flagellum-specif 95.0 0.066 1.4E-06 58.7 7.7 88 164-257 164-264 (450)
385 COG3854 SpoIIIAA ncharacterize 95.0 0.07 1.5E-06 51.7 6.8 124 156-290 128-257 (308)
386 KOG0739 AAA+-type ATPase [Post 95.0 0.14 3E-06 51.6 9.0 91 144-258 133-236 (439)
387 PF12775 AAA_7: P-loop contain 95.0 0.042 9E-07 57.0 5.8 90 153-258 22-111 (272)
388 cd01135 V_A-ATPase_B V/A-type 94.9 0.1 2.2E-06 53.2 8.4 94 164-258 68-177 (276)
389 COG3598 RepA RecA-family ATPas 94.9 0.095 2.1E-06 53.4 7.8 60 167-226 91-158 (402)
390 cd00071 GMPK Guanosine monopho 94.9 0.039 8.4E-07 50.7 4.9 23 167-189 1-23 (137)
391 PRK04040 adenylate kinase; Pro 94.9 0.024 5.2E-07 55.2 3.6 24 166-189 3-26 (188)
392 TIGR03878 thermo_KaiC_2 KaiC d 94.9 0.13 2.9E-06 53.0 9.3 40 164-206 35-74 (259)
393 PRK05973 replicative DNA helic 94.9 0.17 3.6E-06 50.9 9.6 49 164-217 63-111 (237)
394 TIGR01420 pilT_fam pilus retra 94.9 0.041 8.9E-07 59.4 5.7 110 164-287 121-231 (343)
395 cd02027 APSK Adenosine 5'-phos 94.8 0.079 1.7E-06 49.5 6.8 23 167-189 1-23 (149)
396 PRK11823 DNA repair protein Ra 94.8 0.1 2.2E-06 58.4 8.8 85 164-257 79-166 (446)
397 PRK00625 shikimate kinase; Pro 94.8 0.022 4.7E-07 54.6 3.1 23 167-189 2-24 (173)
398 PRK05201 hslU ATP-dependent pr 94.8 0.066 1.4E-06 57.8 6.9 78 144-221 15-107 (443)
399 PF00910 RNA_helicase: RNA hel 94.8 0.02 4.3E-07 50.1 2.6 22 168-189 1-22 (107)
400 PRK09519 recA DNA recombinatio 94.8 0.088 1.9E-06 61.8 8.5 86 164-257 59-148 (790)
401 TIGR01359 UMP_CMP_kin_fam UMP- 94.8 0.019 4.2E-07 55.9 2.8 23 167-189 1-23 (183)
402 PF10236 DAP3: Mitochondrial r 94.8 0.98 2.1E-05 47.9 15.8 48 297-344 258-305 (309)
403 cd03281 ABC_MSH5_euk MutS5 hom 94.8 0.027 5.9E-07 56.2 3.8 23 165-187 29-51 (213)
404 PRK05342 clpX ATP-dependent pr 94.8 0.093 2E-06 57.7 8.3 46 144-189 71-132 (412)
405 PRK12597 F0F1 ATP synthase sub 94.8 0.073 1.6E-06 58.8 7.4 92 164-257 142-247 (461)
406 PRK13543 cytochrome c biogenes 94.8 0.13 2.9E-06 51.4 8.8 26 164-189 36-61 (214)
407 PF01583 APS_kinase: Adenylyls 94.8 0.031 6.6E-07 52.0 3.8 25 165-189 2-26 (156)
408 cd02023 UMPK Uridine monophosp 94.7 0.02 4.4E-07 56.6 2.8 23 167-189 1-23 (198)
409 cd02028 UMPK_like Uridine mono 94.7 0.055 1.2E-06 52.4 5.7 23 167-189 1-23 (179)
410 PRK15453 phosphoribulokinase; 94.7 0.19 4.1E-06 51.4 9.6 80 164-246 4-89 (290)
411 COG4618 ArpD ABC-type protease 94.7 0.12 2.7E-06 56.1 8.6 26 164-189 361-386 (580)
412 TIGR03498 FliI_clade3 flagella 94.7 0.073 1.6E-06 58.3 7.2 91 164-258 139-241 (418)
413 cd03217 ABC_FeS_Assembly ABC-t 94.7 0.061 1.3E-06 53.3 6.1 25 164-188 25-49 (200)
414 COG3640 CooC CO dehydrogenase 94.7 0.049 1.1E-06 53.1 5.2 42 167-210 2-43 (255)
415 PRK05986 cob(I)alamin adenolsy 94.7 0.09 1.9E-06 50.5 6.9 118 164-286 21-158 (191)
416 PF06745 KaiC: KaiC; InterPro 94.7 0.054 1.2E-06 54.9 5.9 89 164-257 18-125 (226)
417 PRK14721 flhF flagellar biosyn 94.7 0.18 3.8E-06 55.3 10.1 60 164-224 190-250 (420)
418 PRK08533 flagellar accessory p 94.7 0.2 4.3E-06 50.7 9.9 54 164-223 23-76 (230)
419 PF13245 AAA_19: Part of AAA d 94.7 0.098 2.1E-06 42.2 6.1 25 164-188 9-34 (76)
420 cd02024 NRK1 Nicotinamide ribo 94.6 0.023 5.1E-07 54.9 2.8 23 167-189 1-23 (187)
421 TIGR00764 lon_rel lon-related 94.6 0.092 2E-06 61.0 8.1 75 144-223 18-92 (608)
422 KOG2170 ATPase of the AAA+ sup 94.6 0.054 1.2E-06 54.7 5.3 96 145-259 83-190 (344)
423 cd03369 ABCC_NFT1 Domain 2 of 94.6 0.21 4.5E-06 49.8 9.6 26 164-189 33-58 (207)
424 COG0465 HflB ATP-dependent Zn 94.6 0.53 1.2E-05 53.4 13.5 172 144-343 150-356 (596)
425 PF07726 AAA_3: ATPase family 94.5 0.022 4.8E-07 50.4 2.1 27 168-197 2-28 (131)
426 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.048 1E-06 51.6 4.7 117 164-291 24-145 (157)
427 TIGR02322 phosphon_PhnN phosph 94.5 0.029 6.4E-07 54.4 3.3 24 166-189 2-25 (179)
428 PRK08149 ATP synthase SpaL; Va 94.5 0.11 2.3E-06 57.0 7.8 89 164-258 150-252 (428)
429 TIGR02655 circ_KaiC circadian 94.5 0.22 4.7E-06 56.7 10.6 97 154-256 250-362 (484)
430 cd02029 PRK_like Phosphoribulo 94.5 0.15 3.3E-06 51.6 8.2 79 167-248 1-85 (277)
431 PRK00131 aroK shikimate kinase 94.5 0.033 7.2E-07 53.8 3.5 25 165-189 4-28 (175)
432 PRK06995 flhF flagellar biosyn 94.5 0.15 3.3E-06 56.8 8.9 59 165-224 256-315 (484)
433 PF00158 Sigma54_activat: Sigm 94.5 0.054 1.2E-06 51.6 4.8 44 146-189 1-46 (168)
434 PTZ00185 ATPase alpha subunit; 94.4 0.15 3.3E-06 56.2 8.6 94 164-258 188-300 (574)
435 PF00625 Guanylate_kin: Guanyl 94.4 0.051 1.1E-06 52.9 4.7 36 165-203 2-37 (183)
436 PRK08927 fliI flagellum-specif 94.4 0.25 5.4E-06 54.2 10.3 89 164-257 157-258 (442)
437 cd01130 VirB11-like_ATPase Typ 94.4 0.036 7.8E-07 54.1 3.6 104 153-266 14-119 (186)
438 COG0488 Uup ATPase components 94.4 0.33 7.2E-06 55.1 11.6 269 11-302 213-511 (530)
439 PF03205 MobB: Molybdopterin g 94.4 0.052 1.1E-06 50.0 4.3 39 166-206 1-39 (140)
440 TIGR00416 sms DNA repair prote 94.4 0.19 4E-06 56.3 9.5 95 154-257 81-180 (454)
441 KOG0735 AAA+-type ATPase [Post 94.4 1.1 2.3E-05 51.1 14.9 149 166-342 702-870 (952)
442 PF03215 Rad17: Rad17 cell cyc 94.3 0.054 1.2E-06 61.2 5.3 55 145-204 20-79 (519)
443 TIGR02902 spore_lonB ATP-depen 94.3 0.058 1.2E-06 61.8 5.6 45 145-189 66-110 (531)
444 PRK05922 type III secretion sy 94.3 0.12 2.6E-06 56.6 7.7 90 164-258 156-258 (434)
445 PRK00889 adenylylsulfate kinas 94.3 0.042 9E-07 53.1 3.8 26 164-189 3-28 (175)
446 cd00227 CPT Chloramphenicol (C 94.3 0.034 7.4E-07 53.7 3.2 24 166-189 3-26 (175)
447 cd02021 GntK Gluconate kinase 94.3 0.03 6.6E-07 52.5 2.8 23 167-189 1-23 (150)
448 KOG1051 Chaperone HSP104 and r 94.3 0.15 3.3E-06 60.3 9.0 102 144-259 562-672 (898)
449 PRK09280 F0F1 ATP synthase sub 94.3 0.22 4.7E-06 55.0 9.6 92 164-257 143-248 (463)
450 cd02020 CMPK Cytidine monophos 94.3 0.031 6.7E-07 52.2 2.8 23 167-189 1-23 (147)
451 smart00072 GuKc Guanylate kina 94.3 0.12 2.7E-06 50.3 7.0 25 165-189 2-26 (184)
452 TIGR02030 BchI-ChlI magnesium 94.2 0.062 1.4E-06 57.3 5.2 45 145-189 5-49 (337)
453 TIGR03263 guanyl_kin guanylate 94.2 0.035 7.6E-07 53.9 3.1 24 166-189 2-25 (180)
454 PRK13949 shikimate kinase; Pro 94.2 0.037 7.9E-07 53.0 3.1 23 167-189 3-25 (169)
455 PRK14723 flhF flagellar biosyn 94.2 0.19 4E-06 59.0 9.2 87 165-257 185-273 (767)
456 PRK10416 signal recognition pa 94.2 0.29 6.2E-06 52.0 10.0 26 164-189 113-138 (318)
457 CHL00081 chlI Mg-protoporyphyr 94.2 0.053 1.1E-06 57.8 4.4 46 144-189 17-62 (350)
458 KOG0726 26S proteasome regulat 94.2 0.45 9.7E-06 47.9 10.4 45 145-189 186-243 (440)
459 COG0541 Ffh Signal recognition 94.2 0.41 8.9E-06 51.4 10.9 58 164-225 99-158 (451)
460 cd01136 ATPase_flagellum-secre 94.1 0.35 7.5E-06 51.2 10.4 89 164-257 68-169 (326)
461 PRK10751 molybdopterin-guanine 94.1 0.046 9.9E-07 51.9 3.5 26 164-189 5-30 (173)
462 cd01132 F1_ATPase_alpha F1 ATP 94.1 0.13 2.8E-06 52.5 6.9 90 164-258 68-172 (274)
463 KOG1532 GTPase XAB1, interacts 94.1 0.055 1.2E-06 53.6 4.0 61 164-225 18-87 (366)
464 COG1124 DppF ABC-type dipeptid 94.1 0.064 1.4E-06 52.8 4.4 26 164-189 32-57 (252)
465 PRK14530 adenylate kinase; Pro 94.1 0.04 8.7E-07 55.3 3.3 24 166-189 4-27 (215)
466 PTZ00494 tuzin-like protein; P 94.1 0.5 1.1E-05 50.8 11.2 163 143-316 370-544 (664)
467 PRK13947 shikimate kinase; Pro 94.1 0.043 9.3E-07 52.8 3.3 23 167-189 3-25 (171)
468 PF03193 DUF258: Protein of un 94.0 0.069 1.5E-06 49.9 4.4 36 151-189 24-59 (161)
469 TIGR02524 dot_icm_DotB Dot/Icm 94.0 0.069 1.5E-06 57.6 5.1 101 156-263 126-228 (358)
470 PRK15064 ABC transporter ATP-b 94.0 0.21 4.5E-06 57.9 9.4 26 164-189 26-51 (530)
471 CHL00206 ycf2 Ycf2; Provisiona 94.0 0.73 1.6E-05 58.7 14.1 25 165-189 1630-1654(2281)
472 COG1131 CcmA ABC-type multidru 94.0 0.45 9.7E-06 50.1 11.1 26 164-189 30-55 (293)
473 COG1936 Predicted nucleotide k 94.0 0.04 8.6E-07 51.2 2.7 20 167-186 2-21 (180)
474 PF08477 Miro: Miro-like prote 94.0 0.046 1E-06 48.8 3.1 22 168-189 2-23 (119)
475 PRK07132 DNA polymerase III su 93.9 1.8 3.8E-05 45.5 15.1 166 153-347 5-184 (299)
476 PRK13407 bchI magnesium chelat 93.9 0.066 1.4E-06 57.0 4.6 46 144-189 8-53 (334)
477 PF08298 AAA_PrkA: PrkA AAA do 93.9 0.086 1.9E-06 55.4 5.3 46 144-189 61-112 (358)
478 PRK06936 type III secretion sy 93.9 0.33 7.2E-06 53.2 10.0 89 164-257 161-262 (439)
479 TIGR01069 mutS2 MutS2 family p 93.9 0.044 9.4E-07 65.4 3.6 191 164-371 321-523 (771)
480 smart00534 MUTSac ATPase domai 93.9 0.023 4.9E-07 55.5 1.0 117 167-292 1-128 (185)
481 TIGR00073 hypB hydrogenase acc 93.8 0.066 1.4E-06 53.3 4.2 31 159-189 16-46 (207)
482 KOG0729 26S proteasome regulat 93.8 0.17 3.7E-06 50.0 6.7 45 145-189 178-235 (435)
483 COG2401 ABC-type ATPase fused 93.8 0.072 1.6E-06 56.2 4.4 148 146-297 373-579 (593)
484 PRK12339 2-phosphoglycerate ki 93.8 0.058 1.2E-06 52.9 3.7 25 165-189 3-27 (197)
485 PRK10078 ribose 1,5-bisphospho 93.8 0.048 1E-06 53.3 3.1 24 166-189 3-26 (186)
486 cd00464 SK Shikimate kinase (S 93.8 0.05 1.1E-06 51.2 3.1 22 168-189 2-23 (154)
487 cd00820 PEPCK_HprK Phosphoenol 93.7 0.059 1.3E-06 46.4 3.1 22 165-186 15-36 (107)
488 TIGR03305 alt_F1F0_F1_bet alte 93.7 0.32 6.9E-06 53.5 9.5 93 164-258 137-243 (449)
489 PRK00300 gmk guanylate kinase; 93.7 0.05 1.1E-06 54.2 3.2 26 164-189 4-29 (205)
490 TIGR01313 therm_gnt_kin carboh 93.7 0.044 9.4E-07 52.3 2.6 22 168-189 1-22 (163)
491 PF03266 NTPase_1: NTPase; In 93.7 0.052 1.1E-06 51.7 3.1 22 168-189 2-23 (168)
492 cd03282 ABC_MSH4_euk MutS4 hom 93.7 0.038 8.3E-07 54.6 2.2 120 164-293 28-158 (204)
493 PF13086 AAA_11: AAA domain; P 93.7 0.16 3.4E-06 51.6 6.9 53 167-219 19-75 (236)
494 cd03213 ABCG_EPDR ABCG transpo 93.7 0.16 3.4E-06 50.0 6.5 26 164-189 34-59 (194)
495 PRK14527 adenylate kinase; Pro 93.7 0.058 1.3E-06 53.0 3.4 26 164-189 5-30 (191)
496 PRK07196 fliI flagellum-specif 93.6 0.24 5.3E-06 54.3 8.4 27 163-189 153-179 (434)
497 PRK05057 aroK shikimate kinase 93.6 0.059 1.3E-06 51.8 3.3 24 166-189 5-28 (172)
498 PRK13975 thymidylate kinase; P 93.6 0.061 1.3E-06 53.1 3.5 24 166-189 3-26 (196)
499 PF00560 LRR_1: Leucine Rich R 93.6 0.033 7.2E-07 32.6 1.0 22 596-619 1-22 (22)
500 PRK07594 type III secretion sy 93.6 0.31 6.7E-06 53.5 9.1 91 163-258 153-256 (433)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-100 Score=890.64 Aligned_cols=832 Identities=42% Similarity=0.696 Sum_probs=687.8
Q ss_pred hhHHHHhHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHh
Q 002863 11 CDDTISRCLHCTVRKARYVCNLQDNIHSLQEELRRLTEVRNDVKIRIIVAEQQQMKPLEQVHGWLSRVQEVETKVEKLKE 90 (873)
Q Consensus 11 ~~~~~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~v~~Wl~~~~~~~~d~ed~~d 90 (873)
++..++++++.+.++...+.++++.+..|++++..|+.++.| |+.++.. ...+..|.+.+++++|+++|+++
T Consensus 5 ~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 5 VSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKRDD-LERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred EEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhcch-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888999999999999999999999999999999998 4444432 47788999999999999999998
Q ss_pred --------h---------------cCCCCCCCc---ccchhHHHHHHHHHHHHHHhhcCCcccccc-cCCCCCCCCCCCC
Q 002863 91 --------E---------------ECPESRCTK---STYKLGKKVFRTLREVRSLRQEGDFKDVAQ-PVPENPVDERPLP 143 (873)
Q Consensus 91 --------~---------------~~~~~~~~~---~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 143 (873)
. .|..++|.+ ..|.+++++.+..++++.+..++.|..+.. ..++...+.+|..
T Consensus 77 ~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~ 156 (889)
T KOG4658|consen 77 LFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQ 156 (889)
T ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCC
Confidence 0 111233332 556778888899999998887776655543 2233334444443
Q ss_pred Ccc-cchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTV-VGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~-vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
+.. ||.++.++++++.|.+++..+++|+||||+||||||+.++|+...++.+||.++||+||+.++...++++|++.++
T Consensus 157 ~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~ 236 (889)
T KOG4658|consen 157 SESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLG 236 (889)
T ss_pred ccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhc
Confidence 333 9999999999999999888999999999999999999999999449999999999999999999999999999999
Q ss_pred CCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhhhc-cccccceeec
Q 002863 223 LFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVCGQ-MEAHRSFKVE 301 (873)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~-~~~~~~~~l~ 301 (873)
.....+.....++.+..|.+.|++|||+|||||||+..+|+.++.++|.. .+||||++|||+++||.. |++...++++
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~-~~g~KvvlTTRs~~V~~~~m~~~~~~~v~ 315 (889)
T KOG4658|consen 237 LLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSR-ENGSKVVLTTRSEEVCGRAMGVDYPIEVE 315 (889)
T ss_pred cCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCc-cCCeEEEEEeccHhhhhccccCCcccccc
Confidence 87777777777899999999999999999999999999999999999998 899999999999999998 8888999999
Q ss_pred cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHHHHHch-hcccCCchh
Q 002863 302 CLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAMASRKTPREWEHAIEVLRSS-ASKFAGMEK 380 (873)
Q Consensus 302 ~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~l~~~-~~~~~~~~~ 380 (873)
.|+++|||.||++.++......++.++++|++|+++|+|+|||++++|+.|+.|++..||+++.+.+.+. ....++.++
T Consensus 316 ~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~ 395 (889)
T KOG4658|consen 316 CLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEE 395 (889)
T ss_pred ccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhh
Confidence 9999999999999999886666777999999999999999999999999999999999999999999887 555666778
Q ss_pred HHHHHhhhccccCCcchhHHHHhhhccCCCCccccHHHHHHHHHHcCCccCCC-hhhHHHHHHHHHHHHHHcccccccc-
Q 002863 381 RVFSRLKFSFDFLPSDATRFCLLYCTLFPEDYRISIEDLIDCWICEGFLDDHD-GIEARNQGYSLIRNLLHACLLEEEK- 458 (873)
Q Consensus 381 ~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~aeg~i~~~~-~~~~~~~~~~~l~~L~~~~ll~~~~- 458 (873)
.++++|.+||++||+ ++|.||+|||+||+||.|+++.|+.+||||||+.+.+ +..+++.|+.|+.+|+++++++...
T Consensus 396 ~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 396 SILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 999999999999995 9999999999999999999999999999999999854 5889999999999999999999873
Q ss_pred ---CCceEEEeeeechhhhhhhccCCccceEEEEcCCCcccCCccccccceEEEEeeccccccccccCCCCcccEEEecC
Q 002863 459 ---DNSVKMHYVVRDMALWIASTMDNKKEKFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNS 535 (873)
Q Consensus 459 ---~~~~~mHdlv~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~ 535 (873)
..+|+|||+||++|.|+|++.+.+++++++..+.+....|....+..+|++++.+|.+..++....+++|++|.+..
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~ 554 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQR 554 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEee
Confidence 47999999999999999998888888888888778888888899999999999999999999999999999999999
Q ss_pred Cc--cccCCCCchhhhcCCcceEEecCCC----CCCccccCcccCCEEecCCCCCCccchhhhcCCCCcEeecccccccc
Q 002863 536 NY--FKNDKVNYHFFKSMASLRVLKLSHS----DLPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLS 609 (873)
Q Consensus 536 n~--l~~~~~~~~~~~~l~~Lr~L~L~~n----~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~ 609 (873)
|. +..++ ..+|..++.|++|||++| +||++|++|.|||||+|+++.+..+|.++++|.+|.+|++..+..+.
T Consensus 555 n~~~l~~is--~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 555 NSDWLLEIS--GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred cchhhhhcC--HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc
Confidence 96 77777 788999999999999988 78999999999999999999999999999999999999999997666
Q ss_pred ccChhhhCCCcccceEeccccC-CCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCcc
Q 002863 610 RISPQVISNLKMLRVLRMFECG-SFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFT 688 (873)
Q Consensus 610 ~l~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 688 (873)
.+ ++.+..|++|++|.+.... ........++.+|++|+.+.+...+...+..+.....+.. ..+.+.+.++.. ...
T Consensus 633 ~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~-~~~~l~~~~~~~-~~~ 709 (889)
T KOG4658|consen 633 SI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRS-LLQSLSIEGCSK-RTL 709 (889)
T ss_pred cc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHH-HhHhhhhccccc-cee
Confidence 66 4557779999999998643 3445677888889999988886554422233322222111 233344333332 234
Q ss_pred ccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccc-cCCCcCcccccCCCcEEeeccCccchh
Q 002863 689 IFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHS-KLRQVTWLILAPNLKHLEVQNCPYMEE 767 (873)
Q Consensus 689 ~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~l~~l~~l~~L~~L~L~~~~~~~~ 767 (873)
+..+..+.+|+.|.+.+|...+. ...+....... ..++++..+.+.+| ....+.|....|+|+.|.+..|...++
T Consensus 710 ~~~~~~l~~L~~L~i~~~~~~e~-~~~~~~~~~~~---~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 710 ISSLGSLGNLEELSILDCGISEI-VIEWEESLIVL---LCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred ecccccccCcceEEEEcCCCchh-hcccccccchh---hhHHHHHHHHhhccccccccchhhccCcccEEEEeccccccc
Confidence 44678899999999999876542 22333211110 13667888888888 777777888889999999999999888
Q ss_pred hcccCccccccccccccccccccccee-cccCcccccccccCCCCCCCccEEeEccCcCcccCcCCCcCCCC---cceEE
Q 002863 768 IINIGKLGEVPAEVMENLTPFARLEYL-ILKGLNNLKNICSNALPFPRLKEMSVHECSKLRQLALDCNCGLE---RKIII 843 (873)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~L~~L-~L~~~~~L~~l~~~~~~~~~L~~L~l~~c~~L~~L~l~~n~~l~---~l~~~ 843 (873)
+++....... .......|+++..+ .+.+.+.++.+.....++++|+.+.+..||+|..+|........ .....
T Consensus 786 ~i~~~k~~~~---l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~ 862 (889)
T KOG4658|consen 786 IIPKLKALLE---LKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKE 862 (889)
T ss_pred CCCHHHHhhh---cccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceee
Confidence 7653221110 00123456777777 57777888888877788899999999999999999997655422 23334
Q ss_pred echHHHhhhcccCchhhhhcc
Q 002863 844 EAEERWWKQLQWDDQATQNAF 864 (873)
Q Consensus 844 ~~~~~~~~~l~~~~~~~~~~~ 864 (873)
.-+..|.+.++|+++..+..|
T Consensus 863 ~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 863 YPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred cCCccceeeEEehhhhhhhhc
Confidence 445668889999999888776
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.4e-63 Score=610.73 Aligned_cols=623 Identities=19% Similarity=0.273 Sum_probs=430.0
Q ss_pred CcccchhHHHHHHHHHHh--cCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEe---CCc-----------
Q 002863 144 PTVVGLQLTFDRVWRCLM--EEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV---SRD----------- 207 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s~~----------- 207 (873)
+.+|||+..++++..+|. .+++++|+||||||+||||||+++|+.. ...|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 468999999999998875 3578999999999999999999999987 678898888742 111
Q ss_pred cc-HHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccch
Q 002863 208 LQ-LEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREF 286 (873)
Q Consensus 208 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~ 286 (873)
++ ...+++.++.++...... .... ...+++.++++|+||||||||+...|+.+....... +.||+||||||+.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~-~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~-~~GsrIIiTTrd~ 334 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDI-KIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWF-GSGSRIIVITKDK 334 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCc-ccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccC-CCCcEEEEEeCcH
Confidence 01 123444444443221100 1111 245678899999999999999998898887655444 7899999999999
Q ss_pred hhhhccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHH
Q 002863 287 EVCGQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAMASRKTPREWEHAIE 366 (873)
Q Consensus 287 ~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~ 366 (873)
+++..++..+.|+++.+++++||+||+++||... ..+.++.+++++|+++|+|+|||++++|++|++ ++..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9998777788999999999999999999999765 234568899999999999999999999999997 47899999999
Q ss_pred HHHchhcccCCchhHHHHHhhhccccCCcchhHHHHhhhccCCCCccccHHHHHHHHHHcCCccCCChhhHHHHHHHHHH
Q 002863 367 VLRSSASKFAGMEKRVFSRLKFSFDFLPSDATRFCLLYCTLFPEDYRISIEDLIDCWICEGFLDDHDGIEARNQGYSLIR 446 (873)
Q Consensus 367 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~l~ 446 (873)
.++... +.++..+|++||+.|+++..|.||+++|+|+.++.++ .+..|++.+.+... ..++
T Consensus 413 ~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~----------~~l~ 473 (1153)
T PLN03210 413 RLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN----------IGLK 473 (1153)
T ss_pred HHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch----------hChH
Confidence 887642 3589999999999998756899999999999887664 36778887755322 2388
Q ss_pred HHHHccccccccCCceEEEeeeechhhhhhhccC--CccceEEEEc---------CCCcccC-----------------C
Q 002863 447 NLLHACLLEEEKDNSVKMHYVVRDMALWIASTMD--NKKEKFLVLT---------GAGLTEA-----------------P 498 (873)
Q Consensus 447 ~L~~~~ll~~~~~~~~~mHdlv~~~a~~i~~~~~--~~~~~~~~~~---------~~~~~~~-----------------~ 498 (873)
.|++++|++.. .+.+.|||++|++|+.++++.. +.+..++... +.+...+ .
T Consensus 474 ~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~ 552 (1153)
T PLN03210 474 NLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHEN 552 (1153)
T ss_pred HHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHH
Confidence 99999999876 4679999999999999986532 1222333211 0000000 0
Q ss_pred ccccc-------------------------------cceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchh
Q 002863 499 SVGMW-------------------------------KDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHF 547 (873)
Q Consensus 499 ~~~~~-------------------------------~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 547 (873)
.+..+ .++|.|.+.++.+..+|....+.+|+.|++.+|.+..++ ..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~---~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLW---DG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccc---cc
Confidence 01112 245555555555566665555667777777777666654 22
Q ss_pred hhcCCcceEEecCCC----CCCccccCcccCCEEecCCC-CCCccchhhhcCCCCcEeeccccccccccChhhhCCCccc
Q 002863 548 FKSMASLRVLKLSHS----DLPCEISNLVSLQYLDLSNS-IPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKML 622 (873)
Q Consensus 548 ~~~l~~Lr~L~L~~n----~lp~~i~~L~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L 622 (873)
+..+++|++|+|++| .+| .++.+++|++|+|++| .+..+|..++++++|++|++++|..++.+|.. + ++++|
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL 706 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSL 706 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCC
Confidence 466777777777765 234 4666777777777764 56677777777777777777777677777764 2 67777
Q ss_pred ceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHh--------------------------hccCCCccCCcce
Q 002863 623 RVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRL--------------------------LSSSRFQSISIPS 676 (873)
Q Consensus 623 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~--------------------------~~~~~~~~~~L~~ 676 (873)
++|++++|.... ..+. ...+|+.|+++.+....++.. .+.......+|+.
T Consensus 707 ~~L~Lsgc~~L~-~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 707 YRLNLSGCSRLK-SFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CEEeCCCCCCcc-cccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 777777763221 1111 123444454432221111100 0000011125666
Q ss_pred EEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccc-cCCCcCcccccCCCc
Q 002863 677 LCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHS-KLRQVTWLILAPNLK 755 (873)
Q Consensus 677 L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~l~~l~~l~~L~ 755 (873)
|++++|.....+|..+.++++|+.|+|++|+.++.+ |.. ..+++|+.|++++| .+..+|.. .++|+
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L-P~~----------~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~ 849 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL-PTG----------INLESLESLDLSGCSRLRTFPDI--STNIS 849 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee-CCC----------CCccccCEEECCCCCcccccccc--ccccC
Confidence 666666555555666666666666666666655532 111 13566666666666 55554432 35666
Q ss_pred EEeeccCccchhhcccCcccccccccccccccccccceecccCcccccccccCCCCCCCccEEeEccCcCcccCcCCCc
Q 002863 756 HLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSNALPFPRLKEMSVHECSKLRQLALDCN 834 (873)
Q Consensus 756 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~l~~c~~L~~L~l~~n 834 (873)
.|+|++|.+. .++..+..+++|+.|+|++|++|+.++.....+++|+.+++.+|++|+.+++..+
T Consensus 850 ~L~Ls~n~i~--------------~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~ 914 (1153)
T PLN03210 850 DLNLSRTGIE--------------EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGS 914 (1153)
T ss_pred EeECCCCCCc--------------cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCC
Confidence 6666665442 1233567899999999999999999998888899999999999999998877543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.7e-46 Score=394.41 Aligned_cols=282 Identities=35% Similarity=0.645 Sum_probs=232.9
Q ss_pred hhHHHHHHHHHHhc--CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCc
Q 002863 149 LQLTFDRVWRCLME--EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNE 226 (873)
Q Consensus 149 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 226 (873)
||.++++|.++|.+ ++.++|+|+||||+||||||++++++. ..+.+|+.++|+.++...+...+++.|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 789999999999999999999999996 468999999999999999999999999999998754
Q ss_pred cc-cccCHHHHHHHHHHHhccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhhhcccc-ccceeeccCC
Q 002863 227 SW-KNKSMQEKAQQIFNILSKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVCGQMEA-HRSFKVECLR 304 (873)
Q Consensus 227 ~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l~~L~ 304 (873)
.. ...+.++....+.+.++++++||||||||+...|+.+...++.. ..|++||||||+..++..+.. ...|++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~-~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSF-SSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCH-HSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 33 55678889999999999999999999999999999988877766 678999999999999887764 6789999999
Q ss_pred hhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHHHHHchhcccCCchhHHHH
Q 002863 305 YDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAMASRKTPREWEHAIEVLRSSASKFAGMEKRVFS 384 (873)
Q Consensus 305 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~ 384 (873)
++||++||++.++.......+.+++++++|+++|+|+|||++++|++|+.+.+..+|+.+++.+........+....++.
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999986653334566778999999999999999999999977668899999998888776544444578999
Q ss_pred HhhhccccCCcchhHHHHhhhccCCCCccccHHHHHHHHHHcCCccCCC
Q 002863 385 RLKFSFDFLPSDATRFCLLYCTLFPEDYRISIEDLIDCWICEGFLDDHD 433 (873)
Q Consensus 385 ~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~aeg~i~~~~ 433 (873)
++.+||+.||+ ++|.||+|||+||+++.|+++.|+++|++||||...+
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 99999999999 8999999999999999999999999999999998653
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=3.7e-26 Score=238.99 Aligned_cols=334 Identities=21% Similarity=0.276 Sum_probs=253.9
Q ss_pred EEEEcCCCcccCCcccccc-ceEEEEeecccccccccc--CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC
Q 002863 486 FLVLTGAGLTEAPSVGMWK-DVTRMSLMDNKIKRLTVS--PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS 562 (873)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n 562 (873)
-+....+.++.+|.++... ++.+|++..|.|.++... ..++.||+|||+.|.++.++ ...|..-.++++|+|++|
T Consensus 106 ~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~--~~sfp~~~ni~~L~La~N 183 (873)
T KOG4194|consen 106 EVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIP--KPSFPAKVNIKKLNLASN 183 (873)
T ss_pred eeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhccc--CCCCCCCCCceEEeeccc
Confidence 3445566677777766544 588999988888876543 66788899999999888888 666777788999999998
Q ss_pred CC----CccccCcccCCEEecCCCCCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhh
Q 002863 563 DL----PCEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSL 637 (873)
Q Consensus 563 ~l----p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~ 637 (873)
.| ...|.+|.+|.+|.|++|.+..+|.- |.+|++|+.|+|..| .+..+-.-+|..|++|+.|.+..|. +..-.
T Consensus 184 ~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~-I~kL~ 261 (873)
T KOG4194|consen 184 RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRND-ISKLD 261 (873)
T ss_pred cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcC-ccccc
Confidence 66 45778888899999999999998864 666999999999888 7776655568888999988888752 33333
Q ss_pred HHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccc
Q 002863 638 VEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACA 717 (873)
Q Consensus 638 ~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 717 (873)
-+.+-.+.+++.|++ ..+.+..+...+.+....|+.|+|++|.+....+..+..+++|+.|+|++ |.++.+.+..+
T Consensus 262 DG~Fy~l~kme~l~L---~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf 337 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNL---ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSF 337 (873)
T ss_pred Ccceeeecccceeec---ccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhHH
Confidence 345667888888888 55566666667777777899999999998888888888889999999998 66776665555
Q ss_pred cccccccCccccccccEEEEccccCCCcC--cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceec
Q 002863 718 GEMKKIREIHGFHSLQNVYISHSKLRQVT--WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLI 795 (873)
Q Consensus 718 ~~~~~~~~~~~l~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 795 (873)
..+..|+.|.|++|+++.+. .+..+++|+.|+|++|.+.-.+-. ....+.++|+|+.|.
T Consensus 338 ---------~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED----------aa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 338 ---------RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED----------AAVAFNGLPSLRKLR 398 (873)
T ss_pred ---------HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec----------chhhhccchhhhhee
Confidence 56889999999999998884 778899999999999987543321 123566799999999
Q ss_pred ccCcccccccccC-CCCCCCccEEeEccCc------------CcccCcCCCcCCCCcceEEechHHHhhh
Q 002863 796 LKGLNNLKNICSN-ALPFPRLKEMSVHECS------------KLRQLALDCNCGLERKIIIEAEERWWKQ 852 (873)
Q Consensus 796 L~~~~~L~~l~~~-~~~~~~L~~L~l~~c~------------~L~~L~l~~n~~l~~l~~~~~~~~~~~~ 852 (873)
|.| ++++.++.. ...++.|+.|++.+.+ +|++|-+...+ ..++|.-.|+-+
T Consensus 399 l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSss-----flCDCql~Wl~q 462 (873)
T KOG4194|consen 399 LTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSS-----FLCDCQLKWLAQ 462 (873)
T ss_pred ecC-ceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccc-----eEEeccHHHHHH
Confidence 999 889999874 4568888888877543 34444443333 457888777654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=2e-23 Score=259.43 Aligned_cols=336 Identities=22% Similarity=0.232 Sum_probs=216.9
Q ss_pred ceEEEEcCCCcc-cCCc--cccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecC
Q 002863 484 EKFLVLTGAGLT-EAPS--VGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLS 560 (873)
Q Consensus 484 ~~~~~~~~~~~~-~~~~--~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~ 560 (873)
-+.+..+++.+. .+|. ...++++++|++++|.+....+...+++|++|++++|.+.... +..+.++++|++|+|+
T Consensus 95 L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~ 172 (968)
T PLN00113 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEI--PNDIGSFSSLKVLDLG 172 (968)
T ss_pred CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccC--ChHHhcCCCCCEEECc
Confidence 344555555443 2332 1245677888887777765434455777888888888776544 4557788888888888
Q ss_pred CC----CCCccccCcccCCEEecCCCCCC-ccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCch
Q 002863 561 HS----DLPCEISNLVSLQYLDLSNSIPD-RLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLD 635 (873)
Q Consensus 561 ~n----~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~ 635 (873)
+| .+|..++++++|++|+|++|.+. .+|..++++++|++|++++| .+....+..++++++|++|++++| ...+
T Consensus 173 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n-~l~~ 250 (968)
T PLN00113 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN-NLSGEIPYEIGGLTSLNHLDLVYN-NLTG 250 (968)
T ss_pred cCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC-ccCCcCChhHhcCCCCCEEECcCc-eecc
Confidence 87 34777788888888888877553 56777888888888888887 555333334788888888888775 3444
Q ss_pred hhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeec
Q 002863 636 SLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIA 715 (873)
Q Consensus 636 ~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 715 (873)
..+..++++++|+.|+++.+. +....+.......+|+.|++++|.+.+..|..+..+++|+.|++++| .+++..+.
T Consensus 251 ~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n-~~~~~~~~ 326 (968)
T PLN00113 251 PIPSSLGNLKNLQYLFLYQNK---LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN-NFTGKIPV 326 (968)
T ss_pred ccChhHhCCCCCCEEECcCCe---eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC-ccCCcCCh
Confidence 566777788888888775332 22222222222336788888888777777777777788888888774 34333333
Q ss_pred cccccccccCccccccccEEEEccccCCC-cC-cccccCCCcEEeeccCccchhhcccC----cc-------cccccccc
Q 002863 716 CAGEMKKIREIHGFHSLQNVYISHSKLRQ-VT-WLILAPNLKHLEVQNCPYMEEIINIG----KL-------GEVPAEVM 782 (873)
Q Consensus 716 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-l~-~l~~l~~L~~L~L~~~~~~~~~~~~~----~~-------~~~~~~~~ 782 (873)
.+ ..+++|+.|++++|.++. +| .++.+++|+.|++++|.....++..- .. ..+....+
T Consensus 327 ~~---------~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p 397 (968)
T PLN00113 327 AL---------TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397 (968)
T ss_pred hH---------hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC
Confidence 33 457778888888886653 33 56777888888888776654332200 00 00001122
Q ss_pred cccccccccceecccCcccccccccCCCCCCCccEEeEcc-------------CcCcccCcCCCcCC
Q 002863 783 ENLTPFARLEYLILKGLNNLKNICSNALPFPRLKEMSVHE-------------CSKLRQLALDCNCG 836 (873)
Q Consensus 783 ~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~l~~-------------c~~L~~L~l~~n~~ 836 (873)
..+..+++|+.|++++|+--..++.....+++|+.|++++ +++|+.|.+++|..
T Consensus 398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence 3456678888888888654445555556688888888763 56777888887763
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.9e-24 Score=226.24 Aligned_cols=318 Identities=19% Similarity=0.223 Sum_probs=244.4
Q ss_pred EEEcCCCcccCC--ccccccceEEEEeeccccccccccCC-CCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC
Q 002863 487 LVLTGAGLTEAP--SVGMWKDVTRMSLMDNKIKRLTVSPT-SPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD 563 (873)
Q Consensus 487 ~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~l~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~ 563 (873)
+..+++.+..+. .+.++.+++.+++..|.+..+|.... ..+|+.|+|.+|.|+.+. ...+..++.||.||||.|.
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~--se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVT--SEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecccccccc--HHHHHhHhhhhhhhhhhch
Confidence 344555554442 23566788888888888888887644 455999999999988888 7778889999999999993
Q ss_pred ---CC-ccccCcccCCEEecCCCCCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhH
Q 002863 564 ---LP-CEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLV 638 (873)
Q Consensus 564 ---lp-~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~ 638 (873)
+| .++..-.++++|+|++|.|+.+-.. |..+.+|.+|.|+.| +++.+|...|.+|++|+.|++..|. +.....
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~-irive~ 238 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNR-IRIVEG 238 (873)
T ss_pred hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccc-eeeehh
Confidence 33 3566667899999999999988754 888899999999999 8999999999999999999998752 332334
Q ss_pred HHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecccc
Q 002863 639 EELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAG 718 (873)
Q Consensus 639 ~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 718 (873)
..+.+|++|+.|.+ ..+.+..+....+....++++|+|..|++......++-+++.|+.|++++ |.+..+.++..
T Consensus 239 ltFqgL~Sl~nlkl---qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~W- 313 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKL---QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSW- 313 (873)
T ss_pred hhhcCchhhhhhhh---hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch-hhhheeecchh-
Confidence 45778888888888 55666666667777777899999999999888878899999999999998 66665544433
Q ss_pred ccccccCccccccccEEEEccccCCCcC--cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecc
Q 002863 719 EMKKIREIHGFHSLQNVYISHSKLRQVT--WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLIL 796 (873)
Q Consensus 719 ~~~~~~~~~~l~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 796 (873)
...++|+.|+|++|+++.++ .+..|..|+.|+|++|.+.. +-. ..+.++.+|+.|+|
T Consensus 314 --------sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e------------~af~~lssL~~LdL 372 (873)
T KOG4194|consen 314 --------SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAE------------GAFVGLSSLHKLDL 372 (873)
T ss_pred --------hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHh------------hHHHHhhhhhhhcC
Confidence 57889999999999999985 67889999999999997642 211 35677899999999
Q ss_pred cCccccccccc----CCCCCCCccEEeEc-------------cCcCcccCcCCCcC
Q 002863 797 KGLNNLKNICS----NALPFPRLKEMSVH-------------ECSKLRQLALDCNC 835 (873)
Q Consensus 797 ~~~~~L~~l~~----~~~~~~~L~~L~l~-------------~c~~L~~L~l~~n~ 835 (873)
++ +.+..... ....+|+|++|.+. +.+.|..|+++.|.
T Consensus 373 r~-N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 373 RS-NELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cC-CeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 98 55543322 23348888888875 45566666666664
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=5.8e-23 Score=255.28 Aligned_cols=332 Identities=20% Similarity=0.258 Sum_probs=210.5
Q ss_pred ceEEEEcCCCcccCCccccccceEEEEeecccccc-ccc-cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCC
Q 002863 484 EKFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKR-LTV-SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSH 561 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~ 561 (873)
-..+..+++.+........++++++|++++|.+.. ++. ...+++|++|++++|.+.... +..|.++++|++|+|++
T Consensus 120 L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 120 LRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI--PNSLTNLTSLEFLTLAS 197 (968)
T ss_pred CCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC--ChhhhhCcCCCeeeccC
Confidence 34455555554433223456678888888887753 332 356778888888888766544 45677888888888887
Q ss_pred CC----CCccccCcccCCEEecCCCCCC-ccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchh
Q 002863 562 SD----LPCEISNLVSLQYLDLSNSIPD-RLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDS 636 (873)
Q Consensus 562 n~----lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~ 636 (873)
|. +|..++++++|++|+|++|.+. .+|..++++++|++|++++| .+....+..++++++|++|++++| .+.+.
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~ 275 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQN-KLSGP 275 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCC-eeecc
Confidence 73 4777788888888888877654 57777888888888888887 555433344778888888888765 34445
Q ss_pred hHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecc
Q 002863 637 LVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIAC 716 (873)
Q Consensus 637 ~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 716 (873)
.+..+.++++|+.|+++.+. +....+.......+|+.|++++|.+.+..|..+..+++|+.|++++|. +++..|..
T Consensus 276 ~p~~l~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~ 351 (968)
T PLN00113 276 IPPSIFSLQKLISLDLSDNS---LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK-FSGEIPKN 351 (968)
T ss_pred CchhHhhccCcCEEECcCCe---eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC-CcCcCChH
Confidence 56667777777777775332 222222222223366777777776666666666666777777776643 33223333
Q ss_pred cccccc---------------ccCccccccccEEEEccccCCC-cC-cccccCCCcEEeeccCccchhhcccCccccccc
Q 002863 717 AGEMKK---------------IREIHGFHSLQNVYISHSKLRQ-VT-WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPA 779 (873)
Q Consensus 717 ~~~~~~---------------~~~~~~l~~L~~L~L~~~~l~~-l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 779 (873)
++.... +..+..+++|+.|++++|.++. +| .+..+++|+.|++++|.....++
T Consensus 352 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p---------- 421 (968)
T PLN00113 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP---------- 421 (968)
T ss_pred HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC----------
Confidence 321100 0112344566666666665543 22 45667777777777776653322
Q ss_pred ccccccccccccceecccCcccccccccCCCCCCCccEEeEccCc------------CcccCcCCCcCC
Q 002863 780 EVMENLTPFARLEYLILKGLNNLKNICSNALPFPRLKEMSVHECS------------KLRQLALDCNCG 836 (873)
Q Consensus 780 ~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~l~~c~------------~L~~L~l~~n~~ 836 (873)
..+..+++|+.|+++++.-...++.....+++|+.|++++|. +|+.|++++|..
T Consensus 422 ---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 422 ---SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF 487 (968)
T ss_pred ---hhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc
Confidence 256789999999999955434444445578999999998774 567777777753
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.8e-25 Score=235.06 Aligned_cols=328 Identities=23% Similarity=0.315 Sum_probs=236.1
Q ss_pred ceEEEEcCCCcccCCc-cccccceEEEEeeccccccccc-cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCC
Q 002863 484 EKFLVLTGAGLTEAPS-VGMWKDVTRMSLMDNKIKRLTV-SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSH 561 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~ 561 (873)
-.++.....++..+|. .+.+.++.||++..|++..+.. ...+|.||++.+..|++.+...++++| .+..|.+||||+
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecch
Confidence 4677777777777764 4567799999999999887654 478999999999999975543325555 799999999999
Q ss_pred C---CCCccccCcccCCEEecCCCCCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhh
Q 002863 562 S---DLPCEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSL 637 (873)
Q Consensus 562 n---~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~ 637 (873)
| ..|..+..-+++-+|+||+|+|+.+|.. +-+|+.|-+||||+| ++..+||. +.+|.+|++|.++++ .+....
T Consensus 113 NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~N-PL~hfQ 189 (1255)
T KOG0444|consen 113 NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNN-PLNHFQ 189 (1255)
T ss_pred hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCC-hhhHHH
Confidence 9 5599999999999999999999999977 679999999999999 99999998 999999999999985 455556
Q ss_pred HHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccc
Q 002863 638 VEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACA 717 (873)
Q Consensus 638 ~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 717 (873)
...+.++++|++|.++.... .+..++..... ..+|..++++.|.+. ..|..+-++++|+.|+|++ |.++.+... .
T Consensus 190 LrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~-l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~-N~iteL~~~-~ 264 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDD-LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSG-NKITELNMT-E 264 (1255)
T ss_pred HhcCccchhhhhhhcccccc-hhhcCCCchhh-hhhhhhccccccCCC-cchHHHhhhhhhheeccCc-Cceeeeecc-H
Confidence 77777888888888864332 12222222211 227888899888764 5667888899999999998 566643211 1
Q ss_pred cccccccCccccccccEEEEccccCCCcC-cccccCCCcEEeeccCccchhh-cc-cCccccc---------cccccccc
Q 002863 718 GEMKKIREIHGFHSLQNVYISHSKLRQVT-WLILAPNLKHLEVQNCPYMEEI-IN-IGKLGEV---------PAEVMENL 785 (873)
Q Consensus 718 ~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~~~~~-~~-~~~~~~~---------~~~~~~~~ 785 (873)
....+|++|+++.|+++.+| .+..++.|+.|.+.+|...-+- |+ ++.++.+ -.-++..+
T Consensus 265 ---------~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEgl 335 (1255)
T KOG0444|consen 265 ---------GEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGL 335 (1255)
T ss_pred ---------HHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhh
Confidence 34567888888888888876 5677788888877777653211 10 0000000 00123355
Q ss_pred ccccccceecccCcccccccccCCCCCCCccEEeEccCcCcccCc
Q 002863 786 TPFARLEYLILKGLNNLKNICSNALPFPRLKEMSVHECSKLRQLA 830 (873)
Q Consensus 786 ~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~l~~c~~L~~L~ 830 (873)
+.|++|+.|.|+. +.|-.+|....-+|.|+.|++...|+|..-|
T Consensus 336 cRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 6666777777644 6666666666666777777777777666433
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.9e-23 Score=219.97 Aligned_cols=300 Identities=22% Similarity=0.283 Sum_probs=236.3
Q ss_pred ccccceEEEEeecccccccccc-CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC-----CCCccccCcccC
Q 002863 501 GMWKDVTRMSLMDNKIKRLTVS-PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS-----DLPCEISNLVSL 574 (873)
Q Consensus 501 ~~~~~l~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n-----~lp~~i~~L~~L 574 (873)
..++.++.|.+....+..+|.. ..+.+|+.|.+.+|.+..+. +-+..++.||.+++..| .+|..|..|..|
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh---GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH---GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh---hhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence 4467889999988888888754 77899999999999988876 45789999999999988 569999999999
Q ss_pred CEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEE
Q 002863 575 QYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITL 654 (873)
Q Consensus 575 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 654 (873)
.+||||+|.+.+.|..+.+.+++-.|+||+| ++..+|...+.+|+.|-.|+++++. ....|..+..|.+|++|.++.
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~Nr--Le~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNR--LEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccch--hhhcCHHHHHHhhhhhhhcCC
Confidence 9999999999999999999999999999999 8999999999999999999999853 456788899999999999976
Q ss_pred cchhhHHHhhccCCCccCCcceEEecCCCC-CCccccccccccccceEEeecCCCCcceeeccccccccccCcccccccc
Q 002863 655 HSNHALQRLLSSSRFQSISIPSLCLRGCRL-EPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQ 733 (873)
Q Consensus 655 ~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~ 733 (873)
+..+.++ + ...-...+|+.|.+++.+- ...+|.++..+.+|..++++. |.+.. .|+.+ -.+++|+
T Consensus 183 NPL~hfQ-L--rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~-vPecl---------y~l~~Lr 248 (1255)
T KOG0444|consen 183 NPLNHFQ-L--RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPI-VPECL---------YKLRNLR 248 (1255)
T ss_pred ChhhHHH-H--hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCc-chHHH---------hhhhhhh
Confidence 5544322 1 1111122688888888753 345677899999999999997 55543 55555 5689999
Q ss_pred EEEEccccCCCcC-cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcccc--cccccCCC
Q 002863 734 NVYISHSKLRQVT-WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNL--KNICSNAL 810 (873)
Q Consensus 734 ~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L--~~l~~~~~ 810 (873)
.|+|++|.++.+. ..+...+|+.|++|.|+... ++..+..+++|+.|.+.+ ++| +.+|.+.+
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~--------------LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLSRNQLTV--------------LPDAVCKLTKLTKLYANN-NKLTFEGIPSGIG 313 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccccchhcc--------------chHHHhhhHHHHHHHhcc-CcccccCCccchh
Confidence 9999999999985 56778899999999998652 233566677777777765 433 45666655
Q ss_pred CCCCccEEe------------EccCcCcccCcCCCcC
Q 002863 811 PFPRLKEMS------------VHECSKLRQLALDCNC 835 (873)
Q Consensus 811 ~~~~L~~L~------------l~~c~~L~~L~l~~n~ 835 (873)
.+..|+.+. +..|++|+.|.++.|+
T Consensus 314 KL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 314 KLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred hhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc
Confidence 555554432 3467777777777776
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=8.9e-19 Score=217.64 Aligned_cols=304 Identities=22% Similarity=0.269 Sum_probs=222.6
Q ss_pred ceEEEEcCCCcccCCccccccceEEEEeecccccccccc-CCCCcccEEEecCCc-cccCCCCchhhhcCCcceEEecCC
Q 002863 484 EKFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVS-PTSPRLLTLFLNSNY-FKNDKVNYHFFKSMASLRVLKLSH 561 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~~l~~Lr~L~L~~ 561 (873)
-.++...+..++..|....+.+++.|++.++.+..++.. ..+++|+.|+|+++. +..+| . +..+++|+.|+|++
T Consensus 591 Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~--ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--D--LSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC--c--cccCCcccEEEecC
Confidence 455666666777777766778999999999999888654 678999999999876 55565 2 67899999999999
Q ss_pred C----CCCccccCcccCCEEecCCC-CCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchh
Q 002863 562 S----DLPCEISNLVSLQYLDLSNS-IPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDS 636 (873)
Q Consensus 562 n----~lp~~i~~L~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~ 636 (873)
| .+|.+++++++|++|++++| .++.+|..+ ++++|++|++++|..+..+|. ..++|+.|++.++. +. .
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~-i~-~ 739 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETA-IE-E 739 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCc-cc-c
Confidence 8 57999999999999999975 788999876 799999999999977776664 24567777777642 11 1
Q ss_pred hHHHh------------------------------cCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCC
Q 002863 637 LVEEL------------------------------LGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEP 686 (873)
Q Consensus 637 ~~~~l------------------------------~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~ 686 (873)
.|..+ ...++|+.|+++.+. .+..+ +.......+|+.|++++|....
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~--~l~~l-P~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP--SLVEL-PSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC--Ccccc-ChhhhCCCCCCEEECCCCCCcC
Confidence 11111 112345555553221 11111 1122334489999999997666
Q ss_pred ccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcC-cccccCCCcEEeeccCccc
Q 002863 687 FTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT-WLILAPNLKHLEVQNCPYM 765 (873)
Q Consensus 687 ~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~~ 765 (873)
.+|..+ .+++|+.|++++|+.+..+ | ...++|+.|+|++|.++.+| ++..+++|+.|+|++|+.+
T Consensus 817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~-p------------~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 817 TLPTGI-NLESLESLDLSGCSRLRTF-P------------DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred eeCCCC-CccccCEEECCCCCccccc-c------------ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCc
Confidence 666555 6899999999999877642 1 12468999999999999987 7888999999999999888
Q ss_pred hhhcccCcccccccccccccccccccceecccCcccccccccCC-------------CCCCCccEEeEccCcCccc
Q 002863 766 EEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSNA-------------LPFPRLKEMSVHECSKLRQ 828 (873)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~-------------~~~~~L~~L~l~~c~~L~~ 828 (873)
+.++. ....+++|+.|++++|++|+.++... ..+|....+.+.+|.+|..
T Consensus 883 ~~l~~-------------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 883 QRVSL-------------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred CccCc-------------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 66533 45678999999999999998664322 1244556667788877763
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=2.5e-20 Score=187.51 Aligned_cols=243 Identities=25% Similarity=0.286 Sum_probs=178.2
Q ss_pred ccccccceEEEEeecccccccccc-CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCcccC
Q 002863 499 SVGMWKDVTRMSLMDNKIKRLTVS-PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNLVSL 574 (873)
Q Consensus 499 ~~~~~~~l~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L 574 (873)
....+..+..+.++.|....+|+. ..+..+..|+.++|++..+| ..+.++..|+.|+.++| .+|++|+.+..|
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp---~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l 139 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELP---EQIGSLISLVKLDCSSNELKELPDSIGRLLDL 139 (565)
T ss_pred hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhcc---HHHhhhhhhhhhhccccceeecCchHHHHhhh
Confidence 334455678888888888777654 56777888888888888777 44678888888888888 568888888888
Q ss_pred CEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEE
Q 002863 575 QYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITL 654 (873)
Q Consensus 575 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 654 (873)
..|+..+|++.++|.++.++.+|..|++.+| +++.+|+..+. ++.|++|+...+ ..+..|.+++.+.+|..|++.
T Consensus 140 ~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N--~L~tlP~~lg~l~~L~~LyL~- 214 (565)
T KOG0472|consen 140 EDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSN--LLETLPPELGGLESLELLYLR- 214 (565)
T ss_pred hhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchh--hhhcCChhhcchhhhHHHHhh-
Confidence 8888888888888888888888888888888 78888887554 888888887653 456678888888888888874
Q ss_pred cchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccE
Q 002863 655 HSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQN 734 (873)
Q Consensus 655 ~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~ 734 (873)
.+.+..++.+ ..+..|.+|++..|++.........++++|..|++.+ |+++. .|+.+ ..+.+|..
T Consensus 215 --~Nki~~lPef--~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke-~Pde~---------clLrsL~r 279 (565)
T KOG0472|consen 215 --RNKIRFLPEF--PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKE-VPDEI---------CLLRSLER 279 (565)
T ss_pred --hcccccCCCC--CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-ccccc-CchHH---------HHhhhhhh
Confidence 3333333321 1222577777777776655555566778888888887 55654 33333 45677888
Q ss_pred EEEccccCCCcC-cccccCCCcEEeeccCccc
Q 002863 735 VYISHSKLRQVT-WLILAPNLKHLEVQNCPYM 765 (873)
Q Consensus 735 L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~~ 765 (873)
|++++|.++.+| .++++ .|+.|.+.+|+..
T Consensus 280 LDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 280 LDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 888888888775 67777 7888888887643
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=1.7e-19 Score=181.59 Aligned_cols=304 Identities=23% Similarity=0.265 Sum_probs=181.8
Q ss_pred CccccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCcccC
Q 002863 498 PSVGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNLVSL 574 (873)
Q Consensus 498 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L 574 (873)
|..+.++++..|++..|.+..+|....|+.|..|++..|.++.+| ....+++.+|.+|||..| .+|+.++.|++|
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lp--ae~~~~L~~l~vLDLRdNklke~Pde~clLrsL 277 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLP--AEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSL 277 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhH--HHHhcccccceeeeccccccccCchHHHHhhhh
Confidence 345667788888888999999998889999999999999888888 677788999999999999 558899999999
Q ss_pred CEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCc--ccceEecc----c---c--C-----CCchhhH
Q 002863 575 QYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLK--MLRVLRMF----E---C--G-----SFLDSLV 638 (873)
Q Consensus 575 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~--~L~~L~l~----~---~--~-----~~~~~~~ 638 (873)
.+||+|||.|..+|.+++++ +|+.|-+.|| .+..+-.+.+.+-+ -|++|.-. + . . .......
T Consensus 278 ~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~ 355 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF 355 (565)
T ss_pred hhhcccCCccccCCcccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence 99999999999999999999 8999999888 66655544332211 12222210 0 0 0 0000111
Q ss_pred HHhcCCCCCceeEEEEcchhhHHHh-hccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccc
Q 002863 639 EELLGLEHLNVLTITLHSNHALQRL-LSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACA 717 (873)
Q Consensus 639 ~~l~~l~~L~~L~l~~~~~~~l~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 717 (873)
.....+.+.+.|+++......+..- .... ...-....+++.|++.. .|..+..+..+.+.-+..++.+. ..+..+
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt~VPdEVfea~--~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~is-fv~~~l 431 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLTLVPDEVFEAA--KSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKIS-FVPLEL 431 (565)
T ss_pred cchhhhhhhhhhcccccccccCCHHHHHHh--hhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccc-cchHHH
Confidence 1222334455555542222211110 0000 01125566777776543 23334444444333222323333 122222
Q ss_pred cccccccCccccccccEEEEccccCCCcC-cccccCCCcEEeeccCccchhhc--------------ccCcccccccccc
Q 002863 718 GEMKKIREIHGFHSLQNVYISHSKLRQVT-WLILAPNLKHLEVQNCPYMEEII--------------NIGKLGEVPAEVM 782 (873)
Q Consensus 718 ~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~~~~~~--------------~~~~~~~~~~~~~ 782 (873)
..+++|..|+|++|-+.++| -++.+..|+.|+|+.|++-. +| ...+.+.++.
T Consensus 432 ---------~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~--- 498 (565)
T KOG0472|consen 432 ---------SQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDP--- 498 (565)
T ss_pred ---------Hhhhcceeeecccchhhhcchhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccCh---
Confidence 45566666666666666655 45556666666666664321 11 1122233332
Q ss_pred cccccccccceecccCcccccccccCCCCCCCccEEeEccC
Q 002863 783 ENLTPFARLEYLILKGLNNLKNICSNALPFPRLKEMSVHEC 823 (873)
Q Consensus 783 ~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~l~~c 823 (873)
..+..+.+|..|++.+ +.+..+|...+.|.+|++|.+.+.
T Consensus 499 ~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCC
Confidence 2477889999999987 888888876555555555555443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=3.7e-16 Score=179.73 Aligned_cols=259 Identities=19% Similarity=0.150 Sum_probs=180.5
Q ss_pred cCCccceEEEEcCCCcccCCccccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEe
Q 002863 479 MDNKKEKFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLK 558 (873)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~ 558 (873)
|...+...+.+++.+++.+|. ..+.+++.|++..|+++.+|.. .++|++|++++|.++.+| . ..++|+.|+
T Consensus 198 Cl~~~~~~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP--~----lp~sL~~L~ 268 (788)
T PRK15387 198 CLNNGNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLP--V----LPPGLLELS 268 (788)
T ss_pred HhcCCCcEEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCccc--C----cccccceee
Confidence 333345677778888888776 3346899999999999998754 589999999999999887 2 247899999
Q ss_pred cCCCCCCccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhH
Q 002863 559 LSHSDLPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLV 638 (873)
Q Consensus 559 L~~n~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~ 638 (873)
+++|.+..--....+|+.|++++|.+..+|.. +++|+.|++++| .++.+|.. ..+|+.|++.+|. +. ..+
T Consensus 269 Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~-L~-~LP 338 (788)
T PRK15387 269 IFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQ-LT-SLP 338 (788)
T ss_pred ccCCchhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCc-cc-ccc
Confidence 99995421111235788999999999999864 578999999999 88888752 2457788887753 22 122
Q ss_pred HHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecccc
Q 002863 639 EELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAG 718 (873)
Q Consensus 639 ~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 718 (873)
. -..+|+.|+++.+ .+..+.... .+|..|++++|.+... |.. ..+|+.|++++| .++.+ |
T Consensus 339 ~---lp~~Lq~LdLS~N---~Ls~LP~lp----~~L~~L~Ls~N~L~~L-P~l---~~~L~~LdLs~N-~Lt~L-P---- 398 (788)
T PRK15387 339 T---LPSGLQELSVSDN---QLASLPTLP----SELYKLWAYNNRLTSL-PAL---PSGLKELIVSGN-RLTSL-P---- 398 (788)
T ss_pred c---cccccceEecCCC---ccCCCCCCC----cccceehhhccccccC-ccc---ccccceEEecCC-cccCC-C----
Confidence 1 1246888888543 333332211 2678888888887643 322 357888888874 45432 1
Q ss_pred ccccccCccccccccEEEEccccCCCcCcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccC
Q 002863 719 EMKKIREIHGFHSLQNVYISHSKLRQVTWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKG 798 (873)
Q Consensus 719 ~~~~~~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 798 (873)
..+++|+.|++++|.++.+|.+ +.+|+.|++++|.+. .+| ..+..+++|+.|+|++
T Consensus 399 --------~l~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt-~LP-------------~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 399 --------VLPSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLT-RLP-------------ESLIHLSSETTVNLEG 454 (788)
T ss_pred --------CcccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCccc-ccC-------------hHHhhccCCCeEECCC
Confidence 1235788899999988887743 357888888888764 222 2466788899999988
Q ss_pred cc
Q 002863 799 LN 800 (873)
Q Consensus 799 ~~ 800 (873)
++
T Consensus 455 N~ 456 (788)
T PRK15387 455 NP 456 (788)
T ss_pred CC
Confidence 43
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=9.5e-18 Score=186.14 Aligned_cols=264 Identities=24% Similarity=0.318 Sum_probs=148.0
Q ss_pred CCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCcccCCEEecCCCCCCccchhhhcCCCCcEee
Q 002863 525 SPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLN 601 (873)
Q Consensus 525 ~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 601 (873)
.++|+.|+.++|.++... . -..-.+|+++++++| .+|+.++.+.+|+.|+..+|.+..+|..+...++|+.|.
T Consensus 218 g~~l~~L~a~~n~l~~~~--~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLD--V--HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLS 293 (1081)
T ss_pred CcchheeeeccCcceeec--c--ccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHH
Confidence 356666666666665333 1 123456777777777 557777777777777777777777777777777777777
Q ss_pred ccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCC-CceeEEEEcchhhHHHhhccCCCccCCcceEEec
Q 002863 602 LEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEH-LNVLTITLHSNHALQRLLSSSRFQSISIPSLCLR 680 (873)
Q Consensus 602 L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~ 680 (873)
+.+| .++.+|+. ..++++|++|++..++ +.......+..+.. |+.|+.+ .+.+..+..........|+.|++.
T Consensus 294 ~~~n-el~yip~~-le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s---~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 294 AAYN-ELEYIPPF-LEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVS---SNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred hhhh-hhhhCCCc-ccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhh---hccccccccccchhhHHHHHHHHh
Confidence 7777 67777764 5667777777777642 11111111111111 2233321 111111111112222256677777
Q ss_pred CCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcC-cccccCCCcEEee
Q 002863 681 GCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT-WLILAPNLKHLEV 759 (873)
Q Consensus 681 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L 759 (873)
+|.+++.....+.++++|+.|+|++ |.+..+....+ ..+..|++|+|+||+++.+| .+..++.|++|..
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~---------~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKL---------RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred cCcccccchhhhccccceeeeeecc-cccccCCHHHH---------hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 7776665555666677777777776 44443222222 45666777777777777765 4556666666666
Q ss_pred ccCccchhhcccCcccccccccccccccccccceecccCcccccccccCCC-CCCCccEEeEccCc
Q 002863 760 QNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSNAL-PFPRLKEMSVHECS 824 (873)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~L~l~~c~ 824 (873)
.+|.+.. ++ .+..+|.|+.++++. ++|+.+..... +-|+|++|++++.+
T Consensus 438 hsN~l~~--------------fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 438 HSNQLLS--------------FP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cCCceee--------------ch-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCc
Confidence 6665431 11 345566667777644 66655443222 22455555554443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=2.3e-15 Score=174.60 Aligned_cols=239 Identities=21% Similarity=0.232 Sum_probs=142.6
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC--
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS-- 562 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n-- 562 (873)
.-+..++.+++.+|.. .++.++.|++++|.+..+|... +++|++|++++|.++.+| ..+ ..+|+.|+|++|
T Consensus 181 ~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP--~~l---~~~L~~L~Ls~N~L 253 (754)
T PRK15370 181 TELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIP--ATL---PDTIQEMELSINRI 253 (754)
T ss_pred eEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCC--hhh---hccccEEECcCCcc
Confidence 3445556666666642 3457888888888888877543 368888888888888777 332 247888888888
Q ss_pred -CCCccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHh
Q 002863 563 -DLPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEEL 641 (873)
Q Consensus 563 -~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l 641 (873)
.+|..+. .+|++|++++|.+..+|..+. .+|++|++++| .++.+|.. +. ++|++|++++|. +. ..+..+
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~-Lt-~LP~~l 323 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNS-LT-ALPETL 323 (754)
T ss_pred CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCc-cc-cCCccc
Confidence 4465554 478888888888888887664 57888888888 78887754 32 467778877752 22 122211
Q ss_pred cCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccc
Q 002863 642 LGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMK 721 (873)
Q Consensus 642 ~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 721 (873)
.++|+.|+++.+....+.. . . ..+|+.|++++|++.. +|..+. ++|+.|+|++| .++.+ |..+
T Consensus 324 --~~sL~~L~Ls~N~Lt~LP~---~--l-~~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N-~Lt~L-P~~l---- 386 (754)
T PRK15370 324 --PPGLKTLEAGENALTSLPA---S--L-PPELQVLDVSKNQITV-LPETLP--PTITTLDVSRN-ALTNL-PENL---- 386 (754)
T ss_pred --cccceeccccCCccccCCh---h--h-cCcccEEECCCCCCCc-CChhhc--CCcCEEECCCC-cCCCC-CHhH----
Confidence 1456666654332222211 1 0 1256666666666543 222222 45666666663 33332 2111
Q ss_pred cccCccccccccEEEEccccCCCcCc-----ccccCCCcEEeeccCcc
Q 002863 722 KIREIHGFHSLQNVYISHSKLRQVTW-----LILAPNLKHLEVQNCPY 764 (873)
Q Consensus 722 ~~~~~~~l~~L~~L~L~~~~l~~l~~-----l~~l~~L~~L~L~~~~~ 764 (873)
..+|+.|++++|+++.+|. ...++++..|+|.+|++
T Consensus 387 -------~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 387 -------PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred -------HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 1246666666666665541 22345666666666654
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=9.8e-17 Score=178.22 Aligned_cols=266 Identities=23% Similarity=0.253 Sum_probs=193.2
Q ss_pred cceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCcccCCEEecC
Q 002863 504 KDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNLVSLQYLDLS 580 (873)
Q Consensus 504 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L~~L~L~ 580 (873)
.++++|..+.|.+..+...+...+|+++++++|.++.+| +++..|.+|..|+..+| .+|..+....+|++|++.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp---~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP---EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA 295 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcch---HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh
Confidence 378888888888887666677789999999999998887 77899999999999999 568899999999999999
Q ss_pred CCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcc-cceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhh
Q 002863 581 NSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKM-LRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHA 659 (873)
Q Consensus 581 ~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 659 (873)
+|.++.+|.....++.|++|+|..| ++..+|+..+..+.. |+.|+.+.+. .....-.+=..++.|+.|.+.. +.
