Query 002863
Match_columns 873
No_of_seqs 781 out of 4554
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 04:32:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8E-49 2.7E-53 451.4 15.3 309 147-478 131-470 (549)
2 1vt4_I APAF-1 related killer D 100.0 7.2E-40 2.4E-44 378.1 16.9 285 145-472 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 6.8E-37 2.3E-41 391.5 28.4 310 143-478 123-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.2E-34 4.1E-39 339.2 23.8 304 143-475 123-448 (591)
5 2id5_A Lingo-1, leucine rich r 99.9 1.4E-25 4.9E-30 255.4 23.4 309 485-835 14-331 (477)
6 4fmz_A Internalin; leucine ric 99.9 5.5E-25 1.9E-29 239.5 22.6 271 486-799 48-321 (347)
7 3v47_A TOLL-like receptor 5B a 99.9 1.3E-25 4.4E-30 254.3 18.2 141 485-630 13-164 (455)
8 4fmz_A Internalin; leucine ric 99.9 1.2E-24 4.1E-29 236.8 24.2 284 500-829 40-326 (347)
9 2id5_A Lingo-1, leucine rich r 99.9 7.1E-25 2.4E-29 249.6 21.0 304 507-843 14-325 (477)
10 3t6q_A CD180 antigen; protein- 99.9 3.3E-24 1.1E-28 252.1 24.2 331 485-835 15-436 (606)
11 3o6n_A APL1; leucine-rich repe 99.9 1.8E-24 6.3E-29 239.3 19.7 284 502-831 43-335 (390)
12 2z7x_B TOLL-like receptor 1, v 99.9 4.5E-24 1.5E-28 245.9 21.2 138 484-630 2-148 (520)
13 3bz5_A Internalin-J, INLJ; leu 99.9 3E-24 1E-28 241.1 18.6 290 500-835 38-329 (457)
14 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.3E-24 2.2E-28 246.8 21.6 138 484-630 33-179 (562)
15 2z81_A CD282 antigen, TOLL-lik 99.9 5.8E-24 2E-28 246.9 21.0 165 487-655 10-182 (549)
16 1o6v_A Internalin A; bacterial 99.9 1.4E-23 4.9E-28 237.7 23.7 245 489-764 53-321 (466)
17 3j0a_A TOLL-like receptor 5; m 99.9 1E-23 3.4E-28 256.5 23.9 303 484-823 6-391 (844)
18 4eco_A Uncharacterized protein 99.9 1.1E-24 3.9E-29 255.8 14.9 317 503-851 248-600 (636)
19 3oja_B Anopheles plasmodium-re 99.9 4.3E-24 1.5E-28 249.5 19.3 145 502-653 49-200 (597)
20 4ecn_A Leucine-rich repeat pro 99.9 3.1E-24 1.1E-28 256.1 18.3 308 500-832 444-824 (876)
21 1ziw_A TOLL-like receptor 3; i 99.9 1.6E-23 5.5E-28 249.7 24.2 316 485-823 7-363 (680)
22 3v47_A TOLL-like receptor 5B a 99.9 3.7E-24 1.2E-28 242.4 17.7 291 507-831 13-388 (455)
23 3rgz_A Protein brassinosteroid 99.9 3.3E-24 1.1E-28 258.0 17.1 200 550-764 267-478 (768)
24 3t6q_A CD180 antigen; protein- 99.9 1.9E-23 6.5E-28 245.6 22.7 185 568-765 274-462 (606)
25 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-23 4.2E-28 247.2 20.9 91 727-832 445-539 (606)
26 2ft3_A Biglycan; proteoglycan, 99.9 8.8E-24 3E-28 228.2 18.0 266 505-800 34-305 (332)
27 2z63_A TOLL-like receptor 4, v 99.9 7.2E-24 2.5E-28 247.4 18.6 138 487-629 12-158 (570)
28 3o6n_A APL1; leucine-rich repe 99.9 2.1E-23 7E-28 230.9 20.9 272 523-836 42-330 (390)
29 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-23 4.1E-28 247.3 19.9 141 485-630 14-163 (606)
30 1xku_A Decorin; proteoglycan, 99.9 2.4E-23 8.2E-28 224.6 20.6 292 505-834 32-329 (330)
31 1o6v_A Internalin A; bacterial 99.9 7.6E-23 2.6E-27 231.7 23.0 295 501-835 43-364 (466)
32 4ecn_A Leucine-rich repeat pro 99.9 1.1E-23 3.6E-28 251.5 16.6 295 523-835 445-817 (876)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.6E-23 1.9E-27 238.8 21.0 143 505-655 32-179 (562)
34 4eco_A Uncharacterized protein 99.9 2.2E-23 7.4E-28 244.9 17.5 319 484-831 251-604 (636)
35 3bz5_A Internalin-J, INLJ; leu 99.9 7.9E-23 2.7E-27 229.6 20.8 316 484-834 44-365 (457)
36 2z7x_B TOLL-like receptor 1, v 99.9 6.3E-23 2.2E-27 236.3 20.3 139 507-655 3-148 (520)
37 3oja_B Anopheles plasmodium-re 99.9 5.8E-23 2E-27 240.0 20.1 279 523-833 48-343 (597)
38 3rgz_A Protein brassinosteroid 99.9 1.8E-23 6.1E-28 251.6 16.3 315 485-830 226-555 (768)
39 2z63_A TOLL-like receptor 4, v 99.9 5E-23 1.7E-27 240.3 19.4 332 484-835 30-432 (570)
40 2z81_A CD282 antigen, TOLL-lik 99.9 6.8E-23 2.3E-27 237.9 18.8 167 484-654 28-205 (549)
41 1ziw_A TOLL-like receptor 3; i 99.9 7.2E-22 2.4E-26 235.4 23.6 332 484-823 27-440 (680)
42 4g8a_A TOLL-like receptor 4; l 99.9 2.6E-22 8.9E-27 237.5 19.6 141 486-630 35-183 (635)
43 1ogq_A PGIP-2, polygalacturona 99.9 9.6E-23 3.3E-27 217.6 12.7 245 527-804 51-306 (313)
44 3j0a_A TOLL-like receptor 5; m 99.9 4E-22 1.4E-26 242.4 19.5 192 507-706 7-214 (844)
45 2z80_A TOLL-like receptor 2, v 99.9 7.8E-22 2.7E-26 214.9 16.4 248 509-807 36-294 (353)
46 3zyi_A Leucine-rich repeat-con 99.9 1.8E-21 6.1E-26 219.5 18.2 236 487-765 59-303 (452)
47 2ft3_A Biglycan; proteoglycan, 99.9 2.7E-21 9.1E-26 208.7 18.3 280 485-800 36-331 (332)
48 3zyj_A Leucine-rich repeat-con 99.9 2E-21 6.7E-26 218.4 18.0 236 487-765 48-292 (440)
49 2z80_A TOLL-like receptor 2, v 99.9 6.4E-22 2.2E-26 215.6 13.4 268 485-765 34-314 (353)
50 1xku_A Decorin; proteoglycan, 99.9 7.5E-21 2.6E-25 205.1 21.0 280 485-799 34-329 (330)
51 1ogq_A PGIP-2, polygalacturona 99.9 5.3E-22 1.8E-26 211.8 10.3 242 504-765 50-304 (313)
52 2z66_A Variable lymphocyte rec 99.9 3E-21 1E-25 205.8 15.9 239 508-764 11-260 (306)
53 4fcg_A Uncharacterized protein 99.8 1.3E-20 4.3E-25 202.4 18.1 226 524-821 79-309 (328)
54 4fcg_A Uncharacterized protein 99.8 1.2E-20 4E-25 202.6 15.9 216 503-762 80-311 (328)
55 3o53_A Protein LRIM1, AGAP0063 99.8 1.8E-21 6.3E-26 208.3 7.3 261 506-806 12-279 (317)
56 3zyj_A Leucine-rich repeat-con 99.8 4.3E-20 1.5E-24 207.5 16.7 215 484-741 66-290 (440)
57 2z66_A Variable lymphocyte rec 99.8 1.9E-20 6.4E-25 199.7 13.0 243 486-744 11-262 (306)
58 3zyi_A Leucine-rich repeat-con 99.8 3.8E-20 1.3E-24 208.6 16.0 216 484-742 77-302 (452)
59 1ozn_A Reticulon 4 receptor; N 99.8 1.2E-19 4.2E-24 191.1 18.6 217 507-765 14-238 (285)
60 3g06_A SSPH2 (leucine-rich rep 99.8 3.3E-19 1.1E-23 205.9 21.9 254 484-800 42-295 (622)
61 1jl5_A Outer protein YOPM; leu 99.8 3.6E-19 1.2E-23 199.6 21.6 272 484-823 93-367 (454)
62 4g8a_A TOLL-like receptor 4; l 99.8 2.5E-19 8.4E-24 211.9 20.1 326 484-850 54-588 (635)
63 3g06_A SSPH2 (leucine-rich rep 99.8 5.8E-19 2E-23 203.9 21.5 252 505-824 41-295 (622)
64 1ozn_A Reticulon 4 receptor; N 99.8 1.2E-19 4.1E-24 191.2 14.5 218 485-744 14-239 (285)
65 1wwl_A Monocyte differentiatio 99.8 9.7E-21 3.3E-25 202.1 4.1 243 504-764 43-308 (312)
66 1jl5_A Outer protein YOPM; leu 99.8 1.2E-18 4E-23 195.4 20.7 256 484-804 113-371 (454)
67 3o53_A Protein LRIM1, AGAP0063 99.8 1.9E-19 6.4E-24 192.6 13.4 266 527-834 11-283 (317)
68 3oja_A Leucine-rich immune mol 99.8 1.3E-19 4.5E-24 205.3 9.3 215 524-765 32-250 (487)
69 2z62_A TOLL-like receptor 4, v 99.8 4.6E-18 1.6E-22 178.1 16.9 198 526-765 28-237 (276)
70 1z7x_W Ribonuclease inhibitor; 99.8 2.2E-19 7.7E-24 203.4 6.1 255 504-765 3-297 (461)
71 3oja_A Leucine-rich immune mol 99.8 1.3E-18 4.5E-23 197.0 12.1 232 550-821 32-270 (487)
72 1p9a_G Platelet glycoprotein I 99.7 1.2E-17 4.1E-22 175.7 16.7 124 502-630 8-134 (290)
73 1z7x_W Ribonuclease inhibitor; 99.7 3.5E-19 1.2E-23 201.8 4.1 304 503-823 55-408 (461)
74 1h6u_A Internalin H; cell adhe 99.7 1.7E-17 5.8E-22 176.3 16.6 189 524-765 39-230 (308)
75 1wwl_A Monocyte differentiatio 99.7 5.1E-19 1.8E-23 188.8 4.6 222 524-764 41-286 (312)
76 2o6q_A Variable lymphocyte rec 99.7 2.8E-17 9.5E-22 171.4 17.7 193 506-764 18-217 (270)
77 3rfs_A Internalin B, repeat mo 99.7 3.4E-18 1.2E-22 178.5 10.3 120 506-630 21-143 (272)
78 2xwt_C Thyrotropin receptor; s 99.7 1.2E-17 4.2E-22 170.7 14.0 101 516-623 23-130 (239)
79 3rfs_A Internalin B, repeat mo 99.7 3.2E-18 1.1E-22 178.7 9.8 194 526-763 19-216 (272)
80 2z62_A TOLL-like receptor 4, v 99.7 1.9E-17 6.5E-22 173.4 14.2 219 486-743 11-237 (276)
81 2o6q_A Variable lymphocyte rec 99.7 3.6E-17 1.2E-21 170.5 15.0 143 484-630 18-167 (270)
82 4ay9_X Follicle-stimulating ho 99.7 4.2E-17 1.4E-21 176.9 14.9 118 509-630 14-138 (350)
83 2ca6_A RAN GTPase-activating p 99.7 3.2E-18 1.1E-22 188.8 4.8 236 523-765 29-316 (386)
84 2xwt_C Thyrotropin receptor; s 99.7 6.3E-17 2.2E-21 165.4 13.1 175 552-764 31-217 (239)
85 1h6u_A Internalin H; cell adhe 99.7 1.9E-16 6.6E-21 168.2 17.0 209 530-807 23-234 (308)
86 4ay9_X Follicle-stimulating ho 99.7 1.7E-16 5.9E-21 172.1 15.1 234 555-821 12-254 (350)
87 3ogk_B Coronatine-insensitive 99.7 3.4E-17 1.2E-21 191.7 9.8 297 503-828 191-527 (592)
88 2ast_B S-phase kinase-associat 99.7 7.7E-17 2.6E-21 174.2 9.3 120 506-630 49-178 (336)
89 2ast_B S-phase kinase-associat 99.7 4.6E-17 1.6E-21 175.9 7.4 124 505-630 71-205 (336)
90 4glp_A Monocyte differentiatio 99.7 1E-16 3.4E-21 170.9 9.3 201 551-765 90-307 (310)
91 3ogk_B Coronatine-insensitive 99.7 1.6E-16 5.5E-21 186.0 10.6 305 503-835 163-524 (592)
92 1p9a_G Platelet glycoprotein I 99.6 8.7E-16 3E-20 161.4 15.0 148 548-705 6-157 (290)
93 2ca6_A RAN GTPase-activating p 99.6 6E-17 2E-21 178.5 5.4 227 546-799 26-313 (386)
94 3m19_A Variable lymphocyte rec 99.6 1.5E-15 5.1E-20 156.3 15.3 122 505-630 15-141 (251)
95 1w5s_A Origin recognition comp 99.6 1E-14 3.5E-19 162.3 21.4 307 143-468 21-387 (412)
96 2qen_A Walker-type ATPase; unk 99.6 9E-15 3.1E-19 158.9 20.1 292 143-471 11-347 (350)
97 1m9s_A Internalin B; cell inva 99.6 1E-15 3.5E-20 176.7 12.4 78 549-630 40-119 (605)
98 2p1m_B Transport inhibitor res 99.6 3.3E-16 1.1E-20 183.5 7.5 84 728-825 430-518 (594)
99 3goz_A Leucine-rich repeat-con 99.6 5.1E-16 1.7E-20 169.3 8.1 118 510-630 4-148 (362)
100 1h6t_A Internalin B; cell adhe 99.6 3.2E-15 1.1E-19 157.3 13.8 78 674-765 136-213 (291)
101 3goz_A Leucine-rich repeat-con 99.6 5.8E-16 2E-20 168.8 7.7 257 530-803 2-297 (362)
102 2fna_A Conserved hypothetical 99.6 2.5E-14 8.7E-19 155.7 19.3 289 143-470 12-354 (357)
103 4glp_A Monocyte differentiatio 99.6 7.3E-16 2.5E-20 164.1 6.2 218 505-744 65-308 (310)
104 3m19_A Variable lymphocyte rec 99.6 9.4E-15 3.2E-19 150.3 13.3 173 552-765 14-192 (251)
105 2p1m_B Transport inhibitor res 99.6 9.5E-16 3.3E-20 179.5 5.7 35 618-653 287-322 (594)
106 1h6t_A Internalin B; cell adhe 99.6 5.7E-15 2E-19 155.3 11.1 167 500-706 42-210 (291)
107 4ezg_A Putative uncharacterize 99.5 1.6E-14 5.6E-19 142.4 10.8 153 569-764 41-193 (197)
108 1m9s_A Internalin B; cell inva 99.5 1E-14 3.6E-19 168.2 10.9 143 500-653 39-183 (605)
109 2o6s_A Variable lymphocyte rec 99.5 1.2E-14 4E-19 145.0 8.8 137 489-629 14-157 (208)
110 3e6j_A Variable lymphocyte rec 99.5 6.6E-14 2.3E-18 141.5 14.2 141 486-630 23-169 (229)
111 3cvr_A Invasion plasmid antige 99.5 1.5E-13 5.1E-18 156.7 16.6 184 527-769 60-247 (571)
112 2v9t_B SLIT homolog 2 protein 99.5 7.6E-14 2.6E-18 140.1 11.0 101 526-629 32-137 (220)
113 2v70_A SLIT-2, SLIT homolog 2 99.5 1.4E-13 4.7E-18 138.2 12.7 140 487-630 16-163 (220)
114 2v9t_B SLIT homolog 2 protein 99.5 1.9E-13 6.5E-18 137.1 13.6 142 485-630 14-162 (220)
115 1dce_A Protein (RAB geranylger 99.5 1.6E-15 5.5E-20 174.0 -3.0 204 569-819 346-566 (567)
116 4ezg_A Putative uncharacterize 99.5 2.2E-13 7.6E-18 134.3 12.3 146 501-655 41-191 (197)
117 2xot_A Amphoterin-induced prot 99.5 1.3E-13 4.5E-18 149.9 11.6 118 508-629 22-145 (361)
118 2v70_A SLIT-2, SLIT homolog 2 99.5 1.7E-13 5.9E-18 137.5 11.4 143 507-653 14-161 (220)
119 2o6s_A Variable lymphocyte rec 99.5 4.7E-13 1.6E-17 133.2 14.0 176 507-697 10-190 (208)
120 2xot_A Amphoterin-induced prot 99.4 2.3E-13 7.9E-18 148.0 11.7 164 485-653 21-197 (361)
121 1xeu_A Internalin C; cellular 99.4 4.4E-13 1.5E-17 138.5 12.6 146 495-653 32-180 (263)
122 3cvr_A Invasion plasmid antige 99.4 2.9E-13 9.9E-18 154.3 11.8 108 505-630 60-170 (571)
123 2qby_B CDC6 homolog 3, cell di 99.4 1.9E-11 6.3E-16 134.4 25.0 300 144-468 20-355 (384)
124 1xeu_A Internalin C; cellular 99.4 2.8E-13 9.5E-18 140.0 8.9 96 525-630 18-116 (263)
125 3e6j_A Variable lymphocyte rec 99.4 7.4E-13 2.5E-17 133.8 11.3 141 506-652 21-166 (229)
126 2v1u_A Cell division control p 99.4 1E-11 3.6E-16 136.6 21.4 292 143-457 18-351 (387)
127 3qfl_A MLA10; coiled-coil, (CC 99.4 2.5E-13 8.7E-18 118.6 6.6 75 9-90 1-76 (115)
128 1fnn_A CDC6P, cell division co 99.4 4.4E-11 1.5E-15 131.6 22.8 294 144-457 17-351 (389)
129 2ell_A Acidic leucine-rich nuc 99.4 1.3E-12 4.5E-17 125.1 9.0 122 504-630 24-157 (168)
130 2je0_A Acidic leucine-rich nuc 99.3 1.1E-12 3.8E-17 122.8 7.9 120 504-628 17-148 (149)
131 1a9n_A U2A', U2A'; complex (nu 99.3 1.5E-12 5.1E-17 125.7 7.3 124 502-630 17-150 (176)
132 2qby_A CDC6 homolog 1, cell di 99.3 2.2E-11 7.4E-16 134.0 17.6 305 143-468 19-364 (386)
133 1w8a_A SLIT protein; signaling 99.3 4.6E-12 1.6E-16 124.1 10.8 122 507-631 11-137 (192)
134 4b8c_D Glucose-repressible alc 99.3 4.3E-13 1.5E-17 158.9 3.7 102 524-630 222-326 (727)
135 2wfh_A SLIT homolog 2 protein 99.3 8.3E-12 2.8E-16 122.2 12.3 119 507-630 13-136 (193)
136 2o6r_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 119.0 12.1 120 507-630 10-134 (177)
137 2ell_A Acidic leucine-rich nuc 99.3 8.6E-12 2.9E-16 119.3 10.1 128 523-655 21-157 (168)
138 3sb4_A Hypothetical leucine ri 99.3 2.2E-11 7.7E-16 130.5 14.5 274 502-808 23-315 (329)
139 4b8c_D Glucose-repressible alc 99.3 1.1E-12 3.6E-17 155.5 4.4 115 501-619 221-339 (727)
140 2je0_A Acidic leucine-rich nuc 99.3 6.2E-12 2.1E-16 117.6 7.3 124 524-652 15-147 (149)
141 1njg_A DNA polymerase III subu 99.2 1.5E-10 5.3E-15 118.2 15.3 197 144-352 23-231 (250)
142 3sb4_A Hypothetical leucine ri 99.2 9.8E-11 3.4E-15 125.4 12.6 260 503-796 48-328 (329)
143 2wfh_A SLIT homolog 2 protein 99.2 1.1E-10 3.6E-15 114.3 11.7 118 485-605 13-136 (193)
144 1w8a_A SLIT protein; signaling 99.2 1E-10 3.4E-15 114.5 11.2 121 485-609 11-139 (192)
145 1a9n_A U2A', U2A'; complex (nu 99.2 4E-11 1.4E-15 115.6 7.7 120 484-605 21-150 (176)
146 4fdw_A Leucine rich hypothetic 99.1 4.9E-10 1.7E-14 122.6 16.6 218 527-807 136-362 (401)
147 2chg_A Replication factor C sm 99.1 4.9E-10 1.7E-14 112.7 14.8 184 144-350 17-205 (226)
148 1dce_A Protein (RAB geranylger 99.1 1E-10 3.4E-15 134.2 10.7 97 528-630 443-543 (567)
149 2o6r_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 109.3 11.6 121 486-610 11-138 (177)
150 4fdw_A Leucine rich hypothetic 99.0 2.9E-09 1E-13 116.5 17.5 258 525-850 112-382 (401)
151 2r9u_A Variable lymphocyte rec 99.0 5.5E-10 1.9E-14 107.1 9.9 96 529-630 15-115 (174)
152 3g39_A Variable lymphocyte rec 99.0 5.4E-10 1.9E-14 106.7 9.8 97 528-630 11-112 (170)
153 2r9u_A Variable lymphocyte rec 99.0 6.7E-10 2.3E-14 106.5 10.5 103 507-613 15-122 (174)
154 1ds9_A Outer arm dynein; leuci 99.0 9.7E-12 3.3E-16 122.5 -2.6 102 547-653 43-148 (198)
155 1ds9_A Outer arm dynein; leuci 99.0 1.1E-11 3.7E-16 122.2 -2.3 130 515-651 36-180 (198)
156 3g39_A Variable lymphocyte rec 99.0 8.4E-10 2.9E-14 105.4 10.1 103 506-612 11-118 (170)
157 1sxj_B Activator 1 37 kDa subu 98.9 2.9E-09 9.7E-14 113.8 12.2 185 144-351 21-212 (323)
158 1hqc_A RUVB; extended AAA-ATPa 98.9 5.3E-08 1.8E-12 103.9 19.3 272 144-456 12-324 (324)
159 1iqp_A RFCS; clamp loader, ext 98.8 1.4E-08 4.8E-13 108.5 11.7 186 144-352 25-215 (327)
160 3te6_A Regulatory protein SIR3 98.7 1.9E-07 6.7E-12 97.0 14.2 169 145-317 21-212 (318)
161 2ifg_A High affinity nerve gro 98.7 4.1E-08 1.4E-12 105.9 9.4 93 532-630 14-113 (347)
162 2ifg_A High affinity nerve gro 98.7 4.5E-08 1.5E-12 105.6 9.4 100 508-610 12-117 (347)
163 4fs7_A Uncharacterized protein 98.6 4.8E-07 1.6E-11 99.2 17.7 202 590-820 157-373 (394)
164 2chq_A Replication factor C sm 98.6 2.1E-07 7.2E-12 98.9 12.8 180 144-349 17-204 (319)
165 1jr3_A DNA polymerase III subu 98.6 3.6E-07 1.2E-11 99.5 14.7 193 144-349 16-221 (373)
166 3un9_A NLR family member X1; l 98.6 1.1E-08 3.9E-13 110.7 2.3 124 505-630 73-221 (372)
167 3un9_A NLR family member X1; l 98.6 1.5E-08 5.2E-13 109.6 2.9 155 525-711 71-253 (372)
168 1jbk_A CLPB protein; beta barr 98.5 7.1E-08 2.4E-12 94.1 6.4 46 144-189 22-67 (195)
169 3bos_A Putative DNA replicatio 98.4 3.7E-07 1.3E-11 92.5 9.0 173 144-349 28-217 (242)
170 2ra8_A Uncharacterized protein 98.4 2.1E-07 7.3E-12 99.7 7.0 92 548-654 135-228 (362)
171 2z4s_A Chromosomal replication 98.4 1.7E-06 5.7E-11 95.7 13.9 181 145-346 106-303 (440)
172 3h4m_A Proteasome-activating n 98.4 1.4E-06 4.7E-11 90.8 12.3 176 144-347 17-229 (285)
173 1sxj_A Activator 1 95 kDa subu 98.4 2E-06 7E-11 97.3 14.4 189 144-351 39-255 (516)
174 4fs7_A Uncharacterized protein 98.4 7.3E-06 2.5E-10 89.7 17.5 278 523-845 68-373 (394)
175 4gt6_A Cell surface protein; l 98.3 7.7E-06 2.6E-10 89.6 16.3 275 523-834 84-388 (394)
176 3e4g_A ATP synthase subunit S, 98.3 4.4E-07 1.5E-11 85.1 5.3 89 673-766 62-153 (176)
177 1sxj_D Activator 1 41 kDa subu 98.3 2E-06 7E-11 92.7 11.1 193 144-348 37-234 (353)
178 3pvs_A Replication-associated 98.3 1.3E-05 4.5E-10 88.2 16.7 176 144-348 26-214 (447)
179 1d2n_A N-ethylmaleimide-sensit 98.3 3E-05 1E-09 80.0 18.4 197 144-371 33-264 (272)
180 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2.1E-05 7.2E-10 80.6 16.3 180 144-348 6-221 (262)
181 3syl_A Protein CBBX; photosynt 98.2 4.1E-06 1.4E-10 88.3 10.3 152 145-318 32-219 (309)
182 1sxj_E Activator 1 40 kDa subu 98.2 4.6E-06 1.6E-10 89.9 10.8 195 144-349 14-237 (354)
183 2ra8_A Uncharacterized protein 98.2 1E-06 3.5E-11 94.4 4.9 83 673-763 253-341 (362)
184 3pfi_A Holliday junction ATP-d 98.1 3.2E-05 1.1E-09 82.7 16.3 171 144-348 29-226 (338)
185 3uk6_A RUVB-like 2; hexameric 98.1 1.4E-05 4.6E-10 86.7 12.9 195 144-347 44-301 (368)
186 3d8b_A Fidgetin-like protein 1 98.1 3.4E-05 1.2E-09 82.8 15.6 180 144-350 84-296 (357)
187 3e4g_A ATP synthase subunit S, 98.1 1.9E-06 6.6E-11 80.7 5.0 48 595-643 61-108 (176)
188 4h09_A Hypothetical leucine ri 98.1 8.9E-05 3E-09 80.6 19.0 119 503-629 45-167 (379)
189 1l8q_A Chromosomal replication 98.1 1.9E-05 6.6E-10 83.7 13.4 165 153-343 23-202 (324)
190 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00012 4.1E-09 77.1 19.4 181 144-350 12-224 (322)
191 3u61_B DNA polymerase accessor 98.1 1.5E-05 5.1E-10 84.6 12.2 180 144-351 26-219 (324)
192 3b9p_A CG5977-PA, isoform A; A 98.1 6.9E-05 2.4E-09 78.4 16.8 179 144-349 21-233 (297)
193 1sxj_C Activator 1 40 kDa subu 98.1 2.3E-05 8E-10 83.7 12.8 178 145-345 26-208 (340)
194 4gt6_A Cell surface protein; l 98.1 4.7E-05 1.6E-09 83.2 15.6 282 500-821 83-386 (394)
195 3eie_A Vacuolar protein sortin 98.0 6E-05 2.1E-09 79.7 15.4 178 144-349 18-228 (322)
196 1a5t_A Delta prime, HOLB; zinc 98.0 5.3E-05 1.8E-09 80.5 14.8 171 149-348 7-204 (334)
197 3vfd_A Spastin; ATPase, microt 98.0 0.00011 3.8E-09 79.9 16.5 179 144-349 115-326 (389)
198 2qp9_X Vacuolar protein sortin 97.9 5.2E-05 1.8E-09 81.2 13.0 178 144-349 51-261 (355)
199 2p65_A Hypothetical protein PF 97.9 1.4E-05 4.7E-10 77.1 7.7 46 144-189 22-67 (187)
200 3cf0_A Transitional endoplasmi 97.9 0.00011 3.8E-09 76.7 15.1 174 144-344 15-223 (301)
201 4b4t_J 26S protease regulatory 97.9 0.0004 1.4E-08 73.9 18.6 171 144-342 148-354 (405)
202 2zan_A Vacuolar protein sortin 97.9 0.00029 9.9E-09 77.8 17.4 180 144-349 134-345 (444)
203 4h09_A Hypothetical leucine ri 97.8 0.00046 1.6E-08 74.8 17.8 120 523-652 43-165 (379)
204 4b4t_L 26S protease subunit RP 97.8 0.00037 1.3E-08 75.5 16.4 171 144-342 181-387 (437)
205 2gno_A DNA polymerase III, gam 97.8 0.0001 3.4E-09 76.7 11.6 147 148-316 1-152 (305)
206 3ec2_A DNA replication protein 97.8 1.1E-05 3.7E-10 77.4 3.6 118 149-286 19-143 (180)
207 3pxg_A Negative regulator of g 97.7 0.00016 5.5E-09 80.5 12.5 150 144-318 180-340 (468)
208 4b4t_K 26S protease regulatory 97.7 0.00055 1.9E-08 74.1 16.0 170 144-341 172-378 (428)
209 1io0_A Tropomodulin; LRR prote 97.7 8.4E-06 2.9E-10 78.5 1.5 107 523-630 33-161 (185)
210 3rw6_A Nuclear RNA export fact 97.7 9.6E-06 3.3E-10 82.2 2.0 56 549-605 167-230 (267)
211 4b4t_I 26S protease regulatory 97.7 0.00068 2.3E-08 72.4 15.9 169 145-341 183-387 (437)
212 4b4t_H 26S protease regulatory 97.7 0.00067 2.3E-08 73.2 16.1 169 145-341 210-414 (467)
213 4b4t_M 26S protease regulatory 97.7 0.00031 1.1E-08 76.1 13.6 170 144-341 181-386 (434)
214 3n70_A Transport activator; si 97.7 5.6E-05 1.9E-09 69.4 6.7 45 145-189 2-48 (145)
215 1qvr_A CLPB protein; coiled co 97.7 0.00013 4.6E-09 87.8 11.4 154 144-316 170-345 (854)
216 3hu3_A Transitional endoplasmi 97.6 0.0004 1.4E-08 77.2 14.2 177 145-348 205-414 (489)
217 1io0_A Tropomodulin; LRR prote 97.6 4.9E-05 1.7E-09 73.1 6.0 107 545-653 29-159 (185)
218 3rw6_A Nuclear RNA export fact 97.6 4.4E-05 1.5E-09 77.3 5.7 79 524-602 168-258 (267)
219 1in4_A RUVB, holliday junction 97.6 0.00098 3.4E-08 70.6 16.0 171 144-348 25-222 (334)
220 2w58_A DNAI, primosome compone 97.6 7.4E-05 2.5E-09 73.1 6.7 113 152-285 37-158 (202)
221 1lv7_A FTSH; alpha/beta domain 97.6 0.0011 3.9E-08 67.3 15.7 176 144-346 12-222 (257)
222 2r62_A Cell division protease 97.5 8.5E-05 2.9E-09 76.3 6.6 172 144-342 11-218 (268)
223 3pxi_A Negative regulator of g 97.5 0.00034 1.2E-08 83.3 12.7 152 144-318 180-340 (758)
224 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00049 1.7E-08 82.0 14.0 154 144-316 186-362 (758)
225 2ce7_A Cell division protein F 97.5 0.00063 2.1E-08 75.0 13.3 172 144-342 16-221 (476)
226 3co5_A Putative two-component 97.4 5.6E-05 1.9E-09 69.2 2.9 45 145-189 5-51 (143)
227 1ofh_A ATP-dependent HSL prote 97.4 0.00063 2.1E-08 71.4 11.5 46 144-189 15-74 (310)
228 2kjq_A DNAA-related protein; s 97.3 5.3E-05 1.8E-09 69.7 1.1 55 145-205 19-73 (149)
229 4fcw_A Chaperone protein CLPB; 97.2 0.00087 3E-08 70.4 9.3 45 145-189 18-71 (311)
230 2c9o_A RUVB-like 1; hexameric 97.1 0.0026 8.9E-08 70.5 12.9 46 144-189 37-87 (456)
231 3cf2_A TER ATPase, transitiona 97.0 0.003 1E-07 73.8 12.6 171 145-342 205-407 (806)
232 1ojl_A Transcriptional regulat 97.0 0.00078 2.7E-08 70.2 6.9 46 144-189 2-49 (304)
233 3t15_A Ribulose bisphosphate c 97.0 0.005 1.7E-07 63.7 12.7 25 165-189 36-60 (293)
234 1iy2_A ATP-dependent metallopr 96.9 0.008 2.7E-07 61.7 13.4 171 144-342 40-245 (278)
235 1ypw_A Transitional endoplasmi 96.9 0.0028 9.5E-08 75.3 10.6 172 144-342 204-407 (806)
236 2x8a_A Nuclear valosin-contain 96.9 0.015 5.3E-07 59.3 14.9 149 144-317 10-192 (274)
237 2dhr_A FTSH; AAA+ protein, hex 96.8 0.0095 3.3E-07 66.0 13.9 168 144-342 31-236 (499)
238 1ixz_A ATP-dependent metallopr 96.8 0.0075 2.5E-07 61.0 12.3 171 144-342 16-221 (254)
239 3m6a_A ATP-dependent protease 96.8 0.0076 2.6E-07 68.1 12.7 45 145-189 82-132 (543)
240 3pxi_A Negative regulator of g 96.7 0.0023 7.8E-08 76.1 8.2 46 144-189 491-545 (758)
241 3hr8_A Protein RECA; alpha and 96.6 0.0062 2.1E-07 64.2 9.9 87 164-258 60-150 (356)
242 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0011 3.9E-08 67.9 4.0 69 165-258 123-193 (331)
243 1n0w_A DNA repair protein RAD5 96.6 0.0071 2.4E-07 60.6 9.6 92 164-257 23-129 (243)
244 2cvh_A DNA repair and recombin 96.5 0.0064 2.2E-07 59.9 8.5 87 164-257 19-115 (220)
245 2z43_A DNA repair and recombin 96.3 0.013 4.4E-07 61.6 10.2 91 164-256 106-212 (324)
246 1v5w_A DMC1, meiotic recombina 96.3 0.017 5.9E-07 61.1 11.0 91 164-256 121-228 (343)
247 3io5_A Recombination and repai 96.2 0.016 5.5E-07 59.2 9.6 87 166-258 29-122 (333)
248 1xp8_A RECA protein, recombina 96.1 0.016 5.4E-07 61.6 9.7 86 164-257 73-162 (366)
249 2zr9_A Protein RECA, recombina 96.1 0.016 5.6E-07 61.2 9.6 87 164-258 60-150 (349)
250 2qgz_A Helicase loader, putati 96.0 0.0061 2.1E-07 63.5 5.7 41 149-189 133-176 (308)
251 2b8t_A Thymidine kinase; deoxy 96.0 0.0029 9.9E-08 62.0 3.0 114 164-287 11-127 (223)