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~Lylan---N~ 370 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNK-LSTLPSYEENNHAALQELYLAN---NH 370 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhcc-ccccccccchhhHHHHHHHHhc---Cc
Confidence 9999999999999999999999999 899999876555544 6666554321 1110000001223344444422 22
Q ss_pred HHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEcc
Q 002863 660 LQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISH 739 (873)
Q Consensus 660 l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 739 (873)
+..-.........+|+.|+|++|.+..++...+.+++.|+.|+|++ |.++.+ |+.. ..++.|++|...+
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~L-p~tv---------a~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTL-PDTV---------ANLGRLHTLRAHS 439 (1081)
T ss_pred ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhh-hHHH---------HhhhhhHHHhhcC
Confidence 2211111112223789999999988877777788899999999999 666654 2333 5678888888888
Q ss_pred ccCCCcCcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCccc
Q 002863 740 SKLRQVTWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNN 801 (873)
Q Consensus 740 ~~l~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 801 (873)
|++..+|.+..++.|+.++++.|.+..-... ... .-|+|++|+++|+..
T Consensus 440 N~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~------------~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 440 NQLLSFPELAQLPQLKVLDLSCNNLSEVTLP------------EAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred CceeechhhhhcCcceEEecccchhhhhhhh------------hhC-CCcccceeeccCCcc
Confidence 8888888888889999999988876543321 111 127899999988664
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=1.1e-14 Score=169.14 Aligned_cols=245 Identities=16% Similarity=0.189 Sum_probs=168.3
Q ss_pred ceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCcccCCEEecCC
Q 002863 505 DVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNLVSLQYLDLSN 581 (873)
Q Consensus 505 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L~~L~L~~ 581 (873)
+...|.++++.+..+|... .+.|+.|++++|.++.+| ...+ ++|++|++++| .+|..+. .+|+.|+|++
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP--~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLP--ENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCC--hhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 5678899998888887632 368999999999999888 4433 58999999999 4566553 4799999999
Q ss_pred CCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHH
Q 002863 582 SIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQ 661 (873)
Q Consensus 582 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 661 (873)
|.+..+|..+. .+|+.|++++| .++.+|.. +. ++|+.|++++|. +. ..+..+. ++|+.|+++.+...
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~-Lt-~LP~~lp--~sL~~L~Ls~N~Lt--- 317 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNS-IR-TLPAHLP--SGITHLNVQSNSLT--- 317 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCc-cc-cCcccch--hhHHHHHhcCCccc---
Confidence 99999998775 58999999988 89988865 43 589999999863 22 2222221 35666777543332
Q ss_pred HhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEcccc
Q 002863 662 RLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSK 741 (873)
Q Consensus 662 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 741 (873)
.+... . ..+|+.|++++|.++.. |..+. ++|+.|++++| .++. .|..+ +++|+.|+|++|.
T Consensus 318 ~LP~~--l-~~sL~~L~Ls~N~Lt~L-P~~l~--~sL~~L~Ls~N-~L~~-LP~~l-----------p~~L~~LdLs~N~ 378 (754)
T PRK15370 318 ALPET--L-PPGLKTLEAGENALTSL-PASLP--PELQVLDVSKN-QITV-LPETL-----------PPTITTLDVSRNA 378 (754)
T ss_pred cCCcc--c-cccceeccccCCccccC-Chhhc--CcccEEECCCC-CCCc-CChhh-----------cCCcCEEECCCCc
Confidence 22111 1 13788888888887653 33343 68888888885 4443 22221 3578889998888
Q ss_pred CCCcCcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcc
Q 002863 742 LRQVTWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLN 800 (873)
Q Consensus 742 l~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 800 (873)
++.+|.- ..++|+.|++++|.+. .++ ..++.....+|++..|.+.+++
T Consensus 379 Lt~LP~~-l~~sL~~LdLs~N~L~-~LP---------~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 379 LTNLPEN-LPAALQIMQASRNNLV-RLP---------ESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCCCHh-HHHHHHHHhhccCCcc-cCc---------hhHHHHhhcCCCccEEEeeCCC
Confidence 8877632 1246888888888654 222 2233334456788888887744
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=4.8e-16 Score=156.87 Aligned_cols=263 Identities=22% Similarity=0.227 Sum_probs=138.0
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeecccccccccc--CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCC-
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVS--PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSH- 561 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~- 561 (873)
..+.+.+.+++++|. ..+.....+.+..|.|+.+|+. ..+++||.|+|++|.|+.+. ++.|.+++.|-.|-+.+
T Consensus 49 ~~VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~--p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA--PDAFKGLASLLSLVLYGN 125 (498)
T ss_pred ceEEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcC--hHhhhhhHhhhHHHhhcC
Confidence 455566777777764 3445666677777777776654 55666777777777766666 56666766666655555
Q ss_pred CC---CC-ccccCcccCCEEecCCCCCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchh
Q 002863 562 SD---LP-CEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDS 636 (873)
Q Consensus 562 n~---lp-~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~ 636 (873)
|+ +| ..|++|..|+.|.+.-|.+..++.. +..|++|..|.+..| .+..++.+.|..+.+++++++..+......
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccccc
Confidence 43 33 3456666666666666666665543 666666666666666 566666656666666666666542100000
Q ss_pred -----------hHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceE---EecCCCCCC-ccccccccccccceE
Q 002863 637 -----------LVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSL---CLRGCRLEP-FTIFSLASLRHLQTL 701 (873)
Q Consensus 637 -----------~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L---~L~~~~~~~-~~~~~l~~l~~L~~L 701 (873)
.+.+++......-..+. ...+.......+ .. +++.+ -.+.|.... .+...|..+++|++|
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~---~~Ri~q~~a~kf-~c-~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLY---YKRINQEDARKF-LC-SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL 279 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHH---HHHhcccchhhh-hh-hHHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence 00011111000000000 000000000000 00 11111 111222222 222346667777777
Q ss_pred EeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcC--cccccCCCcEEeeccCccch
Q 002863 702 HLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT--WLILAPNLKHLEVQNCPYME 766 (873)
Q Consensus 702 ~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~~~ 766 (873)
++++ |.++.+...+| .....++.|.|..|++..+. .+..+..|+.|+|.+|++..
T Consensus 280 nlsn-N~i~~i~~~aF---------e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 280 NLSN-NKITRIEDGAF---------EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred ccCC-Cccchhhhhhh---------cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEE
Confidence 7776 66666665555 34556666666666666553 45566666666666666543
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=4.5e-14 Score=162.76 Aligned_cols=236 Identities=19% Similarity=0.163 Sum_probs=171.4
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL 564 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l 564 (873)
..+...++.++.+|. .++++++|++++|.++.+|.. .++|+.|++++|.++.++ . ...+|+.|++++|.+
T Consensus 225 ~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp--~----lp~~L~~L~Ls~N~L 294 (788)
T PRK15387 225 TTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLP--A----LPSGLCKLWIFGNQL 294 (788)
T ss_pred CEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhh--h----chhhcCEEECcCCcc
Confidence 345566677777764 357999999999999988754 579999999999998877 2 236788999999954
Q ss_pred CccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCC
Q 002863 565 PCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGL 644 (873)
Q Consensus 565 p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l 644 (873)
..--..+++|++|+|++|.+..+|... .+|+.|++++| .++.+|. + ..+|++|++++|. +.. .|.. .
T Consensus 295 t~LP~~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~--l--p~~Lq~LdLS~N~-Ls~-LP~l---p 361 (788)
T PRK15387 295 TSLPVLPPGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSLPT--L--PSGLQELSVSDNQ-LAS-LPTL---P 361 (788)
T ss_pred ccccccccccceeECCCCccccCCCCc---ccccccccccC-ccccccc--c--ccccceEecCCCc-cCC-CCCC---C
Confidence 211123578999999999999988643 46888999998 8888875 2 2589999999863 322 2221 2
Q ss_pred CCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecccccccccc
Q 002863 645 EHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIR 724 (873)
Q Consensus 645 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 724 (873)
.+|+.|+++.+. +..+... . .+|+.|++++|.+.... .. .++|+.|++++| .++.+ |.
T Consensus 362 ~~L~~L~Ls~N~---L~~LP~l---~-~~L~~LdLs~N~Lt~LP-~l---~s~L~~LdLS~N-~LssI-P~--------- 419 (788)
T PRK15387 362 SELYKLWAYNNR---LTSLPAL---P-SGLKELIVSGNRLTSLP-VL---PSELKELMVSGN-RLTSL-PM--------- 419 (788)
T ss_pred cccceehhhccc---cccCccc---c-cccceEEecCCcccCCC-Cc---ccCCCEEEccCC-cCCCC-Cc---------
Confidence 466777775433 3333221 1 27999999999987533 22 368999999984 45542 21
Q ss_pred CccccccccEEEEccccCCCcC-cccccCCCcEEeeccCccchhh
Q 002863 725 EIHGFHSLQNVYISHSKLRQVT-WLILAPNLKHLEVQNCPYMEEI 768 (873)
Q Consensus 725 ~~~~l~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~~~~~ 768 (873)
.+.+|+.|++++|+++.+| .+..+++|+.|+|++|++....
T Consensus 420 ---l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 420 ---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred ---chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchH
Confidence 2357889999999999987 6788999999999999876443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=3.9e-15 Score=133.00 Aligned_cols=151 Identities=26% Similarity=0.366 Sum_probs=120.5
Q ss_pred cCCccccccceEEEEeecccccccccc-CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCc
Q 002863 496 EAPSVGMWKDVTRMSLMDNKIKRLTVS-PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNL 571 (873)
Q Consensus 496 ~~~~~~~~~~l~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L 571 (873)
+++....++++++|.++.|.+..+|+. ..+.+|++|++++|.++.+| ..+++++.||.|+++-| .+|..||.+
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp---~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELP---TSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcC---hhhhhchhhhheecchhhhhcCccccCCC
Confidence 345555667888888999988887665 67888899999999888887 34788899999998888 458889999
Q ss_pred ccCCEEecCCCCC--CccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCce
Q 002863 572 VSLQYLDLSNSIP--DRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNV 649 (873)
Q Consensus 572 ~~L~~L~L~~~~i--~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 649 (873)
+-|++|||++|.+ ..+|..|..++.|+-|+|+.| ....+|++ ++++++|+.|.+..+. ....|.+++.++.|+.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdnd--ll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDND--LLSLPKEIGDLTRLRE 177 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCc--hhhCcHHHHHHHHHHH
Confidence 9999999986644 468888888888899999888 77888887 8899999999888753 3456778888887777
Q ss_pred eEEE
Q 002863 650 LTIT 653 (873)
Q Consensus 650 L~l~ 653 (873)
|++.
T Consensus 178 lhiq 181 (264)
T KOG0617|consen 178 LHIQ 181 (264)
T ss_pred Hhcc
Confidence 7763
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=8e-15 Score=148.13 Aligned_cols=281 Identities=18% Similarity=0.195 Sum_probs=178.5
Q ss_pred eccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecC-CCCCCc
Q 002863 512 MDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLS-NSIPDR 586 (873)
Q Consensus 512 ~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~-~~~i~~ 586 (873)
++..++++|... .+.-..+.|..|.|+.+| +.+|+.+++||.||||+|.| |+.|.+|..|-.|-+. +|.|+.
T Consensus 54 r~~GL~eVP~~L-P~~tveirLdqN~I~~iP--~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 54 RGKGLTEVPANL-PPETVEIRLDQNQISSIP--PGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cCCCcccCcccC-CCcceEEEeccCCcccCC--hhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 344555555432 245678999999999999 89999999999999999965 8899999998877776 499999
Q ss_pred cchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhh---HHH
Q 002863 587 LPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHA---LQR 662 (873)
Q Consensus 587 lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---l~~ 662 (873)
+|+. |++|..|+.|.+.-| ++.-++.++|..|++|..|.++++. .....-..+..+..++.+.+..+.... ++.
T Consensus 131 l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccch
Confidence 9976 899999999999988 8899999999999999999999852 222222245666677766654322100 000
Q ss_pred h------hccCCCccCCcceEEecCCCCCCcccccccc-ccccceEEeecCCCCcceeeccccccccccCccccccccEE
Q 002863 663 L------LSSSRFQSISIPSLCLRGCRLEPFTIFSLAS-LRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNV 735 (873)
Q Consensus 663 ~------~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L 735 (873)
+ .+.............+.+..+....+..+.. +.++.+=-.+.|+ .....|.. -+..+++|++|
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~-~d~~cP~~--------cf~~L~~L~~l 279 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF-PDSICPAK--------CFKKLPNLRKL 279 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC-cCCcChHH--------HHhhcccceEe
Confidence 0 0000000001111111122111111111110 1111110111111 11111111 13678999999
Q ss_pred EEccccCCCcC--cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcccccccccC-CCCC
Q 002863 736 YISHSKLRQVT--WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSN-ALPF 812 (873)
Q Consensus 736 ~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~ 812 (873)
+|++|+++.+. ++..+..++.|.|..|++-. +. ...+.++..|+.|+|.+ ++++.+..+ +...
T Consensus 280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~-v~------------~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 280 NLSNNKITRIEDGAFEGAAELQELYLTRNKLEF-VS------------SGMFQGLSGLKTLSLYD-NQITTVAPGAFQTL 345 (498)
T ss_pred ccCCCccchhhhhhhcchhhhhhhhcCcchHHH-HH------------HHhhhccccceeeeecC-CeeEEEeccccccc
Confidence 99999999984 89999999999999997532 21 12567788999999999 777776553 2334
Q ss_pred CCccEEeE
Q 002863 813 PRLKEMSV 820 (873)
Q Consensus 813 ~~L~~L~l 820 (873)
.+|.+|.+
T Consensus 346 ~~l~~l~l 353 (498)
T KOG4237|consen 346 FSLSTLNL 353 (498)
T ss_pred ceeeeeeh
Confidence 44444443
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.35 E-value=9.7e-13 Score=155.31 Aligned_cols=330 Identities=20% Similarity=0.213 Sum_probs=201.2
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeeccc--cccccc--cCCCCcccEEEecCCc-cccCCCCchhhhcCCcceEEec
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNK--IKRLTV--SPTSPRLLTLFLNSNY-FKNDKVNYHFFKSMASLRVLKL 559 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~--~~~l~~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~l~~Lr~L~L 559 (873)
..++..++.....+.....++++.|-+..|. +..++. ...++.|++|||++|. +..+| ..++++-+||+|+|
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP---~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP---SSIGELVHLRYLDL 602 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC---hHHhhhhhhhcccc
Confidence 3444444444445544455579999999886 566655 5779999999999886 56665 67899999999999
Q ss_pred CCC---CCCccccCcccCCEEecCCCC-CCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCch
Q 002863 560 SHS---DLPCEISNLVSLQYLDLSNSI-PDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLD 635 (873)
Q Consensus 560 ~~n---~lp~~i~~L~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~ 635 (873)
+++ .+|..+++|+.|.||++..+. ...+|..+..|++|++|.+.... . ......++.+.+|++|....+.....
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~-~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-L-SNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-c-ccchhhHHhhhcccchhhheeecchh
Confidence 999 679999999999999999874 44455556669999999997762 1 11112234444444444333221122
Q ss_pred hhHHHhcCCCCCceeEEEEc-chhhHHHhhccCCCccCCcceEEecCCCCCCccccc-----ccc-ccccceEEeecCCC
Q 002863 636 SLVEELLGLEHLNVLTITLH-SNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFS-----LAS-LRHLQTLHLVECND 708 (873)
Q Consensus 636 ~~~~~l~~l~~L~~L~l~~~-~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-----l~~-l~~L~~L~l~~~~~ 708 (873)
.....+..+..|..+..... ......... .......+|+.|.+.+|......... ... ++++..+.+.+|..
T Consensus 681 ~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~-~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 681 LLLEDLLGMTRLRSLLQSLSIEGCSKRTLI-SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred HhHhhhhhhHHHHHHhHhhhhcccccceee-cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc
Confidence 33344444444443322211 001111111 11222337899999999875432211 111 44666666667766
Q ss_pred CcceeeccccccccccCccccccccEEEEccc-cCCCc-CcccccCCCcEEeeccCccchhhcccCcccccccccccccc
Q 002863 709 LEDFMIACAGEMKKIREIHGFHSLQNVYISHS-KLRQV-TWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLT 786 (873)
Q Consensus 709 l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~l-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (873)
..++ .|. ...++|+.|.+.+| .++.+ |....+..+..+.+..+....- . .....+
T Consensus 760 ~r~l--~~~---------~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l-~-----------~~~~l~ 816 (889)
T KOG4658|consen 760 LRDL--TWL---------LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL-R-----------MLCSLG 816 (889)
T ss_pred cccc--chh---------hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc-e-----------eeecCC
Confidence 6532 222 35789999999999 55554 5566666666655544433211 0 112445
Q ss_pred cccccceecccCcccccccccCC----CCCCCccEEeEccC-cCcccCcCCCcCCCCcceEEechHHH
Q 002863 787 PFARLEYLILKGLNNLKNICSNA----LPFPRLKEMSVHEC-SKLRQLALDCNCGLERKIIIEAEERW 849 (873)
Q Consensus 787 ~~~~L~~L~L~~~~~L~~l~~~~----~~~~~L~~L~l~~c-~~L~~L~l~~n~~l~~l~~~~~~~~~ 849 (873)
.||++..+.+.. +.++.+.... ..+|.+.++.+.+| +++..+|-..- ++.+++..+.
T Consensus 817 ~l~~i~~~~l~~-~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~-----~~~v~~~~~~ 878 (889)
T KOG4658|consen 817 GLPQLYWLPLSF-LKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEW-----LEGVYWEDEL 878 (889)
T ss_pred CCceeEecccCc-cchhheehhcCcccccCccccccceeccccceeecCCccc-----eeeEEehhhh
Confidence 566666666655 3355555544 45788888999997 88888876533 4555555443
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.35 E-value=4.7e-11 Score=148.13 Aligned_cols=291 Identities=15% Similarity=0.205 Sum_probs=179.1
Q ss_pred CCcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC-cccHHHHHHHHHHHh
Q 002863 143 PPTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-DLQLEKIQEIIAKKI 221 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l 221 (873)
++.++-|..-.+.+-+ ....+++.|.|++|.||||++....+.. . .++|+++.. ..++..+...++..+
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHH
Confidence 4566777755554432 1357899999999999999999887543 1 589999864 446666767777766
Q ss_pred CCCCcc-----------ccccCHHHHHHHHHHHhc--cCCeEEEEeccccccc--cc-cccccCCCCCCCCcEEEEEccc
Q 002863 222 GLFNES-----------WKNKSMQEKAQQIFNILS--KKKFVLLLDDMWELVD--LD-QVGLPIPSRTSVSNKVVFTTRE 285 (873)
Q Consensus 222 ~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~--~~-~~~~~l~~~~~~gs~iivTtR~ 285 (873)
+..... ....+.......+...+. +.+++|||||+....+ .. .+...+... ..+.++|||||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~-~~~~~lv~~sR~ 161 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ-PENLTLVVLSRN 161 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC-CCCeEEEEEeCC
Confidence 421110 001122333444444443 6899999999975422 12 222222322 456689899998
Q ss_pred hhhh---hccccccceeec----cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCCh
Q 002863 286 FEVC---GQMEAHRSFKVE----CLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAMASRKTP 358 (873)
Q Consensus 286 ~~v~---~~~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~ 358 (873)
..-. ..........+. +|+.+|+.++|....+..- -.+...+|.+.|+|.|+++..++..+......
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 4211 111122344555 9999999999987765332 13557899999999999999998877553211
Q ss_pred HHHHHHHHHHHchhcccCCc-hhHHHHHhh-hccccCCcchhHHHHhhhccCCCCccccHHHHHHHHHHcCCccCCChhh
Q 002863 359 REWEHAIEVLRSSASKFAGM-EKRVFSRLK-FSFDFLPSDATRFCLLYCTLFPEDYRISIEDLIDCWICEGFLDDHDGIE 436 (873)
Q Consensus 359 ~~w~~~~~~l~~~~~~~~~~-~~~i~~~l~-~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~ 436 (873)
.. .... ...+. ...+...+. -.|+.||+ ..+..+...|+++ .++.+ +.. .+..
T Consensus 236 ~~--~~~~-------~~~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~-----~l~~------ 290 (903)
T PRK04841 236 LH--DSAR-------RLAGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIV-----RVTG------ 290 (903)
T ss_pred hh--hhhH-------hhcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHH-----HHcC------
Confidence 00 0000 11110 123444433 34789999 7999999999987 33322 222 1111
Q ss_pred HHHHHHHHHHHHHHcccccc-c--cCCceEEEeeeechhhhhh
Q 002863 437 ARNQGYSLIRNLLHACLLEE-E--KDNSVKMHYVVRDMALWIA 476 (873)
Q Consensus 437 ~~~~~~~~l~~L~~~~ll~~-~--~~~~~~mHdlv~~~a~~i~ 476 (873)
.+.+...+++|.+.+++.. . ....|.+|++++++.....
T Consensus 291 -~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 -EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred -CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1234567899999999653 2 3347899999999987654
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=3.1e-14 Score=127.27 Aligned_cols=150 Identities=29% Similarity=0.363 Sum_probs=127.9
Q ss_pred EEcCCCcccC-CccccccceEEEEeecccccccccc-CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC---
Q 002863 488 VLTGAGLTEA-PSVGMWKDVTRMSLMDNKIKRLTVS-PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS--- 562 (873)
Q Consensus 488 ~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n--- 562 (873)
+.+.+.++.+ |.+..+.++..|++++|.++++|.. +.+++|+.|++.-|.+...| ..|+.++.|++|||++|
T Consensus 39 tLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lp---rgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 39 TLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILP---RGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred hcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCc---cccCCCchhhhhhccccccc
Confidence 3344455444 5677888999999999999999876 78999999999999987777 45899999999999998
Q ss_pred --CCCccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHH
Q 002863 563 --DLPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEE 640 (873)
Q Consensus 563 --~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 640 (873)
.+|..|..+..|+-|.|+.|.++-+|..+++|++||.|.+..| .+-++|.+ ++.++.|++|++.++. ....|.+
T Consensus 116 e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnr--l~vlppe 191 (264)
T KOG0617|consen 116 ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNR--LTVLPPE 191 (264)
T ss_pred cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccce--eeecChh
Confidence 5698999999999999999999999999999999999999999 78889987 9999999999999853 3345555
Q ss_pred hcCC
Q 002863 641 LLGL 644 (873)
Q Consensus 641 l~~l 644 (873)
++++
T Consensus 192 l~~l 195 (264)
T KOG0617|consen 192 LANL 195 (264)
T ss_pred hhhh
Confidence 5554
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.32 E-value=3.1e-10 Score=126.08 Aligned_cols=297 Identities=15% Similarity=0.122 Sum_probs=171.6
Q ss_pred CCCcccchhHHHHHHHHHHhc----CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHH
Q 002863 142 LPPTVVGLQLTFDRVWRCLME----EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEII 217 (873)
Q Consensus 142 ~~~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 217 (873)
.|+.++||+++++++...+.+ .....+.|+|++|+|||++++.++++. ......-..+++.+....+...++..|
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 356799999999999998743 344567899999999999999999987 222222346677777777788899999
Q ss_pred HHHhCCCCccccccCHHHHHHHHHHHhc--cCCeEEEEecccccc------ccccccccCCCCCCCCcEEEEEccchhhh
Q 002863 218 AKKIGLFNESWKNKSMQEKAQQIFNILS--KKKFVLLLDDMWELV------DLDQVGLPIPSRTSVSNKVVFTTREFEVC 289 (873)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~l~~~~~~gs~iivTtR~~~v~ 289 (873)
+.+++.........+..+....+.+.+. +++.+||||+++... .+..+...+.........+|.++....+.
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 9998652211123356677777777775 456899999997642 12222222221101122366666655433
Q ss_pred hccc-------cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHH----hCCchhHHHHHHHHHh----c
Q 002863 290 GQME-------AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKD----CGGLPLALITVGRAMA----S 354 (873)
Q Consensus 290 ~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~----c~glPLai~~~~~~l~----~ 354 (873)
.... ....+.+++++.++..+++..++..... ...-.++....|++. .|..+.|+.++-.+.. .
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~-~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFY-PGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcc-cCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 2211 1346799999999999999987642210 001112333444444 4557778777654321 1
Q ss_pred CC---ChHHHHHHHHHHHchhcccCCchhHHHHHhhhccccCCcchhHHHHhhhc-cCC-CCccccHHHHHHH--HHHcC
Q 002863 355 RK---TPREWEHAIEVLRSSASKFAGMEKRVFSRLKFSFDFLPSDATRFCLLYCT-LFP-EDYRISIEDLIDC--WICEG 427 (873)
Q Consensus 355 ~~---~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~-~fp-~~~~i~~~~Li~~--W~aeg 427 (873)
.. +.+..+.+.+.... ....-.+..||. +.|..+..++ ... ....+....+... .+++.
T Consensus 266 ~~~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 11 34455444443311 122345778888 4443332222 222 1134555555432 23322
Q ss_pred CccCCChhhHHHHHHHHHHHHHHccccccc
Q 002863 428 FLDDHDGIEARNQGYSLIRNLLHACLLEEE 457 (873)
Q Consensus 428 ~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 457 (873)
+-.. .........+++.|...+++...
T Consensus 332 ~~~~---~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGYE---PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCCC---cCcHHHHHHHHHHHHhcCCeEEE
Confidence 1110 11234556789999999998764
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.31 E-value=7.1e-13 Score=143.26 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=38.5
Q ss_pred CcceEEecCCCCCCc----cccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCc--C
Q 002863 673 SIPSLCLRGCRLEPF----TIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQV--T 746 (873)
Q Consensus 673 ~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l--~ 746 (873)
+|+.|++++|.+.+. .+..+..+++|+.|++++| .+++.....+. ..+..+++|++|++++|.+++. .
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~-----~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALA-----ETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHH-----HHhcccCCCCEEecCCCcCchHHHH
Confidence 455555555554421 1112333446666666654 23221111110 1113455666666666655542 1
Q ss_pred cc-cc----cCCCcEEeeccCcc
Q 002863 747 WL-IL----APNLKHLEVQNCPY 764 (873)
Q Consensus 747 ~l-~~----l~~L~~L~L~~~~~ 764 (873)
.+ .. .+.|++|++++|.+
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCC
Confidence 11 11 25666666666654
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.27 E-value=2.5e-12 Score=138.95 Aligned_cols=235 Identities=21% Similarity=0.166 Sum_probs=124.2
Q ss_pred CcccEEEecCCccccCC--CCchhhhcCCcceEEecCCCCCC----------ccccCcccCCEEecCCCCCC-ccchhhh
Q 002863 526 PRLLTLFLNSNYFKNDK--VNYHFFKSMASLRVLKLSHSDLP----------CEISNLVSLQYLDLSNSIPD-RLPLGLK 592 (873)
Q Consensus 526 ~~L~~L~l~~n~l~~~~--~~~~~~~~l~~Lr~L~L~~n~lp----------~~i~~L~~L~~L~L~~~~i~-~lp~~i~ 592 (873)
+.|+.|+++++.++... .....+...+.|+.|+++++.+. ..+..+++|++|++++|.+. ..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 34566666665542211 00223445555666666665332 23445566666666665554 2333344
Q ss_pred cCCC---CcEeeccccccccccC----hhhhCCC-cccceEeccccCCCc---hhhHHHhcCCCCCceeEEEEcchh--h
Q 002863 593 YLVN---LKCLNLEYTFRLSRIS----PQVISNL-KMLRVLRMFECGSFL---DSLVEELLGLEHLNVLTITLHSNH--A 659 (873)
Q Consensus 593 ~l~~---L~~L~L~~~~~l~~l~----~~~i~~l-~~L~~L~l~~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~--~ 659 (873)
.+.+ |++|++++| .+...+ ...+..+ ++|++|++.+|.... ......+..+++|+.|+++.+... .
T Consensus 103 ~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 103 SLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 4443 666666666 343211 1123444 666666666653110 122334455566666666543322 1
Q ss_pred HHHhhccCCCccCCcceEEecCCCCCCcc----ccccccccccceEEeecCCCCcceeeccccccccccCccccccccEE
Q 002863 660 LQRLLSSSRFQSISIPSLCLRGCRLEPFT----IFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNV 735 (873)
Q Consensus 660 l~~~~~~~~~~~~~L~~L~L~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L 735 (873)
+..+..... ...+|+.|++++|.+.+.. ...+..+++|+.|++++| .+++..+..+.. .+. ...+.|++|
T Consensus 182 ~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~--~~~--~~~~~L~~L 255 (319)
T cd00116 182 IRALAEGLK-ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALAS--ALL--SPNISLLTL 255 (319)
T ss_pred HHHHHHHHH-hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHH--HHh--ccCCCceEE
Confidence 111111111 1137888888888765433 234566788999999985 444322222210 000 124789999
Q ss_pred EEccccCCCc------CcccccCCCcEEeeccCccchh
Q 002863 736 YISHSKLRQV------TWLILAPNLKHLEVQNCPYMEE 767 (873)
Q Consensus 736 ~L~~~~l~~l------~~l~~l~~L~~L~L~~~~~~~~ 767 (873)
++++|.+++. ..+..+++|++|++++|.....
T Consensus 256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 9999988631 2345568899999999987643
No 28
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.24 E-value=1.4e-09 Score=114.07 Aligned_cols=182 Identities=15% Similarity=0.243 Sum_probs=116.1
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN 242 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (873)
...+++.|+|++|+||||+++.+++.. .. ..+ ..+|+ +....+..+++..|+..++.... ..+.......+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 445689999999999999999999886 21 221 22333 33345778899999999887532 2233333444443
Q ss_pred Hh-----ccCCeEEEEecccccc--ccccccccCC--CCCCCCcEEEEEccchhhhhccc----------cccceeeccC
Q 002863 243 IL-----SKKKFVLLLDDMWELV--DLDQVGLPIP--SRTSVSNKVVFTTREFEVCGQME----------AHRSFKVECL 303 (873)
Q Consensus 243 ~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~--~~~~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L 303 (873)
.+ .+++.++|+||+|... .++.+..... ........|++|.... ....+. ....++++++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 32 6788999999998753 3444332111 1102233556665432 211111 1345789999
Q ss_pred ChhhhHHHHHHHhcCCCCCCCC-ChHHHHHHHHHHhCCchhHHHHHHHHH
Q 002863 304 RYDDAWKLFELKVGADTLDSHP-DIPELAETLAKDCGGLPLALITVGRAM 352 (873)
Q Consensus 304 ~~~e~~~lf~~~~~~~~~~~~~-~~~~~~~~i~~~c~glPLai~~~~~~l 352 (873)
+.+|..+++...+......... -.++..+.|++.++|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999998876533211111 235778999999999999999988776
No 29
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.21 E-value=4.8e-09 Score=115.35 Aligned_cols=297 Identities=16% Similarity=0.170 Sum_probs=171.0
Q ss_pred CCcccchhHHHHHHHHHHhc----CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCC---ceEEEEEeCCcccHHHHHH
Q 002863 143 PPTVVGLQLTFDRVWRCLME----EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF---DFVIWVVVSRDLQLEKIQE 215 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~~~~~ 215 (873)
|+.++||++++++|..++.. ...+.+.|+|++|+|||++++.+++......... -..+|+.+....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 45789999999999999864 3456789999999999999999998752111111 2456788777777888999
Q ss_pred HHHHHh---CCCCccccccCHHHHHHHHHHHhc--cCCeEEEEecccccc-c----ccccccc--CCCCCCCCcEEEEEc
Q 002863 216 IIAKKI---GLFNESWKNKSMQEKAQQIFNILS--KKKFVLLLDDMWELV-D----LDQVGLP--IPSRTSVSNKVVFTT 283 (873)
Q Consensus 216 ~i~~~l---~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~----~~~~~~~--l~~~~~~gs~iivTt 283 (873)
.|++++ +..... ...+..+....+.+.+. +++++||||+++... . +..+... ..........+|.+|
T Consensus 94 ~i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 94 ELANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 999988 332111 22344555666666663 567899999997652 1 1122111 011101233455555
Q ss_pred cchhhhhccc-------cccceeeccCChhhhHHHHHHHhcCC--CCCCCCChHHHHHHHHHHhCCchhHH-HHHHHHH-
Q 002863 284 REFEVCGQME-------AHRSFKVECLRYDDAWKLFELKVGAD--TLDSHPDIPELAETLAKDCGGLPLAL-ITVGRAM- 352 (873)
Q Consensus 284 R~~~v~~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~glPLai-~~~~~~l- 352 (873)
........+. ....+.+++++.++..+++..++... .....++..+....++....|.|-.+ .++-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5443221111 12468999999999999999887421 11122333344556677777887443 3332222
Q ss_pred ---hcC---CChHHHHHHHHHHHchhcccCCchhHHHHHhhhccccCCcchhHHHHhhhcc--CCCCccccHHHHHHHH-
Q 002863 353 ---ASR---KTPREWEHAIEVLRSSASKFAGMEKRVFSRLKFSFDFLPSDATRFCLLYCTL--FPEDYRISIEDLIDCW- 423 (873)
Q Consensus 353 ---~~~---~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~--fp~~~~i~~~~Li~~W- 423 (873)
... -+.+..+.+.+.+.. ....-++..||. +.|..+..++. -.++..+...++...+
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 111 133334433333211 222345668887 55544433321 1144456666666533
Q ss_pred -HHcCCccCCChhhHHHHHHHHHHHHHHccccccc
Q 002863 424 -ICEGFLDDHDGIEARNQGYSLIRNLLHACLLEEE 457 (873)
Q Consensus 424 -~aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 457 (873)
+++.+ .. .+........++..|...+++...
T Consensus 319 ~~~~~~-~~--~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCEDI-GV--DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHhc-CC--CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 22211 11 123456677889999999998764
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.20 E-value=4.9e-11 Score=122.49 Aligned_cols=195 Identities=16% Similarity=0.219 Sum_probs=103.0
Q ss_pred ccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHH---------H
Q 002863 146 VVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQE---------I 216 (873)
Q Consensus 146 ~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~---------~ 216 (873)
|+||+.++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.. + ...+ .++|+...+......... .
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~-~-~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL-K-EKGY-KVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh-h-hcCC-cEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 68999999999999987777899999999999999999999876 2 1111 344444444332221111 1
Q ss_pred HHHHhCCCCcc--------ccccCHHHHHHHHHHHhc--cCCeEEEEecccccc-ccc-------cccccC---CCCCCC
Q 002863 217 IAKKIGLFNES--------WKNKSMQEKAQQIFNILS--KKKFVLLLDDMWELV-DLD-------QVGLPI---PSRTSV 275 (873)
Q Consensus 217 i~~~l~~~~~~--------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~~-------~~~~~l---~~~~~~ 275 (873)
+.+.++..... ............+.+.+. +++.+||+||+.... ... .+...+ ... .+
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ-QN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc-CC
Confidence 11112110000 011122333444444443 456999999997655 111 111111 122 33
Q ss_pred CcEEEEEccchhhhhc--------cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHH
Q 002863 276 SNKVVFTTREFEVCGQ--------MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALIT 347 (873)
Q Consensus 276 gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 347 (873)
. .+|+++....+... .+....+.+++|+.+++++++...+... ... +.-++..++|...+||.|..|..
T Consensus 157 ~-~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 V-SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp E-EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred c-eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 3 44444444433322 2333459999999999999999976544 111 22345569999999999988764
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.09 E-value=1.5e-09 Score=116.69 Aligned_cols=273 Identities=14% Similarity=0.122 Sum_probs=148.0
Q ss_pred CcccchhHHHHHHHHHHhc-----CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLME-----EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIA 218 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 218 (873)
.+|+|+++.++.+..++.. .....+.|+|++|+||||+|+.+++.. . ..+ .++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEeccc-ccChHHHHHHH
Confidence 4689999999998777752 345678899999999999999999987 2 221 1122111 11112223333
Q ss_pred HHhCCCC----ccccccCHHHHHHHHHHHhccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhhhccc-
Q 002863 219 KKIGLFN----ESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVCGQME- 293 (873)
Q Consensus 219 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~- 293 (873)
..++... ++.+..+ ....+.++..+.+.+..+|+|+..+...+. ..+ ...+-|..|+|...+.....
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l----~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDL----PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecC----CCceEEeecCCcccCCHHHHH
Confidence 3332111 0000000 112233445555556666666653322221 111 12344566776554432211
Q ss_pred -cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHHHHHchh
Q 002863 294 -AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAMASRKTPREWEHAIEVLRSSA 372 (873)
Q Consensus 294 -~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 372 (873)
....++++++++++..+++.+.+.......+ ++....|++.|+|.|-.+..+...+. .|.... ....
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCC
Confidence 1346899999999999999998876543222 45689999999999965555444321 121110 0000
Q ss_pred cccCCchhHHHHHhhhccccCCcchhHHHHh-hhccCCCCccccHHHHHHHHHHcCCccCCChhhHHHHHHHHHH-HHHH
Q 002863 373 SKFAGMEKRVFSRLKFSFDFLPSDATRFCLL-YCTLFPEDYRISIEDLIDCWICEGFLDDHDGIEARNQGYSLIR-NLLH 450 (873)
Q Consensus 373 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~l~-~L~~ 450 (873)
... ..-......+...|..|+. ..+..+. ....|+.+ .+..+.+.... | ...+..+..++ .|++
T Consensus 238 I~~-~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 238 ITK-EIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLIQ 303 (328)
T ss_pred CCH-HHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHHH
Confidence 000 0012344556677888887 4555553 66667655 46655554332 1 11223333445 7888
Q ss_pred ccccccc
Q 002863 451 ACLLEEE 457 (873)
Q Consensus 451 ~~ll~~~ 457 (873)
.+|++..
T Consensus 304 ~~li~~~ 310 (328)
T PRK00080 304 QGFIQRT 310 (328)
T ss_pred cCCcccC
Confidence 8888654
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.06 E-value=8.9e-09 Score=110.02 Aligned_cols=273 Identities=15% Similarity=0.133 Sum_probs=150.2
Q ss_pred CcccchhHHHHHHHHHHhc-----CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLME-----EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIA 218 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 218 (873)
.+|+|+++.++++..++.. .....+.++|++|+|||+||+.+++.. . ..+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~-~--~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM-G--VNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--CCE---EEeccchhcCchh-HHHHH
Confidence 3589999999999888862 345568899999999999999999876 2 222 1222211111122 22222
Q ss_pred HHhCCCC----ccccccCHHHHHHHHHHHhccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhhhccc-
Q 002863 219 KKIGLFN----ESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVCGQME- 293 (873)
Q Consensus 219 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~- 293 (873)
..++... ++.+..+ ......+...+.+.+..+|+|+..+...+.. .+ .+.+-|..||+...+....-
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~----~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DL----PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cC----CCeEEEEecCCccccCHHHHh
Confidence 3332211 0001111 1223445666666677777777654443321 12 12345666777654433211
Q ss_pred -cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHHHHHchh
Q 002863 294 -AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAMASRKTPREWEHAIEVLRSSA 372 (873)
Q Consensus 294 -~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 372 (873)
....+++++++.++..+++.+.+.......+ ++....|++.|+|.|-.+..++..+ |..+ .......
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a-~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFA-QVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHH-HHcCCCC
Confidence 1346789999999999999988865432222 4567899999999997665555432 1110 0000000
Q ss_pred cccCCchhHHHHHhhhccccCCcchhHHHHh-hhccCCCCccccHHHHHHHHHHcCCccCCChhhHHHHHHHHHH-HHHH
Q 002863 373 SKFAGMEKRVFSRLKFSFDFLPSDATRFCLL-YCTLFPEDYRISIEDLIDCWICEGFLDDHDGIEARNQGYSLIR-NLLH 450 (873)
Q Consensus 373 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~l~-~L~~ 450 (873)
... ..-......+...|..++. +.+..+. ..+.++.+ .++.+.+.... | ......+..++ .|++
T Consensus 217 it~-~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 217 INR-DIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQ 282 (305)
T ss_pred cCH-HHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHH
Confidence 000 0001233335667888887 5555444 55666533 45544443322 1 12234455566 5999
Q ss_pred ccccccc
Q 002863 451 ACLLEEE 457 (873)
Q Consensus 451 ~~ll~~~ 457 (873)
++++...
T Consensus 283 ~~li~~~ 289 (305)
T TIGR00635 283 IGFLQRT 289 (305)
T ss_pred cCCcccC
Confidence 9998754
No 33
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.00 E-value=9.7e-09 Score=115.35 Aligned_cols=290 Identities=14% Similarity=0.175 Sum_probs=186.0
Q ss_pred CcccchhHHHHHHHHHHhcC-CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc-ccHHHHHHHHHHHh
Q 002863 144 PTVVGLQLTFDRVWRCLMEE-HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQEIIAKKI 221 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l 221 (873)
...|-|. ++++.|... +.+++.|..|+|.|||||+.+..... ..-..+.|.++... .++..+..-++..+
T Consensus 19 ~~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 19 DNYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred ccccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 3446664 455555554 78999999999999999999887633 23346999998764 57888888888888
Q ss_pred CCCCccc-----------cccCHHHHHHHHHHHhc--cCCeEEEEeccccccc---cccccccCCCCCCCCcEEEEEccc
Q 002863 222 GLFNESW-----------KNKSMQEKAQQIFNILS--KKKFVLLLDDMWELVD---LDQVGLPIPSRTSVSNKVVFTTRE 285 (873)
Q Consensus 222 ~~~~~~~-----------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~iivTtR~ 285 (873)
+...+.. ...+...+...+..-+. .++..+||||..-..+ -..+...+... ..+-.+|||||.
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~-P~~l~lvv~SR~ 169 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA-PENLTLVVTSRS 169 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC-CCCeEEEEEecc
Confidence 7322111 12233444555555443 4689999999764322 12222223233 556799999998
Q ss_pred hhh---hhccccccceeec----cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCCh
Q 002863 286 FEV---CGQMEAHRSFKVE----CLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAMASRKTP 358 (873)
Q Consensus 286 ~~v---~~~~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~ 358 (873)
..- ++.--....++++ .|+.+|+-++|....+..- .+...+.+.+...|.+-|+..++=.++...+.
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcH
Confidence 642 2221122333433 6889999999988764322 13457899999999999999999888843332
Q ss_pred HHHHHHHHHHHchhcccCCchhHHHH-HhhhccccCCcchhHHHHhhhccCCCCccccHHHHHHHHHHcCCccCCChhhH
Q 002863 359 REWEHAIEVLRSSASKFAGMEKRVFS-RLKFSFDFLPSDATRFCLLYCTLFPEDYRISIEDLIDCWICEGFLDDHDGIEA 437 (873)
Q Consensus 359 ~~w~~~~~~l~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~ 437 (873)
+.--.. +.+..+.+.. ...--++.||+ .+|..++-||+++.= . ..|+.. .+.
T Consensus 244 ~q~~~~----------LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f---~-~eL~~~------------Ltg 296 (894)
T COG2909 244 EQSLRG----------LSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF---N-DELCNA------------LTG 296 (894)
T ss_pred HHHhhh----------ccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh---h-HHHHHH------------Hhc
Confidence 221111 1111112222 22335788999 799999999998641 1 122221 234
Q ss_pred HHHHHHHHHHHHHccccccc---cCCceEEEeeeechhhhh
Q 002863 438 RNQGYSLIRNLLHACLLEEE---KDNSVKMHYVVRDMALWI 475 (873)
Q Consensus 438 ~~~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~~~a~~i 475 (873)
++.|...+++|.+++++-.. ....|+.|.++.+|-+.-
T Consensus 297 ~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 297 EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhh
Confidence 55677789999999997533 678999999998887643
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=5e-10 Score=106.05 Aligned_cols=124 Identities=27% Similarity=0.233 Sum_probs=36.9
Q ss_pred cccccceEEEEeeccccccccccC-CCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC---Cccc-cCcccC
Q 002863 500 VGMWKDVTRMSLMDNKIKRLTVSP-TSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL---PCEI-SNLVSL 574 (873)
Q Consensus 500 ~~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l---p~~i-~~L~~L 574 (873)
..+..+.+.|++.+|.|..+.... .+.+|+.|++++|.++.+. . +..+++|++|++++|.| ++.+ ..+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~--~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE--G--LPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T--T------TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc--C--ccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 333445667777777776665543 4566777777777666655 1 45566666666666633 2223 245666
Q ss_pred CEEecCCCCCCccc--hhhhcCCCCcEeeccccccccccC---hhhhCCCcccceEecc
Q 002863 575 QYLDLSNSIPDRLP--LGLKYLVNLKCLNLEYTFRLSRIS---PQVISNLKMLRVLRMF 628 (873)
Q Consensus 575 ~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~l~~l~---~~~i~~l~~L~~L~l~ 628 (873)
+.|++++|.|..+- ..+..+++|+.|++.+| .+...+ ..++..+|+|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCE
Confidence 66666666555543 23555666666666666 333332 1234555666666544
No 35
>PF05729 NACHT: NACHT domain
Probab=98.95 E-value=5.3e-09 Score=100.90 Aligned_cols=142 Identities=16% Similarity=0.287 Sum_probs=89.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCC----CceEEEEEeCCcccHH---HHHHHHHHHhCCCCccccccCHHHHHH
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNH----FDFVIWVVVSRDLQLE---KIQEIIAKKIGLFNESWKNKSMQEKAQ 238 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 238 (873)
+++.|+|.+|+||||+++.++... ..... +...+|+..+...... .+...|..+.... ......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL-AEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-----IAPIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH-HhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-----hhhhHH---
Confidence 578999999999999999999876 22222 4567777766543322 3444444333221 111111
Q ss_pred HHHHHh-ccCCeEEEEeccccccc---------ccc-ccccCCCCCCCCcEEEEEccchhh---hhccccccceeeccCC
Q 002863 239 QIFNIL-SKKKFVLLLDDMWELVD---------LDQ-VGLPIPSRTSVSNKVVFTTREFEV---CGQMEAHRSFKVECLR 304 (873)
Q Consensus 239 ~l~~~l-~~k~~LlVlDdv~~~~~---------~~~-~~~~l~~~~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~ 304 (873)
.+...+ +.+++++|+|++++... +.. +...++.....+.+++||+|.... .........+++.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 122222 57899999999976432 111 222233312467899999998765 3333445689999999
Q ss_pred hhhhHHHHHHHh
Q 002863 305 YDDAWKLFELKV 316 (873)
Q Consensus 305 ~~e~~~lf~~~~ 316 (873)
+++..+++.+.+
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=1.1e-09 Score=103.87 Aligned_cols=120 Identities=25% Similarity=0.259 Sum_probs=57.2
Q ss_pred ceEEEEcCCCcccCCccc-cccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC
Q 002863 484 EKFLVLTGAGLTEAPSVG-MWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS 562 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n 562 (873)
..-+...+..++.+...+ .+.+++.|++++|.+..++....+++|++|++++|.++.+. ..+...+++|++|+|++|
T Consensus 21 ~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~--~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 21 LRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS--EGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp ---------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C--HHHHHH-TT--EEE-TTS
T ss_pred cccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc--cchHHhCCcCCEEECcCC
Confidence 455677788877776665 46799999999999999999999999999999999999886 444467999999999999
Q ss_pred CC-----CccccCcccCCEEecCCCCCCccch----hhhcCCCCcEeecccc
Q 002863 563 DL-----PCEISNLVSLQYLDLSNSIPDRLPL----GLKYLVNLKCLNLEYT 605 (873)
Q Consensus 563 ~l-----p~~i~~L~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~L~~~ 605 (873)
.| -..+..+++|++|+|.+|.+..-+. -+..+|+|+.||-...
T Consensus 99 ~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 99 KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp ---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 65 2456789999999999998887764 3788999999987543
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.89 E-value=1.4e-10 Score=123.32 Aligned_cols=167 Identities=28% Similarity=0.320 Sum_probs=99.9
Q ss_pred CcccEEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCcccCCEEecCCCCCCccchhhhcCCCCcEeec
Q 002863 526 PRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNL 602 (873)
Q Consensus 526 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 602 (873)
..-...+++.|.+..+| .-+..|..|..|.|..| .+|..+++|..|.+|||+.|.+..+|..++.|+ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~elp---~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELP---EEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccccCc---hHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 33445566666666665 22455556666666665 456666666666666666666666666666554 666666
Q ss_pred cccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCC
Q 002863 603 EYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGC 682 (873)
Q Consensus 603 ~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~ 682 (873)
++| +++.+|++ ++.+..|.+|+.+.|. ....+..++.+.+|+.|.+ ..+.+..+..... ...|..|+++.|
T Consensus 151 sNN-kl~~lp~~-ig~~~tl~~ld~s~ne--i~slpsql~~l~slr~l~v---rRn~l~~lp~El~--~LpLi~lDfScN 221 (722)
T KOG0532|consen 151 SNN-KLTSLPEE-IGLLPTLAHLDVSKNE--IQSLPSQLGYLTSLRDLNV---RRNHLEDLPEELC--SLPLIRLDFSCN 221 (722)
T ss_pred ecC-ccccCCcc-cccchhHHHhhhhhhh--hhhchHHhhhHHHHHHHHH---hhhhhhhCCHHHh--CCceeeeecccC
Confidence 666 66666665 6666666666666543 3345556666666666655 3333333332222 225777777777
Q ss_pred CCCCccccccccccccceEEeecC
Q 002863 683 RLEPFTIFSLASLRHLQTLHLVEC 706 (873)
Q Consensus 683 ~~~~~~~~~l~~l~~L~~L~l~~~ 706 (873)
++. .+|..|.+|++|++|.|.+|
T Consensus 222 kis-~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 222 KIS-YLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred cee-ecchhhhhhhhheeeeeccC
Confidence 664 34556777788888877764
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=7.5e-10 Score=108.35 Aligned_cols=130 Identities=19% Similarity=0.255 Sum_probs=84.7
Q ss_pred cCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccc
Q 002863 642 LGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMK 721 (873)
Q Consensus 642 ~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 721 (873)
...+.|+.++++.+....+. ....+.. .++.|+++.|.+.... .+..+++|+.|++++ |.++. ...|-
T Consensus 281 dTWq~LtelDLS~N~I~~iD---ESvKL~P-kir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~-N~Ls~-~~Gwh---- 348 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQID---ESVKLAP-KLRRLILSQNRIRTVQ--NLAELPQLQLLDLSG-NLLAE-CVGWH---- 348 (490)
T ss_pred chHhhhhhccccccchhhhh---hhhhhcc-ceeEEeccccceeeeh--hhhhcccceEeeccc-chhHh-hhhhH----
Confidence 34455667777544433332 2222222 6788888888776544 477788888888887 44443 22222
Q ss_pred cccCccccccccEEEEccccCCCcCcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcc
Q 002863 722 KIREIHGFHSLQNVYISHSKLRQVTWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLN 800 (873)
Q Consensus 722 ~~~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 800 (873)
..+-|+++|.|++|.+.+++.++.+-+|.+|++++|++.+ + +-...++.+|.|+.|.|.++|
T Consensus 349 -----~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~-l-----------deV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 349 -----LKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEE-L-----------DEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred -----hhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhh-H-----------HHhcccccccHHHHHhhcCCC
Confidence 3567888888888888888888888888888888887532 1 112467788888888887754
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.83 E-value=3.3e-08 Score=100.05 Aligned_cols=153 Identities=12% Similarity=0.163 Sum_probs=93.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI 243 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (873)
..+.+.|+|++|+|||+||+++++... . ....+.|+.+.... .... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~-~--~~~~~~y~~~~~~~---~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL-L--NQRTAIYIPLSKSQ---YFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-H--cCCCeEEeeHHHhh---hhhH-----------------------HHHhh
Confidence 345789999999999999999999862 1 12345666553110 0000 11111
Q ss_pred hccCCeEEEEeccccc---ccccc-ccccCCCCCCCCcEEEE-Eccc---------hhhhhccccccceeeccCChhhhH
Q 002863 244 LSKKKFVLLLDDMWEL---VDLDQ-VGLPIPSRTSVSNKVVF-TTRE---------FEVCGQMEAHRSFKVECLRYDDAW 309 (873)
Q Consensus 244 l~~k~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~gs~iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~e~~ 309 (873)
++ +.-+|||||+|.. ..|+. +...+......|..+|| |++. +++...+.....++++++++++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 3358999999863 34542 22222221123555544 5543 345555566678999999999999
Q ss_pred HHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002863 310 KLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVG 349 (873)
Q Consensus 310 ~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 349 (873)
+++++.+.......+ +++..-|++.+.|..-.+..+-
T Consensus 168 ~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 168 IVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 999998865432222 5667888898887665544433
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=5.7e-10 Score=115.18 Aligned_cols=155 Identities=21% Similarity=0.108 Sum_probs=103.6
Q ss_pred ccccceEEEEeecccccccc---ccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCCCcc-----ccCcc
Q 002863 501 GMWKDVTRMSLMDNKIKRLT---VSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDLPCE-----ISNLV 572 (873)
Q Consensus 501 ~~~~~l~~l~l~~~~~~~l~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~lp~~-----i~~L~ 572 (873)
..+++++.+++.+..+...+ ....|++++.|+|++|-+.++.+...+...+++|+.|+|+.|.+... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34567888888877766554 34778999999999998877765567778899999999999955222 23567
Q ss_pred cCCEEecCCCCCCc--cchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCcee
Q 002863 573 SLQYLDLSNSIPDR--LPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVL 650 (873)
Q Consensus 573 ~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 650 (873)
+|+.|.|+.|.+.. +-.-...+++|+.|+|..|..+..- .....-+..|++|++++++.+........+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-cchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 88888888886652 2233456788888888887322111 11134467788888887654444444555666666666
Q ss_pred EEEEcc
Q 002863 651 TITLHS 656 (873)
Q Consensus 651 ~l~~~~ 656 (873)
.++.++
T Consensus 277 nls~tg 282 (505)
T KOG3207|consen 277 NLSSTG 282 (505)
T ss_pred hccccC
Confidence 664433
No 41
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.78 E-value=7.7e-07 Score=101.13 Aligned_cols=295 Identities=15% Similarity=0.198 Sum_probs=160.1
Q ss_pred CCcccchhHHHHHHHHHHhc----C-CcEEEEEEeCCCCcHHHHHHHHHhhhccC--CCCCc--eEEEEEeCCcccHHHH
Q 002863 143 PPTVVGLQLTFDRVWRCLME----E-HVGIVGLYGMGGVGKTTLLTQINNRFFDT--PNHFD--FVIWVVVSRDLQLEKI 213 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~----~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~--~~~wv~~s~~~~~~~~ 213 (873)
|+.+.||++++++|...|.. . ...++.|+|++|+|||+.++.|.+..... ....+ .+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 56789999999999988864 2 23577899999999999999998765211 12222 3567777776788888
Q ss_pred HHHHHHHhCCCCccccccCHHHHHHHHHHHhc---cCCeEEEEeccccccc-ccc-ccccCCCCCCCCcEEEE--Eccch
Q 002863 214 QEIIAKKIGLFNESWKNKSMQEKAQQIFNILS---KKKFVLLLDDMWELVD-LDQ-VGLPIPSRTSVSNKVVF--TTREF 286 (873)
Q Consensus 214 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~-~~~-~~~~l~~~~~~gs~iiv--TtR~~ 286 (873)
...|.+++..... .......+....+...+. +...+||||+|+.... -+. +...+......+++|+| +|.+.
T Consensus 834 YqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 8999988843221 122233455556665552 2345899999975321 011 11111111023445443 44332
Q ss_pred hh--------hhccccccceeeccCChhhhHHHHHHHhcCCCCCCCC-ChHHHHHHHHHHhCCchhHHHHHHHHHhcCC-
Q 002863 287 EV--------CGQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHP-DIPELAETLAKDCGGLPLALITVGRAMASRK- 356 (873)
Q Consensus 287 ~v--------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~-~~~~~~~~i~~~c~glPLai~~~~~~l~~~~- 356 (873)
+. ...++ ...+..++++.++-.+++..++.......++ -++-+|+.++...|-.-.|+.++-.+...+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 22 12222 2346779999999999999988643211122 2223333333334446677776665554321
Q ss_pred ---ChHHHHHHHHHHHchhcccCCchhHHHHHhhhccccCCcchhHHHHhhhcc--CC--CCccccHHHHHHHH--HHc-
Q 002863 357 ---TPREWEHAIEVLRSSASKFAGMEKRVFSRLKFSFDFLPSDATRFCLLYCTL--FP--EDYRISIEDLIDCW--ICE- 426 (873)
Q Consensus 357 ---~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~--fp--~~~~i~~~~Li~~W--~ae- 426 (873)
..+.-+.+.+.+.. ..+.-....||. +.| +||++.+ .- ....++...+-... +++
T Consensus 992 skVT~eHVrkAleeiE~-------------srI~e~IktLPl-HqK-LVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~ 1056 (1164)
T PTZ00112 992 QKIVPRDITEATNQLFD-------------SPLTNAINYLPW-PFK-MFLTCLIVELRMLNDFIIPYKKVLNRYKVLVET 1056 (1164)
T ss_pred CccCHHHHHHHHHHHHh-------------hhHHHHHHcCCH-HHH-HHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHh
Confidence 11222222221111 112234467887 444 4555322 11 22245555554333 333
Q ss_pred -C-CccCCChhhHHHHHHHHHHHHHHccccccc
Q 002863 427 -G-FLDDHDGIEARNQGYSLIRNLLHACLLEEE 457 (873)
Q Consensus 427 -g-~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 457 (873)
| .+... ...+ ....++.+|...+++-..
T Consensus 1057 ~Gk~iGv~--plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1057 SGKYIGMC--SNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred hhhhcCCC--CcHH-HHHHHHHHHHhcCeEEec
Confidence 1 11111 1222 677888999999887554
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.7e-09 Score=111.80 Aligned_cols=209 Identities=22% Similarity=0.213 Sum_probs=123.5
Q ss_pred CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC------CccccCcccCCEEecCCCCCCccchh--hhcC
Q 002863 523 PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL------PCEISNLVSLQYLDLSNSIPDRLPLG--LKYL 594 (873)
Q Consensus 523 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l------p~~i~~L~~L~~L~L~~~~i~~lp~~--i~~l 594 (873)
.++++|+...|.++.....+. ......|++++.||||+|-+ -.-...|++|+.|+|+.|.+.....+ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~-~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGI-EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccch-hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 667888888888887655542 14567888888888888822 33446677888888887655433322 2245
Q ss_pred CCCcEeeccccccccccC-hhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCC
Q 002863 595 VNLKCLNLEYTFRLSRIS-PQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSIS 673 (873)
Q Consensus 595 ~~L~~L~L~~~~~l~~l~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~ 673 (873)
++|+.|.|+.| .++.-. ......+++|+.|++..|..... .. . ...-...
T Consensus 197 ~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~-------------------------~~-~--~~~i~~~ 247 (505)
T KOG3207|consen 197 SHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILI-------------------------KA-T--STKILQT 247 (505)
T ss_pred hhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccce-------------------------ec-c--hhhhhhH
Confidence 66666666666 443211 11123456666666655421000 00 0 0000115
Q ss_pred cceEEecCCCCCCcc-ccccccccccceEEeecCCCCcce-eeccccccccccCccccccccEEEEccccCCCcC---cc
Q 002863 674 IPSLCLRGCRLEPFT-IFSLASLRHLQTLHLVECNDLEDF-MIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT---WL 748 (873)
Q Consensus 674 L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~---~l 748 (873)
|+.|+|++|++.... ......++.|+.|+++.| .++++ .|+. ........+++|+.|++..|++..++ .+
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~----~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l 322 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDV----ESLDKTHTFPKLEYLNISENNIRDWRSLNHL 322 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCc----cchhhhcccccceeeecccCccccccccchh
Confidence 777888888765433 234667888888888874 34432 1111 11122256889999999999776665 44
Q ss_pred cccCCCcEEeeccCccch
Q 002863 749 ILAPNLKHLEVQNCPYME 766 (873)
Q Consensus 749 ~~l~~L~~L~L~~~~~~~ 766 (873)
..+++|+.|.+..|++.+
T Consensus 323 ~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 323 RTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccchhhhhhcccccccc
Confidence 557888888877776554
No 43
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.76 E-value=4.8e-07 Score=93.62 Aligned_cols=219 Identities=21% Similarity=0.190 Sum_probs=120.2
Q ss_pred cccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCC
Q 002863 145 TVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLF 224 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 224 (873)
+++|.+..+.+ .+..+.+.-..+||++|+||||||+.+.... ...| ..+|...+-.+-++.+++...
T Consensus 31 HLlg~~~~lrr---~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~gvkdlr~i~e~a~-- 97 (436)
T COG2256 31 HLLGEGKPLRR---AVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSGVKDLREIIEEAR-- 97 (436)
T ss_pred hhhCCCchHHH---HHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEeccccccHHHHHHHHHHHH--
Confidence 34444444433 4455778888899999999999999999876 3444 333433222222222222210
Q ss_pred CccccccCHHHHHHHHHHHhccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEE--Eccchhhh---hccccccc
Q 002863 225 NESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVF--TTREFEVC---GQMEAHRS 297 (873)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv--TtR~~~v~---~~~~~~~~ 297 (873)
.....|++.+|++|.|+.- .+-+.+ +|.- ..|.-|+| ||-++... .......+
T Consensus 98 ----------------~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~v-E~G~iilIGATTENPsF~ln~ALlSR~~v 157 (436)
T COG2256 98 ----------------KNRLLGRRTILFLDEIHRFNKAQQDAL---LPHV-ENGTIILIGATTENPSFELNPALLSRARV 157 (436)
T ss_pred ----------------HHHhcCCceEEEEehhhhcChhhhhhh---hhhh-cCCeEEEEeccCCCCCeeecHHHhhhhhe
Confidence 1223489999999999753 223333 3333 45666665 67776432 22345678
Q ss_pred eeeccCChhhhHHHHHHHhcCCCC--C-CCCCh-HHHHHHHHHHhCCchh-HHHHH--HHHHhcCCChHHHHHHHHHHHc
Q 002863 298 FKVECLRYDDAWKLFELKVGADTL--D-SHPDI-PELAETLAKDCGGLPL-ALITV--GRAMASRKTPREWEHAIEVLRS 370 (873)
Q Consensus 298 ~~l~~L~~~e~~~lf~~~~~~~~~--~-~~~~~-~~~~~~i~~~c~glPL-ai~~~--~~~l~~~~~~~~w~~~~~~l~~ 370 (873)
+.+++|+.++-.+++.+.+..... . ....+ ++....+++.++|--- |+..+ +..+.........+.+.+.++.
T Consensus 158 f~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~ 237 (436)
T COG2256 158 FELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQR 237 (436)
T ss_pred eeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhh
Confidence 999999999999999985432221 1 11222 3466778889988543 33332 2222222111112222223333
Q ss_pred hhcccCCch---hHHHHHhhhccccCCcc
Q 002863 371 SASKFAGME---KRVFSRLKFSFDFLPSD 396 (873)
Q Consensus 371 ~~~~~~~~~---~~i~~~l~~sy~~L~~~ 396 (873)
.....+... =++.+++.-|...-.++
T Consensus 238 ~~~~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 238 RSARFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred hhhccCCCcchHHHHHHHHHHhhccCCcC
Confidence 222222111 25667777777776653
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.74 E-value=1.2e-09 Score=109.80 Aligned_cols=36 Identities=31% Similarity=0.200 Sum_probs=18.9
Q ss_pred CcccCCEEecCCCCCCc-----cchhhhcCCCCcEeecccc
Q 002863 570 NLVSLQYLDLSNSIPDR-----LPLGLKYLVNLKCLNLEYT 605 (873)
Q Consensus 570 ~L~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~ 605 (873)
.+++|++||||.|-++. +-.-+..++.|++|.|.+|
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 44456666666553321 2223455666666666666
No 45
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.71 E-value=3.4e-07 Score=101.55 Aligned_cols=175 Identities=17% Similarity=0.142 Sum_probs=105.2
Q ss_pred CcccchhHHHHH---HHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHH
Q 002863 144 PTVVGLQLTFDR---VWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKK 220 (873)
Q Consensus 144 ~~~vgr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 220 (873)
++++|.+..+.. +..++..+....+.++|++|+||||+|+.+++.. ...| +.++....-..-.+.+.+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii~~ 83 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVIEE 83 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHHHH
Confidence 458898887666 7777777777788899999999999999999876 2232 2222211111111122111
Q ss_pred hCCCCccccccCHHHHHHHHHH-HhccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEE--Eccchhhh---hcc
Q 002863 221 IGLFNESWKNKSMQEKAQQIFN-ILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVF--TTREFEVC---GQM 292 (873)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iiv--TtR~~~v~---~~~ 292 (873)
... ...+++.+|++|+++... ..+.+...+. .|..++| ||.+.... ...
T Consensus 84 -------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 84 -------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred -------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHHHh
Confidence 111 124678899999998642 2333333332 2344444 34443211 112
Q ss_pred ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002863 293 EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVG 349 (873)
Q Consensus 293 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 349 (873)
.....+.+.+++.++.+.++.+.+.........-.++..+.|++.|+|.|..+..+.
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 234678999999999999999876432100002225667889999999887665443
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.70 E-value=1.3e-08 Score=113.14 Aligned_cols=175 Identities=28% Similarity=0.374 Sum_probs=89.2
Q ss_pred hcCCcceEEecCCC---CCCccccCcc-cCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccce
Q 002863 549 KSMASLRVLKLSHS---DLPCEISNLV-SLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRV 624 (873)
Q Consensus 549 ~~l~~Lr~L~L~~n---~lp~~i~~L~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~ 624 (873)
..++.+..|++.+| .+|...+.+. +|+.|++++|.+..+|..++.+++|+.|++++| .+..+|+. .+.+++|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKL-LSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhh-hhhhhhhhh
Confidence 34455666666655 4455555553 666666666666666655666666666666666 56666553 335566666
Q ss_pred EeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEee
Q 002863 625 LRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLV 704 (873)
Q Consensus 625 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 704 (873)
|+++++. ....+..+..+. .|++|.+++|... ..+..+..+.++..|.+.
T Consensus 191 L~ls~N~--i~~l~~~~~~~~---------------------------~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 191 LDLSGNK--ISDLPPEIELLS---------------------------ALEELDLSNNSII-ELLSSLSNLKNLSGLELS 240 (394)
T ss_pred eeccCCc--cccCchhhhhhh---------------------------hhhhhhhcCCcce-ecchhhhhcccccccccC
Confidence 6665532 111111111111 2333333333211 111234444555555544
Q ss_pred cCCCCcceeeccccccccccCccccccccEEEEccccCCCcCcccccCCCcEEeeccCccch
Q 002863 705 ECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVTWLILAPNLKHLEVQNCPYME 766 (873)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~~~ 766 (873)
+ +.+..+ +..+ ..+++|+.|++++|.++.++.++.+.+|+.|+++++....
T Consensus 241 ~-n~~~~~-~~~~---------~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 241 N-NKLEDL-PESI---------GNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred C-ceeeec-cchh---------ccccccceeccccccccccccccccCccCEEeccCccccc
Confidence 3 322211 1222 4556677777777776666666666777777777665543
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.70 E-value=1.2e-07 Score=96.68 Aligned_cols=169 Identities=12% Similarity=0.092 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc
Q 002863 149 LQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW 228 (873)
Q Consensus 149 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 228 (873)
.+..++.+.+++.......|.|+|++|+|||+||+.+++... ......+++.++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-----------
Confidence 445677777776556677899999999999999999998762 2223445565443211 00
Q ss_pred cccCHHHHHHHHHHHhccCCeEEEEecccccc---ccc-cccccCCCCCCCCcEEEEEccchh---------hhhccccc
Q 002863 229 KNKSMQEKAQQIFNILSKKKFVLLLDDMWELV---DLD-QVGLPIPSRTSVSNKVVFTTREFE---------VCGQMEAH 295 (873)
Q Consensus 229 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~-~~~~~l~~~~~~gs~iivTtR~~~---------v~~~~~~~ 295 (873)
..+...+.+ .-+||+||++... .|. .+...+......+.++|+||+... +...+...
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 011111222 3489999997543 222 233222221123347889888532 12222234
Q ss_pred cceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHH
Q 002863 296 RSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGR 350 (873)
Q Consensus 296 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 350 (873)
..+++.++++++...++++.+....... -++..+.+++.+.|.|..+..+..
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQL---PDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHH
Confidence 5789999999999999987654322111 245567888888888877665543
No 48
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.70 E-value=1.8e-07 Score=111.63 Aligned_cols=288 Identities=16% Similarity=0.180 Sum_probs=165.5
Q ss_pred ccchhHHHHHHHHHHhc---CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCccc---HHHHHHHHHH
Q 002863 146 VVGLQLTFDRVWRCLME---EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ---LEKIQEIIAK 219 (873)
Q Consensus 146 ~vgr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~---~~~~~~~i~~ 219 (873)
++||+.+++.|...+.+ +...|+.+.|..|||||+++++|.....+.+..|-...+-....+.. ..+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 68999999999988864 56679999999999999999999988733322222111111222211 2233444444
Q ss_pred Hh-------------------CCCCcc--------------------ccccCHHH-----HHHHHHHHh-ccCCeEEEEe
Q 002863 220 KI-------------------GLFNES--------------------WKNKSMQE-----KAQQIFNIL-SKKKFVLLLD 254 (873)
Q Consensus 220 ~l-------------------~~~~~~--------------------~~~~~~~~-----~~~~l~~~l-~~k~~LlVlD 254 (873)
++ |..... ......+. ....+..+. +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 211100 00000111 112222233 4569999999
Q ss_pred ccc-cc-cccccccccCCCC---CCCCcEEEE--Eccch--hhhhccccccceeeccCChhhhHHHHHHHhcCCCCCCCC
Q 002863 255 DMW-EL-VDLDQVGLPIPSR---TSVSNKVVF--TTREF--EVCGQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHP 325 (873)
Q Consensus 255 dv~-~~-~~~~~~~~~l~~~---~~~gs~iiv--TtR~~--~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~ 325 (873)
|+. -+ ..++-+...+... ......|.. |.+.. .+-........|.|.||+..+...+.....+... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 993 22 1121111111110 000112322 22221 1122223456899999999999999998886533 2
Q ss_pred ChHHHHHHHHHHhCCchhHHHHHHHHHhcC------CChHHHHHHHHHHHchhcccCCchhHHHHHhhhccccCCcchhH
Q 002863 326 DIPELAETLAKDCGGLPLALITVGRAMASR------KTPREWEHAIEVLRSSASKFAGMEKRVFSRLKFSFDFLPSDATR 399 (873)
Q Consensus 326 ~~~~~~~~i~~~c~glPLai~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k 399 (873)
-..+..+.|+++.+|+|+.+..+-..+... .+...|..-...+. ..+.-+.+...+..-.+.||. ..+
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-----~~~~~~~vv~~l~~rl~kL~~-~t~ 311 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-----ILATTDAVVEFLAARLQKLPG-TTR 311 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC-----CchhhHHHHHHHHHHHhcCCH-HHH
Confidence 235668999999999999999999988874 34455553221111 111112466678889999999 789
Q ss_pred HHHhhhccCCCCccccHHHHHHHHHHcCCccCCChhhHHHHHHHHHHHHHHccccc
Q 002863 400 FCLLYCTLFPEDYRISIEDLIDCWICEGFLDDHDGIEARNQGYSLIRNLLHACLLE 455 (873)
Q Consensus 400 ~cfl~~~~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~ 455 (873)
..+-..|++-.. |+...|...|- ......+...++.|....++.
T Consensus 312 ~Vl~~AA~iG~~--F~l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~ 355 (849)
T COG3899 312 EVLKAAACIGNR--FDLDTLAALAE----------DSPALEAAALLDALQEGLILP 355 (849)
T ss_pred HHHHHHHHhCcc--CCHHHHHHHHh----------hchHHHHHHHHHHhHhhceec
Confidence 999998888654 44555555441 123445555566666555554
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.68 E-value=9.1e-10 Score=113.11 Aligned_cols=277 Identities=19% Similarity=0.236 Sum_probs=145.4
Q ss_pred CcccEEEecCCccccCCCCchhhhcCCcceEEecCCC-CCCcc-----ccCcccCCEEecCCC-CCCccc--hhhhcCCC
Q 002863 526 PRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS-DLPCE-----ISNLVSLQYLDLSNS-IPDRLP--LGLKYLVN 596 (873)
Q Consensus 526 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n-~lp~~-----i~~L~~L~~L~L~~~-~i~~lp--~~i~~l~~ 596 (873)
..|+.|.+.++.-....+...+-..++++.+|++.++ .+.+. -..+++|++|+|..| .++..- .-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4688888888874444433566788999999998888 44322 235677888888764 333321 12345778
Q ss_pred CcEeeccccccccccCh-hhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcc
Q 002863 597 LKCLNLEYTFRLSRISP-QVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIP 675 (873)
Q Consensus 597 L~~L~L~~~~~l~~l~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~ 675 (873)
|.+|+++.|..++.-.- .....+.+|+.+.+.||.......+.... .... -+.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~-------------------------~~~~-~i~ 271 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA-------------------------AYCL-EIL 271 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh-------------------------ccCh-Hhh
Confidence 88888888755544110 01344555665555555322221111111 0000 123
Q ss_pred eEEecCCC-CCCcccccc-ccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccc-cCCCc--Ccc-c
Q 002863 676 SLCLRGCR-LEPFTIFSL-ASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHS-KLRQV--TWL-I 749 (873)
Q Consensus 676 ~L~L~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~l--~~l-~ 749 (873)
.+++..|. +++.....+ ..+..|+.|+.++|..+++.....++ .+.++|+.|.+++| ++++. ..+ .
T Consensus 272 ~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg--------~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 272 KLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG--------QHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred ccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh--------cCCCceEEEeccccchhhhhhhhhhhc
Confidence 33333332 111111111 23456666666666666655444443 45566777777776 55553 222 2
Q ss_pred ccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCccccccc-----ccCCCCCCCccEEeEccCc
Q 002863 750 LAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNI-----CSNALPFPRLKEMSVHECS 824 (873)
Q Consensus 750 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l-----~~~~~~~~~L~~L~l~~c~ 824 (873)
+++.|+.|++.+|....+. .+.....++|.|+.|.++.|..++.- .....++..|+.+.+.+||
T Consensus 344 n~~~Le~l~~e~~~~~~d~-----------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDG-----------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred CChhhhhhcccccceehhh-----------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 4566777776666554332 01123345667777777666555433 2222345566667777777
Q ss_pred CcccCcCCC---cCCCCcceEEechH
Q 002863 825 KLRQLALDC---NCGLERKIIIEAEE 847 (873)
Q Consensus 825 ~L~~L~l~~---n~~l~~l~~~~~~~ 847 (873)
.++.--+.. ++.++.+..+.|..
T Consensus 413 ~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 413 LITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CchHHHHHHHhhCcccceeeeechhh
Confidence 666533332 23355555555543
No 50
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=1.2e-06 Score=99.15 Aligned_cols=185 Identities=15% Similarity=0.169 Sum_probs=113.0
Q ss_pred CcccchhHHHHHHHHHHhcCC-cEEEEEEeCCCCcHHHHHHHHHhhhccCCCC-------------------CceEEEEE
Q 002863 144 PTVVGLQLTFDRVWRCLMEEH-VGIVGLYGMGGVGKTTLLTQINNRFFDTPNH-------------------FDFVIWVV 203 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 203 (873)
+++||.+..++.|.+++..++ ...+.++|..|+||||+|+.+.+.. ..... |..++++.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL-nCe~~~~~~PCG~C~sCr~I~~G~h~DviEID 94 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL-NCETGVTSQPCGVCRACREIDEGRFVDYVEMD 94 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCccCCCCCCCcccHHHHHHhcCCCceEEEec
Confidence 358999999999999998765 4466799999999999999888765 11111 11122222
Q ss_pred eCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEE
Q 002863 204 VSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVF 281 (873)
Q Consensus 204 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iiv 281 (873)
.+....+.++ +.+++.... .-..++.-++|||+++... .+..+...+..- ....++|+
T Consensus 95 Aas~rgVDdI-ReLIe~a~~------------------~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP-P~~v~FIL 154 (830)
T PRK07003 95 AASNRGVDEM-AALLERAVY------------------APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-PPHVKFIL 154 (830)
T ss_pred ccccccHHHH-HHHHHHHHh------------------ccccCCceEEEEeChhhCCHHHHHHHHHHHHhc-CCCeEEEE
Confidence 2211111111 111111100 0012455689999998653 355554444333 44668777
Q ss_pred Eccchh-hh-hccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch-hHHHHHHHHH
Q 002863 282 TTREFE-VC-GQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP-LALITVGRAM 352 (873)
Q Consensus 282 TtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l 352 (873)
||++.+ +. ........+++..++.++..+.+.+.+....... -.+..+.|++.++|.. -|+..+-..+
T Consensus 155 aTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 155 ATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred EECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 777643 32 2223457899999999999999998876544222 2456788999999854 5665544433
No 51
>PRK04195 replication factor C large subunit; Provisional
Probab=98.65 E-value=1.5e-06 Score=98.32 Aligned_cols=174 Identities=18% Similarity=0.195 Sum_probs=108.2
Q ss_pred CcccchhHHHHHHHHHHhcC----CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLMEE----HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 219 (873)
++++|.++.++++.+|+..- ..+.+.|+|++|+||||+|+.+++.. .|+ .+-+..++......+ ..++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~~i-~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTADVI-ERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHHHH-HHHHH
Confidence 45899999999999998642 26789999999999999999999986 233 233444443332222 22222
Q ss_pred HhCCCCccccccCHHHHHHHHHHHhc-cCCeEEEEeccccccc------cccccccCCCCCCCCcEEEEEccchh-hhh-
Q 002863 220 KIGLFNESWKNKSMQEKAQQIFNILS-KKKFVLLLDDMWELVD------LDQVGLPIPSRTSVSNKVVFTTREFE-VCG- 290 (873)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~------~~~~~~~l~~~~~~gs~iivTtR~~~-v~~- 290 (873)
...... .+. .++-+||+|+++.... +..+...+.. .+..||+|+.+.. ...
T Consensus 87 ~~~~~~-----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~---~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 87 EAATSG-----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK---AKQPIILTANDPYDPSLR 146 (482)
T ss_pred HhhccC-----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc---CCCCEEEeccCccccchh
Confidence 211100 011 3678999999976422 3333333322 2345666664432 111
Q ss_pred -ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHH
Q 002863 291 -QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALIT 347 (873)
Q Consensus 291 -~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 347 (873)
.-.....+++.+++.++....+.+.+.......+ .+....|++.++|-.-.+..
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1123467899999999999999888755442222 46689999999996655443
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=6.3e-09 Score=102.01 Aligned_cols=99 Identities=26% Similarity=0.236 Sum_probs=50.6
Q ss_pred CcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC--CccccCcccCCEEecCCCCCCccchhhhcCCCCcEeecc
Q 002863 526 PRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL--PCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLE 603 (873)
Q Consensus 526 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l--p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 603 (873)
..|++++|++|.++.+. ...+-.|.+|+|++|+|.| -..+..|++|+.||||+|.+.++-..-.+|-|+++|.|+
T Consensus 284 q~LtelDLS~N~I~~iD---ESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQID---ESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhh---hhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 34555555555555443 3344455555555555533 233455555555555555555544444455555555555
Q ss_pred ccccccccChhhhCCCcccceEecccc
Q 002863 604 YTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 604 ~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
+| .+..+.. ++++-+|..|++.+|
T Consensus 361 ~N-~iE~LSG--L~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 361 QN-KIETLSG--LRKLYSLVNLDLSSN 384 (490)
T ss_pred hh-hHhhhhh--hHhhhhheecccccc
Confidence 55 4444432 555555555555543
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.59 E-value=1.2e-08 Score=102.71 Aligned_cols=83 Identities=24% Similarity=0.326 Sum_probs=54.4
Q ss_pred hhcCCcceEEecCCCCC--------CccccCcccCCEEecCCC----CCCccchh-------hhcCCCCcEeeccccccc
Q 002863 548 FKSMASLRVLKLSHSDL--------PCEISNLVSLQYLDLSNS----IPDRLPLG-------LKYLVNLKCLNLEYTFRL 608 (873)
Q Consensus 548 ~~~l~~Lr~L~L~~n~l--------p~~i~~L~~L~~L~L~~~----~i~~lp~~-------i~~l~~L~~L~L~~~~~l 608 (873)
...+..+..|+||+|.+ .+.+.+.++|+.-++|+- ...++|+. +-.+++|++||||.| .+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-cc
Confidence 34556666666666633 334556667777777743 23445543 446789999999999 44
Q ss_pred ccc-Ch---hhhCCCcccceEeccccC
Q 002863 609 SRI-SP---QVISNLKMLRVLRMFECG 631 (873)
Q Consensus 609 ~~l-~~---~~i~~l~~L~~L~l~~~~ 631 (873)
..- ++ ..+.++++|++|++.+|+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC
Confidence 321 11 236789999999999884
No 54
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.4e-06 Score=90.54 Aligned_cols=204 Identities=16% Similarity=0.206 Sum_probs=131.1
Q ss_pred CCcccchhHHHHHHHHHHhc----CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHH
Q 002863 143 PPTVVGLQLTFDRVWRCLME----EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIA 218 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 218 (873)
|+.+.+|+++++++...|.. +...-+.|+|.+|+|||+.++.|.+.........+ +++|.+-...+..+++..|+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 45589999999999988764 33344889999999999999999998733223333 78999999999999999999
Q ss_pred HHhCCCCccccccCHHHHHHHHHHHhc--cCCeEEEEeccccccccc--cccccCCCCCCCCcEE--EEEccchhhh---
Q 002863 219 KKIGLFNESWKNKSMQEKAQQIFNILS--KKKFVLLLDDMWELVDLD--QVGLPIPSRTSVSNKV--VFTTREFEVC--- 289 (873)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~--~~~~~l~~~~~~gs~i--ivTtR~~~v~--- 289 (873)
.+++..+. ......+....+.+.+. ++.+++|||+++...+-. -+-..+.......++| |..+-+..+.
T Consensus 95 ~~~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 95 NKLGKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHcCCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 99973221 34556666777777774 588999999997643321 1111111111123443 3344433322
Q ss_pred -----hccccccceeeccCChhhhHHHHHHHhcCC--CCCCCCChHHHHHHHHHHhCC-chhHHHHHHH
Q 002863 290 -----GQMEAHRSFKVECLRYDDAWKLFELKVGAD--TLDSHPDIPELAETLAKDCGG-LPLALITVGR 350 (873)
Q Consensus 290 -----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~ 350 (873)
..++.. .+..++.+.+|-...+..++... ....+...-+++..++..-+| .-.|+..+-+
T Consensus 173 d~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 173 DPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred hhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 222223 37899999999999999887432 112334444445555555554 4556555533
No 55
>PF13173 AAA_14: AAA domain
Probab=98.55 E-value=1.4e-07 Score=85.99 Aligned_cols=119 Identities=16% Similarity=0.196 Sum_probs=80.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL 244 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (873)
.+++.|.|+.|+||||++++++.+. . ....+++++..+........ .+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~~------------------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLAD------------------PD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHhh------------------hh-hHHHHHHhh
Confidence 4689999999999999999999887 2 34556777666543211100 00 122233333
Q ss_pred ccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhhhc------cccccceeeccCChhh
Q 002863 245 SKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVCGQ------MEAHRSFKVECLRYDD 307 (873)
Q Consensus 245 ~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~e 307 (873)
..++.+++||++....+|......+.+. ....+|++|+........ .+....+++.||+-.|
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~-~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDN-GPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHh-ccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 3477889999999988888877666665 456799999987655422 1234467899998776
No 56
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=1.7e-06 Score=92.36 Aligned_cols=177 Identities=13% Similarity=0.178 Sum_probs=115.5
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhc---cCCCCCceEEEEEe-CCcccHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFF---DTPNHFDFVIWVVV-SRDLQLEKIQEIIA 218 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~f~~~~wv~~-s~~~~~~~~~~~i~ 218 (873)
++++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+++... ....|+|...|... +......++. ++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHH
Confidence 3578999999999999987654 5778999999999999999988541 12356676666542 2333333422 233
Q ss_pred HHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccc--ccccccccccCCCCCCCCcEEEEEccchhhh--hcccc
Q 002863 219 KKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWE--LVDLDQVGLPIPSRTSVSNKVVFTTREFEVC--GQMEA 294 (873)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~--~~~~~ 294 (873)
+.+...+ ..+++-++|+|+++. ...+..+...+... ..++.+|++|.+.+.. .....
T Consensus 83 ~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEep-p~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 83 EEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP-PKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCC-CCCeEEEEEeCChHhCcHHHHhh
Confidence 3332111 124555677777653 34566666666654 6778888888665422 11234
Q ss_pred ccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHH
Q 002863 295 HRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALIT 347 (873)
Q Consensus 295 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 347 (873)
...+++.++++++....+.+.+.... ++.+..++..++|.|..+..
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHH
Confidence 57899999999999888876543111 33467889999999876543
No 57
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.52 E-value=2e-06 Score=93.58 Aligned_cols=193 Identities=15% Similarity=0.143 Sum_probs=108.9
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCc-eEEEEEeCCcccHHHHHHHHH----
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD-FVIWVVVSRDLQLEKIQEIIA---- 218 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~---- 218 (873)
+.++|++..++.+..++..+..+.+.++|++|+||||+|+.+.+.. . ...+. ..+.+++++-.. .....+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l-~-~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL-Y-GDPWENNFTEFNVADFFD--QGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh-c-CcccccceEEechhhhhh--cchhhhhcCcc
Confidence 4589999999999999887776678899999999999999998876 2 22222 233444432110 0000000
Q ss_pred --HHhCCCCccccccCHHHHHHHHHHHh------ccCCeEEEEeccccccc--cccccccCCCCCCCCcEEEEEccch-h
Q 002863 219 --KKIGLFNESWKNKSMQEKAQQIFNIL------SKKKFVLLLDDMWELVD--LDQVGLPIPSRTSVSNKVVFTTREF-E 287 (873)
Q Consensus 219 --~~l~~~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~~gs~iivTtR~~-~ 287 (873)
...+... . ......+..+.+.+.. .+.+-+||+||+..... ...+...+... ...+++|+||... .
T Consensus 91 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~-~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 91 FAHFLGTDK-R-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY-SRTCRFIIATRQPSK 167 (337)
T ss_pred hhhhhhhhh-h-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc-cCCCeEEEEeCChhh
Confidence 0000000 0 0001111222221111 23455899999965421 22333333222 3446788777543 2
Q ss_pred hhhcc-ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHH
Q 002863 288 VCGQM-EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALI 346 (873)
Q Consensus 288 v~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 346 (873)
+.... .....+.+.+++.++...++.+.+.......+ .+....+++.++|.+-.+.
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 22211 23456889999999999999887654432222 4568889999988665443
No 58
>PRK08727 hypothetical protein; Validated
Probab=98.52 E-value=1.5e-06 Score=88.25 Aligned_cols=167 Identities=10% Similarity=0.055 Sum_probs=96.6
Q ss_pred ccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCC
Q 002863 146 VVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFN 225 (873)
Q Consensus 146 ~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 225 (873)
++|-......+...........+.|+|..|+|||+|++++++.. ..+ ...+.|+++.+ ....+.+
T Consensus 22 ~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~-~~~--~~~~~y~~~~~------~~~~~~~------ 86 (233)
T PRK08727 22 IAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA-EQA--GRSSAYLPLQA------AAGRLRD------ 86 (233)
T ss_pred cCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH-HHc--CCcEEEEeHHH------hhhhHHH------
Confidence 34444444444443333334569999999999999999999876 222 23455665322 1111110
Q ss_pred ccccccCHHHHHHHHHHHhccCCeEEEEecccccc---ccccc-cccCCCCCCCCcEEEEEccch---------hhhhcc
Q 002863 226 ESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV---DLDQV-GLPIPSRTSVSNKVVFTTREF---------EVCGQM 292 (873)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~~-~~~l~~~~~~gs~iivTtR~~---------~v~~~~ 292 (873)
..+.+ .+.-+||+||+.... .|+.. ...+......|..||+|++.. ++...+
T Consensus 87 --------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl 151 (233)
T PRK08727 87 --------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL 151 (233)
T ss_pred --------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH
Confidence 11111 233589999996432 23221 111111112456799999853 222233
Q ss_pred ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHH
Q 002863 293 EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLAL 345 (873)
Q Consensus 293 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 345 (873)
.....+++++++.++-.+++++++.......+ ++....|++.+.|-.-.+
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 34568899999999999999987754332222 456788888888755443
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=6.4e-09 Score=102.07 Aligned_cols=61 Identities=23% Similarity=0.263 Sum_probs=32.6
Q ss_pred ccccccEEEEccc-cCCC--cCcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcc
Q 002863 728 GFHSLQNVYISHS-KLRQ--VTWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLN 800 (873)
Q Consensus 728 ~l~~L~~L~L~~~-~l~~--l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 800 (873)
.+|+|.+|+|+.| .++. +..+.+++.|++|.++.|..+. +...-.+...|+|.+|++.+|-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~------------p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII------------PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC------------hHHeeeeccCcceEEEEecccc
Confidence 4556666666665 4443 1244556666666666665431 0111245556666666666654
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.50 E-value=2.1e-07 Score=94.11 Aligned_cols=93 Identities=19% Similarity=0.183 Sum_probs=62.8
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc--ccHHHHHHHHH-----HHhCCCCccccccCHHH
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD--LQLEKIQEIIA-----KKIGLFNESWKNKSMQE 235 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~-----~~l~~~~~~~~~~~~~~ 235 (873)
.....++|+|++|+|||||++++++.. .. .+|+.++|+++..+ +++.++++.+. .+++.+... ...-...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~-~~~~~~~ 90 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER-HVQVAEM 90 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-HHHHHHH
Confidence 345689999999999999999999987 33 48999999998777 78999999983 333321100 0000011
Q ss_pred HHHHHHHH-hccCCeEEEEecccc
Q 002863 236 KAQQIFNI-LSKKKFVLLLDDMWE 258 (873)
Q Consensus 236 ~~~~l~~~-l~~k~~LlVlDdv~~ 258 (873)
.......+ -.|++.++++|++..
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHH
Confidence 11122221 258999999999954
No 61
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.50 E-value=1.2e-07 Score=105.57 Aligned_cols=186 Identities=26% Similarity=0.326 Sum_probs=112.5
Q ss_pred EEeecccc-ccccccCCCCcccEEEecCCccccCCCCchhhhcCC-cceEEecCCCC---CCccccCcccCCEEecCCCC
Q 002863 509 MSLMDNKI-KRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMA-SLRVLKLSHSD---LPCEISNLVSLQYLDLSNSI 583 (873)
Q Consensus 509 l~l~~~~~-~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~-~Lr~L~L~~n~---lp~~i~~L~~L~~L~L~~~~ 583 (873)
+....+.+ .........+.+..|++.+|.++.+++ ....++ +|+.|++++|. +|..++.+++|+.|++++|.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~---~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP---LIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCcc---ccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 44444444 333333444667777777777776662 123342 67777777773 34567777777777777777
Q ss_pred CCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHh
Q 002863 584 PDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRL 663 (873)
Q Consensus 584 i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 663 (873)
+..+|...+.+++|+.|++++| .+..+|.. ++.+..|++|.+.++. ....+..+.++.++..+.+..+. +..+
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~--~~~~~~~~~~~~~l~~l~l~~n~---~~~~ 247 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNNS--IIELLSSLSNLKNLSGLELSNNK---LEDL 247 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCCc--ceecchhhhhcccccccccCCce---eeec
Confidence 7777776667777777777777 67777764 4555667777776642 22334445555555555542221 1111
Q ss_pred hccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCC
Q 002863 664 LSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECN 707 (873)
Q Consensus 664 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 707 (873)
. .......+++.|++++|.+..... +..+.+|+.|+++++.
T Consensus 248 ~-~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 248 P-ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNS 288 (394)
T ss_pred c-chhccccccceecccccccccccc--ccccCccCEEeccCcc
Confidence 1 111112257888888888776554 7778888899888843
No 62
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.49 E-value=7.4e-09 Score=110.38 Aligned_cols=210 Identities=25% Similarity=0.264 Sum_probs=148.5
Q ss_pred EEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccc
Q 002863 530 TLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTF 606 (873)
Q Consensus 530 ~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~ 606 (873)
+|.|++-.++.+|..... ..+..-...||+.| .+|..++.+..|+.|.|..|.+..+|..++++..|.+|||+.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N- 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAAS-YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN- 131 (722)
T ss_pred ccccccchhhcCCCcccc-ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-
Confidence 355566666666621111 34445566788888 6799999999999999999999999999999999999999999
Q ss_pred cccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCC
Q 002863 607 RLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEP 686 (873)
Q Consensus 607 ~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~ 686 (873)
.++.+|.. +..|+ |+.|-++++. ....+.+++.+..|..|+.+.+ .+..+........ +|+.|.++.|++..
T Consensus 132 qlS~lp~~-lC~lp-Lkvli~sNNk--l~~lp~~ig~~~tl~~ld~s~n---ei~slpsql~~l~-slr~l~vrRn~l~~ 203 (722)
T KOG0532|consen 132 QLSHLPDG-LCDLP-LKVLIVSNNK--LTSLPEEIGLLPTLAHLDVSKN---EIQSLPSQLGYLT-SLRDLNVRRNHLED 203 (722)
T ss_pred hhhcCChh-hhcCc-ceeEEEecCc--cccCCcccccchhHHHhhhhhh---hhhhchHHhhhHH-HHHHHHHhhhhhhh
Confidence 89999987 76765 8889888753 4567778888888888888543 3433333222222 67788888887765
Q ss_pred ccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcCc----ccccCCCcEEeeccC
Q 002863 687 FTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVTW----LILAPNLKHLEVQNC 762 (873)
Q Consensus 687 ~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~----l~~l~~L~~L~L~~~ 762 (873)
.++ .+..+ .|..||+++ |++..+ |-.+ ..+..|+.|-|.+|-+++.|. -+...=.++|+..-|
T Consensus 204 lp~-El~~L-pLi~lDfSc-Nkis~i-Pv~f---------r~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 204 LPE-ELCSL-PLIRLDFSC-NKISYL-PVDF---------RKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCH-HHhCC-ceeeeeccc-Cceeec-chhh---------hhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 544 34433 478888885 566543 3333 567888999999888888762 133344566777666
No 63
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.47 E-value=4.8e-06 Score=96.23 Aligned_cols=202 Identities=14% Similarity=0.051 Sum_probs=119.9
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCC---ceEEEEEeCCc---ccHHHHHHH-
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF---DFVIWVVVSRD---LQLEKIQEI- 216 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~---~~~~~~~~~- 216 (873)
+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 4589999999998888766666789999999999999999998765 222222 12345544321 122222111
Q ss_pred --------------HHHHhCCCC----------------ccccccCHHHHHHHHHHHhccCCeEEEEeccccc--ccccc
Q 002863 217 --------------IAKKIGLFN----------------ESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL--VDLDQ 264 (873)
Q Consensus 217 --------------i~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~ 264 (873)
.+...+... +..... ....+..+...++++++.++-|+.|.. ..|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 112222110 000111 223567788888889999987777653 45777
Q ss_pred ccccCCCCCCCCcEEEE--Eccchhh-hhcc-ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCC
Q 002863 265 VGLPIPSRTSVSNKVVF--TTREFEV-CGQM-EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGG 340 (873)
Q Consensus 265 ~~~~l~~~~~~gs~iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g 340 (873)
+...+... .....|++ ||++... ...+ .....+.+.+++.+|.+.++.+.+....... -+++...|.+.+..
T Consensus 312 ik~~~~~~-~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~~ 387 (615)
T TIGR02903 312 IKKLFEEG-APADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTIE 387 (615)
T ss_pred hhhhcccC-ccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCCc
Confidence 76666654 34434444 5665432 1111 2234678899999999999999876432111 13455566666555
Q ss_pred chhHHHHHHHH
Q 002863 341 LPLALITVGRA 351 (873)
Q Consensus 341 lPLai~~~~~~ 351 (873)
-+-|+..++.+
T Consensus 388 gRraln~L~~~ 398 (615)
T TIGR02903 388 GRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHH
Confidence 56666655544
No 64
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=7.8e-06 Score=91.87 Aligned_cols=190 Identities=12% Similarity=0.123 Sum_probs=108.8
Q ss_pred CcccchhHHHHHHHHHHhcCC-cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEH-VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
++++|.+..++.|..++..+. ...+.++|+.|+||||+|+.+++.. ......+. ..++.-...+.|...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L-nC~~~~~~-------~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL-NCETGVTS-------TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCcCCCC-------CCCccCHHHHHHhcCCC
Confidence 358999999999999998765 4577899999999999999998875 11110000 00000001111110000
Q ss_pred CCC---ccccccCHHHHHHHHHHH-----hccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccchh-hh-h
Q 002863 223 LFN---ESWKNKSMQEKAQQIFNI-----LSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTREFE-VC-G 290 (873)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~~-v~-~ 290 (873)
... +.......++. +.+... ..+++-++|+|+|+... ....+...+... ..+.++|++|.+.. +. .
T Consensus 87 pDviEIDAAs~~~VddI-Reli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP-P~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 87 IDLIEIDAASRTKVEDT-RELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP-PEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CceEEecccccCCHHHH-HHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC-CCCcEEEEEECChHhhhHH
Confidence 000 00001111111 112111 23566799999997642 344444444333 44567777776532 22 2
Q ss_pred ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHH
Q 002863 291 QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALI 346 (873)
Q Consensus 291 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 346 (873)
.......+++.+++.++..+.+.+.+........ .+....|++.++|.+-.+.
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2244578999999999999999888765432222 4557889999999774443
No 65
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.46 E-value=2e-06 Score=87.13 Aligned_cols=161 Identities=19% Similarity=0.228 Sum_probs=102.6
Q ss_pred HHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHH
Q 002863 156 VWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQE 235 (873)
Q Consensus 156 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 235 (873)
|...+.++.+.-+.+||++|+||||||+.+.... + .+- ..||..|....-..-.+.|.++...
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-k--~~S--yrfvelSAt~a~t~dvR~ife~aq~------------ 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-K--KHS--YRFVELSATNAKTNDVRDIFEQAQN------------ 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-C--CCc--eEEEEEeccccchHHHHHHHHHHHH------------
Confidence 3344556788889999999999999999999876 2 221 5678777665444444555544321
Q ss_pred HHHHHHHHhccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEE--Eccchhh---hhccccccceeeccCChhhh
Q 002863 236 KAQQIFNILSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVF--TTREFEV---CGQMEAHRSFKVECLRYDDA 308 (873)
Q Consensus 236 ~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~e~ 308 (873)
...+.++|.+|++|.|..- .+-+. .+|.. ..|.-++| ||.++.. +.......++.|++|+.++.
T Consensus 216 -----~~~l~krkTilFiDEiHRFNksQQD~---fLP~V-E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v 286 (554)
T KOG2028|consen 216 -----EKSLTKRKTILFIDEIHRFNKSQQDT---FLPHV-ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAV 286 (554)
T ss_pred -----HHhhhcceeEEEeHHhhhhhhhhhhc---cccee-ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHH
Confidence 1234578999999999642 22222 23444 55666665 7777654 33345677899999999999
Q ss_pred HHHHHHHhc---CCCC--CCCCC----h-HHHHHHHHHHhCCch
Q 002863 309 WKLFELKVG---ADTL--DSHPD----I-PELAETLAKDCGGLP 342 (873)
Q Consensus 309 ~~lf~~~~~---~~~~--~~~~~----~-~~~~~~i~~~c~glP 342 (873)
..++.+... .... ..-++ + ..+..-++..|.|-.
T Consensus 287 ~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 287 VTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 999988542 1111 01111 2 345666777788854
No 66
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.45 E-value=2.2e-06 Score=82.97 Aligned_cols=176 Identities=18% Similarity=0.168 Sum_probs=91.6
Q ss_pred CcccchhHHHHHHHHHHh-----cCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLM-----EEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIA 218 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 218 (873)
++|||.++-++++.-++. ++...-+.+||++|+||||||.-+++.. ...|. +++...-...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~-------- 89 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKA-------- 89 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SC--------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhH--------
Confidence 468999988887654443 2356778899999999999999999987 34442 2222110001
Q ss_pred HHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc---------ccccccc--cCCCCCC---------CCcE
Q 002863 219 KKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV---------DLDQVGL--PIPSRTS---------VSNK 278 (873)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~~--~l~~~~~---------~gs~ 278 (873)
.+++..+. .+ +++-+|.+|+++... ..++... ....+.. +=+-
T Consensus 90 ---------------~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 90 ---------------GDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp ---------------HHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ---------------HHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 11111111 11 244577778886421 0111111 0011000 0112
Q ss_pred EEEEccchhhhhccccc--cceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHh
Q 002863 279 VVFTTREFEVCGQMEAH--RSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAMA 353 (873)
Q Consensus 279 iivTtR~~~v~~~~~~~--~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~ 353 (873)
|=-|||..-+...+... -..+++..+.+|-.++..+.+....... .++.+.+|+++|.|-|--+.-+-+..+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 33578776554433322 2348999999999999998876544222 256799999999999976665554443
No 67
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.43 E-value=5.3e-06 Score=89.48 Aligned_cols=178 Identities=12% Similarity=0.136 Sum_probs=105.9
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEe--CCcccHHHHHHHHHHHh
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV--SRDLQLEKIQEIIAKKI 221 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l 221 (873)
++++|+++.++.+..++..+..+.+.++|++|+||||+|+.+++... ...+.. .++.+ +.......+...+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~-~~i~~~~~~~~~~~~~~~~i~~~~ 93 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWRE-NFLELNASDERGIDVIRNKIKEFA 93 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCcccc-ceEEeccccccchHHHHHHHHHHH
Confidence 35899999999999999877767789999999999999999998751 122221 12222 22222221111111111
Q ss_pred CCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccch-hhhhc-cccccc
Q 002863 222 GLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-EVCGQ-MEAHRS 297 (873)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~~-~~~~~~ 297 (873)
...+ .-...+-++|+|+++... ....+...+... ...+++|+++... .+... ......
T Consensus 94 ~~~~-----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~-~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 94 RTAP-----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-SQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred hcCC-----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcC-CCCCeEEEEeCCccccchhHHHHhhe
Confidence 1000 001235689999986532 233333333332 3446777766432 22111 123346
Q ss_pred eeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHH
Q 002863 298 FKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLAL 345 (873)
Q Consensus 298 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 345 (873)
+++.++++++....+.+.+.......+ ++....+++.++|.+--+
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 899999999999999888764432222 456888999999976543
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=98.43 E-value=2.9e-06 Score=90.86 Aligned_cols=178 Identities=13% Similarity=0.126 Sum_probs=105.8
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCc-eEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD-FVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
++++|.++.++.|..++..++.+-+.++|++|+||||+|+.+++... ...|. .++-+..++......+ +.+++.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~v-r~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDVV-RNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHHH-HHHHHHHH
Confidence 35789998888888888777767788999999999999999998751 22232 2222333333232222 22221111
Q ss_pred CCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccch-hhhhc-cccccce
Q 002863 223 LFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-EVCGQ-MEAHRSF 298 (873)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~~-~~~~~~~ 298 (873)
.... ..-.++.-++|+|+++... ....+...+... ...+++|+++... .+... ......+
T Consensus 90 ~~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~-~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 90 QKKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIY-SNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred hccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc-cCCceEEEEeCCccccchhHHHhhhcc
Confidence 0000 0002456699999997642 222222222222 3456777766543 22111 1234578
Q ss_pred eeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh
Q 002863 299 KVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPL 343 (873)
Q Consensus 299 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 343 (873)
+++++++++....+.+.+.......+ ++....|++.++|..-
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMR 195 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHH
Confidence 99999999999999988765442222 4567889999998653
No 69
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3.2e-06 Score=97.91 Aligned_cols=179 Identities=16% Similarity=0.176 Sum_probs=108.6
Q ss_pred CcccchhHHHHHHHHHHhcCCcE-EEEEEeCCCCcHHHHHHHHHhhhccCCCC-------------------CceEEEEE
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVG-IVGLYGMGGVGKTTLLTQINNRFFDTPNH-------------------FDFVIWVV 203 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 203 (873)
..++|.+..++.|.+++..+++. .+.++|+.|+||||+|+.+++.. ..... |.-++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L-nce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL-NCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc-cCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 45899999999999998877655 55899999999999999999876 21111 11112221
Q ss_pred eCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEE
Q 002863 204 VSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVF 281 (873)
Q Consensus 204 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv 281 (873)
.+....+..+ +.|.+.+. ..-..+++-++|||+++.. ...+.+...+..- ....++|+
T Consensus 95 Aas~~kVDdI-ReLie~v~------------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP-P~~vrFIL 154 (944)
T PRK14949 95 AASRTKVDDT-RELLDNVQ------------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP-PEHVKFLL 154 (944)
T ss_pred cccccCHHHH-HHHHHHHH------------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc-CCCeEEEE
Confidence 1111111111 11211110 0112467779999999764 3344444444332 34556665
Q ss_pred Eccc-hhhhh-ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHH
Q 002863 282 TTRE-FEVCG-QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALI 346 (873)
Q Consensus 282 TtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 346 (873)
+|.+ ..+.. .......|++.+++.++..+.+.+.+...... --.+....|++.++|.|--+.
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~---~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP---FEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 5544 44432 22345789999999999999998877543211 124567889999999875443
No 70
>PTZ00202 tuzin; Provisional
Probab=98.42 E-value=4e-06 Score=88.50 Aligned_cols=161 Identities=17% Similarity=0.106 Sum_probs=102.3
Q ss_pred CCCCcccchhHHHHHHHHHHhcC---CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHH
Q 002863 141 PLPPTVVGLQLTFDRVWRCLMEE---HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEII 217 (873)
Q Consensus 141 ~~~~~~vgr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 217 (873)
+..+.|+||+.+..++...|.+. ..+++.|+|++|+|||||++.+.... . + ..++.-.. +..++++.|
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~----~--~qL~vNpr--g~eElLr~L 329 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G----M--PAVFVDVR--GTEDTLRSV 329 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C----c--eEEEECCC--CHHHHHHHH
Confidence 34568999999999999988642 34699999999999999999998765 1 1 23333333 679999999
Q ss_pred HHHhCCCCccccccCHHHHHHHHHHHh-----c-cCCeEEEEeccccccccccc---cccCCCCCCCCcEEEEEccchhh
Q 002863 218 AKKIGLFNESWKNKSMQEKAQQIFNIL-----S-KKKFVLLLDDMWELVDLDQV---GLPIPSRTSVSNKVVFTTREFEV 288 (873)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~~~~~---~~~l~~~~~~gs~iivTtR~~~v 288 (873)
+.++|.+.. ....++.+.|.+.+ . |++.+||+-= .+...+..+ ...+... ..-|.|++----+.+
T Consensus 330 L~ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~d-rr~ch~v~evplesl 403 (550)
T PTZ00202 330 VKALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACD-RRLCHVVIEVPLESL 403 (550)
T ss_pred HHHcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHcc-chhheeeeeehHhhc
Confidence 999998432 22344444444433 3 6677777632 222222211 0112222 455677776555443
Q ss_pred hhcc---ccccceeeccCChhhhHHHHHHHh
Q 002863 289 CGQM---EAHRSFKVECLRYDDAWKLFELKV 316 (873)
Q Consensus 289 ~~~~---~~~~~~~l~~L~~~e~~~lf~~~~ 316 (873)
.... ..-..|-+++++.++|.++-.+..
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 2211 123468899999999998877654
No 71
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=6.7e-06 Score=89.48 Aligned_cols=189 Identities=15% Similarity=0.181 Sum_probs=106.5
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
++++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+++.. ....... ..+...-.....+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l-~c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL-NCQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh-cCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 4589999999999998877654 567899999999999999998875 2111000 000000000011110000
Q ss_pred CCCccc---cccCHHHHHHHHHHHh-----ccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccch-hhhhc
Q 002863 223 LFNESW---KNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-EVCGQ 291 (873)
Q Consensus 223 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~~ 291 (873)
...... .....+ ..+.+.+.+ .+++-++|+|+++... .++.+...+... ....++|++|.+. .+...
T Consensus 88 ~d~~~~~~~~~~~v~-~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~-~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 88 LDLIEIDAASRTKVE-EMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP-PQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CceEEecccccCCHH-HHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC-CCCeEEEEEcCChHhhhHH
Confidence 000000 001111 122222222 2455699999997653 344444444433 4456777766543 33221
Q ss_pred -cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHH
Q 002863 292 -MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLAL 345 (873)
Q Consensus 292 -~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 345 (873)
.+....+++.+++.++..+.+.+.+....... -++.+..|++.++|.|-.+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESIDT---DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 23356789999999999998888765433111 2456788999999987543
No 72
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.42 E-value=5.5e-07 Score=82.84 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=78.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccC--CCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDT--PNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIF 241 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 241 (873)
+.+++.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...|+++++..... ..+..+..+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 34689999999999999999999876210 00134577999888889999999999999976532 356777778888
Q ss_pred HHhccCCe-EEEEeccccc-c--ccccccccCCCCCCCCcEEEEEccc
Q 002863 242 NILSKKKF-VLLLDDMWEL-V--DLDQVGLPIPSRTSVSNKVVFTTRE 285 (873)
Q Consensus 242 ~~l~~k~~-LlVlDdv~~~-~--~~~~~~~~l~~~~~~gs~iivTtR~ 285 (873)
+.+...+. +||+||++.. . .++.+..... ..+.+||++.+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~---~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN---ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh---CCCCeEEEEECh
Confidence 88876655 9999999764 2 1223322222 456677776654
No 73
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=1.8e-07 Score=72.62 Aligned_cols=58 Identities=36% Similarity=0.490 Sum_probs=49.2
Q ss_pred ccCCEEecCCCCCCccch-hhhcCCCCcEeeccccccccccChhhhCCCcccceEecccc
Q 002863 572 VSLQYLDLSNSIPDRLPL-GLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 572 ~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
++|++|++++|.+..+|. .|..+++|++|++++| .++.++++.|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 478888888888888885 4788899999999888 888888888889999999988875
No 74
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.41 E-value=1.4e-06 Score=82.04 Aligned_cols=124 Identities=21% Similarity=0.105 Sum_probs=72.6
Q ss_pred cchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCc
Q 002863 147 VGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNE 226 (873)
Q Consensus 147 vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 226 (873)
+|++..++.+...+.....+.+.|+|++|+||||+|+.+++.. . ..-..++++.++...........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 4788889999888877667789999999999999999999987 2 222345666655433222211111000
Q ss_pred cccccCHHHHHHHHHHHhccCCeEEEEeccccc-----cccccccccCCCC--CCCCcEEEEEccchh
Q 002863 227 SWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL-----VDLDQVGLPIPSR--TSVSNKVVFTTREFE 287 (873)
Q Consensus 227 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~~~~~l~~~--~~~gs~iivTtR~~~ 287 (873)
............++.++|+||++.. ..+.......... ...+..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111223456789999999853 1122211111110 025678888887653
No 75
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5.6e-06 Score=92.95 Aligned_cols=199 Identities=15% Similarity=0.101 Sum_probs=114.3
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
++++|.+..++.|..++..+.. ..+.++|++|+||||+|+.+++.. .....+...+|.|.+... +......-+..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 3589999999999888887654 466999999999999999998876 222222223333322110 0000000000000
Q ss_pred CCCccccccCHHHHHHHHHHHh-----ccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEcc-chhhhhcc-c
Q 002863 223 LFNESWKNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTR-EFEVCGQM-E 293 (873)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR-~~~v~~~~-~ 293 (873)
.. .....+ .++.+.+.+ .+++-++|+|+++.. ..+..+...+... .....+|++|. ...+.... .
T Consensus 92 ~~----~~~~vd-~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep-~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 92 AA----SNNSVE-DVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP-PEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred cc----ccCCHH-HHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC-CCCEEEEEEcCChhhCChHHhc
Confidence 00 011111 122232222 356679999999754 2355554444443 34445555554 33432222 3
Q ss_pred cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh-HHHHHHHHHh
Q 002863 294 AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPL-ALITVGRAMA 353 (873)
Q Consensus 294 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~~l~ 353 (873)
....+++.++++++....+.+.+....... -++....|++.++|.+- |+..+-.++.
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDAESLLERLLA 223 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 356799999999999999998875443222 24567889999999875 4444444443
No 76
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.5e-07 Score=71.79 Aligned_cols=56 Identities=39% Similarity=0.540 Sum_probs=32.0
Q ss_pred CcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCCCC
Q 002863 526 PRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNSI 583 (873)
Q Consensus 526 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~~ 583 (873)
|+|++|++++|.++.++ ...|.++++|++|++++|.+ |..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~--~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIP--PDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEEC--TTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccC--HHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35666666666666666 55566666666666665533 3345555555555555543
No 77
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.40 E-value=1.6e-08 Score=104.13 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=89.9
Q ss_pred ceEEEEeeccccccccc----cCCCCcccEEEecCCc-cccCCCCchhhhcCCcceEEecCCC-CCC-----ccccCccc
Q 002863 505 DVTRMSLMDNKIKRLTV----SPTSPRLLTLFLNSNY-FKNDKVNYHFFKSMASLRVLKLSHS-DLP-----CEISNLVS 573 (873)
Q Consensus 505 ~l~~l~l~~~~~~~l~~----~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~l~~Lr~L~L~~n-~lp-----~~i~~L~~ 573 (873)
.++.+++.+..-..... ...+|+++.|.+.++. +++... ..+-..|++|++|+|..| .+. .-...+++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~-~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL-LSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH-HHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 56777777764433222 2678999999998887 333321 344578999999999997 332 23456899
Q ss_pred CCEEecCCC-CCCc--cchhhhcCCCCcEeeccccccccccChhhh----CCCcccceEeccccCCCchhhHHHhc-CCC
Q 002863 574 LQYLDLSNS-IPDR--LPLGLKYLVNLKCLNLEYTFRLSRISPQVI----SNLKMLRVLRMFECGSFLDSLVEELL-GLE 645 (873)
Q Consensus 574 L~~L~L~~~-~i~~--lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i----~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~ 645 (873)
|+||+++.+ .|.. +..-...+.+|+.+.+++|. ..+..++ +.+..+-.+++..|+.+++.....+. .+.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 999999976 3333 33335667778888888883 3343333 34455666666677555554433332 344
Q ss_pred CCceeEEE
Q 002863 646 HLNVLTIT 653 (873)
Q Consensus 646 ~L~~L~l~ 653 (873)
.|+.|+.+
T Consensus 295 ~lq~l~~s 302 (483)
T KOG4341|consen 295 ALQVLCYS 302 (483)
T ss_pred Hhhhhccc
Confidence 55555543
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=6.6e-06 Score=91.57 Aligned_cols=186 Identities=18% Similarity=0.193 Sum_probs=108.9
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCC-------------------CceEEEEE
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNH-------------------FDFVIWVV 203 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 203 (873)
++++|.+...+.+...+..+.. +.+.++|++|+||||+|+.+++.. ..... +..+..+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l-~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL-NCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-ccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 4589999888888888877765 568899999999999999998865 11100 00112222
Q ss_pred eCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEE
Q 002863 204 VSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVF 281 (873)
Q Consensus 204 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv 281 (873)
.+.......+ +.|.+.... .-..+++-++|+|+++.. ...+.+...+... .....+|+
T Consensus 93 aa~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p-~~~vv~Il 152 (472)
T PRK14962 93 AASNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP-PSHVVFVL 152 (472)
T ss_pred CcccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC-CCcEEEEE
Confidence 2211122211 112211110 012346679999999653 2233444444332 33344444
Q ss_pred Eccc-hhhhhc-cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCC-chhHHHHHHHHHh
Q 002863 282 TTRE-FEVCGQ-MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGG-LPLALITVGRAMA 353 (873)
Q Consensus 282 TtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~~l~ 353 (873)
+|.+ ..+... ......+++.+++.++....+.+.+.......+ ++....|++.++| ++.|+..+-.+..
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVWK 224 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4433 333222 234567899999999999999888754332222 4567888988865 5777777766443
No 79
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=4.7e-06 Score=93.35 Aligned_cols=193 Identities=15% Similarity=0.142 Sum_probs=108.6
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCC--CceEEEEEeCCcccHHHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FDFVIWVVVSRDLQLEKIQEIIAKK 220 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~i~~~ 220 (873)
+++||-+..++.|.+++..+++ ..+.++|+.|+||||+|+.+.+... .... -.... +..+..-...+.|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn-C~~p~~~~g~~----~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN-CTGADGEGGIT----AQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCccccccCC----CCCCcccHHHHHHHcC
Confidence 3589999999999999987764 4668999999999999999988651 1000 00000 0000000011111100
Q ss_pred h-----CCCCccccccCHHHHHHHHHHH-----hccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEE-Eccchh
Q 002863 221 I-----GLFNESWKNKSMQEKAQQIFNI-----LSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVF-TTREFE 287 (873)
Q Consensus 221 l-----~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~ 287 (873)
- .+... .....++..+ +.+. ..++.-++|+|+++.. ..++.+...+..- ..+.++|+ ||....
T Consensus 91 ~hpDviEIdAa--s~~gVDdIRe-Lie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP-P~~v~FILaTtep~k 166 (700)
T PRK12323 91 RFVDYIEMDAA--SNRGVDEMAQ-LLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP-PEHVKFILATTDPQK 166 (700)
T ss_pred CCCcceEeccc--ccCCHHHHHH-HHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC-CCCceEEEEeCChHh
Confidence 0 00000 0111222211 1111 1356679999999764 2344444444332 34456555 444444
Q ss_pred hhh-ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002863 288 VCG-QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITV 348 (873)
Q Consensus 288 v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 348 (873)
+.. .......+.+..++.++..+.+.+.+....... ..+..+.|++.++|.|..+..+
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 432 223467899999999999999988775443211 1345688999999988654433
No 80
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.37 E-value=4e-06 Score=85.15 Aligned_cols=171 Identities=12% Similarity=0.141 Sum_probs=98.5
Q ss_pred CcccchhH-HHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQL-TFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
+.++|... .+..+.++........+.|+|+.|+|||+|++.+++.. .. .-..+.++.+.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~-~~--~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL-SQ--RGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-Hh--CCCeEEEEEHHHHhh-------------
Confidence 34456332 34444444434455688999999999999999999876 21 123455665532100
Q ss_pred CCCccccccCHHHHHHHHHHHhccCCeEEEEeccccc---ccccccc-ccCCCCCCCC-cEEEEEccch---------hh
Q 002863 223 LFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL---VDLDQVG-LPIPSRTSVS-NKVVFTTREF---------EV 288 (873)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~~-~~l~~~~~~g-s~iivTtR~~---------~v 288 (873)
...+ +.+.+.. --+|++||+... ..|+... ..+......| .++|+||+.. ++
T Consensus 87 ---------~~~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 87 ---------FVPE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred ---------hhHH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 0011 1111111 248899999653 2343221 1111110123 4799999854 22
Q ss_pred hhccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHH
Q 002863 289 CGQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALIT 347 (873)
Q Consensus 289 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 347 (873)
...+....+++++++++++-.+++.+++.......+ +++..-|++.+.|..-++..
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHH
Confidence 334455678999999999999999886654322222 56688888888876544443
No 81
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.32 E-value=3.5e-06 Score=98.24 Aligned_cols=168 Identities=21% Similarity=0.260 Sum_probs=96.7
Q ss_pred CcccchhHHHH---HHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHH
Q 002863 144 PTVVGLQLTFD---RVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKK 220 (873)
Q Consensus 144 ~~~vgr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 220 (873)
++++|.+..+. .+.+.+..+....+.++|++|+||||+|+.+++.. ...|. .+..+. ....++
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~di------- 93 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVKDL------- 93 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhHHH-------
Confidence 35789888774 45666666777778899999999999999999876 33331 111110 011111
Q ss_pred hCCCCccccccCHHHHHHHHHHHh--ccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEE--ccchh--hhh-c
Q 002863 221 IGLFNESWKNKSMQEKAQQIFNIL--SKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFT--TREFE--VCG-Q 291 (873)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivT--tR~~~--v~~-~ 291 (873)
.+......+.+ .+++.+|||||++.. ...+.+...+ ..|+.++|+ |.+.. +.. .
T Consensus 94 -------------r~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l----E~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 94 -------------RAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV----ENGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred -------------HHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh----cCceEEEEEecCCChHhhhhhHh
Confidence 11111111112 246789999999753 2333333322 234455553 44431 211 1
Q ss_pred cccccceeeccCChhhhHHHHHHHhcCCC----CCCCCChHHHHHHHHHHhCCch
Q 002863 292 MEAHRSFKVECLRYDDAWKLFELKVGADT----LDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 292 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~----~~~~~~~~~~~~~i~~~c~glP 342 (873)
......+.+++++.++...++.+.+.... .....--++....|++.+.|..
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 12346799999999999999998764210 0001112456788888998854
No 82
>PRK09087 hypothetical protein; Validated
Probab=98.32 E-value=6.1e-06 Score=82.90 Aligned_cols=142 Identities=17% Similarity=0.081 Sum_probs=87.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI 243 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (873)
..+.+.|+|+.|+|||+|++.+++.. .. .+++.. .+...+...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~~-------~~i~~~------~~~~~~~~~----------------------- 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-DA-------LLIHPN------EIGSDAANA----------------------- 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-CC-------EEecHH------HcchHHHHh-----------------------
Confidence 34678999999999999999988764 11 133221 111111111
Q ss_pred hccCCeEEEEecccccc-ccccccccCCCCCCCCcEEEEEccc---------hhhhhccccccceeeccCChhhhHHHHH
Q 002863 244 LSKKKFVLLLDDMWELV-DLDQVGLPIPSRTSVSNKVVFTTRE---------FEVCGQMEAHRSFKVECLRYDDAWKLFE 313 (873)
Q Consensus 244 l~~k~~LlVlDdv~~~~-~~~~~~~~l~~~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf~ 313 (873)
+.+ -+|++||+.... +-+.+...+......|..||+|++. +++...+.....+++++++.++-.++++
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 111 278889996431 1111222221111346679998874 2333444566789999999999999999
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHH
Q 002863 314 LKVGADTLDSHPDIPELAETLAKDCGGLPLALIT 347 (873)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 347 (873)
+++.......+ +++..-|++.+.|..-++..
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHH
Confidence 98865432222 56788889988887666554
No 83
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3e-08 Score=97.49 Aligned_cols=54 Identities=24% Similarity=0.237 Sum_probs=29.7
Q ss_pred CcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCCCccc----cCcccCCEEecC
Q 002863 526 PRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDLPCEI----SNLVSLQYLDLS 580 (873)
Q Consensus 526 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~lp~~i----~~L~~L~~L~L~ 580 (873)
+.|+.|||+...++.-.. ...++.|.+|+.|.|.|+.+.+.| .+-.+|+.|+|+
T Consensus 185 sRlq~lDLS~s~it~stl-~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls 242 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTL-HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS 242 (419)
T ss_pred hhhHHhhcchhheeHHHH-HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccc
Confidence 346777777666543221 345666777777777777554333 233344444444
No 84
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.30 E-value=1.3e-06 Score=92.01 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=64.8
Q ss_pred HHHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc--cHHHHHHHHHHHhCCCCccccccC
Q 002863 156 VWRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL--QLEKIQEIIAKKIGLFNESWKNKS 232 (873)
Q Consensus 156 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~ 232 (873)
+++.+.. +.-....|+|++|+||||||++||+.. .. .+|+.++||.+.+.. .+.++++.|...+-. ..++...
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~--st~d~~~ 234 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVA--STFDEPA 234 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEE--ECCCCCH
Confidence 4444432 345678899999999999999999997 33 499999999999887 777888888632111 1111111
Q ss_pred HHHH------HHHHHHH-hccCCeEEEEecccc
Q 002863 233 MQEK------AQQIFNI-LSKKKFVLLLDDMWE 258 (873)
Q Consensus 233 ~~~~------~~~l~~~-l~~k~~LlVlDdv~~ 258 (873)
.... ...-... -.|++++|++|++..
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 1111 1111111 268999999999953
No 85
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.30 E-value=8.6e-08 Score=106.75 Aligned_cols=119 Identities=29% Similarity=0.384 Sum_probs=59.4
Q ss_pred ceEEEEeecccccc-ccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC--CccccCcccCCEEecCC
Q 002863 505 DVTRMSLMDNKIKR-LTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL--PCEISNLVSLQYLDLSN 581 (873)
Q Consensus 505 ~l~~l~l~~~~~~~-l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l--p~~i~~L~~L~~L~L~~ 581 (873)
.+..+++..|.+.. ......+.+|..|++.+|.+..+. ..+..+++|++|+|++|.| -..+..++.|+.|++++
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~---~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIE---NLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcc---cchhhhhcchheeccccccccccchhhccchhhheecc
Confidence 34444455555544 222345555566666666555554 1134555555555555544 22344455555555555
Q ss_pred CCCCccchhhhcCCCCcEeeccccccccccCh-hhhCCCcccceEeccc
Q 002863 582 SIPDRLPLGLKYLVNLKCLNLEYTFRLSRISP-QVISNLKMLRVLRMFE 629 (873)
Q Consensus 582 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~-~~i~~l~~L~~L~l~~ 629 (873)
|.+..++ .+..+++|+.+++++| .+..+.. . ...+.+|+.+.+.+
T Consensus 150 N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 150 NLISDIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGG 195 (414)
T ss_pred Ccchhcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccC
Confidence 5555553 2334555555555555 4444443 1 24455555555544
No 86
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1e-05 Score=88.42 Aligned_cols=187 Identities=14% Similarity=0.098 Sum_probs=107.7
Q ss_pred CcccchhHHHHHHHHHHhcCCcE-EEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVG-IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
++++|.+..+..|..++..+... .+.++|+.|+||||+|+.+++.. . ...... ...+...... ..+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L-n-ce~~~~--~~pCg~C~sC----~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL-N-CENPIG--NEPCNECTSC----LEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc-C-cccccC--ccccCCCcHH----HHHHccCC
Confidence 45899999999999998877754 68899999999999999998875 2 111100 0011111111 11111111
Q ss_pred CCCccc---cccCHHHHHHHHHHH-----hccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEc-cchhhhh-
Q 002863 223 LFNESW---KNKSMQEKAQQIFNI-----LSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTT-REFEVCG- 290 (873)
Q Consensus 223 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTt-R~~~v~~- 290 (873)
...-.. .....+ .++.+.+. ..++.-++|+|+++.. ..++.+...+... .....+|++| ....+..
T Consensus 90 ~dviEIdaas~~gVd-~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP-p~~viFILaTte~~kI~~T 167 (484)
T PRK14956 90 SDVLEIDAASNRGIE-NIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP-PAHIVFILATTEFHKIPET 167 (484)
T ss_pred ccceeechhhcccHH-HHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC-CCceEEEeecCChhhccHH
Confidence 000000 011111 12222222 2356679999999764 3355554444332 3344555444 4344432
Q ss_pred ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh
Q 002863 291 QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPL 343 (873)
Q Consensus 291 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 343 (873)
.......|.+.+++.++..+.+.+.+....... -++....|++.++|.+-
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCChHH
Confidence 223456799999999999999988775443211 24567889999999874
No 87
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.3e-05 Score=90.09 Aligned_cols=185 Identities=18% Similarity=0.168 Sum_probs=110.2
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCC------------------CCCceEEEEEe
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTP------------------NHFDFVIWVVV 204 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~ 204 (873)
++++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.+++...... ..|.-.+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 3579999999999999987654 4578999999999999999987541000 01222222322
Q ss_pred CCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH-HhccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEE
Q 002863 205 SRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN-ILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVF 281 (873)
Q Consensus 205 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iiv 281 (873)
.....+.++ +.|+ +.+.. -..+++-++|+|+++... .++.+...+... ...+.+|+
T Consensus 96 as~~gvd~i-r~ii-------------------~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep-p~~v~fIL 154 (546)
T PRK14957 96 ASRTGVEET-KEIL-------------------DNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP-PEYVKFIL 154 (546)
T ss_pred ccccCHHHH-HHHH-------------------HHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC-CCCceEEE
Confidence 211121111 1111 11111 124567799999997542 344454444443 34555554
Q ss_pred -Eccchhhh-hccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch-hHHHHHHHHH
Q 002863 282 -TTREFEVC-GQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP-LALITVGRAM 352 (873)
Q Consensus 282 -TtR~~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l 352 (873)
||....+. ........+++.+++.++....+.+.+...... --++....|++.++|.+ -|+..+-.++
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~---~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN---SDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 54433343 223346789999999999988888766543311 12455678999999965 4555554443
No 88
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.29 E-value=1.5e-06 Score=85.38 Aligned_cols=44 Identities=30% Similarity=0.367 Sum_probs=32.4
Q ss_pred ccchhHHHHHHHHHHh---cCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 146 VVGLQLTFDRVWRCLM---EEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 146 ~vgr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
|+||+++++++.+.+. ....+.+.|+|.+|+|||+|+++++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999993 2457899999999999999999999887
No 89
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=1.9e-05 Score=88.24 Aligned_cols=193 Identities=15% Similarity=0.162 Sum_probs=108.2
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCce-EEEEEeCCcccHHHHHHHHHHHh
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDF-VIWVVVSRDLQLEKIQEIIAKKI 221 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l 221 (873)
.+++|-+..++.+...+..+.. +.+.++|+.|+||||+|+.+++.. ........ -.+..+... .....+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L-nc~~~~~~~~~~~~C~~C----~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV-NCSALITENTTIKTCEQC----TNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh-cCccccccCcCcCCCCCC----hHHHHHhcCC
Confidence 3579999999988887776653 578899999999999999998876 21111000 000000000 0001111000
Q ss_pred CCCC---ccccccCHHHHHHHHHH----HhccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEE-Eccchhhhhc
Q 002863 222 GLFN---ESWKNKSMQEKAQQIFN----ILSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVF-TTREFEVCGQ 291 (873)
Q Consensus 222 ~~~~---~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~~ 291 (873)
.... +.......++....+.. -..+++-++|+|+++.. ..+..+...+... ...+.+|+ ||+...+...
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-p~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-PPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-CCCEEEEEEeCChHHhhHH
Confidence 0000 00001112222111111 12456779999999864 3455555454443 44556554 5555555332
Q ss_pred c-ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHH
Q 002863 292 M-EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLAL 345 (873)
Q Consensus 292 ~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 345 (873)
. .....+++.+++.++....+.+.+.......+ .+....|++.++|.+--+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 2 34567899999999999999988865442221 345678999999976433
No 90
>PRK05642 DNA replication initiation factor; Validated
Probab=98.27 E-value=1e-05 Score=82.10 Aligned_cols=150 Identities=15% Similarity=0.256 Sum_probs=88.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhc
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS 245 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (873)
..+.|+|..|+|||.|++++++.. ..+ -..++|++..+ +... ...+.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~-~~~--~~~v~y~~~~~------~~~~--------------------~~~~~~~~~ 96 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF-EQR--GEPAVYLPLAE------LLDR--------------------GPELLDNLE 96 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhC--CCcEEEeeHHH------HHhh--------------------hHHHHHhhh
Confidence 578899999999999999998876 211 13456665432 1110 011222333
Q ss_pred cCCeEEEEeccccc---ccccc-ccccCCCCCCCCcEEEEEccchhh---------hhccccccceeeccCChhhhHHHH
Q 002863 246 KKKFVLLLDDMWEL---VDLDQ-VGLPIPSRTSVSNKVVFTTREFEV---------CGQMEAHRSFKVECLRYDDAWKLF 312 (873)
Q Consensus 246 ~k~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~gs~iivTtR~~~v---------~~~~~~~~~~~l~~L~~~e~~~lf 312 (873)
+-. +||+||+... ..|+. +...+......|..||+|++...- ...+.....+++++++.++-...+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 222 6889999632 34433 222222111346688998875321 122234467899999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002863 313 ELKVGADTLDSHPDIPELAETLAKDCGGLPLALITV 348 (873)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 348 (873)
++++.......+ +++..-|++.+.|..-.+..+
T Consensus 176 ~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 176 QLRASRRGLHLT---DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 966644321122 466788888887765444433
No 91
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.1e-05 Score=91.68 Aligned_cols=179 Identities=13% Similarity=0.168 Sum_probs=106.2
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCC-------------------CceEEEEE
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNH-------------------FDFVIWVV 203 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 203 (873)
++++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+.+.. ..... |.-++.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L-nC~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL-NCENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh-cccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 4589999999999999987664 478899999999999999988764 11110 10111222
Q ss_pred eCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccc--cccccccCCCCCCCCcEEEE
Q 002863 204 VSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD--LDQVGLPIPSRTSVSNKVVF 281 (873)
Q Consensus 204 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~~gs~iiv 281 (873)
.+....+.. .+++++.... .-..+++-++|+|++..... ...+...+... ...+++|+
T Consensus 95 aAs~~gVd~-IRelle~a~~------------------~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-p~~v~fIL 154 (709)
T PRK08691 95 AASNTGIDN-IREVLENAQY------------------APTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-PEHVKFIL 154 (709)
T ss_pred ccccCCHHH-HHHHHHHHHh------------------hhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-CCCcEEEE
Confidence 111111111 1111111100 00135667999999975432 33333333322 34556776
Q ss_pred Eccch-hhh-hccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHH
Q 002863 282 TTREF-EVC-GQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALI 346 (873)
Q Consensus 282 TtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 346 (873)
+|.+. .+. ...+....+.+.+++.++....+.+.+....... -.+....|++.++|.+.-+.
T Consensus 155 aTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 155 ATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHH
Confidence 66543 222 1123445788899999999999998876544222 24567899999999875443
No 92
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=1.6e-07 Score=104.54 Aligned_cols=100 Identities=33% Similarity=0.352 Sum_probs=66.3
Q ss_pred CCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC---CccccCcccCCEEecCCCCCCccchhhhcCCCCcEe
Q 002863 524 TSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL---PCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCL 600 (873)
Q Consensus 524 ~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l---p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 600 (873)
.+..+..+.+..|.+..+. ..+..+++|..|++.+|.| ...+..+++|++|++++|.|..+. .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~~---~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL---NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhhhh---cccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhh
Confidence 4556666667777665532 2356677777777777744 222666777777777777777774 36666777777
Q ss_pred eccccccccccChhhhCCCcccceEecccc
Q 002863 601 NLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 601 ~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
++++| .++.+.. +..+++|+.+++.++
T Consensus 146 ~l~~N-~i~~~~~--~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 146 NLSGN-LISDISG--LESLKSLKLLDLSYN 172 (414)
T ss_pred eeccC-cchhccC--CccchhhhcccCCcc
Confidence 77777 6666654 566777777777664
No 93
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.24 E-value=1.2e-05 Score=80.50 Aligned_cols=180 Identities=17% Similarity=0.156 Sum_probs=97.5
Q ss_pred Ccccchh-HHHHHHHHHHhc-C--CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHH
Q 002863 144 PTVVGLQ-LTFDRVWRCLME-E--HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 144 ~~~vgr~-~~~~~l~~~L~~-~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 219 (873)
+.++|.. +..-.....+.+ . ....+.|+|..|+|||.|.+++++...+..... .++++ +..+....+..
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~-~v~y~------~~~~f~~~~~~ 81 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGK-RVVYL------SAEEFIREFAD 81 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS--EEEE------EHHHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccc-cceee------cHHHHHHHHHH
Confidence 3456653 223333333433 2 334688999999999999999999862211222 35555 44555555555
Q ss_pred HhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc---cccc-ccccCCCCCCCCcEEEEEccchh--------
Q 002863 220 KIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV---DLDQ-VGLPIPSRTSVSNKVVFTTREFE-------- 287 (873)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~-~~~~l~~~~~~gs~iivTtR~~~-------- 287 (873)
.+.. .. ...+++.++ .-=+|++||++... .|++ +...+......|.+||+|++...
T Consensus 82 ~~~~-------~~----~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 82 ALRD-------GE----IEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHHT-------TS----HHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred HHHc-------cc----chhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 5431 11 122334444 34588899997542 2322 11111111134568999996532
Q ss_pred -hhhccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHH
Q 002863 288 -VCGQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLAL 345 (873)
Q Consensus 288 -v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 345 (873)
+...+...-.+++++++.++-..++.+.+.......+ ++++.-|++.+.+..-.+
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHH
Confidence 2233455667999999999999999998865442222 456677777766544333
No 94
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.24 E-value=3.3e-05 Score=84.62 Aligned_cols=181 Identities=13% Similarity=0.162 Sum_probs=108.3
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccC-C------------------CCCceEEEEE
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDT-P------------------NHFDFVIWVV 203 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~~f~~~~wv~ 203 (873)
++++|.+..++.+.+++..+.. ..+.++|++|+||||+|+.+....... . .+++. .++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 4579999999999999987654 467899999999999999988765110 0 12332 2332
Q ss_pred eCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEE
Q 002863 204 VSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVF 281 (873)
Q Consensus 204 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv 281 (873)
.+....... .+.+.+.+... -..+++-++|+|++... .....+...+... ...+.+|+
T Consensus 93 ~~~~~~~~~-~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~-~~~~~lIl 152 (355)
T TIGR02397 93 AASNNGVDD-IREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP-PEHVVFIL 152 (355)
T ss_pred ccccCCHHH-HHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCC-ccceeEEE
Confidence 221111111 12222222110 01245568999998653 2344444444332 34566666
Q ss_pred Eccchh-hhhc-cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002863 282 TTREFE-VCGQ-MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITV 348 (873)
Q Consensus 282 TtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 348 (873)
+|.+.. +... ......+++.++++++....+...+.......+ ++.+..+++.++|.|..+...