252 1g5t_A COB(I)alamin adenosyltr 96.0 0.0044 1.5E-07 58.8 4.0 117 165-286 28-163 (196)
253 1jr3_D DNA polymerase III, del 96.0 0.026 8.8E-07 59.9 10.5 164 156-347 9-183 (343)
254 1rz3_A Hypothetical protein rb 95.9 0.0082 2.8E-07 58.2 5.8 42 148-189 2-46 (201)
255 1u94_A RECA protein, recombina 95.9 0.021 7.1E-07 60.5 9.2 86 164-257 62-151 (356)
256 2i1q_A DNA repair and recombin 95.9 0.02 6.7E-07 60.2 9.0 91 164-256 97-213 (322)
257 3ice_A Transcription terminati 95.8 0.0062 2.1E-07 63.8 4.5 53 155-208 163-216 (422)
258 3dm5_A SRP54, signal recogniti 95.8 0.044 1.5E-06 59.3 11.2 26 164-189 99-124 (443)
259 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.028 9.4E-07 55.8 9.1 87 165-257 23-133 (235)
260 1r6b_X CLPA protein; AAA+, N-t 95.7 0.012 4.1E-07 70.0 7.2 46 144-189 458-512 (758)
261 4a74_A DNA repair and recombin 95.6 0.047 1.6E-06 53.9 10.3 59 164-223 24-85 (231)
262 1qvr_A CLPB protein; coiled co 95.6 0.012 4.2E-07 70.7 6.9 45 145-189 559-612 (854)
263 2bjv_A PSP operon transcriptio 95.6 0.0084 2.9E-07 61.0 4.7 46 144-189 6-53 (265)
264 3lda_A DNA repair protein RAD5 95.6 0.054 1.8E-06 58.2 11.0 93 164-257 177-283 (400)
265 3c8u_A Fructokinase; YP_612366 95.5 0.0098 3.3E-07 58.0 4.7 39 151-189 6-46 (208)
266 1pzn_A RAD51, DNA repair and r 95.4 0.034 1.2E-06 58.8 8.8 93 164-258 130-242 (349)
267 2px0_A Flagellar biosynthesis 95.4 0.044 1.5E-06 56.4 9.1 87 164-256 104-191 (296)
268 3rfe_A Platelet glycoprotein I 95.3 0.016 5.6E-07 51.4 5.0 53 575-630 11-65 (130)
269 2ck3_D ATP synthase subunit be 95.2 0.16 5.6E-06 54.9 13.0 101 155-257 142-263 (482)
270 3kb2_A SPBC2 prophage-derived 95.1 0.011 3.7E-07 55.6 3.3 24 166-189 2-25 (173)
271 1qhx_A CPT, protein (chloramph 95.1 0.011 3.8E-07 55.9 3.3 24 166-189 4-27 (178)
272 3bh0_A DNAB-like replicative h 95.1 0.084 2.9E-06 55.0 10.2 52 164-220 67-118 (315)
273 1zp6_A Hypothetical protein AT 95.0 0.014 4.8E-07 55.9 3.9 26 164-189 8-33 (191)
274 3lw7_A Adenylate kinase relate 95.0 0.012 4E-07 55.5 3.1 22 166-188 2-23 (179)
275 2r44_A Uncharacterized protein 94.9 0.014 4.9E-07 61.5 4.1 44 144-189 27-70 (331)
276 3e70_C DPA, signal recognition 94.9 0.12 4E-06 53.9 10.8 58 163-223 127-185 (328)
277 2hf9_A Probable hydrogenase ni 94.9 0.027 9.2E-07 55.6 5.7 40 150-189 23-62 (226)
278 1vma_A Cell division protein F 94.8 0.084 2.9E-06 54.5 9.4 90 164-257 103-196 (306)
279 3kl4_A SRP54, signal recogniti 94.8 0.13 4.3E-06 55.7 11.1 26 164-189 96-121 (433)
280 1ly1_A Polynucleotide kinase; 94.8 0.016 5.3E-07 54.9 3.6 22 166-187 3-24 (181)
281 2ga8_A Hypothetical 39.9 kDa p 94.8 0.029 1E-06 58.5 5.8 43 147-189 2-48 (359)
282 3uie_A Adenylyl-sulfate kinase 94.8 0.019 6.3E-07 55.6 4.2 28 162-189 22-49 (200)
283 3vaa_A Shikimate kinase, SK; s 94.8 0.014 4.9E-07 56.4 3.3 26 164-189 24-49 (199)
284 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.023 7.8E-07 63.0 5.3 43 145-189 23-65 (500)
285 1kgd_A CASK, peripheral plasma 94.8 0.015 5E-07 55.2 3.3 24 166-189 6-29 (180)
286 1kag_A SKI, shikimate kinase I 94.7 0.014 4.7E-07 55.0 2.8 24 166-189 5-28 (173)
287 3trf_A Shikimate kinase, SK; a 94.7 0.017 5.7E-07 55.1 3.3 25 165-189 5-29 (185)
288 1odf_A YGR205W, hypothetical 3 94.7 0.031 1E-06 57.4 5.5 27 163-189 29-55 (290)
289 2dr3_A UPF0273 protein PH0284; 94.7 0.068 2.3E-06 53.4 8.1 40 164-206 22-61 (247)
290 2xxa_A Signal recognition part 94.6 0.21 7.2E-06 54.2 12.3 91 164-256 99-192 (433)
291 2ffh_A Protein (FFH); SRP54, s 94.6 0.11 3.7E-06 56.1 9.9 88 165-256 98-189 (425)
292 1sky_E F1-ATPase, F1-ATP synth 94.6 0.099 3.4E-06 56.7 9.5 100 156-257 141-255 (473)
293 3rfe_A Platelet glycoprotein I 94.6 0.041 1.4E-06 48.8 5.5 54 508-564 12-67 (130)
294 3jvv_A Twitching mobility prot 94.6 0.016 5.4E-07 61.4 3.2 114 163-289 121-234 (356)
295 2wsm_A Hydrogenase expression/ 94.6 0.027 9.2E-07 55.3 4.8 43 147-189 12-54 (221)
296 1nks_A Adenylate kinase; therm 94.6 0.021 7E-07 54.8 3.8 24 166-189 2-25 (194)
297 4eun_A Thermoresistant glucoki 94.5 0.02 6.8E-07 55.4 3.5 27 163-189 27-53 (200)
298 1knq_A Gluconate kinase; ALFA/ 94.5 0.022 7.6E-07 53.6 3.6 25 165-189 8-32 (175)
299 2rhm_A Putative kinase; P-loop 94.4 0.025 8.4E-07 54.2 4.0 25 165-189 5-29 (193)
300 3t61_A Gluconokinase; PSI-biol 94.4 0.018 6.1E-07 55.8 2.9 25 165-189 18-42 (202)
301 3hws_A ATP-dependent CLP prote 94.4 0.03 1E-06 59.9 4.9 45 145-189 16-75 (363)
302 3tr0_A Guanylate kinase, GMP k 94.4 0.021 7.2E-07 55.3 3.4 25 165-189 7-31 (205)
303 2ze6_A Isopentenyl transferase 94.4 0.023 7.8E-07 57.2 3.7 24 166-189 2-25 (253)
304 3umf_A Adenylate kinase; rossm 94.3 0.026 8.9E-07 55.0 3.9 26 164-189 28-53 (217)
305 2yvu_A Probable adenylyl-sulfa 94.3 0.024 8.2E-07 54.0 3.6 26 164-189 12-37 (186)
306 1um8_A ATP-dependent CLP prote 94.3 0.033 1.1E-06 59.9 5.1 45 145-189 22-96 (376)
307 2bdt_A BH3686; alpha-beta prot 94.3 0.025 8.5E-07 54.1 3.6 23 166-188 3-25 (189)
308 3iij_A Coilin-interacting nucl 94.3 0.02 7E-07 54.2 3.0 25 165-189 11-35 (180)
309 1kht_A Adenylate kinase; phosp 94.3 0.023 8E-07 54.3 3.5 24 166-189 4-27 (192)
310 1cr0_A DNA primase/helicase; R 94.3 0.18 6.1E-06 52.0 10.4 52 164-219 34-85 (296)
311 1ye8_A Protein THEP1, hypothet 94.3 0.024 8.2E-07 53.5 3.4 23 167-189 2-24 (178)
312 3tau_A Guanylate kinase, GMP k 94.3 0.025 8.5E-07 55.1 3.6 26 164-189 7-32 (208)
313 3asz_A Uridine kinase; cytidin 94.3 0.027 9.3E-07 54.9 3.9 26 164-189 5-30 (211)
314 4gp7_A Metallophosphoesterase; 94.2 0.022 7.5E-07 53.5 3.1 23 164-186 8-30 (171)
315 1g8p_A Magnesium-chelatase 38 94.2 0.018 6.1E-07 61.3 2.8 46 144-189 24-69 (350)
316 1zuh_A Shikimate kinase; alpha 94.2 0.025 8.5E-07 52.8 3.3 25 165-189 7-31 (168)
317 3cf2_A TER ATPase, transitiona 94.2 0.17 5.7E-06 59.2 10.7 170 144-341 477-682 (806)
318 3a00_A Guanylate kinase, GMP k 94.2 0.02 6.8E-07 54.6 2.6 24 166-189 2-25 (186)
319 1tev_A UMP-CMP kinase; ploop, 94.1 0.028 9.7E-07 53.9 3.7 25 165-189 3-27 (196)
320 2c95_A Adenylate kinase 1; tra 94.1 0.028 9.5E-07 54.0 3.6 26 164-189 8-33 (196)
321 1fx0_B ATP synthase beta chain 94.1 0.19 6.4E-06 54.6 10.3 100 156-257 155-276 (498)
322 2if2_A Dephospho-COA kinase; a 94.1 0.027 9.3E-07 54.6 3.5 22 166-187 2-23 (204)
323 2qor_A Guanylate kinase; phosp 94.1 0.022 7.7E-07 55.2 2.9 26 164-189 11-36 (204)
324 2jaq_A Deoxyguanosine kinase; 94.1 0.027 9.2E-07 54.5 3.5 23 167-189 2-24 (205)
325 1via_A Shikimate kinase; struc 94.1 0.023 7.9E-07 53.5 2.9 23 167-189 6-28 (175)
326 1y63_A LMAJ004144AAA protein; 94.1 0.028 9.6E-07 53.5 3.5 24 165-188 10-33 (184)
327 1cke_A CK, MSSA, protein (cyti 94.1 0.027 9.3E-07 55.6 3.5 24 166-189 6-29 (227)
328 1gvn_B Zeta; postsegregational 94.1 0.045 1.5E-06 56.2 5.2 26 164-189 32-57 (287)
329 3fwy_A Light-independent proto 94.1 0.029 9.8E-07 58.3 3.7 27 163-189 46-72 (314)
330 1uf9_A TT1252 protein; P-loop, 94.1 0.034 1.2E-06 53.7 4.1 26 163-188 6-31 (203)
331 2qt1_A Nicotinamide riboside k 94.0 0.033 1.1E-06 54.1 4.0 26 164-189 20-45 (207)
332 2j41_A Guanylate kinase; GMP, 94.0 0.028 9.6E-07 54.5 3.4 25 165-189 6-30 (207)
333 1ukz_A Uridylate kinase; trans 94.0 0.034 1.2E-06 53.8 3.9 26 164-189 14-39 (203)
334 3tqc_A Pantothenate kinase; bi 94.0 0.051 1.7E-06 56.4 5.4 43 147-189 70-116 (321)
335 2iyv_A Shikimate kinase, SK; t 94.0 0.022 7.6E-07 54.1 2.5 24 166-189 3-26 (184)
336 3cm0_A Adenylate kinase; ATP-b 94.0 0.032 1.1E-06 53.1 3.7 25 165-189 4-28 (186)
337 1ls1_A Signal recognition part 93.9 0.19 6.4E-06 51.7 9.6 89 165-256 98-189 (295)
338 1jjv_A Dephospho-COA kinase; P 93.9 0.032 1.1E-06 54.2 3.6 22 166-187 3-24 (206)
339 1j8m_F SRP54, signal recogniti 93.9 0.15 5.1E-06 52.4 8.7 89 165-256 98-189 (297)
340 1ex7_A Guanylate kinase; subst 93.9 0.026 8.7E-07 53.5 2.7 24 166-189 2-25 (186)
341 1lvg_A Guanylate kinase, GMP k 93.9 0.025 8.6E-07 54.5 2.7 24 166-189 5-28 (198)
342 3tlx_A Adenylate kinase 2; str 93.8 0.062 2.1E-06 53.6 5.7 27 163-189 27-53 (243)
343 2bwj_A Adenylate kinase 5; pho 93.8 0.034 1.2E-06 53.6 3.6 25 165-189 12-36 (199)
344 2yhs_A FTSY, cell division pro 93.8 0.21 7E-06 54.6 10.0 26 164-189 292-317 (503)
345 2plr_A DTMP kinase, probable t 93.8 0.037 1.3E-06 53.9 3.9 24 166-189 5-28 (213)
346 3ney_A 55 kDa erythrocyte memb 93.8 0.034 1.1E-06 53.1 3.4 26 164-189 18-43 (197)
347 1qf9_A UMP/CMP kinase, protein 93.8 0.038 1.3E-06 52.9 3.8 25 165-189 6-30 (194)
348 3a4m_A L-seryl-tRNA(SEC) kinas 93.7 0.038 1.3E-06 55.9 3.8 25 165-189 4-28 (260)
349 1e6c_A Shikimate kinase; phosp 93.7 0.028 9.7E-07 52.7 2.7 24 166-189 3-26 (173)
350 2grj_A Dephospho-COA kinase; T 93.7 0.039 1.3E-06 52.7 3.7 26 164-189 11-36 (192)
351 2cdn_A Adenylate kinase; phosp 93.7 0.036 1.2E-06 53.5 3.5 25 165-189 20-44 (201)
352 1htw_A HI0065; nucleotide-bind 93.7 0.041 1.4E-06 50.6 3.6 27 163-189 31-57 (158)
353 3l0o_A Transcription terminati 93.6 0.036 1.2E-06 58.0 3.5 53 154-207 163-216 (427)
354 2bbw_A Adenylate kinase 4, AK4 93.6 0.036 1.2E-06 55.6 3.5 26 164-189 26-51 (246)
355 3cmu_A Protein RECA, recombina 93.6 0.13 4.4E-06 65.7 9.1 86 164-257 1426-1515(2050)
356 3aez_A Pantothenate kinase; tr 93.6 0.041 1.4E-06 57.1 4.0 27 163-189 88-114 (312)
357 2j37_W Signal recognition part 93.6 0.42 1.4E-05 52.8 12.2 26 164-189 100-125 (504)
358 2pt5_A Shikimate kinase, SK; a 93.6 0.038 1.3E-06 51.5 3.4 23 167-189 2-24 (168)
359 1znw_A Guanylate kinase, GMP k 93.6 0.037 1.3E-06 53.7 3.4 26 164-189 19-44 (207)
360 2pbr_A DTMP kinase, thymidylat 93.6 0.039 1.3E-06 52.9 3.5 23 167-189 2-24 (195)
361 2jeo_A Uridine-cytidine kinase 93.6 0.044 1.5E-06 54.9 4.0 27 163-189 23-49 (245)
362 1g41_A Heat shock protein HSLU 93.6 0.047 1.6E-06 59.1 4.4 46 144-189 15-74 (444)
363 1uj2_A Uridine-cytidine kinase 93.5 0.043 1.5E-06 55.2 3.8 27 163-189 20-46 (252)
364 1tue_A Replication protein E1; 93.4 0.052 1.8E-06 51.7 3.9 37 153-189 45-82 (212)
365 1pgv_A TMD-1, tropomodulin TMD 93.4 0.098 3.3E-06 49.7 5.9 57 572-629 70-135 (197)
366 2p5t_B PEZT; postsegregational 93.4 0.052 1.8E-06 54.6 4.3 26 164-189 31-56 (253)
367 2wwf_A Thymidilate kinase, put 93.4 0.044 1.5E-06 53.3 3.6 25 165-189 10-34 (212)
368 2vli_A Antibiotic resistance p 93.4 0.029 9.9E-07 53.2 2.2 25 165-189 5-29 (183)
369 3fb4_A Adenylate kinase; psych 93.4 0.043 1.5E-06 53.7 3.5 23 167-189 2-24 (216)
370 1xjc_A MOBB protein homolog; s 93.4 0.044 1.5E-06 50.8 3.3 26 164-189 3-28 (169)
371 1z6g_A Guanylate kinase; struc 93.3 0.035 1.2E-06 54.4 2.7 26 164-189 22-47 (218)
372 2pt7_A CAG-ALFA; ATPase, prote 93.3 0.065 2.2E-06 56.1 4.9 105 166-287 172-276 (330)
373 1nn5_A Similar to deoxythymidy 93.3 0.048 1.6E-06 53.2 3.7 25 165-189 9-33 (215)
374 4e22_A Cytidylate kinase; P-lo 93.3 0.044 1.5E-06 55.1 3.4 26 164-189 26-51 (252)
375 4a1f_A DNAB helicase, replicat 93.2 0.23 7.8E-06 51.8 8.9 52 164-220 45-96 (338)
376 2z0h_A DTMP kinase, thymidylat 93.2 0.047 1.6E-06 52.4 3.5 23 167-189 2-24 (197)
377 3dl0_A Adenylate kinase; phosp 93.2 0.046 1.6E-06 53.5 3.4 23 167-189 2-24 (216)
378 1zd8_A GTP:AMP phosphotransfer 93.2 0.047 1.6E-06 53.9 3.5 25 165-189 7-31 (227)
379 3sr0_A Adenylate kinase; phosp 93.2 0.049 1.7E-06 52.7 3.5 23 167-189 2-24 (206)
380 1s96_A Guanylate kinase, GMP k 93.1 0.048 1.6E-06 53.4 3.3 26 164-189 15-40 (219)
381 1aky_A Adenylate kinase; ATP:A 93.1 0.05 1.7E-06 53.4 3.5 25 165-189 4-28 (220)
382 2v54_A DTMP kinase, thymidylat 93.0 0.054 1.8E-06 52.3 3.5 25 165-189 4-28 (204)
383 2pez_A Bifunctional 3'-phospho 93.0 0.058 2E-06 50.9 3.6 25 165-189 5-29 (179)
384 1rj9_A FTSY, signal recognitio 92.9 0.054 1.8E-06 56.0 3.5 26 164-189 101-126 (304)
385 1gtv_A TMK, thymidylate kinase 92.9 0.03 1E-06 54.7 1.5 23 167-189 2-24 (214)
386 1zak_A Adenylate kinase; ATP:A 92.9 0.051 1.8E-06 53.4 3.2 25 165-189 5-29 (222)
387 2i3b_A HCR-ntpase, human cance 92.9 0.047 1.6E-06 52.0 2.8 23 167-189 3-25 (189)
388 1sq5_A Pantothenate kinase; P- 92.8 0.11 3.8E-06 53.9 5.7 27 163-189 78-104 (308)
389 1m7g_A Adenylylsulfate kinase; 92.8 0.064 2.2E-06 52.2 3.7 27 163-189 23-49 (211)
390 1vht_A Dephospho-COA kinase; s 92.7 0.068 2.3E-06 52.3 3.8 23 165-187 4-26 (218)
391 3r20_A Cytidylate kinase; stru 92.7 0.063 2.2E-06 52.8 3.5 25 165-189 9-33 (233)
392 1pgv_A TMD-1, tropomodulin TMD 92.6 0.056 1.9E-06 51.4 2.9 106 524-630 39-167 (197)
393 3d3q_A TRNA delta(2)-isopenten 92.6 0.067 2.3E-06 55.6 3.7 24 166-189 8-31 (340)
394 2f1r_A Molybdopterin-guanine d 92.6 0.04 1.4E-06 51.5 1.8 24 166-189 3-26 (171)
395 3b85_A Phosphate starvation-in 92.6 0.086 2.9E-06 51.0 4.2 23 166-188 23-45 (208)
396 2f6r_A COA synthase, bifunctio 92.6 0.073 2.5E-06 54.4 3.9 23 164-186 74-96 (281)
397 3be4_A Adenylate kinase; malar 92.5 0.069 2.4E-06 52.2 3.6 24 166-189 6-29 (217)
398 3b9q_A Chloroplast SRP recepto 92.5 0.073 2.5E-06 54.9 3.8 26 164-189 99-124 (302)
399 1e4v_A Adenylate kinase; trans 92.5 0.071 2.4E-06 52.0 3.6 23 167-189 2-24 (214)
400 3nwj_A ATSK2; P loop, shikimat 92.5 0.054 1.8E-06 54.1 2.7 25 165-189 48-72 (250)
401 2ehv_A Hypothetical protein PH 92.4 0.065 2.2E-06 53.7 3.3 24 164-187 29-52 (251)
402 3ake_A Cytidylate kinase; CMP 92.4 0.069 2.4E-06 51.7 3.4 23 167-189 4-26 (208)
403 2pcj_A ABC transporter, lipopr 92.4 0.063 2.1E-06 52.8 3.1 26 164-189 29-54 (224)
404 3tif_A Uncharacterized ABC tra 92.4 0.062 2.1E-06 53.3 3.0 26 164-189 30-55 (235)
405 2xb4_A Adenylate kinase; ATP-b 92.4 0.072 2.5E-06 52.4 3.5 23 167-189 2-24 (223)
406 3p32_A Probable GTPase RV1496/ 92.3 0.14 4.8E-06 54.4 5.9 37 153-189 65-103 (355)
407 2onk_A Molybdate/tungstate ABC 92.3 0.071 2.4E-06 52.9 3.3 26 163-189 23-48 (240)
408 3lnc_A Guanylate kinase, GMP k 92.3 0.048 1.7E-06 54.0 2.1 25 165-189 27-52 (231)
409 2r9v_A ATP synthase subunit al 92.3 0.22 7.4E-06 54.3 7.2 97 156-257 165-277 (515)
410 3exa_A TRNA delta(2)-isopenten 92.2 0.087 3E-06 53.8 3.9 25 165-189 3-27 (322)
411 3k1j_A LON protease, ATP-depen 92.2 0.094 3.2E-06 60.2 4.7 43 145-189 42-84 (604)
412 3crm_A TRNA delta(2)-isopenten 92.2 0.08 2.7E-06 54.7 3.6 24 166-189 6-29 (323)
413 1np6_A Molybdopterin-guanine d 92.2 0.079 2.7E-06 49.6 3.3 25 165-189 6-30 (174)
414 3a8t_A Adenylate isopentenyltr 92.1 0.087 3E-06 54.6 3.8 26 164-189 39-64 (339)
415 3end_A Light-independent proto 92.0 0.087 3E-06 54.8 3.7 41 163-206 39-79 (307)
416 2cbz_A Multidrug resistance-as 92.0 0.074 2.5E-06 52.8 3.0 26 164-189 30-55 (237)
417 1ak2_A Adenylate kinase isoenz 92.0 0.085 2.9E-06 52.3 3.5 25 165-189 16-40 (233)
418 1q57_A DNA primase/helicase; d 91.9 0.49 1.7E-05 52.9 10.1 53 164-220 241-293 (503)
419 3gfo_A Cobalt import ATP-bindi 91.9 0.074 2.5E-06 54.0 3.0 26 164-189 33-58 (275)
420 1b0u_A Histidine permease; ABC 91.8 0.077 2.6E-06 53.5 3.0 26 164-189 31-56 (262)
421 4eaq_A DTMP kinase, thymidylat 91.8 0.18 6.1E-06 49.7 5.6 26 164-189 25-50 (229)
422 1oix_A RAS-related protein RAB 91.7 0.098 3.4E-06 49.9 3.5 25 165-189 29-53 (191)
423 1sgw_A Putative ABC transporte 91.7 0.07 2.4E-06 51.9 2.4 26 164-189 34-59 (214)
424 3gqb_B V-type ATP synthase bet 91.7 0.18 6.1E-06 54.2 5.7 93 164-257 146-261 (464)
425 2d2e_A SUFC protein; ABC-ATPas 91.7 0.091 3.1E-06 52.6 3.3 25 164-188 28-52 (250)
426 1ji0_A ABC transporter; ATP bi 91.7 0.083 2.8E-06 52.5 3.0 26 164-189 31-56 (240)
427 3vr4_D V-type sodium ATPase su 91.7 0.4 1.4E-05 51.5 8.4 93 164-257 150-258 (465)
428 2og2_A Putative signal recogni 91.7 0.1 3.5E-06 55.0 3.8 26 164-189 156-181 (359)
429 1g6h_A High-affinity branched- 91.7 0.084 2.9E-06 53.1 3.0 26 164-189 32-57 (257)
430 4g1u_C Hemin import ATP-bindin 91.6 0.083 2.8E-06 53.4 3.0 26 164-189 36-61 (266)
431 2olj_A Amino acid ABC transpor 91.6 0.084 2.9E-06 53.2 3.0 26 164-189 49-74 (263)
432 2pze_A Cystic fibrosis transme 91.6 0.087 3E-06 52.0 3.0 26 164-189 33-58 (229)
433 2eyu_A Twitching motility prot 91.6 0.11 3.6E-06 52.4 3.7 110 163-288 23-135 (261)
434 1mv5_A LMRA, multidrug resista 91.6 0.093 3.2E-06 52.3 3.2 26 164-189 27-52 (243)
435 3foz_A TRNA delta(2)-isopenten 91.5 0.11 3.7E-06 53.1 3.6 26 164-189 9-34 (316)
436 2zu0_C Probable ATP-dependent 91.5 0.097 3.3E-06 53.0 3.3 25 164-188 45-69 (267)
437 2ff7_A Alpha-hemolysin translo 91.5 0.09 3.1E-06 52.5 3.0 26 164-189 34-59 (247)
438 1vpl_A ABC transporter, ATP-bi 91.5 0.089 3.1E-06 52.8 3.0 26 164-189 40-65 (256)
439 2q6t_A DNAB replication FORK h 91.4 0.49 1.7E-05 51.9 9.2 53 164-220 199-251 (444)
440 2qe7_A ATP synthase subunit al 91.4 0.64 2.2E-05 50.6 9.7 97 156-257 152-264 (502)
441 3cmu_A Protein RECA, recombina 91.4 0.38 1.3E-05 61.6 9.1 87 164-258 382-472 (2050)
442 1ltq_A Polynucleotide kinase; 91.3 0.11 3.7E-06 53.8 3.6 23 166-188 3-25 (301)
443 2v9p_A Replication protein E1; 91.3 0.11 3.6E-06 53.5 3.4 27 163-189 124-150 (305)
444 2ixe_A Antigen peptide transpo 91.2 0.097 3.3E-06 53.1 3.0 26 164-189 44-69 (271)
445 2ghi_A Transport protein; mult 91.2 0.098 3.4E-06 52.7 3.0 26 164-189 45-70 (260)
446 2qi9_C Vitamin B12 import ATP- 91.2 0.098 3.4E-06 52.2 3.0 26 164-189 25-50 (249)
447 3cmw_A Protein RECA, recombina 91.1 0.36 1.2E-05 60.9 8.4 83 166-256 384-470 (1706)
448 2nq2_C Hypothetical ABC transp 91.1 0.1 3.5E-06 52.3 2.9 26 164-189 30-55 (253)
449 2wji_A Ferrous iron transport 91.1 0.13 4.5E-06 47.5 3.6 23 166-188 4-26 (165)
450 2yz2_A Putative ABC transporte 91.1 0.1 3.5E-06 52.7 3.0 26 164-189 32-57 (266)
451 2qmh_A HPR kinase/phosphorylas 91.1 0.12 4E-06 48.9 3.1 25 165-189 34-58 (205)
452 2f9l_A RAB11B, member RAS onco 91.0 0.11 3.8E-06 49.9 3.1 25 165-189 5-29 (199)
453 2ihy_A ABC transporter, ATP-bi 91.0 0.1 3.6E-06 53.0 3.0 26 164-189 46-71 (279)
454 1yrb_A ATP(GTP)binding protein 91.0 0.13 4.4E-06 51.9 3.7 26 164-189 13-38 (262)
455 1a7j_A Phosphoribulokinase; tr 91.0 0.061 2.1E-06 55.2 1.2 26 164-189 4-29 (290)
456 2c61_A A-type ATP synthase non 91.0 0.21 7.3E-06 54.0 5.5 100 157-257 143-259 (469)
457 1tq4_A IIGP1, interferon-induc 91.0 0.18 6E-06 54.3 4.8 25 164-188 68-92 (413)
458 2r6a_A DNAB helicase, replicat 91.0 0.46 1.6E-05 52.2 8.4 51 164-218 202-252 (454)
459 1zu4_A FTSY; GTPase, signal re 90.9 0.14 4.7E-06 53.3 3.9 26 164-189 104-129 (320)
460 2dyk_A GTP-binding protein; GT 90.9 0.14 4.8E-06 46.9 3.6 24 166-189 2-25 (161)
461 3hjn_A DTMP kinase, thymidylat 90.9 0.39 1.3E-05 45.9 6.7 23 167-189 2-24 (197)
462 3lv8_A DTMP kinase, thymidylat 90.8 0.26 8.8E-06 48.6 5.5 37 165-203 27-63 (236)
463 3oaa_A ATP synthase subunit al 90.8 1.1 3.6E-05 48.8 10.6 97 156-257 152-264 (513)
464 3sop_A Neuronal-specific septi 90.8 0.13 4.4E-06 52.1 3.5 23 167-189 4-26 (270)
465 2zej_A Dardarin, leucine-rich 90.8 0.1 3.5E-06 49.4 2.6 22 167-188 4-25 (184)
466 3zvl_A Bifunctional polynucleo 90.8 0.12 4.2E-06 56.1 3.4 27 163-189 256-282 (416)
467 1fx0_A ATP synthase alpha chai 90.8 0.21 7.2E-06 54.4 5.2 89 164-257 162-265 (507)
468 2vp4_A Deoxynucleoside kinase; 90.7 0.11 3.9E-06 51.2 2.8 25 164-188 19-43 (230)
469 2ck3_A ATP synthase subunit al 90.7 0.4 1.4E-05 52.3 7.2 101 156-257 152-272 (510)
470 1svm_A Large T antigen; AAA+ f 90.6 0.14 4.7E-06 54.5 3.6 27 163-189 167-193 (377)
471 1p9r_A General secretion pathw 90.6 0.25 8.5E-06 53.4 5.6 29 161-189 163-191 (418)
472 2ce2_X GTPase HRAS; signaling 90.5 0.14 4.9E-06 46.9 3.2 23 167-189 5-27 (166)
473 1q3t_A Cytidylate kinase; nucl 90.5 0.15 5.3E-06 50.5 3.6 26 164-189 15-40 (236)
474 1nlf_A Regulatory protein REPA 90.4 0.14 4.9E-06 52.2 3.4 26 164-189 29-54 (279)
475 1g8f_A Sulfate adenylyltransfe 90.4 0.21 7.2E-06 55.2 5.0 43 147-189 375-419 (511)
476 2ocp_A DGK, deoxyguanosine kin 90.4 0.17 5.9E-06 50.3 3.9 25 165-189 2-26 (241)
477 3eph_A TRNA isopentenyltransfe 90.3 0.16 5.5E-06 53.9 3.7 24 166-189 3-26 (409)
478 2pjz_A Hypothetical protein ST 90.3 0.13 4.6E-06 51.7 3.0 24 165-188 30-53 (263)
479 4edh_A DTMP kinase, thymidylat 90.2 0.42 1.4E-05 46.3 6.4 32 165-198 6-37 (213)
480 3f9v_A Minichromosome maintena 90.2 0.089 3.1E-06 60.0 1.8 46 144-189 295-351 (595)
481 1zj6_A ADP-ribosylation factor 90.2 0.3 1E-05 46.2 5.3 34 154-188 6-39 (187)
482 3llm_A ATP-dependent RNA helic 90.2 1.2 4.2E-05 43.7 10.0 103 153-258 66-187 (235)
483 2wjg_A FEOB, ferrous iron tran 90.2 0.18 6.3E-06 47.6 3.8 23 166-188 8-30 (188)
484 4tmk_A Protein (thymidylate ki 90.2 0.34 1.2E-05 46.9 5.7 52 166-219 4-55 (213)
485 3bgw_A DNAB-like replicative h 90.2 0.64 2.2E-05 50.7 8.5 51 164-219 196-246 (444)
486 3fvq_A Fe(3+) IONS import ATP- 90.2 0.15 5.3E-06 53.5 3.4 26 164-189 29-54 (359)
487 3mfy_A V-type ATP synthase alp 90.2 0.58 2E-05 51.3 7.9 58 155-217 216-275 (588)
488 1z2a_A RAS-related protein RAB 90.1 0.16 5.4E-06 46.9 3.1 24 166-189 6-29 (168)
489 3gmt_A Adenylate kinase; ssgci 90.0 0.16 5.5E-06 49.6 3.2 24 166-189 9-32 (230)
490 2bbs_A Cystic fibrosis transme 90.0 0.15 5.2E-06 52.1 3.1 26 164-189 63-88 (290)
491 3vr4_A V-type sodium ATPase ca 90.0 0.99 3.4E-05 49.8 9.6 58 155-217 221-280 (600)
492 2r8r_A Sensor protein; KDPD, P 89.9 0.2 6.8E-06 48.6 3.7 23 167-189 8-30 (228)
493 3kta_A Chromosome segregation 89.9 0.18 6.1E-06 47.5 3.4 24 166-189 27-50 (182)
494 4gzl_A RAS-related C3 botulinu 89.9 0.2 6.7E-06 48.3 3.7 37 153-189 18-54 (204)
495 3nh6_A ATP-binding cassette SU 89.8 0.11 3.9E-06 53.4 2.1 26 164-189 79-104 (306)
496 2gj8_A MNME, tRNA modification 89.7 0.18 6E-06 47.1 3.2 24 166-189 5-28 (172)
497 3con_A GTPase NRAS; structural 89.7 0.17 5.9E-06 47.9 3.2 24 166-189 22-45 (190)
498 3tui_C Methionine import ATP-b 89.7 0.17 5.9E-06 53.2 3.3 26 164-189 53-78 (366)
499 3upu_A ATP-dependent DNA helic 89.6 0.35 1.2E-05 53.4 5.9 38 151-189 32-69 (459)
500 2orw_A Thymidine kinase; TMTK, 89.6 0.2 6.9E-06 47.4 3.5 24 166-189 4-27 (184)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=8e-49 Score=451.42 Aligned_cols=309 Identities=15% Similarity=0.172 Sum_probs=253.1
Q ss_pred cchhHHHHHHHHHHhcC---CcEEEEEEeCCCCcHHHHHHHHHh--hhccCCCCCceEEEEEeCCcc--cHHHHHHHHHH
Q 002863 147 VGLQLTFDRVWRCLMEE---HVGIVGLYGMGGVGKTTLLTQINN--RFFDTPNHFDFVIWVVVSRDL--QLEKIQEIIAK 219 (873)
Q Consensus 147 vgr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~ 219 (873)
|||++++++|.++|..+ +.++|+|+||||+||||||+++|+ +. +++.+|+.++||++++.+ ++..+++.|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999754 689999999999999999999998 44 678999999999999985 89999999999
Q ss_pred HhCCCCc-----cccccCHHHHHHHHHHHhccC-CeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhhhccc
Q 002863 220 KIGLFNE-----SWKNKSMQEKAQQIFNILSKK-KFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVCGQME 293 (873)
Q Consensus 220 ~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~ 293 (873)
+++.... .....+.+.+...+++.|+++ ||||||||||+...+ .+ +. ..||+||||||++.|+..++
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~~--~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----AQ--ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----HH--HTTCEEEEEESBGGGGGGCC
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----cc--cCCCEEEEEcCCHHHHHHcC
Confidence 9986521 112335667789999999996 999999999997654 11 11 36899999999999998875
Q ss_pred -cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHHHHHchh
Q 002863 294 -AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAMASRKTPREWEHAIEVLRSSA 372 (873)
Q Consensus 294 -~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 372 (873)
....|+|++|+++|||+||.++++... .++++++++++|+++|+|+||||+++|+.|+.+ .|+.. +.+.+..