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHH
Confidence 665443 2221 223457888999999999999887754332121 466788999999988655444
No 95
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=3.1e-05 Score=83.39 Aligned_cols=194 Identities=10% Similarity=0.019 Sum_probs=109.3
Q ss_pred CcccchhHHHHHHHHHHhcCCcE-EEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEE---EEeCCcccHHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVG-IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIW---VVVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w---v~~s~~~~~~~~~~~i~~ 219 (873)
.+++|.+..++.+.+.+..+..+ .+.++|+.|+||+|+|..+.+... -......... .........-...+.|..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll-c~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~ 97 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLL-ATPPPGGDGAVPPPTSLAIDPDHPVARRIAA 97 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHh-CCCCCCCCccccccccccCCCCChHHHHHHc
Confidence 46899999999999999877644 688999999999999998877651 1110000000 000000000011111111
Q ss_pred HhCCCCc---------c-c----cccCHHHHHHHHHHHh-----ccCCeEEEEecccccc--ccccccccCCCCCCCCcE
Q 002863 220 KIGLFNE---------S-W----KNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNK 278 (873)
Q Consensus 220 ~l~~~~~---------~-~----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~ 278 (873)
+.+++ . . ..... +.++.+.+.+ .+.+-++|+||++... ....+...+..- ..++.
T Consensus 98 --~~HPDl~~i~~~~~~~~~~~~~~I~V-dqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep-p~~~~ 173 (365)
T PRK07471 98 --GAHGGLLTLERSWNEKGKRLRTVITV-DEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP-PARSL 173 (365)
T ss_pred --cCCCCeEEEecccccccccccccccH-HHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC-CCCeE
Confidence 11000 0 0 00112 2234444444 2567799999997542 233343333332 34556
Q ss_pred EEEEccchh-hhh-ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002863 279 VVFTTREFE-VCG-QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVG 349 (873)
Q Consensus 279 iivTtR~~~-v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 349 (873)
+|++|.+.+ +.. .......+.+.+++.++..+++.+...... .+....+++.++|.|..+..+.
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 677666553 322 123456899999999999999987642211 1223678999999998765543
No 96
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.23 E-value=3.2e-06 Score=92.31 Aligned_cols=171 Identities=19% Similarity=0.249 Sum_probs=99.4
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccH
Q 002863 144 PTVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 210 (873)
+++.|+++.++++.+.+.. ...+-+.++|++|+|||++|+++++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 4679999999999887642 124458899999999999999999976 2332 22221
Q ss_pred HHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEecccccc----------------ccccccccCCC-C
Q 002863 211 EKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELV----------------DLDQVGLPIPS-R 272 (873)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~-~ 272 (873)
..+... ..+ ........+.+.. ...+.+|++||++... .+..+...+.. .
T Consensus 190 ~~l~~~---~~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRK---YIG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHH---hhh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 111111 011 0111222233222 3467899999996431 01111111111 0
Q ss_pred CCCCcEEEEEccchhh-----hhccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch
Q 002863 273 TSVSNKVVFTTREFEV-----CGQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 273 ~~~gs~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
...+.+||.||...+. .+.......+.+...+.++..++|+.++.........+ ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 0245678888875432 22112245789999999999999998876544222222 466777787754
No 97
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.23 E-value=6.5e-06 Score=82.17 Aligned_cols=189 Identities=14% Similarity=0.185 Sum_probs=120.4
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEE-EEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIW-VVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w-v~~s~~~~~~~~~~~i~~~l~ 222 (873)
+.++|-+..+.-+...+.....++...+|++|.|||+-|..++... -..+.|.+++. .++|......-+-..+
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Ki----- 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKI----- 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhh-----
Confidence 4579999999999999888788999999999999999999888876 33456665443 4555543332111111
Q ss_pred CCCccccccCHHHHHHHHHHHh--ccCC-eEEEEeccccc--cccccccccCCCCCCCCcEEEEEccch-hhhhc-cccc
Q 002863 223 LFNESWKNKSMQEKAQQIFNIL--SKKK-FVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTREF-EVCGQ-MEAH 295 (873)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~~-~~~~ 295 (873)
.+...+........ .-++ -.+|||+++.. +.|..++..+.+. ...++.|+.+..- .+... ....
T Consensus 110 --------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~-s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 110 --------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF-SRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred --------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc-ccceEEEEEcCChhhCChHHHhhH
Confidence 11111110000000 1133 37889999864 5688887776664 5566655544432 22221 2335
Q ss_pred cceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCC-chhHHHHHHH
Q 002863 296 RSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGG-LPLALITVGR 350 (873)
Q Consensus 296 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~ 350 (873)
..+..++|.+++...-++..+..+....+ .+..+.|++.++| +--|+.++-+
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 67899999999999999999876654333 4567899999998 4455555433
No 98
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=4.8e-07 Score=89.14 Aligned_cols=83 Identities=19% Similarity=0.198 Sum_probs=59.5
Q ss_pred CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCCCccccCc----ccCCEEecCCCCC--CccchhhhcCCC
Q 002863 523 PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDLPCEISNL----VSLQYLDLSNSIP--DRLPLGLKYLVN 596 (873)
Q Consensus 523 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~lp~~i~~L----~~L~~L~L~~~~i--~~lp~~i~~l~~ 596 (873)
..+..++.|+|.+|.++...-....+.+||.|++|+|+.|.+.+.|+.+ .+|++|-|.++.+ ......+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 5567888888888888766533456788888999999888776666655 4777777777643 334455667777
Q ss_pred CcEeecccc
Q 002863 597 LKCLNLEYT 605 (873)
Q Consensus 597 L~~L~L~~~ 605 (873)
++.|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 777777766
No 99
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=3.1e-05 Score=88.35 Aligned_cols=192 Identities=16% Similarity=0.184 Sum_probs=107.4
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCC--CceEEEEEeCCcccHHHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FDFVIWVVVSRDLQLEKIQEIIAKK 220 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~i~~~ 220 (873)
+++||-+..++.|.+++..+.. ..+.++|+.|+||||+|+.+.+... -... ......-.+ +.-...+.|..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln-C~~~~~~~~~~~~pC----g~C~~C~~i~~- 89 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN-CQGPDGQGGITATPC----GVCQACRDIDS- 89 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCcccccCCCCCCC----CccHHHHHHHc-
Confidence 4589999999999999887765 5678999999999999999876641 1000 000000000 11111111110
Q ss_pred hCCCCcc-----ccccCHHHHHHHHHHHh-----ccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEccc-hh
Q 002863 221 IGLFNES-----WKNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTRE-FE 287 (873)
Q Consensus 221 l~~~~~~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~~ 287 (873)
|.+.+. ......++. +.+.+.. .++.-++|||+|+.. ..+..+...+..- ....++|++|.+ ..
T Consensus 90 -g~h~D~~eldaas~~~Vd~i-Reli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP-P~~~~fIL~Ttd~~k 166 (618)
T PRK14951 90 -GRFVDYTELDAASNRGVDEV-QQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP-PEYLKFVLATTDPQK 166 (618)
T ss_pred -CCCCceeecCcccccCHHHH-HHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC-CCCeEEEEEECCchh
Confidence 000000 001111111 1122221 244558999999864 2344444444433 345566655533 33
Q ss_pred hh-hccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHH
Q 002863 288 VC-GQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALIT 347 (873)
Q Consensus 288 v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 347 (873)
+. ........+++++++.++....+.+.+.......+ .+....|++.++|.+--+..
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 32 22334678999999999999999988765432222 45678899999997644433
No 100
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=2.4e-05 Score=88.02 Aligned_cols=194 Identities=12% Similarity=0.123 Sum_probs=107.1
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
+.++|++..++.+.+++..+.. +.+.++|+.|+||||+|+.+++.. .... |.... .++.-...+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L-~C~~------~~~~~-~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI-NCLN------PKDGD-CCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh-cCCC------CCCCC-CCcccHHHHHHHcCCC
Confidence 4589999999999999877654 478899999999999999998875 1111 11100 0011111111111100
Q ss_pred CCCccc---cccCHHHHHHHHHHHh-----ccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEc-cchhhhh-
Q 002863 223 LFNESW---KNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTT-REFEVCG- 290 (873)
Q Consensus 223 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTt-R~~~v~~- 290 (873)
...-.. .....++ ++.+.+.. .+++-++|+|+++.. ..+..+...+... .....+|++| ....+..
T Consensus 88 ~DiieIdaas~igVd~-IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP-p~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 88 VDIVELDAASNNGVDE-IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP-PKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CceEEeccccccCHHH-HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC-CCcEEEEEECCChHhhhHH
Confidence 000000 0011111 11121111 234457999999753 3344444444332 3345555544 4333322
Q ss_pred ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch-hHHHHHHH
Q 002863 291 QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP-LALITVGR 350 (873)
Q Consensus 291 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~ 350 (873)
.......+++.++++++....+.+.+.......+ .+.+..+++.++|.+ .|+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2234568999999999999999887754331122 455788999999965 45555544
No 101
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=7.2e-05 Score=84.73 Aligned_cols=197 Identities=14% Similarity=0.150 Sum_probs=111.5
Q ss_pred CcccchhHHHHHHHHHHhcCC-cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEH-VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
++++|-+..++.|..++..+. ...+.++|+.|+||||+|+.+++.. -.....+.. .++.-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L-~C~~~~~~~-------pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL-NCETAPTGE-------PCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc-cccCCCCCC-------CCcccHHHHHHhcCCC
Confidence 357999988888888887765 4678889999999999999998876 111100000 0000011111111100
Q ss_pred CCCccc---cccCHHHHHHHHHHH-----hccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEccc-hhhhhc
Q 002863 223 LFNESW---KNKSMQEKAQQIFNI-----LSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTRE-FEVCGQ 291 (873)
Q Consensus 223 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~~v~~~ 291 (873)
...... .....++ ++.+.+. ..+++-++|+|+++.. .....+...+... .....+|++|.. ..+...
T Consensus 88 pDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP-~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 88 VDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP-PARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc-CCCEEEEEecCChhhhhHH
Confidence 000000 0011111 1122222 2356679999999754 2344444444332 334556665544 444322
Q ss_pred -cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCc-hhHHHHHHHHHh
Q 002863 292 -MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGL-PLALITVGRAMA 353 (873)
Q Consensus 292 -~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~~~l~ 353 (873)
......+++.+++.++....+.+.+....... -.+.+..|++.++|. -.|+..+..++.
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 23356789999999999999988775443212 245678899999995 467777766553
No 102
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=3.5e-06 Score=98.27 Aligned_cols=97 Identities=26% Similarity=0.376 Sum_probs=52.3
Q ss_pred ceEEecCCC----CCCccccCcccCCEEecCCCCCC-ccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEecc
Q 002863 554 LRVLKLSHS----DLPCEISNLVSLQYLDLSNSIPD-RLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMF 628 (873)
Q Consensus 554 Lr~L~L~~n----~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~ 628 (873)
++.|+|++| .+|..++++++|++|+|++|.+. .+|..++.+++|+.|+|++| .+....|..++++++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECc
Confidence 555666665 33555666666666666655543 55556666666666666666 4443333336666666666666
Q ss_pred ccCCCchhhHHHhcCC-CCCceeEE
Q 002863 629 ECGSFLDSLVEELLGL-EHLNVLTI 652 (873)
Q Consensus 629 ~~~~~~~~~~~~l~~l-~~L~~L~l 652 (873)
+| .+.+..|..+..+ .++..+++
T Consensus 499 ~N-~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 499 GN-SLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CC-cccccCChHHhhccccCceEEe
Confidence 54 2344444444432 23334444
No 103
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.18 E-value=4e-05 Score=75.25 Aligned_cols=159 Identities=15% Similarity=0.181 Sum_probs=92.9
Q ss_pred HHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCC--------------------CCCceEEEEEe-CCcccHHH
Q 002863 155 RVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTP--------------------NHFDFVIWVVV-SRDLQLEK 212 (873)
Q Consensus 155 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~~~~wv~~-s~~~~~~~ 212 (873)
.+.+.+..++. ..+.++|+.|+||||+|+.+..... .. .+.|. .++.. ......+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~-~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL-CEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH
Confidence 45566666655 6789999999999999999887752 11 12222 12211 11111111
Q ss_pred HHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccch-hhh
Q 002863 213 IQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-EVC 289 (873)
Q Consensus 213 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~ 289 (873)
+ +.+.+.+... -..+.+-++|+||+.... ..+.+...+... ...+.+|++|++. .+.
T Consensus 81 i-~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~-~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 81 V-RELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLEEP-PPNTLFILITPSPEKLL 140 (188)
T ss_pred H-HHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCC-CCCeEEEEEECChHhCh
Confidence 1 1222222110 012456689999996542 344454444443 4455677666643 222
Q ss_pred hcc-ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhH
Q 002863 290 GQM-EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLA 344 (873)
Q Consensus 290 ~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 344 (873)
... .....+++.+++.++..+.+.+. + . . ++.+..|++.++|.|..
T Consensus 141 ~~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i---~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 141 PTIRSRCQVLPFPPLSEEALLQWLIRQ-G--I---S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHhhcEEeeCCCCCHHHHHHHHHHc-C--C---C---HHHHHHHHHHcCCCccc
Confidence 211 23467899999999998888876 1 1 1 45688999999998853
No 104
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.18 E-value=1.7e-05 Score=80.62 Aligned_cols=169 Identities=12% Similarity=0.073 Sum_probs=94.8
Q ss_pred cchhHHH-HHHHHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCC
Q 002863 147 VGLQLTF-DRVWRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLF 224 (873)
Q Consensus 147 vgr~~~~-~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 224 (873)
.|..... ..+.++... .....+.|+|..|+|||+||+.+++... .... ...+++..... ..+
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~------~~~------- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPL------LAF------- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhH------HHH-------
Confidence 3554433 333333331 3446788999999999999999998752 1222 23444433211 000
Q ss_pred CccccccCHHHHHHHHHHHhccCCeEEEEeccccccccc--cccccCCCCCCCCc-EEEEEccchhhhh--------ccc
Q 002863 225 NESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVDLD--QVGLPIPSRTSVSN-KVVFTTREFEVCG--------QME 293 (873)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--~~~~~l~~~~~~gs-~iivTtR~~~v~~--------~~~ 293 (873)
.. ....-+||+||+.....+. .+...+......+. .||+|++...... .+.
T Consensus 86 -----------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 -----------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred -----------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 01 1234478999996543221 22222221102233 4677776433211 222
Q ss_pred cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHH
Q 002863 294 AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAM 352 (873)
Q Consensus 294 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 352 (873)
....+++.++++++-..++.+.+....... -++....+++.+.|.+..+..+...+
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAAERGLQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 346789999999887777776543322112 24567888888999988877766655
No 105
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.7e-05 Score=87.78 Aligned_cols=179 Identities=14% Similarity=0.129 Sum_probs=107.4
Q ss_pred CcccchhHHHHHHHHHHhcCCcE-EEEEEeCCCCcHHHHHHHHHhhhccCCC-------------------CCceEEEEE
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVG-IVGLYGMGGVGKTTLLTQINNRFFDTPN-------------------HFDFVIWVV 203 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 203 (873)
+++||-+..++.|..++..+.++ .+.++|+.|+||||+|+.+++.. .... .|.-++.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL-NCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh-cCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 45899999999999999876654 57899999999999999988865 1111 111233333
Q ss_pred eCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEE
Q 002863 204 VSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVF 281 (873)
Q Consensus 204 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv 281 (873)
.+....+.++ +++++.+... -..++.-++|+|+|+.. .....+...+... ...+++|+
T Consensus 95 aas~~~v~~i-R~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep-p~~~~fIl 154 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP-PSHVKFIL 154 (509)
T ss_pred ccccCCHHHH-HHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-CCCeEEEE
Confidence 2222222222 1222222110 11356668999999764 2344444444332 34566666
Q ss_pred Eccc-hhhhh-ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHH
Q 002863 282 TTRE-FEVCG-QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALI 346 (873)
Q Consensus 282 TtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 346 (873)
+|.+ ..+.. ..+....+++.+++.++....+.+.+....... -.+....|++.++|.+--+.
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHH
Confidence 5543 33322 123456789999999998888777765443221 13456788999999775433
No 106
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.6e-05 Score=85.25 Aligned_cols=178 Identities=15% Similarity=0.174 Sum_probs=108.4
Q ss_pred CcccchhHHHHHHHHHHhcCCcE-EEEEEeCCCCcHHHHHHHHHhhhccC------------------CCCCceEEEEEe
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVG-IVGLYGMGGVGKTTLLTQINNRFFDT------------------PNHFDFVIWVVV 204 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~~f~~~~wv~~ 204 (873)
+++||.+..++.+.+++..+... .+.++|+.|+||||+|+.++....-. ...+.-++.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 45899999999988888777655 78899999999999999887643000 011112333333
Q ss_pred CCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEE
Q 002863 205 SRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFT 282 (873)
Q Consensus 205 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivT 282 (873)
+....+.++. .+++..... -..+++-++|+|+++... ..+.+...+..- ...+++|++
T Consensus 93 as~~~vddIR-~Iie~~~~~------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP-p~~v~fIla 152 (491)
T PRK14964 93 ASNTSVDDIK-VILENSCYL------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEP-APHVKFILA 152 (491)
T ss_pred ccCCCHHHHH-HHHHHHHhc------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCC-CCCeEEEEE
Confidence 3332332221 222221100 013456689999997542 344444444433 445666655
Q ss_pred cc-chhhhhc-cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhH
Q 002863 283 TR-EFEVCGQ-MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLA 344 (873)
Q Consensus 283 tR-~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 344 (873)
|. ...+... ......+++.+++.++....+.+.+.......+ ++....|++.++|.+-.
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRN 213 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 53 3444322 234567899999999999999988765442222 45577899999987653
No 107
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=1.9e-05 Score=90.19 Aligned_cols=191 Identities=14% Similarity=0.135 Sum_probs=107.3
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
+++||.+..++.|...+..+.+ ..+.++|+.|+||||+|+.+++... ....+. ...+..-...+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~-c~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN-CETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh-hccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 4589999999999999887665 4568999999999999999987751 110000 000000011111111000
Q ss_pred CCC---ccccccCHHHHHHHHHHH-----hccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEccc-hhhh-h
Q 002863 223 LFN---ESWKNKSMQEKAQQIFNI-----LSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTRE-FEVC-G 290 (873)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~~v~-~ 290 (873)
... +.......++ ++.+.+. ..+++-++|+|+++.. ...+.+...+..- ....++|++|.+ ..+. .
T Consensus 88 ~D~ieidaas~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-p~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 88 VDLIEIDAASRTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCceeecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC-CCCeEEEEecCCccccchH
Confidence 000 0000011111 1122222 2467779999999754 2344443333332 344565555544 4443 2
Q ss_pred ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHH
Q 002863 291 QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALIT 347 (873)
Q Consensus 291 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 347 (873)
.......|++.+++.++....+.+.+...... .-++....|++.++|.+--+..
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~---~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIP---FEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 22346789999999999999998876433211 1245567899999997764433
No 108
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=3.5e-05 Score=83.72 Aligned_cols=172 Identities=13% Similarity=0.105 Sum_probs=102.2
Q ss_pred CcccchhHHHHHHHHHHhcCC----------cEEEEEEeCCCCcHHHHHHHHHhhhccCC------------------CC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEH----------VGIVGLYGMGGVGKTTLLTQINNRFFDTP------------------NH 195 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~ 195 (873)
++++|-+..++.|.+++..+. ...+.++|+.|+||||+|+.++....-.. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 358999999999999987653 45688999999999999999877541000 01
Q ss_pred CceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-----ccCCeEEEEecccccc--cccccccc
Q 002863 196 FDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV--DLDQVGLP 268 (873)
Q Consensus 196 f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~ 268 (873)
.| +.++..... ....++ ++.+.+.+ .+++-++|+|+++... ....+...
T Consensus 85 pD-~~~i~~~~~----------------------~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 85 PD-VRVVAPEGL----------------------SIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CC-EEEeccccc----------------------cCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 11 111111100 011111 12222222 2455688889997542 22333333
Q ss_pred CCCCCCCCcEEEEEccc-hhhhhc-cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHH
Q 002863 269 IPSRTSVSNKVVFTTRE-FEVCGQ-MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALI 346 (873)
Q Consensus 269 l~~~~~~gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 346 (873)
+... ..+..+|++|.+ ..+... ......+.+.+++.++..+.+.+..+. + ++.+..+++.++|.|....
T Consensus 141 LEep-~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 141 VEEP-PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRAR 211 (394)
T ss_pred hhcC-CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHH
Confidence 3332 345556655555 344322 234578999999999999888754321 1 3457889999999997654
Q ss_pred HH
Q 002863 347 TV 348 (873)
Q Consensus 347 ~~ 348 (873)
.+
T Consensus 212 ~l 213 (394)
T PRK07940 212 RL 213 (394)
T ss_pred HH
Confidence 44
No 109
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=2.3e-05 Score=83.90 Aligned_cols=196 Identities=11% Similarity=0.088 Sum_probs=111.0
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCC-CCCceEEEEEeCCcccHHHHHHHHHHHh
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTP-NHFDFVIWVVVSRDLQLEKIQEIIAKKI 221 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l 221 (873)
+.++|.++..+.+...+..+.. ..+.|+|+.|+||||+|..+.+...... ..+... .......-....+.|...-
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 4589999999999999987754 4688999999999999999888762100 001111 0011111111223332221
Q ss_pred C-------CCCcc----c-cccCHHHHHHHHHHHh-----ccCCeEEEEecccccc--ccccccccCCCCCCCCcE-EEE
Q 002863 222 G-------LFNES----W-KNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNK-VVF 281 (873)
Q Consensus 222 ~-------~~~~~----~-~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~-iiv 281 (873)
. .+.+. . ..... +.++.+.+++ .+++-++|+|+++... ..+.+...+... ..+.. |++
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~v-d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp-p~~~~fiLi 177 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITV-DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP-PARALFILI 177 (351)
T ss_pred CCCEEEeecccccccccccccCCH-HHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC-CCCceEEEE
Confidence 0 00000 0 01112 2234455554 3567799999997542 233333333322 23344 445
Q ss_pred Eccchhhhhc-cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002863 282 TTREFEVCGQ-MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVG 349 (873)
Q Consensus 282 TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 349 (873)
|++...+... ......+++.+++.++..+++.+...... -.++....+++.++|.|..+..+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5444333221 23356899999999999999987432111 114457889999999998766543
No 110
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.15 E-value=7.8e-06 Score=86.69 Aligned_cols=94 Identities=18% Similarity=0.157 Sum_probs=63.2
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc--ccHHHHHHHHHHHhCCCCccccccCHHHHHH--
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD--LQLEKIQEIIAKKIGLFNESWKNKSMQEKAQ-- 238 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-- 238 (873)
+.-..++|+|++|+|||||++.+++.. . ..+|+..+||.+.++ .++.++++.+...+-...-..........+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 345689999999999999999999987 3 348999999999876 6889999998543322110000111111111
Q ss_pred --HHHHH-hccCCeEEEEecccc
Q 002863 239 --QIFNI-LSKKKFVLLLDDMWE 258 (873)
Q Consensus 239 --~l~~~-l~~k~~LlVlDdv~~ 258 (873)
..... -.|++.+|++|++..
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhH
Confidence 11111 268999999999954
No 111
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=2.8e-05 Score=85.70 Aligned_cols=200 Identities=12% Similarity=0.134 Sum_probs=110.2
Q ss_pred CcccchhHHHHHHHHHHhcCCcE-EEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEE-eCCcccHHHHHHHHHHHh
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVG-IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV-VSRDLQLEKIQEIIAKKI 221 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 221 (873)
+.++|.+..++.|..++..+.++ .+.++|+.|+||||+|+.+++.. .-....+...|.. .......-...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l-~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh-cCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 45899999999999998877654 58899999999999999988876 2111111111110 000000001111111110
Q ss_pred CCCCccc---cccCHHHHHHHHHHHh-----ccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEc-cchhhhh
Q 002863 222 GLFNESW---KNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTT-REFEVCG 290 (873)
Q Consensus 222 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTt-R~~~v~~ 290 (873)
....... .....++ +..+.+.+ .+++-++|+|++.... .++.+...+... ...+.+|++| +...+..
T Consensus 95 ~~n~~~~~~~~~~~id~-Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep-~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 95 SLNISEFDAASNNSVDD-IRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP-PPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCeEeecccccCCHHH-HHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC-CCCeEEEEEeCChHHhHH
Confidence 0000000 0011122 22233333 3456689999997543 455555555443 4455666555 4444432
Q ss_pred cc-ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh-HHHHHH
Q 002863 291 QM-EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPL-ALITVG 349 (873)
Q Consensus 291 ~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 349 (873)
.. .....+++.++++++....+...+.......+ ++.+..|++.++|.+- |+..+-
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 21 23457899999999999888887643321112 4568899999999764 444443
No 112
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=3e-07 Score=90.55 Aligned_cols=100 Identities=28% Similarity=0.275 Sum_probs=63.4
Q ss_pred cccEEEecCCccccCCCCchhhhcCCcceEEecCCCCCCc------cccCcccCCEEecCCCC----CCccchhhhcCCC
Q 002863 527 RLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDLPC------EISNLVSLQYLDLSNSI----PDRLPLGLKYLVN 596 (873)
Q Consensus 527 ~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~lp~------~i~~L~~L~~L~L~~~~----i~~lp~~i~~l~~ 596 (873)
-+..|.+.++.+.+......+-..+..++.|||.+|.|.+ -+.+|++|++|+|+.|. |+.+| ..+.+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccc
Confidence 3456666777665554323344678889999999996643 35678888999998764 44454 34567
Q ss_pred CcEeeccccccccc-cChhhhCCCcccceEecccc
Q 002863 597 LKCLNLEYTFRLSR-ISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 597 L~~L~L~~~~~l~~-l~~~~i~~l~~L~~L~l~~~ 630 (873)
|+.|-|.++ .+.- -....+..++.+++|+++.|
T Consensus 123 l~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 123 LRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred eEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccc
Confidence 888888776 3321 11223556677777776654
No 113
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=4.3e-05 Score=87.41 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=108.8
Q ss_pred CcccchhHHHHHHHHHHhcCCcE-EEEEEeCCCCcHHHHHHHHHhhhccCCCCCc--eEEEEEeCCcccHHHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVG-IVGLYGMGGVGKTTLLTQINNRFFDTPNHFD--FVIWVVVSRDLQLEKIQEIIAKK 220 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~ 220 (873)
.+++|.+..++.|..++..+... .+.++|+.|+||||+|+.+++.. ....... ...+-.+... .-.+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L-~c~~~~~~~~~~~~~cg~c----~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL-NYEGPDGDGGPTIDLCGVG----EHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh-CcCCccccCCCccccCccc----HHHHHHhcC
Confidence 45899999999999999877644 68899999999999999998865 1111000 0000001100 111112111
Q ss_pred hCCCCcc---ccccCHHHHHHHHHHHh-----ccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEc-cchhhh
Q 002863 221 IGLFNES---WKNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTT-REFEVC 289 (873)
Q Consensus 221 l~~~~~~---~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTt-R~~~v~ 289 (873)
.....-. ......++ ++.+.+.+ .+++-++|+|++.... ..+.+...+..- ..++++|++| ....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP-p~~~~fIl~tte~~kll 176 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP-PPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCceEEecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-CCCeEEEEEeCChhhhh
Confidence 1000000 00111222 12222222 2455689999996543 244444444332 4456666554 434433
Q ss_pred hc-cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHH
Q 002863 290 GQ-MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALIT 347 (873)
Q Consensus 290 ~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 347 (873)
.. ......+++..+++++....+.+.+........ .+....|++.++|.+.-+..
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 22 234567899999999999999988754432222 35678899999998765543
No 114
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=5.3e-05 Score=83.11 Aligned_cols=185 Identities=14% Similarity=0.200 Sum_probs=106.5
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhcc-----CCCCCceEE-EEEeCCcccHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFD-----TPNHFDFVI-WVVVSRDLQLEKIQEI 216 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-----~~~~f~~~~-wv~~s~~~~~~~~~~~ 216 (873)
++++|.+...+.+.+++..+.. +.+.++|++|+||||+|+.+.+.... ....|...+ -+......+...+ +.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HH
Confidence 3579999999999999987654 48889999999999999999776511 011122111 1111111111111 12
Q ss_pred HHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEc-cchhhhhc-c
Q 002863 217 IAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTT-REFEVCGQ-M 292 (873)
Q Consensus 217 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTt-R~~~v~~~-~ 292 (873)
+.+++... -..+++-++|+|++.... .+..+...+... ...+.+|++| +...+... .
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-PAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-CCceEEEEEeCCcccCCHHHH
Confidence 22221110 012455689999986532 244443333332 3344555554 33333221 2
Q ss_pred ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh-HHHHHHHH
Q 002863 293 EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPL-ALITVGRA 351 (873)
Q Consensus 293 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~~ 351 (873)
.....+++.++++++....+.+.+.......+ ++....+++.++|.+- ++..+-.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~~~~lekl 213 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDALSIFDRV 213 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33457899999999999999887754432222 4567888999998654 44444443
No 115
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.09 E-value=3.4e-06 Score=88.17 Aligned_cols=237 Identities=19% Similarity=0.250 Sum_probs=152.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCC-ceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF-DFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN 242 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (873)
..+.+.++|.|||||||++-.+.+ . ...| +.+.++.+..-.+...+.-.+...++.+. ..-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHH
Confidence 457899999999999999998888 3 2344 46667777776677777777777777643 222344556667
Q ss_pred HhccCCeEEEEeccccccc-cccccccCCCCCCCCcEEEEEccchhhhhccccccceeeccCChh-hhHHHHHHHhcCCC
Q 002863 243 ILSKKKFVLLLDDMWELVD-LDQVGLPIPSRTSVSNKVVFTTREFEVCGQMEAHRSFKVECLRYD-DAWKLFELKVGADT 320 (873)
Q Consensus 243 ~l~~k~~LlVlDdv~~~~~-~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~lf~~~~~~~~ 320 (873)
...++|.++|+||-....+ -....-.+..+ ...-.|+.|+|.... +.......+.+|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~-~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGA-CPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHcc-chhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhc
Confidence 7788999999999744321 11111112222 334478888887532 234556778888875 79999887764322
Q ss_pred --CCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHH----HHHHHHHHHchhcccCCchhHHHHHhhhccccCC
Q 002863 321 --LDSHPDIPELAETLAKDCGGLPLALITVGRAMASRKTPRE----WEHAIEVLRSSASKFAGMEKRVFSRLKFSFDFLP 394 (873)
Q Consensus 321 --~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~----w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~ 394 (873)
..-.......+.+|.++..|.|++|...++..+.- ...+ ..+-...+........--+......+..||.-|.
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh
Confidence 11223335678999999999999999999888763 2221 1121222222111111112356778899999998
Q ss_pred cchhHHHHhhhccCCCCcccc
Q 002863 395 SDATRFCLLYCTLFPEDYRIS 415 (873)
Q Consensus 395 ~~~~k~cfl~~~~fp~~~~i~ 415 (873)
. ..+--|--++.|...+.-.
T Consensus 239 g-we~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 239 G-WERALFGRLAVFVGGFDLG 258 (414)
T ss_pred h-HHHHHhcchhhhhhhhccc
Confidence 8 6777788888887766544
No 116
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=5.5e-05 Score=85.92 Aligned_cols=185 Identities=15% Similarity=0.151 Sum_probs=108.4
Q ss_pred CcccchhHHHHHHHHHHhcCCcE-EEEEEeCCCCcHHHHHHHHHhhhccCCC-------------------CCceEEEEE
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVG-IVGLYGMGGVGKTTLLTQINNRFFDTPN-------------------HFDFVIWVV 203 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 203 (873)
++++|.+..++.+..++..+... .+.++|+.|+||||+|+.+.+.. .... .|.-.+++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL-NCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 45899999999999999876654 56899999999999999998765 1110 111122222
Q ss_pred eCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEE
Q 002863 204 VSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVF 281 (873)
Q Consensus 204 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iiv 281 (873)
.+.......+ +.+++.+... -..+++-++|+|+++... ....+...+... ...+.+|+
T Consensus 95 ~~~~~~vd~i-r~l~~~~~~~------------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEep-p~~~~fIL 154 (527)
T PRK14969 95 AASNTQVDAM-RELLDNAQYA------------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP-PEHVKFIL 154 (527)
T ss_pred ccccCCHHHH-HHHHHHHhhC------------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCC-CCCEEEEE
Confidence 2211111111 1222211100 013566799999997543 233444444332 34556665
Q ss_pred Eccc-hhhhh-ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh-HHHHHHHHH
Q 002863 282 TTRE-FEVCG-QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPL-ALITVGRAM 352 (873)
Q Consensus 282 TtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~~l 352 (873)
+|.+ +.+.. .......+++.+++.++....+.+.+...... --++....|++.++|.+- |+..+-.++
T Consensus 155 ~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 155 ATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred EeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5543 33321 12335678999999999998888876543311 124556889999999764 444443333
No 117
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=4.8e-06 Score=58.97 Aligned_cols=41 Identities=46% Similarity=0.550 Sum_probs=33.5
Q ss_pred ccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccCh
Q 002863 572 VSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISP 613 (873)
Q Consensus 572 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~ 613 (873)
++|++|++++|.+..+|..+++|++|++|++++| .++.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4789999999999999988999999999999999 7777654
No 118
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.05 E-value=3.1e-05 Score=86.12 Aligned_cols=166 Identities=13% Similarity=0.118 Sum_probs=101.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhc
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS 245 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (873)
.-+.|+|..|+|||+|++++++........ ..++++ +..++...+...++.. ......+++.++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~-~~v~yv------~~~~f~~~~~~~l~~~---------~~~~~~~~~~~~ 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSD-LKVSYM------SGDEFARKAVDILQKT---------HKEIEQFKNEIC 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCC-CeEEEE------EHHHHHHHHHHHHHHh---------hhHHHHHHHHhc
Confidence 468899999999999999999865111111 233444 3445666666655421 012233444444
Q ss_pred cCCeEEEEecccccc---cc-ccccccCCCCCCCCcEEEEEccch---------hhhhccccccceeeccCChhhhHHHH
Q 002863 246 KKKFVLLLDDMWELV---DL-DQVGLPIPSRTSVSNKVVFTTREF---------EVCGQMEAHRSFKVECLRYDDAWKLF 312 (873)
Q Consensus 246 ~k~~LlVlDdv~~~~---~~-~~~~~~l~~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf 312 (873)
+.-+||+||+.... .+ +.+...+......|..||+|+... .+...+...-.+.+++++.++-.+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 34588899996532 12 223222222113345788887643 22333445567889999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002863 313 ELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVG 349 (873)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 349 (873)
.+++...... ..--+++..-|++.++|.|-.+.-+.
T Consensus 285 ~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 285 KKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 9988543211 11225678999999999987666554
No 119
>PLN03150 hypothetical protein; Provisional
Probab=98.04 E-value=8.3e-06 Score=95.22 Aligned_cols=76 Identities=25% Similarity=0.319 Sum_probs=37.2
Q ss_pred ccEEEecCCccccCCCCchhhhcCCcceEEecCCC----CCCccccCcccCCEEecCCCCCC-ccchhhhcCCCCcEeec
Q 002863 528 LLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS----DLPCEISNLVSLQYLDLSNSIPD-RLPLGLKYLVNLKCLNL 602 (873)
Q Consensus 528 L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n----~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L 602 (873)
++.|+|++|.+.... +..+..+++|+.|+|++| .+|..++.+++|++|+|++|.+. .+|..+++|++|++|+|
T Consensus 420 v~~L~L~~n~L~g~i--p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFI--PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccC--CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 444555555544333 233445555555555555 23444555555555555544433 34445555555555555
Q ss_pred ccc
Q 002863 603 EYT 605 (873)
Q Consensus 603 ~~~ 605 (873)
++|
T Consensus 498 s~N 500 (623)
T PLN03150 498 NGN 500 (623)
T ss_pred cCC
Confidence 555
No 120
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.00 E-value=4.4e-05 Score=82.49 Aligned_cols=108 Identities=17% Similarity=0.154 Sum_probs=71.8
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGL 223 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 223 (873)
+++++.++..+.+...|... +.|.++|++|+|||++|+.+++.. .....|+.+.||++++.++..++...+.-. +.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~v 250 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GV 250 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCC-CC
Confidence 35788889999999988643 467789999999999999999887 445678889999999988877665432100 00
Q ss_pred CCccccccCHHHHHHHHHHHh--ccCCeEEEEeccccc
Q 002863 224 FNESWKNKSMQEKAQQIFNIL--SKKKFVLLLDDMWEL 259 (873)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~ 259 (873)
. ..... .-..+.+.... .++++++|+|++...
T Consensus 251 g---y~~~~-G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 251 G---FRRKD-GIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred C---eEecC-chHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 00000 01111111221 247899999999653
No 121
>PF14516 AAA_35: AAA-like domain
Probab=98.00 E-value=0.0016 Score=69.86 Aligned_cols=202 Identities=15% Similarity=0.183 Sum_probs=119.1
Q ss_pred CCcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc-----ccHHH----H
Q 002863 143 PPTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-----LQLEK----I 213 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~----~ 213 (873)
.+..|.|...-+++.+.+.+. ...+.|.|+-.+|||+|...+.+.. +. ..+. .+++.+..- .+..+ +
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l-~~-~~~~-~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL-QQ-QGYR-CVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH-HH-CCCE-EEEEEeecCCCcccCCHHHHHHHH
Confidence 345689987778888887653 3588999999999999999998887 22 3443 456765541 23444 4
Q ss_pred HHHHHHHhCCCCc---ccc--ccCHHHHHHHHHHHh---ccCCeEEEEecccccccc----ccccccCCC----C----C
Q 002863 214 QEIIAKKIGLFNE---SWK--NKSMQEKAQQIFNIL---SKKKFVLLLDDMWELVDL----DQVGLPIPS----R----T 273 (873)
Q Consensus 214 ~~~i~~~l~~~~~---~~~--~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~----~~~~~~l~~----~----~ 273 (873)
...|.+++++... .|. .........-+.+.+ .+++.+|++|+|+..... .++...++. . .
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 4555556655421 111 112222223333332 268999999999753221 111111100 0 0
Q ss_pred CCCcEEEEEccch-hh-hhc----cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHH
Q 002863 274 SVSNKVVFTTREF-EV-CGQ----MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALIT 347 (873)
Q Consensus 274 ~~gs~iivTtR~~-~v-~~~----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 347 (873)
...-++++....+ .. ... +.....++|++++.+|...|..++-..-. ....++|...+||+|.-+..
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHHH
Confidence 1111222222111 11 111 12245789999999999999887642211 23389999999999999999
Q ss_pred HHHHHhcC
Q 002863 348 VGRAMASR 355 (873)
Q Consensus 348 ~~~~l~~~ 355 (873)
++..+...
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99999764
No 122
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00012 Score=83.23 Aligned_cols=197 Identities=11% Similarity=0.074 Sum_probs=109.6
Q ss_pred CcccchhHHHHHHHHHHhcCCcE-EEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVG-IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
++++|.+..++.|..++..+.+. .+.++|+.|+||||+|+.+++... -....+ +-.+... ...+.|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~---~~pCg~C----~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN-CAQGPT---ATPCGVC----ESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-cccCCC---CCccccc----HHHHHhhcccC
Confidence 45899999999999999877654 578999999999999999987651 111000 0000000 00111110000
Q ss_pred CCCc-----cccccCHHHHHHHHHHHh-----ccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEE-Eccchhhh
Q 002863 223 LFNE-----SWKNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVF-TTREFEVC 289 (873)
Q Consensus 223 ~~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~ 289 (873)
...+ .......++ ++.+.+.+ .+++-++|+|+++.. ...+.+...+..- .....+|+ ||....+.
T Consensus 85 ~~~dvieidaas~~gvd~-iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp-p~~~~fIL~tte~~kll 162 (584)
T PRK14952 85 GSIDVVELDAASHGGVDD-TRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP-PEHLIFIFATTEPEKVL 162 (584)
T ss_pred CCceEEEeccccccCHHH-HHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC-CCCeEEEEEeCChHhhH
Confidence 0000 000001111 11222211 345668999999753 2344444444433 34555554 44444443
Q ss_pred h-ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch-hHHHHHHHHHh
Q 002863 290 G-QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP-LALITVGRAMA 353 (873)
Q Consensus 290 ~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l~ 353 (873)
. .......+++.+++.++..+.+.+.+.......+ .+....|++.++|.+ -|+..+-.++.
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 2 2234678999999999999888887654432111 345678899999976 45555555444
No 123
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00013 Score=83.54 Aligned_cols=200 Identities=13% Similarity=0.141 Sum_probs=108.7
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEE-eCCcccHHHHHHHHHHHh
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV-VSRDLQLEKIQEIIAKKI 221 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 221 (873)
..++|.+..++.|.+++..+.+ ..+.++|+.|+||||+|+.+++.. ......+.-.|.. +...++.-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L-~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-CCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 4589999999999998887665 458899999999999999988776 2111111001110 000111111111111110
Q ss_pred CCCCccc---cccCHHHHHHHHHHHh-----ccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEc-cchhhhh
Q 002863 222 GLFNESW---KNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTT-REFEVCG 290 (873)
Q Consensus 222 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTt-R~~~v~~ 290 (873)
....... .....++.. .+.+.+ .+++-++|+|+++... ..+.+...+..- ...+.+|++| +...+..
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP-p~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP-PPHAIFIFATTELHKIPA 172 (620)
T ss_pred CCCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC-CCCeEEEEEeCChhhhhH
Confidence 0000000 001122222 222222 3456689999997542 244444444432 3345555444 4444432
Q ss_pred -ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch-hHHHHHH
Q 002863 291 -QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP-LALITVG 349 (873)
Q Consensus 291 -~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 349 (873)
.......+++.+++.++....+.+.+.......+ .+.+..|++.++|.. .|+..+-
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHH
Confidence 2234678999999999988888877653321122 456788999999954 4555444
No 124
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00011 Score=86.89 Aligned_cols=179 Identities=12% Similarity=0.157 Sum_probs=108.6
Q ss_pred CcccchhHHHHHHHHHHhcCCcE-EEEEEeCCCCcHHHHHHHHHhhhccCCC----------------------CCceEE
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVG-IVGLYGMGGVGKTTLLTQINNRFFDTPN----------------------HFDFVI 200 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------------------~f~~~~ 200 (873)
.++||.+..++.|..++..+.+. .+.++|+.|+||||+|+.+.+.. .-.. ++| ++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L-~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~ 92 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL-NCVEGPTSTPCGECDSCVALAPGGPGSLD-VT 92 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh-CcccCCCCCCCcccHHHHHHHcCCCCCCc-EE
Confidence 35899999999999999876654 57899999999999999998776 2111 111 11
Q ss_pred EEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHH-----hccCCeEEEEeccccc--cccccccccCCCCC
Q 002863 201 WVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI-----LSKKKFVLLLDDMWEL--VDLDQVGLPIPSRT 273 (873)
Q Consensus 201 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~ 273 (873)
++.......+ ++. +.+++. ..++.-++|||+++.. ...+.+...+..-
T Consensus 93 eidaas~~~V-----------------------d~i-R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp- 147 (824)
T PRK07764 93 EIDAASHGGV-----------------------DDA-RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP- 147 (824)
T ss_pred EecccccCCH-----------------------HHH-HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC-
Confidence 2211111111 111 112221 2355668999999764 3344444444443
Q ss_pred CCCcEEEEEc-cchhhhh-ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh-HHHHHHH
Q 002863 274 SVSNKVVFTT-REFEVCG-QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPL-ALITVGR 350 (873)
Q Consensus 274 ~~gs~iivTt-R~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~ 350 (873)
...+.+|++| ....+.. .......|++..++.++..+.+.+.+....... -.+....|++.++|.+. ++..+-.
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~Al~eLEK 224 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDSLSVLDQ 224 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3455666555 4344433 223467899999999999988888764433211 13456789999999774 4444444
Q ss_pred HH
Q 002863 351 AM 352 (873)
Q Consensus 351 ~l 352 (873)
++
T Consensus 225 Li 226 (824)
T PRK07764 225 LL 226 (824)
T ss_pred HH
Confidence 33
No 125
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.99 E-value=6.1e-05 Score=78.13 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=79.4
Q ss_pred cccchhHHHHHHHHH---Hh------c------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCccc
Q 002863 145 TVVGLQLTFDRVWRC---LM------E------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ 209 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~---L~------~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 209 (873)
.++|.+..++++.+. .. . +...-+.++|++|+||||+|+.+++..... ..-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH--
Confidence 478888776666433 21 0 134567899999999999999998765211 11111123333221
Q ss_pred HHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc----------ccccccccCCCCCCCCcEE
Q 002863 210 LEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV----------DLDQVGLPIPSRTSVSNKV 279 (873)
Q Consensus 210 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~~~l~~~~~~gs~i 279 (873)
++... .. ....... ..+.+.. ..-+|++|+++... ..+.+...+... .....+
T Consensus 84 --~l~~~---~~--------g~~~~~~-~~~~~~a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~-~~~~~v 146 (261)
T TIGR02881 84 --DLVGE---YI--------GHTAQKT-REVIKKA--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN-RNEFVL 146 (261)
T ss_pred --Hhhhh---hc--------cchHHHH-HHHHHhc--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc-CCCEEE
Confidence 11110 00 0111111 1122221 23589999997421 122232333332 233355
Q ss_pred EEEccchhhhh------cc-c-cccceeeccCChhhhHHHHHHHhcCC
Q 002863 280 VFTTREFEVCG------QM-E-AHRSFKVECLRYDDAWKLFELKVGAD 319 (873)
Q Consensus 280 ivTtR~~~v~~------~~-~-~~~~~~l~~L~~~e~~~lf~~~~~~~ 319 (873)
|+++...+... .. . ....+++++++.++-.+++.+.+...
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 55554332210 11 1 13458899999999999999887543
No 126
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00017 Score=80.88 Aligned_cols=181 Identities=14% Similarity=0.206 Sum_probs=106.8
Q ss_pred CcccchhHHHHHHHHHHhcCCcE-EEEEEeCCCCcHHHHHHHHHhhhccC--C-----------------CCCceEEEEE
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVG-IVGLYGMGGVGKTTLLTQINNRFFDT--P-----------------NHFDFVIWVV 203 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~--~-----------------~~f~~~~wv~ 203 (873)
+.++|-+..++.+..++..+... ++.++|+.|+||||+|+.+.+..... . .+++ ++.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~eld 92 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIEMD 92 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEEec
Confidence 45899999999999999877655 66899999999999999887764100 0 0111 11221
Q ss_pred eCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEE
Q 002863 204 VSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVF 281 (873)
Q Consensus 204 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iiv 281 (873)
.+....+..+.. +++..... -..+++-++|+|+++... ..+.+...+... ...+++|+
T Consensus 93 aas~~gId~IRe-lie~~~~~------------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp-p~~t~FIL 152 (535)
T PRK08451 93 AASNRGIDDIRE-LIEQTKYK------------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-PSYVKFIL 152 (535)
T ss_pred cccccCHHHHHH-HHHHHhhC------------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhc-CCceEEEE
Confidence 111111222111 11111000 012456689999997542 233444344332 44567676
Q ss_pred Eccch-hhhh-ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002863 282 TTREF-EVCG-QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITV 348 (873)
Q Consensus 282 TtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 348 (873)
+|.+. .+.. .......+++.+++.++....+.+.+....... -++.+..|++.++|.+--+..+
T Consensus 153 ~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 153 ATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 66553 2221 123456889999999999999888775443211 2456789999999988544433
No 127
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00016 Score=83.41 Aligned_cols=181 Identities=13% Similarity=0.194 Sum_probs=110.1
Q ss_pred CcccchhHHHHHHHHHHhcCCcE-EEEEEeCCCCcHHHHHHHHHhhhc--------------------cCCCCCceEEEE
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVG-IVGLYGMGGVGKTTLLTQINNRFF--------------------DTPNHFDFVIWV 202 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~--------------------~~~~~f~~~~wv 202 (873)
++++|.+..++.|..++..+... .+.++|+.|+||||+|+.+..... ....+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 45899999999999999877654 578999999999999998877541 01123432 222
Q ss_pred EeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccc--cccccccccCCCCCCCCcEEE
Q 002863 203 VVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVV 280 (873)
Q Consensus 203 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~ii 280 (873)
..+......++. .+++++.... ..+++-++|+|++... ..++.+...+..- ..++.+|
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~P------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEep-p~~tifI 155 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIPP------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP-PSYAIFI 155 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhCc------------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCC-CCCeEEE
Confidence 222222222222 1222221110 1245558899999764 2345555554443 3455655
Q ss_pred E-Eccchhhhhc-cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh-HHHHH
Q 002863 281 F-TTREFEVCGQ-MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPL-ALITV 348 (873)
Q Consensus 281 v-TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 348 (873)
+ ||+...+... ......+++.++++++....+.+.+........ .+.+..|++.++|..- |+..+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~al~~L 223 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDALSIF 223 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 5 5454444432 234667999999999999999887755432222 3457889999999654 44444
No 128
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00019 Score=83.12 Aligned_cols=193 Identities=15% Similarity=0.170 Sum_probs=109.1
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
++++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.. ....... ....++.-...+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l-~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV-NCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh-cCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 4689999999999988877654 467899999999999999998775 1111000 0001111122233322211
Q ss_pred CCCccc---cccCHHHHHHHHHHHh-----ccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEccc-hhhhhc
Q 002863 223 LFNESW---KNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTRE-FEVCGQ 291 (873)
Q Consensus 223 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~~v~~~ 291 (873)
...-.. .....++ ++.+.+.+ .+++-++|+|++... ...+.+...+... ...+.+|++|.+ ..+...
T Consensus 89 ~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep-p~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 89 VDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP-PPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC-CCCeEEEEEeCChhhhhHH
Confidence 100000 0111121 22222222 245668999999654 2344444444333 345566665543 333221
Q ss_pred -cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002863 292 -MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITV 348 (873)
Q Consensus 292 -~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 348 (873)
......+.+..++.++....+.+.+.......+ .+.+..|++.++|.+..+...
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 223467889999999999888887754432222 456789999999988644433
No 129
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.97 E-value=3.3e-05 Score=84.68 Aligned_cols=170 Identities=18% Similarity=0.255 Sum_probs=97.7
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccH
Q 002863 144 PTVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 210 (873)
+++.|+++.++++.+.+.. ...+-|.++|++|+|||++|+++++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 4678999999999887631 234568899999999999999999876 222 232221
Q ss_pred HHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEecccccc----------c--c-cccccc---CCC-C
Q 002863 211 EKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELV----------D--L-DQVGLP---IPS-R 272 (873)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~--~-~~~~~~---l~~-~ 272 (873)
.++.... .+ ........+.+.. ...+.+|+|||++... + . ..+... +.. .
T Consensus 199 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELVQKF---IG---------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHhHhh---cc---------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111110 11 1122223333333 3467899999996421 0 0 011111 111 0
Q ss_pred CCCCcEEEEEccchhhhh-cc----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCc
Q 002863 273 TSVSNKVVFTTREFEVCG-QM----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGL 341 (873)
Q Consensus 273 ~~~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 341 (873)
...+..||.||...+... .+ .....+.++..+.++-.++|+.++.........+ ...+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 023567887887643221 11 1245689999999999999998876544222233 35566777764
No 130
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.96 E-value=2.5e-07 Score=101.57 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=14.4
Q ss_pred ccccccceEEEEeeccccccc
Q 002863 499 SVGMWKDVTRMSLMDNKIKRL 519 (873)
Q Consensus 499 ~~~~~~~l~~l~l~~~~~~~l 519 (873)
++..++.+|+|-+.++.+...
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~ 124 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTA 124 (1096)
T ss_pred eeccccceeeEEecCcchhhh
Confidence 344567888888887766543
No 131
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00019 Score=79.98 Aligned_cols=183 Identities=14% Similarity=0.151 Sum_probs=106.9
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccC--------------------CCCCceEEEE
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDT--------------------PNHFDFVIWV 202 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~~f~~~~wv 202 (873)
++++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+.+..... ..+++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 4689999999999999987665 568899999999999999988765110 00122 1111
Q ss_pred EeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccc--cccccccccCCCCCCCCcEEE
Q 002863 203 VVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVV 280 (873)
Q Consensus 203 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~ii 280 (873)
.........++. .+.+.+.. ....+++-++|+|++... ...+.+...+... ..+..+|
T Consensus 96 ~g~~~~gid~ir-~i~~~l~~------------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep-~~~~~~I 155 (451)
T PRK06305 96 DGASHRGIEDIR-QINETVLF------------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP-PQHVKFF 155 (451)
T ss_pred eccccCCHHHHH-HHHHHHHh------------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC-CCCceEE
Confidence 111111111111 11111110 011356778999998643 2233344444333 3455666
Q ss_pred EEccc-hhhhhc-cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch-hHHHHHHH
Q 002863 281 FTTRE-FEVCGQ-MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP-LALITVGR 350 (873)
Q Consensus 281 vTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~ 350 (873)
++|.. ..+... ......+++.++++++....+.+.+....... -++.+..|++.++|.+ .|+..+-.
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i---~~~al~~L~~~s~gdlr~a~~~Lek 225 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET---SREALLPIARAAQGSLRDAESLYDY 225 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 66533 333221 23456789999999999988888765433112 2456788999999965 45555443
No 132
>CHL00181 cbbX CbbX; Provisional
Probab=97.95 E-value=0.00014 Score=75.94 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=82.3
Q ss_pred cccchhHHHHHHHHHH---h-----c-------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCccc
Q 002863 145 TVVGLQLTFDRVWRCL---M-----E-------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ 209 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L---~-----~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 209 (873)
.++|.+..+++|.++. . . .....+.++|++|+||||+|+.+++.... ...-....|+.++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~~-- 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTRD-- 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecHH--
Confidence 4678776666554432 1 0 12235788999999999999999886511 111111224555422
Q ss_pred HHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccc-----------cccccccccCCCCCCCCcE
Q 002863 210 LEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL-----------VDLDQVGLPIPSRTSVSNK 278 (873)
Q Consensus 210 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~gs~ 278 (873)
++.... .| .+... ...+.+.. ..-+|++|++... ...+.+...+.+. ..+.+
T Consensus 101 --~l~~~~---~g--------~~~~~-~~~~l~~a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~-~~~~~ 163 (287)
T CHL00181 101 --DLVGQY---IG--------HTAPK-TKEVLKKA--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ-RDDLV 163 (287)
T ss_pred --HHHHHH---hc--------cchHH-HHHHHHHc--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC-CCCEE
Confidence 222111 11 01111 11222222 2359999999642 1112222333333 44567
Q ss_pred EEEEccchhhhhcc--------ccccceeeccCChhhhHHHHHHHhcCC
Q 002863 279 VVFTTREFEVCGQM--------EAHRSFKVECLRYDDAWKLFELKVGAD 319 (873)
Q Consensus 279 iivTtR~~~v~~~~--------~~~~~~~l~~L~~~e~~~lf~~~~~~~ 319 (873)
||+++....+.... .....+.+++++.+|..+++...+...
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 77777543332111 124468999999999999998887543
No 133
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.94 E-value=0.00017 Score=80.14 Aligned_cols=157 Identities=20% Similarity=0.205 Sum_probs=91.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhc
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS 245 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (873)
..+.|+|+.|+|||+|++++++.. .....=..+++++ ..++...+...+.. ...+ .+.+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l-~~~~~~~~v~yi~------~~~~~~~~~~~~~~-------~~~~----~~~~~~~ 198 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEI-LENNPNAKVVYVS------SEKFTNDFVNALRN-------NKME----EFKEKYR 198 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH-HHhCCCCcEEEEE------HHHHHHHHHHHHHc-------CCHH----HHHHHHH
Confidence 468899999999999999999987 2221112345553 33344445444431 1122 2233333
Q ss_pred cCCeEEEEeccccccc---c-ccccccCCCCCCCCcEEEEEccch-h--------hhhccccccceeeccCChhhhHHHH
Q 002863 246 KKKFVLLLDDMWELVD---L-DQVGLPIPSRTSVSNKVVFTTREF-E--------VCGQMEAHRSFKVECLRYDDAWKLF 312 (873)
Q Consensus 246 ~k~~LlVlDdv~~~~~---~-~~~~~~l~~~~~~gs~iivTtR~~-~--------v~~~~~~~~~~~l~~L~~~e~~~lf 312 (873)
+ .-+|||||++.... + +.+...+......|..+|+|+... . +...+.....+.+++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 34889999975321 1 112221211102345688887642 1 2222333457899999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHhCCchhH
Q 002863 313 ELKVGADTLDSHPDIPELAETLAKDCGGLPLA 344 (873)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 344 (873)
.+.+.......+ +++...|++.+.|.+-.
T Consensus 278 ~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 278 QKKAEEEGLELP---DEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCHHH
Confidence 998865432222 56688888888886653
No 134
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=3.3e-05 Score=82.49 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=33.5
Q ss_pred hhcCCcceEEecCCCCCCccccCcc-cCCEEecCCC-CCCccchhhhcCCCCcEeeccccccccccCh
Q 002863 548 FKSMASLRVLKLSHSDLPCEISNLV-SLQYLDLSNS-IPDRLPLGLKYLVNLKCLNLEYTFRLSRISP 613 (873)
Q Consensus 548 ~~~l~~Lr~L~L~~n~lp~~i~~L~-~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~ 613 (873)
+..+++++.|++++|.|. ++..++ +|+.|.+++| .+..+|..+ ..+|++|++++|..+..+|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 344666777777766321 001222 4666666653 455555444 24666666666655555543
No 135
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00021 Score=82.35 Aligned_cols=189 Identities=12% Similarity=0.106 Sum_probs=106.1
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
.+++|.+..++.+..++..+++ +.+.++|+.|+||||+|+.++.... +.+.. ..+-.+... ... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln--C~~~~-~~~~pC~~C-------~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN--CSHKT-DLLEPCQEC-------IEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc--ccccC-CCCCchhHH-------HHh---hc
Confidence 3579999999999999987654 4668999999999999999987651 11100 000000000 000 00
Q ss_pred CCCccc-----cccCHHHHHHHHHHHh-----ccCCeEEEEeccccc--cccccccccCCCCCCCCcEEE-EEccchhhh
Q 002863 223 LFNESW-----KNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVV-FTTREFEVC 289 (873)
Q Consensus 223 ~~~~~~-----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~ii-vTtR~~~v~ 289 (873)
...+.. .....+ .++.+.+.+ .+++-++|+|++... ..+..+...+... .....+| +|++...+.
T Consensus 85 ~~~Dvieidaasn~~vd-~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-P~~tifILaTte~~KLl 162 (725)
T PRK07133 85 NSLDIIEMDAASNNGVD-EIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-PKHVIFILATTEVHKIP 162 (725)
T ss_pred CCCcEEEEeccccCCHH-HHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-CCceEEEEEcCChhhhh
Confidence 000000 001111 122233222 356669999999753 2344444433332 3344544 455444443
Q ss_pred h-ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch-hHHHHHHH
Q 002863 290 G-QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP-LALITVGR 350 (873)
Q Consensus 290 ~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~ 350 (873)
. .......+++.+++.++....+...+....... -.+.+..|++.++|.+ .|+..+-.
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i---d~eAl~~LA~lS~GslR~AlslLek 222 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISY---EKNALKLIAKLSSGSLRDALSIAEQ 222 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 233456899999999999988887664433111 1345788999999866 45444443
No 136
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.92 E-value=0.00048 Score=68.41 Aligned_cols=173 Identities=18% Similarity=0.210 Sum_probs=98.8
Q ss_pred CcccchhHHHHHHHHHHh-----cCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccH--HHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLM-----EEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL--EKIQEI 216 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~ 216 (873)
.+|+|.++.++++.=++. ++.+--|.++|++|.||||||.-+++.. .+ .+. +.+.+-+ ..-+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gv--n~k------~tsGp~leK~gDlaa 96 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GV--NLK------ITSGPALEKPGDLAA 96 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cC--CeE------ecccccccChhhHHH
Confidence 358999988888765554 2456689999999999999999999987 22 211 1111100 001111
Q ss_pred HHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc---------ccccccccCCCCCCCCcE---------
Q 002863 217 IAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV---------DLDQVGLPIPSRTSVSNK--------- 278 (873)
Q Consensus 217 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~gs~--------- 278 (873)
|+.. |+ ..=++.+|.++... ..+++..-..-+.+.++|
T Consensus 97 iLt~-----------------------Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 97 ILTN-----------------------LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred HHhc-----------------------CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 1111 11 22345566665321 111111100000012222
Q ss_pred --EEEEccchhhhhccc--cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHH
Q 002863 279 --VVFTTREFEVCGQME--AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAM 352 (873)
Q Consensus 279 --iivTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 352 (873)
|=-|||.-.+..-.. ..-..+++..+.+|-.++..+.+..-..... ++-+.+|+++..|-|--+.-+-+..
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHHHH
Confidence 235888655443322 2345789999999999999998865443333 4568999999999996555444433
No 137
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=8.5e-05 Score=82.67 Aligned_cols=157 Identities=19% Similarity=0.183 Sum_probs=93.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCc-eEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHH
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD-FVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI 243 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (873)
..-+.|+|++|+|||+||+++++.. . ..+.. .++|++. .++...+...+.. ...+ .+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l-~-~~~~~~~v~yi~~------~~f~~~~~~~~~~-------~~~~----~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYV-V-QNEPDLRVMYITS------EKFLNDLVDSMKE-------GKLN----EFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH-H-HhCCCCeEEEEEH------HHHHHHHHHHHhc-------ccHH----HHHHH
Confidence 3458999999999999999999986 2 22222 4566643 3455555555431 1112 23333
Q ss_pred hccCCeEEEEeccccccc---c-ccccccCCCCCCCCcEEEEEcc-chhh--------hhccccccceeeccCChhhhHH
Q 002863 244 LSKKKFVLLLDDMWELVD---L-DQVGLPIPSRTSVSNKVVFTTR-EFEV--------CGQMEAHRSFKVECLRYDDAWK 310 (873)
Q Consensus 244 l~~k~~LlVlDdv~~~~~---~-~~~~~~l~~~~~~gs~iivTtR-~~~v--------~~~~~~~~~~~l~~L~~~e~~~ 310 (873)
++.+.-+|++||+....+ + +.+...+......|..||+||. .+.- ...+.....+.+++.+.+.-.+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 344566899999974311 1 1222222111123457888885 3221 2223345578999999999999
Q ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh
Q 002863 311 LFELKVGADTLDSHPDIPELAETLAKDCGGLPL 343 (873)
Q Consensus 311 lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 343 (873)
++++.+.......+ +++...|++.+.|..-
T Consensus 271 IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 271 IARKMLEIEHGELP---EEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHHHHhcCCCCC---HHHHHHHHhccccCHH
Confidence 99988764332222 5678888888887543
No 138
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00022 Score=79.93 Aligned_cols=177 Identities=12% Similarity=0.117 Sum_probs=103.6
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhcc--CCC----------------CCceEEEEEe
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFD--TPN----------------HFDFVIWVVV 204 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~----------------~f~~~~wv~~ 204 (873)
.+++|.+..++.+..++..+.. +++.++|+.|+||||+|+.++....- ... .|....++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 3579999999999999987654 45678999999999999998876410 000 0111222221
Q ss_pred CCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-----ccCCeEEEEeccccc--cccccccccCCCCCCCCc
Q 002863 205 SRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSN 277 (873)
Q Consensus 205 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs 277 (873)
+..... + ..+.+.+.. .+++-++|+|+++.. ...+.+...+... ....
T Consensus 96 as~~gv-----------------------d-~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep-p~~~ 150 (486)
T PRK14953 96 ASNRGI-----------------------D-DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP-PPRT 150 (486)
T ss_pred ccCCCH-----------------------H-HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-CCCe
Confidence 111111 1 111222222 356679999999754 2233443333332 3344
Q ss_pred EEEE-Eccchhhhhc-cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002863 278 KVVF-TTREFEVCGQ-MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITV 348 (873)
Q Consensus 278 ~iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 348 (873)
.+|+ ||+...+... ......+.+.+++.++....+.+.+....... -.+....|++.++|.+-.+...
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 5554 4443333221 22345789999999999988888765433222 2355778899999976544433
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.89 E-value=0.00017 Score=86.54 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=99.0
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccC--C-CCCceEEE-EEeCCcccHHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDT--P-NHFDFVIW-VVVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~-~~f~~~~w-v~~s~~~~~~~~~~~i~~ 219 (873)
+.++||++++.++++.|......-+.++|++|+||||+|+.++...... . .-.+..+| +.++.- . .
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l------~----a 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL------Q----A 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh------h----c
Confidence 3579999999999999877665667799999999999999999876211 0 01122232 222210 0 0
Q ss_pred HhCCCCccccccCHHHHHHHHHHHh--ccCCeEEEEecccccc---------cccc-ccccCCCCCCCCcEEEEEccchh
Q 002863 220 KIGLFNESWKNKSMQEKAQQIFNIL--SKKKFVLLLDDMWELV---------DLDQ-VGLPIPSRTSVSNKVVFTTREFE 287 (873)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~-~~~~l~~~~~~gs~iivTtR~~~ 287 (873)
+ .. .....+.....+.+.+ .+++.+|++|+++... +... +.+.+. ...-++|-||...+
T Consensus 257 --g---~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~---~G~l~~IgaTT~~e 327 (852)
T TIGR03345 257 --G---AS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA---RGELRTIAATTWAE 327 (852)
T ss_pred --c---cc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh---CCCeEEEEecCHHH
Confidence 0 00 0111222222333322 2468999999996531 1111 223332 22356776666543
Q ss_pred hhhcc-------ccccceeeccCChhhhHHHHHHHhcCCCC-CCCCChHHHHHHHHHHhCCc
Q 002863 288 VCGQM-------EAHRSFKVECLRYDDAWKLFELKVGADTL-DSHPDIPELAETLAKDCGGL 341 (873)
Q Consensus 288 v~~~~-------~~~~~~~l~~L~~~e~~~lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~gl 341 (873)
....+ .....+.+++++.+++.+++......-.. ..-.-..+....+++.+.+.
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 31111 12357999999999999997644422110 01111234456666666553
No 140
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.89 E-value=0.0002 Score=74.94 Aligned_cols=132 Identities=13% Similarity=0.110 Sum_probs=70.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhcc
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSK 246 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 246 (873)
-+.++|++|+||||+|+.++..... ........|+.++. .++ ...+.. .+... ...+.+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~----~~l----~~~~~g-------~~~~~-~~~~~~~a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR----DDL----VGQYIG-------HTAPK-TKEILKRA-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH----HHH----hHhhcc-------cchHH-HHHHHHHc--
Confidence 5789999999999999888776521 12221123444442 122 111111 11111 11222222
Q ss_pred CCeEEEEeccccc------cc-----cccccccCCCCCCCCcEEEEEccchhhhhcc--------ccccceeeccCChhh
Q 002863 247 KKFVLLLDDMWEL------VD-----LDQVGLPIPSRTSVSNKVVFTTREFEVCGQM--------EAHRSFKVECLRYDD 307 (873)
Q Consensus 247 k~~LlVlDdv~~~------~~-----~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~e 307 (873)
..-+|+||++... .+ ++.+...+... ..+.+||+++......... .....+++++++.+|
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~-~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ-RDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC-CCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 3468999999632 11 22233333333 4455777776543221111 113568999999999
Q ss_pred hHHHHHHHhcC
Q 002863 308 AWKLFELKVGA 318 (873)
Q Consensus 308 ~~~lf~~~~~~ 318 (873)
-.+++...+..
T Consensus 200 l~~I~~~~l~~ 210 (284)
T TIGR02880 200 LLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999887754
No 141
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.88 E-value=0.00057 Score=72.58 Aligned_cols=203 Identities=15% Similarity=0.164 Sum_probs=120.5
Q ss_pred CCcccchhHHHHHHHHHHhc----CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHH
Q 002863 143 PPTVVGLQLTFDRVWRCLME----EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIA 218 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 218 (873)
+..++||+.+++.+.+|+.. ...+-+-|.|-+|.|||.+...++.+...-... -+++++.+..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 46789999999999999864 356788899999999999999999887222222 2456666665456667777777
Q ss_pred HHhCCCCccccccCHHHHHHHHHHHhcc--CCeEEEEeccccccc--ccccc--ccCCCCCCCCcEEEEEccchhh--h-
Q 002863 219 KKIGLFNESWKNKSMQEKAQQIFNILSK--KKFVLLLDDMWELVD--LDQVG--LPIPSRTSVSNKVVFTTREFEV--C- 289 (873)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~--~~~~~--~~l~~~~~~gs~iivTtR~~~v--~- 289 (873)
..+--... ......+....+.....+ +.+|+|+|..+.... -..+. ..++. -.++|+|+.---..+ .
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~--lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK--LPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc--CCcceeeeeeehhhhhHHH
Confidence 66511000 111224445555555544 368999999864311 11111 12222 345565554321111 1
Q ss_pred ----h----ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCC----chhHHHHHHHHH
Q 002863 290 ----G----QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGG----LPLALITVGRAM 352 (873)
Q Consensus 290 ----~----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g----lPLai~~~~~~l 352 (873)
+ .--....+...+.+.++-.++|..+..... .........+.+++||.| +--|+.+.-+++
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~--t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES--TSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc--ccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 0 012345788899999999999998875543 122233344555566554 444444444433
No 142
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.85 E-value=0.00012 Score=82.37 Aligned_cols=157 Identities=20% Similarity=0.217 Sum_probs=92.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhc
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS 245 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (873)
.-+.|+|++|+|||+||+++++.. .....--.+.+++. .++...+...+.. ... ..+.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~-~~~~~~~~v~yi~~------~~~~~~~~~~~~~-------~~~----~~~~~~~~ 210 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYI-LEKNPNAKVVYVTS------EKFTNDFVNALRN-------NTM----EEFKEKYR 210 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEEEH------HHHHHHHHHHHHc-------CcH----HHHHHHHh
Confidence 568899999999999999999987 21111123455533 2333444444321 111 22333333
Q ss_pred cCCeEEEEeccccccc---c-ccccccCCCCCCCCcEEEEEccchh---------hhhccccccceeeccCChhhhHHHH
Q 002863 246 KKKFVLLLDDMWELVD---L-DQVGLPIPSRTSVSNKVVFTTREFE---------VCGQMEAHRSFKVECLRYDDAWKLF 312 (873)
Q Consensus 246 ~k~~LlVlDdv~~~~~---~-~~~~~~l~~~~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~lf 312 (873)
+.-+|||||++.... + +.+...+......|..||+||.... +...+.....+++++.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 345899999964311 1 2222211111123456888886531 1223344567899999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHhCCchhH
Q 002863 313 ELKVGADTLDSHPDIPELAETLAKDCGGLPLA 344 (873)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 344 (873)
++.+.......+ +++...|++.+.|..-.
T Consensus 290 ~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 290 KKKAEEEGIDLP---DEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHHcCCCCC---HHHHHHHHcCcCCCHHH
Confidence 998864332222 46688899998887653
No 143
>PRK06620 hypothetical protein; Validated
Probab=97.85 E-value=9.6e-05 Score=73.63 Aligned_cols=132 Identities=11% Similarity=0.030 Sum_probs=77.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhc
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS 245 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (873)
+.+.|+|++|+|||+|++.+++.. . . .++. ..+. . + +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~-~--~-----~~~~--~~~~----------------------~-~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS-N--A-----YIIK--DIFF----------------------N-E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc-C--C-----EEcc--hhhh----------------------c-h-------hHH-
Confidence 568999999999999999987765 1 1 1111 0000 0 0 011
Q ss_pred cCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhh-------hhccccccceeeccCChhhhHHHHHHHhcC
Q 002863 246 KKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEV-------CGQMEAHRSFKVECLRYDDAWKLFELKVGA 318 (873)
Q Consensus 246 ~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v-------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 318 (873)
+..-++++||++...+ ..+...+......|..||+|++...- ...+....++++++++.++-..++++.+..
T Consensus 84 ~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 84 EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 1335788999963221 11211111111345689999885432 222344557999999999988888887653
Q ss_pred CCCCCCCChHHHHHHHHHHhCCch
Q 002863 319 DTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 319 ~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
.....+ +++..-|++.+.|.-
T Consensus 163 ~~l~l~---~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 163 SSVTIS---RQIIDFLLVNLPREY 183 (214)
T ss_pred cCCCCC---HHHHHHHHHHccCCH
Confidence 221122 566777888877644
No 144
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00048 Score=79.54 Aligned_cols=193 Identities=12% Similarity=0.118 Sum_probs=107.3
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
..++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.. - +...+... ...+..-...+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L-~-c~~~~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL-N-CLNSDKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh-c-CCCcCCCC----CCCCcccHHHHHHhcCCC
Confidence 3579999999999999887653 578899999999999999998876 1 11111000 001111122222222111
Q ss_pred CCC---ccccccCHHHHHHHHHHHh-----ccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEccc-hhhhhc
Q 002863 223 LFN---ESWKNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTRE-FEVCGQ 291 (873)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~~v~~~ 291 (873)
... +.......+ .++.+.+.+ .+++-++|+|+++.. .....+...+..- .....+|++|.+ ..+...
T Consensus 90 ~D~~ei~~~~~~~vd-~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP-p~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 90 LDVIEIDAASNTGVD-NIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP-PPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred ccEEEEeccccCCHH-HHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC-CcCeEEEEEeCChhhhhHH
Confidence 100 000011111 112222222 245568999999754 2344454444432 334555555443 333221
Q ss_pred -cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHH
Q 002863 292 -MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALIT 347 (873)
Q Consensus 292 -~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 347 (873)
......+++..++.++....+.+.+........ .+.+..|++.++|.+..+..
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 234567888899999988888877654331111 35578899999997754443
No 145
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.82 E-value=0.00015 Score=79.61 Aligned_cols=169 Identities=18% Similarity=0.245 Sum_probs=94.9
Q ss_pred cccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 145 TVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++.|.+..++++.+.+.- ....-+.++|++|+|||++|+++++.. ...| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~se----- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSE----- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecch-----
Confidence 468899988888877631 134567899999999999999999976 2333 1121111
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHH-HhccCCeEEEEeccccccc----------------cccccccCCC-CC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFN-ILSKKKFVLLLDDMWELVD----------------LDQVGLPIPS-RT 273 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~-~~ 273 (873)
+.. .. .... ......+.. ...+.+.+|+||+++.... +..+...+.. ..
T Consensus 253 -L~~----k~-------~Ge~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 -LIQ----KY-------LGDG-PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred -hhh----hh-------cchH-HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 111 00 0011 112222222 2245788999999853210 0011111111 00
Q ss_pred CCCcEEEEEccchhhhhc-c----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCc
Q 002863 274 SVSNKVVFTTREFEVCGQ-M----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGL 341 (873)
Q Consensus 274 ~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 341 (873)
..+.+||.||...+.... + .....+.+...+.++..++|..++.........++ ..++..+.|+
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~ 388 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDEL 388 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCC
Confidence 235678888876543221 1 12457899999999999999988765443333333 4455555554
No 146
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.81 E-value=0.00015 Score=79.07 Aligned_cols=170 Identities=15% Similarity=0.235 Sum_probs=95.5
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccH
Q 002863 144 PTVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 210 (873)
.++.|.+..++++.+.+.- ...+-|.++|++|+|||++|+++++.. ...| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f-----i~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF-----IRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 3578988888888776531 135678899999999999999999876 2232 22211
Q ss_pred HHHHHHHHHHhCCCCccccccCHHHHHHHHHH-HhccCCeEEEEecccccc------------c----cccccccCCC-C
Q 002863 211 EKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN-ILSKKKFVLLLDDMWELV------------D----LDQVGLPIPS-R 272 (873)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~-~ 272 (873)
..+... ..+ .. ......+.. .....+.+|++|+++... . +..+...+.. .
T Consensus 213 s~l~~k---~~g--------e~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 SEFVQK---YLG--------EG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred HHHHHH---hcc--------hh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 111111 011 11 112222222 234678999999986321 0 1111111111 0
Q ss_pred CCCCcEEEEEccchhhhhc--c---ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCc
Q 002863 273 TSVSNKVVFTTREFEVCGQ--M---EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGL 341 (873)
Q Consensus 273 ~~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 341 (873)
...+..||+||...+.... . .-...+.++..+.++..++|+.+........+.++ .++++.+.|.
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~ 350 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKI 350 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCC
Confidence 1245678888876543211 1 22456889999999988899877654432233333 4556666664
No 147
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.80 E-value=6.9e-07 Score=98.16 Aligned_cols=121 Identities=29% Similarity=0.362 Sum_probs=94.9
Q ss_pred cccceEEEEeecccccccccc-CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC---CccccCcccCCEE
Q 002863 502 MWKDVTRMSLMDNKIKRLTVS-PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL---PCEISNLVSLQYL 577 (873)
Q Consensus 502 ~~~~l~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l---p~~i~~L~~L~~L 577 (873)
.|.++...++++|.+..+... .-++.|+.|+|++|+++... ++..|++|++|||++|.+ |..-..-.+|+.|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH----HHHhcccccccccccchhccccccchhhhhheee
Confidence 467888889999988776655 45689999999999987764 588999999999999933 4321112349999
Q ss_pred ecCCCCCCccchhhhcCCCCcEeeccccccccc---cChhhhCCCcccceEecccc
Q 002863 578 DLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSR---ISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 578 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~---l~~~~i~~l~~L~~L~l~~~ 630 (873)
.|+||-++++ .++.+|.+|+.||+++| -+.. +.+ ++.|..|+.|++.||
T Consensus 238 ~lrnN~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~p--LwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 238 NLRNNALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEP--LWSLSSLIVLWLEGN 289 (1096)
T ss_pred eecccHHHhh-hhHHhhhhhhccchhHh-hhhcchhhhH--HHHHHHHHHHhhcCC
Confidence 9999988888 46899999999999998 4543 333 677889999999885
No 148
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.79 E-value=0.00031 Score=77.96 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=87.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhc
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS 245 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (873)
.-+.|+|+.|+|||+|++++++.... .. -.+++++ ...+...+...+... . ...++..++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~--~~-~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE--SG-GKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH--cC-CCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHcc
Confidence 46889999999999999999998621 12 2344543 233444444444310 1 122333333
Q ss_pred cCCeEEEEeccccccc--c--ccccccCCCCCCCCcEEEEEccch---------hhhhccccccceeeccCChhhhHHHH
Q 002863 246 KKKFVLLLDDMWELVD--L--DQVGLPIPSRTSVSNKVVFTTREF---------EVCGQMEAHRSFKVECLRYDDAWKLF 312 (873)
Q Consensus 246 ~k~~LlVlDdv~~~~~--~--~~~~~~l~~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf 312 (873)
+.-+|++||+..... + +.+...+......|..||+||... .+...+.....+.+.+++.++-..++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 445888999965322 1 122222211002345788888642 12233344567899999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHhCCc
Q 002863 313 ELKVGADTLDSHPDIPELAETLAKDCGGL 341 (873)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 341 (873)
.+.+.......+ +++..-|++.+.|.
T Consensus 281 ~~k~~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCC
Confidence 988755432222 45566677777653
No 149
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.78 E-value=0.00017 Score=74.45 Aligned_cols=167 Identities=16% Similarity=0.204 Sum_probs=103.3
Q ss_pred CCcccchhHHHHHHHHHHhcCC---cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHH
Q 002863 143 PPTVVGLQLTFDRVWRCLMEEH---VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 219 (873)
.+.+.+|+.++..+...+.+.. ++.|.|+|..|.|||.+.+++.+.. .. ..+|+++-..++.+.++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHH
Confidence 4678999999999999887643 3566899999999999999999876 22 2589999999999999999999
Q ss_pred HhCCCCccccc-----cCHHHHHHHHHH--Hh--ccCCeEEEEecccccccccccccc----CCC-CCCCCcEEEEEccc
Q 002863 220 KIGLFNESWKN-----KSMQEKAQQIFN--IL--SKKKFVLLLDDMWELVDLDQVGLP----IPS-RTSVSNKVVFTTRE 285 (873)
Q Consensus 220 ~l~~~~~~~~~-----~~~~~~~~~l~~--~l--~~k~~LlVlDdv~~~~~~~~~~~~----l~~-~~~~gs~iivTtR~ 285 (873)
+.+........ .+..+....+.+ .. +++.++||||+++...|.+.+..+ +.. .......|+...-.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 98632211111 111122222222 11 246899999999765554432111 000 00222233332222
Q ss_pred h-hh-hhccccc--cceeeccCChhhhHHHHHHH
Q 002863 286 F-EV-CGQMEAH--RSFKVECLRYDDAWKLFELK 315 (873)
Q Consensus 286 ~-~v-~~~~~~~--~~~~l~~L~~~e~~~lf~~~ 315 (873)
. .. -..++.. .++..+..+.+|...++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 1 11 1113333 34567788888888887653
No 150
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.75 E-value=0.0011 Score=67.78 Aligned_cols=190 Identities=18% Similarity=0.192 Sum_probs=110.2
Q ss_pred HHHHHHHHhc---CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCC---CCceEEEEEeCCcccHHHHHHHHHHHhCCCCc
Q 002863 153 FDRVWRCLME---EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPN---HFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNE 226 (873)
Q Consensus 153 ~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 226 (873)
++++.+.+.. ...+-+.|+|.+|+|||++++++...+..... .--.++.|.....++...+...|+.+++.+..
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 4444444433 24567899999999999999999877621111 11147777888889999999999999998753
Q ss_pred cccccCHHHHHHHHHHHhcc-CCeEEEEeccccccc---------cccccccCCCCCCCCcEEEEEccchhhhhcc----
Q 002863 227 SWKNKSMQEKAQQIFNILSK-KKFVLLLDDMWELVD---------LDQVGLPIPSRTSVSNKVVFTTREFEVCGQM---- 292 (873)
Q Consensus 227 ~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~---- 292 (873)
...+...........++. +--+||+|++++.-. +..+ ..+... -.-+-|.+-|++---+-..
T Consensus 126 --~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~Ne-L~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 126 --PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNE-LQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred --CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhc-cCCCeEEeccHHHHHHhccCHHH
Confidence 233444444455555543 556899999986311 1111 112111 2233455555542211111
Q ss_pred -ccccceeeccCChhhhH-HHHHHHhcC--CCCCCCCChHHHHHHHHHHhCCchhHHH
Q 002863 293 -EAHRSFKVECLRYDDAW-KLFELKVGA--DTLDSHPDIPELAETLAKDCGGLPLALI 346 (873)
Q Consensus 293 -~~~~~~~l~~L~~~e~~-~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~glPLai~ 346 (873)
.....+.++.-..++-. .|+...... -...+.-..++++..|...++|+.=-+.
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 12345666666655444 344332211 1112233457889999999999864444
No 151
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=4.6e-05 Score=71.56 Aligned_cols=80 Identities=25% Similarity=0.382 Sum_probs=53.0
Q ss_pred ceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC-----CccccCcccCCEEec
Q 002863 505 DVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL-----PCEISNLVSLQYLDL 579 (873)
Q Consensus 505 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l-----p~~i~~L~~L~~L~L 579 (873)
....+++++|.+..++..+.++.|.+|.+.+|.|+.+. +..-.-+++|..|.|.+|+| -..+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~--p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID--PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeec--cchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 45667788888887777788888888888888887777 44455566677777777744 122344555555555
Q ss_pred CCCCCCc
Q 002863 580 SNSIPDR 586 (873)
Q Consensus 580 ~~~~i~~ 586 (873)
-+|.+..
T Consensus 121 l~Npv~~ 127 (233)
T KOG1644|consen 121 LGNPVEH 127 (233)
T ss_pred cCCchhc
Confidence 5554443
No 152
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00078 Score=76.92 Aligned_cols=190 Identities=15% Similarity=0.132 Sum_probs=106.2
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
.+++|-+..++.+..++..+.. +.+.++|+.|+||||+|+.+++.. -....... ..+.....- +.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L-~c~~~~~~---~pC~~C~~C----~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL-NCVNGPTP---MPCGECSSC----KSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh-ccccCCCC---CCCccchHH----HHHHcCCC
Confidence 4589999999999999987654 468899999999999999998875 11110000 000000000 11111000
Q ss_pred CCCccc---cccCHHHHHHHHHHH-----hccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccc-hhhhhc
Q 002863 223 LFNESW---KNKSMQEKAQQIFNI-----LSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTRE-FEVCGQ 291 (873)
Q Consensus 223 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~-~~v~~~ 291 (873)
...-.. .....++.. .+.+. ..+++-++|+|++.... .++.+...+... ...+.+|++|.. ..+...
T Consensus 88 ~dv~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-p~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-PPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCeEEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccC-CCCEEEEEecCChHHhHHH
Confidence 000000 001112211 12211 23566689999997543 344454444433 445666665543 333221
Q ss_pred -cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHH
Q 002863 292 -MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALI 346 (873)
Q Consensus 292 -~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 346 (873)
......+++.+++.++....+.+.+....... -++.+..|++.++|.+-.+.
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 23355789999999999888888765433221 24567789999999775433
No 153
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.72 E-value=5.5e-06 Score=72.42 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=74.7
Q ss_pred EEEeeccccccccc----cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCcccCCEEecC
Q 002863 508 RMSLMDNKIKRLTV----SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNLVSLQYLDLS 580 (873)
Q Consensus 508 ~l~l~~~~~~~l~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L~~L~L~ 580 (873)
.++++.+.+..++. ......|...+|++|.+..+| ..+-..++-+..|+|++| .+|..+..++.|+.|+++
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp--~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFP--KKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCC--HHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 34445554443322 245566777888888888887 666677778888888888 557778888888888888
Q ss_pred CCCCCccchhhhcCCCCcEeeccccccccccChh
Q 002863 581 NSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQ 614 (873)
Q Consensus 581 ~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~ 614 (873)
+|.+...|.-|..|.+|-.|+..+| .+..+|-.
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 8888888888777888888888777 55666654
No 154
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.72 E-value=0.00021 Score=85.19 Aligned_cols=155 Identities=14% Similarity=0.199 Sum_probs=89.7
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCC--CC-CceEEEEEeCCcccHHHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTP--NH-FDFVIWVVVSRDLQLEKIQEIIAKK 220 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~-f~~~~wv~~s~~~~~~~~~~~i~~~ 220 (873)
+.++||+++++++++.|......-+.++|++|+|||++|+.+++...... .. .+..+|. + +...+.. .
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a----~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA----G 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh----h
Confidence 35899999999999988766555677999999999999999998762111 11 1233432 1 1111110 0
Q ss_pred hCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEecccccc----------cccc-ccccCCCCCCCCcEEEEEccchhh
Q 002863 221 IGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELV----------DLDQ-VGLPIPSRTSVSNKVVFTTREFEV 288 (873)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~~~~-~~~~l~~~~~~gs~iivTtR~~~v 288 (873)
.. .....++....+.+.+ +.++.+|++|+++... +... +...+.. ..-++|-+|...+.
T Consensus 253 ~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~---g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 253 TK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS---GKLRCIGSTTYEEY 323 (731)
T ss_pred cc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC---CCeEEEEecCHHHH
Confidence 00 0112333444444444 3468899999997321 1112 2222222 22355555554322
Q ss_pred hhc-------cccccceeeccCChhhhHHHHHHHh
Q 002863 289 CGQ-------MEAHRSFKVECLRYDDAWKLFELKV 316 (873)
Q Consensus 289 ~~~-------~~~~~~~~l~~L~~~e~~~lf~~~~ 316 (873)
... ......++++.++.++..++++...
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 111 1123478999999999999999665
No 155
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.72 E-value=0.00018 Score=77.34 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=83.6
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
++++|.++..+.+..++..+.. .++.++|++|+||||+|+.+++.. ... ...+..+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 4679999999999999887654 577779999999999999998875 111 23344443 122211111111110
Q ss_pred CCCccccccCHHHHHHHHHHHhccCCeEEEEeccccc--ccc-ccccccCCCCCCCCcEEEEEccchhh-hhc-cccccc
Q 002863 223 LFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL--VDL-DQVGLPIPSRTSVSNKVVFTTREFEV-CGQ-MEAHRS 297 (873)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~-~~~~~~l~~~~~~gs~iivTtR~~~v-~~~-~~~~~~ 297 (873)
. ..+.+.+-++|+||+... .+. ..+...+... ..++++|+||....- ... ......
T Consensus 94 ~------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 94 T------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-SKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred h------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhc-CCCceEEEEcCChhhchHHHHhhceE
Confidence 0 001234568999999754 111 2222223222 456788888865431 111 122346
Q ss_pred eeeccCChhhhHHHHHH
Q 002863 298 FKVECLRYDDAWKLFEL 314 (873)
Q Consensus 298 ~~l~~L~~~e~~~lf~~ 314 (873)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 77777788877766554
No 156
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.0005 Score=79.20 Aligned_cols=196 Identities=11% Similarity=0.113 Sum_probs=106.9
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
++++|.+..++.|..++..+.+ ..+.++|+.|+||||+|+.+++... -....+. ..++.-.....|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~-c~~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN-CEQGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-CCCCCCC-------CCCCccHHHHHHhcCCC
Confidence 4689999999999999887765 4678999999999999999887651 1111000 00000001111110000
Q ss_pred CCCccc---cccCHHHHHHHHHHHh-----ccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEE-Eccchhhhhc
Q 002863 223 LFNESW---KNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVF-TTREFEVCGQ 291 (873)
Q Consensus 223 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~~ 291 (873)
...-.. .....++ ++.+.+.+ .+++-++|+|+++... ....+...+..- ...+.+|+ ||....+...
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep-p~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP-PPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-CCCeEEEEEeCChhhhhHH
Confidence 000000 0011111 12222222 2455589999997542 233444333332 33456555 4444444322
Q ss_pred -cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch-hHHHHHHHHH
Q 002863 292 -MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP-LALITVGRAM 352 (873)
Q Consensus 292 -~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l 352 (873)
......+++.+++.++....+...+.......+ .+....|++.++|.. .|+..+-.++
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 234567899999999998888877654432222 455788999999855 5555554443
No 157
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=0.001 Score=75.23 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=91.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhc
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS 245 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (873)
..+.|+|..|+|||.|++++++...+.... -.+++++ ..++..++...+.. ... ..+++.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g-~~V~Yit------aeef~~el~~al~~-------~~~----~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPG-TRVRYVS------SEEFTNEFINSIRD-------GKG----DSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEee------HHHHHHHHHHHHHh-------ccH----HHHHHHhh
Confidence 458999999999999999999986211111 2345553 33444444433321 111 12333333
Q ss_pred cCCeEEEEecccccc---ccc-cccccCCCCCCCCcEEEEEccch---------hhhhccccccceeeccCChhhhHHHH
Q 002863 246 KKKFVLLLDDMWELV---DLD-QVGLPIPSRTSVSNKVVFTTREF---------EVCGQMEAHRSFKVECLRYDDAWKLF 312 (873)
Q Consensus 246 ~k~~LlVlDdv~~~~---~~~-~~~~~l~~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf 312 (873)
. -=+|||||+.... .|+ .+...+......|..|||||+.. .+...+...-.++++..+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 3578899997531 222 22222211113355788888853 22334455668899999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHHHhCCch
Q 002863 313 ELKVGADTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
.+++.......+ +++..-|++.+.+..
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rnv 482 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCCH
Confidence 988865442222 566777888777653
No 158
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.0035 Score=66.36 Aligned_cols=195 Identities=12% Similarity=0.127 Sum_probs=109.6
Q ss_pred cccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccC------------CCCCceEEEEEeCCcccHH
Q 002863 145 TVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDT------------PNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~~~f~~~~wv~~s~~~~~~ 211 (873)
+++|.+..++.+.+.+..+.+ +...++|+.|+||+++|..+.+...-. ...+.-..|+.-....+-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 579999999999999988764 789999999999999998887764110 1112223444321000000
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-----ccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEcc
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTR 284 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR 284 (873)
.+-..-++..+........... +.++.+.+.+ .+++-++|+|++.... ....+...+..- . .+.+|++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~i-d~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP-p-~~~fILi~~ 161 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRL-EQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP-G-NGTLILIAP 161 (314)
T ss_pred ccchhhhhhccccccccccCcH-HHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC-C-CCeEEEEEC
Confidence 0001111112211000011111 2233444444 3566799999996542 233343333332 3 335555554
Q ss_pred c-hhhhh-ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002863 285 E-FEVCG-QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITV 348 (873)
Q Consensus 285 ~-~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 348 (873)
+ ..+.. ..+....+++.++++++..+.+.+...... .......++..++|.|..+...
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 4 33322 234567899999999999999998743211 1111367899999999766543
No 159
>PRK10536 hypothetical protein; Provisional
Probab=97.67 E-value=0.00022 Score=71.27 Aligned_cols=134 Identities=13% Similarity=0.115 Sum_probs=74.2
Q ss_pred cccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEE--e--CCc--c---cHH----
Q 002863 145 TVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV--V--SRD--L---QLE---- 211 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~--~--s~~--~---~~~---- 211 (873)
.+.++......++.++.+. .+|.+.|++|+|||+||.++..+. -..+.|+.++-+. + ++. | +..
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHH
Confidence 3577888888999988664 499999999999999999988763 1123455443332 1 110 1 111
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHH--------HHHHHhccCCe---EEEEeccccccccccccccCCCCCCCCcEEE
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQ--------QIFNILSKKKF---VLLLDDMWELVDLDQVGLPIPSRTSVSNKVV 280 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~--------~l~~~l~~k~~---LlVlDdv~~~~~~~~~~~~l~~~~~~gs~ii 280 (873)
..+.-+...+..-. .....+.... .-..+++|+.+ +||+|++.+... ..+...+... +.+|++|
T Consensus 133 p~~~pi~D~L~~~~---~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~-g~~sk~v 207 (262)
T PRK10536 133 PYFRPVYDVLVRRL---GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRL-GENVTVI 207 (262)
T ss_pred HHHHHHHHHHHHHh---ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhc-CCCCEEE
Confidence 11222222221000 0000111100 00145677765 999999977543 3333333333 6789999
Q ss_pred EEccch
Q 002863 281 FTTREF 286 (873)
Q Consensus 281 vTtR~~ 286 (873)
+|--..
T Consensus 208 ~~GD~~ 213 (262)
T PRK10536 208 VNGDIT 213 (262)
T ss_pred EeCChh
Confidence 987544
No 160
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.0015 Score=75.01 Aligned_cols=189 Identities=13% Similarity=0.132 Sum_probs=103.5
Q ss_pred CcccchhHHHHHHHHHHhcCC-cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEH-VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
++++|.+..++.+.+++..+. .+.+.++|+.|+||||+|+.+.+.. .....-+ ..+++.-...+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal-~c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV-NCLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 468999999999999998765 4567789999999999999987764 1111000 000010011111111100
Q ss_pred CCCccc---cccCHHHHHHHHHHHh-----ccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEE-Eccchhhhhc
Q 002863 223 LFNESW---KNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVF-TTREFEVCGQ 291 (873)
Q Consensus 223 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~~ 291 (873)
...-.. ..... +.++.+.+.. .++.-++|+|++... ..+..+...+... .....+|+ ||....+...
T Consensus 88 ~dv~eidaas~~~v-d~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep-p~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 88 MDVIEIDAASNNGV-DEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP-PAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCeEEeeccccCCH-HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC-CCCeEEEEEeCChhhCcHH
Confidence 000000 00111 1122222221 356668899999754 2344444444332 33445554 4444333221
Q ss_pred -cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHH
Q 002863 292 -MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLAL 345 (873)
Q Consensus 292 -~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 345 (873)
......+.+.+++.++....+...+.......+ .+....|++.++|.+..+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 233567889999999999888887754332121 455778899998876533
No 161
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.60 E-value=0.00021 Score=86.25 Aligned_cols=154 Identities=16% Similarity=0.209 Sum_probs=89.0
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCC---CceEEEEEeCCcccHHHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNH---FDFVIWVVVSRDLQLEKIQEIIAKK 220 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~~i~~~ 220 (873)
+.++||+++++++++.|......-+.++|++|+|||++|+.++......... -+..+|. + +...++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a----- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA----- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc-----
Confidence 3479999999999999976555556799999999999999998876211111 1234442 1 2222111
Q ss_pred hCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEecccccc---------ccccc-cccCCCCCCCCcEEEEEccchhhh
Q 002863 221 IGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELV---------DLDQV-GLPIPSRTSVSNKVVFTTREFEVC 289 (873)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~~-~~~l~~~~~~gs~iivTtR~~~v~ 289 (873)
|.. .....++....+.+.+ ..++.+|++|+++... +...+ ...+. .+.-++|.+|...+..
T Consensus 249 -g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~---rg~l~~IgaTt~~ey~ 320 (821)
T CHL00095 249 -GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA---RGELQCIGATTLDEYR 320 (821)
T ss_pred -cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh---CCCcEEEEeCCHHHHH
Confidence 110 1112333444444433 3468999999996321 11122 22222 1234666666655432
Q ss_pred hc-------cccccceeeccCChhhhHHHHHHH
Q 002863 290 GQ-------MEAHRSFKVECLRYDDAWKLFELK 315 (873)
Q Consensus 290 ~~-------~~~~~~~~l~~L~~~e~~~lf~~~ 315 (873)
.. ......+.+...+.++...++...
T Consensus 321 ~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 321 KHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 21 122346788888989988888754
No 162
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.0012 Score=70.23 Aligned_cols=95 Identities=8% Similarity=0.068 Sum_probs=60.0
Q ss_pred cCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEccchh-hh-hccccccceeeccCChhhhHHHHHHHhcCCCC
Q 002863 246 KKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTREFE-VC-GQMEAHRSFKVECLRYDDAWKLFELKVGADTL 321 (873)
Q Consensus 246 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 321 (873)
+++-++|+|+++.. .....+...+..- ..++.+|+||.+.+ +. ...+....+.+.+++.+++.+.+.+.....
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-p~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEP-SGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCC-CCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC--
Confidence 44556678999764 2333443333332 44567777776653 32 223346779999999999999888764211
Q ss_pred CCCCChHHHHHHHHHHhCCchhHHHHH
Q 002863 322 DSHPDIPELAETLAKDCGGLPLALITV 348 (873)
Q Consensus 322 ~~~~~~~~~~~~i~~~c~glPLai~~~ 348 (873)
..+.+..++..++|.|+.+..+
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1234567889999999866544
No 163
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.56 E-value=0.0028 Score=62.79 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=37.2
Q ss_pred CcccchhHHHHHHHHHH----hcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCL----MEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.++|.+..++.|++-. ......-+.+||..|+|||++++++.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 56899999988886643 23345567789999999999999999987
No 164
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.55 E-value=0.0018 Score=73.87 Aligned_cols=171 Identities=14% Similarity=0.149 Sum_probs=92.0
Q ss_pred CcccchhHHHHHHHHHHh---c---------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCLM---E---------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.++.++++.+.+. . ...+-+.++|++|+|||++|+.+++.. ... ++.++..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~-----~~~i~~~---- 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVP-----FFSISGS---- 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCC-----eeeccHH----
Confidence 357888877666654432 1 123457899999999999999999875 222 2333211
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccc------------cc----cccccCCCC-CC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD------------LD----QVGLPIPSR-TS 274 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------------~~----~~~~~l~~~-~~ 274 (873)
++.... .+ .........+.......+.+|++||++.... +. .+...+... ..
T Consensus 123 ~~~~~~---~g--------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVEMF---VG--------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHHHH---hc--------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 111110 11 1112222222233345779999999954210 11 111111110 02
Q ss_pred CCcEEEEEccchhh-----hhccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCc
Q 002863 275 VSNKVVFTTREFEV-----CGQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGL 341 (873)
Q Consensus 275 ~gs~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 341 (873)
.+..||.||...+. .+.......+.++..+.++-.++|+.+.......... ....+++.+.|.
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~----~l~~la~~t~G~ 259 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDV----DLKAVARRTPGF 259 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcch----hHHHHHHhCCCC
Confidence 34456667765432 1111234568888889999999998877544322111 245788888774
No 165
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.55 E-value=0.00063 Score=75.91 Aligned_cols=158 Identities=15% Similarity=0.185 Sum_probs=88.1
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCC---CCceEEEEEeCCc
Q 002863 144 PTVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPN---HFDFVIWVVVSRD 207 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~s~~ 207 (873)
.++.|.+..++++.+.+.- ...+-+.++|++|+|||++|+++++.. .... ......|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL-~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL-AQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh-ccccccccCCceeEEeccch
Confidence 3467899998888877531 134568899999999999999999986 2110 1223344444321
Q ss_pred ccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-----ccCCeEEEEecccccc---------cc-----cccccc
Q 002863 208 LQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV---------DL-----DQVGLP 268 (873)
Q Consensus 208 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~---------~~-----~~~~~~ 268 (873)
+++. .. .. ..+.....+.+.. .+++++|+||+++... +. ..+...
T Consensus 261 ----eLl~----ky-------vG-ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 261 ----ELLN----KY-------VG-ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred ----hhcc----cc-------cc-hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 1110 00 00 0111122222222 3578999999997421 11 122222
Q ss_pred CCCCC-CCCcEEEEEccchhhhh-cc----ccccceeeccCChhhhHHHHHHHhcC
Q 002863 269 IPSRT-SVSNKVVFTTREFEVCG-QM----EAHRSFKVECLRYDDAWKLFELKVGA 318 (873)
Q Consensus 269 l~~~~-~~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~ 318 (873)
+.... ..+..||.||...+... .+ .-...|+++..+.++..++|+.+...
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 22110 13445666665543321 11 12446899999999999999988743
No 166
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.54 E-value=6.5e-05 Score=53.21 Aligned_cols=36 Identities=44% Similarity=0.593 Sum_probs=20.1
Q ss_pred cceEEecCCC---CCCccccCcccCCEEecCCCCCCccc
Q 002863 553 SLRVLKLSHS---DLPCEISNLVSLQYLDLSNSIPDRLP 588 (873)
Q Consensus 553 ~Lr~L~L~~n---~lp~~i~~L~~L~~L~L~~~~i~~lp 588 (873)
+|++|++++| .+|..+++|++|++|++++|.+..+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4555555555 33444666666666666666665554
No 167
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.52 E-value=0.00055 Score=80.65 Aligned_cols=155 Identities=16% Similarity=0.236 Sum_probs=89.6
Q ss_pred cccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCC---CceEEEEEeCCcccHHHHHHHHHHHh
Q 002863 145 TVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNH---FDFVIWVVVSRDLQLEKIQEIIAKKI 221 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~~i~~~l 221 (873)
.++||+++++++++.|......-+.++|++|+|||++|+.+++........ .++.+|.. +...+ +.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--
Confidence 479999999999998877544555689999999999999998865221111 23444421 11111 10
Q ss_pred CCCCccccccCHHHHHHHHHHHh-ccCCeEEEEeccccc----------cccccccccCCCCCCCCcEEEEEccchhhhh
Q 002863 222 GLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWEL----------VDLDQVGLPIPSRTSVSNKVVFTTREFEVCG 290 (873)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 290 (873)
+.. ...+.+.....+...+ +.++.+|++|+++.. .+...+..++.. ...-++|-+|...+...
T Consensus 256 G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSN 329 (758)
T ss_pred ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHHH
Confidence 100 0112333334444444 346789999999642 112122222222 22345665555444311
Q ss_pred c-------cccccceeeccCChhhhHHHHHHHh
Q 002863 291 Q-------MEAHRSFKVECLRYDDAWKLFELKV 316 (873)
Q Consensus 291 ~-------~~~~~~~~l~~L~~~e~~~lf~~~~ 316 (873)
. ...-..+.++..+.+++.++++...
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 1123478999999999999998654
No 168
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=6.3e-05 Score=87.57 Aligned_cols=126 Identities=21% Similarity=0.287 Sum_probs=79.5
Q ss_pred cceEEEEeecccccc--cc--ccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCCC--ccccCcccCCEE
Q 002863 504 KDVTRMSLMDNKIKR--LT--VSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDLP--CEISNLVSLQYL 577 (873)
Q Consensus 504 ~~l~~l~l~~~~~~~--l~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~lp--~~i~~L~~L~~L 577 (873)
.++++|++++...-. .+ -...+|.|++|.+.+-.+..... ...+.++++|+.||+|++++. ..+++|+||+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhH-HHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 378888887753321 11 12567888888888766533321 345678888888888888553 467788888888
Q ss_pred ecCCCCCCccc--hhhhcCCCCcEeecccccccccc--Chh---hhCCCcccceEecccc
Q 002863 578 DLSNSIPDRLP--LGLKYLVNLKCLNLEYTFRLSRI--SPQ---VISNLKMLRVLRMFEC 630 (873)
Q Consensus 578 ~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~l~~l--~~~---~i~~l~~L~~L~l~~~ 630 (873)
.+.+-.+..-+ ..+.+|++|+.||+|........ ... .-..||+|+.|+.++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 88776555433 34677888888888876322211 110 0133778888887763
No 169
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.00087 Score=71.96 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=85.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI 243 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (873)
....+.|||..|.|||.|++++.+.. .........+.++. +.....++..+. +...+..++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~s----e~f~~~~v~a~~-----------~~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLTS----EDFTNDFVKALR-----------DNEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEeccH----HHHHHHHHHHHH-----------hhhHHHHHHh
Confidence 36789999999999999999999987 23333233333332 233333333321 1223344444
Q ss_pred hccCCeEEEEecccccc---ccc-cccccCCCCCCCCcEEEEEccch---------hhhhccccccceeeccCChhhhHH
Q 002863 244 LSKKKFVLLLDDMWELV---DLD-QVGLPIPSRTSVSNKVVFTTREF---------EVCGQMEAHRSFKVECLRYDDAWK 310 (873)
Q Consensus 244 l~~k~~LlVlDdv~~~~---~~~-~~~~~l~~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~ 310 (873)
. .-=++++||++... .|+ .+...|..-...|-.||+|++.. .+...+...-.+++.+.+.+....
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 4 33488899997532 222 22222222113344899999753 234445566789999999999999
Q ss_pred HHHHHhcCCCCCCC
Q 002863 311 LFELKVGADTLDSH 324 (873)
Q Consensus 311 lf~~~~~~~~~~~~ 324 (873)
++.+++.......+
T Consensus 252 iL~kka~~~~~~i~ 265 (408)
T COG0593 252 ILRKKAEDRGIEIP 265 (408)
T ss_pred HHHHHHHhcCCCCC
Confidence 99998765553333
No 170
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.51 E-value=2.5e-05 Score=76.35 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=16.5
Q ss_pred CCcccEEEecCCccccCCC--CchhhhcCCcceEEecCC
Q 002863 525 SPRLLTLFLNSNYFKNDKV--NYHFFKSMASLRVLKLSH 561 (873)
Q Consensus 525 ~~~L~~L~l~~n~l~~~~~--~~~~~~~l~~Lr~L~L~~ 561 (873)
+..+..++|++|.|..-.. ....+.+-++|++.+++.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 4455566666665433220 012233444555555544
No 171
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.51 E-value=0.00067 Score=81.89 Aligned_cols=155 Identities=17% Similarity=0.198 Sum_probs=87.2
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccC--CCC-CceE-EEEEeCCcccHHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDT--PNH-FDFV-IWVVVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~-f~~~-~wv~~s~~~~~~~~~~~i~~ 219 (873)
+.++||+.+++++++.|......-+.++|++|+||||+|+.+....... ... .... +++.++. +..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~a---- 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVA---- 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhh----
Confidence 3489999999999999977666667799999999999999998876211 000 1222 2222221 110
Q ss_pred HhCCCCccccccCHHHHHHHHHHHh--ccCCeEEEEecccccc---------ccccccccCCCCCCCCcEEEEEccchhh
Q 002863 220 KIGLFNESWKNKSMQEKAQQIFNIL--SKKKFVLLLDDMWELV---------DLDQVGLPIPSRTSVSNKVVFTTREFEV 288 (873)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~gs~iivTtR~~~v 288 (873)
+. . .....++....+.+.+ .+++.+|++|+++... +...+..+... .+.-++|-||...+.
T Consensus 248 --g~---~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 248 --GA---K-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEY 319 (857)
T ss_pred --cc---c-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcCCCHHH
Confidence 00 0 0112233333333332 2578999999997432 11222222222 223466665555443
Q ss_pred hhcc-------ccccceeeccCChhhhHHHHHHHh
Q 002863 289 CGQM-------EAHRSFKVECLRYDDAWKLFELKV 316 (873)
Q Consensus 289 ~~~~-------~~~~~~~l~~L~~~e~~~lf~~~~ 316 (873)
...+ .....+.+...+.++...+++...
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1111 122356777778899998887654
No 172
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.49 E-value=2.4e-05 Score=76.41 Aligned_cols=68 Identities=22% Similarity=0.169 Sum_probs=31.0
Q ss_pred cccccEEEEccccCCCc--C----cc--cccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcc
Q 002863 729 FHSLQNVYISHSKLRQV--T----WL--ILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLN 800 (873)
Q Consensus 729 l~~L~~L~L~~~~l~~l--~----~l--~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 800 (873)
.+.|+.|.+..|-++.- . .+ ...|+|..|...+|..-..++..-++.. ..-..+|-|..|.+.+ +
T Consensus 241 W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~------~e~~~~p~L~~le~ng-N 313 (388)
T COG5238 241 WNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNE------FEQDAVPLLVDLERNG-N 313 (388)
T ss_pred cchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhh------hhhcccHHHHHHHHcc-C
Confidence 34566666666644331 1 11 1246666666666654433322111110 1223456666666655 3
Q ss_pred ccc
Q 002863 801 NLK 803 (873)
Q Consensus 801 ~L~ 803 (873)
.++
T Consensus 314 r~~ 316 (388)
T COG5238 314 RIK 316 (388)
T ss_pred cch
Confidence 443
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.48 E-value=0.00035 Score=64.86 Aligned_cols=89 Identities=22% Similarity=0.181 Sum_probs=49.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhc
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS 245 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (873)
..+.|+|++|+||||+|+.++... . .....++++..+........... ...... .............+.+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL-G--PPGGGVIYIDGEDILEEVLDQLL-LIIVGG---KKASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc-C--CCCCCEEEECCEEccccCHHHHH-hhhhhc---cCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999887 2 22123455544433221111111 000000 0022233334445555555
Q ss_pred cC-CeEEEEeccccccc
Q 002863 246 KK-KFVLLLDDMWELVD 261 (873)
Q Consensus 246 ~k-~~LlVlDdv~~~~~ 261 (873)
.. ..++++|++.....
T Consensus 76 ~~~~~viiiDei~~~~~ 92 (148)
T smart00382 76 KLKPDVLILDEITSLLD 92 (148)
T ss_pred hcCCCEEEEECCcccCC
Confidence 44 49999999987543
No 174
>PRK08116 hypothetical protein; Validated
Probab=97.48 E-value=0.00016 Score=74.75 Aligned_cols=102 Identities=25% Similarity=0.202 Sum_probs=57.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhc
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS 245 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (873)
..+.++|.+|+|||.||.++++... . . -..+++++ ..+++..+....... ...+.. .+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~-~-~-~~~v~~~~------~~~ll~~i~~~~~~~----~~~~~~----~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI-E-K-GVPVIFVN------FPQLLNRIKSTYKSS----GKEDEN----EIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-H-c-CCeEEEEE------HHHHHHHHHHHHhcc----ccccHH----HHHHHhc
Confidence 3578999999999999999999872 1 2 23355553 445555555444321 111122 2334444
Q ss_pred cCCeEEEEecccc--cccccc--ccccCCCCCCCCcEEEEEccc
Q 002863 246 KKKFVLLLDDMWE--LVDLDQ--VGLPIPSRTSVSNKVVFTTRE 285 (873)
Q Consensus 246 ~k~~LlVlDdv~~--~~~~~~--~~~~l~~~~~~gs~iivTtR~ 285 (873)
+-. ||||||+.. ..+|.. +...+......|..+|+||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 444 899999943 344432 222221111345679999864
No 175
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.48 E-value=0.0049 Score=60.76 Aligned_cols=184 Identities=17% Similarity=0.214 Sum_probs=104.7
Q ss_pred cCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC-cccHHHHHHHHHHHhCCCCccccccCHHHHHHHH
Q 002863 162 EEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-DLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQI 240 (873)
Q Consensus 162 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 240 (873)
.++.+++.++|.-|+|||++.++..... . + +.++-|.+.. ......+...|...+............+.....+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~-~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASL-N--E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc-C--C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 3566799999999999999999555544 1 1 1122244443 3466778888888887632111111222333334
Q ss_pred HHHh-ccCC-eEEEEeccccc--cccccccccC--CCCCCCCcEEEEEccch-------hhhhccc-cccc-eeeccCCh
Q 002863 241 FNIL-SKKK-FVLLLDDMWEL--VDLDQVGLPI--PSRTSVSNKVVFTTREF-------EVCGQME-AHRS-FKVECLRY 305 (873)
Q Consensus 241 ~~~l-~~k~-~LlVlDdv~~~--~~~~~~~~~l--~~~~~~gs~iivTtR~~-------~v~~~~~-~~~~-~~l~~L~~ 305 (873)
.+.. +++| ..++.||..+. ...+.++... ......--+|+..-.-+ .+.+... .... |++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 4433 5677 89999998754 2233222111 11101111233322211 0111111 1223 89999999
Q ss_pred hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHH
Q 002863 306 DDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGR 350 (873)
Q Consensus 306 ~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 350 (873)
++...+++.+........+---.+....|.....|.|.+|..++.
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999988876553222222355678899999999999988764
No 176
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.48 E-value=0.00039 Score=69.32 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=30.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeC
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVS 205 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 205 (873)
-.++|+|..|+||||++..+.... ...|+.+++++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEecC
Confidence 367799999999999999998776 5788888777543
No 177
>PRK08118 topology modulation protein; Reviewed
Probab=97.46 E-value=8.1e-05 Score=71.10 Aligned_cols=35 Identities=34% Similarity=0.620 Sum_probs=28.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEE
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIW 201 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 201 (873)
.|.|+|++|+||||||+.+++...-...+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999987222367887776
No 178
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.45 E-value=0.0017 Score=71.29 Aligned_cols=134 Identities=16% Similarity=0.202 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-cHHHHHHHHHHHhCCCCcc
Q 002863 149 LQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQEIIAKKIGLFNES 227 (873)
Q Consensus 149 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~ 227 (873)
|..-..++++.+..... ++.|+|+-++||||+++.+.... .+. .+++..-+.. +..++
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-------------- 80 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-------------- 80 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH--------------
Confidence 33445555555543333 99999999999999997776655 122 4444332221 11111
Q ss_pred ccccCHHHHHHHHHHHhccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhhh-----c-cccccceeec
Q 002863 228 WKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVCG-----Q-MEAHRSFKVE 301 (873)
Q Consensus 228 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~-----~-~~~~~~~~l~ 301 (873)
.+....+.+.-..++..++||.|....+|+.....+.+. +.. +|++|+-+..... . .+....+++-
T Consensus 81 ------~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~-~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~ 152 (398)
T COG1373 81 ------LDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDR-GNL-DVLITGSSSSLLSKEISESLAGRGKDLELY 152 (398)
T ss_pred ------HHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHcc-ccc-eEEEECCchhhhccchhhhcCCCceeEEEC
Confidence 111111111112277899999999999999888777776 444 8888888765422 1 2345678999
Q ss_pred cCChhhhHHH
Q 002863 302 CLRYDDAWKL 311 (873)
Q Consensus 302 ~L~~~e~~~l 311 (873)
|||-.|-..+
T Consensus 153 PlSF~Efl~~ 162 (398)
T COG1373 153 PLSFREFLKL 162 (398)
T ss_pred CCCHHHHHhh
Confidence 9999887654
No 179
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.44 E-value=0.001 Score=80.77 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=88.2
Q ss_pred cccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccC--CC-CCceEEEEEeCCcccHHHHHHHHHHHh
Q 002863 145 TVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDT--PN-HFDFVIWVVVSRDLQLEKIQEIIAKKI 221 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l 221 (873)
.++||+.+++++++.|......-+.++|++|+|||++|+.++...... .. .....+|.. ++..+. .
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~----a-- 242 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI----A-- 242 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh----h--
Confidence 489999999999999977655666789999999999999998875111 00 012223321 111111 0
Q ss_pred CCCCccccccCHHHHHHHHHHHhc--cCCeEEEEecccccc---------ccccccccCCCCCCCCcEEEEEccchhhhh
Q 002863 222 GLFNESWKNKSMQEKAQQIFNILS--KKKFVLLLDDMWELV---------DLDQVGLPIPSRTSVSNKVVFTTREFEVCG 290 (873)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 290 (873)
+.. ...+.+.....+...+. +++.+|++|+++... +...+..+... ...-++|.+|...+.-.
T Consensus 243 ~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 243 GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTLDEYRK 316 (852)
T ss_pred cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcHHHHHH
Confidence 000 01122333344444442 468999999997432 11122222221 22345665555444311
Q ss_pred c-------cccccceeeccCChhhhHHHHHHHh
Q 002863 291 Q-------MEAHRSFKVECLRYDDAWKLFELKV 316 (873)
Q Consensus 291 ~-------~~~~~~~~l~~L~~~e~~~lf~~~~ 316 (873)
. ......+.+...+.++...++....
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 1123468899999999999988654
No 180
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.004 Score=64.22 Aligned_cols=180 Identities=18% Similarity=0.232 Sum_probs=108.3
Q ss_pred ccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHH
Q 002863 146 VVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEK 212 (873)
Q Consensus 146 ~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 212 (873)
+=|-++.+++|.+...- +..+=|.+||++|.|||-||++|++.. ... |+.+... +
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~At-----FIrvvgS----E 220 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DAT-----FIRVVGS----E 220 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---Cce-----EEEeccH----H
Confidence 45678888888877531 245678899999999999999999986 333 3444332 1
Q ss_pred HHHHHHHHhCCCCccccccCHHHHHHHHHHHhc-cCCeEEEEeccccc----------cc------cccccccCCCCC-C
Q 002863 213 IQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS-KKKFVLLLDDMWEL----------VD------LDQVGLPIPSRT-S 274 (873)
Q Consensus 213 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------~~------~~~~~~~l~~~~-~ 274 (873)
+.++ .+| .-..+.+.+.+.-+ ..+..|.+|.++.. .+ .-++...+...+ .
T Consensus 221 lVqK---YiG---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 221 LVQK---YIG---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred HHHH---Hhc---------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 1111 111 12345555666554 46899999998631 01 112222222211 3
Q ss_pred CCcEEEEEccchhhhhc-----cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch----hHH
Q 002863 275 VSNKVVFTTREFEVCGQ-----MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP----LAL 345 (873)
Q Consensus 275 ~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP----Lai 345 (873)
...|||..|...++..- -.-...|+++.-+.+.-.++|+-++.......+-++ +.+++.|.|.- -|+
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkai 364 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAI 364 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHH
Confidence 45689988887665321 123567888866667777889888877665555565 45566666553 345
Q ss_pred HHHHHHHh
Q 002863 346 ITVGRAMA 353 (873)
Q Consensus 346 ~~~~~~l~ 353 (873)
.+=|++++
T Consensus 365 ctEAGm~A 372 (406)
T COG1222 365 CTEAGMFA 372 (406)
T ss_pred HHHHhHHH
Confidence 55555543
No 181
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.39 E-value=0.00063 Score=77.99 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=38.9
Q ss_pred CcccchhHHHHHHHHHHhcC-----CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLMEE-----HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.++|.++.++++..++... ...++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999998752 33579999999999999999998865
No 182
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.36 E-value=6.9e-05 Score=87.22 Aligned_cols=100 Identities=24% Similarity=0.248 Sum_probs=54.8
Q ss_pred CcccEEEecCCcc--ccCCCCchhhhcCCcceEEecCCCCC-----CccccCcccCCEEecCCCCCCccchhhhcCCCCc
Q 002863 526 PRLLTLFLNSNYF--KNDKVNYHFFKSMASLRVLKLSHSDL-----PCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLK 598 (873)
Q Consensus 526 ~~L~~L~l~~n~l--~~~~~~~~~~~~l~~Lr~L~L~~n~l-----p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~ 598 (873)
.+|+.|++++... .+.+ ...-..+|.|+.|.+++-.+ ..-..++++|..||+|++++..+ .++++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~--~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWP--KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHH--HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 4566677766542 1222 33344567777777666532 22234566666667776666666 5666666666
Q ss_pred Eeeccccccccc-cChhhhCCCcccceEeccc
Q 002863 599 CLNLEYTFRLSR-ISPQVISNLKMLRVLRMFE 629 (873)
Q Consensus 599 ~L~L~~~~~l~~-l~~~~i~~l~~L~~L~l~~ 629 (873)
.|.+.+= .+.. ..-..+-+|++|++||++.
T Consensus 199 ~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 199 VLSMRNL-EFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred HHhccCC-CCCchhhHHHHhcccCCCeeeccc
Confidence 6666443 2221 1111245666666666664
No 183
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.35 E-value=0.00021 Score=67.20 Aligned_cols=76 Identities=24% Similarity=0.347 Sum_probs=38.3
Q ss_pred cceEEecCCCCC--CccccCcccCCEEecCCCCCCccchhhh-cCCCCcEeeccccccccccCh-hhhCCCcccceEecc
Q 002863 553 SLRVLKLSHSDL--PCEISNLVSLQYLDLSNSIPDRLPLGLK-YLVNLKCLNLEYTFRLSRISP-QVISNLKMLRVLRMF 628 (873)
Q Consensus 553 ~Lr~L~L~~n~l--p~~i~~L~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~~l~~l~~-~~i~~l~~L~~L~l~ 628 (873)
..-.+||++|.+ ...+..++.|.+|.|++|.|..+-..+. .+++|+.|.|.+| ++..+.. .-+..|+.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 445556666633 2344555556666666666655544443 2345666666555 3333211 014455555555555
Q ss_pred c
Q 002863 629 E 629 (873)
Q Consensus 629 ~ 629 (873)
+
T Consensus 122 ~ 122 (233)
T KOG1644|consen 122 G 122 (233)
T ss_pred C
Confidence 4
No 184
>CHL00176 ftsH cell division protein; Validated
Probab=97.30 E-value=0.0047 Score=71.58 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=94.2
Q ss_pred CcccchhHHHHHHHHH---HhcC---------CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRC---LMEE---------HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~---L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.++.++++.+. +... ..+-|.++|++|+|||++|+++++.. ... |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----
Confidence 4578887766665444 3321 23468899999999999999998875 222 2333211
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc------------c----cccccccCCCC-CC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV------------D----LDQVGLPIPSR-TS 274 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~~-~~ 274 (873)
++.... .+ .........+.....+.+.+|++||++... . +..+...+... ..
T Consensus 251 ~f~~~~---~g--------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVEMF---VG--------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHHHh---hh--------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 111100 01 011122222333445688999999995321 1 11121111111 13
Q ss_pred CCcEEEEEccchhhhhc-c----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCC
Q 002863 275 VSNKVVFTTREFEVCGQ-M----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGG 340 (873)
Q Consensus 275 ~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g 340 (873)
.+..||.||...+.... + .....+.++..+.++-.++++.++...... .......+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCC
Confidence 45567777766443221 1 124578888899999999999887653211 12235677888877
No 185
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.30 E-value=0.012 Score=63.09 Aligned_cols=199 Identities=15% Similarity=0.181 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHH-HHHHhhhccCCCCCceEEEEEeCCc---ccHHHHHHHHHHHhCCC
Q 002863 149 LQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLL-TQINNRFFDTPNHFDFVIWVVVSRD---LQLEKIQEIIAKKIGLF 224 (873)
Q Consensus 149 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~~l~~~ 224 (873)
|.+..++|..||.+..-..|.|.||-|+||+.|+ .++.++. + .+..+.|.+- .+-..+.+.++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-K------NVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-C------CEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999887789999999999999999 7766654 1 2666665542 23445666666666542
Q ss_pred Cc---------------------cc-cccCHHHHHHHH--------HH-------------------Hhc---cCCeEEE
Q 002863 225 NE---------------------SW-KNKSMQEKAQQI--------FN-------------------ILS---KKKFVLL 252 (873)
Q Consensus 225 ~~---------------------~~-~~~~~~~~~~~l--------~~-------------------~l~---~k~~LlV 252 (873)
+- +. -..+.+.....+ +. +|+ .++-+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 10 00 011222221111 11 111 2367999
Q ss_pred Eecccccc-----------ccccccccCCCCCCCCcEEEEEccchhhhhc----c--ccccceeeccCChhhhHHHHHHH
Q 002863 253 LDDMWELV-----------DLDQVGLPIPSRTSVSNKVVFTTREFEVCGQ----M--EAHRSFKVECLRYDDAWKLFELK 315 (873)
Q Consensus 253 lDdv~~~~-----------~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~----~--~~~~~~~l~~L~~~e~~~lf~~~ 315 (873)
+|+.-... +|... +.. .+-.+||++|-+...... + ...+.+.|.-.+++.|..+...+
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~---Lv~--~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS---LVQ--NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH---HHh--cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 99985432 24332 111 334588988887655432 2 23456889999999999999988
Q ss_pred hcCCCCC------------CC-----CChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChH
Q 002863 316 VGADTLD------------SH-----PDIPELAETLAKDCGGLPLALITVGRAMASRKTPR 359 (873)
Q Consensus 316 ~~~~~~~------------~~-----~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~ 359 (873)
....... .. .....-....++..||=-.-+..+++.++...++.
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 7543100 00 12334456678889999999999999998865554
No 186
>PRK07261 topology modulation protein; Provisional
Probab=97.29 E-value=0.00062 Score=65.39 Aligned_cols=66 Identities=21% Similarity=0.425 Sum_probs=41.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhcc
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSK 246 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 246 (873)
.|.|+|++|+||||||+.+.....-..-+.|...|-.. +...+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 48899999999999999998765111224455555211 1223345556666666766
Q ss_pred CCeEEEEeccc
Q 002863 247 KKFVLLLDDMW 257 (873)
Q Consensus 247 k~~LlVlDdv~ 257 (873)
.+ .|+|+..
T Consensus 59 ~~--wIidg~~ 67 (171)
T PRK07261 59 HD--WIIDGNY 67 (171)
T ss_pred CC--EEEcCcc
Confidence 66 6778763
No 187
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.26 E-value=0.00065 Score=65.14 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=65.5
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGL 223 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 223 (873)
.++||-++.++.+.-.-.+++.+-+.|.||+|+||||-+..+++.. -...+-+.+.-...|+...+.-+...|-.....
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~ 105 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERGIDVVRNKIKMFAQK 105 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCccccccHHHHHHHHHHHHh
Confidence 3589999999998888788899999999999999999998888876 233344455555556555444443333221110
Q ss_pred CCccccccCHHHHHHHHHHHh-ccCCeEEEEeccccc
Q 002863 224 FNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWEL 259 (873)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~ 259 (873)
.. .+ .++.-.+|||.+++.
T Consensus 106 kv-----------------~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 106 KV-----------------TLPPGRHKIIILDEADSM 125 (333)
T ss_pred hc-----------------cCCCCceeEEEeeccchh
Confidence 00 01 245568899998764
No 188
>PRK12377 putative replication protein; Provisional
Probab=97.25 E-value=0.00079 Score=68.26 Aligned_cols=75 Identities=24% Similarity=0.235 Sum_probs=45.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI 243 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (873)
+...+.++|.+|+|||+||.++++... ...-.++++++ .+++..+-..... ...... +.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~------~~~~~~----~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDN------GQSGEK----FLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhc------cchHHH----HHHH
Confidence 345788999999999999999999872 22233566544 3444444433321 111111 2222
Q ss_pred hccCCeEEEEecccc
Q 002863 244 LSKKKFVLLLDDMWE 258 (873)
Q Consensus 244 l~~k~~LlVlDdv~~ 258 (873)
+ .+--||||||+..
T Consensus 161 l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 161 L-CKVDLLVLDEIGI 174 (248)
T ss_pred h-cCCCEEEEcCCCC
Confidence 2 3566999999943
No 189
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.22 E-value=0.0043 Score=58.91 Aligned_cols=137 Identities=12% Similarity=0.143 Sum_probs=72.7
Q ss_pred chhHHHHHHHHHHhcCCcE-EEEEEeCCCCcHHHHHHHHHhhhccCC-----------------CCCceEEEEEeCCc--
Q 002863 148 GLQLTFDRVWRCLMEEHVG-IVGLYGMGGVGKTTLLTQINNRFFDTP-----------------NHFDFVIWVVVSRD-- 207 (873)
Q Consensus 148 gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------~~f~~~~wv~~s~~-- 207 (873)
|-++..+.+.+.+..++.+ .+.++|+.|+||+|+|..+.+...-.. ....-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 4566777788888777655 689999999999999998877651111 11222333332221
Q ss_pred -ccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEcc
Q 002863 208 -LQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTR 284 (873)
Q Consensus 208 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR 284 (873)
...+++. .+.+.+.... ..++.=++|+||++.. .....+...+..- ..++++|++|+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEep-p~~~~fiL~t~ 140 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEP-PENTYFILITN 140 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHST-TTTEEEEEEES
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCC-CCCEEEEEEEC
Confidence 2232222 3333332211 1245668999999764 3344444444333 56778888888
Q ss_pred chh-hh-hccccccceeeccCC
Q 002863 285 EFE-VC-GQMEAHRSFKVECLR 304 (873)
Q Consensus 285 ~~~-v~-~~~~~~~~~~l~~L~ 304 (873)
+.+ +. ........+.+.++|
T Consensus 141 ~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE----
T ss_pred ChHHChHHHHhhceEEecCCCC
Confidence 754 22 222344566666654
No 190
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.0058 Score=65.51 Aligned_cols=144 Identities=8% Similarity=0.096 Sum_probs=83.9
Q ss_pred cccc-hhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCC--------------------CCceEEEE
Q 002863 145 TVVG-LQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPN--------------------HFDFVIWV 202 (873)
Q Consensus 145 ~~vg-r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------------------~f~~~~wv 202 (873)
.++| -+..++.+...+..+++ ....++|+.|+||||+|+.+.+... -.. |.|.....
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~-c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLF-CLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 4567 66677888888876654 5678999999999999999877641 111 11211111
Q ss_pred EeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-----ccCCeEEEEecccccc--ccccccccCCCCCCC
Q 002863 203 VVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV--DLDQVGLPIPSRTSV 275 (873)
Q Consensus 203 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~ 275 (873)
.-+... ..++ +..+.+.+ .+.+=++|+|++.... ....+...+..- ..
T Consensus 85 ~~~~~i-----------------------~id~-ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP-p~ 139 (329)
T PRK08058 85 PDGQSI-----------------------KKDQ-IRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP-SG 139 (329)
T ss_pred cccccC-----------------------CHHH-HHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC-CC
Confidence 001111 1111 12222222 3455679999986542 233344444333 45
Q ss_pred CcEEEEEccch-hhhh-ccccccceeeccCChhhhHHHHHH
Q 002863 276 SNKVVFTTREF-EVCG-QMEAHRSFKVECLRYDDAWKLFEL 314 (873)
Q Consensus 276 gs~iivTtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~lf~~ 314 (873)
++.+|++|.+. .+.. .......+++.++++++..+.+.+
T Consensus 140 ~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 140 GTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 66777777653 3322 223467899999999999888865
No 191
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.21 E-value=0.0021 Score=68.10 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=63.9
Q ss_pred HHHHHHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCce-EEEEEeCCc-ccHHHHHHHHHHHhCCCCcccc
Q 002863 153 FDRVWRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDF-VIWVVVSRD-LQLEKIQEIIAKKIGLFNESWK 229 (873)
Q Consensus 153 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~ 229 (873)
..++++.+.. +...-+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+. ..+.++.+.+...+........
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3456776653 3445678999999999999999988762 223343 467666654 4678888888876664321101
Q ss_pred ccC---HHHHHHHHHHHh--ccCCeEEEEeccc
Q 002863 230 NKS---MQEKAQQIFNIL--SKKKFVLLLDDMW 257 (873)
Q Consensus 230 ~~~---~~~~~~~l~~~l--~~k~~LlVlDdv~ 257 (873)
... .......+.+++ +|++.+||+|++.
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 111 111112222233 5899999999984
No 192
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.21 E-value=5.5e-05 Score=66.30 Aligned_cols=84 Identities=27% Similarity=0.377 Sum_probs=74.6
Q ss_pred ceEEEEeecccccccccc--CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC---CCccccCcccCCEEec
Q 002863 505 DVTRMSLMDNKIKRLTVS--PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD---LPCEISNLVSLQYLDL 579 (873)
Q Consensus 505 ~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~---lp~~i~~L~~L~~L~L 579 (873)
.+..+++++|.++.+|.. ..++.+++|++.+|.+..+| .. +..++.||.|+++.|. .|..|..|.+|-+|+.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvP--eE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVP--EE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhch--HH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 677889999999988765 66789999999999999998 55 8999999999999994 4888888999999999
Q ss_pred CCCCCCccchhh
Q 002863 580 SNSIPDRLPLGL 591 (873)
Q Consensus 580 ~~~~i~~lp~~i 591 (873)
.+|.+.++|..+
T Consensus 131 ~~na~~eid~dl 142 (177)
T KOG4579|consen 131 PENARAEIDVDL 142 (177)
T ss_pred CCCccccCcHHH
Confidence 999999999774
No 193
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.009 Score=63.01 Aligned_cols=173 Identities=10% Similarity=0.054 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCc----------------eEEEEEeCCcccHHHH
Q 002863 151 LTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD----------------FVIWVVVSRDLQLEKI 213 (873)
Q Consensus 151 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~----------------~~~wv~~s~~~~~~~~ 213 (873)
...+.+...+..+.+ ..+.++|+.|+||+|+|..++.... -..... -..|+......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll-C~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~----- 84 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL-ASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR----- 84 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh-CCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc-----
Confidence 456677777766654 4688999999999999998877641 111000 01111100000
Q ss_pred HHHHHHHhCCCCccccccCHHHHHHHHHHHh-----ccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccch
Q 002863 214 QEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTREF 286 (873)
Q Consensus 214 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~ 286 (873)
...+....-.-+.++.+.+.+ .+++-++|+|+++... .-..+...+..- ..++.+|++|.+.
T Consensus 85 ----------~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~~~fiL~~~~~ 153 (319)
T PRK08769 85 ----------TGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP-SPGRYLWLISAQP 153 (319)
T ss_pred ----------ccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC-CCCCeEEEEECCh
Confidence 000000000112223333333 2456699999997542 222222222222 4456677666653
Q ss_pred -hhh-hccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002863 287 -EVC-GQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVG 349 (873)
Q Consensus 287 -~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 349 (873)
.+. ...+....+.+.+++.+++.+.+.+. + . + +..++.++..++|.|+.+..+.
T Consensus 154 ~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~-~----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 154 ARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G-V----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C-C----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 333 22344677899999999998888753 1 1 1 2236678999999998765543
No 194
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0089 Score=64.48 Aligned_cols=157 Identities=21% Similarity=0.191 Sum_probs=95.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH-
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN- 242 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~- 242 (873)
...-+.+.|++|+|||+||..++... .|+.+--++..+. ...++......+..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~m---------------------iG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPEDM---------------------IGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHHc---------------------cCccHHHHHHHHHHH
Confidence 35567789999999999999987753 6765544322111 11222333333333
Q ss_pred ---HhccCCeEEEEeccccccccccccccCCC------------CCCCCcE--EEEEccchhhhhccc----cccceeec
Q 002863 243 ---ILSKKKFVLLLDDMWELVDLDQVGLPIPS------------RTSVSNK--VVFTTREFEVCGQME----AHRSFKVE 301 (873)
Q Consensus 243 ---~l~~k~~LlVlDdv~~~~~~~~~~~~l~~------------~~~~gs~--iivTtR~~~v~~~~~----~~~~~~l~ 301 (873)
..+..--.||+||+....||-.+++.|.. ....|-| |+-||....|...|+ ....|.++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 33456679999999888888877654421 1234445 445777778877775 24578899
Q ss_pred cCCh-hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHH
Q 002863 302 CLRY-DDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAM 352 (873)
Q Consensus 302 ~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 352 (873)
.++. ++..+.++..-- -.+.+.+.++.+.+.+| +-..|+-+-.++
T Consensus 671 nl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred ccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 8887 777777765421 12344556677777766 333444444444
No 195
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.21 E-value=0.00084 Score=61.52 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEeCCCCcHHHHHHHHHhhh
Q 002863 168 VGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 168 i~I~G~gGiGKTtLa~~v~~~~ 189 (873)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5689999999999999999987
No 196
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.17 E-value=0.01 Score=66.47 Aligned_cols=200 Identities=16% Similarity=0.119 Sum_probs=115.1
Q ss_pred CCcccchhHHHHHHHHHHhc-----CCcEEEEEEeCCCCcHHHHHHHHHhhhc-----cCCCCCceEEEEEeCCcccHHH
Q 002863 143 PPTVVGLQLTFDRVWRCLME-----EHVGIVGLYGMGGVGKTTLLTQINNRFF-----DTPNHFDFVIWVVVSRDLQLEK 212 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~~~~f~~~~wv~~s~~~~~~~ 212 (873)
+..+-+|+.+..+|-.++.. +..+.+-|.|-+|+|||..+..|.+... .....|+ .+.|..-.-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 44567899999999888753 2345899999999999999999998542 1123444 33455445557889
Q ss_pred HHHHHHHHhCCCCccccccCHHHHHHHHHHHhc-----cCCeEEEEeccccccc-cccc-cccCCCCCCCCcEEEEEccc
Q 002863 213 IQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS-----KKKFVLLLDDMWELVD-LDQV-GLPIPSRTSVSNKVVFTTRE 285 (873)
Q Consensus 213 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~-~~~~-~~~l~~~~~~gs~iivTtR~ 285 (873)
+...|.+++.... .........+..+.. .+..+|++|+++.... -+++ -..|.+-...+||++|-+
T Consensus 474 ~Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~-- 546 (767)
T KOG1514|consen 474 IYEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA-- 546 (767)
T ss_pred HHHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE--
Confidence 9999999987643 233344445555443 4578888998854211 0111 111222125677766654
Q ss_pred hhhhhccc--------------cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHH
Q 002863 286 FEVCGQME--------------AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRA 351 (873)
Q Consensus 286 ~~v~~~~~--------------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 351 (873)
||..|. .-..+..++.+.++--++...+..+...-...-.+=++++|+.--|-.-.|+.+.-++
T Consensus 547 --IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 547 --IANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred --ecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 222221 1234666777777766666655543321112222334455555555555555554443
Q ss_pred H
Q 002863 352 M 352 (873)
Q Consensus 352 l 352 (873)
.