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l~~~l 355 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQLNNKL 355 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HHhHHHh
Confidence 446799999999999999999987653 246788899999999999999999999998764 35544 4555544
Q ss_pred cccCCchhHHHHHhhhccccCCcchhHHHHh-----------hhccCCCCccccHHHHHHHHHHc--CCccCCC-hhhHH
Q 002863 373 SKFAGMEKRVFSRLKFSFDFLPSDATRFCLL-----------YCTLFPEDYRISIEDLIDCWICE--GFLDDHD-GIEAR 438 (873)
Q Consensus 373 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-----------~~~~fp~~~~i~~~~Li~~W~ae--g~i~~~~-~~~~~ 438 (873)
+... ..++..++.+||++||. ++|.||+ |||+||+++.|+ +++|+|+ ||+...+ +...+
T Consensus 356 ~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 356 ESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 4322 24688999999999999 8999999 999999999999 8999999 9998765 45566
Q ss_pred HHHHHHHHHHHHccccccc---cCCceEEEeeeechhhhhhhc
Q 002863 439 NQGYSLIRNLLHACLLEEE---KDNSVKMHYVVRDMALWIAST 478 (873)
Q Consensus 439 ~~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~~~a~~i~~~ 478 (873)
+.++ ++++|+++||++.. ...+|+|||++|++|++++.+
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHH
Confidence 7777 99999999999986 345799999999999998865
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=7.2e-40 Score=378.05 Aligned_cols=285 Identities=16% Similarity=0.229 Sum_probs=231.1
Q ss_pred cccchhHHHHHHHHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCce-EEEEEeCCcccHHHHHHHHHHHhC
Q 002863 145 TVVGLQLTFDRVWRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDF-VIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
..|||+.++++|.++|.+ +..++|+|+||||+||||||+++|++. +++.+|+. ++|+++++.++...++..|++.++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 459999999999999976 568899999999999999999999876 56778986 999999999998888888877543
Q ss_pred CCCcc----c-----cccCHHHHHHHHHHHh---ccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhhh
Q 002863 223 LFNES----W-----KNKSMQEKAQQIFNIL---SKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVCG 290 (873)
Q Consensus 223 ~~~~~----~-----~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 290 (873)
..... . ...+.+.....+++.+ .++|+||||||||+...|+.+ ..||+||||||++.++.
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f--------~pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--------NLSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH--------HSSCCEEEECSCSHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh--------CCCeEEEEeccChHHHH
Confidence 21100 0 0113345566777766 689999999999998778764 25789999999999987
Q ss_pred ccccccceeec------cCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCC-ChHHHHH
Q 002863 291 QMEAHRSFKVE------CLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAMASRK-TPREWEH 363 (873)
Q Consensus 291 ~~~~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~-~~~~w~~ 363 (873)
.+.....++++ +|+++|||+||++.++.. ..++..+| |+|+||||+++|+.|+.+. +..+|+.
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 55444567777 999999999999985322 12334444 9999999999999999874 6778875
Q ss_pred HHHHHHchhcccCCchhHHHHHhhhccccCCcchh-HHHHhhhccCCCCccccHHHHHHHHHHcCCccCCChhhHHHHHH
Q 002863 364 AIEVLRSSASKFAGMEKRVFSRLKFSFDFLPSDAT-RFCLLYCTLFPEDYRISIEDLIDCWICEGFLDDHDGIEARNQGY 442 (873)
Q Consensus 364 ~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~~~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~ 442 (873)
. ....+..++.+||+.||+ +. |.||+|||+||+++.|+++.++.+|+++| ++.++
T Consensus 350 ~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe 405 (1221)
T 1vt4_I 350 V-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVM 405 (1221)
T ss_dssp C-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHH
T ss_pred C-------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHH
Confidence 2 125899999999999999 67 99999999999999999999999999887 13577
Q ss_pred HHHHHHHHccccccc-cCCceEEEeeeechh
Q 002863 443 SLIRNLLHACLLEEE-KDNSVKMHYVVRDMA 472 (873)
Q Consensus 443 ~~l~~L~~~~ll~~~-~~~~~~mHdlv~~~a 472 (873)
.++++|+++||++.. ...+|+|||++++++
T Consensus 406 ~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 899999999999986 457899999998855
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.8e-37 Score=391.50 Aligned_cols=310 Identities=18% Similarity=0.273 Sum_probs=253.3
Q ss_pred CCcccchhHHHHHHHHHHhc--CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCC-CCceEEEEEeCCcc--cHHHHHHHH
Q 002863 143 PPTVVGLQLTFDRVWRCLME--EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPN-HFDFVIWVVVSRDL--QLEKIQEII 217 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~--~~~~~~~~i 217 (873)
++.||||++++++|.++|.. ++.++|+|+||||+||||||+++|++...... .|+.++||++++.. +....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 45699999999999999963 57899999999999999999999998522233 55688899999854 344557777
Q ss_pred HHHhCCCCc--cccccCHHHHHHHHHHHhccC--CeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhhhc-c
Q 002863 218 AKKIGLFNE--SWKNKSMQEKAQQIFNILSKK--KFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVCGQ-M 292 (873)
Q Consensus 218 ~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~-~ 292 (873)
+..++.... .....+.+.....++..+.++ |+||||||||+...|..+ ..|++||||||++.++.. +
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTTTCC
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------cCCCEEEEEcCCHHHHHhhc
Confidence 777765331 123456788889999999877 999999999998777664 568899999999999854 4
Q ss_pred ccccceeecc-CChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHHHHHch
Q 002863 293 EAHRSFKVEC-LRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAMASRKTPREWEHAIEVLRSS 371 (873)
Q Consensus 293 ~~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~l~~~ 371 (873)
+....+++.+ |+++||++||...++... +++++++++|+++|+|+||||+++|++|+.+. .+|+..++.+...
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNK 348 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhh
Confidence 5667899996 999999999999885433 34456799999999999999999999998864 4799988888776
Q ss_pred hcccC-----CchhHHHHHhhhccccCCcchhHHHHhhhccCCCCccccHHHHHHHHHHcCCccCCChhhHHHHHHHHHH
Q 002863 372 ASKFA-----GMEKRVFSRLKFSFDFLPSDATRFCLLYCTLFPEDYRISIEDLIDCWICEGFLDDHDGIEARNQGYSLIR 446 (873)
Q Consensus 372 ~~~~~-----~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~l~ 446 (873)
.+..- ...+.+..++.+||+.||+ +.|.||+|||+||+++.|+++.++.+|.++ ++.++.+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~ 416 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQ 416 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHH
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHH
Confidence 43321 1124799999999999999 799999999999999999999999999553 366788999
Q ss_pred HHHHccccccccCC---ceEEEeeeechhhhhhhc
Q 002863 447 NLLHACLLEEEKDN---SVKMHYVVRDMALWIAST 478 (873)
Q Consensus 447 ~L~~~~ll~~~~~~---~~~mHdlv~~~a~~i~~~ 478 (873)
+|++++|++..... +|+||+++|++++..+.+
T Consensus 417 ~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 417 EFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 99999999976333 599999999999887654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=339.17 Aligned_cols=304 Identities=18% Similarity=0.291 Sum_probs=237.3
Q ss_pred CCcccchhHHHHHHHHHHhc--CCcEEEEEEeCCCCcHHHHHHHHHhhhccC-CCCC-ceEEEEEeCCcccHHHHHHH--
Q 002863 143 PPTVVGLQLTFDRVWRCLME--EHVGIVGLYGMGGVGKTTLLTQINNRFFDT-PNHF-DFVIWVVVSRDLQLEKIQEI-- 216 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~~-- 216 (873)
++.||||+.++++|.++|.. ++.++|+|+||||+||||||++++++. ++ ..+| +.++|++++.. +...+...
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 45799999999999999974 468899999999999999999999875 33 5678 58999999875 33333333
Q ss_pred -HHHHhCCCC--ccccccCHHHHHHHHHHHhcc--CCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhhhc
Q 002863 217 -IAKKIGLFN--ESWKNKSMQEKAQQIFNILSK--KKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVCGQ 291 (873)
Q Consensus 217 -i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~ 291 (873)
++..++... ......+.+.....+...+.+ +++||||||||+...+..+ ..|++||||||+..++..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh--------cCCCeEEEECCCcHHHHh
Confidence 344554211 112345667788888888876 7999999999986655432 457899999999988775
Q ss_pred cccccceee---ccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcCCChHHHHHHHHHH
Q 002863 292 MEAHRSFKV---ECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAMASRKTPREWEHAIEVL 368 (873)
Q Consensus 292 ~~~~~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~l 368 (873)
+. ...+++ ++|+++|+++||.+.++... ....+.+.+|+++|+|+||||..+|+.++.+. .+|...++.+
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l 345 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQL 345 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 43 334555 58999999999999987532 12235689999999999999999999998753 4799888888
Q ss_pred Hchhccc-----CCchhHHHHHhhhccccCCcchhHHHHhhhccCCCCccccHHHHHHHHHHcCCccCCChhhHHHHHHH
Q 002863 369 RSSASKF-----AGMEKRVFSRLKFSFDFLPSDATRFCLLYCTLFPEDYRISIEDLIDCWICEGFLDDHDGIEARNQGYS 443 (873)
Q Consensus 369 ~~~~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~ 443 (873)
....... ......+..++..||+.||+ +.|.||++||+||+++.|+.+.++..|.++ .+.+..
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~ 413 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVED 413 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHH
Confidence 7653221 11224799999999999999 799999999999999999999999999542 235678
Q ss_pred HHHHHHHccccccc---cCCceEEEeeeechhhhh
Q 002863 444 LIRNLLHACLLEEE---KDNSVKMHYVVRDMALWI 475 (873)
Q Consensus 444 ~l~~L~~~~ll~~~---~~~~~~mHdlv~~~a~~i 475 (873)
++++|++++|++.. ....|.||+++|++++..
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 89999999999865 234799999999999876
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=255.39 Aligned_cols=309 Identities=21% Similarity=0.216 Sum_probs=228.7
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS 562 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n 562 (873)
..+.+++.+++.+|. ....++++|++++|.+..++. ...+++|++|+|++|.++.+. +..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC--hhhhhCCccCCEEECCCC
Confidence 345667777777775 445689999999999988753 467899999999999988887 677899999999999998
Q ss_pred C---CCc-cccCcccCCEEecCCCCCCccc-hhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhh
Q 002863 563 D---LPC-EISNLVSLQYLDLSNSIPDRLP-LGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSL 637 (873)
Q Consensus 563 ~---lp~-~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~ 637 (873)
. +|. .+.++++|++|+|++|.+..++ ..+..+++|++|++++| .+..+++..|+.+++|++|++++| .+....
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~ 168 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC-NLTSIP 168 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESC-CCSSCC
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCC-cCcccC
Confidence 4 443 5788999999999999888774 56889999999999998 788888777899999999999886 344455
Q ss_pred HHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccc
Q 002863 638 VEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACA 717 (873)
Q Consensus 638 ~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 717 (873)
...+..+++|+.|+++.+.. ..+.........+|+.|++++|...+..+.......+|+.|++++| .++.+....+
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~ 244 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNI---NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAV 244 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCC---CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHH
T ss_pred hhHhcccCCCcEEeCCCCcC---cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHh
Confidence 66788889999999864433 3333333344457888999888776666655555668899999884 4554333333
Q ss_pred cccccccCccccccccEEEEccccCCCcC--cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceec
Q 002863 718 GEMKKIREIHGFHSLQNVYISHSKLRQVT--WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLI 795 (873)
Q Consensus 718 ~~~~~~~~~~~l~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 795 (873)
..+++|+.|+|++|.++.++ .+..+++|+.|+|++|.+.... +..+..+++|+.|+
T Consensus 245 ---------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 245 ---------RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE-------------PYAFRGLNYLRVLN 302 (477)
T ss_dssp ---------TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC-------------TTTBTTCTTCCEEE
T ss_pred ---------cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC-------------HHHhcCcccCCEEE
Confidence 56788999999988888764 4778889999999888765321 12566788899999
Q ss_pred ccCcccccccccCCCCCCCccEEeEccCcCcccCcCCCcC
Q 002863 796 LKGLNNLKNICSNALPFPRLKEMSVHECSKLRQLALDCNC 835 (873)
Q Consensus 796 L~~~~~L~~l~~~~~~~~~L~~L~l~~c~~L~~L~l~~n~ 835 (873)
|++ +.++.++... +.+|++|+.|.+++|+
T Consensus 303 L~~-N~l~~~~~~~----------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 303 VSG-NQLTTLEESV----------FHSVGNLETLILDSNP 331 (477)
T ss_dssp CCS-SCCSCCCGGG----------BSCGGGCCEEECCSSC
T ss_pred CCC-CcCceeCHhH----------cCCCcccCEEEccCCC
Confidence 988 4666655432 2344555555555554
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=5.5e-25 Score=239.53 Aligned_cols=271 Identities=18% Similarity=0.250 Sum_probs=132.2
Q ss_pred EEEEcCCCcccCCccccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC-
Q 002863 486 FLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL- 564 (873)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l- 564 (873)
.+...+..+..++....++++++|++++|.+..++....+++|++|++++|.++.++ .|..+++|++|++++|.+
T Consensus 48 ~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~l~~L~~L~l~~n~i~ 123 (347)
T 4fmz_A 48 KLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS----ALQNLTNLRELYLNEDNIS 123 (347)
T ss_dssp EEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG----GGTTCTTCSEEECTTSCCC
T ss_pred EEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch----HHcCCCcCCEEECcCCccc
Confidence 344444444444444455555555555555555554555555555555555554443 245555555555555522
Q ss_pred --CccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhc
Q 002863 565 --PCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELL 642 (873)
Q Consensus 565 --p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~ 642 (873)
|. +..+++|++|++++|.....+..+..+++|++|++++| .+..+++ ++.+++|++|++++|. ..... .+.
T Consensus 124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~--~~~ 196 (347)
T 4fmz_A 124 DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQ-IEDIS--PLA 196 (347)
T ss_dssp CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSC-CCCCG--GGG
T ss_pred Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCc-ccccc--ccc
Confidence 22 55555555555555533223333555555555555555 4444443 5555555555555542 11111 144
Q ss_pred CCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecccccccc
Q 002863 643 GLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKK 722 (873)
Q Consensus 643 ~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 722 (873)
.+++|+.|+++.+....... .....+|+.|++++|.+....+ +..+++|+.|++++| .++++ ..
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~-----~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~--~~------ 260 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP-----VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN-QISDI--NA------ 260 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCC--GG------
T ss_pred CCCccceeecccCCCCCCch-----hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC-ccCCC--hh------
Confidence 55555555553222211111 1112245555555555544433 455555555555553 23321 11
Q ss_pred ccCccccccccEEEEccccCCCcCcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCc
Q 002863 723 IREIHGFHSLQNVYISHSKLRQVTWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGL 799 (873)
Q Consensus 723 ~~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 799 (873)
+..+++|+.|++++|.++.++.+..+++|+.|++++|......+ ..+..+++|++|++++|
T Consensus 261 ---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 261 ---VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM-------------EVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp ---GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGH-------------HHHHTCTTCSEEECCSS
T ss_pred ---HhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcCh-------------hHhhccccCCEEEccCC
Confidence 13455566666666655555555556666666666655432211 13344556666666553
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.3e-25 Score=254.34 Aligned_cols=141 Identities=23% Similarity=0.269 Sum_probs=113.8
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccc-cCCCCchhhhcCCcceEEecCC
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFK-NDKVNYHFFKSMASLRVLKLSH 561 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~l~~Lr~L~L~~ 561 (873)
..+.+.+.+++.+|. ..+++++|++++|.+..++. ...+++|++|++++|.+. .++ +..|.++++|++|+|++
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~--~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR--NNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC--TTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC--cccccccccCCEEeCCC
Confidence 345667777888876 45789999999999988643 477899999999999875 455 56788999999999999
Q ss_pred CCC----CccccCcccCCEEecCCCCCCc-cchh--hhcCCCCcEeeccccccccccChh-hhCCCcccceEecccc
Q 002863 562 SDL----PCEISNLVSLQYLDLSNSIPDR-LPLG--LKYLVNLKCLNLEYTFRLSRISPQ-VISNLKMLRVLRMFEC 630 (873)
Q Consensus 562 n~l----p~~i~~L~~L~~L~L~~~~i~~-lp~~--i~~l~~L~~L~L~~~~~l~~l~~~-~i~~l~~L~~L~l~~~ 630 (873)
|.+ |..++++++|++|+|++|.+.. +|.. +..+++|++|++++| .+..+++. .++++++|++|++++|
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC
Confidence 944 7788999999999999998875 4444 888999999999999 77777544 3788999999999876
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.2e-24 Score=236.84 Aligned_cols=284 Identities=18% Similarity=0.215 Sum_probs=228.3
Q ss_pred cccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC--CccccCcccCCEE
Q 002863 500 VGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL--PCEISNLVSLQYL 577 (873)
Q Consensus 500 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l--p~~i~~L~~L~~L 577 (873)
...++++++|+++++.+..++....+++|++|++++|.++.++ . |..+++|++|++++|.+ .+.+.++++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~--~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDIS--P--LSNLVKLTNLYIGTNKITDISALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccch--h--hhcCCcCCEEEccCCcccCchHHcCCCcCCEE
Confidence 3456799999999999999988888999999999999998887 4 89999999999999944 3468999999999
Q ss_pred ecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcch
Q 002863 578 DLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSN 657 (873)
Q Consensus 578 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 657 (873)
++++|.+..+|. +..+++|++|++++|..+..++. +..+++|++|++.+|. ..... .+..+++|+.|+++.+..
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~-~~~~~--~~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESK-VKDVT--PIANLTDLYSLSLNYNQI 189 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSC-CCCCG--GGGGCTTCSEEECTTSCC
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCC-cCCch--hhccCCCCCEEEccCCcc
Confidence 999999999987 99999999999999966665554 8999999999999864 22222 278899999999954433
Q ss_pred hhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEE
Q 002863 658 HALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYI 737 (873)
Q Consensus 658 ~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L 737 (873)
. .+.. .....+|+.|++++|.+....+ +..+++|++|++++| .++++.+ +..+++|+.|++
T Consensus 190 ~---~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n-~l~~~~~-----------~~~l~~L~~L~l 250 (347)
T 4fmz_A 190 E---DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN-KITDLSP-----------LANLSQLTWLEI 250 (347)
T ss_dssp C---CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCGG-----------GTTCTTCCEEEC
T ss_pred c---cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC-ccCCCcc-----------hhcCCCCCEEEC
Confidence 3 3222 2233479999999999887664 788999999999985 4443322 267899999999
Q ss_pred ccccCCCcCcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcccccccc-cCCCCCCCcc
Q 002863 738 SHSKLRQVTWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNIC-SNALPFPRLK 816 (873)
Q Consensus 738 ~~~~l~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~-~~~~~~~~L~ 816 (873)
++|.++.++.+..+++|++|++++|.... + ..+..+++|+.|++++|+ +.... .....+++|+
T Consensus 251 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~--------------~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 251 GTNQISDINAVKDLTKLKMLNVGSNQISD-I--------------SVLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLT 314 (347)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSSCCCC-C--------------GGGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCS
T ss_pred CCCccCCChhHhcCCCcCEEEccCCccCC-C--------------hhhcCCCCCCEEECcCCc-CCCcChhHhhccccCC
Confidence 99999999989999999999999997642 1 146778999999999964 44433 3345689999
Q ss_pred EEeEccCcCcccC
Q 002863 817 EMSVHECSKLRQL 829 (873)
Q Consensus 817 ~L~l~~c~~L~~L 829 (873)
.|++++|+ ++.+
T Consensus 315 ~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 315 TLFLSQNH-ITDI 326 (347)
T ss_dssp EEECCSSS-CCCC
T ss_pred EEEccCCc-cccc
Confidence 99998775 4443
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=7.1e-25 Score=249.64 Aligned_cols=304 Identities=19% Similarity=0.197 Sum_probs=242.8
Q ss_pred EEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCCC
Q 002863 507 TRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNS 582 (873)
Q Consensus 507 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~ 582 (873)
+.++.+++.+..+|.. -.++++.|++++|.++.++ +..|.++++|++|+|++|.+ |..|+++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLN--QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceEC--HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4577777888888764 3478999999999999988 67899999999999999954 778999999999999999
Q ss_pred CCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHH
Q 002863 583 IPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQ 661 (873)
Q Consensus 583 ~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 661 (873)
.+..+|.. |.++++|++|+|++| .+..+++..|.++++|++|+++++ .+....+..+..+++|+.|+++.+....
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 166 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTS-- 166 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSS--
T ss_pred cCCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCcc--
Confidence 99999975 789999999999999 888888888999999999999986 3444556678899999999997554332
Q ss_pred HhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEcccc
Q 002863 662 RLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSK 741 (873)
Q Consensus 662 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 741 (873)
+.........+|+.|++++|.+....+..+..+++|+.|++++|+.+..+.+..+ ...+|+.|+|++|+
T Consensus 167 -~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----------~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 167 -IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL----------YGLNLTSLSITHCN 235 (477)
T ss_dssp -CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT----------TTCCCSEEEEESSC
T ss_pred -cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc----------cCccccEEECcCCc
Confidence 2222222334899999999999888888899999999999999877665433322 34599999999999
Q ss_pred CCCcC--cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCccccccccc-CCCCCCCccEE
Q 002863 742 LRQVT--WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICS-NALPFPRLKEM 818 (873)
Q Consensus 742 l~~l~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~-~~~~~~~L~~L 818 (873)
++.++ .+..+++|+.|+|++|.+.... ...+..+++|+.|+|++ +.+..+.. ....+++|+.|
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------------~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIE-------------GSMLHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCCEEC-------------TTSCTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEE
T ss_pred ccccCHHHhcCccccCeeECCCCcCCccC-------------hhhccccccCCEEECCC-CccceECHHHhcCcccCCEE
Confidence 99987 5788999999999999865221 12567899999999999 56666643 45678999999
Q ss_pred eEccCcCcccCcCCCcCCCCcceEE
Q 002863 819 SVHECSKLRQLALDCNCGLERKIII 843 (873)
Q Consensus 819 ~l~~c~~L~~L~l~~n~~l~~l~~~ 843 (873)
+++++ +++.++...-..+.+|+.+
T Consensus 302 ~L~~N-~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 302 NVSGN-QLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp ECCSS-CCSCCCGGGBSCGGGCCEE
T ss_pred ECCCC-cCceeCHhHcCCCcccCEE
Confidence 99987 7888876543333444444
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=3.3e-24 Score=252.10 Aligned_cols=331 Identities=17% Similarity=0.137 Sum_probs=224.3
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS 562 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n 562 (873)
..+.+.+.+++.+|. ....++++|++++|.+..+++ ...+++|++|++++|.+..+. +..|.++++|++|+|++|
T Consensus 15 ~~~~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 15 KTYNCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH--EDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TEEECTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEEC--TTTTTTCTTCCEEECTTC
T ss_pred ceEECCCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeC--hhhccCccccCeeeCCCC
Confidence 456667778888775 345689999999999998854 378899999999999998887 678999999999999999
Q ss_pred CC----CccccCcccCCEEecCCCCCCcc-chhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhh
Q 002863 563 DL----PCEISNLVSLQYLDLSNSIPDRL-PLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSL 637 (873)
Q Consensus 563 ~l----p~~i~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~ 637 (873)
.+ |..++++++|++|++++|.+..+ |..++++++|++|++++| .+..++...+..+++|++|++++| .+....
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 169 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNN-AIHYLS 169 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSS-CCCEEC
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccC-cccccC
Confidence 55 77899999999999999999998 567999999999999999 788775333667999999999986 445556
Q ss_pred HHHhcCCCCCc--eeEEEEcchhhHHHhhccCC-----------------------------------------------
Q 002863 638 VEELLGLEHLN--VLTITLHSNHALQRLLSSSR----------------------------------------------- 668 (873)
Q Consensus 638 ~~~l~~l~~L~--~L~l~~~~~~~l~~~~~~~~----------------------------------------------- 668 (873)
+..++.+++|+ .|+++.+. +....+...
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~---l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGND---IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCC---CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred hhhhhhhcccceeEEecCCCc---cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChh
Confidence 77788888888 44442221 111111000
Q ss_pred ----CccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCC
Q 002863 669 ----FQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQ 744 (873)
Q Consensus 669 ----~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~ 744 (873)
....+|+.|++++|.+.+..+..+..+++|+.|++++| .++. .|..+ ..+++|++|++++|.++.
T Consensus 247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~-lp~~l---------~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSE-LPSGL---------VGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSC-CCSSC---------CSCTTCCEEECTTCCCSB
T ss_pred HhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCC-CChhh---------cccccCCEEECccCCcCc
Confidence 00115777888888877777777888888888888874 4443 23333 345566666666665555
Q ss_pred cC--cccccCCCcEEeeccCccchhhcccCc--c----------ccccccc--ccccccccccceecccCccccccc-cc
Q 002863 745 VT--WLILAPNLKHLEVQNCPYMEEIINIGK--L----------GEVPAEV--MENLTPFARLEYLILKGLNNLKNI-CS 807 (873)
Q Consensus 745 l~--~l~~l~~L~~L~L~~~~~~~~~~~~~~--~----------~~~~~~~--~~~~~~~~~L~~L~L~~~~~L~~l-~~ 807 (873)
++ .+..+++|+.|++++|.....++.... . ..+.... +..+..+++|++|+++++ .+..+ +.