T Consensus 625 ~ 625 (767)
T KOG1514|consen 625 A 625 (767)
T ss_pred H
Confidence 3
No 197
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.13 E-value=0.0013 Score=70.50 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=7.4
Q ss_pred CCCcEEeeccCcc
Q 002863 752 PNLKHLEVQNCPY 764 (873)
Q Consensus 752 ~~L~~L~L~~~~~ 764 (873)
++|++|++++|..
T Consensus 156 sSLk~L~Is~c~~ 168 (426)
T PRK15386 156 PSLKTLSLTGCSN 168 (426)
T ss_pred CcccEEEecCCCc
Confidence 4566666665553
No 198
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.09 E-value=0.0027 Score=62.19 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=55.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc-ccHHHHHHHHHHHhCCCCccc-cccCHHHHHHHHHH
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQEIIAKKIGLFNESW-KNKSMQEKAQQIFN 242 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 242 (873)
++||.++|+.|+||||.+.+++... ..+ -..+..++.... ....+-++..++.++++.... ...+..+...+..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3689999999999999988888776 222 335667775432 245667888889888753211 22344455544444
Q ss_pred HhccCC-eEEEEeccc
Q 002863 243 ILSKKK-FVLLLDDMW 257 (873)
Q Consensus 243 ~l~~k~-~LlVlDdv~ 257 (873)
..+.++ =++++|=..
T Consensus 78 ~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHTTSSEEEEEE-S
T ss_pred HHhhcCCCEEEEecCC
Confidence 444443 477778663
No 199
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.012 Score=64.84 Aligned_cols=180 Identities=17% Similarity=0.177 Sum_probs=96.8
Q ss_pred cccchhHHHHHHHHHHhc------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHH
Q 002863 145 TVVGLQLTFDRVWRCLME------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEK 212 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 212 (873)
++=|.+..+.++.+.+.. ...+=|.++|++|+|||.||+++++.. . -. ++.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~--vP-----f~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-G--VP-----FLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-C--Cc-----eEeecch-----
Confidence 456788888888776642 134567899999999999999999987 2 22 3344332
Q ss_pred HHHHHHHHhCCCCccccccCHHHHHHHHH-HHhccCCeEEEEeccccc---ccc----------ccccccCC-----CCC
Q 002863 213 IQEIIAKKIGLFNESWKNKSMQEKAQQIF-NILSKKKFVLLLDDMWEL---VDL----------DQVGLPIP-----SRT 273 (873)
Q Consensus 213 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~---~~~----------~~~~~~l~-----~~~ 273 (873)
+|+.+. ...++ +.++.+. +.-..-++++++|+++-. .+| .++...+. ...
T Consensus 258 ---eivSGv-------SGESE-kkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESE-KKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred ---hhhccc-------CcccH-HHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 122111 12233 3333333 344567999999999642 111 11211111 111
Q ss_pred CCCcEEEEEccch-hhhh---ccc-cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCc----hhH
Q 002863 274 SVSNKVVFTTREF-EVCG---QME-AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGL----PLA 344 (873)
Q Consensus 274 ~~gs~iivTtR~~-~v~~---~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl----PLa 344 (873)
+.+.-||-+|..+ .+-. ..+ ..+.|.+.--++..-.++++..+.+......-++. +|++..-|. -.|
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~----qlA~lTPGfVGADL~A 402 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFK----QLAKLTPGFVGADLMA 402 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHH----HHHhcCCCccchhHHH
Confidence 2333333344333 3311 112 34567787777777777888777655544444444 444444443 344
Q ss_pred HHHHHHHH
Q 002863 345 LITVGRAM 352 (873)
Q Consensus 345 i~~~~~~l 352 (873)
+...|+..
T Consensus 403 L~~~Aa~v 410 (802)
T KOG0733|consen 403 LCREAAFV 410 (802)
T ss_pred HHHHHHHH
Confidence 44444433
No 200
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0039 Score=70.08 Aligned_cols=156 Identities=19% Similarity=0.208 Sum_probs=90.5
Q ss_pred ccchhHHHHHHHHHHhc------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHH
Q 002863 146 VVGLQLTFDRVWRCLME------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 146 ~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 219 (873)
=+|.++.+++|++.|.- -+.+++.+||++|+|||.|++.++... ...| +-+.++.-.|..+|...
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGH--- 395 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGH--- 395 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhccc---
Confidence 38999999999999852 245799999999999999999999986 3333 23344544444443211
Q ss_pred HhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc-----c----ccccccc-----CCC----CCCCCcEEE-
Q 002863 220 KIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV-----D----LDQVGLP-----IPS----RTSVSNKVV- 280 (873)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~----~~~~~~~-----l~~----~~~~gs~ii- 280 (873)
...+...-+...++.+. ..+.+.-+++||.++... | +-++..| |.+ ..-.=|+|+
T Consensus 396 -----RRTYIGamPGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 396 -----RRTYIGAMPGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred -----cccccccCChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 11111112222333222 234567789999986421 1 1111111 111 111234554
Q ss_pred EEccch-h-h-hhccccccceeeccCChhhhHHHHHHHh
Q 002863 281 FTTREF-E-V-CGQMEAHRSFKVECLRYDDAWKLFELKV 316 (873)
Q Consensus 281 vTtR~~-~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 316 (873)
|||-+. + + +..++.-.+|++.+.+++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 444332 2 1 2334456789999999999888887765
No 201
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.06 E-value=0.00031 Score=68.39 Aligned_cols=129 Identities=15% Similarity=0.152 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC----c--ccHHHH-------H
Q 002863 148 GLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR----D--LQLEKI-------Q 214 (873)
Q Consensus 148 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~----~--~~~~~~-------~ 214 (873)
.+..+....++.|. +..++.+.|++|.|||.||.+.+-+. -..+.++.++++.-.- . +-+-.+ .
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 45566677777777 45699999999999999998887665 2348888888775221 1 111111 1
Q ss_pred HHHHHHhCCCCccccccCHHHHHHHH------HHHhccC---CeEEEEeccccc--cccccccccCCCCCCCCcEEEEEc
Q 002863 215 EIIAKKIGLFNESWKNKSMQEKAQQI------FNILSKK---KFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTT 283 (873)
Q Consensus 215 ~~i~~~l~~~~~~~~~~~~~~~~~~l------~~~l~~k---~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTt 283 (873)
.-+...+..-. .....+.....= ..+++|+ ..+||+|++.+. .++..+. ... +.|||||++-
T Consensus 81 ~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~il---TR~-g~~skii~~G 153 (205)
T PF02562_consen 81 RPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMIL---TRI-GEGSKIIITG 153 (205)
T ss_dssp HHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHH---TTB--TT-EEEEEE
T ss_pred HHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHH---ccc-CCCcEEEEec
Confidence 11222221100 111122221100 0345665 459999999764 3444443 333 7789999987
Q ss_pred cch
Q 002863 284 REF 286 (873)
Q Consensus 284 R~~ 286 (873)
-..
T Consensus 154 D~~ 156 (205)
T PF02562_consen 154 DPS 156 (205)
T ss_dssp ---
T ss_pred Cce
Confidence 543
No 202
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.05 E-value=0.0048 Score=74.01 Aligned_cols=172 Identities=15% Similarity=0.155 Sum_probs=91.3
Q ss_pred cccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 145 TVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++.|.+..++++.+.+.- ...+-|.++|++|+||||||+.+++.. ...| +.++..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~-----i~i~~~---- 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF-----ISINGP---- 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE-----EEEecH----
Confidence 478999998888777631 124568899999999999999999876 2222 222211
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccc-------------cccccccCCCCCCCCcE
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD-------------LDQVGLPIPSRTSVSNK 278 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~gs~ 278 (873)
++.. .. ...........+.......+.+|++|+++.... ...+...+......+..
T Consensus 247 ~i~~----~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EIMS----KY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HHhc----cc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 1110 00 011112222222233345678999999854210 11122222111122333
Q ss_pred EEE-Eccchh-hhhcc----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh
Q 002863 279 VVF-TTREFE-VCGQM----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPL 343 (873)
Q Consensus 279 iiv-TtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 343 (873)
++| ||...+ +...+ .....+.+...+.++-.++++..........+. ....+++.+.|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~----~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDV----DLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcccc----CHHHHHHhCCCCCH
Confidence 444 554332 21111 123457788888888888888665433211111 24678888888643
No 203
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.023 Score=60.08 Aligned_cols=174 Identities=9% Similarity=0.058 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCC-cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc---
Q 002863 152 TFDRVWRCLMEEH-VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES--- 227 (873)
Q Consensus 152 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--- 227 (873)
..+.+.+.+..+. ...+.+.|+.|+||+++|+.++.... -....... .+... ...+.+.. |.+++-
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll-C~~~~~~~---~Cg~C----~sC~~~~~--g~HPD~~~i 79 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM-CQTPQGDQ---PCGQC----HSCHLFQA--GNHPDFHIL 79 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc-CCCCCCCC---CCCCC----HHHHHHhc--CCCCCEEEE
Confidence 4566777776655 45778999999999999999877651 11100000 00000 01111110 000000
Q ss_pred ----ccccCHHHHHHHHHHHh-----ccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccch-hhh-hcccc
Q 002863 228 ----WKNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-EVC-GQMEA 294 (873)
Q Consensus 228 ----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~-~~~~~ 294 (873)
..... -+.++.+.+.+ .+++=++|+|+++... ....+...+..- ..++.+|++|.+. .+. +..+.
T Consensus 80 ~p~~~~~I~-id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP-p~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 80 EPIDNKDIG-VDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEP-RPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred ccccCCCCC-HHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCC-CCCeEEEEEECChHhCchHHHhh
Confidence 00011 12222333333 3566688899997643 233333333332 4455666666654 443 22344
Q ss_pred ccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHH
Q 002863 295 HRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLAL 345 (873)
Q Consensus 295 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 345 (873)
...+.+.++++++..+.+.+..... ...+...++.++|.|+.+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 6789999999999999888764211 122566788899999644
No 204
>PRK08181 transposase; Validated
Probab=96.98 E-value=0.0011 Score=68.07 Aligned_cols=105 Identities=18% Similarity=0.151 Sum_probs=56.3
Q ss_pred HHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHH
Q 002863 158 RCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKA 237 (873)
Q Consensus 158 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 237 (873)
+|+. ...-+.++|++|+|||.||.++.+... ... ..+.|+. ..++...+..... ..+.....
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~--~~g-~~v~f~~------~~~L~~~l~~a~~-------~~~~~~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI--ENG-WRVLFTR------TTDLVQKLQVARR-------ELQLESAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH--HcC-Cceeeee------HHHHHHHHHHHHh-------CCcHHHHH
Confidence 4553 234588999999999999999998762 122 2345553 3455555543321 11222222
Q ss_pred HHHHHHhccCCeEEEEeccccc--ccc-c-cccccCCCCCCCCcEEEEEccch
Q 002863 238 QQIFNILSKKKFVLLLDDMWEL--VDL-D-QVGLPIPSRTSVSNKVVFTTREF 286 (873)
Q Consensus 238 ~~l~~~l~~k~~LlVlDdv~~~--~~~-~-~~~~~l~~~~~~gs~iivTtR~~ 286 (873)
+.+. +.=||||||+... .++ . .+...+... ..+..+||||...
T Consensus 163 ----~~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R-~~~~s~IiTSN~~ 209 (269)
T PRK08181 163 ----AKLD-KFDLLILDDLAYVTKDQAETSVLFELISAR-YERRSILITANQP 209 (269)
T ss_pred ----HHHh-cCCEEEEeccccccCCHHHHHHHHHHHHHH-HhCCCEEEEcCCC
Confidence 2222 4459999999643 122 1 122222211 1223688888754
No 205
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.92 E-value=0.01 Score=71.35 Aligned_cols=170 Identities=18% Similarity=0.207 Sum_probs=94.2
Q ss_pred cccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 145 TVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++.|.+..++++.+.+.- ...+-|.++|++|+|||++|+++++.. ...| +.+.. .
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~----~ 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRG----P 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----H
Confidence 467888777777665431 123457889999999999999999986 2222 22221 1
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEeccccccc--------------cccccccCCCC-CCC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELVD--------------LDQVGLPIPSR-TSV 275 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~--------------~~~~~~~l~~~-~~~ 275 (873)
+++ ... ...+ +.....+.... ...+.+|++|+++.... ...+...+... ...
T Consensus 522 ~l~----~~~-------vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 EIL----SKW-------VGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred HHh----hcc-------cCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 111 110 1111 22233333333 45689999999853210 01111112110 023
Q ss_pred CcEEEEEccchhhhhc-c----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch
Q 002863 276 SNKVVFTTREFEVCGQ-M----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 276 gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
+.-||.||...+.... + .....+.++..+.++-.++|+.+..........+ ...+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 4456667766543221 1 2346788899999999999987765443222223 356677787753
No 206
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.0047 Score=68.54 Aligned_cols=187 Identities=13% Similarity=0.124 Sum_probs=106.9
Q ss_pred CcccchhHHHHHHHHHHhcCC-cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEH-VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
++++|-+.....|...+..+. .......|+-|+||||+|+-++... . +.+ + ....+++.-...+.|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal-N-C~~-----~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL-N-CEN-----G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh-c-CCC-----C-CCCCcchhhhhhHhhhcCCc
Confidence 357999999999999988764 3466778999999999999887764 1 111 0 01111111111222222100
Q ss_pred CCCccc--cccCHHHHHHHHHHHh-----ccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEccch-hh-hhc
Q 002863 223 LFNESW--KNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTREF-EV-CGQ 291 (873)
Q Consensus 223 ~~~~~~--~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v-~~~ 291 (873)
+..-.. -..+.-+.++.|.+.. +++-=+.|+|+|+-. ..|..+...+..- ....+.|+.|.+. .+ ...
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP-P~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP-PSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC-ccCeEEEEecCCcCcCchhh
Confidence 000000 0111122233333333 345558999999753 4455554444333 3345666655554 33 233
Q ss_pred cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch
Q 002863 292 MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 292 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
....+.|.++.++.++-...+...+.......+ ++....|++..+|..
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSL 214 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCCh
Confidence 456788999999999999999888876553322 345666777777744
No 207
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.90 E-value=0.0083 Score=67.20 Aligned_cols=172 Identities=15% Similarity=0.139 Sum_probs=90.0
Q ss_pred CcccchhHHHHHHHHHH---hc-------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHH
Q 002863 144 PTVVGLQLTFDRVWRCL---ME-------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKI 213 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L---~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 213 (873)
+++.|.+..++.+.+.. .. ...+-|.++|++|+|||.+|+++++.. ...| +-+.++ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hh
Confidence 35677776666554422 11 234568899999999999999999986 2222 112211 11
Q ss_pred HHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEeccccccc----c----------ccccccCCCCCCCCcE
Q 002863 214 QEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELVD----L----------DQVGLPIPSRTSVSNK 278 (873)
Q Consensus 214 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~----~----------~~~~~~l~~~~~~gs~ 278 (873)
.. . +...+ +.....+.+.. ...+++|++|+++.... . ..+...+... ..+.-
T Consensus 296 ~~----~-------~vGes-e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-~~~V~ 362 (489)
T CHL00195 296 FG----G-------IVGES-ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-KSPVF 362 (489)
T ss_pred cc----c-------ccChH-HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-CCceE
Confidence 10 0 01111 11222222222 35789999999963210 0 0011111111 23344
Q ss_pred EEEEccchhh-----hhccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch
Q 002863 279 VVFTTREFEV-----CGQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 279 iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
||.||.+.+- .+.......+.++.-+.++-.++|+.+..........+ .-...+++.+.|.-
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~--~dl~~La~~T~GfS 429 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKK--YDIKKLSKLSNKFS 429 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccc--cCHHHHHhhcCCCC
Confidence 6667765432 11112345688888899999999998875533111111 11456667776643
No 208
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.03 Score=59.02 Aligned_cols=174 Identities=10% Similarity=0.061 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCC-cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc--
Q 002863 151 LTFDRVWRCLMEEH-VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES-- 227 (873)
Q Consensus 151 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-- 227 (873)
...+++.+.+..+. ...+.+.|+.|+||+++|+.+..... +..-.. -.++.. ..-+.+.. +.+++-
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll--C~~~~~---~~Cg~C----~sC~~~~~--g~HPD~~~ 78 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL--CQNYQS---EACGFC----HSCELMQS--GNHPDLHV 78 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc--CCCCCC---CCCCCC----HHHHHHHc--CCCCCEEE
Confidence 34566666666555 45788999999999999998877541 110000 001100 00000000 100000
Q ss_pred ------ccccCHHHHHHHHHHHh-----ccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccch-hhh-hcc
Q 002863 228 ------WKNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-EVC-GQM 292 (873)
Q Consensus 228 ------~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~-~~~ 292 (873)
......++ ++.+.+.+ .+++=++|+|++.... ....+...+..- ..++.+|++|.+. .+. +..
T Consensus 79 i~p~~~~~~I~vdq-iR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 79 IKPEKEGKSITVEQ-IRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEP-APNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred EecCcCCCcCCHHH-HHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCC-CCCeEEEEEECChhhChHHHH
Confidence 00011122 22333333 2445688999997542 333333333332 4456666665554 443 333
Q ss_pred ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002863 293 EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITV 348 (873)
Q Consensus 293 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 348 (873)
+....+.+.+++++++.+.+.... . . .+..+++.++|.|+.+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~---~----~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQG---I----T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcC---C----c----hHHHHHHHcCCCHHHHHHH
Confidence 456789999999999998886531 1 1 1456789999999977654
No 209
>PRK06526 transposase; Provisional
Probab=96.86 E-value=0.00098 Score=68.12 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..-+.|+|++|+|||+||..+....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 3468899999999999999998876
No 210
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.86 E-value=0.012 Score=57.65 Aligned_cols=170 Identities=14% Similarity=0.233 Sum_probs=98.4
Q ss_pred CcccchhHHHHH---HHHHHhcC------CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHH
Q 002863 144 PTVVGLQLTFDR---VWRCLMEE------HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQ 214 (873)
Q Consensus 144 ~~~vgr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 214 (873)
++++|.++.+.+ |++.|.+. ..+-|..+|++|.|||-+|+++++.. +-.| +.+. ..++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vk----at~l- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVK----ATEL- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEec----hHHH-
Confidence 457898876654 56666542 57789999999999999999999986 2222 1121 1111
Q ss_pred HHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEeccccc----------cccccccccC----CC-CCCCCcE
Q 002863 215 EIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWEL----------VDLDQVGLPI----PS-RTSVSNK 278 (873)
Q Consensus 215 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~~~~~l----~~-~~~~gs~ 278 (873)
|-+-.| +....+.++.++. +.-++++.+|.++.. .|..++..++ .. ....|..
T Consensus 188 --iGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 188 --IGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred --HHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 111111 2233444444444 346899999988531 1222222211 11 1135656
Q ss_pred EEEEccchhhhhcc---ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCc
Q 002863 279 VVFTTREFEVCGQM---EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGL 341 (873)
Q Consensus 279 iivTtR~~~v~~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 341 (873)
.|-.|.+.+..... .....|+...-+++|-.+++...+..-....... .+.++++.+|+
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 66666666553321 1234577777788999999998875543222222 46667777765
No 211
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.84 E-value=0.00066 Score=66.93 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=27.6
Q ss_pred ceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC
Q 002863 505 DVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS 562 (873)
Q Consensus 505 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n 562 (873)
.+.++++.+..+..+...+.+++|+.|.++.|.+....-..-....+++|++|+|++|
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 4455555555555555555556666666666632111100112334455555555555
No 212
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.042 Score=61.13 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=47.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc-ccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN 242 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (873)
...+|+|+|++|+||||++.+++... ..+.....+..++.... ....+.++.....++.... ...+...+...+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~- 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLE- 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHH-
Confidence 35799999999999999999888765 22222233455544221 1122333333344443221 1223333333333
Q ss_pred HhccCCeEEEEeccc
Q 002863 243 ILSKKKFVLLLDDMW 257 (873)
Q Consensus 243 ~l~~k~~LlVlDdv~ 257 (873)
.+.+ .=+|++|..-
T Consensus 425 ~l~~-~DLVLIDTaG 438 (559)
T PRK12727 425 RLRD-YKLVLIDTAG 438 (559)
T ss_pred Hhcc-CCEEEecCCC
Confidence 3333 4578888874
No 213
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.83 E-value=0.00018 Score=82.65 Aligned_cols=109 Identities=24% Similarity=0.173 Sum_probs=55.3
Q ss_pred CCCcccEEEecCCc-cccCCCCchhhhcCCcceEEecCCC-CC--------CccccCcccCCEEecCCCC-CCccc-hhh
Q 002863 524 TSPRLLTLFLNSNY-FKNDKVNYHFFKSMASLRVLKLSHS-DL--------PCEISNLVSLQYLDLSNSI-PDRLP-LGL 591 (873)
Q Consensus 524 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~l~~Lr~L~L~~n-~l--------p~~i~~L~~L~~L~L~~~~-i~~lp-~~i 591 (873)
.++.|+.|.+.++. +.... .......+++|+.|+++++ .. +.....+++|+.|+++++. +...- ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 36777777777664 32211 1344667788888887763 11 1223344666666666554 33221 111
Q ss_pred -hcCCCCcEeeccccccccccChhh-hCCCcccceEeccccCCC
Q 002863 592 -KYLVNLKCLNLEYTFRLSRISPQV-ISNLKMLRVLRMFECGSF 633 (873)
Q Consensus 592 -~~l~~L~~L~L~~~~~l~~l~~~~-i~~l~~L~~L~l~~~~~~ 633 (873)
..+++|++|.+.+|..++...-.. ..++++|++|++++|...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 225566666666563333222111 234566666666665433
No 214
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.81 E-value=0.001 Score=59.87 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=21.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
||+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 215
>PRK06921 hypothetical protein; Provisional
Probab=96.80 E-value=0.0025 Score=65.75 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=28.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEe
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV 204 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 204 (873)
....+.++|..|+|||+||.++++.. . ...-..+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l-~-~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL-M-RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-h-hhcCceEEEEEH
Confidence 35678999999999999999999986 2 221234566653
No 216
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.02 Score=66.46 Aligned_cols=105 Identities=22% Similarity=0.326 Sum_probs=64.9
Q ss_pred CcccchhHHHHHHHHHHhc---------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLME---------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQ 214 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 214 (873)
..++|-++.++.+.+.+.. ...++...+|+.|||||-||++++.... +.=+..+-+..|.-...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf---g~e~aliR~DMSEy~Ek---- 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF---GDEQALIRIDMSEYMEK---- 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc---CCCccceeechHHHHHH----
Confidence 3579999999999988863 2456778899999999999999888761 11133444444433222
Q ss_pred HHHHHHhCCCCccccccCHHHHHHHHHHHhccCCe-EEEEeccccc
Q 002863 215 EIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKF-VLLLDDMWEL 259 (873)
Q Consensus 215 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~ 259 (873)
+.+.+-+|.++.. ...+ + .-.|-+.++.++| +|.||+|...
T Consensus 564 HsVSrLIGaPPGY-VGye--e-GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 564 HSVSRLIGAPPGY-VGYE--E-GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHhCCCCCC-ceec--c-ccchhHhhhcCCCeEEEechhhhc
Confidence 2223334443321 1111 1 2345566778888 7778999753
No 217
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.77 E-value=0.011 Score=71.34 Aligned_cols=46 Identities=30% Similarity=0.340 Sum_probs=37.7
Q ss_pred CcccchhHHHHHHHHHHhc------CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLME------EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+++|.+..++.+.+++.. ....++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999998887642 134589999999999999999999886
No 218
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.77 E-value=0.0017 Score=68.60 Aligned_cols=79 Identities=18% Similarity=0.274 Sum_probs=54.0
Q ss_pred cccchhHHHHHHHHHHhc------CCcEEEEEEeCCCCcHHHHHHHHHhhhccC----CCCCceEEEEE----eCCcc--
Q 002863 145 TVVGLQLTFDRVWRCLME------EHVGIVGLYGMGGVGKTTLLTQINNRFFDT----PNHFDFVIWVV----VSRDL-- 208 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~----~s~~~-- 208 (873)
+++|.++.++++++++.. ...+++.++|++|+||||||+.+.+..... .+.|-..-|.. +.+.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~ 131 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLH 131 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcc
Confidence 689999999999999864 245789999999999999999998877211 22444555522 11111
Q ss_pred -cHHHHHHHHHHHhCC
Q 002863 209 -QLEKIQEIIAKKIGL 223 (873)
Q Consensus 209 -~~~~~~~~i~~~l~~ 223 (873)
-+.+....+.+.+++
T Consensus 132 l~p~~~r~~~~~~~~~ 147 (361)
T smart00763 132 LFPDELREDLEDEYGI 147 (361)
T ss_pred cCCHHHHHHHHHHhCC
Confidence 234555555666664
No 219
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.046 Score=58.27 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=56.6
Q ss_pred cCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEccc-hhhh-hccccccceeeccCChhhhHHHHHHHhcCCCC
Q 002863 246 KKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTRE-FEVC-GQMEAHRSFKVECLRYDDAWKLFELKVGADTL 321 (873)
Q Consensus 246 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 321 (873)
+++-++|+|+++.. .....+...+..- ..++.+|++|.+ ..+. +.......+.+.+++.++..+.+.+. + .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~-~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEP-PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-G-V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCC-CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-C-C--
Confidence 45558899999764 2344443333332 455565555554 4443 22334578999999999999988765 1 1
Q ss_pred CCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002863 322 DSHPDIPELAETLAKDCGGLPLALITVG 349 (873)
Q Consensus 322 ~~~~~~~~~~~~i~~~c~glPLai~~~~ 349 (873)
++ ...++..++|.|..+..+.
T Consensus 206 ---~~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 ---AD----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ---Ch----HHHHHHHcCCCHHHHHHHH
Confidence 11 2345788899997655443
No 220
>PRK04296 thymidine kinase; Provisional
Probab=96.69 E-value=0.0018 Score=63.38 Aligned_cols=113 Identities=18% Similarity=0.114 Sum_probs=62.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhc
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS 245 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (873)
.++.|+|+.|.||||+|.....+. .. +-..++.+. ..++.......++.+++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~-~~--~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY-EE--RGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH-HH--cCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 478899999999999999888876 22 222233332 1112222233455666543222112334445555544 33
Q ss_pred cCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEccchh
Q 002863 246 KKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTREFE 287 (873)
Q Consensus 246 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~ 287 (873)
++.-+||+|.+.-. .+..++...+. ..|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~---~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD---DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH---HcCCeEEEEecCcc
Confidence 45569999999542 11222222211 45778999998854
No 221
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.68 E-value=0.033 Score=57.67 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHH
Q 002863 152 TFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQ 214 (873)
Q Consensus 152 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 214 (873)
-++++..++..+ .-|.+.|++|+|||++|+.++... ... ...++++...+..+++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~~---~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DRP---VMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CCC---EEEEeCCccCCHHHHh
Confidence 344555555433 345689999999999999998754 222 3455666555544443
No 222
>PRK09183 transposase/IS protein; Provisional
Probab=96.67 E-value=0.0022 Score=66.08 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+.|+|++|+|||+||..+++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3467799999999999999998765
No 223
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.66 E-value=0.0078 Score=61.00 Aligned_cols=46 Identities=26% Similarity=0.326 Sum_probs=35.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKI 213 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 213 (873)
...++.|+|.+|+|||++|.+++.... ..-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 457999999999999999999887662 234578899887 5555443
No 224
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.65 E-value=0.0059 Score=64.30 Aligned_cols=117 Identities=25% Similarity=0.192 Sum_probs=66.0
Q ss_pred chhHHHHHHHHHHhc----CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCC
Q 002863 148 GLQLTFDRVWRCLME----EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGL 223 (873)
Q Consensus 148 gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 223 (873)
++....+...+++.. ....-+.++|..|+|||.||.++++... ...+. +.++++ ..++..+....+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~-v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVS-STLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCC-EEEEEH------HHHHHHHHHHHhc
Confidence 455555555556542 1345788999999999999999999872 33333 455544 3455555544421
Q ss_pred CCccccccCHHHHHHHHHHHhccCCeEEEEeccccc--ccccc--ccccC-CCCCCCCcEEEEEccc
Q 002863 224 FNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL--VDLDQ--VGLPI-PSRTSVSNKVVFTTRE 285 (873)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~--~~~~l-~~~~~~gs~iivTtR~ 285 (873)
.+..+.. +.+ .+-=||||||+... .+|.. +...+ ......+-.+|+||.-
T Consensus 206 -------~~~~~~l----~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 -------GSVKEKI----DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -------CcHHHHH----HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1222222 222 24568999999643 44542 32222 1110234467888853
No 225
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.63 E-value=0.011 Score=58.99 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=36.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQE 215 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 215 (873)
.-+++.|+|++|+|||++|.+++... ...-..++|++... +....+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 45799999999999999999887765 22346789999875 55555444
No 226
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.63 E-value=0.0038 Score=64.45 Aligned_cols=135 Identities=14% Similarity=0.223 Sum_probs=72.1
Q ss_pred cchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEE----EeCCcc---------cHHHH
Q 002863 147 VGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWV----VVSRDL---------QLEKI 213 (873)
Q Consensus 147 vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv----~~s~~~---------~~~~~ 213 (873)
-+|..+..--+++|.++++..|.+.|.+|.|||-||-+..=...-.++.|..++-. .+++.. .....
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PW 306 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPW 306 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccch
Confidence 34666777778889999999999999999999988865432221234555543321 233221 11112
Q ss_pred HHHHHHHhCCCCccccccCHHHHHHHHH----------HHhccC---CeEEEEeccccccccccccccCCCCCCCCcEEE
Q 002863 214 QEIIAKKIGLFNESWKNKSMQEKAQQIF----------NILSKK---KFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVV 280 (873)
Q Consensus 214 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~----------~~l~~k---~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~ii 280 (873)
++.|..-+..-... .... ....+.+. .+.+|+ .-++|+|...+... .++...+... +.||||+
T Consensus 307 mq~i~DnLE~L~~~-~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~-G~GsKIV 382 (436)
T COG1875 307 MQAIFDNLEVLFSP-NEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRA-GEGSKIV 382 (436)
T ss_pred HHHHHhHHHHHhcc-cccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhc-cCCCEEE
Confidence 33332222110000 1111 22222221 234555 45899999976421 1222233333 8899999
Q ss_pred EEccc
Q 002863 281 FTTRE 285 (873)
Q Consensus 281 vTtR~ 285 (873)
.|---
T Consensus 383 l~gd~ 387 (436)
T COG1875 383 LTGDP 387 (436)
T ss_pred EcCCH
Confidence 98753
No 227
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.61 E-value=0.018 Score=58.34 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=55.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCC------ceEEEEEeCCcccHHHHHHHHHHHhCCCCc-------cccc
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF------DFVIWVVVSRDLQLEKIQEIIAKKIGLFNE-------SWKN 230 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~~~ 230 (873)
...++.|+|.+|+|||++|.+++... ...- ..++|++....++...+.+ +.+..+.... -...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeC
Confidence 45699999999999999999887664 1222 4678998887777655443 3333221110 0112
Q ss_pred cCHHHHHHHHHHHhc----cCCeEEEEeccc
Q 002863 231 KSMQEKAQQIFNILS----KKKFVLLLDDMW 257 (873)
Q Consensus 231 ~~~~~~~~~l~~~l~----~k~~LlVlDdv~ 257 (873)
.+.++....+....+ .+.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 344555555554432 345589999984
No 228
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.59 E-value=0.01 Score=71.06 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=59.1
Q ss_pred CcccchhHHHHHHHHHHhc-------C--CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLME-------E--HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQ 214 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 214 (873)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.++... . ...+.++.+.-.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~---~~~~~~d~se~~~~~--- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---G---VHLERFDMSEYMEKH--- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---c---CCeEEEeCchhhhcc---
Confidence 4578888888888887752 1 23468899999999999999998875 1 223555554422211
Q ss_pred HHHHHHhCCCCccccccCHHHHHHHHHHHhccCC-eEEEEeccccc
Q 002863 215 EIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKK-FVLLLDDMWEL 259 (873)
Q Consensus 215 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~ 259 (873)
.+...+|.+.. ....+. ...+.+.++.++ -+++||+++..
T Consensus 525 -~~~~lig~~~g-yvg~~~---~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 525 -TVSRLIGAPPG-YVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred -cHHHHhcCCCC-Ccccch---hhHHHHHHHhCCCeEEEEechhhc
Confidence 11222232211 111111 122334444444 49999999753
No 229
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.059 Score=57.63 Aligned_cols=177 Identities=10% Similarity=0.058 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhcCC-cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc--
Q 002863 151 LTFDRVWRCLMEEH-VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES-- 227 (873)
Q Consensus 151 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-- 227 (873)
..-+++.+.+..+. ...+.+.|+.|+||+|+|..++.... -...-+.. .++.. .--+.+.. |.+++-
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~Ll-C~~~~~~~---~Cg~C----~sC~~~~~--g~HPD~~~ 78 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLM-CQQPQGHK---SCGHC----RGCQLMQA--GTHPDYYT 78 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHc-CCCCCCCC---CCCCC----HHHHHHHc--CCCCCEEE
Confidence 34566777776654 45788999999999999998776541 00000000 01100 00000000 000000
Q ss_pred --c----cccCHHHHHHHHHHHh-----ccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccc-hhhh-hcc
Q 002863 228 --W----KNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTRE-FEVC-GQM 292 (873)
Q Consensus 228 --~----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~-~~v~-~~~ 292 (873)
. .... -+.++.+.+.+ .+++=++|+|+++... .-..+...+..- ..++.+|++|.+ ..+. +..
T Consensus 79 i~p~~~~~~I~-idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 79 LTPEKGKSSLG-VDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP-PENTWFFLACREPARLLATLR 156 (334)
T ss_pred EecccccccCC-HHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC-CCCeEEEEEECChhhChHHHH
Confidence 0 0011 12222333333 3566799999997542 233333333332 445666666655 4443 223
Q ss_pred ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHH
Q 002863 293 EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALIT 347 (873)
Q Consensus 293 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 347 (873)
+....+.+.+++++++.+.+.+..+.. .+.+..+++.++|.|..+..
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~~~~--------~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREVTMS--------QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHccCCC--------HHHHHHHHHHcCCCHHHHHH
Confidence 446678999999999998886542211 23367889999999975443
No 230
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.57 E-value=0.087 Score=58.20 Aligned_cols=90 Identities=23% Similarity=0.194 Sum_probs=52.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc-ccHHHHHHHHHHHhCCCCccc-cccCHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQEIIAKKIGLFNESW-KNKSMQEKAQQIF 241 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 241 (873)
...+|.++|.+|+||||+|..++... .. ..+ .+..|++... ....+.++.++++++.+.... ...+....+....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 46799999999999999999998877 32 223 3344443321 123455667777776543211 1233334343334
Q ss_pred HHhccCCeEEEEeccc
Q 002863 242 NILSKKKFVLLLDDMW 257 (873)
Q Consensus 242 ~~l~~k~~LlVlDdv~ 257 (873)
+.+.+. -+||+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 444444 567788773
No 231
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.57 E-value=0.012 Score=60.42 Aligned_cols=91 Identities=24% Similarity=0.317 Sum_probs=54.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccC----CCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc-------ccccC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDT----PNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES-------WKNKS 232 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 232 (873)
...+.=|+|.+|+|||.|+.+++-.. .. ...=..++|++....|...++. +|+++.+...++ ....+
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~ 114 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFD 114 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SS
T ss_pred CCcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCC
Confidence 34589999999999999998876543 11 1223479999999988887775 466665543211 01123
Q ss_pred HHHH---HHHHHHHhc-cCCeEEEEecc
Q 002863 233 MQEK---AQQIFNILS-KKKFVLLLDDM 256 (873)
Q Consensus 233 ~~~~---~~~l~~~l~-~k~~LlVlDdv 256 (873)
.+++ ...+...+. .+--|||+|.+
T Consensus 115 ~~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHHhhccccceEEEEecch
Confidence 3333 333333332 34458888887
No 232
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.56 E-value=0.013 Score=69.91 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=86.1
Q ss_pred CCcccchhHHHHHHHHHHhc------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHH
Q 002863 143 PPTVVGLQLTFDRVWRCLME------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEI 216 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 216 (873)
..+.+|.+..+++|+++|.. ....++.++|++|+||||+|+.++... ...|- -+..+...+..++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~---~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYV---RMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEEcCCCCCHHHhccc
Confidence 34579999999999988862 245689999999999999999999876 22332 2333433333332211
Q ss_pred HHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccc-c-----ccccccCC--------C------CCCCC
Q 002863 217 IAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD-L-----DQVGLPIP--------S------RTSVS 276 (873)
Q Consensus 217 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-~-----~~~~~~l~--------~------~~~~g 276 (873)
-....| .........+.. .....-+++||.++.... . ..+...+. + .+-..
T Consensus 395 ~~~~~g--------~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIG--------SMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCC--------CCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 111111 111222222222 122344788999964311 0 11111110 0 00133
Q ss_pred cEEEEEccchhhhhc-cccccceeeccCChhhhHHHHHHHh
Q 002863 277 NKVVFTTREFEVCGQ-MEAHRSFKVECLRYDDAWKLFELKV 316 (873)
Q Consensus 277 s~iivTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~ 316 (873)
.-+|.|+....+... .+....+++.+++++|-.++.+++.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 344455544332111 1234578899999999888887765
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.56 E-value=0.0028 Score=67.26 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=27.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEe
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV 204 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 204 (873)
.-+.++|..|+|||+||.++++... ...+ .++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~-~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGK-SVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCC-eEEEEEH
Confidence 6789999999999999999999872 2233 4566644
No 234
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.00019 Score=70.63 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=29.5
Q ss_pred cceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC
Q 002863 504 KDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL 564 (873)
Q Consensus 504 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l 564 (873)
.+++.|++.++.+..+.....++.|++|.|+-|+++.+. + |..|++|+.|.|..|.|
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--p--l~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--P--LQRCTRLKELYLRKNCI 75 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch--h--HHHHHHHHHHHHHhccc
Confidence 345555555555555544455555555555555554443 1 44555555555555544
No 235
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.54 E-value=0.00046 Score=79.21 Aligned_cols=108 Identities=22% Similarity=0.206 Sum_probs=67.0
Q ss_pred hhcCCcceEEecCCC-CCC-----ccccCcccCCEEecCCC--CCCccc----hhhhcCCCCcEeeccccccccccChhh
Q 002863 548 FKSMASLRVLKLSHS-DLP-----CEISNLVSLQYLDLSNS--IPDRLP----LGLKYLVNLKCLNLEYTFRLSRISPQV 615 (873)
Q Consensus 548 ~~~l~~Lr~L~L~~n-~lp-----~~i~~L~~L~~L~L~~~--~i~~lp----~~i~~l~~L~~L~L~~~~~l~~l~~~~ 615 (873)
...+++|+.|.+.++ .+. .....+++|+.|+++++ .+...+ .....+++|+.|++++|..++...-..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 455788999988888 332 34467788999998863 222111 234556888888888885455444333
Q ss_pred hC-CCcccceEeccccCCCchhhHHH-hcCCCCCceeEEEEc
Q 002863 616 IS-NLKMLRVLRMFECGSFLDSLVEE-LLGLEHLNVLTITLH 655 (873)
Q Consensus 616 i~-~l~~L~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~~ 655 (873)
+. .+++|++|.+.+|...+...+.. ...+++|+.|+++.+
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 43 37888888877665444443333 344666777777643
No 236
>PRK04132 replication factor C small subunit; Provisional
Probab=96.54 E-value=0.039 Score=65.48 Aligned_cols=151 Identities=13% Similarity=0.067 Sum_probs=92.3
Q ss_pred CCCCcHHHHHHHHHhhhccCCCCC-ceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEE
Q 002863 173 MGGVGKTTLLTQINNRFFDTPNHF-DFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVL 251 (873)
Q Consensus 173 ~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 251 (873)
|.++||||+|..++++.. . ..+ ..++-++.|+......+...+-+...... . -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~-g-~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~---~--------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELF-G-ENWRHNFLELNASDERGINVIREKVKEFARTKP---I--------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhh-c-ccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC---c--------------CCCCCEEE
Confidence 778999999999999861 1 222 24667778876555544433322221110 0 01245799
Q ss_pred EEecccccc--ccccccccCCCCCCCCcEEEEEccch-hhhhc-cccccceeeccCChhhhHHHHHHHhcCCCCCCCCCh
Q 002863 252 LLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-EVCGQ-MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDI 327 (873)
Q Consensus 252 VlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~ 327 (873)
|+|+++... ....+...+..- ...+++|++|.+. .+... ...+..+++.+++.++....+.+.+.......+
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep-~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~--- 710 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMF-SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT--- 710 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCC-CCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---
Confidence 999998653 344444444332 3456766666554 33222 234678999999999999888877654332211
Q ss_pred HHHHHHHHHHhCCchhHHH
Q 002863 328 PELAETLAKDCGGLPLALI 346 (873)
Q Consensus 328 ~~~~~~i~~~c~glPLai~ 346 (873)
++....|++.|+|.+-.+.
T Consensus 711 ~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 4568899999999875443
No 237
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.19 Score=56.49 Aligned_cols=163 Identities=17% Similarity=0.205 Sum_probs=87.2
Q ss_pred cccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 145 TVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++=|-++.+.+|.+.+.- ...+-|..+|++|+|||++|+++++.. +..| +.++..
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----
Confidence 444566666666554431 245678899999999999999999986 4444 233221
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEeccccccc-------------cccccccCCCCCCCCc
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELVD-------------LDQVGLPIPSRTSVSN 277 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~gs 277 (873)
+++.. |-..+ +..+..+.+.- +--+.++.||.++.... +.++..-+... ....
T Consensus 503 EL~sk-----------~vGeS-Er~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~-e~~k 569 (693)
T KOG0730|consen 503 ELFSK-----------YVGES-ERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGL-EALK 569 (693)
T ss_pred HHHHH-----------hcCch-HHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccc-cccC
Confidence 11111 01111 22233333222 34578899998853210 11121222221 2222
Q ss_pred E--EEEEccchh-hhh-ccc---cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHH
Q 002863 278 K--VVFTTREFE-VCG-QME---AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAE 332 (873)
Q Consensus 278 ~--iivTtR~~~-v~~-~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~ 332 (873)
. ||-.|..++ +-. .+. ..+.+.++.-+.+.-.++|+.++.........+++++++
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 2 333333332 211 122 355677877778888899999987766555556655554
No 238
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.52 E-value=0.059 Score=53.71 Aligned_cols=208 Identities=12% Similarity=0.137 Sum_probs=116.7
Q ss_pred ccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhcc---CCCCCceEEEEEeCCc----------c----
Q 002863 146 VVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFD---TPNHFDFVIWVVVSRD----------L---- 208 (873)
Q Consensus 146 ~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~----------~---- 208 (873)
+.++++...++......++.+-..++|+.|.||-|.+..+.+...- .+-.-+...|.+.|.. +
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 5777777777777766677889999999999999988766655311 1223345555544332 1
Q ss_pred -------cHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCe-EEEEeccccc--cccccccccCCCCCCCCcE
Q 002863 209 -------QLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKF-VLLLDDMWEL--VDLDQVGLPIPSRTSVSNK 278 (873)
Q Consensus 209 -------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~ 278 (873)
.-+-+.++|+++.+-... . +.-.++.| ++|+-.++.. +.-..++.....- .+.+|
T Consensus 95 tPSDaG~~DRvViQellKevAQt~q------i--------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY-s~~~R 159 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQ------I--------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKY-SSNCR 159 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcc------h--------hhccccceEEEEEechHhhhHHHHHHHHHHHHHH-hcCce
Confidence 012233333333321100 0 00112445 5555555432 1222222222222 45567
Q ss_pred EEEEccch-hh-hhccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch-hHHHHHHHHHhcC
Q 002863 279 VVFTTREF-EV-CGQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP-LALITVGRAMASR 355 (873)
Q Consensus 279 iivTtR~~-~v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l~~~ 355 (873)
+|+...+- .+ ...-...-.+++...+++|....+++.+.......+ ++++++|+++++|.- -|+-++- .++-+
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE-~~~~~ 235 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLE-AVRVN 235 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHH-HHHhc
Confidence 77644321 11 111123446899999999999999998876664333 678999999999854 4444332 22221
Q ss_pred ----------CChHHHHHHHHHHHchh
Q 002863 356 ----------KTPREWEHAIEVLRSSA 372 (873)
Q Consensus 356 ----------~~~~~w~~~~~~l~~~~ 372 (873)
-..-+|+-.........
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~i 262 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARVI 262 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHHH
Confidence 13457998877766653
No 239
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.51 E-value=0.003 Score=62.40 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=59.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH-HHHHHHHHHhCCCCccccccCHHHHHHHHHHHh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE-KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL 244 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (873)
++|.|+|+.|+||||++..+.... .......+++ +.++.... .-...+..+-. ...+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILT-IEDPIEFVHESKRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEE-EcCCccccccCccceeeecc------cCCCccCHHHHHHHHh
Confidence 578999999999999999887765 1222333332 22211100 00000111100 0112233455677777
Q ss_pred ccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhh
Q 002863 245 SKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVC 289 (873)
Q Consensus 245 ~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~ 289 (873)
...+=.+++|++.+........... ..|-.++.|+...++.
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a----~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA----ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH----HcCCEEEEEecCCcHH
Confidence 7778899999997765544432222 2344577777665443
No 240
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.50 E-value=0.0075 Score=63.39 Aligned_cols=86 Identities=17% Similarity=0.170 Sum_probs=56.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc---ccccCHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES---WKNKSMQEKAQQI 240 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 240 (873)
.-+++-|+|++|+||||||.+++-.. ...-..++||+....+++. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45789999999999999999887665 1233467899887766653 34555543211 1223445555555
Q ss_pred HHHhc-cCCeEEEEeccc
Q 002863 241 FNILS-KKKFVLLLDDMW 257 (873)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~ 257 (873)
...++ +..-++|+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55543 456799999984
No 241
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.47 E-value=0.014 Score=59.71 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=54.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCC----CCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc-------ccccC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPN----HFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES-------WKNKS 232 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 232 (873)
...++.|+|.+|+||||+|.+++-.. .... .-..++|++....++..++. ++++..+..... ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 45799999999999999999987543 1111 13578999988877655443 344444332110 01112
Q ss_pred HH---HHHHHHHHHhc-c-CCeEEEEeccc
Q 002863 233 MQ---EKAQQIFNILS-K-KKFVLLLDDMW 257 (873)
Q Consensus 233 ~~---~~~~~l~~~l~-~-k~~LlVlDdv~ 257 (873)
.+ .....+.+.+. . +.-+||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 22 23344444443 3 56688888873
No 242
>PRK06696 uridine kinase; Validated
Probab=96.45 E-value=0.0041 Score=62.76 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=35.2
Q ss_pred chhHHHHHHHHHHhc---CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 148 GLQLTFDRVWRCLME---EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 148 gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|++.+++|.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 466777888877753 467899999999999999999999876
No 243
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.013 Score=60.08 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=47.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI 243 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (873)
...-+.++|.+|+|||.||.++.+.. - +..+. +.++ +..++..++.....- .. ...++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l-~-~~g~s-v~f~------~~~el~~~Lk~~~~~-------~~---~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL-L-KAGIS-VLFI------TAPDLLSKLKAAFDE-------GR---LEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-H-HcCCe-EEEE------EHHHHHHHHHHHHhc-------Cc---hHHHHHHH
Confidence 55678899999999999999999998 2 33444 4444 455666666555432 11 11112221
Q ss_pred hccCCeEEEEecccc
Q 002863 244 LSKKKFVLLLDDMWE 258 (873)
Q Consensus 244 l~~k~~LlVlDdv~~ 258 (873)
+ .+-=||||||+..
T Consensus 165 l-~~~dlLIiDDlG~ 178 (254)
T COG1484 165 L-KKVDLLIIDDIGY 178 (254)
T ss_pred h-hcCCEEEEecccC
Confidence 2 1334899999964
No 244
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.43 E-value=0.027 Score=56.77 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=32.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCccc
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ 209 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 209 (873)
...++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 46799999999999999999988765 12234577887655543
No 245
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.42 E-value=0.022 Score=57.67 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=45.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL 244 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (873)
...+.++|.+|+|||+||.++++... . .-..+++++ ..++...+-..... ...+.. .+.+.+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~-~--~g~~v~~it------~~~l~~~l~~~~~~-----~~~~~~----~~l~~l 160 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL-L--RGKSVLIIT------VADIMSAMKDTFSN-----SETSEE----QLLNDL 160 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH-h--cCCeEEEEE------HHHHHHHHHHHHhh-----ccccHH----HHHHHh
Confidence 35788999999999999999999872 1 223455553 44455544433321 111222 233334
Q ss_pred ccCCeEEEEeccccc
Q 002863 245 SKKKFVLLLDDMWEL 259 (873)
Q Consensus 245 ~~k~~LlVlDdv~~~ 259 (873)
. +.=+||+||+...
T Consensus 161 ~-~~dlLvIDDig~~ 174 (244)
T PRK07952 161 S-NVDLLVIDEIGVQ 174 (244)
T ss_pred c-cCCEEEEeCCCCC
Confidence 4 3458888999643
No 246
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.40 E-value=0.011 Score=62.24 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=56.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc---ccccCHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES---WKNKSMQEKAQQI 240 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 240 (873)
.-+++-|+|++|+||||||.++..... ..-..++||+....++.. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 457999999999999999988777651 223457788777665553 35556553221 1223445555555
Q ss_pred HHHhc-cCCeEEEEeccc
Q 002863 241 FNILS-KKKFVLLLDDMW 257 (873)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~ 257 (873)
...++ +..-++|+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55453 466799999985
No 247
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.39 E-value=0.024 Score=58.00 Aligned_cols=171 Identities=19% Similarity=0.168 Sum_probs=94.7
Q ss_pred CcccchhHHHHHHHHHHhc----CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH-HHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLME----EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE-KIQEIIA 218 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~ 218 (873)
..++|-.++..++-+++.. ++..-|.|+|+.|.|||+|...+..+..+..++| .-|......-.+ -.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 3579999999999888864 4555677999999999999987777642334443 334444433222 2345555
Q ss_pred HHhCCCCc--cccccCHHHHHHHHHHHhcc------CCeEEEEeccccccc------cccccccCCCCCCCCcEEEEEcc
Q 002863 219 KKIGLFNE--SWKNKSMQEKAQQIFNILSK------KKFVLLLDDMWELVD------LDQVGLPIPSRTSVSNKVVFTTR 284 (873)
Q Consensus 219 ~~l~~~~~--~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~~------~~~~~~~l~~~~~~gs~iivTtR 284 (873)
.|+..... .....+..+....+...|+. -+++.|+|.++--.. +-.+...-.....+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 55432111 01223344445555555532 357888888753211 11111111111134456778998
Q ss_pred chhh-------hhccccccceeeccCChhhhHHHHHHHhc
Q 002863 285 EFEV-------CGQMEAHRSFKVECLRYDDAWKLFELKVG 317 (873)
Q Consensus 285 ~~~v-------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 317 (873)
-.-. -..+.-..++-++.++-++...++++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 5422 22222222445667777888888877763
No 248
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.39 E-value=0.024 Score=68.70 Aligned_cols=47 Identities=26% Similarity=0.346 Sum_probs=37.6
Q ss_pred CCcccchhHHHHHHHHHHhc-------C--CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 143 PPTVVGLQLTFDRVWRCLME-------E--HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...++|.+..++.+...+.. . ...++.++|+.|+|||++|+.+++..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999998888887753 1 12578899999999999999998765
No 249
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.38 E-value=0.019 Score=58.71 Aligned_cols=91 Identities=18% Similarity=0.332 Sum_probs=55.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCC-ceEEEEEeCCcc-cHHHHHHHHHHHhCCCCcc----ccccCHHH--
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF-DFVIWVVVSRDL-QLEKIQEIIAKKIGLFNES----WKNKSMQE-- 235 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~-- 235 (873)
.-.-++|.|..|+||||||+.+++.. +.+| +..+++-+.+.. ...++.+.+.+.-.+.... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 45578999999999999999999987 2334 355566666543 4556666665432221100 01111111
Q ss_pred ----HHHHHHHHh--c-cCCeEEEEeccc
Q 002863 236 ----KAQQIFNIL--S-KKKFVLLLDDMW 257 (873)
Q Consensus 236 ----~~~~l~~~l--~-~k~~LlVlDdv~ 257 (873)
.+-.+.+++ + |+.+|+++||+-
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 122333455 3 899999999984
No 250
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0091 Score=66.78 Aligned_cols=72 Identities=28% Similarity=0.295 Sum_probs=50.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc--ccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD--LQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN 242 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (873)
.+-|.|.|+.|+|||+||+++++... +...-.+.+|+++.- ...+.+++.+... ..+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v-------------------fse 489 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV-------------------FSE 489 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHHH-------------------HHH
Confidence 45788999999999999999999983 566666777777643 2233333333221 223
Q ss_pred HhccCCeEEEEeccc
Q 002863 243 ILSKKKFVLLLDDMW 257 (873)
Q Consensus 243 ~l~~k~~LlVlDdv~ 257 (873)
.+...+-+|||||++
T Consensus 490 ~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLD 504 (952)
T ss_pred HHhhCCcEEEEcchh
Confidence 456789999999996
No 251
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.36 E-value=0.011 Score=71.52 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=38.3
Q ss_pred CCcccchhHHHHHHHHHHhc---------CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 143 PPTVVGLQLTFDRVWRCLME---------EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...++|.+..++.+.+.+.. ....++.++|+.|+|||.+|+.++...
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999888742 134578999999999999999988775
No 252
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.36 E-value=0.011 Score=55.24 Aligned_cols=116 Identities=19% Similarity=0.197 Sum_probs=60.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEE---eCCcccHHHHHHHHH--H--HhCCCCccccccCHHH---
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV---VSRDLQLEKIQEIIA--K--KIGLFNESWKNKSMQE--- 235 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~~i~--~--~l~~~~~~~~~~~~~~--- 235 (873)
+.|-|++..|.||||+|...+-+. ....+. +.++. -........+++.+- . +.+.. ..+...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra--~~~g~~-v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~-~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA--LGHGYR-VGVVQFLKGGWKYGELKALERLPNIEIHRMGRG-FFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH--HHCCCe-EEEEEEeCCCCccCHHHHHHhCCCcEEEECCCC-CccCCCChHHHHH
Confidence 578899999999999998877665 122333 33333 222334444444331 0 00100 0011111221
Q ss_pred ----HHHHHHHHhcc-CCeEEEEeccccc-----cccccccccCCCCCCCCcEEEEEccch
Q 002863 236 ----KAQQIFNILSK-KKFVLLLDDMWEL-----VDLDQVGLPIPSRTSVSNKVVFTTREF 286 (873)
Q Consensus 236 ----~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~~~~~l~~~~~~gs~iivTtR~~ 286 (873)
..+..++.+.. +-=|||||++-.. .+.+.+...+... ..+.-||+|.|+.
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r-p~~~evIlTGr~~ 138 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK-PEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC-CCCCEEEEECCCC
Confidence 12223334443 4459999998643 2333444444443 5567899999985
No 253
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.36 E-value=0.018 Score=62.11 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=78.6
Q ss_pred cccchhHHHHHHHHHHhc-CCcE-EEEEEeCCCCcHHHHHHHHHhhhccCCC-------------------CCceEEEEE
Q 002863 145 TVVGLQLTFDRVWRCLME-EHVG-IVGLYGMGGVGKTTLLTQINNRFFDTPN-------------------HFDFVIWVV 203 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~-~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 203 (873)
.++|-+....++..+... ++.+ .+.++|++|+||||+|..+.+... ... ..+.+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL-CENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh-CCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 357777788888888774 4444 499999999999999999988762 111 123344444
Q ss_pred eCCccc---HHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccc--cccccccCCCCCCCCcE
Q 002863 204 VSRDLQ---LEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD--LDQVGLPIPSRTSVSNK 278 (873)
Q Consensus 204 ~s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~~gs~ 278 (873)
.+.... ..+..+++.+....... .++.-++++|+++.... -..+...+... ...+.
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~------------------~~~~kviiidead~mt~~A~nallk~lEep-~~~~~ 141 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPL------------------EGGYKVVIIDEADKLTEDAANALLKTLEEP-PKNTR 141 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCC------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccC-CCCeE
Confidence 444433 23334444433332110 35677999999976422 22232223222 45567
Q ss_pred EEEEccch-hhhhcc-ccccceeecc
Q 002863 279 VVFTTREF-EVCGQM-EAHRSFKVEC 302 (873)
Q Consensus 279 iivTtR~~-~v~~~~-~~~~~~~l~~ 302 (873)
+|++|.+. .+.... .....+++.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 88777743 232211 2344566665
No 254
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.34 E-value=0.014 Score=70.90 Aligned_cols=47 Identities=26% Similarity=0.339 Sum_probs=38.7
Q ss_pred CCcccchhHHHHHHHHHHhcC---------CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 143 PPTVVGLQLTFDRVWRCLMEE---------HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 345899999999998888631 24578899999999999999998875
No 255
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.33 E-value=0.0018 Score=63.94 Aligned_cols=101 Identities=25% Similarity=0.216 Sum_probs=59.0
Q ss_pred CCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC--C----CCccccCcccCCEEecCCCCCCccc--hhhhcCC
Q 002863 524 TSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS--D----LPCEISNLVSLQYLDLSNSIPDRLP--LGLKYLV 595 (873)
Q Consensus 524 ~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n--~----lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~l~ 595 (873)
.+..|+.|.+.+..++++. .|..+++|+.|.++.| . ++-....+++|++|++++|.|..+- ..+..+.
T Consensus 41 ~~~~le~ls~~n~gltt~~----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceeecc----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 3455666666666655443 2556778888888887 2 2333445577888888877665421 2255666
Q ss_pred CCcEeeccccccccccC---hhhhCCCcccceEeccc
Q 002863 596 NLKCLNLEYTFRLSRIS---PQVISNLKMLRVLRMFE 629 (873)
Q Consensus 596 ~L~~L~L~~~~~l~~l~---~~~i~~l~~L~~L~l~~ 629 (873)
+|..|++.+| ..+.+- ...|.-+++|..|+-..
T Consensus 117 nL~~Ldl~n~-~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 117 NLKSLDLFNC-SVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred chhhhhcccC-CccccccHHHHHHHHhhhhccccccc
Confidence 7777777776 333221 22345566666665543
No 256
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.32 E-value=0.023 Score=60.00 Aligned_cols=92 Identities=15% Similarity=0.248 Sum_probs=57.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCC----CCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc-------cccC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTP----NHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW-------KNKS 232 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~ 232 (873)
..+++-|+|++|+|||+|+.+++-.. ... ..=..++||+....|+++++.+ ++++++...+.. ...+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCC
Confidence 45789999999999999998766433 111 1124789999998888888754 567776543210 1113
Q ss_pred HHHHH---HHHHHHh-ccCCeEEEEeccc
Q 002863 233 MQEKA---QQIFNIL-SKKKFVLLLDDMW 257 (873)
Q Consensus 233 ~~~~~---~~l~~~l-~~k~~LlVlDdv~ 257 (873)
.++.. ..+...+ +++--|||+|.+-
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 33333 3333333 3345588888873
No 257
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.00035 Score=68.84 Aligned_cols=99 Identities=21% Similarity=0.154 Sum_probs=67.0
Q ss_pred CCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC--CccccCcccCCEEecCCCCCCccch--hhhcCCCCcE
Q 002863 524 TSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL--PCEISNLVSLQYLDLSNSIPDRLPL--GLKYLVNLKC 599 (873)
Q Consensus 524 ~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l--p~~i~~L~~L~~L~L~~~~i~~lp~--~i~~l~~L~~ 599 (873)
.+.+.+.|++.+|.+.++. +..+|+.|++|.||-|+| ...+..+++|+.|.|+.|.|..+-+ -+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 3456677777777776664 367788888888888865 3456777788888888777776653 3667778888
Q ss_pred eeccccccccccCh----hhhCCCcccceEe
Q 002863 600 LNLEYTFRLSRISP----QVISNLKMLRVLR 626 (873)
Q Consensus 600 L~L~~~~~l~~l~~----~~i~~l~~L~~L~ 626 (873)
|.|..|.....-++ .++.-|++|+.|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 87777644333332 2456677777776
No 258
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.012 Score=57.31 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=46.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI 243 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (873)
.+-+|+|.|.+|+||||+|+.++... . ..+ +.-++...-+. ..-.....+......+.....+.+-..+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~-~--~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL-G--VEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh-C--cCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45799999999999999999999987 2 221 22222111111 111111222223333333556677778888888
Q ss_pred hccCC
Q 002863 244 LSKKK 248 (873)
Q Consensus 244 l~~k~ 248 (873)
++|++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 259
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.28 E-value=0.2 Score=54.96 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|.++|++|+||||+|.+++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999888766
No 260
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.27 E-value=0.024 Score=53.99 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=29.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL 208 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 208 (873)
++.|+|++|+||||++..+.... ...-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcch
Confidence 46899999999999999998876 2234467777776554
No 261
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.8 Score=49.52 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=80.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL- 244 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l- 244 (873)
+=-.++||+|.|||+++.++++.. .||..- ...+...+-.+ |++.|
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v~~n~d---------------------------Lr~LL~ 282 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEVKLDSD---------------------------LRHLLL 282 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeeccccCcHH---------------------------HHHHHH
Confidence 346689999999999999999986 454221 12221111111 22222
Q ss_pred -ccCCeEEEEecccccccc-----------cc---------ccccC---CCCCCCCcEEE-EEccchhhh-----hcccc
Q 002863 245 -SKKKFVLLLDDMWELVDL-----------DQ---------VGLPI---PSRTSVSNKVV-FTTREFEVC-----GQMEA 294 (873)
Q Consensus 245 -~~k~~LlVlDdv~~~~~~-----------~~---------~~~~l---~~~~~~gs~ii-vTtR~~~v~-----~~~~~ 294 (873)
...+-+||+.|++...+. +. +...+ -.. +.+=||| +||...+-. +.-.-
T Consensus 283 ~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs-cg~ERIivFTTNh~EkLDPALlRpGRm 361 (457)
T KOG0743|consen 283 ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS-CGDERIIVFTTNHKEKLDPALLRPGRM 361 (457)
T ss_pred hCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccccc-CCCceEEEEecCChhhcCHhhcCCCcc
Confidence 235677888888643211 10 11111 111 1123554 577654321 11112
Q ss_pred ccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHH-HHhcC
Q 002863 295 HRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGR-AMASR 355 (873)
Q Consensus 295 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~-~l~~~ 355 (873)
...+.+.--+.+.-..||.+..+... . ..+..+|.+.-.|.-+.=..++. +|..+
T Consensus 362 DmhI~mgyCtf~~fK~La~nYL~~~~--~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 362 DMHIYMGYCTFEAFKTLASNYLGIEE--D----HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred eeEEEcCCCCHHHHHHHHHHhcCCCC--C----cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 34578888899999999998886543 1 23456666655565444444444 44443
No 262
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.25 E-value=0.026 Score=60.11 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=56.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccC----CCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc-------cccC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDT----PNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW-------KNKS 232 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~ 232 (873)
..+++-|+|.+|+|||+|+..++-.. .. ...-..++||+....|.+.++.+ ++++++...+.. ...+
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~-qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTT-QLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHH-hcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCC
Confidence 45688899999999999998876433 11 11224789999999999888755 566676543210 1223
Q ss_pred HHHHH---HHHHHHh-ccCCeEEEEecc
Q 002863 233 MQEKA---QQIFNIL-SKKKFVLLLDDM 256 (873)
Q Consensus 233 ~~~~~---~~l~~~l-~~k~~LlVlDdv 256 (873)
.++.. ..+...+ ..+--|||+|.+
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 33332 2232333 234557888887
No 263
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.013 Score=53.35 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=35.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCC
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFN 225 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 225 (873)
+|.|-|++|+||||+|+.++++. . -.| | +...++++|++..|+.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-g--l~~-----v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-G--LKL-----V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-C--Cce-----e------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999987 1 111 1 34568899999988753
No 264
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.23 E-value=0.01 Score=66.65 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=55.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI 243 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (873)
.-++..++|++|.||||||.-++++. .| .++-|.+|+......+-+.|...+..+. .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 45789999999999999999998875 33 3677888988888877777776665321 2
Q ss_pred h--ccCCeEEEEeccccc
Q 002863 244 L--SKKKFVLLLDDMWEL 259 (873)
Q Consensus 244 l--~~k~~LlVlDdv~~~ 259 (873)
+ .+++.-||+|.++..
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 2 267888999999754
No 265
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.23 E-value=0.1 Score=56.27 Aligned_cols=40 Identities=20% Similarity=0.391 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhc---CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 150 QLTFDRVWRCLME---EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 150 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+...+.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445666666664 467899999999999999999998887
No 266
>PRK09354 recA recombinase A; Provisional
Probab=96.23 E-value=0.016 Score=61.45 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=57.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc---ccccCHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES---WKNKSMQEKAQQI 240 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 240 (873)
.-+++-|+|++|+||||||.+++... ...-..++||.....++.. .++++|...+. ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45799999999999999999887665 2233567899888777652 45556553221 1223455555555
Q ss_pred HHHhc-cCCeEEEEeccc
Q 002863 241 FNILS-KKKFVLLLDDMW 257 (873)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~ 257 (873)
...++ +..-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55553 456799999985
No 267
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.21 E-value=0.011 Score=57.13 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=28.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEE
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWV 202 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 202 (873)
...+|.+.|+.|+||||+|+.++... ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 45689999999999999999999887 2344445554
No 268
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.20 E-value=0.16 Score=56.36 Aligned_cols=88 Identities=26% Similarity=0.237 Sum_probs=48.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-cHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHH
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI 243 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (873)
.++++++|++|+||||++..++... .....-..+..|+..... ...+-++...+.++++.. ...+..+....+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 3589999999999999998887765 201222346666654321 122233444444554331 22334444444433
Q ss_pred hccCCeEEEEeccc
Q 002863 244 LSKKKFVLLLDDMW 257 (873)
Q Consensus 244 l~~k~~LlVlDdv~ 257 (873)
+. ..=+||+|..-
T Consensus 297 ~~-~~DlVlIDt~G 309 (424)
T PRK05703 297 LR-DCDVILIDTAG 309 (424)
T ss_pred hC-CCCEEEEeCCC
Confidence 23 34578888763
No 269
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.011 Score=63.94 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=35.6
Q ss_pred cccchhH---HHHHHHHHHhcC--------C-cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQL---TFDRVWRCLMEE--------H-VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~---~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
++-|-|+ ++++|+++|.+. + .+=|.++|++|.|||-||++|+...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4567664 667788888763 2 4568899999999999999999986
No 270
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.15 E-value=0.015 Score=54.70 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..++.|.|+.|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578999999999999999998874
No 271
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.03 Score=63.00 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=90.5
Q ss_pred cccchhHHHHHHHHHHhc------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHH
Q 002863 145 TVVGLQLTFDRVWRCLME------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIA 218 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 218 (873)
+=+|.++.+++|++++.- -+.+++..+|++|+|||.+|+.++... .+++|. ++++.-.|..+|-..
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL--nRkFfR----fSvGG~tDvAeIkGH-- 483 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL--NRKFFR----FSVGGMTDVAEIKGH-- 483 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh--CCceEE----EeccccccHHhhccc--
Confidence 348999999999998852 256799999999999999999999887 234442 456665565554321
Q ss_pred HHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc-----c----ccc---------ccccCCCCCCCCcEEE
Q 002863 219 KKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV-----D----LDQ---------VGLPIPSRTSVSNKVV 280 (873)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~----~~~---------~~~~l~~~~~~gs~ii 280 (873)
...+...-+...++.++. .+...-|+.+|.|+... | +-+ +...+.+-.-.=|||+
T Consensus 484 ------RRTYVGAMPGkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 484 ------RRTYVGAMPGKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred ------ceeeeccCChHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 111111222333333332 23456688889986421 1 111 1111111112246776
Q ss_pred EEccchhhhh----ccccccceeeccCChhhhHHHHHHHh
Q 002863 281 FTTREFEVCG----QMEAHRSFKVECLRYDDAWKLFELKV 316 (873)
Q Consensus 281 vTtR~~~v~~----~~~~~~~~~l~~L~~~e~~~lf~~~~ 316 (873)
+...-..+.. ..+.-..|++.+...+|-..+-.++.
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 5433222222 12334678899998888777776664
No 272
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.00068 Score=63.98 Aligned_cols=83 Identities=22% Similarity=0.350 Sum_probs=46.5
Q ss_pred CcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccc-cCCC--cCccc
Q 002863 673 SIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHS-KLRQ--VTWLI 749 (873)
Q Consensus 673 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~--l~~l~ 749 (873)
.++.++-+++.+.......+..++.++.|.+.+|..+.+...+.++ ...++|+.|+|++| ++|+ +.++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~--------~~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG--------GLAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc--------ccccchheeeccCCCeechhHHHHHH
Confidence 4555555555554444445555666666666666666554444443 23456666666666 5554 34555
Q ss_pred ccCCCcEEeeccCc
Q 002863 750 LAPNLKHLEVQNCP 763 (873)
Q Consensus 750 ~l~~L~~L~L~~~~ 763 (873)
.+++|+.|.|.+-+
T Consensus 174 ~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 174 KLKNLRRLHLYDLP 187 (221)
T ss_pred HhhhhHHHHhcCch
Confidence 55666666555443
No 273
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.13 E-value=0.089 Score=56.02 Aligned_cols=87 Identities=10% Similarity=0.074 Sum_probs=47.2
Q ss_pred cCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccchh-hhhc-cccccceeeccCChhhhHHHHHHHhcCCCC
Q 002863 246 KKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTREFE-VCGQ-MEAHRSFKVECLRYDDAWKLFELKVGADTL 321 (873)
Q Consensus 246 ~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 321 (873)
+++-++|+|++...+ .-..+...+... ..+..+|++|.+.+ +... ......+.+.+++.+++.+.+.+. +.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep-~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~-~~--- 186 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEP-PPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER-GV--- 186 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhC-cCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc-CC---
Confidence 344455668776532 222222222222 23456777776643 4322 234568899999999998888653 11
Q ss_pred CCCCChHHHHHHHHHHhCCchhH
Q 002863 322 DSHPDIPELAETLAKDCGGLPLA 344 (873)
Q Consensus 322 ~~~~~~~~~~~~i~~~c~glPLa 344 (873)
+.. . ..+..++|.|+.
T Consensus 187 ---~~~---~-~~l~~~~g~p~~ 202 (325)
T PRK08699 187 ---AEP---E-ERLAFHSGAPLF 202 (325)
T ss_pred ---CcH---H-HHHHHhCCChhh
Confidence 111 1 123568899964
No 274
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.12 E-value=0.022 Score=54.99 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
++.++|++|+||||++..++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 275
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.11 E-value=0.047 Score=53.74 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=46.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhhccCCCCCc---eEEEEEeCCcccHHHHHHHHHHHh--CCCCccccccCHHHHHHHHH
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFD---FVIWVVVSRDLQLEKIQEIIAKKI--GLFNESWKNKSMQEKAQQIF 241 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~wv~~s~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 241 (873)
||+|.|++|+||||+|+.+.... . +.... ....+.............. .... ..........+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L-~-~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL-N-KRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-T-TCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-C-ccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 79999999999999999999887 2 12222 2333333322222222222 1111 11112234567777777777
Q ss_pred HHhccCCeEE
Q 002863 242 NILSKKKFVL 251 (873)
Q Consensus 242 ~~l~~k~~Ll 251 (873)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666766544
No 276
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.11 E-value=0.03 Score=59.35 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=41.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCC----CCCceEEEEEeCCcccHHHHHHHHHHHhCCC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTP----NHFDFVIWVVVSRDLQLEKIQEIIAKKIGLF 224 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 224 (873)
...++.|+|.+|+|||||+..++... ... ..-..++|++....+...++ ..+++.++..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~-~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTC-QLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 46799999999999999999887643 111 11235799998887777764 4455666543
No 277
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.10 E-value=0.021 Score=53.67 Aligned_cols=124 Identities=21% Similarity=0.222 Sum_probs=69.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEE---eC------------------Cc---------------
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV---VS------------------RD--------------- 207 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~s------------------~~--------------- 207 (873)
.-..+.++|+.|.||||+.+.+|... +. =...+|+. ++ ++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e-~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE-RP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh-cC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 45689999999999999999999876 21 11233331 00 00
Q ss_pred ------ccHHHHHHHH---HHHhCCCCcc----ccccCHHHHHHHHHHHhccCCeEEEEeccc----cccccccccccCC
Q 002863 208 ------LQLEKIQEII---AKKIGLFNES----WKNKSMQEKAQQIFNILSKKKFVLLLDDMW----ELVDLDQVGLPIP 270 (873)
Q Consensus 208 ------~~~~~~~~~i---~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~----~~~~~~~~~~~l~ 270 (873)
....++.+.. ++..|+.... .+-+.-++..-.|.+.+-+++-+|+-|.-- ....|+-+. .|.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~-lfe 181 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR-LFE 181 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHH-HHH
Confidence 1122333333 3333332210 012223334445666677888899988643 223344332 222
Q ss_pred CCCCCCcEEEEEccchhhhhcc
Q 002863 271 SRTSVSNKVVFTTREFEVCGQM 292 (873)
Q Consensus 271 ~~~~~gs~iivTtR~~~v~~~~ 292 (873)
.-...|..||++|.+.++...+
T Consensus 182 einr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 182 EINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHhhcCcEEEEEeccHHHHHhc
Confidence 2116789999999999887665
No 278
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.09 E-value=0.035 Score=57.17 Aligned_cols=125 Identities=15% Similarity=0.068 Sum_probs=67.7
Q ss_pred HHHHHHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEE---eCCcccHHHHHHHHHHHhC-CCCcc
Q 002863 153 FDRVWRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV---VSRDLQLEKIQEIIAKKIG-LFNES 227 (873)
Q Consensus 153 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~~i~~~l~-~~~~~ 227 (873)
.+.++..+.+ ++..-++|+|+.|+|||||.+.+..... .....+++. +...... .+++.... .+...
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhH----HHHHHHhccccccc
Confidence 3444444443 4567899999999999999999998762 222233331 1110011 22322221 11110
Q ss_pred c----cccCHHHHHHHHHHHhc-cCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhh
Q 002863 228 W----KNKSMQEKAQQIFNILS-KKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVC 289 (873)
Q Consensus 228 ~----~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~ 289 (873)
. +..+.......+...+. ..+-++++|.+.....+..+...+ ..|..||+||.+..+.
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~----~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL----HAGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----hCCCEEEEEechhHHH
Confidence 0 00111112333444443 578899999997666555554443 2467899999876553
No 279
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.09 E-value=0.025 Score=54.85 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=64.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc------------cccc
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES------------WKNK 231 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------~~~~ 231 (873)
.-.+++|.|+.|+|||||++.++..... -...+++.-. ++......+...++..... ...-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP----QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC----CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 4458999999999999999999887511 1222332211 1111111111122110000 0111
Q ss_pred C-HHHHHHHHHHHhccCCeEEEEecccccccc---ccccccCCCCCCCCcEEEEEccchhhhhccccccceee
Q 002863 232 S-MQEKAQQIFNILSKKKFVLLLDDMWELVDL---DQVGLPIPSRTSVSNKVVFTTREFEVCGQMEAHRSFKV 300 (873)
Q Consensus 232 ~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 300 (873)
+ -+...-.+...+-.++-++++|+....-|. +.+...+... ..+..||++|.+.+.... +.+.+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1 122233344556678889999998654332 2222222221 235678888888766542 3444444
No 280
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.08 E-value=0.0064 Score=67.61 Aligned_cols=45 Identities=22% Similarity=0.365 Sum_probs=39.8
Q ss_pred cccchhHHHHHHHHHHh------cCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQLTFDRVWRCLM------EEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+++|.++.++++++.|. +...+++.++|++|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 47999999999999983 3456799999999999999999999876
No 281
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.06 E-value=0.031 Score=56.22 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=74.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC-----cccHHHHHHHHHHHhCCCCccc-----cccCH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-----DLQLEKIQEIIAKKIGLFNESW-----KNKSM 233 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~~-----~~~~~ 233 (873)
...+++|+|..|+||||+++.+..-. ..-...+++...+ .....+-..++++..|+..+.. +-..-
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45699999999999999999998865 1222233333211 2223445666777777543210 11222
Q ss_pred HHHHHHHHHHhccCCeEEEEecccccccc---ccccccCCCC-CCCCcEEEEEccchhhhhcccc
Q 002863 234 QEKAQQIFNILSKKKFVLLLDDMWELVDL---DQVGLPIPSR-TSVSNKVVFTTREFEVCGQMEA 294 (873)
Q Consensus 234 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~~~~~l~~~-~~~gs~iivTtR~~~v~~~~~~ 294 (873)
+...-.+.+.|.-++-++|.|..-...|. .++...+.+- ...|-..++.|-+-.|+..+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 22333456777889999999997654332 2222222110 1346678888888888776543
No 282
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.06 E-value=0.023 Score=61.03 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=52.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC-cccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-DLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN 242 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (873)
...+++++|+.|+||||++.++.... ..+.....+..++... .....+-++...+.++.+... ..+..+....+ .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l-~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL-A 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH-H
Confidence 34699999999999999999998875 1121223455555332 123455666667777764321 12222332222 3
Q ss_pred HhccCCeEEEEeccc
Q 002863 243 ILSKKKFVLLLDDMW 257 (873)
Q Consensus 243 ~l~~k~~LlVlDdv~ 257 (873)
.+.++ -++++|...
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 34444 456689874
No 283
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.05 E-value=0.01 Score=71.92 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=37.6
Q ss_pred CCcccchhHHHHHHHHHHhc-------C--CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 143 PPTVVGLQLTFDRVWRCLME-------E--HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...++|-+..++.+.+.+.. . ...++.++|+.|+|||+||+.+++..
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 35678999999999888752 1 23467789999999999999998875
No 284
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.05 E-value=0.021 Score=54.91 Aligned_cols=125 Identities=17% Similarity=0.163 Sum_probs=64.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccC--CC---CCc--eEEEEEeCCcccHHHHHHHHHHHhCCCCc----cccccC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDT--PN---HFD--FVIWVVVSRDLQLEKIQEIIAKKIGLFNE----SWKNKS 232 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~ 232 (873)
.-.+++|+|+.|+|||||.+.+..+.-.+ .. .|. .+.|+ .+ .+.++.+++... ....-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999886431010 00 111 12232 21 456666665321 111112
Q ss_pred H-HHHHHHHHHHhccC--CeEEEEeccccccc---cccccccCCCCCCCCcEEEEEccchhhhhccccccceee
Q 002863 233 M-QEKAQQIFNILSKK--KFVLLLDDMWELVD---LDQVGLPIPSRTSVSNKVVFTTREFEVCGQMEAHRSFKV 300 (873)
Q Consensus 233 ~-~~~~~~l~~~l~~k--~~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 300 (873)
. +...-.+...+-.+ +-++++|+.-..-| .+.+...+......|..||++|.+.+.... +.+.+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1 22233344555556 78889999754332 222222222210246678888888766542 3444444
No 285
>PRK06547 hypothetical protein; Provisional
Probab=96.03 E-value=0.0094 Score=57.03 Aligned_cols=35 Identities=29% Similarity=0.211 Sum_probs=28.4
Q ss_pred HHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 155 RVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 155 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+...+......+|+|.|++|+||||+|+.+....
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444555678899999999999999999998865
No 286
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.02 E-value=0.018 Score=56.91 Aligned_cols=131 Identities=17% Similarity=0.169 Sum_probs=71.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEE----------------------eCCcc-------------
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV----------------------VSRDL------------- 208 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~----------------------~s~~~------------- 208 (873)
.-.+|+|+|+.|+|||||...+..-... -...+++. +-|.+
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~p----t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKP----TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC----CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 3458999999999999999987653311 11111111 11111
Q ss_pred -----------cHHHHHHHHHHHhCCCCcc----c-cccCHHHHHHHHHHHhccCCeEEEEeccccccc---cccccccC
Q 002863 209 -----------QLEKIQEIIAKKIGLFNES----W-KNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD---LDQVGLPI 269 (873)
Q Consensus 209 -----------~~~~~~~~i~~~l~~~~~~----~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l 269 (873)
...+....+++.+++.... + +-+.-++..-.+.+.|-..+-+|+-|+--..-| -+.+...+
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 1123345556666654211 1 222334444556677888889999998532211 11111111
Q ss_pred CC-CCCCCcEEEEEccchhhhhccccccceee
Q 002863 270 PS-RTSVSNKVVFTTREFEVCGQMEAHRSFKV 300 (873)
Q Consensus 270 ~~-~~~~gs~iivTtR~~~v~~~~~~~~~~~l 300 (873)
.. ....|..||+.|.+..+|..+ .+.|.+
T Consensus 186 ~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 186 RELNKERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 11 113477899999999998864 344444
No 287
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.023 Score=57.68 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=48.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccC--CCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDT--PNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN 242 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (873)
-++|.++|++|.|||+|.+++++.. .+ ...+....-+.++.. .++.+-... ..+-...+.+++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEinsh----sLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINSH----SLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEehh----HHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 4789999999999999999999987 33 233333333333321 222221111 23345556667777
Q ss_pred HhccCCe--EEEEecccc
Q 002863 243 ILSKKKF--VLLLDDMWE 258 (873)
Q Consensus 243 ~l~~k~~--LlVlDdv~~ 258 (873)
.++++.. .+.+|.|..
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 7766544 445688853
No 288
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.01 E-value=0.033 Score=61.23 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=48.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc-ccHHHHHHHHHHHhCCCCcc-ccccCHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQEIIAKKIGLFNES-WKNKSMQEKAQQIF 241 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 241 (873)
...++.++|.+|+||||.|..++... ..+..+ .++.|++... +...+-++...+..+.+.-. ....++.+......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 46799999999999999998887764 111222 2333433321 11233344455555543211 11233444444444
Q ss_pred HHhccCCe-EEEEeccc
Q 002863 242 NILSKKKF-VLLLDDMW 257 (873)
Q Consensus 242 ~~l~~k~~-LlVlDdv~ 257 (873)
+....+.+ ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 44433444 66666653
No 289
>PRK10867 signal recognition particle protein; Provisional
Probab=96.00 E-value=0.034 Score=61.17 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|.++|++|+||||.|..++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999888887765
No 290
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.092 Score=58.11 Aligned_cols=151 Identities=18% Similarity=0.238 Sum_probs=88.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL 244 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (873)
..=|.+||++|+|||-||++|+|.. +..| ++|-.. +++..- ... .+..++.+.++-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY-----------VGE-SErAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY-----------VGE-SERAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH-----------hhh-HHHHHHHHHHHh
Confidence 4567799999999999999999986 4444 444332 222211 111 123333444433
Q ss_pred -ccCCeEEEEeccccc-------ccc------ccccccCCCC-CCCCcEEEEEccchhhhhc-c----ccccceeeccCC
Q 002863 245 -SKKKFVLLLDDMWEL-------VDL------DQVGLPIPSR-TSVSNKVVFTTREFEVCGQ-M----EAHRSFKVECLR 304 (873)
Q Consensus 245 -~~k~~LlVlDdv~~~-------~~~------~~~~~~l~~~-~~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~ 304 (873)
..-+++|.+|.++.. ..| .++..-+... ...|.-||-.|..+++... + .-.+..-++.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 457999999999642 111 1222222211 1456677877777766322 1 124566778888
Q ss_pred hhhhHHHHHHHhcC--CCCCCCCChHHHHHHHHHHhCCc
Q 002863 305 YDDAWKLFELKVGA--DTLDSHPDIPELAETLAKDCGGL 341 (873)
Q Consensus 305 ~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~gl 341 (873)
.+|-.++++..... .....+-++++|++. .+|.|.
T Consensus 681 ~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 681 AEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 89999999988873 223344566666553 355554
No 291
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.99 E-value=0.048 Score=55.61 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=34.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEII 217 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 217 (873)
..+++.|.|.+|+|||++|.++.... ...-+.++||+... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHH
Confidence 46799999999999999998865543 12235678887665 445555543
No 292
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.0083 Score=54.66 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=22.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-|+|.|++|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999887
No 293
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.98 E-value=0.033 Score=57.39 Aligned_cols=33 Identities=30% Similarity=0.316 Sum_probs=27.8
Q ss_pred HHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 157 WRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 157 ~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+++.+.+..+|.|+|.+|+|||||+..+.+..
T Consensus 96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334445678999999999999999999999876
No 294
>PHA00729 NTP-binding motif containing protein
Probab=95.97 E-value=0.0099 Score=58.71 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=28.6
Q ss_pred HHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 155 RVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 155 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
++++.+...+...|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555666666789999999999999999998874
No 295
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.96 E-value=0.018 Score=59.50 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=58.2
Q ss_pred cchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCc
Q 002863 147 VGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNE 226 (873)
Q Consensus 147 vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 226 (873)
.|...+..+.+..+.....++|.|.|+.|+||||++..+.+... ..-..++.+.-...+....+ .+...
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~~-----~q~~v--- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPGI-----NQVQV--- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCCc-----eEEEe---
Confidence 45444444444444445557899999999999999998876541 11112332221111111100 11111
Q ss_pred cccccCHHHHHHHHHHHhccCCeEEEEeccccccccc
Q 002863 227 SWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVDLD 263 (873)
Q Consensus 227 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 263 (873)
...........++..++..+=.++++++.+.....
T Consensus 131 --~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 131 --NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred --CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 11111234566777888889999999998876544
No 296
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.96 E-value=0.022 Score=56.02 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 153 FDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 153 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+.+..+...+-+++.|.|++|+||||+++.+....
T Consensus 6 Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 6 QREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 3444555544555788899999999999999988776
No 297
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.94 E-value=0.0091 Score=55.11 Aligned_cols=43 Identities=26% Similarity=0.286 Sum_probs=31.2
Q ss_pred cchhHHHHHHHHHHhc--CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 147 VGLQLTFDRVWRCLME--EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 147 vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
||+-..++++.+.+.. ....-|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666677777766653 344567899999999999999988875
No 298
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.93 E-value=0.014 Score=55.64 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=61.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC--cccHHHHHHHHHHHhCCCCccccccCHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR--DLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIF 241 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 241 (873)
.-.+++|+|+.|+|||||.+.++... ......+++.-.. ..+..+. ....++... +-..-+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHHH
Confidence 34589999999999999999998865 2233444442111 1111111 111122110 1122233333455
Q ss_pred HHhccCCeEEEEeccccccc---cccccccCCCCCCCCcEEEEEccchhhh
Q 002863 242 NILSKKKFVLLLDDMWELVD---LDQVGLPIPSRTSVSNKVVFTTREFEVC 289 (873)
Q Consensus 242 ~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~iivTtR~~~v~ 289 (873)
..+-.++-++++|+.-..-| ...+...+......|..||++|.+.+..
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 56667888999999865433 2222222221102356788888876543
No 299
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.92 E-value=0.057 Score=57.76 Aligned_cols=58 Identities=24% Similarity=0.434 Sum_probs=41.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCC----CceEEEEEeCCcccHHHHHHHHHHHhCC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNH----FDFVIWVVVSRDLQLEKIQEIIAKKIGL 223 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 223 (873)
...++-|+|++|+|||+++.+++-.. ..... =..++||+....+++.++.+ +++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 45789999999999999999887654 11111 14799999988888777654 4455553
No 300
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.88 E-value=0.012 Score=59.21 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=62.8
Q ss_pred hhHHHHhHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHh
Q 002863 11 CDDTISRCLHCTVRKARYVCNLQDNIHSLQEELRRLTEVRNDVKIRIIVAEQQQMKPLEQVHGWLSRVQEVETKVEKLKE 90 (873)
Q Consensus 11 ~~~~~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~v~~Wl~~~~~~~~d~ed~~d 90 (873)
++.+++.|-.+..+....+..++.+++-++.|++.||.||+++ ++....+. +.......++...||++|+++|
T Consensus 298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh-~~~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKH-DTNEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhh-hhhhhHHHHHHHHHhheeeeee
Confidence 5778888998888888888899999999999999999999996 55533333 3388999999999999999999
No 301
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.88 E-value=0.0085 Score=57.80 Aligned_cols=74 Identities=24% Similarity=0.365 Sum_probs=42.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI 243 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (873)
+..-+.++|..|+|||.||.++.+...+ ..+ .+.|+ +..+++..+-..- ....... +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~-~v~f~------~~~~L~~~l~~~~-------~~~~~~~----~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR--KGY-SVLFI------TASDLLDELKQSR-------SDGSYEE----LLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH--TT---EEEE------EHHHHHHHHHCCH-------CCTTHCH----HHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc--CCc-ceeEe------ecCceeccccccc-------cccchhh----hcCc
Confidence 3456899999999999999999887622 333 34555 3445555553221 1112222 2233
Q ss_pred hccCCeEEEEecccc
Q 002863 244 LSKKKFVLLLDDMWE 258 (873)
Q Consensus 244 l~~k~~LlVlDdv~~ 258 (873)
+. +-=||||||+..
T Consensus 106 l~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LK-RVDLLILDDLGY 119 (178)
T ss_dssp HH-TSSCEEEETCTS
T ss_pred cc-cccEecccccce
Confidence 33 345788999964
No 302
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.87 E-value=0.036 Score=57.97 Aligned_cols=88 Identities=24% Similarity=0.268 Sum_probs=48.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-cHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN 242 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (873)
..++++|+|++|+||||++..++... ..+..-..+..|+..... ...+.+....+.++.+.. ...+..++...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 45699999999999999999988776 222111245556544321 223333444444554321 1233444433333
Q ss_pred HhccCCeEEEEecc
Q 002863 243 ILSKKKFVLLLDDM 256 (873)
Q Consensus 243 ~l~~k~~LlVlDdv 256 (873)
.+.+ .=+|++|..
T Consensus 269 ~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLRD-KDLILIDTA 281 (282)
T ss_pred HccC-CCEEEEeCC
Confidence 3333 347777764
No 303
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.87 E-value=0.041 Score=64.64 Aligned_cols=169 Identities=17% Similarity=0.137 Sum_probs=87.7
Q ss_pred cccchhHHHHHHHH---HHhcC---------CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHH
Q 002863 145 TVVGLQLTFDRVWR---CLMEE---------HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEK 212 (873)
Q Consensus 145 ~~vgr~~~~~~l~~---~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 212 (873)
++.|.+...+++.+ ++.+. -.+-|.++|++|+||||+|+.+++.. ...| +.+..++
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------ 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------
Confidence 35676655555444 33221 12348899999999999999998876 2232 2222221
Q ss_pred HHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccc------------c----ccccccCCCC-CCC
Q 002863 213 IQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD------------L----DQVGLPIPSR-TSV 275 (873)
Q Consensus 213 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------------~----~~~~~~l~~~-~~~ 275 (873)
+.. + ..+ .........+.......+.+|++|+++.... . ..+...+... ...
T Consensus 221 ~~~-~--~~g--------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 FVE-M--FVG--------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hHH-h--hhc--------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 111 0 001 1112222222233345789999999864310 1 1111111111 023
Q ss_pred CcEEEEEccchhhhhc-c----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCC
Q 002863 276 SNKVVFTTREFEVCGQ-M----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGG 340 (873)
Q Consensus 276 gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g 340 (873)
+.-||.||...+.... . .....+.+...+.++-.++++.+..........++ ..+++.+.|
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~----~~la~~t~G 355 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA----AIIARGTPG 355 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCH----HHHHhhCCC
Confidence 4455667776654221 1 12456788888888888888887755432222232 346666666
No 304
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.85 E-value=0.056 Score=52.80 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=35.8
Q ss_pred CcccchhHHHHHHHHHH----hcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCL----MEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..++|.+..++.+++-- ......-|.+||.-|+|||.|++++.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 35799888887776533 22234567899999999999999999987
No 305
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.85 E-value=0.04 Score=59.69 Aligned_cols=85 Identities=22% Similarity=0.337 Sum_probs=50.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc---cccCHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW---KNKSMQEKAQQI 240 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (873)
...++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++ +.-++.++...+.. ...+.+...+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 356999999999999999999987762 22245777765433 3333 22245555432211 122333333332
Q ss_pred HHHhccCCeEEEEeccc
Q 002863 241 FNILSKKKFVLLLDDMW 257 (873)
Q Consensus 241 ~~~l~~k~~LlVlDdv~ 257 (873)
. +.+.-+||+|.+.
T Consensus 155 ~---~~~~~lVVIDSIq 168 (372)
T cd01121 155 E---ELKPDLVIIDSIQ 168 (372)
T ss_pred H---hcCCcEEEEcchH
Confidence 2 2466788889873
No 306
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.84 E-value=0.052 Score=47.96 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=34.3
Q ss_pred cccchhHHHHHHHHHHhc-------CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQLTFDRVWRCLME-------EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.++|-.-..+.+++++.+ ++.-|++.+|.+|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 467766666666666542 356799999999999999999888873
No 307
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.82 E-value=0.034 Score=53.14 Aligned_cols=117 Identities=12% Similarity=0.116 Sum_probs=61.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCC--Cc---eEEEEEeCCcccH--HHHHHHHHHHhCCCCccccccCHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FD---FVIWVVVSRDLQL--EKIQEIIAKKIGLFNESWKNKSMQEK 236 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f~---~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~ 236 (873)
.-.+++|+|+.|+|||||++.+.......... ++ .+.+ +.+.... ..+.+.+... .. ..-..-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~--~~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WD--DVLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CC--CCCCHHHHH
Confidence 44589999999999999999998875211111 11 1222 2232211 1233332210 11 012222333
Q ss_pred HHHHHHHhccCCeEEEEecccccccc---ccccccCCCCCCCCcEEEEEccchhhhh
Q 002863 237 AQQIFNILSKKKFVLLLDDMWELVDL---DQVGLPIPSRTSVSNKVVFTTREFEVCG 290 (873)
Q Consensus 237 ~~~l~~~l~~k~~LlVlDdv~~~~~~---~~~~~~l~~~~~~gs~iivTtR~~~v~~ 290 (873)
.-.+...+-.++=++++|+--..-|. ..+...+... +..||++|.+.+...
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~~ 152 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHHh
Confidence 44455666678888999987544332 2222222221 356888888766543
No 308
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.79 E-value=0.02 Score=55.20 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=62.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC--cccHHHHHHHHHHHhCCCCccc---c-------cc
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR--DLQLEKIQEIIAKKIGLFNESW---K-------NK 231 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~---~-------~~ 231 (873)
.-.+++|+|+.|+|||||++.++... . .....+++.-.. ........ ..++...... . -.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS 98 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL-R---PTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILS 98 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-C---CCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcC
Confidence 34589999999999999999998865 1 122223321100 11111111 1121111000 0 01
Q ss_pred CHHHHHHHHHHHhccCCeEEEEeccccccc---cccccccCCCCCCCCcEEEEEccchhhhhccccccceee
Q 002863 232 SMQEKAQQIFNILSKKKFVLLLDDMWELVD---LDQVGLPIPSRTSVSNKVVFTTREFEVCGQMEAHRSFKV 300 (873)
Q Consensus 232 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 300 (873)
.-+...-.+...+-.++-+++||+.-..-| ...+...+......|..||++|.+.+.... +.+.+.+
T Consensus 99 ~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~--~d~v~~l 168 (173)
T cd03246 99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS--ADRILVL 168 (173)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 112222334455666777999999865433 222222221110235678888887765542 3444444
No 309
>PRK07667 uridine kinase; Provisional
Probab=95.78 E-value=0.013 Score=57.53 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=29.5
Q ss_pred HHHHHHHHhc--CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 153 FDRVWRCLME--EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 153 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+++.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666643 455799999999999999999998876
No 310
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.76 E-value=0.0079 Score=54.67 Aligned_cols=22 Identities=36% Similarity=0.788 Sum_probs=20.0
Q ss_pred EEEEeCCCCcHHHHHHHHHhhh
Q 002863 168 VGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 168 i~I~G~gGiGKTtLa~~v~~~~ 189 (873)
|+|.|++|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998873
No 311
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.76 E-value=0.025 Score=59.50 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=24.5
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-...++|||++|+|||.+|+++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999999987
No 312
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.76 E-value=0.014 Score=59.28 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=24.4
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+...+|+|.|+.|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999998876
No 313
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.1 Score=51.28 Aligned_cols=195 Identities=14% Similarity=0.155 Sum_probs=101.4
Q ss_pred CCCCCCCC--CcccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEE
Q 002863 136 PVDERPLP--PTVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVI 200 (873)
Q Consensus 136 ~~~~~~~~--~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~ 200 (873)
.++++|++ +++=|-+..++++++++.= ...+-|..||++|.|||-+|++.+... ...|-..+
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFLKLA 237 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFLKLA 237 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHHHhc
Confidence 34555554 3567889999999998741 134567899999999999999987764 33331110
Q ss_pred EEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhc-cCCeEEEEeccccc----ccc------------c
Q 002863 201 WVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS-KKKFVLLLDDMWEL----VDL------------D 263 (873)
Q Consensus 201 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----~~~------------~ 263 (873)
.--+-|+.+ .+...+.+.-....+ ..+.+|.+|.++.. .+- -
T Consensus 238 --------------gPQLVQMfI-------GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTML 296 (424)
T KOG0652|consen 238 --------------GPQLVQMFI-------GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTML 296 (424)
T ss_pred --------------chHHHhhhh-------cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHH
Confidence 000111111 111223333333333 46888999987531 111 1
Q ss_pred cccccCCCC-CCCCcEEEEEccchhhh-----hccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHH
Q 002863 264 QVGLPIPSR-TSVSNKVVFTTREFEVC-----GQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKD 337 (873)
Q Consensus 264 ~~~~~l~~~-~~~gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~ 337 (873)
++...+... .....|||..|..-++. ++-.-...|+.+.-+++.-..+++-+........+.+++++++.--.-
T Consensus 297 ELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddF 376 (424)
T KOG0652|consen 297 ELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDF 376 (424)
T ss_pred HHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhccccc
Confidence 111222211 02345788777655553 222234556666555555555666666655555666776666543221
Q ss_pred hCCchhHHHHHHHHHhc
Q 002863 338 CGGLPLALITVGRAMAS 354 (873)
Q Consensus 338 c~glPLai~~~~~~l~~ 354 (873)
-|.--.|+.+=|+.+.-
T Consensus 377 NGAQcKAVcVEAGMiAL 393 (424)
T KOG0652|consen 377 NGAQCKAVCVEAGMIAL 393 (424)
T ss_pred CchhheeeehhhhHHHH
Confidence 12222344444554443
No 314
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.74 E-value=0.04 Score=53.00 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=63.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC--cccHHHHHHHHHHHhCCCCcc--ccc-------cC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR--DLQLEKIQEIIAKKIGLFNES--WKN-------KS 232 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~--~~~-------~~ 232 (873)
.-.+++|+|+.|.|||||++.++.-. . .....+++.-.. ....... ...++..... ... -+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~-~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY-D---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC-C---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhC
Confidence 44689999999999999999998875 1 222333322110 0011111 1112110000 000 01
Q ss_pred -HHHHHHHHHHHhccCCeEEEEeccccccc---cccccccCCCCCCCCcEEEEEccchhhhhccccccceee
Q 002863 233 -MQEKAQQIFNILSKKKFVLLLDDMWELVD---LDQVGLPIPSRTSVSNKVVFTTREFEVCGQMEAHRSFKV 300 (873)
Q Consensus 233 -~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 300 (873)
-+...-.+...+-.++-+++||+-...-| .+.+...+... ..+..||++|.+.+.... +.+.+.+
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11222234455667888999999865433 22222222222 224678888888766543 3444444
No 315
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.73 E-value=0.065 Score=54.61 Aligned_cols=88 Identities=13% Similarity=0.191 Sum_probs=54.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc----------------
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES---------------- 227 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------------- 227 (873)
..+++.|+|.+|+||||+|.++.... ...=..++|++..+. +.++.+.+ ++++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 46799999999999999999986543 112346888888654 44555543 334432110
Q ss_pred --ccccCHHHHHHHHHHHhcc-CCeEEEEeccc
Q 002863 228 --WKNKSMQEKAQQIFNILSK-KKFVLLLDDMW 257 (873)
Q Consensus 228 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 257 (873)
+...+.+.....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335556666666653 55688889874
No 316
>PRK14974 cell division protein FtsY; Provisional
Probab=95.70 E-value=0.095 Score=55.76 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=50.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCccc--HHHHHHHHHHHhCCCCcc-ccccCHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ--LEKIQEIIAKKIGLFNES-WKNKSMQEKAQQI 240 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l 240 (873)
...+|.++|++|+||||++..++... . ...+. ++.+. .+.+. ..+-++..+..++.+... ....++...+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~-~~g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-K-KNGFS-VVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCe-EEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 46799999999999999988888766 2 22332 33343 23332 334456667777753211 1222333332222
Q ss_pred HHHh-ccCCeEEEEecccc
Q 002863 241 FNIL-SKKKFVLLLDDMWE 258 (873)
Q Consensus 241 ~~~l-~~k~~LlVlDdv~~ 258 (873)
.+.. ....=++++|-+..
T Consensus 215 i~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 2222 22223888898754
No 317
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.68 E-value=0.063 Score=55.83 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=22.9
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
....+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998876554
No 318
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.67 E-value=0.026 Score=66.78 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=37.2
Q ss_pred CcccchhHHHHHHHHHHhc---------CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLME---------EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..++|-++.++.+.+.+.. .....+.++|++|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478989988888888762 124578899999999999999998876
No 319
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.66 E-value=0.0092 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 320
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.65 E-value=0.021 Score=54.93 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 321
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.65 E-value=0.089 Score=56.21 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=42.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccC---C-CCCceEEEEEeCCcccHHHHHHHHHHHhCCC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDT---P-NHFDFVIWVVVSRDLQLEKIQEIIAKKIGLF 224 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 224 (873)
...++-|+|.+|+|||+++..++-.. .. . ..-..++||+....|.++++. +|++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 45788899999999999998877543 11 1 111269999999998887764 556666653
No 322
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.65 E-value=0.074 Score=51.33 Aligned_cols=125 Identities=19% Similarity=0.188 Sum_probs=69.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEe-------------------CCcc----------------
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV-------------------SRDL---------------- 208 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~-------------------s~~~---------------- 208 (873)
...|++|+|+.|+|||||.+.+..-. .. =...+||.- -+.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE-~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE-EP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc-CC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 44599999999999999999887654 21 123344421 0111
Q ss_pred ---------cHHHHHHHHHHHhCCCCcc--c--cccCHHHHHHHHHHHhccCCeEEEEeccccccccccc---cccCCCC
Q 002863 209 ---------QLEKIQEIIAKKIGLFNES--W--KNKSMQEKAQQIFNILSKKKFVLLLDDMWELVDLDQV---GLPIPSR 272 (873)
Q Consensus 209 ---------~~~~~~~~i~~~l~~~~~~--~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~---~~~l~~~ 272 (873)
..++...++++..|+.... + .-+.-++..-.|.+.|.-++-++.+|..-+.-|-+-+ ...+..-
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 1233444455555553210 0 1122334444567778888899999998765443222 1111111
Q ss_pred CCCCcEEEEEccchhhhhcc
Q 002863 273 TSVSNKVVFTTREFEVCGQM 292 (873)
Q Consensus 273 ~~~gs~iivTtR~~~v~~~~ 292 (873)
-..|-..|+.|.....|+..
T Consensus 183 A~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 183 AEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHcCCeEEEEechhHHHHHh
Confidence 14566677777766655543
No 323
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.64 E-value=0.045 Score=53.18 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=65.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEE---eCCcccHHHHHH------HHHHHhCCCCc---ccccc
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV---VSRDLQLEKIQE------IIAKKIGLFNE---SWKNK 231 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~------~i~~~l~~~~~---~~~~~ 231 (873)
.-.+++|+|+.|+|||||++.++... ......+++. +.. .+...... ++++.+++... ....-
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 44699999999999999999998865 1223333332 221 12222111 14555555321 01111
Q ss_pred -CHHHHHHHHHHHhccCCeEEEEeccccccc---cccccccCCCCCCC-CcEEEEEccchhhh
Q 002863 232 -SMQEKAQQIFNILSKKKFVLLLDDMWELVD---LDQVGLPIPSRTSV-SNKVVFTTREFEVC 289 (873)
Q Consensus 232 -~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~-gs~iivTtR~~~v~ 289 (873)
.-+...-.+...+-..+-++++|+.-..-| .+.+...+...... +..||++|.+.+..
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 222333345566677889999999754333 22222222211022 56788888876543
No 324
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.63 E-value=0.017 Score=63.48 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=37.5
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..++||++.++.+...+..+. -|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh
Confidence 358999999999988876543 57789999999999999999876
No 325
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.044 Score=63.69 Aligned_cols=152 Identities=17% Similarity=0.241 Sum_probs=86.3
Q ss_pred cccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCc-----eEEEEEeCCcccHHHHHHHHHH
Q 002863 145 TVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD-----FVIWVVVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-----~~~wv~~s~~~~~~~~~~~i~~ 219 (873)
.++||+++++++++.|....-.--.++|.+|+|||++|.-++.+.. .+.-+ ..++. .|+..+ ..
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~~L~~~~i~s-----LD~g~L----vA 239 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPESLKDKRIYS-----LDLGSL----VA 239 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCHHHcCCEEEE-----ecHHHH----hc
Confidence 3799999999999999754222234689999999999988877651 22111 11110 011111 10
Q ss_pred HhCCCCccccccCHHHHHHHHHHHhc-cCCeEEEEecccccc----------ccccc-cccCCCCCCCCcEEEEEccchh
Q 002863 220 KIGLFNESWKNKSMQEKAQQIFNILS-KKKFVLLLDDMWELV----------DLDQV-GLPIPSRTSVSNKVVFTTREFE 287 (873)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------~~~~~-~~~l~~~~~~gs~iivTtR~~~ 287 (873)
| .+ -..+.++..+.+.+.++ .++..|++|.++... |-..+ .+.+.. +. -+.|-.|--.+
T Consensus 240 --G---ak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--Ge-L~~IGATT~~E 310 (786)
T COG0542 240 --G---AK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GE-LRCIGATTLDE 310 (786)
T ss_pred --c---cc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CC-eEEEEeccHHH
Confidence 1 11 22345666666666554 458999999987521 11222 333332 22 34554443333
Q ss_pred hhhcc-------ccccceeeccCChhhhHHHHHHHh
Q 002863 288 VCGQM-------EAHRSFKVECLRYDDAWKLFELKV 316 (873)
Q Consensus 288 v~~~~-------~~~~~~~l~~L~~~e~~~lf~~~~ 316 (873)
.-..+ ...+.+.++..+.+++..+++-..
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 22111 234678899999999999887543
No 326
>PRK08233 hypothetical protein; Provisional
Probab=95.59 E-value=0.011 Score=57.73 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999876
No 327
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.064 Score=57.37 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=50.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc-ccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN 242 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (873)
..++|+++|++|+||||++..++... . ...+ .+..++.... ....+-++..++.++.+.. ...+...+.+.+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~-~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H-GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H-HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 34799999999999999999998776 2 2222 3444544322 1223334445555554321 23355555554444
Q ss_pred Hhcc-CCeEEEEeccc
Q 002863 243 ILSK-KKFVLLLDDMW 257 (873)
Q Consensus 243 ~l~~-k~~LlVlDdv~ 257 (873)
.-.. +.=+|++|-..
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3221 23467778764
No 328
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.56 E-value=0.037 Score=54.82 Aligned_cols=97 Identities=22% Similarity=0.340 Sum_probs=57.0
Q ss_pred HHHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc-ccHHHHHHHHHHHhCCCCc----ccc
Q 002863 156 VWRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQEIIAKKIGLFNE----SWK 229 (873)
Q Consensus 156 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~ 229 (873)
.++.+.. ..-.-++|.|.+|+|||+|+..+.+.. .-+.++++.+.+. ....++.+++...-..... ...
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~ 79 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS 79 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc
Confidence 3444432 234578999999999999999999886 2344578888765 3566666666443111110 001
Q ss_pred ccCHHHH------HHHHHHHh--ccCCeEEEEeccc
Q 002863 230 NKSMQEK------AQQIFNIL--SKKKFVLLLDDMW 257 (873)
Q Consensus 230 ~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 257 (873)
+...... .-.+-+++ +++.+|+++||+-
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhH
Confidence 1111111 11122333 6899999999983
No 329
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.54 E-value=0.032 Score=50.64 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=34.7
Q ss_pred CCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC--CC-CccccCcccCCEEecCCCCCCccchh-hhcCCCCcEe
Q 002863 525 SPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS--DL-PCEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCL 600 (873)
Q Consensus 525 ~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n--~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L 600 (873)
+++|+.+.+.. .+..+. ...|.++++|+.+.+.++ .+ ...+.++.+|+++.+.+ .+..++.. +..+++|+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~--~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIG--ENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T--EE---TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-CeeEeC--hhhcccccccccccccccccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 33444444442 233344 344555555555555443 12 12334444455555543 33333322 3445555555
Q ss_pred eccccccccccChhhhCCCcccceEecc
Q 002863 601 NLEYTFRLSRISPQVISNLKMLRVLRMF 628 (873)
Q Consensus 601 ~L~~~~~l~~l~~~~i~~l~~L~~L~l~ 628 (873)
++..+ +..++...+.++ +|+.+.+.
T Consensus 87 ~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 87 DIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 55432 344444445554 55555544
No 330
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.54 E-value=0.098 Score=53.09 Aligned_cols=53 Identities=26% Similarity=0.272 Sum_probs=34.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
...++.|.|.+|+||||+|.++..... ..-..++|++.... ..++.+. +++++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~--~~~i~~~-~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES--RESIIRQ-AAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC--HHHHHHH-HHHhC
Confidence 457999999999999999998765431 12346788876443 3444333 44444
No 331
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.54 E-value=0.059 Score=56.55 Aligned_cols=88 Identities=17% Similarity=0.190 Sum_probs=53.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc---cccCHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW---KNKSMQEKAQQI 240 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (873)
..+++-|+|+.|+||||||..+.... ++.-...+||.....+++. .++++|+..+.. ...+.++..+.+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 35699999999999999999888776 2234578999998877653 344556543321 233445555555
Q ss_pred HHHhcc-CCeEEEEeccccc
Q 002863 241 FNILSK-KKFVLLLDDMWEL 259 (873)
Q Consensus 241 ~~~l~~-k~~LlVlDdv~~~ 259 (873)
...++. .--++|+|-|-..
T Consensus 124 e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT-
T ss_pred HHHhhcccccEEEEecCccc
Confidence 555543 4458899998543
No 332
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.51 E-value=0.012 Score=54.70 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
||.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998775
No 333
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.18 Score=57.82 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=75.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI 243 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (873)
..+.+-++|++|.|||.||+++++.. ...|-.+.+ . .+.. .+-..+...........
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~----~l~s-----------k~vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S----ELLS-----------KWVGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H----HHhc-----------cccchHHHHHHHHHHHH
Confidence 45588899999999999999999965 334432221 1 1110 01112222222223333
Q ss_pred hccCCeEEEEecccccccc-------------ccccccCCCC-CCCCcEEEEEccchhhhhc-----cccccceeeccCC
Q 002863 244 LSKKKFVLLLDDMWELVDL-------------DQVGLPIPSR-TSVSNKVVFTTREFEVCGQ-----MEAHRSFKVECLR 304 (873)
Q Consensus 244 l~~k~~LlVlDdv~~~~~~-------------~~~~~~l~~~-~~~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~ 304 (873)
.+..+..|.+|+++....+ .++...+... ...+..||-||-....... ..-...+.+..-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 3578999999999643111 1222222211 0233345555554433221 1235578899999
Q ss_pred hhhhHHHHHHHhcCCC
Q 002863 305 YDDAWKLFELKVGADT 320 (873)
Q Consensus 305 ~~e~~~lf~~~~~~~~ 320 (873)
.++..+.|+.+.....
T Consensus 412 ~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 412 LEERLEIFKIHLRDKK 427 (494)
T ss_pred HHHHHHHHHHHhcccC
Confidence 9999999999886433
No 334
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.50 E-value=0.066 Score=57.17 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=41.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCC----CCceEEEEEeCCcccHHHHHHHHHHHhCC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPN----HFDFVIWVVVSRDLQLEKIQEIIAKKIGL 223 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 223 (873)
...++-|+|.+|+||||++.+++-.. .... .=..++||+....++..++. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 45789999999999999999887664 2110 11279999998888877654 44555554
No 335
>PTZ00301 uridine kinase; Provisional
Probab=95.49 E-value=0.012 Score=58.19 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=22.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999988765
No 336
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.49 E-value=0.065 Score=52.73 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=28.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCC-------ceEEEEEeCCc
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHF-------DFVIWVVVSRD 207 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-------~~~~wv~~s~~ 207 (873)
.++.|+|++|+||||++..+..........| ..++|+.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 4888999999999999998887763222222 26778776665
No 337
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.48 E-value=0.076 Score=57.66 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=53.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCC-CCCceEEEEEeCCc-ccHHHHHHHHHHHhCCCCccccccCHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTP-NHFDFVIWVVVSRD-LQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIF 241 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 241 (873)
..++|.++|+.|+||||.+..++....... ..-..+..+++... .....-++..++.++.+.. ...+..+....+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357999999999999999998887762111 11224555554432 1223346666777776432 2234444444443
Q ss_pred HHhccCCeEEEEeccc
Q 002863 242 NILSKKKFVLLLDDMW 257 (873)
Q Consensus 242 ~~l~~k~~LlVlDdv~ 257 (873)
.. .+.-++++|.+.
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 32 345688889874
No 338
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.2 Score=49.04 Aligned_cols=165 Identities=15% Similarity=0.239 Sum_probs=90.0
Q ss_pred ccc-hhHHHHHHHHHHh---c----------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 146 VVG-LQLTFDRVWRCLM---E----------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 146 ~vg-r~~~~~~l~~~L~---~----------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++| -+..+++|.+.+. + .+.+-+.++|++|.|||-||++|+++. ...|+.||..-
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgse--- 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGSE--- 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechHH---
Confidence 565 4666666655442 1 256678899999999999999999875 13456777541
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEecccccc----------c------cccccccCCCC-C
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELV----------D------LDQVGLPIPSR-T 273 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~------~~~~~~~l~~~-~ 273 (873)
-+++-|-+. ....+.+.-.. ..-+.++..|.+++.. | .-++...+... .
T Consensus 217 lvqk~igeg-------------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 217 LVQKYIGEG-------------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHHhhhh-------------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 122222111 12222222222 3467788888876421 1 01111222111 0
Q ss_pred CCCcEEEEEccchhhhhc-----cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHH
Q 002863 274 SVSNKVVFTTREFEVCGQ-----MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETL 334 (873)
Q Consensus 274 ~~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i 334 (873)
.+.-+||..|..-++... -.-...++.++-+++.-.++++-+....+...--++..+|.++
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm 349 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKM 349 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhC
Confidence 345688887766555322 1234568888888888788887665444322233454444444
No 339
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.095 Score=55.55 Aligned_cols=96 Identities=21% Similarity=0.348 Sum_probs=58.1
Q ss_pred HHHHHHHHhcC--CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc--
Q 002863 153 FDRVWRCLMEE--HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW-- 228 (873)
Q Consensus 153 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-- 228 (873)
..++-..|..+ .-++|.|-|-+|+|||||.-+++.+. ..+. .+.+|+-.+. ..++ +--+++++...+..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~l-A~~~---~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l 151 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL-AKRG---KVLYVSGEES--LQQI-KLRADRLGLPTNNLYL 151 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHH-HhcC---cEEEEeCCcC--HHHH-HHHHHHhCCCccceEE
Confidence 34444445433 45699999999999999999999987 2222 5676655443 3332 33456676543221
Q ss_pred -cccCHHHHHHHHHHHhccCCeEEEEecccc
Q 002863 229 -KNKSMQEKAQQIFNILSKKKFVLLLDDMWE 258 (873)
Q Consensus 229 -~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 258 (873)
...+.++..+.+. +.++-++|+|-+..
T Consensus 152 ~aEt~~e~I~~~l~---~~~p~lvVIDSIQT 179 (456)
T COG1066 152 LAETNLEDIIAELE---QEKPDLVVIDSIQT 179 (456)
T ss_pred ehhcCHHHHHHHHH---hcCCCEEEEeccce
Confidence 2233444333333 36788999999853
No 340
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.44 E-value=0.099 Score=54.21 Aligned_cols=90 Identities=19% Similarity=0.216 Sum_probs=49.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccH--HHHHHHHHHHhCCCCcc-ccccCHHHH-HHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL--EKIQEIIAKKIGLFNES-WKNKSMQEK-AQQ 239 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 239 (873)
..++|.++|++|+||||++..++... . ... ..+.++++.. +.. .+-++..++..+.+.-. ....++... ...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~-~~g-~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K-KQG-KSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H-hcC-CEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 46799999999999999999988776 2 222 2455565442 322 23344455555543110 012233332 233
Q ss_pred HHHHhccCCeEEEEeccc
Q 002863 240 IFNILSKKKFVLLLDDMW 257 (873)
Q Consensus 240 l~~~l~~k~~LlVlDdv~ 257 (873)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 333333444578888764
No 341
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.44 E-value=0.066 Score=55.01 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=56.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHH---HHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQE---KAQQI 240 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~~~l 240 (873)
..+++=|+|+.|+||||+|.+++-.. +..-..++|++.-..+++..+..--...+..-. .....+.++ .+..+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~-v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLL-VSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhccee-EecCCCHHHHHHHHHHH
Confidence 45789999999999999998877765 334448899999998888776443322121100 002222222 23333
Q ss_pred HHHhccCCeEEEEeccc
Q 002863 241 FNILSKKKFVLLLDDMW 257 (873)
Q Consensus 241 ~~~l~~k~~LlVlDdv~ 257 (873)
......+--|+|+|.|-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 33333446799999883
No 342
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.43 E-value=0.022 Score=54.72 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44699999999999999999998764
No 343
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.43 E-value=0.029 Score=56.00 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=38.0
Q ss_pred HHHHHHHHHhc--CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHH
Q 002863 152 TFDRVWRCLME--EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKI 213 (873)
Q Consensus 152 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 213 (873)
...++++.+.. ++..+|+|.|+||+|||||+.++.... ..+.+--.++-|.-|.+++--.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCcc
Confidence 45566666654 467899999999999999999988887 33333335555666666654443
No 344
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.42 E-value=0.036 Score=51.47 Aligned_cols=104 Identities=20% Similarity=0.282 Sum_probs=56.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI 243 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (873)
.-.+++|+|..|.|||||++.+.... . .....+|+.-.. .++... +-..-+...-.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~~~~-------------~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL-E---PDEGIVTWGSTV-------------KIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC-C---CCceEEEECCeE-------------EEEEEc---cCCHHHHHHHHHHHH
Confidence 34689999999999999999998865 1 223333332100 000000 011122233334555
Q ss_pred hccCCeEEEEeccccccc---cccccccCCCCCCCCcEEEEEccchhhhh
Q 002863 244 LSKKKFVLLLDDMWELVD---LDQVGLPIPSRTSVSNKVVFTTREFEVCG 290 (873)
Q Consensus 244 l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 290 (873)
+-.++-++++|+.-..-| ...+...+... +..||++|.+.+.+.
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~ 131 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFLD 131 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHH
Confidence 666778999999754322 22332233221 236888887765443
No 345
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.42 E-value=0.01 Score=56.20 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.|.+.|.+|+||||+|+++....
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 457789999999999999998876
No 346
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.41 E-value=0.072 Score=50.40 Aligned_cols=117 Identities=18% Similarity=0.174 Sum_probs=61.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceE--EEEEeCCcccHHHHHHHHHHHhCCC--Cc--cccccCHH----
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFV--IWVVVSRDLQLEKIQEIIAKKIGLF--NE--SWKNKSMQ---- 234 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~--~wv~~s~~~~~~~~~~~i~~~l~~~--~~--~~~~~~~~---- 234 (873)
.+.|-|++..|.||||.|..++-+. ....+... =|+.-.........++.+ .+... .. .+...+.+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra--~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA--LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH--HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 4688899999999999998877765 12333321 233333223333444332 11100 00 11111111
Q ss_pred ---HHHHHHHHHhccCC-eEEEEeccccc-----cccccccccCCCCCCCCcEEEEEccch
Q 002863 235 ---EKAQQIFNILSKKK-FVLLLDDMWEL-----VDLDQVGLPIPSRTSVSNKVVFTTREF 286 (873)
Q Consensus 235 ---~~~~~l~~~l~~k~-~LlVlDdv~~~-----~~~~~~~~~l~~~~~~gs~iivTtR~~ 286 (873)
+.....++.+...+ =|||||.+-.. .+.+++...+... ..+.-||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r-p~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER-PGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC-CCCCEEEEECCCC
Confidence 12233344444444 49999998543 2333444444443 5667999999985
No 347
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.41 E-value=0.014 Score=58.30 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=24.2
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 348
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.39 E-value=0.013 Score=56.29 Aligned_cols=48 Identities=25% Similarity=0.368 Sum_probs=32.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHH
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIA 218 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 218 (873)
..+|+|-||-|+||||||+.+.++. . |. ...-.+.+++-+....+++-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l-~----~~-~~~E~vednp~L~~FY~d~~ 51 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL-G----FK-VFYELVEDNPFLDLFYEDPE 51 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh-C----Cc-eeeecccCChHHHHHHHhHH
Confidence 4689999999999999999999987 2 22 22223445544445555443
No 349
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.037 Score=53.35 Aligned_cols=120 Identities=20% Similarity=0.199 Sum_probs=60.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc---ccc---------c
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES---WKN---------K 231 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~---------~ 231 (873)
.-.+++|+|+.|+|||||++.++... . .....+++.-....... ..+...++..... ... .
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL-K---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-C---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 34589999999999999999998865 1 22333333211000000 1111111110000 000 1
Q ss_pred CHHHHHHHHHHHhccCCeEEEEecccccccc---ccccccCCCCCCCCcEEEEEccchhhhh
Q 002863 232 SMQEKAQQIFNILSKKKFVLLLDDMWELVDL---DQVGLPIPSRTSVSNKVVFTTREFEVCG 290 (873)
Q Consensus 232 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~~~~~l~~~~~~gs~iivTtR~~~v~~ 290 (873)
.-+...-.+...+..++=++++|+.-..-|. ..+...+......|..||++|.+.+...
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 1122233455667788899999998654332 2222222111023567888888876544
No 350
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.39 E-value=0.014 Score=58.18 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=24.0
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+...+|+|+|++|+||||||+.+....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999999876
No 351
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.38 E-value=0.031 Score=50.76 Aligned_cols=110 Identities=16% Similarity=0.296 Sum_probs=43.9
Q ss_pred ceEEEEeecccccccccc--CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC--CC-CccccCcccCCEEec
Q 002863 505 DVTRMSLMDNKIKRLTVS--PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS--DL-PCEISNLVSLQYLDL 579 (873)
Q Consensus 505 ~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n--~l-p~~i~~L~~L~~L~L 579 (873)
+++.+.+.. .+..+... ..+++|+.+.+..+ +..++ ...|.+++.|+.+.+.++ .+ ...+..+.+|+.+++
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~--~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIG--DNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE---TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccc--eeeeeccccccccccccccccccccccccccccccccc
Confidence 455555542 34444332 44556666666553 55555 555666666666666543 22 233445666666666
Q ss_pred CCCCCCccchh-hhcCCCCcEeeccccccccccChhhhCCCccc
Q 002863 580 SNSIPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKML 622 (873)
Q Consensus 580 ~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L 622 (873)
..+ +..++.. +.++ +|+.+.+.. .+..++...|.++++|
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 543 4444433 4444 666666554 3455555555555554
No 352
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.25 Score=57.24 Aligned_cols=174 Identities=17% Similarity=0.196 Sum_probs=100.0
Q ss_pred cccchhHHHHHH---HHHHhcC---------CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHH
Q 002863 145 TVVGLQLTFDRV---WRCLMEE---------HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEK 212 (873)
Q Consensus 145 ~~vgr~~~~~~l---~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 212 (873)
++.|-++.+++| +++|.++ -++=+.++|++|+|||-||++++... . +-|+.+|..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS----- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS----- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH-----
Confidence 467877655555 5556542 24567799999999999999999986 2 234555543
Q ss_pred HHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEeccccccc-----------------cccccccCCCCCC
Q 002863 213 IQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELVD-----------------LDQVGLPIPSRTS 274 (873)
Q Consensus 213 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-----------------~~~~~~~l~~~~~ 274 (873)
+..+.+... . ...+..+.... ...+.++.+|+++...- +.++..-+.....
T Consensus 379 ---EFvE~~~g~-------~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ---EFVEMFVGV-------G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ---HHHHHhccc-------c-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 111111110 0 22333333333 35688999998853211 2222222221111
Q ss_pred -CCcEEEEEccchhhhhc--c---ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHH
Q 002863 275 -VSNKVVFTTREFEVCGQ--M---EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLAL 345 (873)
Q Consensus 275 -~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 345 (873)
.+--++-+|+..++... + .-...+.++.-+.....++|.-++...... .+..++.+ |+...-|.+=|.
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 22233445665555321 1 235678888888899999999988765532 34456666 888888877543
No 353
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.37 E-value=0.015 Score=58.36 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEeCCCCcHHHHHHHHHhhh
Q 002863 168 VGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 168 i~I~G~gGiGKTtLa~~v~~~~ 189 (873)
|.|.|++|+||||+|+.+.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998876
No 354
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.35 E-value=0.028 Score=55.98 Aligned_cols=26 Identities=38% Similarity=0.386 Sum_probs=22.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|..|+|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998864
No 355
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.35 E-value=0.07 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 356
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.34 E-value=0.065 Score=58.05 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..++.++|++|+||||+|.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988654
No 357
>PTZ00035 Rad51 protein; Provisional
Probab=95.34 E-value=0.18 Score=54.00 Aligned_cols=92 Identities=20% Similarity=0.215 Sum_probs=54.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccC----CCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc-------ccccC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDT----PNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES-------WKNKS 232 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 232 (873)
...++.|+|.+|+|||||+..++-.. .. ...=..++|++....++..++ ..++++++..... ....+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 46799999999999999999887544 21 112235779988877777764 4456665543211 01123
Q ss_pred HHHHHHHH---HHHh-ccCCeEEEEeccc
Q 002863 233 MQEKAQQI---FNIL-SKKKFVLLLDDMW 257 (873)
Q Consensus 233 ~~~~~~~l---~~~l-~~k~~LlVlDdv~ 257 (873)
.++....+ ...+ .++--|||+|-+.
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 33333332 2223 2445588888873
No 358
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.34 E-value=0.0057 Score=35.90 Aligned_cols=18 Identities=39% Similarity=0.650 Sum_probs=8.5
Q ss_pred CCEEecCCCCCCccchhh
Q 002863 574 LQYLDLSNSIPDRLPLGL 591 (873)
Q Consensus 574 L~~L~L~~~~i~~lp~~i 591 (873)
|++|||++|.++.+|.+|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 359
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.32 E-value=0.042 Score=59.90 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=54.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-cHHHHHHHHHHHhCCCCcc----ccccCHHHH--
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQEIIAKKIGLFNES----WKNKSMQEK-- 236 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~-- 236 (873)
....++|+|..|+|||||++.+++.. ..+.++.+-+.+.. ...++.+.++..-++.... ..+......
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 45689999999999999999998754 22456666666543 3455666654443222110 011111111
Q ss_pred ----HHHHHHHh--ccCCeEEEEecccc
Q 002863 237 ----AQQIFNIL--SKKKFVLLLDDMWE 258 (873)
Q Consensus 237 ----~~~l~~~l--~~k~~LlVlDdv~~ 258 (873)
+-.+.+++ +|+.+|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 12233444 68999999999843
No 360
>PRK06762 hypothetical protein; Provisional
Probab=95.31 E-value=0.015 Score=55.66 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=22.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|.|.|++|+||||+|+.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998875
No 361
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.17 Score=54.00 Aligned_cols=90 Identities=19% Similarity=0.117 Sum_probs=54.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-cHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN 242 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (873)
..++++++|+.|+||||++..++... ..+ . ..+.+|++.... ...+-++..++.++.+.. ...+..+....+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~-g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ-N-RTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc-C-CeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 46799999999999999999988765 222 2 346666654322 234456666666665421 23455665544443
Q ss_pred Hhc-cCCeEEEEecccc
Q 002863 243 ILS-KKKFVLLLDDMWE 258 (873)
Q Consensus 243 ~l~-~k~~LlVlDdv~~ 258 (873)
.-. +..=+|++|-...
T Consensus 280 l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 280 MTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 321 3445777887743
No 362
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.30 E-value=0.036 Score=59.69 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=37.0
Q ss_pred CcccchhHHHHHHHHHHhcC--------------CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLMEE--------------HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..++|.++.++.+.-++... ..+-|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789988888887666531 23678899999999999999999876
No 363
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.28 E-value=0.064 Score=54.19 Aligned_cols=127 Identities=21% Similarity=0.252 Sum_probs=67.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCC--CC--------------ceEEEEE----------------eCCc----
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPN--HF--------------DFVIWVV----------------VSRD---- 207 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~f--------------~~~~wv~----------------~s~~---- 207 (873)
.-.+++|+|+.|+|||||.+.++.-.....+ .. ..+++|. .++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 4569999999999999999998874310000 00 0122221 1110
Q ss_pred -c---c--HHHHHHHHHHHhCCCCc---cccccCHHH-HHHHHHHHhccCCeEEEEeccccccccc------cccccCCC
Q 002863 208 -L---Q--LEKIQEIIAKKIGLFNE---SWKNKSMQE-KAQQIFNILSKKKFVLLLDDMWELVDLD------QVGLPIPS 271 (873)
Q Consensus 208 -~---~--~~~~~~~i~~~l~~~~~---~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~~~~~l~~ 271 (873)
+ . -.++....++.++...- .+..-+-.+ ...-+...|.++.=+++||+--+.-|.. ++...+..
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~ 186 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR 186 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH
Confidence 0 1 11234444555554321 112222233 3344556778888899999864432221 11122221
Q ss_pred CCCCCcEEEEEccchhhhhcc
Q 002863 272 RTSVSNKVVFTTREFEVCGQM 292 (873)
Q Consensus 272 ~~~~gs~iivTtR~~~v~~~~ 292 (873)
..|..||+++.+-+.|...
T Consensus 187 --~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 187 --EKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred --hcCCEEEEEecCHHHHHHh
Confidence 3467899999998776654
No 364
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.27 E-value=0.029 Score=56.79 Aligned_cols=61 Identities=23% Similarity=0.320 Sum_probs=44.7
Q ss_pred HHHHHHHHhc--CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHH
Q 002863 153 FDRVWRCLME--EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQ 214 (873)
Q Consensus 153 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 214 (873)
-.+++..+.. ++..+|+|.|.||+|||||..++.... ..+.+--.++=|.-|.+++--.++
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccc
Confidence 3455555543 577899999999999999999988887 445555566777777777654443
No 365
>PRK05439 pantothenate kinase; Provisional
Probab=95.26 E-value=0.13 Score=54.02 Aligned_cols=81 Identities=20% Similarity=0.139 Sum_probs=44.6
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHH--HHHHHhCCCCccccccCHHHHHHHH
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQE--IIAKKIGLFNESWKNKSMQEKAQQI 240 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~--~i~~~l~~~~~~~~~~~~~~~~~~l 240 (873)
...-+|+|.|.+|+||||+|+.+.... .....-..+.-++...-+...+.+. .+...-|. +..-+.+.+...+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l-~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~----Pes~D~~~l~~~L 158 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL-SRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGF----PESYDMRALLRFL 158 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-HhhCCCCceEEEeccccccCHHHHhhhhccccCCC----cccccHHHHHHHH
Confidence 356799999999999999999888755 1111112344444444333322222 11111111 2344566666666
Q ss_pred HHHhccCC
Q 002863 241 FNILSKKK 248 (873)
Q Consensus 241 ~~~l~~k~ 248 (873)
.....|+.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 66656665
No 366
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.25 E-value=0.015 Score=56.96 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.++|+|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 367
>PRK04328 hypothetical protein; Provisional
Probab=95.25 E-value=0.073 Score=54.62 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=35.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGL 223 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 223 (873)
.-+++.|.|.+|+|||+||.++.... ...-+..+|++.... +.++.+ .+++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~--~~~i~~-~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH--PVQVRR-NMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC--HHHHHH-HHHHcCC
Confidence 46799999999999999998866553 122345788877653 334333 3444443
No 368
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.22 E-value=0.046 Score=53.90 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
.+++|+|+.|.|||||++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999988754
No 369
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.21 E-value=0.036 Score=64.14 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=56.9
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGL 223 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 223 (873)
+.++|.++.++.+...+... +.+.++|++|+||||+|+.+.+.. -..+++..+|..-+.. +...+++.+..++|.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l--~~~~~~~~~~~~np~~-~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL--PKEELQDILVYPNPED-PNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc--ChHhHHHheEeeCCCc-chHHHHHHHHHhcCH
Confidence 45789998888888777654 368899999999999999998876 2345688888766443 667777777766653
No 370
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.20 E-value=0.044 Score=56.52 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=19.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.|.|.|.+|+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999887
No 371
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.031 Score=50.17 Aligned_cols=71 Identities=11% Similarity=0.128 Sum_probs=41.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL 244 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (873)
.+-|.|.|.+|+||||+|..++... . .-|+++|+-..-..+...--++.. ...-+.+.+.+.|...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y~-----c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEYK-----CHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhccccccc-----CccccHHHHHHHHHHHH
Confidence 3458899999999999999998654 2 346777754333333322211111 12335566666666665
Q ss_pred ccCC
Q 002863 245 SKKK 248 (873)
Q Consensus 245 ~~k~ 248 (873)
.+..
T Consensus 74 ~~Gg 77 (176)
T KOG3347|consen 74 IEGG 77 (176)
T ss_pred hcCC
Confidence 5433
No 372
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.20 E-value=0.16 Score=54.41 Aligned_cols=88 Identities=25% Similarity=0.255 Sum_probs=49.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc-ccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN 242 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (873)
+.++|+++|+.|+||||-..+++..+ ...+.-..+..|+...- ....+-++.-++-++++.. ...+..+....+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~ 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEA 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHH
Confidence 47899999999999996555555555 21233345666665432 1344556666666776542 23344444444333
Q ss_pred HhccCCeEEEEecc
Q 002863 243 ILSKKKFVLLLDDM 256 (873)
Q Consensus 243 ~l~~k~~LlVlDdv 256 (873)
+++.. +|.+|-+
T Consensus 279 -l~~~d-~ILVDTa 290 (407)
T COG1419 279 -LRDCD-VILVDTA 290 (407)
T ss_pred -hhcCC-EEEEeCC
Confidence 33333 3344554
No 373
>PRK03839 putative kinase; Provisional
Probab=95.19 E-value=0.016 Score=56.38 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 374
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.17 E-value=0.073 Score=56.55 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEeCCCCcHHHHHHHHHhhh
Q 002863 168 VGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 168 i~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+++.|++|+||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998776
No 375
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.16 E-value=0.041 Score=61.20 Aligned_cols=98 Identities=21% Similarity=0.232 Sum_probs=51.3
Q ss_pred HHHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEE-EEeCCcc-cHHHHHHHHHHHhCCCCccccccC
Q 002863 156 VWRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIW-VVVSRDL-QLEKIQEIIAKKIGLFNESWKNKS 232 (873)
Q Consensus 156 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w-v~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~ 232 (873)
+++.+.. +.-.-..|+|++|+|||||++.+.+... ..+-++.++ +-|.+.. .+.++.+.+-..+ +. ..++...
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeV-Va-sT~D~p~ 481 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEV-IA-STFDRPP 481 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceE-EE-ECCCCCH
Confidence 3444432 3445788999999999999999998652 223344433 3354433 2333332221000 10 0111111
Q ss_pred -----HHHHHHHHHHHh--ccCCeEEEEeccc
Q 002863 233 -----MQEKAQQIFNIL--SKKKFVLLLDDMW 257 (873)
Q Consensus 233 -----~~~~~~~l~~~l--~~k~~LlVlDdv~ 257 (873)
....+-.+-+++ .++.+||++|++-
T Consensus 482 ~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 482 SDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 111222233444 6899999999984
No 376
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.15 E-value=0.081 Score=53.19 Aligned_cols=122 Identities=20% Similarity=0.234 Sum_probs=67.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCC----------CCC---ceEEEEEeC----Ccc--cH--------------
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTP----------NHF---DFVIWVVVS----RDL--QL-------------- 210 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------~~f---~~~~wv~~s----~~~--~~-------------- 210 (873)
.-.+++|+|+.|.|||||.+.+..-....+ ..+ ..+.||.=. ..+ ++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 346999999999999999999988331100 001 245665411 111 11
Q ss_pred --------HHHHHHHHHHhCCCCc---cccccCH-HHHHHHHHHHhccCCeEEEEeccccccc------cccccccCCCC
Q 002863 211 --------EKIQEIIAKKIGLFNE---SWKNKSM-QEKAQQIFNILSKKKFVLLLDDMWELVD------LDQVGLPIPSR 272 (873)
Q Consensus 211 --------~~~~~~i~~~l~~~~~---~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~~~~~l~~~ 272 (873)
.+...+.+++.++..- ....-+- +...-.+.+.|.+++=|+|||.--..-| .-++...+.