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 394 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTE 394 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTT
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHH
Confidence 42 455566666666666544322211000 0 0000000 224566778888888774 34444 33
Q ss_pred CCCCCCCccEEeEcc--------------CcCcccCcCCCcC
Q 002863 808 NALPFPRLKEMSVHE--------------CSKLRQLALDCNC 835 (873)
Q Consensus 808 ~~~~~~~L~~L~l~~--------------c~~L~~L~l~~n~ 835 (873)
....+++|+.|++++ +++|+.|.+++|.
T Consensus 395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 445577888877653 3456666666554
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.8e-24 Score=239.27 Aligned_cols=284 Identities=18% Similarity=0.200 Sum_probs=204.8
Q ss_pred cccceEEEEeecccccccccc--CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCC
Q 002863 502 MWKDVTRMSLMDNKIKRLTVS--PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQ 575 (873)
Q Consensus 502 ~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~ 575 (873)
.+.++++++++++.+..+|.. ..+++|++|++++|.++.++ ...|..+++|++|+|++|.+ |..++++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccC--hhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 457899999999999998874 67899999999999998888 67799999999999999944 56689999999
Q ss_pred EEecCCCCCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEE
Q 002863 576 YLDLSNSIPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITL 654 (873)
Q Consensus 576 ~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 654 (873)
+|+|++|.+..+|.. +.++++|++|++++| .++.+++..++++++|++|+++++. +... .+..+++|+.|+++.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHV---DLSLIPSLFHANVSY 195 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSC-CSBC---CGGGCTTCSEEECCS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCc-CCcc---ccccccccceeeccc
Confidence 999999999999987 589999999999999 8888888889999999999999863 3222 356677888888753
Q ss_pred cchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccE
Q 002863 655 HSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQN 734 (873)
Q Consensus 655 ~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~ 734 (873)
+.. ..+. ...+|+.|++++|.+..... ...++|+.|++++| .+++. .++ ..+++|+.
T Consensus 196 n~l---~~~~-----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n-~l~~~--~~l---------~~l~~L~~ 252 (390)
T 3o6n_A 196 NLL---STLA-----IPIAVEELDASHNSINVVRG---PVNVELTILKLQHN-NLTDT--AWL---------LNYPGLVE 252 (390)
T ss_dssp SCC---SEEE-----CCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSS-CCCCC--GGG---------GGCTTCSE
T ss_pred ccc---cccC-----CCCcceEEECCCCeeeeccc---cccccccEEECCCC-CCccc--HHH---------cCCCCccE
Confidence 322 2211 11267777887777655432 12367777777774 34421 222 45677777
Q ss_pred EEEccccCCCc--CcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcccccccccCCCCC
Q 002863 735 VYISHSKLRQV--TWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSNALPF 812 (873)
Q Consensus 735 L~L~~~~l~~l--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~ 812 (873)
|++++|.++.+ ..+..+++|+.|+|++|.... + +.....+|+|++|+++++ .+..++.....+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~-------------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l 317 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L-------------NLYGQPIPTLKVLDLSHN-HLLHVERNQPQF 317 (390)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-E-------------ECSSSCCTTCCEEECCSS-CCCCCGGGHHHH
T ss_pred EECCCCcCCCcChhHccccccCCEEECCCCcCcc-c-------------CcccCCCCCCCEEECCCC-cceecCcccccc
Confidence 77777777665 256677777777777776532 1 123455677777777773 566666555556
Q ss_pred CCccEEeEccCcCcccCcC
Q 002863 813 PRLKEMSVHECSKLRQLAL 831 (873)
Q Consensus 813 ~~L~~L~l~~c~~L~~L~l 831 (873)
++|+.|++++|+ ++.+++
T Consensus 318 ~~L~~L~L~~N~-i~~~~~ 335 (390)
T 3o6n_A 318 DRLENLYLDHNS-IVTLKL 335 (390)
T ss_dssp TTCSEEECCSSC-CCCCCC
T ss_pred CcCCEEECCCCc-cceeCc
Confidence 777777776542 444443
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=4.5e-24 Score=245.93 Aligned_cols=138 Identities=25% Similarity=0.282 Sum_probs=110.0
Q ss_pred ceEEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCC
Q 002863 484 EKFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSH 561 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~ 561 (873)
+..+..++.+++.+|.. .++++++|++++|.+..++. ...+++|++|++++|.++.++ +..|.++++|++|+|++
T Consensus 2 ~~~l~ls~n~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKD-LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD--ISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CCEEECTTSCCSSCCCS-CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEE--GGGGTTCTTCCEEECCS
T ss_pred cceEecCCCCccccccc-ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcC--hHHhhcccCCCEEecCC
Confidence 35677788888888753 34799999999999988764 478899999999999998887 67899999999999999
Q ss_pred CCC---CccccCcccCCEEecCCCCCCc--cchhhhcCCCCcEeeccccccccccChhhhCCCccc--ceEecccc
Q 002863 562 SDL---PCEISNLVSLQYLDLSNSIPDR--LPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKML--RVLRMFEC 630 (873)
Q Consensus 562 n~l---p~~i~~L~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L--~~L~l~~~ 630 (873)
|.+ |.. .+++|++|+|++|.+.. +|..++++++|++|++++| .++.. .++.+++| ++|++++|
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~---~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKS---SVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCGG---GGGGGTTSCEEEEEEEEC
T ss_pred CceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccchh---hccccccceeeEEEeecc
Confidence 954 555 78999999999998876 5688999999999999998 56542 25555555 66666654
No 13
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=3e-24 Score=241.11 Aligned_cols=290 Identities=16% Similarity=0.127 Sum_probs=166.8
Q ss_pred cccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCCC-ccccCcccCCEEe
Q 002863 500 VGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDLP-CEISNLVSLQYLD 578 (873)
Q Consensus 500 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~lp-~~i~~L~~L~~L~ 578 (873)
...++++++|++++|.+..++....+++|++|++++|.++.++ +..+++|++|++++|.+. -.++++++|++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~ 112 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-----LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLN 112 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-----cccCCCCCEEECcCCCCceeecCCCCcCCEEE
Confidence 3445667777777777776665566677777777777766654 566777777777777331 1266777777777
Q ss_pred cCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchh
Q 002863 579 LSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNH 658 (873)
Q Consensus 579 L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 658 (873)
+++|.+..+| ++.+++|++|++++| .++.++ ++++++|++|++++|...... .+..+++|+.|+++.+...
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccc
Confidence 7777776665 667777777777777 666653 667777777777765322211 3566677777776433322
Q ss_pred hHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEc
Q 002863 659 ALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYIS 738 (873)
Q Consensus 659 ~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 738 (873)
.+. .....+|+.|++++|.+.+. .+..+++|+.|++++ +.++++ | + ..+++|+.|+++
T Consensus 184 ---~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~-N~l~~i-p--~---------~~l~~L~~L~l~ 241 (457)
T 3bz5_A 184 ---ELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSS-NKLTEI-D--V---------TPLTQLTYFDCS 241 (457)
T ss_dssp ---CCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCS-SCCSCC-C--C---------TTCTTCSEEECC
T ss_pred ---eec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcC-Cccccc-C--c---------cccCCCCEEEee
Confidence 221 22233677777777766654 356667777777776 344432 1 1 456667777777
Q ss_pred cccCCCcCcccccCCCcEEeeccCccchhhcc-cCcccccccccccccccccccceecccCcccccccccCCCCCCCccE
Q 002863 739 HSKLRQVTWLILAPNLKHLEVQNCPYMEEIIN-IGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSNALPFPRLKE 817 (873)
Q Consensus 739 ~~~l~~l~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~ 817 (873)
+|.++.++ ++.+++|+.|++++|....--.. ....+.+ ....+++|+.|++++|+.+..++. .+++|+.
T Consensus 242 ~N~l~~~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~------~~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~ 311 (457)
T 3bz5_A 242 VNPLTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF------QAEGCRKIKELDVTHNTQLYLLDC---QAAGITE 311 (457)
T ss_dssp SSCCSCCC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEE------ECTTCTTCCCCCCTTCTTCCEEEC---TTCCCSC
T ss_pred CCcCCCcC-HHHCCCCCEEeccCCCCCEEECCCCccCCcc------cccccccCCEEECCCCcccceecc---CCCcceE
Confidence 77666654 44455555555554432211100 0011111 124456666666666665555553 2344444
Q ss_pred EeEccCcCcccCcCCCcC
Q 002863 818 MSVHECSKLRQLALDCNC 835 (873)
Q Consensus 818 L~l~~c~~L~~L~l~~n~ 835 (873)
|++++|++|+.|+++.|.
T Consensus 312 L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 312 LDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp CCCTTCTTCCEEECTTCC
T ss_pred echhhcccCCEEECCCCc
Confidence 455555555555544443
No 14
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=6.3e-24 Score=246.79 Aligned_cols=138 Identities=25% Similarity=0.325 Sum_probs=113.0
Q ss_pred ceEEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCC
Q 002863 484 EKFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSH 561 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~ 561 (873)
...+..++.+++.+|. ..++++++|++++|.+..++. ...+++|++|++++|.++.++ +..|.++++|++|+|++
T Consensus 33 ~~~l~ls~~~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD--FHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEEC--TTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCC--HHHhCCCCCCCEEECCC
Confidence 3577788888888875 335799999999999998864 478899999999999999887 67899999999999999
Q ss_pred CC---CCccccCcccCCEEecCCCCCCccc--hhhhcCCCCcEeeccccccccccChhhhCCCccc--ceEecccc
Q 002863 562 SD---LPCEISNLVSLQYLDLSNSIPDRLP--LGLKYLVNLKCLNLEYTFRLSRISPQVISNLKML--RVLRMFEC 630 (873)
Q Consensus 562 n~---lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L--~~L~l~~~ 630 (873)
|. +|.. .+++|++|+|++|.+..+| ..++++++|++|++++| .++... +..+++| ++|++++|
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLV 179 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEES
T ss_pred CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecc
Confidence 94 4665 8999999999999998865 68999999999999998 666533 4444444 77777764
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=5.8e-24 Score=246.92 Aligned_cols=165 Identities=24% Similarity=0.251 Sum_probs=121.4
Q ss_pred EEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC
Q 002863 487 LVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL 564 (873)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l 564 (873)
+...+.+++.+|. ..++++++|++++|.+..++. ...+++|++|++++|.++.++ +..|.++++|++|+|++|.+
T Consensus 10 c~~~~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE--GDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccC--hhhccccccCCEEECCCCcc
Confidence 4555667777775 344688888888888877643 367888888888888888777 66788888888888888843
Q ss_pred ---Cc-cccCcccCCEEecCCCCCCcc--chhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhH
Q 002863 565 ---PC-EISNLVSLQYLDLSNSIPDRL--PLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLV 638 (873)
Q Consensus 565 ---p~-~i~~L~~L~~L~L~~~~i~~l--p~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~ 638 (873)
|. .++++++|++|++++|.+..+ |..++++++|++|++++|..+..+|+..++++++|++|++++|. +....+
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 165 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQS 165 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccCh
Confidence 43 488888888888888888744 56788888888888888844777776668888888888888753 344445
Q ss_pred HHhcCCCCCceeEEEEc
Q 002863 639 EELLGLEHLNVLTITLH 655 (873)
Q Consensus 639 ~~l~~l~~L~~L~l~~~ 655 (873)
..++.+++|+.|+++.+
T Consensus 166 ~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp TTTTTCSEEEEEEEECS
T ss_pred hhhhccccCceEecccC
Confidence 55556666666655443
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.4e-23 Score=237.70 Aligned_cols=245 Identities=19% Similarity=0.260 Sum_probs=113.4
Q ss_pred EcCCCcccCCccccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC---C
Q 002863 489 LTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL---P 565 (873)
Q Consensus 489 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l---p 565 (873)
..+.++..++....++++++|++++|.+..++....+++|++|++++|.+..++ + +.++++|++|++++|.+ |
T Consensus 53 l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~--~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 53 ADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P--LANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp CCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G--GTTCTTCCEEECCSSCCCCCG
T ss_pred cCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccCh--h--hcCCCCCCEEECCCCCCCCCh
Confidence 334444444444555566666666666555555555566666666666555554 2 55566666666666522 2
Q ss_pred ccccCcccCCEEecCCCCCCccchhhhcCCC---------------------CcEeeccccccccccChhhhCCCcccce
Q 002863 566 CEISNLVSLQYLDLSNSIPDRLPLGLKYLVN---------------------LKCLNLEYTFRLSRISPQVISNLKMLRV 624 (873)
Q Consensus 566 ~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~---------------------L~~L~L~~~~~l~~l~~~~i~~l~~L~~ 624 (873)
.+.++++|++|++++|.+..+|. +..+++ |++|++++| .+..++. +.++++|++
T Consensus 129 -~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~ 203 (466)
T 1o6v_A 129 -PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV--LAKLTNLES 203 (466)
T ss_dssp -GGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSE
T ss_pred -HHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChh--hccCCCCCE
Confidence 25555566666665555554442 444444 444444444 3333322 344444444
Q ss_pred EeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEee
Q 002863 625 LRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLV 704 (873)
Q Consensus 625 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 704 (873)
|++++|. .....+ ++.+++|+.|+++.+....+.. .....+|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 204 L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 204 LIATNNQ-ISDITP--LGILTNLDELSLNGNQLKDIGT-----LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273 (466)
T ss_dssp EECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred EEecCCc-cccccc--ccccCCCCEEECCCCCcccchh-----hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECC
Confidence 4444331 111111 3334444444443222111110 0111244444444444443332 4444445555554
Q ss_pred cCCCCcceeeccccccccccCccccccccEEEEccccCCCcCcccccCCCcEEeeccCcc
Q 002863 705 ECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVTWLILAPNLKHLEVQNCPY 764 (873)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~ 764 (873)
+| .++++. .+..+++|+.|++++|.++.++.+..+++|+.|++++|..
T Consensus 274 ~n-~l~~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 274 AN-QISNIS-----------PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp SS-CCCCCG-----------GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCC
T ss_pred CC-ccCccc-----------cccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcC
Confidence 42 222211 1234555555555555555555555555566666655544
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=1e-23 Score=256.48 Aligned_cols=303 Identities=20% Similarity=0.231 Sum_probs=199.2
Q ss_pred ceEEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCc-cccCCCCchhhhcCCcceEEecC
Q 002863 484 EKFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNY-FKNDKVNYHFFKSMASLRVLKLS 560 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~l~~Lr~L~L~ 560 (873)
...+.+++.+++.+|. .++++++|++++|.+..+.. ...+++|++|++++|. +..++ +..|.++++|++|+|+
T Consensus 6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~--~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID--KEAFRNLPNLRILDLG 81 (844)
T ss_dssp TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC--TTTTSSCTTCCEEECT
T ss_pred ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC--HHHhcCCCCCCEEECC
Confidence 4577788899999997 77899999999999988753 4789999999999995 55565 5779999999999999
Q ss_pred CCCC----CccccCcccCCEEecCCCCCCc-cchh--hhcCCCCcEeeccccccccccCh-hhhCCCcccceEeccccCC
Q 002863 561 HSDL----PCEISNLVSLQYLDLSNSIPDR-LPLG--LKYLVNLKCLNLEYTFRLSRISP-QVISNLKMLRVLRMFECGS 632 (873)
Q Consensus 561 ~n~l----p~~i~~L~~L~~L~L~~~~i~~-lp~~--i~~l~~L~~L~L~~~~~l~~l~~-~~i~~l~~L~~L~l~~~~~ 632 (873)
+|.+ |..|+++++|++|+|++|.+.. +|.. +.++++|++|+|++| .+..+++ ..|+++++|++|++++|.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~- 159 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQ- 159 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSC-
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCc-
Confidence 9954 8899999999999999998876 5655 899999999999999 6776643 468999999999999863
Q ss_pred CchhhHHHhcCC--CCCceeEEEEcchhhHHHhhccCC------Cc----------------------------------
Q 002863 633 FLDSLVEELLGL--EHLNVLTITLHSNHALQRLLSSSR------FQ---------------------------------- 670 (873)
Q Consensus 633 ~~~~~~~~l~~l--~~L~~L~l~~~~~~~l~~~~~~~~------~~---------------------------------- 670 (873)
+....+..+..+ ++|+.|+++.+... ...+... +.
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~---~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLY---SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSC---CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred CCeeCHHHcccccCCccceEECCCCccc---cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 333233333333 45555555422211 1000000 00
Q ss_pred ----------------------------cCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecccccccc
Q 002863 671 ----------------------------SISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKK 722 (873)
Q Consensus 671 ----------------------------~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 722 (873)
..+|+.|++++|.+.+..+..+..+++|+.|++++ +.++.+.+..+
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~----- 310 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-NKINKIADEAF----- 310 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEES-CCCCEECTTTT-----
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCC-CcCCCCChHHh-----
Confidence 12455555555555544444555555555555555 33333333222
Q ss_pred ccCccccccccEEEEccccCCCc--CcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcc
Q 002863 723 IREIHGFHSLQNVYISHSKLRQV--TWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLN 800 (873)
Q Consensus 723 ~~~~~~l~~L~~L~L~~~~l~~l--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 800 (873)
..+++|+.|+|++|.++.+ ..+..+++|+.|++++|.+.. ++ ...+..+++|+.|++++ +
T Consensus 311 ----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~------------~~~~~~l~~L~~L~Ls~-N 372 (844)
T 3j0a_A 311 ----YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQ------------DQTFKFLEKLQTLDLRD-N 372 (844)
T ss_dssp ----TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC-CC------------SSCSCSCCCCCEEEEET-C
T ss_pred ----cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc-cC------------hhhhcCCCCCCEEECCC-C
Confidence 4556666666666666554 245566666666666664421 10 12345567777777766 3
Q ss_pred cccccccCCCCCCCccEEeEccC
Q 002863 801 NLKNICSNALPFPRLKEMSVHEC 823 (873)
Q Consensus 801 ~L~~l~~~~~~~~~L~~L~l~~c 823 (873)
.++.++. +++|+.|.++++
T Consensus 373 ~l~~i~~----~~~L~~L~l~~N 391 (844)
T 3j0a_A 373 ALTTIHF----IPSIPDIFLSGN 391 (844)
T ss_dssp CSCCCSS----CCSCSEEEEESC
T ss_pred CCCcccC----CCCcchhccCCC
Confidence 4444332 566666666654
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=1.1e-24 Score=255.81 Aligned_cols=317 Identities=11% Similarity=0.179 Sum_probs=158.6
Q ss_pred ccceEEEEeecccccc-ccc-cCCCCcccEEEecCCc-ccc--CCCCchhhhcC------CcceEEecCCC---CCCc--
Q 002863 503 WKDVTRMSLMDNKIKR-LTV-SPTSPRLLTLFLNSNY-FKN--DKVNYHFFKSM------ASLRVLKLSHS---DLPC-- 566 (873)
Q Consensus 503 ~~~l~~l~l~~~~~~~-l~~-~~~~~~L~~L~l~~n~-l~~--~~~~~~~~~~l------~~Lr~L~L~~n---~lp~-- 566 (873)
++++++|++++|.+.. +|. ...+++|++|++++|. ++. +| ..+..+ ++|++|+|++| .+|.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp---~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK---DDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH---HHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch---HHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 4455555555544332 222 1334455555555554 432 22 222222 45555555555 3344
Q ss_pred cccCcccCCEEecCCCCCC-ccchhhhcCCCCcEeeccccccccccChhhhCCCcc-cceEeccccCCCchhhHHHhcCC
Q 002863 567 EISNLVSLQYLDLSNSIPD-RLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKM-LRVLRMFECGSFLDSLVEELLGL 644 (873)
Q Consensus 567 ~i~~L~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~-L~~L~l~~~~~~~~~~~~~l~~l 644 (873)
.++++++|++|++++|.+. .+| .++.+++|++|++++| .++.+|.. ++++++ |++|++++|. +. ..+..+..+
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~-l~-~lp~~~~~~ 399 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPAN-FCGFTEQVENLSFAHNK-LK-YIPNIFDAK 399 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTT-SEEECTTCCEEECCSSC-CS-SCCSCCCTT
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHh-hhhhcccCcEEEccCCc-Cc-ccchhhhhc
Confidence 4555555555555555444 455 4555555555555555 44444443 445555 5555555432 11 222233322
Q ss_pred C--CCceeEEEEcchhhHHHhhccCCC-------ccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeec
Q 002863 645 E--HLNVLTITLHSNHALQRLLSSSRF-------QSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIA 715 (873)
Q Consensus 645 ~--~L~~L~l~~~~~~~l~~~~~~~~~-------~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 715 (873)
+ +|+.|+++.+ .+....+.... ...+|+.|++++|.+....+..+..+++|+.|++++| .++.+...
T Consensus 400 ~l~~L~~L~Ls~N---~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~ 475 (636)
T 4eco_A 400 SVSVMSAIDFSYN---EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKN 475 (636)
T ss_dssp CSSCEEEEECCSS---CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSS
T ss_pred ccCccCEEECcCC---cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHH
Confidence 2 4555555322 22221111111 2235566666666555433333444566666666653 33332222
Q ss_pred cccccccccCccccccccEEEEccccCCCcC-ccc--ccCCCcEEeeccCccchhhcccCcccccccccccccccccccc
Q 002863 716 CAGEMKKIREIHGFHSLQNVYISHSKLRQVT-WLI--LAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLE 792 (873)
Q Consensus 716 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 792 (873)
.+... .+....+++|+.|+|++|.++.+| .+. .+++|+.|+|++|.+.. ++ ..+..+++|+
T Consensus 476 ~~~~~--~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip-------------~~~~~l~~L~ 539 (636)
T 4eco_A 476 SLKDE--NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FP-------------TQPLNSSTLK 539 (636)
T ss_dssp SSEET--TEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CC-------------CGGGGCSSCC
T ss_pred Hhccc--cccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cC-------------hhhhcCCCCC
Confidence 22100 000123348888888888888776 344 78888888888887653 22 2456788999
Q ss_pred eecccC------cccccccccCCCCCCCccEEeEccCcCcccCcCCCcCCCCcceEEechHHHhh
Q 002863 793 YLILKG------LNNLKNICSNALPFPRLKEMSVHECSKLRQLALDCNCGLERKIIIEAEERWWK 851 (873)
Q Consensus 793 ~L~L~~------~~~L~~l~~~~~~~~~L~~L~l~~c~~L~~L~l~~n~~l~~l~~~~~~~~~~~ 851 (873)
.|+|++ +.-...++.....+++|+.|++++|. ++.+|.... ..|+.++...+.+.
T Consensus 540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~---~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT---PNISVLDIKDNPNI 600 (636)
T ss_dssp EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC---TTCCEEECCSCTTC
T ss_pred EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh---CcCCEEECcCCCCc
Confidence 998854 33345566666678888888888763 466655432 33444444433333
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4.3e-24 Score=249.54 Aligned_cols=145 Identities=16% Similarity=0.203 Sum_probs=111.3
Q ss_pred cccceEEEEeecccccccccc--CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCC
Q 002863 502 MWKDVTRMSLMDNKIKRLTVS--PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQ 575 (873)
Q Consensus 502 ~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~ 575 (873)
.+.+++.+++++|.+..+|.. ..+++|++|++++|.++.++ +..|..+++|++|+|++|.+ |..++++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCC--hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 346788888888888887764 56788888888888888877 56788888888888888843 44578888888
Q ss_pred EEecCCCCCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEE
Q 002863 576 YLDLSNSIPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTIT 653 (873)
Q Consensus 576 ~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 653 (873)
+|+|++|.+..+|.. |+++++|++|++++| .++.+++..|+++++|++|++++|. +... .+..+++|+.|+++
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~---~~~~l~~L~~L~l~ 200 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHV---DLSLIPSLFHANVS 200 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSC-CSBC---CGGGCTTCSEEECC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCC-CCCc---Chhhhhhhhhhhcc
Confidence 888888888888876 478888888888888 7888887778888888888888763 2222 24456666666664
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=3.1e-24 Score=256.05 Aligned_cols=308 Identities=11% Similarity=0.120 Sum_probs=174.7
Q ss_pred cccccceEEEEeecccccc------------------ccccC---CCCcccEEEecCCccccCCCCchhhhcCCcceEEe
Q 002863 500 VGMWKDVTRMSLMDNKIKR------------------LTVSP---TSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLK 558 (873)
Q Consensus 500 ~~~~~~l~~l~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~ 558 (873)
+..+++++.|++++|.+.. +|... .+++|++|+|++|.+.... +..|.++++|++|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i--P~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL--PDFLYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC--CGGGGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC--hHHHhCCCCCCEEE
Confidence 4455667777777776666 55442 4667777777777654444 35566777777777
Q ss_pred cCCCC------CCccccCcc-------cCCEEecCCCCCCccch--hhhcCCCCcEeeccccccccccChhhhCCCcccc
Q 002863 559 LSHSD------LPCEISNLV-------SLQYLDLSNSIPDRLPL--GLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLR 623 (873)
Q Consensus 559 L~~n~------lp~~i~~L~-------~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~ 623 (873)
|++|. +|..+++++ +|++|+|++|.+..+|. .++++++|++|+|++| .++.+| .++++++|+
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp--~~~~L~~L~ 598 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE--AFGTNVKLT 598 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC--CCCTTSEES
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch--hhcCCCcce
Confidence 77764 344444444 67777777776667776 6777777777777776 566666 366777777
Q ss_pred eEeccccCCCchhhHHHhcCCCC-CceeEEEEcchhhHH----------------------Hhhcc-----CCCccCCcc
Q 002863 624 VLRMFECGSFLDSLVEELLGLEH-LNVLTITLHSNHALQ----------------------RLLSS-----SRFQSISIP 675 (873)
Q Consensus 624 ~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~l~----------------------~~~~~-----~~~~~~~L~ 675 (873)
+|++++|. +. ..+..+..+++ |+.|+++.+....+. ...+. ......+|+
T Consensus 599 ~L~Ls~N~-l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 599 DLKLDYNQ-IE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp EEECCSSC-CS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred EEECcCCc-cc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 77776643 22 44445666666 666666433322111 00000 001112455
Q ss_pred eEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcC-ccc--ccC
Q 002863 676 SLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT-WLI--LAP 752 (873)
Q Consensus 676 ~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~l~--~l~ 752 (873)
.|++++|.+....+..+..+++|+.|+|++| .++.+....+... .+....+++|+.|+|++|+++.+| .+. .++
T Consensus 677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~--~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 677 TVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPK--DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753 (876)
T ss_dssp EEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCT--TSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred EEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccc--cccccccCCccEEECCCCCCccchHHhhhccCC
Confidence 5555555544332222334556666666653 3332221111100 001123447888888888777776 343 678
Q ss_pred CCcEEeeccCccchhhcccCcccccccccccccccccccceecccCc------ccccccccCCCCCCCccEEeEccCcCc
Q 002863 753 NLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGL------NNLKNICSNALPFPRLKEMSVHECSKL 826 (873)
Q Consensus 753 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~------~~L~~l~~~~~~~~~L~~L~l~~c~~L 826 (873)
+|+.|+|++|.+.. ++ ..+..+++|+.|+|+++ .-...+|.....+++|+.|++++|. +
T Consensus 754 ~L~~L~Ls~N~L~~-lp-------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L 818 (876)
T 4ecn_A 754 YLSNMDVSYNCFSS-FP-------------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-I 818 (876)
T ss_dssp TCCEEECCSSCCSS-CC-------------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-C
T ss_pred CcCEEEeCCCCCCc-cc-------------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-C
Confidence 88888888886643 22 24556778888888653 2234455555567788888887763 3
Q ss_pred ccCcCC
Q 002863 827 RQLALD 832 (873)
Q Consensus 827 ~~L~l~ 832 (873)
..+|..
T Consensus 819 ~~Ip~~ 824 (876)
T 4ecn_A 819 RKVDEK 824 (876)
T ss_dssp CBCCSC
T ss_pred CccCHh
Confidence 555554
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1.6e-23 Score=249.71 Aligned_cols=316 Identities=19% Similarity=0.168 Sum_probs=220.4
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS 562 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n 562 (873)
..+.+++.+++.+|. ...+++++|++++|.+..++. ...+++|++|++++|.++.++ +..|.++++|++|+|++|
T Consensus 7 ~~~~cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE--PELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCC--TTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccC--HHHHhcccCcCEEECCCC
Confidence 456777888888875 345799999999999988775 477899999999999999888 788999999999999999
Q ss_pred ---CCCc-cccCcccCCEEecCCCCCCccc-hhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhh
Q 002863 563 ---DLPC-EISNLVSLQYLDLSNSIPDRLP-LGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSL 637 (873)
Q Consensus 563 ---~lp~-~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~ 637 (873)
.+|. .|+++++|++|+|++|.+..+| ..|+++++|++|++++| .+...++..++++++|++|++++|. +....
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 161 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNK-IQALK 161 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSC-CCCBC
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCc-ccccC
Confidence 4565 6999999999999999998887 56999999999999999 7888877778999999999999863 33334
Q ss_pred HHHhc--CCCCCceeEEEEcchhhHHHhhccCC---------------------------CccCCcceEEecCCCCCCcc
Q 002863 638 VEELL--GLEHLNVLTITLHSNHALQRLLSSSR---------------------------FQSISIPSLCLRGCRLEPFT 688 (873)
Q Consensus 638 ~~~l~--~l~~L~~L~l~~~~~~~l~~~~~~~~---------------------------~~~~~L~~L~L~~~~~~~~~ 688 (873)
+..+. .+++|+.|+++.+.. ....+... ....+|+.|++++|.+.+..
T Consensus 162 ~~~~~~~~~~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 238 (680)
T 1ziw_A 162 SEELDIFANSSLKKLELSSNQI---KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238 (680)
T ss_dssp HHHHGGGTTCEESEEECTTCCC---CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred HHHhhccccccccEEECCCCcc---cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC
Confidence 44433 557888888753321 11111000 01136888888888887777
Q ss_pred ccccccccc--cceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcC--cccccCCCcEEeeccCcc
Q 002863 689 IFSLASLRH--LQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT--WLILAPNLKHLEVQNCPY 764 (873)
Q Consensus 689 ~~~l~~l~~--L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~ 764 (873)
+..+..++. |+.|++++| .++.+.+..+ ..+++|+.|++++|.++.++ .+..+++|+.|++++|..
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~ 308 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYN-NLNVVGNDSF---------AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTS-CCCEECTTTT---------TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBC
T ss_pred hhHhhccCcCCCCEEECCCC-CcCccCcccc---------cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhh
Confidence 777777654 888888884 4555444444 46778888888888776652 567778888888876643
Q ss_pred chhhcccCcccccccccccccccccccceecccCccccccccc-CCCCCCCccEEeEccC
Q 002863 765 MEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICS-NALPFPRLKEMSVHEC 823 (873)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~-~~~~~~~L~~L~l~~c 823 (873)
...+.. ..+|.-....+..+++|++|++++ +.+..++. ....+++|+.|++++|
T Consensus 309 ~~~~~~----~~lp~i~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 309 KQSISL----ASLPKIDDFSFQWLKCLEHLNMED-NDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp CC----------CCEECTTTTTTCTTCCEEECCS-CCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred hccccc----ccccccChhhcccCCCCCEEECCC-CccCCCChhHhccccCCcEEECCCC
Confidence 321110 011111112445566666766666 33443332 2334566666666544
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=3.7e-24 Score=242.37 Aligned_cols=291 Identities=16% Similarity=0.194 Sum_probs=198.3
Q ss_pred EEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC-----CccccCcccCCEEecCC
Q 002863 507 TRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL-----PCEISNLVSLQYLDLSN 581 (873)
Q Consensus 507 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l-----p~~i~~L~~L~~L~L~~ 581 (873)
+.++.+++.+..+|. -.++|++|++++|.++.++ +..|.++++|++|+|++|.+ |..|.++++|++|+|++
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELN--ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEEC--TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCC--hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 356677788888887 4489999999999999887 67799999999999999954 56789999999999999
Q ss_pred CCCCcc-chhhhcCCCCcEeeccccccccccC--hhhhCCCcccceEeccccCCCchhhHHH-hcCCCCCceeEEEEcch
Q 002863 582 SIPDRL-PLGLKYLVNLKCLNLEYTFRLSRIS--PQVISNLKMLRVLRMFECGSFLDSLVEE-LLGLEHLNVLTITLHSN 657 (873)
Q Consensus 582 ~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~l~--~~~i~~l~~L~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~ 657 (873)
|.+..+ |..++++++|++|++++| .++... ...++++++|++|++++|. +....+.. +.++++|+.|+++.+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CccCccChhhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcc
Confidence 999887 678999999999999999 777632 2348999999999999864 34333443 78899999999854332
Q ss_pred hhHHHhhccCC----------------------------------CccCCcceEEecCCCCCCccccccccc--------
Q 002863 658 HALQRLLSSSR----------------------------------FQSISIPSLCLRGCRLEPFTIFSLASL-------- 695 (873)
Q Consensus 658 ~~l~~~~~~~~----------------------------------~~~~~L~~L~L~~~~~~~~~~~~l~~l-------- 695 (873)
....+... ....+|+.|++++|.+.+..+..+...
T Consensus 167 ---~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 167 ---KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp ---SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred ---cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 22111110 011245566666665544333222111
Q ss_pred -------------------------------cccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCC
Q 002863 696 -------------------------------RHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQ 744 (873)
Q Consensus 696 -------------------------------~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~ 744 (873)
++|+.|++++ +.+++..+.. +..+++|+.|+|++|.++.
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~---------~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK-SKIFALLKSV---------FSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS-SCCCEECTTT---------TTTCTTCCEEECTTSCCCE
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecC-ccccccchhh---------cccCCCCCEEECCCCcccc
Confidence 2344444443 2222222222 3566778888888887776
Q ss_pred cC--cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCccccccc-ccCCCCCCCccEEeEc
Q 002863 745 VT--WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNI-CSNALPFPRLKEMSVH 821 (873)
Q Consensus 745 l~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l-~~~~~~~~~L~~L~l~ 821 (873)
++ .+..+++|++|+|++|.+.... +..+..+++|++|+++++ .+..+ +.....+++|+.|+++
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSID-------------SRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEEC-------------GGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred cChhHhcCcccCCEEECCCCccCCcC-------------hhHhcCcccCCEEECCCC-cccccChhhccccccccEEECC
Confidence 53 5667788888888877653221 124567888888888884 56655 3455668888888887
Q ss_pred cCcCcccCcC
Q 002863 822 ECSKLRQLAL 831 (873)
Q Consensus 822 ~c~~L~~L~l 831 (873)
++ +++.+|.
T Consensus 380 ~N-~l~~~~~ 388 (455)
T 3v47_A 380 TN-QLKSVPD 388 (455)
T ss_dssp SS-CCSCCCT
T ss_pred CC-ccccCCH
Confidence 54 3444443
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=3.3e-24 Score=257.98 Aligned_cols=200 Identities=20% Similarity=0.205 Sum_probs=93.4
Q ss_pred cCCcceEEecCCC----CCCccccCc-ccCCEEecCCCCCC-ccchhhhcCCCCcEeecccccccc-ccChhhhCCCccc
Q 002863 550 SMASLRVLKLSHS----DLPCEISNL-VSLQYLDLSNSIPD-RLPLGLKYLVNLKCLNLEYTFRLS-RISPQVISNLKML 622 (873)
Q Consensus 550 ~l~~Lr~L~L~~n----~lp~~i~~L-~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~-~l~~~~i~~l~~L 622 (873)
.+++|++|+|++| .+|..+..+ ++|++|+|++|.+. .+|..++++++|++|++++| .+. .+|...++++++|
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGL 345 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC-cccCcCCHHHHhcCCCC
Confidence 3444444444444 234444333 55555555554443 34444555555555555555 333 4444445555555
Q ss_pred ceEeccccCCCchhhHHHhcCCC-CCceeEEEEcchhhHHHhhccCCCc--cCCcceEEecCCCCCCccccccccccccc
Q 002863 623 RVLRMFECGSFLDSLVEELLGLE-HLNVLTITLHSNHALQRLLSSSRFQ--SISIPSLCLRGCRLEPFTIFSLASLRHLQ 699 (873)
Q Consensus 623 ~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~l~~~~~~~~~~--~~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 699 (873)
++|++++| .+.+..+..+..++ +|+.|+++.+. +....+..... ..+|+.|++++|.+.+..|..+..+++|+
T Consensus 346 ~~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~Ls~N~---l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 421 (768)
T 3rgz_A 346 KVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNN---FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421 (768)
T ss_dssp CEEECCSS-EEEECCCTTHHHHTTTCSEEECCSSE---EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCC
T ss_pred CEEeCcCC-ccCccccHHHHhhhcCCcEEEccCCC---cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCC
Confidence 55555543 12222333333333 44444442211 11111111111 23567777777776666666677777777
Q ss_pred eEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCC-cC-cccccCCCcEEeeccCcc
Q 002863 700 TLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQ-VT-WLILAPNLKHLEVQNCPY 764 (873)
Q Consensus 700 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-l~-~l~~l~~L~~L~L~~~~~ 764 (873)
.|++++| .+++..|..+ ..+++|+.|++++|.++. +| .+..+++|+.|+|++|..
T Consensus 422 ~L~Ls~N-~l~~~~p~~l---------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 422 SLHLSFN-YLSGTIPSSL---------GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EEECCSS-EEESCCCGGG---------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EEECcCC-cccCcccHHH---------hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 7777763 3443344443 234445555555544432 22 344444555555544443
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.9e-23 Score=245.60 Aligned_cols=185 Identities=23% Similarity=0.191 Sum_probs=103.2
Q ss_pred ccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCC
Q 002863 568 ISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHL 647 (873)
Q Consensus 568 i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 647 (873)
++++++|++|++++|.+..+|..+..+++|++|++++| .+..+++..++++++|++|++++|..........+..+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 55666777777777777777777777777777777776 56666555566777777777766532111222335666667
Q ss_pred ceeEEEEcchhhHHHhh--ccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccC
Q 002863 648 NVLTITLHSNHALQRLL--SSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIRE 725 (873)
Q Consensus 648 ~~L~l~~~~~~~l~~~~--~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 725 (873)
+.|+++.+. +.... +.......+|+.|++++|.+.+..+..+..+++|+.|++++|. ++...+.. .
T Consensus 353 ~~L~l~~n~---l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~--------~ 420 (606)
T 3t6q_A 353 RELDLSHDD---IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQS--------P 420 (606)
T ss_dssp CEEECCSSC---CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC-EECCTTCC--------T
T ss_pred CEEECCCCc---cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc-CCCcccch--------h
Confidence 777664332 22221 1122223366677777776666656666666677777776632 32221111 1
Q ss_pred ccccccccEEEEccccCCCcC--cccccCCCcEEeeccCccc
Q 002863 726 IHGFHSLQNVYISHSKLRQVT--WLILAPNLKHLEVQNCPYM 765 (873)
Q Consensus 726 ~~~l~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~~ 765 (873)
+..+++|+.|++++|.++..+ .+..+++|++|++++|...
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 234555566666655554432 3455555666666555543
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.2e-23 Score=247.24 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=56.2
Q ss_pred cccccccEEEEccccCCC--cC-cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCccccc
Q 002863 727 HGFHSLQNVYISHSKLRQ--VT-WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLK 803 (873)
Q Consensus 727 ~~l~~L~~L~L~~~~l~~--l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 803 (873)
..+++|+.|++++|.++. ++ .+..+++|+.|+|++|.+.... +..+..+++|++|+++++ .+.
T Consensus 445 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------------~~~~~~l~~L~~L~Ls~N-~l~ 510 (606)
T 3vq2_A 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-------------WGVFDTLHRLQLLNMSHN-NLL 510 (606)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-------------TTTTTTCTTCCEEECCSS-CCS
T ss_pred cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC-------------hhhhcccccCCEEECCCC-cCC
Confidence 455666666666665554 23 4556666666666666544221 224667888888888885 455
Q ss_pred cc-ccCCCCCCCccEEeEccCcCcccCcCC
Q 002863 804 NI-CSNALPFPRLKEMSVHECSKLRQLALD 832 (873)
Q Consensus 804 ~l-~~~~~~~~~L~~L~l~~c~~L~~L~l~ 832 (873)
.+ +.....+++|+.|++++|. ++.+|..
T Consensus 511 ~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~ 539 (606)
T 3vq2_A 511 FLDSSHYNQLYSLSTLDCSFNR-IETSKGI 539 (606)
T ss_dssp CEEGGGTTTCTTCCEEECTTSC-CCCEESC
T ss_pred CcCHHHccCCCcCCEEECCCCc-CcccCHh
Confidence 44 4455667888888887763 4444443
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=8.8e-24 Score=228.23 Aligned_cols=266 Identities=18% Similarity=0.118 Sum_probs=209.0
Q ss_pred ceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecC
Q 002863 505 DVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLS 580 (873)
Q Consensus 505 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~ 580 (873)
+++.++++++.+..+|... .++|++|++++|.++.++ +..|.++++|++|+|++|.+ |..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELR--KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccC--HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6788899999888887543 478999999999998887 67799999999999999954 6789999999999999
Q ss_pred CCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCC-chhhHHHhcCCCCCceeEEEEcchhh
Q 002863 581 NSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSF-LDSLVEELLGLEHLNVLTITLHSNHA 659 (873)
Q Consensus 581 ~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 659 (873)
+|.+..+|..+. ++|++|++++| .++.+|+..++++++|++|+++++... ....+..+..+ +|+.|+++.+.
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~--- 183 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK--- 183 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB---
T ss_pred CCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC---
Confidence 999999998776 89999999999 889999888999999999999986321 12345556666 88899885443
Q ss_pred HHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEcc
Q 002863 660 LQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISH 739 (873)
Q Consensus 660 l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 739 (873)
+..+.... ..+|+.|++++|.+....+..+..+++|+.|++++ +.++++.+..+ ..+++|+.|++++
T Consensus 184 l~~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~---------~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 184 LTGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH-NQIRMIENGSL---------SFLPTLRELHLDN 250 (332)
T ss_dssp CSSCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS-SCCCCCCTTGG---------GGCTTCCEEECCS
T ss_pred CCccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC-CcCCcCChhHh---------hCCCCCCEEECCC
Confidence 33322211 13899999999999988888899999999999998 55665544444 5788999999999
Q ss_pred ccCCCcC-cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcc
Q 002863 740 SKLRQVT-WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLN 800 (873)
Q Consensus 740 ~~l~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 800 (873)
|.++.+| .+..+++|+.|++++|.+.. ++...+.+. .....+++|+.|++.+++
T Consensus 251 N~l~~lp~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~------~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 251 NKLSRVPAGLPDLKLLQVVYLHTNNITK-VGVNDFCPV------GFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp SCCCBCCTTGGGCTTCCEEECCSSCCCB-CCTTSSSCS------SCCSSSCCBSEEECCSSS
T ss_pred CcCeecChhhhcCccCCEEECCCCCCCc-cChhHcccc------ccccccccccceEeecCc
Confidence 9999886 58899999999999998653 222111110 011236789999999965
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=7.2e-24 Score=247.39 Aligned_cols=138 Identities=21% Similarity=0.168 Sum_probs=65.0
Q ss_pred EEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC
Q 002863 487 LVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL 564 (873)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l 564 (873)
+.+++.+++.+|. ...+++++|++++|.+..++. ...+++|++|++++|.++.++ +..|.++++|++|+|++|.+
T Consensus 12 ~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~--~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccC--cccccCchhCCEEeCcCCcC
Confidence 3344444444443 223345555555555544432 244555555555555555444 34455555555555555532
Q ss_pred ----CccccCcccCCEEecCCCCCCccch-hhhcCCCCcEeeccccccccc--cChhhhCCCcccceEeccc
Q 002863 565 ----PCEISNLVSLQYLDLSNSIPDRLPL-GLKYLVNLKCLNLEYTFRLSR--ISPQVISNLKMLRVLRMFE 629 (873)
Q Consensus 565 ----p~~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~--l~~~~i~~l~~L~~L~l~~ 629 (873)
|..|+++++|++|++++|.+..+|. .++++++|++|++++| .++. +|. .|+++++|++|++++
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~-~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPE-YFSNLTNLEHLDLSS 158 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCG-GGGGCTTCCEEECTT
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChh-hhcccCCCCEEeCcC
Confidence 2344455555555555554444443 3444555555555544 3333 222 244455555554444
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=2.1e-23 Score=230.85 Aligned_cols=272 Identities=17% Similarity=0.177 Sum_probs=222.4
Q ss_pred CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCCCCCCccchh-hhcCCCC
Q 002863 523 PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNL 597 (873)
Q Consensus 523 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L 597 (873)
..+++++.|++++|.++.++ ...|..+++|++|+|++|.+ |..++.+++|++|+|++|.+..+|.. ++++++|
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLP--AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESCEESEEC--THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCceEEEecCCchhhCC--hhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 45689999999999999999 78899999999999999955 45889999999999999999988754 8999999
Q ss_pred cEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceE
Q 002863 598 KCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSL 677 (873)
Q Consensus 598 ~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L 677 (873)
++|++++| .++.+|+..++++++|++|++++| .+....+..+..+++|+.|+++.+....+ ......+|+.|
T Consensus 120 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~l~~L~~L 191 (390)
T 3o6n_A 120 TVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV------DLSLIPSLFHA 191 (390)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC------CGGGCTTCSEE
T ss_pred CEEECCCC-ccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc------cccccccccee
Confidence 99999999 899999987899999999999986 34444556688999999999965443222 11223479999
Q ss_pred EecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcCcccccCCCcEE
Q 002863 678 CLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVTWLILAPNLKHL 757 (873)
Q Consensus 678 ~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L 757 (873)
++++|.+.. +...++|+.|++++| .++.+ +. ..+++|+.|++++|.++.++++..+++|++|
T Consensus 192 ~l~~n~l~~-----~~~~~~L~~L~l~~n-~l~~~-~~-----------~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L 253 (390)
T 3o6n_A 192 NVSYNLLST-----LAIPIAVEELDASHN-SINVV-RG-----------PVNVELTILKLQHNNLTDTAWLLNYPGLVEV 253 (390)
T ss_dssp ECCSSCCSE-----EECCSSCSEEECCSS-CCCEE-EC-----------CCCSSCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred ecccccccc-----cCCCCcceEEECCCC-eeeec-cc-----------cccccccEEECCCCCCcccHHHcCCCCccEE
Confidence 999998764 334578999999984 45543 21 2357899999999999999999999999999
Q ss_pred eeccCccchhhcccCcccccccccccccccccccceecccCcccccccccCCCCCCCccEEeEccC------------cC
Q 002863 758 EVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSNALPFPRLKEMSVHEC------------SK 825 (873)
Q Consensus 758 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~l~~c------------~~ 825 (873)
+|++|.+.... +..+..+++|+.|++++ +.++.++.....+|+|+.|++++| ++
T Consensus 254 ~Ls~n~l~~~~-------------~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 254 DLSYNELEKIM-------------YHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 319 (390)
T ss_dssp ECCSSCCCEEE-------------SGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred ECCCCcCCCcC-------------hhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCCcceecCccccccCc
Confidence 99999865332 23567899999999999 678888877778999999998865 56
Q ss_pred cccCcCCCcCC
Q 002863 826 LRQLALDCNCG 836 (873)
Q Consensus 826 L~~L~l~~n~~ 836 (873)
|+.|.+++|..
T Consensus 320 L~~L~L~~N~i 330 (390)
T 3o6n_A 320 LENLYLDHNSI 330 (390)
T ss_dssp CSEEECCSSCC
T ss_pred CCEEECCCCcc
Confidence 77778888764
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.2e-23 Score=247.30 Aligned_cols=141 Identities=20% Similarity=0.168 Sum_probs=120.4
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS 562 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n 562 (873)
..+.+++.+++.+|. ...+++++|++++|.+..++. ...+++|++|++++|.++.++ +..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~--~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE--DKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccC--HHHhhchhhcCEeECCCC
Confidence 356677888888876 345789999999999988765 468899999999999998887 677899999999999999
Q ss_pred CC----CccccCcccCCEEecCCCCCCccc-hhhhcCCCCcEeeccccccccc--cChhhhCCCcccceEecccc
Q 002863 563 DL----PCEISNLVSLQYLDLSNSIPDRLP-LGLKYLVNLKCLNLEYTFRLSR--ISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 563 ~l----p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~--l~~~~i~~l~~L~~L~l~~~ 630 (873)
.+ |..|+++++|++|+|++|.+..+| ..++++++|++|++++| .+.. +|. .++++++|++|++++|
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~-~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPA-YFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCG-GGGTCTTCCEEECCSS
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechH-hHhhcCCCCEEEccCC
Confidence 43 788999999999999999998887 66999999999999999 6764 454 4999999999999986
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=2.4e-23 Score=224.65 Aligned_cols=292 Identities=17% Similarity=0.131 Sum_probs=220.0
Q ss_pred ceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecC
Q 002863 505 DVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLS 580 (873)
Q Consensus 505 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~ 580 (873)
+++.++++++.+..+|... .+.|++|++++|.++.++ ...|.++++|++|+|++|.+ |..++++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIK--DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBC--TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeC--hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6778888888888877543 478999999999999988 67799999999999999943 7789999999999999
Q ss_pred CCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCC-chhhHHHhcCCCCCceeEEEEcchhh
Q 002863 581 NSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSF-LDSLVEELLGLEHLNVLTITLHSNHA 659 (873)
Q Consensus 581 ~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 659 (873)
+|.+..+|..+. ++|++|++++| .++.+++..++++++|++|+++++... ....+..+..+++|+.|+++.+..
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-- 183 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-- 183 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC--
T ss_pred CCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc--
Confidence 999999998765 79999999999 899999888999999999999986422 123456788899999999954433
Q ss_pred HHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEcc
Q 002863 660 LQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISH 739 (873)
Q Consensus 660 l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 739 (873)
..+.... ..+|+.|++++|.+.+..+..+..+++|+.|++++ +.++++.+..+ ..+++|+.|+|++
T Consensus 184 -~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~---------~~l~~L~~L~L~~ 249 (330)
T 1xku_A 184 -TTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF-NSISAVDNGSL---------ANTPHLRELHLNN 249 (330)
T ss_dssp -CSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS-SCCCEECTTTG---------GGSTTCCEEECCS
T ss_pred -ccCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC-CcCceeChhhc---------cCCCCCCEEECCC
Confidence 3222211 14899999999999888888899999999999998 45665544444 5688999999999
Q ss_pred ccCCCcC-cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcccccccccCCCCCCCccEE
Q 002863 740 SKLRQVT-WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSNALPFPRLKEM 818 (873)
Q Consensus 740 ~~l~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L 818 (873)
|.++.+| .+..+++|++|++++|.+.. ++...+.+. .....++.|+.|++.+++ +..+.....
T Consensus 250 N~l~~lp~~l~~l~~L~~L~l~~N~i~~-~~~~~f~~~------~~~~~~~~l~~l~l~~N~-~~~~~i~~~-------- 313 (330)
T 1xku_A 250 NKLVKVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPP------GYNTKKASYSGVSLFSNP-VQYWEIQPS-------- 313 (330)
T ss_dssp SCCSSCCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCS------SCCTTSCCCSEEECCSSS-SCGGGSCGG--------
T ss_pred CcCccCChhhccCCCcCEEECCCCcCCc-cChhhcCCc------ccccccccccceEeecCc-ccccccCcc--------
Confidence 9999886 68889999999999998653 222111111 012236789999999855 443322211
Q ss_pred eEccCcCcccCcCCCc
Q 002863 819 SVHECSKLRQLALDCN 834 (873)
Q Consensus 819 ~l~~c~~L~~L~l~~n 834 (873)
.+..+++|+.+.+++|
T Consensus 314 ~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 314 TFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGTTCCCGGGEEC---
T ss_pred ccccccceeEEEeccc
Confidence 2334455555655554
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=7.6e-23 Score=231.74 Aligned_cols=295 Identities=20% Similarity=0.244 Sum_probs=201.6
Q ss_pred ccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC---CccccCcccCCEE
Q 002863 501 GMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL---PCEISNLVSLQYL 577 (873)
Q Consensus 501 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l---p~~i~~L~~L~~L 577 (873)
..+++++.|++.++.+..++....+++|++|++++|.++.++ + +.++++|++|++++|.+ +. ++++++|++|
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~--~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--P--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCch--h--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 345689999999999999988888999999999999998887 4 89999999999999944 44 8999999999
Q ss_pred ecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcch
Q 002863 578 DLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSN 657 (873)
Q Consensus 578 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 657 (873)
++++|.+..+|. +.++++|++|++++| .+..++. ++++++|++|++.++ ... ...+.++++|+.|+++.+..
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~--~~~--~~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQ--VTD--LKPLANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEES--CCC--CGGGTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCc--ccC--chhhccCCCCCEEECcCCcC
Confidence 999999999986 999999999999999 7888764 888999999988642 121 12377888888888864443
Q ss_pred hhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecccccc-------------cccc
Q 002863 658 HALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEM-------------KKIR 724 (873)
Q Consensus 658 ~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~-------------~~~~ 724 (873)
..+.. .....+|+.|++++|.+.+..+ +..+++|+.|++++| .++++ ..+..+ ..+.
T Consensus 190 ~~~~~-----l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 190 SDISV-----LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN-QLKDI--GTLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp CCCGG-----GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCChh-----hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCC-Ccccc--hhhhcCCCCCEEECCCCccccch
Confidence 32221 1122367777777777766554 556677777777764 33322 111100 0011
Q ss_pred CccccccccEEEEccccCCCcCcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcccccc
Q 002863 725 EIHGFHSLQNVYISHSKLRQVTWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKN 804 (873)
Q Consensus 725 ~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 804 (873)
.+..+++|+.|++++|.++.++.+..+++|+.|++++|..... ..+..+++|+.|++++| .+..
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~l~~L~~L~L~~n-~l~~ 323 (466)
T 1o6v_A 260 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI---------------SPISNLKNLTYLTLYFN-NISD 323 (466)
T ss_dssp GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC---------------GGGGGCTTCSEEECCSS-CCSC
T ss_pred hhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCc---------------hhhcCCCCCCEEECcCC-cCCC
Confidence 1234455555555555555554455555555555555543211 12456778888888774 4554
Q ss_pred cccCCCCCCCccEEeEccC-----------cCcccCcCCCcC
Q 002863 805 ICSNALPFPRLKEMSVHEC-----------SKLRQLALDCNC 835 (873)
Q Consensus 805 l~~~~~~~~~L~~L~l~~c-----------~~L~~L~l~~n~ 835 (873)
++. ...+++|+.|++++| ++|+.|.+++|.
T Consensus 324 ~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 324 ISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred chh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCc
Confidence 443 345777888877644 455555555554
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.1e-23 Score=251.47 Aligned_cols=295 Identities=12% Similarity=0.161 Sum_probs=193.5
Q ss_pred CCCCcccEEEecCCcccc------------------CCCCchh-hhcCCcceEEecCCC----CCCccccCcccCCEEec
Q 002863 523 PTSPRLLTLFLNSNYFKN------------------DKVNYHF-FKSMASLRVLKLSHS----DLPCEISNLVSLQYLDL 579 (873)
Q Consensus 523 ~~~~~L~~L~l~~n~l~~------------------~~~~~~~-~~~l~~Lr~L~L~~n----~lp~~i~~L~~L~~L~L 579 (873)
..+++|++|+|++|.++. +| ..+ |.++++|++|+|++| .+|..++++++|++|+|
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP--~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN--EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT--SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCC--hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 567899999999999888 65 332 449999999999998 46889999999999999
Q ss_pred CCCC-CCc--cchhhhcCC-------CCcEeeccccccccccCh-hhhCCCcccceEeccccCCCchhhHHHhcCCCCCc
Q 002863 580 SNSI-PDR--LPLGLKYLV-------NLKCLNLEYTFRLSRISP-QVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLN 648 (873)
Q Consensus 580 ~~~~-i~~--lp~~i~~l~-------~L~~L~L~~~~~l~~l~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 648 (873)
++|. +.. +|..+++++ +|++|++++| .++.+|. ..++++++|++|++++|. +. ..+ .++.+++|+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~-~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNK-VR-HLE-AFGTNVKLT 598 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSC-CC-BCC-CCCTTSEES
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCC-cc-cch-hhcCCCcce
Confidence 9987 774 888887776 9999999999 7888887 349999999999999864 33 444 788899999
Q ss_pred eeEEEEcchhhHHHhhccCCCccCC-cceEEecCCCCCCcccccccccc--ccceEEeecCCCCcceeeccccccccccC
Q 002863 649 VLTITLHSNHALQRLLSSSRFQSIS-IPSLCLRGCRLEPFTIFSLASLR--HLQTLHLVECNDLEDFMIACAGEMKKIRE 725 (873)
Q Consensus 649 ~L~l~~~~~~~l~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 725 (873)
.|+++.+. +..+. .......+ |+.|+|++|.+. ..|..+..++ +|+.|++++| .+.+..+.......
T Consensus 599 ~L~Ls~N~---l~~lp-~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N-~l~g~ip~l~~~l~---- 668 (876)
T 4ecn_A 599 DLKLDYNQ---IEEIP-EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMD---- 668 (876)
T ss_dssp EEECCSSC---CSCCC-TTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS-CTTTTSSSCSSCTT----
T ss_pred EEECcCCc---cccch-HHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC-cCCCccccchhhhc----
Confidence 99995443 33222 22333336 999999999887 5565665554 4889999884 44432222110000
Q ss_pred ccccccccEEEEccccCCCcCc--ccccCCCcEEeeccCccchhhcccCcccc---------cc---------ccccccc
Q 002863 726 IHGFHSLQNVYISHSKLRQVTW--LILAPNLKHLEVQNCPYMEEIINIGKLGE---------VP---------AEVMENL 785 (873)
Q Consensus 726 ~~~l~~L~~L~L~~~~l~~l~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~~~---------~~---------~~~~~~~ 785 (873)
...+++|+.|+|++|.++.+|. +..+++|+.|+|++|.+. .++...+.+. +. ..++..+
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l 747 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGG
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHh
Confidence 0122355555555555555541 224555555555555433 2221100000 00 0112233
Q ss_pred c--cccccceecccCcccccccccCCCCCCCccEEeEcc-------------------CcCcccCcCCCcC
Q 002863 786 T--PFARLEYLILKGLNNLKNICSNALPFPRLKEMSVHE-------------------CSKLRQLALDCNC 835 (873)
Q Consensus 786 ~--~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~l~~-------------------c~~L~~L~l~~n~ 835 (873)
. .+++|+.|+|++ +.+..++.....+++|+.|++++ |++|+.|.+++|.
T Consensus 748 ~~~~l~~L~~L~Ls~-N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 748 RATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp STTTCTTCCEEECCS-SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred hhccCCCcCEEEeCC-CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 3 677888888877 45666766666778888887743 4566666776665
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=5.6e-23 Score=238.84 Aligned_cols=143 Identities=20% Similarity=0.266 Sum_probs=116.9
Q ss_pred ceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecC
Q 002863 505 DVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLS 580 (873)
Q Consensus 505 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~ 580 (873)
..++++++++.++.+|... .++|++|++++|.++.++ +..|.++++|++|+|++|.+ |..|+++++|++|+|+
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELR--MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCC--GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccC--hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 4489999999999988643 389999999999999998 77899999999999999955 6789999999999999
Q ss_pred CCCCCccchhhhcCCCCcEeeccccccccccC-hhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEc
Q 002863 581 NSIPDRLPLGLKYLVNLKCLNLEYTFRLSRIS-PQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLH 655 (873)
Q Consensus 581 ~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 655 (873)
+|.+..+|.. .+++|++|++++| .++.++ +..|+++++|++|+++++. +.......+.++ +|+.|+++.+
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L-~L~~L~L~~n 179 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDLLPVAHL-HLSCILLDLV 179 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB-CCTTTTGGGTTS-CEEEEEEEES
T ss_pred CCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCc-cccCchhhhhhc-eeeEEEeecc
Confidence 9999999987 8999999999999 788876 3569999999999999863 333222333333 2366665543
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=2.2e-23 Score=244.94 Aligned_cols=319 Identities=13% Similarity=0.139 Sum_probs=233.4
Q ss_pred ceEEEEcCCCccc-CC-ccccccceEEEEeeccc-ccc--cccc-------CCCCcccEEEecCCccccCCCCc-hhhhc
Q 002863 484 EKFLVLTGAGLTE-AP-SVGMWKDVTRMSLMDNK-IKR--LTVS-------PTSPRLLTLFLNSNYFKNDKVNY-HFFKS 550 (873)
Q Consensus 484 ~~~~~~~~~~~~~-~~-~~~~~~~l~~l~l~~~~-~~~--l~~~-------~~~~~L~~L~l~~n~l~~~~~~~-~~~~~ 550 (873)
-..+..+++.+.. +| .+..++++++|++++|. +.. +|.. ..+++|++|++++|.++.+| . ..|.+
T Consensus 251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip--~~~~l~~ 328 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP--VETSLQK 328 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC--CHHHHTT
T ss_pred CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccC--chhhhcc
Confidence 5667777665443 34 45678899999999998 764 5543 23489999999999998776 3 37899
Q ss_pred CCcceEEecCCC----CCCccccCcccCCEEecCCCCCCccchhhhcCCC-CcEeeccccccccccChhhhCCCc--ccc
Q 002863 551 MASLRVLKLSHS----DLPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVN-LKCLNLEYTFRLSRISPQVISNLK--MLR 623 (873)
Q Consensus 551 l~~Lr~L~L~~n----~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~~~~l~~l~~~~i~~l~--~L~ 623 (873)
+++|++|++++| .+| .++.+++|++|++++|.+..+|..+..+++ |++|++++| .++.+|.. ++.++ +|+
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~-~~~~~l~~L~ 405 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNI-FDAKSVSVMS 405 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS-CCSSCCSC-CCTTCSSCEE
T ss_pred CCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC-cCcccchh-hhhcccCccC
Confidence 999999999999 457 889999999999999999999999999999 999999999 78888864 66654 899
Q ss_pred eEeccccCCCchhhHHHhc-------CCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccc-
Q 002863 624 VLRMFECGSFLDSLVEELL-------GLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASL- 695 (873)
Q Consensus 624 ~L~l~~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l- 695 (873)
+|++++| .+....+..+. .+++|+.|+++.+.. ..+.........+|+.|++++|.+....+..+...
T Consensus 406 ~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l---~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 406 AIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI---SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp EEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC---CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred EEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCCcc---CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 9999986 44555556666 777899999964443 32222212223479999999999885444344433
Q ss_pred ------cccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcC-cccccCCCcEEeeccCccchhh
Q 002863 696 ------RHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT-WLILAPNLKHLEVQNCPYMEEI 768 (873)
Q Consensus 696 ------~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~~~~~ 768 (873)
++|+.|++++| .++. .|..+. ...+++|+.|+|++|.++.+| .+..+++|+.|+|++|....
T Consensus 482 ~~~~~l~~L~~L~Ls~N-~l~~-lp~~~~-------~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls-- 550 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFN-KLTK-LSDDFR-------ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ-- 550 (636)
T ss_dssp EECTTGGGCCEEECCSS-CCCB-CCGGGS-------TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTT--
T ss_pred ccccccCCccEEECcCC-cCCc-cChhhh-------hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccc--
Confidence 39999999985 4554 333331 026899999999999998886 78889999999997654210
Q ss_pred cccCcccccccccccccccccccceecccCcccccccccCCCCCCCccEEeEccCcCcccCcC
Q 002863 769 INIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSNALPFPRLKEMSVHECSKLRQLAL 831 (873)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~l~~c~~L~~L~l 831 (873)
.....+. ++..+..+++|+.|+|++ +.+..+|... +++|+.|++++|+ +..+++
T Consensus 551 -~N~l~~~----~p~~l~~l~~L~~L~Ls~-N~l~~ip~~~--~~~L~~L~Ls~N~-l~~~~~ 604 (636)
T 4eco_A 551 -GNRTLRE----WPEGITLCPSLTQLQIGS-NDIRKVNEKI--TPNISVLDIKDNP-NISIDL 604 (636)
T ss_dssp -CCBCCCC----CCTTGGGCSSCCEEECCS-SCCCBCCSCC--CTTCCEEECCSCT-TCEEEC
T ss_pred -cCccccc----ChHHHhcCCCCCEEECCC-CcCCccCHhH--hCcCCEEECcCCC-CccccH
Confidence 1111122 233567899999999999 5568887653 3788888888874 445544
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=7.9e-23 Score=229.60 Aligned_cols=316 Identities=16% Similarity=0.165 Sum_probs=218.5
Q ss_pred ceEEEEcCCCcccCCccccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC
Q 002863 484 EKFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD 563 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~ 563 (873)
-..+..++..++..|.+..++++++|++++|.+..++ ...+++|++|++++|.++.++ +..+++|++|++++|.