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~-- 186 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR-- 186 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--
Confidence 1344455555554321 1112222 2333345577889999999998543222 222322332
Q ss_pred CCCCcEEEEEccchhh
Q 002863 273 TSVSNKVVFTTREFEV 288 (873)
Q Consensus 273 ~~~gs~iivTtR~~~v 288 (873)
..|..|+++|-+-+.
T Consensus 187 -~eg~tIl~vtHDL~~ 201 (254)
T COG1121 187 -QEGKTVLMVTHDLGL 201 (254)
T ss_pred -HCCCEEEEEeCCcHH
Confidence 237889999988544
No 377
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.14 E-value=0.081 Score=51.73 Aligned_cols=45 Identities=24% Similarity=0.166 Sum_probs=30.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHH
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEI 216 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 216 (873)
++.|.|++|+|||++|.++..... + .=..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~-~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--A-RGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--H-CCCcEEEEECCC--CHHHHHHH
Confidence 367899999999999998877651 1 223477777654 34444443
No 378
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.07 Score=51.97 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhccCCeEEEEecccccccccccc------ccCCCCCCCCcEEEEEccchhhhhcccccccee
Q 002863 234 QEKAQQIFNILSKKKFVLLLDDMWELVDLDQVG------LPIPSRTSVSNKVVFTTREFEVCGQMEAHRSFK 299 (873)
Q Consensus 234 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~------~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~ 299 (873)
+.....+.+.+--++-+.|||..++--|.+.+. ..+. ..|+-+++.|..+.++....+..++-
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr---~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR---EEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh---cCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 334455666667788999999998766655432 2222 34667888888888888776555443
No 379
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.12 E-value=0.036 Score=50.03 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=28.4
Q ss_pred HHHHHHHHHhc--CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 152 TFDRVWRCLME--EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 152 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.+++-+.|.. ....+|.+.|.-|+||||+++.+++..
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34444444433 244589999999999999999999876
No 380
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.19 Score=57.25 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=59.3
Q ss_pred CcccchhHHHHHHHHHHhc------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCLME------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
+++=|.++.+.+|.+-+.- .+.+=|.+||++|.|||-+|++|+-... ..|++|-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------eeEEeecCH----
Confidence 4566788888888876642 1345688999999999999999998871 345555543
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccc
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWE 258 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 258 (873)
+++..- ...+++...+...+.-..++++|.+|.++.
T Consensus 740 ELLNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHH-----------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 222111 122233333333333356899999999975
No 381
>PRK06217 hypothetical protein; Validated
Probab=95.09 E-value=0.033 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999876
No 382
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.04 E-value=0.036 Score=53.73 Aligned_cols=26 Identities=42% Similarity=0.442 Sum_probs=22.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44699999999999999999998764
No 383
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.03 E-value=0.053 Score=50.08 Aligned_cols=42 Identities=33% Similarity=0.324 Sum_probs=31.0
Q ss_pred EEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHH
Q 002863 168 VGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQE 215 (873)
Q Consensus 168 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 215 (873)
|.++|++|+|||+||+.+++.. .. ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEecccccccccee
Confidence 5689999999999999999876 11 234467777777776653
No 384
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.01 E-value=0.066 Score=58.73 Aligned_cols=88 Identities=20% Similarity=0.241 Sum_probs=49.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHh-----CCCCccccccCHHH---
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKI-----GLFNESWKNKSMQE--- 235 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~~--- 235 (873)
.-..++|+|..|+|||||++.+.... .....+++..-.+..++.++....+... +.... .+.....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~q--sd~~~~~r~~ 237 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVAT--SDESPMMRRL 237 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEc--CCCCHHHHHH
Confidence 44589999999999999999887654 1223444443323344554444333322 11111 1111111
Q ss_pred ---HHHHHHHHh--ccCCeEEEEeccc
Q 002863 236 ---KAQQIFNIL--SKKKFVLLLDDMW 257 (873)
Q Consensus 236 ---~~~~l~~~l--~~k~~LlVlDdv~ 257 (873)
.+-.+-+++ +++.+|+++||+-
T Consensus 238 ~~~~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 238 APLTATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchH
Confidence 122233444 5899999999984
No 385
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.99 E-value=0.07 Score=51.70 Aligned_cols=124 Identities=18% Similarity=0.108 Sum_probs=67.7
Q ss_pred HHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceE--EEEEeCCccc---HHHHHHHHHHHhCCCCccccc
Q 002863 156 VWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFV--IWVVVSRDLQ---LEKIQEIIAKKIGLFNESWKN 230 (873)
Q Consensus 156 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~--~wv~~s~~~~---~~~~~~~i~~~l~~~~~~~~~ 230 (873)
++..|.+....-..|.|++|+|||||.+.++...+.....|-.. .-|.-+.... ..-=+..+.....+-
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVl------ 201 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVL------ 201 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhc------
Confidence 66666666666678999999999999999988764444455422 2222111100 000011111111111
Q ss_pred cCHHHHHHHHHHHh-ccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhhh
Q 002863 231 KSMQEKAQQIFNIL-SKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVCG 290 (873)
Q Consensus 231 ~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 290 (873)
+..-...-+.... ..-+=++|.|.+....+-..+..++ ..|.++|.|..-..+..
T Consensus 202 -d~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~----~~GVkli~TaHG~~ied 257 (308)
T COG3854 202 -DPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL----HAGVKLITTAHGNGIED 257 (308)
T ss_pred -ccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH----hcCcEEEEeeccccHHH
Confidence 1111122222223 2467799999998877766555554 56788888876544433
No 386
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.14 Score=51.59 Aligned_cols=91 Identities=19% Similarity=0.323 Sum_probs=60.3
Q ss_pred CcccchhHHHHHHHHHHh---------cC---CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCLM---------EE---HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~---------~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
+++.|.+..++.|.+... .+ ..+-|.++|++|.|||.||++|+-.. .. -|.+||..-
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nS-----TFFSvSSSD--- 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NS-----TFFSVSSSD--- 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CC-----ceEEeehHH---
Confidence 457888888888877642 11 35788999999999999999999876 12 233444331
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEecccc
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWE 258 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 258 (873)
+ +-+.+| ..+.++..|.+.. ++|+.+|.+|.|+.
T Consensus 202 -L---vSKWmG---------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 202 -L---VSKWMG---------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred -H---HHHHhc---------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 1 112222 1245566666655 46899999999964
No 387
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.95 E-value=0.042 Score=56.98 Aligned_cols=90 Identities=26% Similarity=0.399 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccC
Q 002863 153 FDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKS 232 (873)
Q Consensus 153 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 232 (873)
...+++.+...+. -+.++|+.|+|||++++...... . ...| ...-++.+...+...+++.+-..+.....
T Consensus 22 ~~~ll~~l~~~~~-pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~------ 91 (272)
T PF12775_consen 22 YSYLLDLLLSNGR-PVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRG------ 91 (272)
T ss_dssp HHHHHHHHHHCTE-EEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTT------
T ss_pred HHHHHHHHHHcCC-cEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC------
Confidence 3455666665554 45799999999999999887765 2 2222 24445666655555544332221111000
Q ss_pred HHHHHHHHHHHhccCCeEEEEecccc
Q 002863 233 MQEKAQQIFNILSKKKFVLLLDDMWE 258 (873)
Q Consensus 233 ~~~~~~~l~~~l~~k~~LlVlDdv~~ 258 (873)
....--.+|+.++++||+.-
T Consensus 92 ------~~~gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 92 ------RVYGPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp ------EEEEEESSSEEEEEEETTT-
T ss_pred ------CCCCCCCCcEEEEEecccCC
Confidence 00000136889999999863
No 388
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.95 E-value=0.1 Score=53.25 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=58.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhcc--CCCCCceEEEEEeCCcc-cHHHHHHHHHHHhCCCCccc----cccCHHH-
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFD--TPNHFDFVIWVVVSRDL-QLEKIQEIIAKKIGLFNESW----KNKSMQE- 235 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~~~- 235 (873)
.-.-++|.|..|+|||||+.++.++. . .+.+-+.++++-+.+.. ...++.+++.+.-.+..... .+.....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~-~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQA-GVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhh-hccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 44578999999999999999988775 2 12335678888887654 56667776665432221100 1111111
Q ss_pred -----HHHHHHHHh---ccCCeEEEEecccc
Q 002863 236 -----KAQQIFNIL---SKKKFVLLLDDMWE 258 (873)
Q Consensus 236 -----~~~~l~~~l---~~k~~LlVlDdv~~ 258 (873)
.+-.+.+++ +++++|+++||+-.
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 122333444 37899999999843
No 389
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.91 E-value=0.095 Score=53.43 Aligned_cols=60 Identities=30% Similarity=0.359 Sum_probs=38.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhhccCCCCCc-------eEEEEEeCCc-ccHHHHHHHHHHHhCCCCc
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFD-------FVIWVVVSRD-LQLEKIQEIIAKKIGLFNE 226 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-------~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~ 226 (873)
++.|+|.||+|||||+-..+=.....++-|. .+++|++... .++-+-++.+..++++++.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPa 158 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPA 158 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChH
Confidence 4456799999999999765543322233333 5666665543 2455567778888887654
No 390
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.90 E-value=0.039 Score=50.72 Aligned_cols=23 Identities=43% Similarity=0.736 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998875
No 391
>PRK04040 adenylate kinase; Provisional
Probab=94.89 E-value=0.024 Score=55.22 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=22.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 392
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.88 E-value=0.13 Score=53.04 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=29.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 206 (873)
..+++.|.|.+|+||||+|.++..... ..=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 457999999999999999998766541 1234677787764
No 393
>PRK05973 replicative DNA helicase; Provisional
Probab=94.87 E-value=0.17 Score=50.94 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=33.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEII 217 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 217 (873)
...++.|.|.+|+|||++|.++..... +. =..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hc-CCeEEEEEEeCC--HHHHHHHH
Confidence 446889999999999999998876551 22 234666665543 45555554
No 394
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.85 E-value=0.041 Score=59.42 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=61.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH-HHHHHHHHHhCCCCccccccCHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE-KIQEIIAKKIGLFNESWKNKSMQEKAQQIFN 242 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (873)
..+.|.|.|+.|+||||+++.+.+.. .......++. +.++.... .-...+..+-. ...+.......++.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~~~~~~~~~i~q~e------vg~~~~~~~~~l~~ 190 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEYVHRNKRSLINQRE------VGLDTLSFANALRA 190 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhhhccCccceEEccc------cCCCCcCHHHHHHH
Confidence 45789999999999999999988765 2233334443 22221110 00000000000 11122335566777
Q ss_pred HhccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchh
Q 002863 243 ILSKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFE 287 (873)
Q Consensus 243 ~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~ 287 (873)
.++..+=.|++|.+.+...+....... ..|-.|+.|.-..+
T Consensus 191 ~lr~~pd~i~vgEird~~~~~~~l~aa----~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 191 ALREDPDVILIGEMRDLETVELALTAA----ETGHLVFGTLHTNS 231 (343)
T ss_pred hhccCCCEEEEeCCCCHHHHHHHHHHH----HcCCcEEEEEcCCC
Confidence 888899999999998766654422221 33445666655443
No 395
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.83 E-value=0.079 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.638 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 396
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.83 E-value=0.1 Score=58.36 Aligned_cols=85 Identities=22% Similarity=0.298 Sum_probs=49.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc---cccCHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW---KNKSMQEKAQQI 240 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (873)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ..++... ++.++...+.. ...+.+.....+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 456999999999999999999988762 12235777776543 3333322 45555422111 122333333322
Q ss_pred HHHhccCCeEEEEeccc
Q 002863 241 FNILSKKKFVLLLDDMW 257 (873)
Q Consensus 241 ~~~l~~k~~LlVlDdv~ 257 (873)
. +.+.-++|+|.+.
T Consensus 153 ~---~~~~~lVVIDSIq 166 (446)
T PRK11823 153 E---EEKPDLVVIDSIQ 166 (446)
T ss_pred H---hhCCCEEEEechh
Confidence 2 2355678888873
No 397
>PRK00625 shikimate kinase; Provisional
Probab=94.83 E-value=0.022 Score=54.55 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 398
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.82 E-value=0.066 Score=57.83 Aligned_cols=78 Identities=17% Similarity=0.100 Sum_probs=49.1
Q ss_pred CcccchhHHHHHHHHHHhc---------C-----CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEe-CCcc
Q 002863 144 PTVVGLQLTFDRVWRCLME---------E-----HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV-SRDL 208 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~---------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~-s~~~ 208 (873)
..++|.++.++.+..++.. + ..+-|.++|++|+||||+|+.+......---.++...|... -...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 4589999999988877743 0 13678999999999999999998876111112222222221 1122
Q ss_pred cHHHHHHHHHHHh
Q 002863 209 QLEKIQEIIAKKI 221 (873)
Q Consensus 209 ~~~~~~~~i~~~l 221 (873)
+...+.+.+.+..
T Consensus 95 d~e~~ir~L~~~A 107 (443)
T PRK05201 95 DVESIIRDLVEIA 107 (443)
T ss_pred CHHHHHHHHHHHH
Confidence 5556666665544
No 399
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.81 E-value=0.02 Score=50.06 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=19.7
Q ss_pred EEEEeCCCCcHHHHHHHHHhhh
Q 002863 168 VGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 168 i~I~G~gGiGKTtLa~~v~~~~ 189 (873)
|-|+|++|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988776
No 400
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.81 E-value=0.088 Score=61.81 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=57.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc---cccCHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW---KNKSMQEKAQQI 240 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (873)
..+++-|+|.+|+||||||.+++.... ..=..++|+.....++. ..++++|+..+.. ...+.+.....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 467899999999999999987665541 22245789988777764 3677777643211 233445555555
Q ss_pred HHHhc-cCCeEEEEeccc
Q 002863 241 FNILS-KKKFVLLLDDMW 257 (873)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~ 257 (873)
...++ ++.-|||+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 466799999985
No 401
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.81 E-value=0.019 Score=55.94 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998876
No 402
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.80 E-value=0.98 Score=47.89 Aligned_cols=48 Identities=25% Similarity=0.238 Sum_probs=34.0
Q ss_pred ceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhH
Q 002863 297 SFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLA 344 (873)
Q Consensus 297 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 344 (873)
++++++++.+|+..++.-.....-.......+...+++.--.+|+|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 789999999999999987765544222233345566666667888854
No 403
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.80 E-value=0.027 Score=56.16 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINN 187 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~ 187 (873)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 404
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.79 E-value=0.093 Score=57.67 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=35.5
Q ss_pred CcccchhHHHHHHHHHHhc-------C---------CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLME-------E---------HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..++|.+..++.+...+.. . ..+.|.++|++|+|||++|+.++...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999988887655521 0 12568899999999999999998765
No 405
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.78 E-value=0.073 Score=58.84 Aligned_cols=92 Identities=21% Similarity=0.288 Sum_probs=58.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-cHHHHHHHHHHHhCCCCcc----ccccCHHH---
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQEIIAKKIGLFNES----WKNKSMQE--- 235 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~--- 235 (873)
.-.-++|.|.+|+|||||+.++.+.. . +.+-+.++++-+.+.. ...++.+.+...-.+.... ..+.....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~-~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNI-S-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 45689999999999999999988876 2 2356778887776543 4556666665443221110 01111211
Q ss_pred ---HHHHHHHHh---ccCCeEEEEeccc
Q 002863 236 ---KAQQIFNIL---SKKKFVLLLDDMW 257 (873)
Q Consensus 236 ---~~~~l~~~l---~~k~~LlVlDdv~ 257 (873)
.+-.+.+++ +|+.+|+++||+-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 122334555 3899999999983
No 406
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.76 E-value=0.13 Score=51.43 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=22.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+++|+|..|+|||||++.+....
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998764
No 407
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.76 E-value=0.031 Score=51.97 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..||-|.|.+|+||||||+++.+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999987
No 408
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.75 E-value=0.02 Score=56.62 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+|+|.|++|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997764
No 409
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.75 E-value=0.055 Score=52.36 Aligned_cols=23 Identities=39% Similarity=0.755 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 410
>PRK15453 phosphoribulokinase; Provisional
Probab=94.74 E-value=0.19 Score=51.39 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=44.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC--cccHHHHHHHHH--HHhCCCCcc--ccccCHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR--DLQLEKIQEIIA--KKIGLFNES--WKNKSMQEKA 237 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~--~~l~~~~~~--~~~~~~~~~~ 237 (873)
...+|+|.|.+|+||||+|+.+.+.. .... ...+.++... .++..+.-..+. +.-+..-+. .+..+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if-~~~~--~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF-RREN--INAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-hhcC--CCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45799999999999999999998765 2111 1233333322 223333322222 222222122 3556677777
Q ss_pred HHHHHHhcc
Q 002863 238 QQIFNILSK 246 (873)
Q Consensus 238 ~~l~~~l~~ 246 (873)
+.++.+.++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 777766553
No 411
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.74 E-value=0.12 Score=56.15 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=21.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+||||||+.+..-.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccc
Confidence 34589999999999999999976543
No 412
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.73 E-value=0.073 Score=58.29 Aligned_cols=91 Identities=25% Similarity=0.265 Sum_probs=50.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc----cccCHHH----
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW----KNKSMQE---- 235 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~---- 235 (873)
.-..++|.|..|+|||||++.+.... + ....++...-.+.....++.+..+..-++..... .+.....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~-~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT-D---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 44689999999999999999888765 1 1222322222223345555555544433221100 1111111
Q ss_pred --HHHHHHHHh--ccCCeEEEEecccc
Q 002863 236 --KAQQIFNIL--SKKKFVLLLDDMWE 258 (873)
Q Consensus 236 --~~~~l~~~l--~~k~~LlVlDdv~~ 258 (873)
.+-.+.+++ +++.+|+++||+-.
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122233444 58999999999843
No 413
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.73 E-value=0.061 Score=53.27 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
...+++|+|..|+|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4469999999999999999999876
No 414
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.73 E-value=0.049 Score=53.13 Aligned_cols=42 Identities=31% Similarity=0.487 Sum_probs=29.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccH
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 210 (873)
.|+|.|-||+||||+|..+.... -.++.|+ +.-|....++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l-~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL-LSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH-HhcCCce-EEEEeCCCCCCh
Confidence 68999999999999999866665 2233344 444666666554
No 415
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.72 E-value=0.09 Score=50.53 Aligned_cols=118 Identities=18% Similarity=0.153 Sum_probs=61.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEE---eCCcccHHHHHHHHH--HH--hCCCCccccccCHHH-
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV---VSRDLQLEKIQEIIA--KK--IGLFNESWKNKSMQE- 235 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~~i~--~~--l~~~~~~~~~~~~~~- 235 (873)
....|-|+|..|-||||.|..+.-+. ....+. +..+. -.........++.+- .. .+.. -.+...+.++
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra--~g~G~~-V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~-~~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA--VGHGKK-VGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTG-FTWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH--HHCCCe-EEEEEEecCCCccCHHHHHhcCCCcEEEECCCC-CcccCCCcHHH
Confidence 34689999999999999998877765 122332 22232 221233334443321 00 0110 0111111111
Q ss_pred ------HHHHHHHHhcc-CCeEEEEeccccc-----cccccccccCCCCCCCCcEEEEEccch
Q 002863 236 ------KAQQIFNILSK-KKFVLLLDDMWEL-----VDLDQVGLPIPSRTSVSNKVVFTTREF 286 (873)
Q Consensus 236 ------~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~~~~~l~~~~~~gs~iivTtR~~ 286 (873)
.....++.+.. +-=|||||.+-.. .+.+++...+... ..+.-||+|-|+.
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r-p~~~evVlTGR~~ 158 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR-PGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC-CCCCEEEEECCCC
Confidence 22333444444 4459999998543 2334444444443 5667999999975
No 416
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.72 E-value=0.054 Score=54.86 Aligned_cols=89 Identities=22% Similarity=0.207 Sum_probs=53.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCc-------------ccc-
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNE-------------SWK- 229 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------------~~~- 229 (873)
..+++.|.|.+|+|||++|.++.....+ ..=+.++||+...+. .++.+.+. .++.... ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~--~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLK--NFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--HHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhh--hcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 4579999999999999999876543311 102357788776543 44444433 4432110 001
Q ss_pred ----ccCHHHHHHHHHHHhcc-CCeEEEEeccc
Q 002863 230 ----NKSMQEKAQQIFNILSK-KKFVLLLDDMW 257 (873)
Q Consensus 230 ----~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 257 (873)
..+.+.....+.+.++. +...+|+|.+.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 34667777777777654 55788889874
No 417
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.72 E-value=0.18 Score=55.30 Aligned_cols=60 Identities=25% Similarity=0.264 Sum_probs=36.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc-ccHHHHHHHHHHHhCCC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQEIIAKKIGLF 224 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~ 224 (873)
...+|+++|+.|+||||++..+.... ......+.+..++.... ....+-+....+.++++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp 250 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVS 250 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCc
Confidence 34699999999999999999887754 11222233444443321 12333355555666654
No 418
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.71 E-value=0.2 Score=50.66 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=33.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGL 223 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 223 (873)
...++.|.|.+|+||||+|.++.... . +.. ..+++++... +..++.+.+ .+++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~-~~g-~~~~yi~~e~--~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-L-QNG-YSVSYVSTQL--TTTEFIKQM-MSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-H-hCC-CcEEEEeCCC--CHHHHHHHH-HHhCC
Confidence 34599999999999999986655443 1 122 3456666333 445666655 34443
No 419
>PF13245 AAA_19: Part of AAA domain
Probab=94.67 E-value=0.098 Score=42.21 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=18.1
Q ss_pred CcEEEEEEeCCCCcHHHHH-HHHHhh
Q 002863 164 HVGIVGLYGMGGVGKTTLL-TQINNR 188 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa-~~v~~~ 188 (873)
+.+++.|.|++|.|||+++ ..+..-
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4567888999999999555 444443
No 420
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.63 E-value=0.023 Score=54.90 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 421
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.61 E-value=0.092 Score=61.03 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=50.5
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGL 223 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 223 (873)
+.++|.++.++.+...+.... -+.++|++|+||||+|+.+.+.. . ...|...+++.-+.. +...+++.+..+++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~n~~~-~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYPNPED-PNMPRIVEVPAGEGR 92 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEeCCCC-CchHHHHHHHHhhch
Confidence 457899988887777776543 55599999999999999999876 2 233443444433322 445556777666653
No 422
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.61 E-value=0.054 Score=54.73 Aligned_cols=96 Identities=14% Similarity=0.229 Sum_probs=57.4
Q ss_pred cccchhHHHHHHHHHHhc-------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHH
Q 002863 145 TVVGLQLTFDRVWRCLME-------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEII 217 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 217 (873)
.++|-.-.++.++..+.+ .+.-|++.+|.+|+||.-.++.++++..+....-+. ....
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~---------------V~~f 147 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPF---------------VHHF 147 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchh---------------HHHh
Confidence 456766666666666653 356799999999999999999999886332211111 1112
Q ss_pred HHHhCCCCccccccCHHHHHHHHHHHhc-----cCCeEEEEeccccc
Q 002863 218 AKKIGLFNESWKNKSMQEKAQQIFNILS-----KKKFVLLLDDMWEL 259 (873)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~ 259 (873)
......+ .....+....+|++++. -+|-|+|+|+++..
T Consensus 148 vat~hFP----~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 148 VATLHFP----HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhhccCC----ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 2222221 22233334444444432 47999999999754
No 423
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.57 E-value=0.21 Score=49.76 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|.|..|+|||||++.+..-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44689999999999999999998654
No 424
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.53 Score=53.45 Aligned_cols=172 Identities=15% Similarity=0.169 Sum_probs=90.0
Q ss_pred CcccchhHHHHH---HHHHHhcC---------CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDR---VWRCLMEE---------HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~---l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
.++.|.++.+++ +++.|.+. -++=|.++|++|.|||.||++++... .+ .| .+.|.. +..
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V--PF-----f~iSGS-~FV 220 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV--PF-----FSISGS-DFV 220 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC--Cc-----eeccch-hhh
Confidence 457898766555 45566642 24567899999999999999999986 32 22 122221 100
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccc------------cccc----cccccCCCCCC-
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL------------VDLD----QVGLPIPSRTS- 274 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~~~~----~~~~~l~~~~~- 274 (873)
+ |. .|+ ......+...+..+.-++++++|.++.. +.++ ++..- .+++.
T Consensus 221 e----mf--VGv--------GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvE-mDGF~~ 285 (596)
T COG0465 221 E----MF--VGV--------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVE-MDGFGG 285 (596)
T ss_pred h----hh--cCC--------CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhh-hccCCC
Confidence 0 00 111 1111112222334556899999988632 1122 22111 12212
Q ss_pred -CCcEEEEEccchhhhhc-----cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh
Q 002863 275 -VSNKVVFTTREFEVCGQ-----MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPL 343 (873)
Q Consensus 275 -~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 343 (873)
.|-.|+-.|-.++|... -.-...+.++.-+-..-.+.++-++.........++. .|++.+-|.-.
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfsG 356 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFSG 356 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCccc
Confidence 34344445555555321 1234456666666567777777666554433333442 27777776543
No 425
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.55 E-value=0.022 Score=50.43 Aligned_cols=27 Identities=41% Similarity=0.516 Sum_probs=18.9
Q ss_pred EEEEeCCCCcHHHHHHHHHhhhccCCCCCc
Q 002863 168 VGLYGMGGVGKTTLLTQINNRFFDTPNHFD 197 (873)
Q Consensus 168 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~ 197 (873)
|.|+|.+|+||||+|+.++... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 5789999999999999999876 45664
No 426
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.54 E-value=0.048 Score=51.62 Aligned_cols=117 Identities=22% Similarity=0.204 Sum_probs=61.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc--cHHHHHHHHHHHhCCCCccccccCHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL--QLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIF 241 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 241 (873)
.-.+++|+|..|.|||||++.+.... ......+++...... ...+ ....++... +-..-+...-.+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~---qlS~G~~~r~~l~ 92 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEE----LRRRIGYVP---QLSGGQRQRVALA 92 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHH----HHhceEEEe---eCCHHHHHHHHHH
Confidence 34699999999999999999998865 123344444321110 1111 111222110 1112233333355
Q ss_pred HHhccCCeEEEEeccccccc---cccccccCCCCCCCCcEEEEEccchhhhhc
Q 002863 242 NILSKKKFVLLLDDMWELVD---LDQVGLPIPSRTSVSNKVVFTTREFEVCGQ 291 (873)
Q Consensus 242 ~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~iivTtR~~~v~~~ 291 (873)
..+...+-++++|+.-..-| ...+...+......+..++++|.+.+....
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 56666788999999865433 222222221110224578888887665443
No 427
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.54 E-value=0.029 Score=54.43 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+++|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 428
>PRK08149 ATP synthase SpaL; Validated
Probab=94.53 E-value=0.11 Score=56.99 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=51.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC-cccHHHHHHHHHHHhCCCC-----ccccccCHH---
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-DLQLEKIQEIIAKKIGLFN-----ESWKNKSMQ--- 234 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~--- 234 (873)
....++|+|..|+|||||++.+++.. .-+.++...+.. ..+..++..+......... .. .+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~-sd~p~~~r~ 223 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT-SDFSSVDRC 223 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC-CCCCHHHHH
Confidence 45689999999999999999998764 123333344433 2355566666655432211 01 111111
Q ss_pred ---HHHHHHHHHh--ccCCeEEEEecccc
Q 002863 235 ---EKAQQIFNIL--SKKKFVLLLDDMWE 258 (873)
Q Consensus 235 ---~~~~~l~~~l--~~k~~LlVlDdv~~ 258 (873)
..+-.+.+++ +||.+||++||+-.
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1222333444 58999999999843
No 429
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.50 E-value=0.22 Score=56.65 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=56.5
Q ss_pred HHHHHHHhcC--CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc----
Q 002863 154 DRVWRCLMEE--HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES---- 227 (873)
Q Consensus 154 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---- 227 (873)
.++-+.|..+ .-+++.|.|++|+|||||+.++..... ..-+.++++...+ +..++.+.+ +.+|.....
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhC
Confidence 3444444432 567999999999999999998877651 2224566665544 445555553 555543211
Q ss_pred ---------ccccCHHHHHHHHHHHhcc-CCeEEEEecc
Q 002863 228 ---------WKNKSMQEKAQQIFNILSK-KKFVLLLDDM 256 (873)
Q Consensus 228 ---------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 256 (873)
......++.+..+.+.++. +.-.+|+|.+
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 0112335555666665543 4456777776
No 430
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.48 E-value=0.15 Score=51.61 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=44.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc--ccHHHHHHHHHHH--hCCCCcc--ccccCHHHHHHHH
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD--LQLEKIQEIIAKK--IGLFNES--WKNKSMQEKAQQI 240 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~--l~~~~~~--~~~~~~~~~~~~l 240 (873)
+|+|.|..|+||||+|+.+.+.. .... ..++.++...- ++....-+.+.++ .+..-+. .+..+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-AREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999988876 2111 12334433221 2222222222222 2222122 3456677777777
Q ss_pred HHHhccCC
Q 002863 241 FNILSKKK 248 (873)
Q Consensus 241 ~~~l~~k~ 248 (873)
+.+.+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 77766654
No 431
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.46 E-value=0.033 Score=53.76 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 432
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.46 E-value=0.15 Score=56.79 Aligned_cols=59 Identities=24% Similarity=0.250 Sum_probs=36.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc-ccHHHHHHHHHHHhCCC
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQEIIAKKIGLF 224 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~ 224 (873)
..|++++|+.|+||||++.+++... ..+..-..+..+..... ....+-++...+.+++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 4699999999999999999998766 22222223455554321 12334455556666653
No 433
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.45 E-value=0.054 Score=51.60 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=32.3
Q ss_pred ccchhHHHHHHHHHHhc--CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 146 VVGLQLTFDRVWRCLME--EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 146 ~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
++|....+.++++.+.. ....-|.|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 47888888888877653 223455699999999999999998865
No 434
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.43 E-value=0.15 Score=56.24 Aligned_cols=94 Identities=13% Similarity=0.124 Sum_probs=53.1
Q ss_pred CcEEEEEEeCCCCcHHHHH-HHHHhhhccC-----CCCCceEEEEEeCCcccHHHHHHHHHHHhC-CCCccc----cccC
Q 002863 164 HVGIVGLYGMGGVGKTTLL-TQINNRFFDT-----PNHFDFVIWVVVSRDLQLEKIQEIIAKKIG-LFNESW----KNKS 232 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~----~~~~ 232 (873)
.-.-++|.|..|+|||||| ..+.+.. .+ .+.-+..+++.+++......-+.+.+++-+ +..... .+..
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 4457899999999999997 5666653 11 134456788888876543222344444433 211100 1111
Q ss_pred HH-H-----HHHHHHHHh--ccCCeEEEEecccc
Q 002863 233 MQ-E-----KAQQIFNIL--SKKKFVLLLDDMWE 258 (873)
Q Consensus 233 ~~-~-----~~~~l~~~l--~~k~~LlVlDdv~~ 258 (873)
.. + ..-.+-+++ +++.+|+|+||+-.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11 1 112233344 58999999999853
No 435
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.42 E-value=0.051 Score=52.94 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=29.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEE
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV 203 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 203 (873)
.++|.|+|+.|+|||||++.+.... ...|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4689999999999999999999987 56776555544
No 436
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.40 E-value=0.25 Score=54.25 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=52.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-cHHHHHHHHHHHhCCCCcc----ccccCHHHH--
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQEIIAKKIGLFNES----WKNKSMQEK-- 236 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~-- 236 (873)
....++|+|..|+|||||++.+++.. . .+.++++-+.+.. ...++.+..+..-++.... ..+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-D----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-C----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 45689999999999999999998765 1 2445556565543 3445555454433322110 011111111
Q ss_pred ----HHHHHHHh--ccCCeEEEEeccc
Q 002863 237 ----AQQIFNIL--SKKKFVLLLDDMW 257 (873)
Q Consensus 237 ----~~~l~~~l--~~k~~LlVlDdv~ 257 (873)
+-.+.+++ +|+.+|+++||+-
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 22233444 5899999999984
No 437
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.40 E-value=0.036 Score=54.13 Aligned_cols=104 Identities=15% Similarity=0.061 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCC--CCccccc
Q 002863 153 FDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGL--FNESWKN 230 (873)
Q Consensus 153 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~~~~~~ 230 (873)
..+++..... ....+.|+|+.|+||||+++.+.... . ..- .++-+ ... .++...-....+. .......
T Consensus 14 ~~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~i-~--~~~-~~i~i--ed~---~E~~~~~~~~~~~~~~~~~~~~ 83 (186)
T cd01130 14 QAAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAFI-P--PDE-RIITI--EDT---AELQLPHPNWVRLVTRPGNVEG 83 (186)
T ss_pred HHHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhhc-C--CCC-CEEEE--CCc---cccCCCCCCEEEEEEecCCCCC
Confidence 3344444333 34689999999999999999988765 2 111 12222 111 0100000000000 0000001
Q ss_pred cCHHHHHHHHHHHhccCCeEEEEecccccccccccc
Q 002863 231 KSMQEKAQQIFNILSKKKFVLLLDDMWELVDLDQVG 266 (873)
Q Consensus 231 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~ 266 (873)
.......+.++..++..+=.++++.+.+.+.++.+.
T Consensus 84 ~~~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 84 SGEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred CCccCHHHHHHHHhccCCCEEEEEccCcHHHHHHHH
Confidence 112234455566677778888999998876665443
No 438
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.37 E-value=0.33 Score=55.06 Aligned_cols=269 Identities=17% Similarity=0.125 Sum_probs=0.0
Q ss_pred hhHHHHhHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHh
Q 002863 11 CDDTISRCLHCTVRKARYVCNLQDNIHSLQEELRRLTEVRNDVKIRIIVAEQQQMKPLEQVHGWLSRVQEVETKVEKLKE 90 (873)
Q Consensus 11 ~~~~~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~v~~Wl~~~~~~~~d~ed~~d 90 (873)
++.+..+++..=..++..-.+-.+....-+.+....+.. +..++.+.-+..+.|+++-...+-.+...
T Consensus 213 Ld~V~t~I~~ld~g~l~~y~Gny~~~~~~r~~~~~~~~~----------~~~~~~~~~~~~~~~i~r~~~~~~~~k~a-- 280 (530)
T COG0488 213 LDNVATHILELDRGKLTPYKGNYSSYLEQKAERLRQEAA----------AYEKQQKELAKEQEWIRRGKAAASKAKKA-- 280 (530)
T ss_pred HHHHhhheEEecCCceeEecCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhccchHHHH--
Q ss_pred hcCCCCCCCcccchhHHHHHHHHHHHHHHhhcCCcccccccCCC-CCCCCCCCCCcccchhHHHHHHHHHHhc--CCcEE
Q 002863 91 EECPESRCTKSTYKLGKKVFRTLREVRSLRQEGDFKDVAQPVPE-NPVDERPLPPTVVGLQLTFDRVWRCLME--EHVGI 167 (873)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vgr~~~~~~l~~~L~~--~~~~v 167 (873)
.+|.+...++.+.............+.....+.+. ..........--+|.+.. ..+.+-+.= ..-..
T Consensus 281 ---------~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~r 350 (530)
T COG0488 281 ---------KSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDR 350 (530)
T ss_pred ---------HHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCE
Q ss_pred EEEEeCCCCcHHHHHHHHHhhhccCCCCCc-----eEEEEEeCCcccH-----------------HHHHHHHHHHhCCCC
Q 002863 168 VGLYGMGGVGKTTLLTQINNRFFDTPNHFD-----FVIWVVVSRDLQL-----------------EKIQEIIAKKIGLFN 225 (873)
Q Consensus 168 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-----~~~wv~~s~~~~~-----------------~~~~~~i~~~l~~~~ 225 (873)
|+|+|+.|+|||||.+.+............ .+.++.-...... ..-.+..+.+++...
T Consensus 351 iaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~ 430 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG 430 (530)
T ss_pred EEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh
Q ss_pred ccc-----cccCHHHHHHHHHHHhccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhhhccccccceee
Q 002863 226 ESW-----KNKSMQEKAQQIFNILSKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVCGQMEAHRSFKV 300 (873)
Q Consensus 226 ~~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 300 (873)
+.. .-+.-+...-.+...+-.++=+||||.--+.-|.+.+...-..-..-...||+.|.++....... .+.+.+
T Consensus 431 ~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va-~~i~~~ 509 (530)
T COG0488 431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVA-TRIWLV 509 (530)
T ss_pred HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhc-ceEEEE
Q ss_pred cc
Q 002863 301 EC 302 (873)
Q Consensus 301 ~~ 302 (873)
.+
T Consensus 510 ~~ 511 (530)
T COG0488 510 ED 511 (530)
T ss_pred cC
No 439
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.37 E-value=0.052 Score=49.97 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=28.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 206 (873)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4899999999999999999999872 34555555555544
No 440
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.36 E-value=0.19 Score=56.30 Aligned_cols=95 Identities=21% Similarity=0.268 Sum_probs=51.2
Q ss_pred HHHHHHHhcC--CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc---
Q 002863 154 DRVWRCLMEE--HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW--- 228 (873)
Q Consensus 154 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--- 228 (873)
.++-+.|..+ .-.++.|.|.+|+|||||+.++.....+ .. ..++|++..+. ..++.. -++.++...+..
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~--~g-~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~ 154 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK--NQ-MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVL 154 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh--cC-CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEc
Confidence 3444444332 4579999999999999999998776511 11 34777765543 333322 233444322110
Q ss_pred cccCHHHHHHHHHHHhccCCeEEEEeccc
Q 002863 229 KNKSMQEKAQQIFNILSKKKFVLLLDDMW 257 (873)
Q Consensus 229 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 257 (873)
...+.+.....+. +.+.-++|+|.+.
T Consensus 155 ~e~~~~~I~~~i~---~~~~~~vVIDSIq 180 (454)
T TIGR00416 155 SETNWEQICANIE---EENPQACVIDSIQ 180 (454)
T ss_pred CCCCHHHHHHHHH---hcCCcEEEEecch
Confidence 1223333332222 2355578888873
No 441
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=1.1 Score=51.10 Aligned_cols=149 Identities=19% Similarity=0.260 Sum_probs=79.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH-Hh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN-IL 244 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l 244 (873)
.-|.++|++|+|||-||.+++... . .-+|+|-.+ +++. +.+| .+++. .+.+.. .-
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~-~-------~~fisvKGP----ElL~---KyIG--------aSEq~-vR~lF~rA~ 757 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNS-N-------LRFISVKGP----ELLS---KYIG--------ASEQN-VRDLFERAQ 757 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhC-C-------eeEEEecCH----HHHH---HHhc--------ccHHH-HHHHHHHhh
Confidence 457899999999999999998775 1 234555543 2222 2222 22333 333443 33
Q ss_pred ccCCeEEEEecccccc-----c--------cccccccCCCC-CCCCcEEEEEccchhhhhc----cc-cccceeeccCCh
Q 002863 245 SKKKFVLLLDDMWELV-----D--------LDQVGLPIPSR-TSVSNKVVFTTREFEVCGQ----ME-AHRSFKVECLRY 305 (873)
Q Consensus 245 ~~k~~LlVlDdv~~~~-----~--------~~~~~~~l~~~-~~~gs~iivTtR~~~v~~~----~~-~~~~~~l~~L~~ 305 (873)
.-+++.+.+|..+... | ..++...+... .-.|.-|+-.|..++.... .+ -.+.+.-+.-++
T Consensus 758 ~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~ 837 (952)
T KOG0735|consen 758 SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDE 837 (952)
T ss_pred ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCc
Confidence 5699999999986421 1 22333333221 1345566654444433211 11 122333344456
Q ss_pred hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch
Q 002863 306 DDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 306 ~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
.|-.++|+..........+.++ +.++.+..|.-
T Consensus 838 ~eRl~il~~ls~s~~~~~~vdl----~~~a~~T~g~t 870 (952)
T KOG0735|consen 838 PERLEILQVLSNSLLKDTDVDL----ECLAQKTDGFT 870 (952)
T ss_pred HHHHHHHHHHhhccCCccccch----HHHhhhcCCCc
Confidence 7777888776654332333333 55666666654
No 442
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.34 E-value=0.054 Score=61.22 Aligned_cols=55 Identities=24% Similarity=0.327 Sum_probs=42.5
Q ss_pred cccchhHHHHHHHHHHhc-----CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEe
Q 002863 145 TVVGLQLTFDRVWRCLME-----EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV 204 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 204 (873)
+++-...-++++.+||.. ...+++.+.|++|+||||.++.+++.. .|+.+-|...
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~np 79 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWINP 79 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecCC
Confidence 344455677888888864 235699999999999999999999876 5777778653
No 443
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.34 E-value=0.058 Score=61.84 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=37.7
Q ss_pred cccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+++|.+..++.+...+......-|.|+|++|+||||+|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999887766555667899999999999999998653
No 444
>PRK05922 type III secretion system ATPase; Validated
Probab=94.34 E-value=0.12 Score=56.64 Aligned_cols=90 Identities=12% Similarity=0.221 Sum_probs=50.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc-ccHHHHHHHHHHHhCCCCccc----cccCHHH---
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQEIIAKKIGLFNESW----KNKSMQE--- 235 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~~--- 235 (873)
.-..++|.|..|+|||||++.+.+.. ..+....+.++.. ....+.+.+............ .+.....
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 45579999999999999999998764 1233333333332 233445544443332211100 1111111
Q ss_pred ---HHHHHHHHh--ccCCeEEEEecccc
Q 002863 236 ---KAQQIFNIL--SKKKFVLLLDDMWE 258 (873)
Q Consensus 236 ---~~~~l~~~l--~~k~~LlVlDdv~~ 258 (873)
.+-.+.+++ +|+++|+++||+-.
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122333444 58999999999843
No 445
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.33 E-value=0.042 Score=53.13 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|+|++|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999876
No 446
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.33 E-value=0.034 Score=53.69 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998775
No 447
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.33 E-value=0.03 Score=52.49 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+|.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47889999999999999998764
No 448
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.15 Score=60.27 Aligned_cols=102 Identities=20% Similarity=0.274 Sum_probs=64.8
Q ss_pred CcccchhHHHHHHHHHHhc------C--CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLME------E--HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQE 215 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 215 (873)
..++|-++.+..|.+.+.. + ......+.|+.|+|||-||++++... -+..+..+-++.|.- .+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~------~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEF------QE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhh------hh
Confidence 3467777777777777753 1 35577889999999999999998876 445555555555432 22
Q ss_pred HHHHHhCCCCccccccCHHHHHHHHHHHhccCCe-EEEEeccccc
Q 002863 216 IIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKF-VLLLDDMWEL 259 (873)
Q Consensus 216 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~ 259 (873)
+.+-++.+. .+.. .+....|.+.++.++| +|.||||...
T Consensus 633 -vskligsp~-gyvG---~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 -VSKLIGSPP-GYVG---KEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred -hhhccCCCc-cccc---chhHHHHHHHHhcCCceEEEEechhhc
Confidence 333334322 1112 2233467778888887 5557999653
No 449
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.32 E-value=0.22 Score=55.00 Aligned_cols=92 Identities=18% Similarity=0.338 Sum_probs=56.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-cHHHHHHHHHHHhCCCCcc----ccccCHHHH--
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQEIIAKKIGLFNES----WKNKSMQEK-- 236 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~-- 236 (873)
.-.-++|.|.+|+|||||+.++.... .. .+=+.++++-+.+.. ...++.+++...-.+.... ..+......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~-~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNI-AK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-Hh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45689999999999999999887765 21 222466777776543 4566777666543322110 011112111
Q ss_pred ----HHHHHHHh---ccCCeEEEEeccc
Q 002863 237 ----AQQIFNIL---SKKKFVLLLDDMW 257 (873)
Q Consensus 237 ----~~~l~~~l---~~k~~LlVlDdv~ 257 (873)
+-.+.+++ +|+.+|+++||+-
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 22344555 6799999999984
No 450
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.31 E-value=0.031 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 451
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.27 E-value=0.12 Score=50.26 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=22.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+.|.|+|+.|+||+||++.+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3679999999999999999998875
No 452
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.22 E-value=0.062 Score=57.29 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=37.9
Q ss_pred cccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+||.++.+..++-.+.+....-+.|.|..|+|||||++.+..-.
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 579999999888777777666677899999999999999997654
No 453
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.21 E-value=0.035 Score=53.94 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 479999999999999999998864
No 454
>PRK13949 shikimate kinase; Provisional
Probab=94.21 E-value=0.037 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
-|.|+|++|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999886
No 455
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.19 E-value=0.19 Score=58.98 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=52.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCccc--HHHHHHHHHHHhCCCCccccccCHHHHHHHHHH
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ--LEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN 242 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (873)
..||+++|+.|+||||++.+++... ........+..++.. .+. ..+-++...+.++++.. ...+..+..+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~- 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA- 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-
Confidence 4699999999999999999888765 212222345555433 233 44556677777776432 2234555444443
Q ss_pred HhccCCeEEEEeccc
Q 002863 243 ILSKKKFVLLLDDMW 257 (873)
Q Consensus 243 ~l~~k~~LlVlDdv~ 257 (873)
.++++. +|++|=.-
T Consensus 260 ~~~~~D-~VLIDTAG 273 (767)
T PRK14723 260 ALGDKH-LVLIDTVG 273 (767)
T ss_pred HhcCCC-EEEEeCCC
Confidence 344443 66777764
No 456
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.16 E-value=0.29 Score=51.98 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999998877
No 457
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.16 E-value=0.053 Score=57.83 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=39.4
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.+||-++.+..|+..+.+...+-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999988888888777777777799999999999999997754
No 458
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.45 Score=47.86 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=35.6
Q ss_pred cccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
++=|-+..+++|.+...= ...+-|.++|.+|.|||-||++|+|.-
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 456788888888887531 134567789999999999999999986
No 459
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.15 E-value=0.41 Score=51.44 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=39.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCccc--HHHHHHHHHHHhCCCC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ--LEKIQEIIAKKIGLFN 225 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~ 225 (873)
.+.||-.+|.-|+||||.|-++++.. +. ....+-+...+.+. .-+-++.++++.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~l-kk---~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYL-KK---KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHH-HH---cCCceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 46799999999999999999999888 22 22233333333333 3456788888887643
No 460
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.13 E-value=0.35 Score=51.17 Aligned_cols=89 Identities=24% Similarity=0.280 Sum_probs=51.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeC-CcccHHHHHHHHHHHhCCCCcc----ccccCHHH---
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVS-RDLQLEKIQEIIAKKIGLFNES----WKNKSMQE--- 235 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~--- 235 (873)
....++|+|..|+|||||++.+.+.. . -+..+...+. +..+..++.......-++.... ..+.....
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 44688999999999999999988765 2 1233334443 3335566665555543322110 01111111
Q ss_pred ---HHHHHHHHh--ccCCeEEEEeccc
Q 002863 236 ---KAQQIFNIL--SKKKFVLLLDDMW 257 (873)
Q Consensus 236 ---~~~~l~~~l--~~k~~LlVlDdv~ 257 (873)
.+-.+.+++ +|+.+|+++||+-
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 122223333 5899999999984
No 461
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.13 E-value=0.046 Score=51.91 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999999876
No 462
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.10 E-value=0.13 Score=52.54 Aligned_cols=90 Identities=12% Similarity=0.125 Sum_probs=51.0
Q ss_pred CcEEEEEEeCCCCcHHHHH-HHHHhhhccCCCCCceE-EEEEeCCcc-cHHHHHHHHHHHhCCCCcc----ccccCHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLL-TQINNRFFDTPNHFDFV-IWVVVSRDL-QLEKIQEIIAKKIGLFNES----WKNKSMQEK 236 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~ 236 (873)
.-.-++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+.. ...++.+.+.+.-...... ..+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4457899999999999996 5665543 22444 556666543 4556666666432221100 011111111
Q ss_pred ------HHHHHHHh--ccCCeEEEEecccc
Q 002863 237 ------AQQIFNIL--SKKKFVLLLDDMWE 258 (873)
Q Consensus 237 ------~~~l~~~l--~~k~~LlVlDdv~~ 258 (873)
+-.+.+++ +|+.+|+|+||+-.
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 12222333 58999999999843
No 463
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.08 E-value=0.055 Score=53.65 Aligned_cols=61 Identities=21% Similarity=0.330 Sum_probs=38.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEE-------EeCCcccHHHH--HHHHHHHhCCCC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWV-------VVSRDLQLEKI--QEIIAKKIGLFN 225 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv-------~~s~~~~~~~~--~~~i~~~l~~~~ 225 (873)
....|.++||+|+||||..+.++.+. ..++.-..++=. ....+.++++. .++..++.++.+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 45678889999999999999998877 223322223222 12223355543 567777776654
No 464
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.08 E-value=0.064 Score=52.82 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45689999999999999999987654
No 465
>PRK14530 adenylate kinase; Provisional
Probab=94.08 E-value=0.04 Score=55.25 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998876
No 466
>PTZ00494 tuzin-like protein; Provisional
Probab=94.08 E-value=0.5 Score=50.80 Aligned_cols=163 Identities=15% Similarity=0.068 Sum_probs=98.5
Q ss_pred CCcccchhHHHHHHHHHHhc---CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHH
Q 002863 143 PPTVVGLQLTFDRVWRCLME---EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 219 (873)
+..+|.|+.+-..+.+.|.+ ..++++++.|.-|.||++|.+...... .+ ..++|.+... ++-++.|.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~~-----paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-GV-----ALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-CC-----CeEEEEecCC---cchHHHHHH
Confidence 45689999887777777654 478999999999999999998777665 21 3577887755 445788888
Q ss_pred HhCCCCccccccCHHHHHHHHH---HHhccCCeEEEEeccccccccccc---cccCCCCCCCCcEEEEEccchhhhhcc-
Q 002863 220 KIGLFNESWKNKSMQEKAQQIF---NILSKKKFVLLLDDMWELVDLDQV---GLPIPSRTSVSNKVVFTTREFEVCGQM- 292 (873)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~---~~l~~k~~LlVlDdv~~~~~~~~~---~~~l~~~~~~gs~iivTtR~~~v~~~~- 292 (873)
.++.+.-+....-.+-..+..+ ....|+.-+||+-= .+..++..+ ...+... ..-|.|++----+.+....
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkL-REGssL~RVYnE~vaLacD-rRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRL-REGSDLGRVYGEVVSLVSD-CQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEe-ccCCcHHHHHHHHHHHHcc-chhheeeeechHhhhchhhc
Confidence 9988643222222222222222 22346666666531 111222111 0112222 4456777655544432211
Q ss_pred --ccccceeeccCChhhhHHHHHHHh
Q 002863 293 --EAHRSFKVECLRYDDAWKLFELKV 316 (873)
Q Consensus 293 --~~~~~~~l~~L~~~e~~~lf~~~~ 316 (873)
..-..|.+++++.++|.++-++..
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhccc
Confidence 123468899999999999887664
No 467
>PRK13947 shikimate kinase; Provisional
Probab=94.08 E-value=0.043 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
-|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 468
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.05 E-value=0.069 Score=49.92 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 151 LTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 151 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.+++|.+++.+ ++++++|..|+|||||+..+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 346777777754 689999999999999999998874
No 469
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.04 E-value=0.069 Score=57.59 Aligned_cols=101 Identities=18% Similarity=0.282 Sum_probs=53.8
Q ss_pred HHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHH--HHHHHhCCCCccccccCH
Q 002863 156 VWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQE--IIAKKIGLFNESWKNKSM 233 (873)
Q Consensus 156 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~--~i~~~l~~~~~~~~~~~~ 233 (873)
+.+.+.. ..+.|.|+|+.|+||||+++.+.+........=..++.+.-.-.+....+.. ....|.. ...+.
T Consensus 126 ~~~~~~~-~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~------v~~~~ 198 (358)
T TIGR02524 126 IIDAIAP-QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSE------IPRHL 198 (358)
T ss_pred HHHHHhc-cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeee------ccccc
Confidence 4444443 4579999999999999999998876511001101222221111121111110 0001110 11112
Q ss_pred HHHHHHHHHHhccCCeEEEEeccccccccc
Q 002863 234 QEKAQQIFNILSKKKFVLLLDDMWELVDLD 263 (873)
Q Consensus 234 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 263 (873)
......++..|+..+-.+++..+.+.....
T Consensus 199 ~~~~~~l~~aLR~~Pd~i~vGEiRd~et~~ 228 (358)
T TIGR02524 199 NNFAAGVRNALRRKPHAILVGEARDAETIS 228 (358)
T ss_pred cCHHHHHHHHhccCCCEEeeeeeCCHHHHH
Confidence 334556677888899999999987766554
No 470
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.04 E-value=0.21 Score=57.91 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+++|+|+.|+|||||++.++...
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998764
No 471
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.03 E-value=0.73 Score=58.66 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+-|.++|++|+|||.||++++.+.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc
Confidence 4567899999999999999999986
No 472
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.02 E-value=0.45 Score=50.09 Aligned_cols=26 Identities=42% Similarity=0.571 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.++++.|+.|+|||||.+.+....
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 44699999999999999999998865
No 473
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.98 E-value=0.04 Score=51.16 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHH
Q 002863 167 IVGLYGMGGVGKTTLLTQIN 186 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~ 186 (873)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 474
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.97 E-value=0.046 Score=48.80 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.2
Q ss_pred EEEEeCCCCcHHHHHHHHHhhh
Q 002863 168 VGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 168 i~I~G~gGiGKTtLa~~v~~~~ 189 (873)
|.|+|..|+|||||++.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998765
No 475
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.94 E-value=1.8 Score=45.52 Aligned_cols=166 Identities=12% Similarity=0.052 Sum_probs=90.0
Q ss_pred HHHHHHHHhcCC-cEEEEEEeCCCCcHHHHHHHHHhhhc--------cCCCCCceEEEEEe-CCcccHHHHHHHHHHHhC
Q 002863 153 FDRVWRCLMEEH-VGIVGLYGMGGVGKTTLLTQINNRFF--------DTPNHFDFVIWVVV-SRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 153 ~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~--------~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~ 222 (873)
++.+.+.+.++. .++..++|..|.||+++|..+.+... .....++ +.++.. +......++. .+.+.+.
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n-~~~~d~~g~~i~vd~Ir-~l~~~~~ 82 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPAN-IILFDIFDKDLSKSEFL-SAINKLY 82 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcc-eEEeccCCCcCCHHHHH-HHHHHhc
Confidence 344555565554 45677999999999999998877641 1111222 333321 1222233332 2333322
Q ss_pred CCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccc--cccccccCCCCCCCCcEEEEEccc-hhhhh-ccccccce
Q 002863 223 LFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD--LDQVGLPIPSRTSVSNKVVFTTRE-FEVCG-QMEAHRSF 298 (873)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~~gs~iivTtR~-~~v~~-~~~~~~~~ 298 (873)
..+ .-.+.+=++|+|++....+ ...+...+..- ..++.+|++|.+ ..+.. .......+
T Consensus 83 ~~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEP-p~~t~~il~~~~~~kll~TI~SRc~~~ 144 (299)
T PRK07132 83 FSS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEP-PKDTYFLLTTKNINKVLPTIVSRCQVF 144 (299)
T ss_pred cCC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCC-CCCeEEEEEeCChHhChHHHHhCeEEE
Confidence 110 0014677889999865432 33343344333 455666665543 44432 23456789
Q ss_pred eeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHH
Q 002863 299 KVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALIT 347 (873)
Q Consensus 299 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 347 (873)
++.++++++..+.+... + . + ++.+..++...+|.=-|+..
T Consensus 145 ~f~~l~~~~l~~~l~~~-~-~----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 145 NVKEPDQQKILAKLLSK-N-K----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred ECCCCCHHHHHHHHHHc-C-C----C---hhHHHHHHHHcCCHHHHHHH
Confidence 99999999998877654 1 1 1 23356666666663344444
No 476
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.93 E-value=0.066 Score=56.97 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=36.5
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.++|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+.+-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3579999998888765554445568899999999999999986654
No 477
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.91 E-value=0.086 Score=55.39 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=40.7
Q ss_pred CcccchhHHHHHHHHHHhc------CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLME------EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..++|.++.++++++.+.. ..-+|+.++|+.|.||||||..+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999864 356899999999999999999998876
No 478
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.91 E-value=0.33 Score=53.24 Aligned_cols=89 Identities=20% Similarity=0.307 Sum_probs=53.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-cHHHHHHHHHHHhCCCCcc----ccccCHHHH--
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQEIIAKKIGLFNES----WKNKSMQEK-- 236 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~-- 236 (873)
+-..++|.|..|+|||||.+.+++.. .-+.++++-+.+.. ...++.+..+..-++.... ..+......
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 45689999999999999999999875 22566777776543 3445554443332221110 011111111
Q ss_pred ----HHHHHHHh--ccCCeEEEEeccc
Q 002863 237 ----AQQIFNIL--SKKKFVLLLDDMW 257 (873)
Q Consensus 237 ----~~~l~~~l--~~k~~LlVlDdv~ 257 (873)
+-.+.+++ +|+++|+++||+-
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 12233444 5899999999984
No 479
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.90 E-value=0.044 Score=65.39 Aligned_cols=191 Identities=16% Similarity=0.107 Sum_probs=86.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc-ccccCHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES-WKNKSMQEKAQQIFN 242 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 242 (873)
+..+++|+|+.|.||||+.+.+.....-.... ++|.+.....+ .++..+...++....- ....+...-...+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 34799999999999999999886651000010 01111110000 0001111001100000 000111111222333
Q ss_pred Hhc--cCCeEEEEecccccccc---ccc----cccCCCCCCCCcEEEEEccchhhhhccccccceeec--cCChhhhHHH
Q 002863 243 ILS--KKKFVLLLDDMWELVDL---DQV----GLPIPSRTSVSNKVVFTTREFEVCGQMEAHRSFKVE--CLRYDDAWKL 311 (873)
Q Consensus 243 ~l~--~k~~LlVlDdv~~~~~~---~~~----~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~--~L~~~e~~~l 311 (873)
.+. ..+-|+++|..-...+. ..+ ...+. ..|+.+|+||...++.........+.-. .++.+ ....
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~---~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~-~l~p 471 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL---KQNAQVLITTHYKELKALMYNNEGVENASVLFDEE-TLSP 471 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH---hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCC-CCce
Confidence 333 47899999998754332 112 11221 3477999999998775432221111111 11111 1000
Q ss_pred HHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHHHHHch
Q 002863 312 FELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAMASRKTPREWEHAIEVLRSS 371 (873)
Q Consensus 312 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~l~~~ 371 (873)
.-+...+. +. ..-|-.|++++ |+|-.+.--|..+... ...+.+.+++.+...
T Consensus 472 ~Ykl~~G~---~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 472 TYKLLKGI---PG---ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIEKLSAL 523 (771)
T ss_pred EEEECCCC---CC---CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 00000000 11 23477787777 8888888877777552 344566666555554
No 480
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.89 E-value=0.023 Score=55.48 Aligned_cols=117 Identities=20% Similarity=0.180 Sum_probs=56.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhhccC-CCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc-ccccCHHHHHHHHHHHh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRFFDT-PNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES-WKNKSMQEKAQQIFNIL 244 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~~l 244 (873)
++.|+|+.|.||||+.+.+.-...-. ...| |.... ..+ .....+...++..... ....+......++...+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~-----v~a~~-~~~-~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l 73 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSF-----VPAES-AEL-PVFDRIFTRIGASDSLAQGLSTFMVEMKETANIL 73 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCC-----eeehh-eEe-cccceEEEEeCCCCchhccccHHHHHHHHHHHHH
Confidence 47899999999999999887332000 1111 11100 000 0000111111111000 01112223333455555
Q ss_pred cc--CCeEEEEeccccccccc-------cccccCCCCCCCCcEEEEEccchhhhhcc
Q 002863 245 SK--KKFVLLLDDMWELVDLD-------QVGLPIPSRTSVSNKVVFTTREFEVCGQM 292 (873)
Q Consensus 245 ~~--k~~LlVlDdv~~~~~~~-------~~~~~l~~~~~~gs~iivTtR~~~v~~~~ 292 (873)
.. ++-|+++|+.-...+.. .+...+.. ..++.+|++|...++....
T Consensus 74 ~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~--~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 74 KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE--KIGALTLFATHYHELTKLA 128 (185)
T ss_pred HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHHHh
Confidence 44 88999999986433221 11111211 1367899999988776544
No 481
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.83 E-value=0.066 Score=53.34 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=26.7
Q ss_pred HHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 159 CLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 159 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+.+.++++|+++|..|+|||||..++.+..
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445689999999999999999999998875
No 482
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.17 Score=49.96 Aligned_cols=45 Identities=27% Similarity=0.291 Sum_probs=33.3
Q ss_pred cccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
++=|-.+.++++.+...- +..+-|.++|++|.|||-+|++|+|+.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 344566677776655421 345668899999999999999999986
No 483
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.82 E-value=0.072 Score=56.19 Aligned_cols=148 Identities=19% Similarity=0.246 Sum_probs=78.9
Q ss_pred ccchhHHHHHHHHHHhc-----------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCC--C---ceEEEE-
Q 002863 146 VVGLQLTFDRVWRCLME-----------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--F---DFVIWV- 202 (873)
Q Consensus 146 ~vgr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f---~~~~wv- 202 (873)
..|-..+...|.+.+.. ....+++|+|..|+||||+.+++.... ..... + ...+-+
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~-~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ-KGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh-hcccccccCCCCCceecc
Confidence 34555667777666532 134589999999999999999988765 11110 0 011111
Q ss_pred --------EeCC--cccHHHHHHHH-------------HHHhCCCCcc-----c-cccCHHHHHHHHHHHhccCCeEEEE
Q 002863 203 --------VVSR--DLQLEKIQEII-------------AKKIGLFNES-----W-KNKSMQEKAQQIFNILSKKKFVLLL 253 (873)
Q Consensus 203 --------~~s~--~~~~~~~~~~i-------------~~~l~~~~~~-----~-~~~~~~~~~~~l~~~l~~k~~LlVl 253 (873)
.-.- .++-..+++.+ +...|+.... + +-.+.+....+|...+..+.-+++.
T Consensus 452 ~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 452 KNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 1011 12212333333 3333332211 1 1223344456677788888889999
Q ss_pred ecccccccc-------ccccccCCCCCCCCcEEEEEccchhhhhccccccc
Q 002863 254 DDMWELVDL-------DQVGLPIPSRTSVSNKVVFTTREFEVCGQMEAHRS 297 (873)
Q Consensus 254 Ddv~~~~~~-------~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~ 297 (873)
|.....-|- .++... .. ..|+.+++.|+.+++......+..
T Consensus 532 DEF~AhLD~~TA~rVArkisel-aR--e~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISEL-AR--EAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHH-HH--HhCCeEEEEecCHHHHhccCCcee
Confidence 987543221 111111 11 357778888888888776654443
No 484
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.82 E-value=0.058 Score=52.88 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998875
No 485
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.80 E-value=0.048 Score=53.25 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997764
No 486
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.78 E-value=0.05 Score=51.23 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEEeCCCCcHHHHHHHHHhhh
Q 002863 168 VGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 168 i~I~G~gGiGKTtLa~~v~~~~ 189 (873)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998775
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.74 E-value=0.059 Score=46.43 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHH
Q 002863 165 VGIVGLYGMGGVGKTTLLTQIN 186 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~ 186 (873)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999875
No 488
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.74 E-value=0.32 Score=53.55 Aligned_cols=93 Identities=25% Similarity=0.340 Sum_probs=57.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-cHHHHHHHHHHHhCCCCcc----ccccCHHH---
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQEIIAKKIGLFNES----WKNKSMQE--- 235 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~--- 235 (873)
.-.-++|.|.+|+|||+|+.++.... . +.+-+.++++-+.+.. ...++.+.+...-.+.... ..+.....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 45679999999999999999988775 2 2234678888877654 4556666665432221110 01111111
Q ss_pred ---HHHHHHHHh---ccCCeEEEEecccc
Q 002863 236 ---KAQQIFNIL---SKKKFVLLLDDMWE 258 (873)
Q Consensus 236 ---~~~~l~~~l---~~k~~LlVlDdv~~ 258 (873)
.+-.+.+++ +|+.+|+++||+-.
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 122334555 46899999999843
No 489
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.73 E-value=0.05 Score=54.17 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998875
No 490
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.70 E-value=0.044 Score=52.28 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEeCCCCcHHHHHHHHHhhh
Q 002863 168 VGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 168 i~I~G~gGiGKTtLa~~v~~~~ 189 (873)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998875
No 491
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.69 E-value=0.052 Score=51.67 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=19.3
Q ss_pred EEEEeCCCCcHHHHHHHHHhhh
Q 002863 168 VGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 168 i~I~G~gGiGKTtLa~~v~~~~ 189 (873)
|.|.|.+|+|||||++.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999998876
No 492
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.68 E-value=0.038 Score=54.57 Aligned_cols=120 Identities=15% Similarity=0.072 Sum_probs=59.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccC-CCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc-cccCHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDT-PNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW-KNKSMQEKAQQIF 241 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 241 (873)
...++.|.|+.|.||||+.+.++....-. ...| |.+.. .. -.+.+.|...++...... ..........++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~-----vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~ 100 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCF-----VPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETA 100 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC-----cchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHH
Confidence 34789999999999999999886442100 1111 11110 00 012223333333221000 0111111122223
Q ss_pred HHh--ccCCeEEEEecccccc---cc----ccccccCCCCCCCCcEEEEEccchhhhhccc
Q 002863 242 NIL--SKKKFVLLLDDMWELV---DL----DQVGLPIPSRTSVSNKVVFTTREFEVCGQME 293 (873)
Q Consensus 242 ~~l--~~k~~LlVlDdv~~~~---~~----~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~ 293 (873)
..+ ..++-|+++|+.-... +. ..+...+. ..|+.+|+||.+.+++....
T Consensus 101 ~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~---~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 101 YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI---KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH---hcCCEEEEECChHHHHHHhh
Confidence 222 3578899999984322 21 11222222 23779999999988876654
No 493
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.68 E-value=0.16 Score=51.63 Aligned_cols=53 Identities=28% Similarity=0.330 Sum_probs=28.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhhcc----CCCCCceEEEEEeCCcccHHHHHHHHHH
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRFFD----TPNHFDFVIWVVVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~~~----~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 219 (873)
+..|+|++|.||||++..+.....+ ....-...+-++...+..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 7889999999999776665555411 0123334444555555455555555543
No 494
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.66 E-value=0.16 Score=50.04 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|.|+.|.|||||.+.+..-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998753
No 495
>PRK14527 adenylate kinase; Provisional
Probab=93.65 E-value=0.058 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|.|+|++|+||||+|+.++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998776
No 496
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.62 E-value=0.24 Score=54.33 Aligned_cols=27 Identities=37% Similarity=0.400 Sum_probs=23.3
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..-..++|+|..|+|||||++.+....
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhccc
Confidence 355789999999999999999988764
No 497
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.62 E-value=0.059 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..|.|+|+.|+||||+|+.+.+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 468999999999999999999875
No 498
>PRK13975 thymidylate kinase; Provisional
Probab=93.61 E-value=0.061 Score=53.11 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=22.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+|+|.|+.|+||||+|+.+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999987
No 499
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.60 E-value=0.033 Score=32.63 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=18.1
Q ss_pred CCcEeeccccccccccChhhhCCC
Q 002863 596 NLKCLNLEYTFRLSRISPQVISNL 619 (873)
Q Consensus 596 ~L~~L~L~~~~~l~~l~~~~i~~l 619 (873)
+|++|++++| .++.+|+. |++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~-~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS-FSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTT-TTT-
T ss_pred CccEEECCCC-cCEeCChh-hcCC
Confidence 5899999999 89999887 7654
No 500
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.59 E-value=0.31 Score=53.53 Aligned_cols=91 Identities=21% Similarity=0.287 Sum_probs=51.4
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC-cccHHHHHHHHHHHhCCCC-----ccccccCHHHH
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-DLQLEKIQEIIAKKIGLFN-----ESWKNKSMQEK 236 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~ 236 (873)
..-..++|+|..|+|||||++.+.+.. ..+..+++.+.. ...+.+........-.... ...+.......
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 345689999999999999999988764 234455555554 3344455555432111100 00011111111
Q ss_pred -----HHHHHHHh--ccCCeEEEEecccc
Q 002863 237 -----AQQIFNIL--SKKKFVLLLDDMWE 258 (873)
Q Consensus 237 -----~~~l~~~l--~~k~~LlVlDdv~~ 258 (873)
+-.+.+++ +|+++|+++||+-.
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 22233444 58999999999843
Done!