T Consensus 44 L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-----~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 44 LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-----VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp CCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-----CTTCTTCCEEECCSSC
T ss_pred CCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-----cCCCCcCCEEECCCCc
Confidence 4566777777777787788899999999999999885 778899999999999998875 7899999999999994
Q ss_pred CCc-cccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhc
Q 002863 564 LPC-EISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELL 642 (873)
Q Consensus 564 lp~-~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~ 642 (873)
+.. .++.+++|++|++++|.+..+| ++.+++|++|++++|..+..++ ++.+++|++|++++|. +.. .+ +.
T Consensus 118 l~~l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~-l~~-l~--l~ 188 (457)
T 3bz5_A 118 LTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNK-ITE-LD--VS 188 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSC-CCC-CC--CT
T ss_pred CCeecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCc-cce-ec--cc
Confidence 411 2889999999999999999985 8899999999999996666663 7899999999999863 333 22 78
Q ss_pred CCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecccccccc
Q 002863 643 GLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKK 722 (873)
Q Consensus 643 ~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 722 (873)
.+++|+.|+++.+.... + ......+|+.|++++|.+.+. | +..+++|+.|++++ +.++++.+..+..+..
T Consensus 189 ~l~~L~~L~l~~N~l~~---~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~-N~l~~~~~~~l~~L~~ 258 (457)
T 3bz5_A 189 QNKLLNRLNCDTNNITK---L---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSV-NPLTELDVSTLSKLTT 258 (457)
T ss_dssp TCTTCCEEECCSSCCSC---C---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCS-SCCSCCCCTTCTTCCE
T ss_pred cCCCCCEEECcCCcCCe---e---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeC-CcCCCcCHHHCCCCCE
Confidence 88999999996444332 2 123345899999999999874 3 77889999999998 4566543222211100
Q ss_pred ccCccccccccEEEEccccCCCcCcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcccc
Q 002863 723 IREIHGFHSLQNVYISHSKLRQVTWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNL 802 (873)
Q Consensus 723 ~~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L 802 (873)
+. -...+|+.|++++|.+..--+.+.+++|+.|++++|...+.++... ..+ ..-.+..+++|+.|++++ +++
T Consensus 259 L~--l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~--~~L---~~L~l~~~~~L~~L~L~~-N~l 330 (457)
T 3bz5_A 259 LH--CIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA--AGI---TELDLSQNPKLVYLYLNN-TEL 330 (457)
T ss_dssp EE--CTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTT--CCC---SCCCCTTCTTCCEEECTT-CCC
T ss_pred Ee--ccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCC--Ccc---eEechhhcccCCEEECCC-Ccc
Confidence 00 0112344444554422211124678999999999998776654311 000 001244556666666666 445
Q ss_pred cccccCCCCCCCccEEeEc-----cCcCcccCcCCCc
Q 002863 803 KNICSNALPFPRLKEMSVH-----ECSKLRQLALDCN 834 (873)
Q Consensus 803 ~~l~~~~~~~~~L~~L~l~-----~c~~L~~L~l~~n 834 (873)
+.++ ...+++|+.|+++ +++.|..|+++.|
T Consensus 331 ~~l~--l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n 365 (457)
T 3bz5_A 331 TELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNN 365 (457)
T ss_dssp SCCC--CTTCTTCSEEECCSSCCCBCTTGGGSSGGGT
T ss_pred cccc--cccCCcCcEEECCCCCCCCccccccccccCC
Confidence 5542 3345666666554 2334444444444
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=6.3e-23 Score=236.34 Aligned_cols=139 Identities=22% Similarity=0.279 Sum_probs=115.1
Q ss_pred EEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCCC
Q 002863 507 TRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNS 582 (873)
Q Consensus 507 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~ 582 (873)
+++++++|.+..+|.... ++|++|++++|.++.++ +..|.++++|++|+|++|.+ |..|+++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELW--TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCC--HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccC--hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 579999999999886544 89999999999999988 78899999999999999955 778999999999999999
Q ss_pred CCCccchhhhcCCCCcEeeccccccccccC-hhhhCCCcccceEeccccCCCchhhHHHhcCCCCC--ceeEEEEc
Q 002863 583 IPDRLPLGLKYLVNLKCLNLEYTFRLSRIS-PQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHL--NVLTITLH 655 (873)
Q Consensus 583 ~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~ 655 (873)
.+..+|.. .+++|++|++++| .++.++ |..++++++|++|+++++. +... .+..+++| +.|+++.+
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEEC
T ss_pred ceeecCcc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecc
Confidence 99999987 8999999999999 777643 3459999999999999863 3322 23344444 55555543
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.8e-23 Score=239.99 Aligned_cols=279 Identities=16% Similarity=0.138 Sum_probs=192.9
Q ss_pred CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCCCCCCccchh-hhcCCCC
Q 002863 523 PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNL 597 (873)
Q Consensus 523 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L 597 (873)
..+++++.|++++|.+..+| ..+|.++++|++|+|++|.+ |..|+.+++|++|+|++|.+..+|.. |+++++|
T Consensus 48 l~l~~l~~l~l~~~~l~~lp--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLP--AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGGCCCSEEEESSCEESEEC--THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCceEEEeeCCCCCCcC--HHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 45688999999999999999 88899999999999999955 45899999999999999999998865 7999999
Q ss_pred cEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceE
Q 002863 598 KCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSL 677 (873)
Q Consensus 598 ~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L 677 (873)
++|+|++| .++.+|+..|+++++|++|++++| .+....+..+..+++|+.|+++.+.. ..+. ....++|+.|
T Consensus 126 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~---~~~l~~L~~L 197 (597)
T 3oja_B 126 TVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRL---THVD---LSLIPSLFHA 197 (597)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCC---SBCC---GGGCTTCSEE
T ss_pred CEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCC---CCcC---hhhhhhhhhh
Confidence 99999999 899999987899999999999986 45555666789999999999954432 2221 1122356677
Q ss_pred EecCCCCCCccccccccccccceEEeecCCCCcceeeccccc----------cccccCccccccccEEEEccccCCCc--
Q 002863 678 CLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGE----------MKKIREIHGFHSLQNVYISHSKLRQV-- 745 (873)
Q Consensus 678 ~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~----------~~~~~~~~~l~~L~~L~L~~~~l~~l-- 745 (873)
++++|.+.+ +...++|+.|++++| .++.+....... +..+..+..+++|+.|+|++|.++.+
T Consensus 198 ~l~~n~l~~-----l~~~~~L~~L~ls~n-~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 198 NVSYNLLST-----LAIPIAVEELDASHN-SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp ECCSSCCSE-----EECCTTCSEEECCSS-CCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES
T ss_pred hcccCcccc-----ccCCchhheeeccCC-cccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCH
Confidence 777665543 222344555555542 222211110000 00012234566777777777766654
Q ss_pred CcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcccccccccCCCCCCCccEEeEccCcC
Q 002863 746 TWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSNALPFPRLKEMSVHECSK 825 (873)
Q Consensus 746 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~l~~c~~ 825 (873)
..++.+++|+.|+|++|.+.. ++.....+|+|+.|+|++ +.+..++.....+++|+.|++++|+
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~--------------l~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~~N~- 335 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVA--------------LNLYGQPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHNS- 335 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCE--------------EECSSSCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSSC-
T ss_pred HHhcCccCCCEEECCCCCCCC--------------CCcccccCCCCcEEECCC-CCCCccCcccccCCCCCEEECCCCC-
Confidence 256667777777777765532 112345678888888887 4566666655667788888777652
Q ss_pred cccCcCCC
Q 002863 826 LRQLALDC 833 (873)
Q Consensus 826 L~~L~l~~ 833 (873)
+..++++.
T Consensus 336 l~~~~~~~ 343 (597)
T 3oja_B 336 IVTLKLST 343 (597)
T ss_dssp CCCCCCCT
T ss_pred CCCcChhh
Confidence 44444333
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.8e-23 Score=251.56 Aligned_cols=315 Identities=19% Similarity=0.173 Sum_probs=217.3
Q ss_pred eEEEEcCCCcccC--CccccccceEEEEeeccccccccccCCCCcccEEEecCCccc-cCCCCchhhhcCCcceEEecCC
Q 002863 485 KFLVLTGAGLTEA--PSVGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFK-NDKVNYHFFKSMASLRVLKLSH 561 (873)
Q Consensus 485 ~~~~~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~l~~Lr~L~L~~ 561 (873)
+.+..+++.++.. ..+..++++++|++++|.+....+...+++|++|++++|.++ .++ ..++..+++|++|+|++
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip--~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIP--DFLSGACDTLTGLDLSG 303 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCC--CCSCTTCTTCSEEECCS
T ss_pred CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccC--HHHHhhcCcCCEEECcC
Confidence 3444444444321 123445667777777776654333346777888888888776 444 34444468899999998
Q ss_pred C----CCCccccCcccCCEEecCCCCCC-ccchh-hhcCCCCcEeecccccccc-ccChhhhCCCc-ccceEeccccCCC
Q 002863 562 S----DLPCEISNLVSLQYLDLSNSIPD-RLPLG-LKYLVNLKCLNLEYTFRLS-RISPQVISNLK-MLRVLRMFECGSF 633 (873)
Q Consensus 562 n----~lp~~i~~L~~L~~L~L~~~~i~-~lp~~-i~~l~~L~~L~L~~~~~l~-~l~~~~i~~l~-~L~~L~l~~~~~~ 633 (873)
| .+|..++++++|++|++++|.+. .+|.. +.++++|++|++++| .+. .+|.. +.+++ +|++|++++| .+
T Consensus 304 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n-~l~~~~p~~-l~~l~~~L~~L~Ls~N-~l 380 (768)
T 3rgz_A 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPES-LTNLSASLLTLDLSSN-NF 380 (768)
T ss_dssp SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS-EEEECCCTT-HHHHTTTCSEEECCSS-EE
T ss_pred CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC-ccCccccHH-HHhhhcCCcEEEccCC-Cc
Confidence 8 45888888999999999988776 78876 888999999999988 665 55544 77776 8899988875 33
Q ss_pred chhhHHHhcC--CCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcc
Q 002863 634 LDSLVEELLG--LEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLED 711 (873)
Q Consensus 634 ~~~~~~~l~~--l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 711 (873)
.+..+..+.. +++|+.|+++.+ .+....+.......+|+.|++++|.+.+..|..+..+++|+.|++++| .+++
T Consensus 381 ~~~~~~~~~~~~~~~L~~L~L~~n---~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n-~l~~ 456 (768)
T 3rgz_A 381 SGPILPNLCQNPKNTLQELYLQNN---GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEG 456 (768)
T ss_dssp EEECCTTTTCSTTCCCCEEECCSS---EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCCS
T ss_pred CCCcChhhhhcccCCccEEECCCC---ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC-cccC
Confidence 4444555554 678888888433 233223333333447888888888888888888888888888888874 4554
Q ss_pred eeeccccccccccCccccccccEEEEccccCCC-cC-cccccCCCcEEeeccCccchhhcccCccccccccccccccccc
Q 002863 712 FMIACAGEMKKIREIHGFHSLQNVYISHSKLRQ-VT-WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFA 789 (873)
Q Consensus 712 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (873)
..|..+ ..+++|+.|++++|.++. +| .+..+++|+.|+|++|.....++ ..++.++
T Consensus 457 ~~p~~~---------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-------------~~~~~l~ 514 (768)
T 3rgz_A 457 EIPQEL---------MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-------------KWIGRLE 514 (768)
T ss_dssp CCCGGG---------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-------------GGGGGCT
T ss_pred cCCHHH---------cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC-------------hHHhcCC
Confidence 444444 467888888888887774 33 67788888888888887654332 2566788
Q ss_pred ccceecccCcccccccccCCCCCCCccEEeEccCcCcccCc
Q 002863 790 RLEYLILKGLNNLKNICSNALPFPRLKEMSVHECSKLRQLA 830 (873)
Q Consensus 790 ~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~l~~c~~L~~L~ 830 (873)
+|++|++++|.-...++.....+++|+.|++++|+--..+|
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 88888888865545666666677888888888775443444
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=5e-23 Score=240.30 Aligned_cols=332 Identities=18% Similarity=0.167 Sum_probs=215.4
Q ss_pred ceEEEEcCCCcccCC--ccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEec
Q 002863 484 EKFLVLTGAGLTEAP--SVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKL 559 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L 559 (873)
-..+..+++.++.++ .+..++++++|++++|.+..++. ...+++|++|++++|.++.++ +..|.++++|++|++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLVA 107 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEEC
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccC--HhhhcCccccccccc
Confidence 456777777777654 45678899999999999988765 467899999999999999888 678999999999999
Q ss_pred CCCCC---Cc-cccCcccCCEEecCCCCCCc--cchhhhcCCCCcEeeccccccccccChhhhCCCccc----ceEeccc
Q 002863 560 SHSDL---PC-EISNLVSLQYLDLSNSIPDR--LPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKML----RVLRMFE 629 (873)
Q Consensus 560 ~~n~l---p~-~i~~L~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L----~~L~l~~ 629 (873)
++|.+ |. .++++++|++|++++|.+.. +|..++++++|++|++++| .++.+++..++.+++| ++|++++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCC
Confidence 99944 43 69999999999999998876 7899999999999999999 8888888778888888 8899988
Q ss_pred cCCCchhhHHHhcCCCCCceeEEEEcch--hhHHHhhc--------------------------c--CCCccCCcceEEe
Q 002863 630 CGSFLDSLVEELLGLEHLNVLTITLHSN--HALQRLLS--------------------------S--SRFQSISIPSLCL 679 (873)
Q Consensus 630 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~l~~~~~--------------------------~--~~~~~~~L~~L~L 679 (873)
+. .....+..+..+ +|+.|+++.+.. ..+..... . .......++.+++
T Consensus 187 n~-l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 187 NP-MNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp CC-CCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CC-ceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 63 333344444444 688887764310 00000000 0 0000012233333
Q ss_pred cCC-CCCCccccccccccccceEEeecCCCCcceeecccccc------------ccccCccccccccEEEEccccCCCcC
Q 002863 680 RGC-RLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEM------------KKIREIHGFHSLQNVYISHSKLRQVT 746 (873)
Q Consensus 680 ~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~------------~~~~~~~~l~~L~~L~L~~~~l~~l~ 746 (873)
.++ .+.+..+..+..+++|+.|++++|. ++. .+.++... ..++. ..+++|+.|++++|.+....
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~-l~~~~~~~~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IER-VKDFSYNFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCE-ECS-CCBCCSCCCCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCcc-chh-hhhhhccCCccEEeeccCcccccCc-ccccccCEEeCcCCcccccc
Confidence 333 2233333344444455555554422 221 11111100 00001 24566677777766555443
Q ss_pred cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcccccccccCCCCCCCccEEeEcc----
Q 002863 747 WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSNALPFPRLKEMSVHE---- 822 (873)
Q Consensus 747 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~l~~---- 822 (873)
....+++|+.|++++|...... ..+..+..+++|++|++++ +.+..++.....+++|+.|++.+
T Consensus 342 ~~~~~~~L~~L~l~~n~l~~~~-----------~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~l~~L~~L~l~~n~l~ 409 (570)
T 2z63_A 342 SEVDLPSLEFLDLSRNGLSFKG-----------CCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHSNLK 409 (570)
T ss_dssp CCCBCTTCCEEECCSSCCBEEE-----------EEEHHHHTCSCCCEEECCS-CSEEEEEEEEETCTTCCEEECTTSEEE
T ss_pred ccccCCCCCEEeCcCCccCccc-----------cccccccccCccCEEECCC-CccccccccccccCCCCEEEccCCccc
Confidence 3366777777777777653211 0112456788999999988 45666665566688888888754
Q ss_pred ----------CcCcccCcCCCcC
Q 002863 823 ----------CSKLRQLALDCNC 835 (873)
Q Consensus 823 ----------c~~L~~L~l~~n~ 835 (873)
|++|+.|.++.|.
T Consensus 410 ~~~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 410 QMSEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp SCTTSCTTTTCTTCCEEECTTSC
T ss_pred cccchhhhhcCCCCCEEeCcCCc
Confidence 4566666666664
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=6.8e-23 Score=237.89 Aligned_cols=167 Identities=18% Similarity=0.132 Sum_probs=130.3
Q ss_pred ceEEEEcCCCcccCC--ccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEec
Q 002863 484 EKFLVLTGAGLTEAP--SVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKL 559 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L 559 (873)
-..+..+++.++..+ .+..++++++|++++|.+..+++ ...+++|++|++++|.++.++ +..|.++++|++|+|
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS--SSWFGPLSSLKYLNL 105 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC--HHHHTTCTTCCEEEC
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC--HHHhccCCCCcEEEC
Confidence 456666777666553 35678899999999999988764 477899999999999999988 778999999999999
Q ss_pred CCCCC-----CccccCcccCCEEecCCCC-CCccc-hhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCC
Q 002863 560 SHSDL-----PCEISNLVSLQYLDLSNSI-PDRLP-LGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGS 632 (873)
Q Consensus 560 ~~n~l-----p~~i~~L~~L~~L~L~~~~-i~~lp-~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~ 632 (873)
++|.+ |..++++++|++|++++|. +..+| ..+..+++|++|++++| .++...+..++++++|++|+++++.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~- 183 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLSE- 183 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSB-
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhccccCceEecccCc-
Confidence 99943 5779999999999999886 78887 46999999999999999 7777666668888888888887653
Q ss_pred CchhhHHHhcCCCCCceeEEEE
Q 002863 633 FLDSLVEELLGLEHLNVLTITL 654 (873)
Q Consensus 633 ~~~~~~~~l~~l~~L~~L~l~~ 654 (873)
........+..+++|+.|+++.
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEES
T ss_pred ccccchhhHhhcccccEEEccC
Confidence 1211112234456666666653
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=7.2e-22 Score=235.43 Aligned_cols=332 Identities=16% Similarity=0.112 Sum_probs=204.5
Q ss_pred ceEEEEcCCCcccCCc--cccccceEEEEeecccccccccc--CCCCcccEEEecCCccccCCCCchhhhcCCcceEEec
Q 002863 484 EKFLVLTGAGLTEAPS--VGMWKDVTRMSLMDNKIKRLTVS--PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKL 559 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L 559 (873)
-..+..+++.++.++. +..++++++|++++|.+..+++. ..+++|++|++++|.++.++ ...|.++++|++|+|
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS--DKTFAFCTNLTELHL 104 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC--TTTTTTCTTCSEEEC
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC--hhhhccCCCCCEEEC
Confidence 4456666666665553 45667788888888877766443 46778888888888877777 566778888888888
Q ss_pred CCCC---C-CccccCcccCCEEecCCCCCCccc-hhhhcCCCCcEeeccccccccccChhhhC--CCcccceEeccccCC
Q 002863 560 SHSD---L-PCEISNLVSLQYLDLSNSIPDRLP-LGLKYLVNLKCLNLEYTFRLSRISPQVIS--NLKMLRVLRMFECGS 632 (873)
Q Consensus 560 ~~n~---l-p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~l~~~~i~--~l~~L~~L~l~~~~~ 632 (873)
++|. + |..++++++|++|++++|.+..++ ..++++++|++|++++| .++.+++..++ .+++|++|++++| .
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n-~ 182 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSN-Q 182 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTC-C
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCC-c
Confidence 8773 3 356777888888888877666554 44777888888888877 67777665443 4577788877765 2
Q ss_pred CchhhHHHhcCC---------------------------CCCceeEEEEcchhhHHHhhccCCCc--cCCcceEEecCCC
Q 002863 633 FLDSLVEELLGL---------------------------EHLNVLTITLHSNHALQRLLSSSRFQ--SISIPSLCLRGCR 683 (873)
Q Consensus 633 ~~~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~l~~~~~~~~~~--~~~L~~L~L~~~~ 683 (873)
+....+..+..+ ++|+.|+++. +.+....+..... ..+|+.|++++|.
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~---n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN---SQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT---SCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC---CcccccChhHhhccCcCCCCEEECCCCC
Confidence 222233333333 3445555421 1222221111111 1248889999888
Q ss_pred CCCccccccccccccceEEeecCCCCcceeecccccccc-------------------cc-----CccccccccEEEEcc
Q 002863 684 LEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKK-------------------IR-----EIHGFHSLQNVYISH 739 (873)
Q Consensus 684 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~-------------------~~-----~~~~l~~L~~L~L~~ 739 (873)
+.+..+..+..+++|++|++++| .+++..+..+..+.. ++ .+..+++|++|++++
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred cCccCcccccCcccccEeeCCCC-ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence 88777777888888899988874 455544444432211 11 345678899999999
Q ss_pred ccCCCcC--cccccCCCcEEeeccCccch-hhcccCcc--------------cccccccccccccccccceecccCcccc
Q 002863 740 SKLRQVT--WLILAPNLKHLEVQNCPYME-EIINIGKL--------------GEVPAEVMENLTPFARLEYLILKGLNNL 802 (873)
Q Consensus 740 ~~l~~l~--~l~~l~~L~~L~L~~~~~~~-~~~~~~~~--------------~~~~~~~~~~~~~~~~L~~L~L~~~~~L 802 (873)
|.++.++ .+..+++|++|++++|.... .++...+. ..+....+..+..+++|+.|+++++.--
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 9888764 47788899999998875321 11110000 0011111234556777777777774322
Q ss_pred ccccc-CCCCCCCccEEeEccC
Q 002863 803 KNICS-NALPFPRLKEMSVHEC 823 (873)
Q Consensus 803 ~~l~~-~~~~~~~L~~L~l~~c 823 (873)
..++. ....+++|+.|++++|
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSC
T ss_pred cccCcccccCcccccEEecCCC
Confidence 33332 3345667777776654
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=2.6e-22 Score=237.54 Aligned_cols=141 Identities=21% Similarity=0.171 Sum_probs=103.8
Q ss_pred EEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC
Q 002863 486 FLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD 563 (873)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~ 563 (873)
.+.+++.+++.+|. ..+.++++|++++|.++.++. ...+++|++|+|++|.++.++ +++|.++++|++|+|++|.
T Consensus 35 ~~~c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~--~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC--hhHhcCCCCCCEEEccCCc
Confidence 34456667777775 345678888888888888764 366788888888888888877 6778888888888888884
Q ss_pred C---C-ccccCcccCCEEecCCCCCCccchh-hhcCCCCcEeeccccccccccC-hhhhCCCcccceEecccc
Q 002863 564 L---P-CEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNLEYTFRLSRIS-PQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 564 l---p-~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~-~~~i~~l~~L~~L~l~~~ 630 (873)
| | ..|.++++|++|+|++|.+..+|.. |+++++|++|++++| .++.++ +..++.+++|++|++++|
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc
Confidence 4 3 4577888888888888888887754 778888888888887 565542 344677788888877654
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=9.6e-23 Score=217.64 Aligned_cols=245 Identities=18% Similarity=0.154 Sum_probs=125.6
Q ss_pred cccEEEecCCcccc--CCCCchhhhcCCcceEEecCC-C----CCCccccCcccCCEEecCCCCCC-ccchhhhcCCCCc
Q 002863 527 RLLTLFLNSNYFKN--DKVNYHFFKSMASLRVLKLSH-S----DLPCEISNLVSLQYLDLSNSIPD-RLPLGLKYLVNLK 598 (873)
Q Consensus 527 ~L~~L~l~~n~l~~--~~~~~~~~~~l~~Lr~L~L~~-n----~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~l~~L~ 598 (873)
+++.|++++|.+.. .. +..|.++++|++|+|++ | .+|..++++++|++|+|++|.+. .+|..+.++++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~--~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPI--PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEEC--CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCccc--ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 34444444444443 11 23345555555555552 3 33555555555555555555444 4455555555555
Q ss_pred EeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCC-CCceeEEEEcchhhHHHhhccCCCccCCcceE
Q 002863 599 CLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLE-HLNVLTITLHSNHALQRLLSSSRFQSISIPSL 677 (873)
Q Consensus 599 ~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L 677 (873)
+|++++| .+....+..++++++|++|++++| .+.+..+..+..++ +|+.|+++.+. +....+...... .|+.|
T Consensus 129 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~---l~~~~~~~~~~l-~L~~L 202 (313)
T 1ogq_A 129 TLDFSYN-ALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNR---LTGKIPPTFANL-NLAFV 202 (313)
T ss_dssp EEECCSS-EEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSE---EEEECCGGGGGC-CCSEE
T ss_pred EEeCCCC-ccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCe---eeccCChHHhCC-cccEE
Confidence 5555555 444222223555555555555543 22223333344443 33433332111 111111111111 36677
Q ss_pred EecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCC-CcC-cccccCCCc
Q 002863 678 CLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLR-QVT-WLILAPNLK 755 (873)
Q Consensus 678 ~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~-~l~~l~~L~ 755 (873)
++++|.+.+..+..+..+++|+.|++++| .++...+. +..+++|++|+|++|.++ .+| .+..+++|+
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~----------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGK----------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGGG----------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCC-ceeeecCc----------ccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence 77777766666666777777777777764 33322111 245677777777777666 333 566777777
Q ss_pred EEeeccCccchhhcccCcccccccccccccccccccceecccCcccccc
Q 002863 756 HLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKN 804 (873)
Q Consensus 756 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 804 (873)
+|+|++|.+...++. ...+++|+.|++.+++.+..
T Consensus 272 ~L~Ls~N~l~~~ip~--------------~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 272 SLNVSFNNLCGEIPQ--------------GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEECCSSEEEEECCC--------------STTGGGSCGGGTCSSSEEES
T ss_pred EEECcCCcccccCCC--------------CccccccChHHhcCCCCccC
Confidence 777777766543322 24567777777777655543
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=4e-22 Score=242.43 Aligned_cols=192 Identities=19% Similarity=0.132 Sum_probs=150.2
Q ss_pred EEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC----C-CccccCcccCCEEecCC
Q 002863 507 TRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD----L-PCEISNLVSLQYLDLSN 581 (873)
Q Consensus 507 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~----l-p~~i~~L~~L~~L~L~~ 581 (873)
+..+.+++++..+|. ..++|++|+|++|.++.+. +..|.++++|++|+|++|. + |..|+++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~--~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVT--ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEEC--SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccC--hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 467778888999987 6789999999999999887 6779999999999999992 3 77899999999999999
Q ss_pred CCCCcc-chhhhcCCCCcEeeccccccccc-cC-hhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchh
Q 002863 582 SIPDRL-PLGLKYLVNLKCLNLEYTFRLSR-IS-PQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNH 658 (873)
Q Consensus 582 ~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~-l~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 658 (873)
|.+..+ |..|+++++|++|+|++| .+.. +| ...++++++|++|++++|..........++++++|+.|+++.+...
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 999887 778999999999999999 7775 33 2348999999999999874322223357899999999999755432
Q ss_pred hHHHhhccCCC--ccCCcceEEecCCCCCCccccccccccc------cceEEeecC
Q 002863 659 ALQRLLSSSRF--QSISIPSLCLRGCRLEPFTIFSLASLRH------LQTLHLVEC 706 (873)
Q Consensus 659 ~l~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~l~~l~~------L~~L~l~~~ 706 (873)
. ..+.... ...+|+.|++++|.+.+..+..+..+++ |+.|++++|
T Consensus 162 ~---~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 162 L---VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp C---CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred e---eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 1 1111110 0137889999999887776666655554 888888875
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=7.8e-22 Score=214.90 Aligned_cols=248 Identities=20% Similarity=0.206 Sum_probs=155.9
Q ss_pred EEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCCCCC
Q 002863 509 MSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNSIP 584 (873)
Q Consensus 509 l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~~i 584 (873)
.+.+++.++.+|.. -.++|++|++++|.++.++ ...|.++++|++|+|++|.+ |..++++++|++|+|++|.+
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYIS--NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccC--HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 56677777777653 2358888888888888877 56788888999999988854 55688888899999998888
Q ss_pred Cccchh-hhcCCCCcEeeccccccccccCh-hhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHH
Q 002863 585 DRLPLG-LKYLVNLKCLNLEYTFRLSRISP-QVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQR 662 (873)
Q Consensus 585 ~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 662 (873)
..+|.. +.++++|++|++++| .++.+|. ..++++++|++|++++|.......+..+.++++|+
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-------------- 177 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE-------------- 177 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE--------------
T ss_pred CcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC--------------
Confidence 888876 788889999999888 7888877 56888888888888876333333333444444444
Q ss_pred hhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccC
Q 002863 663 LLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKL 742 (873)
Q Consensus 663 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 742 (873)
.|++++|.+.+..+..+..+++|++|++++|. ++.+....+ ..+++|+.|++++|.+
T Consensus 178 -------------~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~---------~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 178 -------------ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFV---------DVTSSVECLELRDTDL 234 (353)
T ss_dssp -------------EEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHH---------HHTTTEEEEEEESCBC
T ss_pred -------------EEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhh---------hhcccccEEECCCCcc
Confidence 44444555544445555566666666666532 332211111 2355666666666655
Q ss_pred CCcC-----cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCccccccccc
Q 002863 743 RQVT-----WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICS 807 (873)
Q Consensus 743 ~~l~-----~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~ 807 (873)
+.++ .....+.++.++++++.....-.. .++..+..+++|+.|++++ +.++.++.
T Consensus 235 ~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~---------~l~~~l~~l~~L~~L~Ls~-N~l~~i~~ 294 (353)
T 2z80_A 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLF---------QVMKLLNQISGLLELEFSR-NQLKSVPD 294 (353)
T ss_dssp TTCCCC------CCCCCCEEEEESCBCCHHHHH---------HHHHHHHTCTTCCEEECCS-SCCCCCCT
T ss_pred ccccccccccccccchhhccccccccccCcchh---------hhHHHHhcccCCCEEECCC-CCCCccCH
Confidence 5432 122345566666665544321110 0112344566666666666 34555544
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.8e-21 Score=219.53 Aligned_cols=236 Identities=22% Similarity=0.296 Sum_probs=140.7
Q ss_pred EEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC
Q 002863 487 LVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL 564 (873)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l 564 (873)
+.+.+.+++.+|. ...+++++|++++|.+..++. ...+++|++|+|++|.++.++ +..|.++++|++|+|++|.+
T Consensus 59 v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE--VGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC--hhhccCcccCCEEECCCCcC
Confidence 3344444444443 223455555555555554422 234455555555555555444 34455555555555555522
Q ss_pred ---C-ccccCcccCCEEecCCCCCCccch-hhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHH
Q 002863 565 ---P-CEISNLVSLQYLDLSNSIPDRLPL-GLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVE 639 (873)
Q Consensus 565 ---p-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 639 (873)
| ..+.++++|++|+|++|.+..+|. .+.++++|++|++++|..+..+++..|.++++|++|++++|.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-------- 207 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-------- 207 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC--------
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc--------
Confidence 2 224445555555555555555543 345555555555555444555554445555555555555431
Q ss_pred HhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccc
Q 002863 640 ELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGE 719 (873)
Q Consensus 640 ~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 719 (873)
+..+.. .....+|+.|+|++|.+.+..+..+..+++|+.|++++ +.++.+.+..+
T Consensus 208 --------------------l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~-- 262 (452)
T 3zyi_A 208 --------------------IKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN-SQVSLIERNAF-- 262 (452)
T ss_dssp --------------------CSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT-SCCCEECTTTT--
T ss_pred --------------------cccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCC-CcCceECHHHh--
Confidence 111111 11223788999999999888888899999999999998 55665555544
Q ss_pred cccccCccccccccEEEEccccCCCcC--cccccCCCcEEeeccCccc
Q 002863 720 MKKIREIHGFHSLQNVYISHSKLRQVT--WLILAPNLKHLEVQNCPYM 765 (873)
Q Consensus 720 ~~~~~~~~~l~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~~ 765 (873)
..+++|+.|+|++|+++.++ .+..+++|+.|+|++|+..
T Consensus 263 -------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 263 -------DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp -------TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred -------cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 57889999999999998875 4678999999999998753
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=2.7e-21 Score=208.74 Aligned_cols=280 Identities=20% Similarity=0.250 Sum_probs=211.8
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS 562 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n 562 (873)
..+.+++.+++.+|. ..+++++.|++++|.+..++. ...+++|++|++++|.++.+. +..|.++++|++|+|++|
T Consensus 36 ~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH--EKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--GGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCCccccCC-CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC--HhHhhCcCCCCEEECCCC
Confidence 345566667777765 335789999999999998854 478999999999999999887 678999999999999999
Q ss_pred ---CCCccccCcccCCEEecCCCCCCccchh-hhcCCCCcEeeccccccccc--cChhhhCCCcccceEeccccCCCchh
Q 002863 563 ---DLPCEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNLEYTFRLSR--ISPQVISNLKMLRVLRMFECGSFLDS 636 (873)
Q Consensus 563 ---~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~--l~~~~i~~l~~L~~L~l~~~~~~~~~ 636 (873)
.+|..+. ++|++|++++|.+..+|.. +..+++|++|++++| .++. .++..+..+ +|++|+++++. +..
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~- 186 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAK-LTG- 186 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSB-CSS-
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCC-CCc-
Confidence 4576665 8999999999999999875 899999999999999 6753 555667888 99999999863 222
Q ss_pred hHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecc
Q 002863 637 LVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIAC 716 (873)
Q Consensus 637 ~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 716 (873)
.+..+ .++|+.|+++.+ .+............+|+.|++++|.+.+..+..+..+++|+.|++++| .++. .|..
T Consensus 187 l~~~~--~~~L~~L~l~~n---~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~-lp~~ 259 (332)
T 2ft3_A 187 IPKDL--PETLNELHLDHN---KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSR-VPAG 259 (332)
T ss_dssp CCSSS--CSSCSCCBCCSS---CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCB-CCTT
T ss_pred cCccc--cCCCCEEECCCC---cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCee-cChh
Confidence 22222 268889988543 344444333444558999999999999888878999999999999985 5553 3333
Q ss_pred ccccccccCccccccccEEEEccccCCCcC--cccc------cCCCcEEeeccCccchhhcccCcccccccccccccccc
Q 002863 717 AGEMKKIREIHGFHSLQNVYISHSKLRQVT--WLIL------APNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPF 788 (873)
Q Consensus 717 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~--~l~~------l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (873)
+ ..+++|+.|++++|.++.++ .+.. .++|+.|++++|+....-. .+..+..+
T Consensus 260 l---------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~-----------~~~~~~~l 319 (332)
T 2ft3_A 260 L---------PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV-----------QPATFRCV 319 (332)
T ss_dssp G---------GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS-----------CGGGGTTB
T ss_pred h---------hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc-----------Cccccccc
Confidence 3 57899999999999998874 2222 5789999999998642110 11245667
Q ss_pred cccceecccCcc
Q 002863 789 ARLEYLILKGLN 800 (873)
Q Consensus 789 ~~L~~L~L~~~~ 800 (873)
++|+.|+++++.
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 888888887753
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=218.37 Aligned_cols=236 Identities=24% Similarity=0.337 Sum_probs=148.8
Q ss_pred EEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC
Q 002863 487 LVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL 564 (873)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l 564 (873)
+.+.+.+++.+|. ...++++.|++++|.+..++. ...+++|++|+|++|.++.++ ...|.++++|++|+|++|.+
T Consensus 48 v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~--~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 48 VICVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE--IGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp EECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC--GGGGTTCSSCCEEECCSSCC
T ss_pred EEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC--hhhccCCccCCEEECCCCcC
Confidence 3444455555553 233455566666665555432 244555666666666555555 45555566666666665522
Q ss_pred ---C-ccccCcccCCEEecCCCCCCccch-hhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHH
Q 002863 565 ---P-CEISNLVSLQYLDLSNSIPDRLPL-GLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVE 639 (873)
Q Consensus 565 ---p-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 639 (873)
| ..+..+++|++|+|++|.+..+|. .+.++++|++|++++|..+..+++..|.++++|++|++++|.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-------- 196 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-------- 196 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC--------
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc--------
Confidence 2 245555566666666555555554 355556666666655445555555555556666666555542
Q ss_pred HhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccc
Q 002863 640 ELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGE 719 (873)
Q Consensus 640 ~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 719 (873)
+..+.. .....+|+.|+|++|.+.+..+..+..+++|+.|++++ +.++.+.+..+
T Consensus 197 --------------------l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~-- 251 (440)
T 3zyj_A 197 --------------------LREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAF-- 251 (440)
T ss_dssp --------------------CSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTSS--
T ss_pred --------------------Cccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCC-CceeEEChhhh--
Confidence 111111 11223788999999999888888899999999999998 56766555544
Q ss_pred cccccCccccccccEEEEccccCCCcC--cccccCCCcEEeeccCccc
Q 002863 720 MKKIREIHGFHSLQNVYISHSKLRQVT--WLILAPNLKHLEVQNCPYM 765 (873)
Q Consensus 720 ~~~~~~~~~l~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~~ 765 (873)
..+++|+.|+|++|+++.++ .+..+++|+.|+|++|+..
T Consensus 252 -------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 252 -------DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp -------TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred -------cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 57889999999999999876 4678999999999998753
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=6.4e-22 Score=215.59 Aligned_cols=268 Identities=19% Similarity=0.238 Sum_probs=205.7
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS 562 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n 562 (873)
..+..++.+++.+|. ...+++++|++++|.+..++. ...+++|++|++++|.++.++ +..|.++++|++|+|++|
T Consensus 34 ~~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 34 GICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE--EDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp SEEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSS
T ss_pred eEeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC--HhhcCCCCCCCEEECCCC
Confidence 446677788888876 445699999999999998876 478999999999999999887 677999999999999999
Q ss_pred C---CCcc-ccCcccCCEEecCCCCCCccch--hhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchh
Q 002863 563 D---LPCE-ISNLVSLQYLDLSNSIPDRLPL--GLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDS 636 (873)
Q Consensus 563 ~---lp~~-i~~L~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~ 636 (873)
. +|.. ++++++|++|++++|.+..+|. .+..+++|++|++++|..+..+++..++++++|++|++++| .+...
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~ 189 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSY 189 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEE
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCcc
Confidence 4 4554 8899999999999999999997 68999999999999996688888878999999999999986 34555
Q ss_pred hHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCcccccc---ccccccceEEeecCCCCccee
Q 002863 637 LVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSL---ASLRHLQTLHLVECNDLEDFM 713 (873)
Q Consensus 637 ~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~l~~~~ 713 (873)
.+..+..+++|+.|+++.+....+.... .....+|+.|++++|.+.+..+..+ ...+.++.++++++ .+.+..
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~ 265 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHILLLEIF---VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV-KITDES 265 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTTHHHHH---HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-BCCHHH
T ss_pred CHHHHhccccCCeecCCCCccccchhhh---hhhcccccEEECCCCccccccccccccccccchhhccccccc-cccCcc
Confidence 5777888999999999765543333211 1112378899999998776554433 23566778888774 333211
Q ss_pred eccccccccccCccccccccEEEEccccCCCcCc--ccccCCCcEEeeccCccc
Q 002863 714 IACAGEMKKIREIHGFHSLQNVYISHSKLRQVTW--LILAPNLKHLEVQNCPYM 765 (873)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~--l~~l~~L~~L~L~~~~~~ 765 (873)
...+ +..+..+++|+.|++++|+++.+|. +..+++|++|+|++|+..
T Consensus 266 l~~l-----~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 266 LFQV-----MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHH-----HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhhh-----HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 1111 1123567889999999998888763 578889999999888765
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=7.5e-21 Score=205.05 Aligned_cols=280 Identities=18% Similarity=0.196 Sum_probs=211.7
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS 562 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n 562 (873)
..+.+++.+++.+|. ...+.++.|++++|.+..++. ...+++|++|++++|.++.+. +..|..+++|++|++++|
T Consensus 34 ~~l~~~~~~l~~lp~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 34 RVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TEEECTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCCccccCc-cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC--HHHhcCCCCCCEEECCCC
Confidence 345566667777664 334689999999999998875 478999999999999999887 677999999999999999
Q ss_pred ---CCCccccCcccCCEEecCCCCCCccchh-hhcCCCCcEeeccccccccc--cChhhhCCCcccceEeccccCCCchh
Q 002863 563 ---DLPCEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNLEYTFRLSR--ISPQVISNLKMLRVLRMFECGSFLDS 636 (873)
Q Consensus 563 ---~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~--l~~~~i~~l~~L~~L~l~~~~~~~~~ 636 (873)
.+|..+. ++|++|++++|.+..++.. +.++++|++|++++| .+.. ..+..++++++|++|+++++. +. .
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~-~ 185 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTN-IT-T 185 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSC-CC-S
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCc-cc-c
Confidence 4566655 7999999999999998865 899999999999999 6653 555668999999999999863 22 1
Q ss_pred hHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecc
Q 002863 637 LVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIAC 716 (873)
Q Consensus 637 ~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 716 (873)
.+..+ .++|+.|+++ .+.+....+.......+|+.|++++|.+.+..+..+..+++|+.|++++| .++. .|.+
T Consensus 186 l~~~~--~~~L~~L~l~---~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~-lp~~ 258 (330)
T 1xku_A 186 IPQGL--PPSLTELHLD---GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVK-VPGG 258 (330)
T ss_dssp CCSSC--CTTCSEEECT---TSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSS-CCTT
T ss_pred CCccc--cccCCEEECC---CCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCcc-CChh
Confidence 22222 2789999984 33344333333334458999999999998887778999999999999995 4553 3333
Q ss_pred ccccccccCccccccccEEEEccccCCCcCc--cc------ccCCCcEEeeccCccchhhcccCcccccccccccccccc
Q 002863 717 AGEMKKIREIHGFHSLQNVYISHSKLRQVTW--LI------LAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPF 788 (873)
Q Consensus 717 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~--l~------~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (873)
+ ..+++|+.|++++|.++.++. +. ..++|+.|++++|+...... .+..+..+
T Consensus 259 l---------~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i-----------~~~~f~~~ 318 (330)
T 1xku_A 259 L---------ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI-----------QPSTFRCV 318 (330)
T ss_dssp T---------TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS-----------CGGGGTTC
T ss_pred h---------ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccccc-----------Cccccccc
Confidence 3 578999999999999988752 22 35789999999998643211 11245667
Q ss_pred cccceecccCc
Q 002863 789 ARLEYLILKGL 799 (873)
Q Consensus 789 ~~L~~L~L~~~ 799 (873)
++|+.++|+++
T Consensus 319 ~~l~~l~L~~N 329 (330)
T 1xku_A 319 YVRAAVQLGNY 329 (330)
T ss_dssp CCGGGEEC---
T ss_pred cceeEEEeccc
Confidence 78888888763
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=5.3e-22 Score=211.85 Aligned_cols=242 Identities=15% Similarity=0.160 Sum_probs=195.9
Q ss_pred cceEEEEeecccccc---ccc-cCCCCcccEEEecC-CccccCCCCchhhhcCCcceEEecCCCC----CCccccCcccC
Q 002863 504 KDVTRMSLMDNKIKR---LTV-SPTSPRLLTLFLNS-NYFKNDKVNYHFFKSMASLRVLKLSHSD----LPCEISNLVSL 574 (873)
Q Consensus 504 ~~l~~l~l~~~~~~~---l~~-~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~l~~Lr~L~L~~n~----lp~~i~~L~~L 574 (873)
.++++|++++|.+.. ++. ...+++|++|++++ |.+.... +..|.++++|++|+|++|. +|..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI--PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC--CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccC--ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 479999999999874 443 47789999999995 8887655 5668999999999999994 58889999999
Q ss_pred CEEecCCCCCC-ccchhhhcCCCCcEeecccccccc-ccChhhhCCCc-ccceEeccccCCCchhhHHHhcCCCCCceeE
Q 002863 575 QYLDLSNSIPD-RLPLGLKYLVNLKCLNLEYTFRLS-RISPQVISNLK-MLRVLRMFECGSFLDSLVEELLGLEHLNVLT 651 (873)
Q Consensus 575 ~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~-~l~~~~i~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 651 (873)
++|+|++|.+. .+|..+..+++|++|++++| .++ .+|.. +++++ +|++|++++| .+....+..+..++ |+.|+
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEEE
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccEEE
Confidence 99999999887 78999999999999999999 777 55654 88888 9999999986 34555667777776 99999
Q ss_pred EEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCcccccc
Q 002863 652 ITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHS 731 (873)
Q Consensus 652 l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 731 (873)
++.+ .+....+.......+|+.|++++|.+.+..+. +..+++|++|++++ +.+++..|.++ ..+++
T Consensus 204 Ls~N---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~-N~l~~~~p~~l---------~~l~~ 269 (313)
T 1ogq_A 204 LSRN---MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRN-NRIYGTLPQGL---------TQLKF 269 (313)
T ss_dssp CCSS---EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCS-SCCEECCCGGG---------GGCTT
T ss_pred CcCC---cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcC-CcccCcCChHH---------hcCcC
Confidence 8543 33333333344455899999999998877664 77889999999998 45665556555 57899
Q ss_pred ccEEEEccccCC-CcCcccccCCCcEEeeccCccc
Q 002863 732 LQNVYISHSKLR-QVTWLILAPNLKHLEVQNCPYM 765 (873)
Q Consensus 732 L~~L~L~~~~l~-~l~~l~~l~~L~~L~L~~~~~~ 765 (873)
|+.|+|++|.++ .+|....+++|+.|++++|+..
T Consensus 270 L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred CCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 999999999887 5677788999999999999854
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=3e-21 Score=205.81 Aligned_cols=239 Identities=21% Similarity=0.222 Sum_probs=134.0
Q ss_pred EEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC------CccccCcccCCEEecCC
Q 002863 508 RMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL------PCEISNLVSLQYLDLSN 581 (873)
Q Consensus 508 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l------p~~i~~L~~L~~L~L~~ 581 (873)
.++.+++.+..+|.. ..++|++|++++|.++.++ ...|.++++|++|+|++|.+ |..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCC-CCCCCCEEECCCCccCccC--HhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 455555666666542 2357777777777777776 56677777777777777754 34556677777777777
Q ss_pred CCCCccchhhhcCCCCcEeeccccccccccCh-hhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhH
Q 002863 582 SIPDRLPLGLKYLVNLKCLNLEYTFRLSRISP-QVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHAL 660 (873)
Q Consensus 582 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 660 (873)
|.+..+|..+..+++|++|++++| .++.+++ ..+.++++|++|++++|. .....+..+..+++|+.|+++ .+.+
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~---~n~l 162 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMA---GNSF 162 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECT---TCEE
T ss_pred CccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECC---CCcc
Confidence 777777777777777777777777 6666664 457777777777777652 333333334444544444442 1111
Q ss_pred HH-hhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEcc
Q 002863 661 QR-LLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISH 739 (873)
Q Consensus 661 ~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 739 (873)
.. ..+.......+|+.|++++|.+.+..+..+..+++|+.|++++| .++++.+..+ ..+++|+.|++++
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~---------~~l~~L~~L~L~~ 232 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPY---------KCLNSLQVLDYSL 232 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGG---------TTCTTCCEEECTT
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhc---------cCcccCCEeECCC
Confidence 11 11111112224555555555555444445555555555555552 2332222222 3345555555555
Q ss_pred ccCCCcC--cccccC-CCcEEeeccCcc
Q 002863 740 SKLRQVT--WLILAP-NLKHLEVQNCPY 764 (873)
Q Consensus 740 ~~l~~l~--~l~~l~-~L~~L~L~~~~~ 764 (873)
|.++... .+..++ +|++|+|++|+.
T Consensus 233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 233 NHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp SCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 5544431 334442 555555555544
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.3e-20 Score=202.40 Aligned_cols=226 Identities=20% Similarity=0.234 Sum_probs=144.6
Q ss_pred CCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCcccCCEEecCCCCCCccchhhhcCCCCcEe
Q 002863 524 TSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCL 600 (873)
Q Consensus 524 ~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 600 (873)
..++++.|++++|.++.++ .. +.++++|++|+|++| .+|..++++++|++|+|++|.+..+|..++++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~~lp--~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFP--DQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCSSCC--SC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCchhcC--hh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 3567788888888877666 33 455777777777777 45666777777777777777777777777777777777
Q ss_pred eccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEec
Q 002863 601 NLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLR 680 (873)
Q Consensus 601 ~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~ 680 (873)
++++|..+..+|.. ++. ..+.+ .+.+++ +|+.|+++
T Consensus 156 ~L~~n~~~~~~p~~-~~~------~~~~~----------~~~~l~---------------------------~L~~L~L~ 191 (328)
T 4fcg_A 156 SIRACPELTELPEP-LAS------TDASG----------EHQGLV---------------------------NLQSLRLE 191 (328)
T ss_dssp EEEEETTCCCCCSC-SEE------EC-CC----------CEEEST---------------------------TCCEEEEE
T ss_pred ECCCCCCccccChh-Hhh------ccchh----------hhccCC---------------------------CCCEEECc
Confidence 77776444555432 211 10000 011122 45566666
Q ss_pred CCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCC-cC-cccccCCCcEEe
Q 002863 681 GCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQ-VT-WLILAPNLKHLE 758 (873)
Q Consensus 681 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-l~-~l~~l~~L~~L~ 758 (873)
+|.+. ..|..+..+++|++|++++| .++.+ +..+ ..+++|+.|+|++|.+.. +| .++.+++|+.|+
T Consensus 192 ~n~l~-~lp~~l~~l~~L~~L~L~~N-~l~~l-~~~l---------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 192 WTGIR-SLPASIANLQNLKSLKIRNS-PLSAL-GPAI---------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp EECCC-CCCGGGGGCTTCCEEEEESS-CCCCC-CGGG---------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCcC-cchHhhcCCCCCCEEEccCC-CCCcC-chhh---------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 66665 44556777888888888874 44432 2222 567788888888874443 43 567788888888
Q ss_pred eccCccchhhcccCcccccccccccccccccccceecccCcccccccccCCCCCCCccEEeEc
Q 002863 759 VQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSNALPFPRLKEMSVH 821 (873)
Q Consensus 759 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~l~ 821 (873)
|++|.....++. .+..+++|++|+|++|+.+..+|.....+++|+.+.+.
T Consensus 260 L~~n~~~~~~p~-------------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 260 LKDCSNLLTLPL-------------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CTTCTTCCBCCT-------------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCCCchhhcch-------------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 888776644332 45667788888888877777777666566666655544
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.2e-20 Score=202.64 Aligned_cols=216 Identities=21% Similarity=0.270 Sum_probs=162.6
Q ss_pred ccceEEEEeecccccccccc-CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCcccCCEEe
Q 002863 503 WKDVTRMSLMDNKIKRLTVS-PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNLVSLQYLD 578 (873)
Q Consensus 503 ~~~l~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L~~L~ 578 (873)
..+++.|++++|.+..+|.. ..+++|++|++++|.++.+| ..|.++++|++|+|++| .+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP---DTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCC---SCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchh---HHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 35899999999999988764 56899999999999998776 45789999999999999 5699999999999999
Q ss_pred cCC-CCCCccchhhhc---------CCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCc
Q 002863 579 LSN-SIPDRLPLGLKY---------LVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLN 648 (873)
Q Consensus 579 L~~-~~i~~lp~~i~~---------l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 648 (873)
|++ +.+..+|..+.. +++|++|++++| .++.+|.. ++++++|++|++++|. +. ..+..+..++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~N~-l~-~l~~~l~~l~--- 229 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-IANLQNLKSLKIRNSP-LS-ALGPAIHHLP--- 229 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG-GGGCTTCCEEEEESSC-CC-CCCGGGGGCT---
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh-hcCCCCCCEEEccCCC-CC-cCchhhccCC---
Confidence 997 577888887765 899999999998 78888865 8888889998888753 21 1111222222
Q ss_pred eeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccc
Q 002863 649 VLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHG 728 (873)
Q Consensus 649 ~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 728 (873)
+|+.|++++|.+.+..|..+..+++|+.|+|++|+.... .|..+ ..
T Consensus 230 ------------------------~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-~p~~~---------~~ 275 (328)
T 4fcg_A 230 ------------------------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDI---------HR 275 (328)
T ss_dssp ------------------------TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB-CCTTG---------GG
T ss_pred ------------------------CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh-cchhh---------hc
Confidence 566667777777777777777777788888877654442 33333 45
Q ss_pred cccccEEEEccc-cCCCcC-cccccCCCcEEeeccC
Q 002863 729 FHSLQNVYISHS-KLRQVT-WLILAPNLKHLEVQNC 762 (873)
Q Consensus 729 l~~L~~L~L~~~-~l~~l~-~l~~l~~L~~L~L~~~ 762 (873)
+++|+.|+|++| .+..+| .++.+++|+.+.+..+
T Consensus 276 l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 677777777777 344454 6677777777777654
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=1.8e-21 Score=208.27 Aligned_cols=261 Identities=16% Similarity=0.143 Sum_probs=145.4
Q ss_pred eEEEEeecccccccccc--CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC--CccccCcccCCEEecCC
Q 002863 506 VTRMSLMDNKIKRLTVS--PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL--PCEISNLVSLQYLDLSN 581 (873)
Q Consensus 506 l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l--p~~i~~L~~L~~L~L~~ 581 (873)
+...+++.+.+...+.. ..+++|++|++++|.++.++ +..|..+++|++|+|++|.+ ...+..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS--AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCC--HHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCC--HHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcC
Confidence 34444555554433221 44567888888888877776 66777888888888888854 12377778888888888
Q ss_pred CCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHH
Q 002863 582 SIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQ 661 (873)
Q Consensus 582 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 661 (873)
|.+..+|. +++|++|++++| .++.+++. .+++|++|++++|. +....+..+..+++|+.|+++.+ .+.
T Consensus 90 n~l~~l~~----~~~L~~L~l~~n-~l~~~~~~---~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N---~l~ 157 (317)
T 3o53_A 90 NYVQELLV----GPSIETLHAANN-NISRVSCS---RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN---EID 157 (317)
T ss_dssp SEEEEEEE----CTTCCEEECCSS-CCSEEEEC---CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS---CCC
T ss_pred CccccccC----CCCcCEEECCCC-ccCCcCcc---ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCC---CCC
Confidence 77776653 377888888877 67766643 46777888877652 33323333444555555554221 111
Q ss_pred HhhccCC-CccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccc
Q 002863 662 RLLSSSR-FQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHS 740 (873)
Q Consensus 662 ~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 740 (873)
....... ....+|+.|++++|.+.... ....+++|+.|++++ +.++.+.+. + ..+++|+.|++++|
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~-N~l~~l~~~-~---------~~l~~L~~L~L~~N 224 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSS-NKLAFMGPE-F---------QSAAGVTWISLRNN 224 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCS-SCCCEECGG-G---------GGGTTCSEEECTTS
T ss_pred cccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCC-CcCCcchhh-h---------cccCcccEEECcCC
Confidence 1111111 01125666666666554432 122356666666665 334432221 2 34566666666666
Q ss_pred cCCCcC-cccccCCCcEEeeccCccc-hhhcccCcccccccccccccccccccceecccCcccccccc
Q 002863 741 KLRQVT-WLILAPNLKHLEVQNCPYM-EEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNIC 806 (873)
Q Consensus 741 ~l~~l~-~l~~l~~L~~L~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~ 806 (873)
.++.+| .+..+++|+.|++++|+.. ..++ ..+..+++|+.|++.+++.++...
T Consensus 225 ~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~-------------~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGTLR-------------DFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CCCEECTTCCCCTTCCEEECTTCCCBHHHHH-------------HHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred cccchhhHhhcCCCCCEEEccCCCccCcCHH-------------HHHhccccceEEECCCchhccCCc
Confidence 666554 3455666666666666554 2111 133445666666666555555443
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=207.47 Aligned_cols=215 Identities=20% Similarity=0.232 Sum_probs=166.8
Q ss_pred ceEEEEcCCCcccCC--ccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEec
Q 002863 484 EKFLVLTGAGLTEAP--SVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKL 559 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L 559 (873)
-..+..+++.++.++ .+..+++++.|++++|.+..++. ...+++|++|+|++|.++.++ ...|..+++|++|+|
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP--NGAFVYLSKLKELWL 143 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC--TTTSCSCSSCCEEEC
T ss_pred CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC--HhHhhccccCceeeC
Confidence 466777777777654 45677899999999999988764 467899999999999999998 778999999999999
Q ss_pred CCCCC----CccccCcccCCEEecCC-CCCCccch-hhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCC
Q 002863 560 SHSDL----PCEISNLVSLQYLDLSN-SIPDRLPL-GLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSF 633 (873)
Q Consensus 560 ~~n~l----p~~i~~L~~L~~L~L~~-~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~ 633 (873)
++|.+ +..+.++++|++|+|++ +.+..+|. .|.++++|++|++++| .++.+|. +..+++|++|++++| .+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N-~l 219 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN--LTPLIKLDELDLSGN-HL 219 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC--CTTCSSCCEEECTTS-CC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc--cCCCcccCEEECCCC-cc
Confidence 99955 44788999999999997 57888876 5899999999999999 8999985 899999999999986 33
Q ss_pred chhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCccee
Q 002863 634 LDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFM 713 (873)
Q Consensus 634 ~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 713 (873)
....+..+.+++ +|+.|++++|.+....+..+..+++|+.|+|++ |.++.+.
T Consensus 220 ~~~~~~~~~~l~---------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~ 271 (440)
T 3zyj_A 220 SAIRPGSFQGLM---------------------------HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH-NNLTLLP 271 (440)
T ss_dssp CEECTTTTTTCT---------------------------TCCEEECTTCCCCEECTTSSTTCTTCCEEECTT-SCCCCCC
T ss_pred CccChhhhccCc---------------------------cCCEEECCCCceeEEChhhhcCCCCCCEEECCC-CCCCccC
Confidence 433344444444 455566666666666666677777777777777 4455444
Q ss_pred eccccccccccCccccccccEEEEcccc
Q 002863 714 IACAGEMKKIREIHGFHSLQNVYISHSK 741 (873)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 741 (873)
+..+ ..+++|+.|+|++|.
T Consensus 272 ~~~~---------~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 272 HDLF---------TPLHHLERIHLHHNP 290 (440)
T ss_dssp TTTT---------SSCTTCCEEECCSSC
T ss_pred hhHh---------ccccCCCEEEcCCCC
Confidence 3333 456777777777773
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=1.9e-20 Score=199.67 Aligned_cols=243 Identities=22% Similarity=0.230 Sum_probs=196.0
Q ss_pred EEEEcCCCcccCCccccccceEEEEeecccccccccc--CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC-
Q 002863 486 FLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVS--PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS- 562 (873)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n- 562 (873)
.+..++.+++.+|. ..++++++|++++|.+..++.. ..+++|++|++++|.++........+..+++|++|+|++|
T Consensus 11 ~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 45667777887775 4457999999999999998863 6899999999999998755311345678999999999999
Q ss_pred --CCCccccCcccCCEEecCCCCCCccch--hhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCch-hh
Q 002863 563 --DLPCEISNLVSLQYLDLSNSIPDRLPL--GLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLD-SL 637 (873)
Q Consensus 563 --~lp~~i~~L~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~-~~ 637 (873)
.+|..+..+++|++|++++|.+..+|. .+..+++|++|++++| .+...++..++.+++|++|++++|. +.. ..
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~ 167 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNS-FQENFL 167 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCE-EGGGEE
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCc-cccccc
Confidence 458889999999999999999988875 6999999999999999 7888887779999999999999863 332 35
Q ss_pred HHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccc
Q 002863 638 VEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACA 717 (873)
Q Consensus 638 ~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 717 (873)
+..+..+++|+.|+++ .+.+..+.+.......+|+.|++++|.+.+..+..+..+++|+.|++++| .+++..+..+
T Consensus 168 ~~~~~~l~~L~~L~Ls---~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 243 (306)
T 2z66_A 168 PDIFTELRNLTFLDLS---QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQEL 243 (306)
T ss_dssp CSCCTTCTTCCEEECT---TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSC
T ss_pred hhHHhhCcCCCEEECC---CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CCcccCHHHH
Confidence 6678899999999994 44444444444444558999999999998887778889999999999984 5665555444
Q ss_pred cccccccCcccc-ccccEEEEccccCCC
Q 002863 718 GEMKKIREIHGF-HSLQNVYISHSKLRQ 744 (873)
Q Consensus 718 ~~~~~~~~~~~l-~~L~~L~L~~~~l~~ 744 (873)
..+ ++|+.|+|++|.++.
T Consensus 244 ---------~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 244 ---------QHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp ---------CCCCTTCCEEECTTCCEEC
T ss_pred ---------HhhhccCCEEEccCCCeec
Confidence 345 599999999997654
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=3.8e-20 Score=208.64 Aligned_cols=216 Identities=21% Similarity=0.245 Sum_probs=168.0
Q ss_pred ceEEEEcCCCcccCC--ccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEec
Q 002863 484 EKFLVLTGAGLTEAP--SVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKL 559 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L 559 (873)
-..+..+++.++.++ .+..+++++.|++++|.+..++. ...+++|++|+|++|.++.++ ...|..+++|++|+|
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP--SGAFEYLSKLRELWL 154 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC--TTTSSSCTTCCEEEC
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC--hhhhcccCCCCEEEC
Confidence 567777887777653 45678899999999999988764 367899999999999999998 778999999999999
Q ss_pred CCCCC----CccccCcccCCEEecCC-CCCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCC
Q 002863 560 SHSDL----PCEISNLVSLQYLDLSN-SIPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSF 633 (873)
Q Consensus 560 ~~n~l----p~~i~~L~~L~~L~L~~-~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~ 633 (873)
++|.+ +..+.++++|++|++++ +.+..+|.. +..+++|++|++++| .++.+|. +..+++|++|++++| .+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N-~l 230 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN--LTPLVGLEELEMSGN-HF 230 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC--CTTCTTCCEEECTTS-CC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc--ccccccccEEECcCC-cC
Confidence 99955 34788999999999997 688888864 899999999999999 8998875 899999999999986 34
Q ss_pred chhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCccee
Q 002863 634 LDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFM 713 (873)
Q Consensus 634 ~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 713 (873)
....+..+.+++ +|+.|++++|.+....+..+..+++|+.|+|++| .++.+.
T Consensus 231 ~~~~~~~~~~l~---------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 282 (452)
T 3zyi_A 231 PEIRPGSFHGLS---------------------------SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLP 282 (452)
T ss_dssp SEECGGGGTTCT---------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred cccCcccccCcc---------------------------CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccC
Confidence 433444455554 4555666666666666666777777777777773 555444
Q ss_pred eccccccccccCccccccccEEEEccccC
Q 002863 714 IACAGEMKKIREIHGFHSLQNVYISHSKL 742 (873)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 742 (873)
+..+ ..+++|+.|+|++|.+
T Consensus 283 ~~~~---------~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 283 HDLF---------TPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTSS---------TTCTTCCEEECCSSCE
T ss_pred hHHh---------ccccCCCEEEccCCCc
Confidence 3333 4567777777777743
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=1.2e-19 Score=191.07 Aligned_cols=217 Identities=20% Similarity=0.281 Sum_probs=164.4
Q ss_pred EEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCCC
Q 002863 507 TRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNS 582 (873)
Q Consensus 507 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~ 582 (873)
+.++.+++.+..+|.. ..++|+.|++++|.++.++ ...|..+++|++|+|++|.+ |..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVP--AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccC--HHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4566777777777643 3578899999999888887 66788899999999998854 667888899999999988
Q ss_pred C-CCcc-chhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhH
Q 002863 583 I-PDRL-PLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHAL 660 (873)
Q Consensus 583 ~-i~~l-p~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 660 (873)
. +..+ |..+..+++|++|++++| .++.+++..+.++++|++|+++++. +.......+..++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~--------------- 153 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLG--------------- 153 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT---------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCC---------------
Confidence 6 8877 566888999999999988 7888877778889999999988752 2211111122222
Q ss_pred HHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccc
Q 002863 661 QRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHS 740 (873)
Q Consensus 661 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 740 (873)
+|+.|++++|.+....+..+..+++|+.|++++ +.++++.+..+ ..+++|+.|++++|
T Consensus 154 ------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~---------~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 154 ------------NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ-NRVAHVHPHAF---------RDLGRLMTLYLFAN 211 (285)
T ss_dssp ------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTT---------TTCTTCCEEECCSS
T ss_pred ------------CccEEECCCCcccccCHHHhcCccccCEEECCC-CcccccCHhHc---------cCcccccEeeCCCC
Confidence 567777777777766666688888999999988 45665545544 56788999999999
Q ss_pred cCCCcC--cccccCCCcEEeeccCccc
Q 002863 741 KLRQVT--WLILAPNLKHLEVQNCPYM 765 (873)
Q Consensus 741 ~l~~l~--~l~~l~~L~~L~L~~~~~~ 765 (873)
.++.++ .+..+++|+.|+|++|+..
T Consensus 212 ~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 212 NLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCCcCCHHHcccCcccCEEeccCCCcc
Confidence 888876 4778899999999998765
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=3.3e-19 Score=205.93 Aligned_cols=254 Identities=19% Similarity=0.165 Sum_probs=185.1
Q ss_pred ceEEEEcCCCcccCCccccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC
Q 002863 484 EKFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD 563 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~ 563 (873)
...+.+++.+++.+|.. .+++++.|++++|.+..++. .+++|++|++++|.++.++ . .+++|++|+|++|.
T Consensus 42 l~~L~ls~n~L~~lp~~-l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp--~----~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLP--V----LPPGLLELSIFSNP 112 (622)
T ss_dssp CCEEECCSSCCSCCCSC-CCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCC--C----CCTTCCEEEECSCC
T ss_pred CcEEEecCCCcCccChh-hCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCC--C----CCCCCCEEECcCCc
Confidence 45677788888877753 33789999999999988876 6789999999999988887 3 67899999999995
Q ss_pred CCccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcC
Q 002863 564 LPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLG 643 (873)
Q Consensus 564 lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~ 643 (873)
+...-..+++|++|++++|.+..+|.. +++|++|++++| .++.+|. .+++|+.|++++|. +.. .+ ..
T Consensus 113 l~~l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~-l~~-l~---~~ 179 (622)
T 3g06_A 113 LTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQ-LTS-LP---ML 179 (622)
T ss_dssp CCCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSC-CSC-CC---CC
T ss_pred CCCCCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCC-CCC-Cc---cc
Confidence 422222678899999999999988875 488999999998 7888764 35788889888763 222 22 45
Q ss_pred CCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccc
Q 002863 644 LEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKI 723 (873)
Q Consensus 644 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 723 (873)
+++|+.|+++.+. +..+... ..+|+.|++++|.+..... .+++|+.|++++| .++.+.
T Consensus 180 ~~~L~~L~Ls~N~---l~~l~~~----~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N-~L~~lp---------- 237 (622)
T 3g06_A 180 PSGLQELSVSDNQ---LASLPTL----PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGN-RLTSLP---------- 237 (622)
T ss_dssp CTTCCEEECCSSC---CSCCCCC----CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSS-CCSCCC----------
T ss_pred CCCCcEEECCCCC---CCCCCCc----cchhhEEECcCCcccccCC----CCCCCCEEEccCC-ccCcCC----------
Confidence 6788888885443 3322221 1378888888888765432 2478888888874 455321
Q ss_pred cCccccccccEEEEccccCCCcCcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcc
Q 002863 724 REIHGFHSLQNVYISHSKLRQVTWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLN 800 (873)
Q Consensus 724 ~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 800 (873)
..+++|+.|+|++|.++.+|. .+++|+.|+|++|.+. .++ ..+..+++|+.|+|++++
T Consensus 238 ---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~-~lp-------------~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT-RLP-------------ESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC-SCC-------------GGGGGSCTTCEEECCSCC
T ss_pred ---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC-cCC-------------HHHhhccccCEEEecCCC
Confidence 245788888888888888876 6788888888888654 222 246678888888888854
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=3.6e-19 Score=199.60 Aligned_cols=272 Identities=22% Similarity=0.229 Sum_probs=165.8
Q ss_pred ceEEEEcCCCcccCCccccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC
Q 002863 484 EKFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD 563 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~ 563 (873)
-..+..+++.++.+|. .++++++|++++|.+..++... ++|++|++++|.++.++ . |.++++|++|++++|.
T Consensus 93 L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp--~--~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 93 LESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP--E--LQNSSFLKIIDVDNNS 164 (454)
T ss_dssp CSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC--C--CTTCTTCCEEECCSSC
T ss_pred CCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc--c--cCCCCCCCEEECCCCc
Confidence 3445555555555543 2356666666666666554322 56777777777666654 2 6667777777777773
Q ss_pred C---CccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHH
Q 002863 564 L---PCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEE 640 (873)
Q Consensus 564 l---p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 640 (873)
+ |.. ..+|++|++++|.+..+| .++.+++|++|++++| .++.+|.. .++|++|++++|. +. ..+ .
T Consensus 165 l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~-l~-~lp-~ 232 (454)
T 1jl5_A 165 LKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNI-LE-ELP-E 232 (454)
T ss_dssp CSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSC-CS-SCC-C
T ss_pred CcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCc-CC-ccc-c
Confidence 3 332 246777777777666666 4677777777777776 56665542 2467777776652 22 222 3
Q ss_pred hcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecccccc
Q 002863 641 LLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEM 720 (873)
Q Consensus 641 l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 720 (873)
++.+++|+.|+++.+. +..+... ..+|+.|++++|.+.+. |.. +++|+.|++++| .++++.
T Consensus 233 ~~~l~~L~~L~l~~N~---l~~l~~~----~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N-~l~~l~------- 293 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNL---LKTLPDL----PPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSEN-IFSGLS------- 293 (454)
T ss_dssp CTTCTTCCEEECCSSC---CSSCCSC----CTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSS-CCSEES-------
T ss_pred cCCCCCCCEEECCCCc---CCccccc----ccccCEEECCCCccccc-Ccc---cCcCCEEECcCC-ccCccc-------
Confidence 6677777777774332 2222111 13677777777776652 221 366777777763 344311
Q ss_pred ccccCccccccccEEEEccccCCCcCcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcc
Q 002863 721 KKIREIHGFHSLQNVYISHSKLRQVTWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLN 800 (873)
Q Consensus 721 ~~~~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 800 (873)
...++|+.|++++|.++.++.+ .++|+.|++++|.... ++ ..+++|+.|++++ +
T Consensus 294 ------~~~~~L~~L~l~~N~l~~i~~~--~~~L~~L~Ls~N~l~~-lp----------------~~~~~L~~L~L~~-N 347 (454)
T 1jl5_A 294 ------ELPPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIE-LP----------------ALPPRLERLIASF-N 347 (454)
T ss_dssp ------CCCTTCCEEECCSSCCSEECCC--CTTCCEEECCSSCCSC-CC----------------CCCTTCCEEECCS-S
T ss_pred ------CcCCcCCEEECcCCcCCcccCC--cCcCCEEECCCCcccc-cc----------------ccCCcCCEEECCC-C
Confidence 1135788888888877765432 2588888888887542 21 1258999999988 5
Q ss_pred cccccccCCCCCCCccEEeEccC
Q 002863 801 NLKNICSNALPFPRLKEMSVHEC 823 (873)
Q Consensus 801 ~L~~l~~~~~~~~~L~~L~l~~c 823 (873)
.++.++. .+++|+.|+++++
T Consensus 348 ~l~~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 348 HLAEVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp CCSCCCC---CCTTCCEEECCSS
T ss_pred ccccccc---hhhhccEEECCCC
Confidence 6777765 4788999988765
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=2.5e-19 Score=211.94 Aligned_cols=326 Identities=19% Similarity=0.189 Sum_probs=223.9
Q ss_pred ceEEEEcCCCcccCC--ccccccceEEEEeecccccccccc--CCCCcccEEEecCCccccCCCCchhhhcCCcceEEec
Q 002863 484 EKFLVLTGAGLTEAP--SVGMWKDVTRMSLMDNKIKRLTVS--PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKL 559 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L 559 (873)
-+.+..+++.++.++ .+..++++++|++++|.++.++.. ..+++|++|+|++|.++.++ ...|.++++|++|+|
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~--~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLVA 131 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC--GGGGTTCTTCCEEEC
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC--HHHhcCCCCCCEEEC
Confidence 466788888888776 356788999999999999998763 67899999999999999998 788999999999999
Q ss_pred CCCCC---C-ccccCcccCCEEecCCCCCCc--cchhhhcCCCCcEeeccccccccccChhhhCCCcccc----------
Q 002863 560 SHSDL---P-CEISNLVSLQYLDLSNSIPDR--LPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLR---------- 623 (873)
Q Consensus 560 ~~n~l---p-~~i~~L~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~---------- 623 (873)
++|.+ | ..|+++++|++|+|++|.+.. +|..++.+++|++|++++| .++.+++..+..+.+++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhhhhhhhhccc
Confidence 99944 4 468999999999999998875 5678899999999999998 66655543332221111
Q ss_pred --------------------------------------------------------------------------------
Q 002863 624 -------------------------------------------------------------------------------- 623 (873)
Q Consensus 624 -------------------------------------------------------------------------------- 623 (873)
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence
Q ss_pred -----------------------------------------eEeccccC--CCch----------------hhHHHhcCC
Q 002863 624 -----------------------------------------VLRMFECG--SFLD----------------SLVEELLGL 644 (873)
Q Consensus 624 -----------------------------------------~L~l~~~~--~~~~----------------~~~~~l~~l 644 (873)
.|++.++. .... ..+.....+
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 11111000 0000 000000012
Q ss_pred CCCceeEEE--------------------------Ec-------ch---hh----------HHH-hhccCCCccCCcceE
Q 002863 645 EHLNVLTIT--------------------------LH-------SN---HA----------LQR-LLSSSRFQSISIPSL 677 (873)
Q Consensus 645 ~~L~~L~l~--------------------------~~-------~~---~~----------l~~-~~~~~~~~~~~L~~L 677 (873)
++|+.|+++ .+ .. .. ... ..........+++.+
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 223322221 00 00 11 111 111222334478999
Q ss_pred EecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcC--cccccCCCc
Q 002863 678 CLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT--WLILAPNLK 755 (873)
Q Consensus 678 ~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~--~l~~l~~L~ 755 (873)
+++.|.+....+..+..+++|+.|++++|+....+.+..+ ..+++|+.|+|++|+++.++ .+..+++|+
T Consensus 451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~---------~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF---------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC---------TTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccccccccccccccccchhhhhhhhhhcccccccCchhh---------hhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 9999999888888889999999999999766665555555 57899999999999999874 688999999
Q ss_pred EEeeccCccchhhcccCcccccccccccccccccccceecccCcccccccccCC-CCCCCccEEeEccCcCcccCcCCCc
Q 002863 756 HLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSNA-LPFPRLKEMSVHECSKLRQLALDCN 834 (873)
Q Consensus 756 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~-~~~~~L~~L~l~~c~~L~~L~l~~n 834 (873)
+|+|++|.+..-. +..+..+++|++|+|++ +++..++... ..++ ++|+.|.+++|
T Consensus 522 ~L~Ls~N~l~~l~-------------~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~----------~~L~~L~L~~N 577 (635)
T 4g8a_A 522 VLNMSHNNFFSLD-------------TFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFP----------SSLAFLNLTQN 577 (635)
T ss_dssp EEECTTSCCCBCC-------------CGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCC----------TTCCEEECTTC
T ss_pred EEECCCCcCCCCC-------------hhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhh----------CcCCEEEeeCC
Confidence 9999999765321 12567889999999999 6788776543 2331 24555555666
Q ss_pred CCCCcceEEechHHHh
Q 002863 835 CGLERKIIIEAEERWW 850 (873)
Q Consensus 835 ~~l~~l~~~~~~~~~~ 850 (873)
+ -.+.|+..|+
T Consensus 578 p-----~~C~C~~~~~ 588 (635)
T 4g8a_A 578 D-----FACTCEHQSF 588 (635)
T ss_dssp C-----BCCSGGGHHH
T ss_pred C-----CcccCCcHHH
Confidence 5 2345664444
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=5.8e-19 Score=203.93 Aligned_cols=252 Identities=17% Similarity=0.136 Sum_probs=176.3
Q ss_pred ceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC---CccccCcccCCEEecCC
Q 002863 505 DVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL---PCEISNLVSLQYLDLSN 581 (873)
Q Consensus 505 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l---p~~i~~L~~L~~L~L~~ 581 (873)
+++.|++++|.+..+|.... ++|++|++++|.++.++ . .+++|++|+|++|.+ |. .+++|++|+|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp--~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLP--A----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCC--C----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCC--C----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 57788888888887776433 78888888888888777 3 578888888888843 54 678888888888
Q ss_pred CCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHH
Q 002863 582 SIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQ 661 (873)
Q Consensus 582 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 661 (873)
|.+..+|. .+++|++|++++| .++.+|.. +++|++|++++|. +.. .+ ..+.+|+.|+++.+. +.
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~-l~~-l~---~~~~~L~~L~L~~N~---l~ 174 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQ-LAS-LP---ALPSELCKLWAYNNQ---LT 174 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSC-CSC-CC---CCCTTCCEEECCSSC---CS
T ss_pred CcCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCc-CCC-cC---CccCCCCEEECCCCC---CC
Confidence 88888877 5678888888888 77877753 4788888888763 221 11 134677777775433 33
Q ss_pred HhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEcccc
Q 002863 662 RLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSK 741 (873)
Q Consensus 662 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 741 (873)
.+. ....+|+.|++++|.+.+... .+++|+.|++++| .++.+. ..+++|+.|+|++|.
T Consensus 175 ~l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N-~l~~l~-------------~~~~~L~~L~Ls~N~ 232 (622)
T 3g06_A 175 SLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNN-RLTSLP-------------ALPSGLKELIVSGNR 232 (622)
T ss_dssp CCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSSCC-------------CCCTTCCEEECCSSC
T ss_pred CCc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCC-cccccC-------------CCCCCCCEEEccCCc
Confidence 222 112378888888888765332 2467888888874 444321 134678888888888
Q ss_pred CCCcCcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcccccccccCCCCCCCccEEeEc
Q 002863 742 LRQVTWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSNALPFPRLKEMSVH 821 (873)
Q Consensus 742 l~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~l~ 821 (873)
++.+| ..+++|+.|+|++|.+. .+ | . .+++|+.|+|++ +.++.+|.....+++|+.|+++
T Consensus 233 L~~lp--~~l~~L~~L~Ls~N~L~-~l---------p----~---~~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 233 LTSLP--VLPSELKELMVSGNRLT-SL---------P----M---LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp CSCCC--CCCTTCCEEECCSSCCS-CC---------C----C---CCTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECC
T ss_pred cCcCC--CCCCcCcEEECCCCCCC-cC---------C----c---ccccCcEEeCCC-CCCCcCCHHHhhccccCEEEec
Confidence 88877 55688888888888654 11 1 1 467888888888 4677777766778888888887
Q ss_pred cCc
Q 002863 822 ECS 824 (873)
Q Consensus 822 ~c~ 824 (873)
+++
T Consensus 293 ~N~ 295 (622)
T 3g06_A 293 GNP 295 (622)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=1.2e-19 Score=191.20 Aligned_cols=218 Identities=22% Similarity=0.236 Sum_probs=176.1
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS 562 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n 562 (873)
..+..++.+++.+|. ..++++++|++++|.+..++. ...+++|++|++++|.++.+. +..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID--AAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC--HhhcCCccCCCEEeCCCC
Confidence 345567777877774 456799999999999998874 477899999999999998887 677999999999999999
Q ss_pred C-C----CccccCcccCCEEecCCCCCCccc-hhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchh
Q 002863 563 D-L----PCEISNLVSLQYLDLSNSIPDRLP-LGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDS 636 (873)
Q Consensus 563 ~-l----p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~ 636 (873)
. + |..+..+++|++|++++|.+..++ ..+.++++|++|++++| .++.+++..++++++|++|++++|. +...
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~ 168 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNR-ISSV 168 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCEE
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCc-cccc
Confidence 4 3 677899999999999999998884 56899999999999999 8999998889999999999999863 2221
Q ss_pred hHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecc
Q 002863 637 LVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIAC 716 (873)
Q Consensus 637 ~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 716 (873)
....+..+ .+|+.|++++|.+.+..+..+..+++|+.|++++ +.++++.+..
T Consensus 169 ~~~~~~~l---------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~ 220 (285)
T 1ozn_A 169 PERAFRGL---------------------------HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEA 220 (285)
T ss_dssp CTTTTTTC---------------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCHHH
T ss_pred CHHHhcCc---------------------------cccCEEECCCCcccccCHhHccCcccccEeeCCC-CcCCcCCHHH
Confidence 11112222 2677888888888887788888999999999998 4566554444
Q ss_pred ccccccccCccccccccEEEEccccCCC
Q 002863 717 AGEMKKIREIHGFHSLQNVYISHSKLRQ 744 (873)
Q Consensus 717 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~ 744 (873)
+ ..+++|+.|++++|.+..
T Consensus 221 ~---------~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 221 L---------APLRALQYLRLNDNPWVC 239 (285)
T ss_dssp H---------TTCTTCCEEECCSSCEEC
T ss_pred c---------ccCcccCEEeccCCCccC
Confidence 4 568899999999996654
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=9.7e-21 Score=202.14 Aligned_cols=243 Identities=16% Similarity=0.117 Sum_probs=151.4
Q ss_pred cceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhh-------cCCcceEEecCCCC----CCccc--cC
Q 002863 504 KDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFK-------SMASLRVLKLSHSD----LPCEI--SN 570 (873)
Q Consensus 504 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-------~l~~Lr~L~L~~n~----lp~~i--~~ 570 (873)
++++.+++++|.+ .+|... ...|+.|++++|.+..... +..+. ++++|++|+|++|. +|..+ +.
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~-~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQF-TDIIKSLSLKRLTVRAARI-PSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHH-HHHHHHCCCCEEEEEEEEC-BHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHH-HHHHhhcccccccccCCCc-CHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 3566677777777 554421 1238889999998865432 23333 68999999999994 46665 88
Q ss_pred cccCCEEecCCCCCCccchhhhcC-----CCCcEeeccccccccccChhhhCCCcccceEeccccCCCchh--hHHHh--
Q 002863 571 LVSLQYLDLSNSIPDRLPLGLKYL-----VNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDS--LVEEL-- 641 (873)
Q Consensus 571 L~~L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~--~~~~l-- 641 (873)
+++|++|+|++|.+..+|..+..+ ++|++|++++| .+..+++..++++++|++|++++|. ..+. .+..+
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNP-ELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCT-TCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCC-cCcchHHHHHHHh
Confidence 999999999999998888888877 89999999999 8888887779999999999999864 2222 33444
Q ss_pred cCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccc-cccccccccceEEeecCCCCcceeecccccc
Q 002863 642 LGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTI-FSLASLRHLQTLHLVECNDLEDFMIACAGEM 720 (873)
Q Consensus 642 ~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 720 (873)
..+++|+.|+++.+....+..+.........+|+.|++++|.+.+..| ..+..+++|+.|++++| .++. .|..+
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~--- 272 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQ-VPKGL--- 272 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSS-CCSSC---
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccCh-hhhhc---
Confidence 566666666664333222112111111111255566666665554432 23344555666666553 2332 12111
Q ss_pred ccccCccccccccEEEEccccCCCcCcccccCCCcEEeeccCcc
Q 002863 721 KKIREIHGFHSLQNVYISHSKLRQVTWLILAPNLKHLEVQNCPY 764 (873)
Q Consensus 721 ~~~~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~ 764 (873)
. ++|+.|+|++|+++.+|.+..+++|++|+|++|++
T Consensus 273 ------~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 273 ------P--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp ------C--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTT
T ss_pred ------c--CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCC
Confidence 1 45556666666555555555555555565555543
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=1.2e-18 Score=195.42 Aligned_cols=256 Identities=20% Similarity=0.195 Sum_probs=180.9
Q ss_pred ceEEEEcCCCcccCCccccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC-
Q 002863 484 EKFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS- 562 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n- 562 (873)
-..+..+++.++.++.. .+++++|++++|.+..+|....+++|++|++++|.++.++ . ...+|++|++++|
T Consensus 113 L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp--~----~~~~L~~L~L~~n~ 184 (454)
T 1jl5_A 113 LKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP--D----LPPSLEFIAAGNNQ 184 (454)
T ss_dssp CCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCC--C----CCTTCCEEECCSSC
T ss_pred CcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccC--C----CcccccEEECcCCc
Confidence 45666677666665532 3689999999999998887788899999999999988876 2 2358999999999
Q ss_pred --CCCccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHH
Q 002863 563 --DLPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEE 640 (873)
Q Consensus 563 --~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 640 (873)
.+| .++++++|++|++++|.+..+|... ++|++|++++| .++.+|. ++.+++|++|++++|. +.. .+.
T Consensus 185 l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~-l~~-l~~- 254 (454)
T 1jl5_A 185 LEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNL-LKT-LPD- 254 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSC-CSS-CCS-
T ss_pred CCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCc-CCc-ccc-
Confidence 446 6889999999999999988887643 58999999999 7888884 8899999999998863 222 111
Q ss_pred hcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecccccc
Q 002863 641 LLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEM 720 (873)
Q Consensus 641 l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 720 (873)
.+++|+.|+++.+. +..+... ..+|+.|++++|.+.+... + .++|+.|++++| .++++.
T Consensus 255 --~~~~L~~L~l~~N~---l~~l~~~----~~~L~~L~ls~N~l~~l~~--~--~~~L~~L~l~~N-~l~~i~------- 313 (454)
T 1jl5_A 255 --LPPSLEALNVRDNY---LTDLPEL----PQSLTFLDVSENIFSGLSE--L--PPNLYYLNASSN-EIRSLC------- 313 (454)
T ss_dssp --CCTTCCEEECCSSC---CSCCCCC----CTTCCEEECCSSCCSEESC--C--CTTCCEEECCSS-CCSEEC-------
T ss_pred --cccccCEEECCCCc---ccccCcc----cCcCCEEECcCCccCcccC--c--CCcCCEEECcCC-cCCccc-------
Confidence 24788888885443 3332221 1378999999998765321 1 267888888874 444321
Q ss_pred ccccCccccccccEEEEccccCCCcCcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcc
Q 002863 721 KKIREIHGFHSLQNVYISHSKLRQVTWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLN 800 (873)
Q Consensus 721 ~~~~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 800 (873)
...++|+.|++++|+++.+|.. +++|+.|++++|... .+ | . .+++|++|++++ +
T Consensus 314 ------~~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~L~~N~l~-~l---------p----~---~l~~L~~L~L~~-N 367 (454)
T 1jl5_A 314 ------DLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLA-EV---------P----E---LPQNLKQLHVEY-N 367 (454)
T ss_dssp ------CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCS-CC---------C----C---CCTTCCEEECCS-S
T ss_pred ------CCcCcCCEEECCCCcccccccc--CCcCCEEECCCCccc-cc---------c----c---hhhhccEEECCC-C
Confidence 1124778888888877776543 577888888777653 11 1 1 356788888877 4
Q ss_pred cccc
Q 002863 801 NLKN 804 (873)
Q Consensus 801 ~L~~ 804 (873)
.+..
T Consensus 368 ~l~~ 371 (454)
T 1jl5_A 368 PLRE 371 (454)
T ss_dssp CCSS
T ss_pred CCCc
Confidence 4444
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=1.9e-19 Score=192.63 Aligned_cols=266 Identities=16% Similarity=0.101 Sum_probs=189.2
Q ss_pred cccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCCCCCCccchhhhcCCCCcEeec
Q 002863 527 RLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNL 602 (873)
Q Consensus 527 ~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 602 (873)
.++.++++.+.+...+ ...+..+++|++|+|++|.+ |..++++++|++|+|++|.+..++. +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQAL--ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHH--HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhH--HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEEC
Confidence 4566677777776666 67788889999999999954 4678999999999999999988776 999999999999
Q ss_pred cccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCC
Q 002863 603 EYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGC 682 (873)
Q Consensus 603 ~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~ 682 (873)
++| .++.+++ +++|++|++++|. +.... ...+++|+.|+++.+ .+..+.+.......+|+.|++++|
T Consensus 88 s~n-~l~~l~~-----~~~L~~L~l~~n~-l~~~~---~~~~~~L~~L~l~~N---~l~~~~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 88 NNN-YVQELLV-----GPSIETLHAANNN-ISRVS---CSRGQGKKNIYLANN---KITMLRDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp CSS-EEEEEEE-----CTTCCEEECCSSC-CSEEE---ECCCSSCEEEECCSS---CCCSGGGBCTGGGSSEEEEECTTS
T ss_pred cCC-ccccccC-----CCCcCEEECCCCc-cCCcC---ccccCCCCEEECCCC---CCCCccchhhhccCCCCEEECCCC
Confidence 999 7887664 3899999999863 32222 234677888888433 334443333334457888888888
Q ss_pred CCCCcccccc-ccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcC-cccccCCCcEEeec
Q 002863 683 RLEPFTIFSL-ASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT-WLILAPNLKHLEVQ 760 (873)
Q Consensus 683 ~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~ 760 (873)
.+.+..+..+ ..+++|+.|++++| .++.+ +.. ..+++|+.|+|++|.++.++ .+..+++|+.|+|+
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~----------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYN-FIYDV-KGQ----------VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE-ECC----------CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred CCCcccHHHHhhccCcCCEEECCCC-cCccc-ccc----------cccccCCEEECCCCcCCcchhhhcccCcccEEECc
Confidence 8877666555 36788888888874 45543 111 34778888888888888774 57778888888888
Q ss_pred cCccchhhcccCcccccccccccccccccccceecccCcccc-cccccCCCCCCCccEEeEccCcCcccCcCCCc
Q 002863 761 NCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNL-KNICSNALPFPRLKEMSVHECSKLRQLALDCN 834 (873)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L-~~l~~~~~~~~~L~~L~l~~c~~L~~L~l~~n 834 (873)
+|.+. .+ +..+..+++|+.|++++++-. ..++.....+++|+.+.+.+|+.++..+....
T Consensus 223 ~N~l~-~l-------------~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 223 NNKLV-LI-------------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp TSCCC-EE-------------CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred CCccc-ch-------------hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc
Confidence 88664 22 224566788888888885433 23333444567777777777777776554443
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.3e-19 Score=205.25 Aligned_cols=215 Identities=17% Similarity=0.156 Sum_probs=117.5
Q ss_pred CCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC--CccccCcccCCEEecCCCCCCccchhhhcCCCCcEee
Q 002863 524 TSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL--PCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLN 601 (873)
Q Consensus 524 ~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l--p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 601 (873)
.+++|++|+|++|.++.++ +..|..+++|++|+|++|.+ ...++.+++|++|+|++|.+..+|.. ++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQIS--AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCC--GGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCC--HHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 3457777777777777766 56677777777777777744 11267777777777777777666532 6777777
Q ss_pred ccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCC-ccCCcceEEec
Q 002863 602 LEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRF-QSISIPSLCLR 680 (873)
Q Consensus 602 L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~-~~~~L~~L~L~ 680 (873)
+++| .++.+++. .+++|++|++++|. +....+..++.+++|+.|+++. +.+....+.... ...+|+.|+|+
T Consensus 106 L~~N-~l~~~~~~---~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~---N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 106 AANN-NISRVSCS---RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKL---NEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CCSS-CCCCEEEC---CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTT---SCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CcCC-cCCCCCcc---ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCC---CCCCCcChHHHhhhCCcccEEecC
Confidence 7777 66666543 45677777777642 3333333344444444444421 111111111111 11245555555
Q ss_pred CCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcC-cccccCCCcEEee
Q 002863 681 GCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT-WLILAPNLKHLEV 759 (873)
Q Consensus 681 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L 759 (873)
+|.+.+..+ ...+++|+.|+|++ |.++++.+. + ..+++|+.|+|++|.++.+| .+..+++|+.|++
T Consensus 178 ~N~l~~~~~--~~~l~~L~~L~Ls~-N~l~~~~~~-~---------~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 178 YNFIYDVKG--QVVFAKLKTLDLSS-NKLAFMGPE-F---------QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244 (487)
T ss_dssp TSCCCEEEC--CCCCTTCCEEECCS-SCCCEECGG-G---------GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred CCccccccc--cccCCCCCEEECCC-CCCCCCCHh-H---------cCCCCccEEEecCCcCcccchhhccCCCCCEEEc
Confidence 555544422 22355666666655 334432221 2 34555666666666555554 3455566666666
Q ss_pred ccCccc
Q 002863 760 QNCPYM 765 (873)
Q Consensus 760 ~~~~~~ 765 (873)
++|+..
T Consensus 245 ~~N~l~ 250 (487)
T 3oja_A 245 RGNGFH 250 (487)
T ss_dssp TTCCBC
T ss_pred CCCCCc
Confidence 665544
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=4.6e-18 Score=178.13 Aligned_cols=198 Identities=20% Similarity=0.180 Sum_probs=131.6
Q ss_pred CcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCCCCCCccc-hhhhcCCCCcEe
Q 002863 526 PRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNSIPDRLP-LGLKYLVNLKCL 600 (873)
Q Consensus 526 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L 600 (873)
++|++|++++|.++.++ ...|.++++|++|++++|.+ +..+.++++|++|+|++|.+..++ ..+.++++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEEC--TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccC--HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 46777777777777766 45677777777777777744 345677777777777777777766 447777778888
Q ss_pred eccccccccccChhhhCCCcccceEeccccCCCch-hhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEe
Q 002863 601 NLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLD-SLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCL 679 (873)
Q Consensus 601 ~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L 679 (873)
++++| .+..+++..++++++|++|+++++. +.. ..+..+..++ +|+.|++
T Consensus 106 ~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~---------------------------~L~~L~L 156 (276)
T 2z62_A 106 VAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLT---------------------------NLEHLDL 156 (276)
T ss_dssp ECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCT---------------------------TCCEEEC
T ss_pred ECCCC-CccccCchhcccCCCCCEEECcCCc-cceecCchhhccCC---------------------------CCCEEEC
Confidence 87777 6777766557777777777777652 111 1122222222 4556666
Q ss_pred cCCCCCCccccccccccccc----eEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcC--cccccCC
Q 002863 680 RGCRLEPFTIFSLASLRHLQ----TLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT--WLILAPN 753 (873)
Q Consensus 680 ~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~--~l~~l~~ 753 (873)
++|.+.+..+..+..+++|+ .|++++ +.++.+.+..+ ...+|+.|++++|.++.++ .+..+++
T Consensus 157 s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~----------~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAF----------KEIRLKELALDTNQLKSVPDGIFDRLTS 225 (276)
T ss_dssp CSSCCCEECGGGGHHHHTCTTCCEEEECCS-SCCCEECTTSS----------CSCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred CCCCCCcCCHHHhhhhhhccccceeeecCC-CcccccCcccc----------CCCcccEEECCCCceeecCHhHhccccc
Confidence 66666665555566666665 778877 45554433332 2347888888888888875 3577888
Q ss_pred CcEEeeccCccc
Q 002863 754 LKHLEVQNCPYM 765 (873)
Q Consensus 754 L~~L~L~~~~~~ 765 (873)
|+.|+|++|+..
T Consensus 226 L~~L~l~~N~~~ 237 (276)
T 2z62_A 226 LQKIWLHTNPWD 237 (276)
T ss_dssp CCEEECCSSCBC
T ss_pred ccEEEccCCccc
Confidence 889998888754
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=2.2e-19 Score=203.36 Aligned_cols=255 Identities=18% Similarity=0.163 Sum_probs=155.5
Q ss_pred cceEEEEeeccccccccc---cCCCCcccEEEecCCccccCC--CCchhhhcCCcceEEecCCCCCCc----cc-cCcc-
Q 002863 504 KDVTRMSLMDNKIKRLTV---SPTSPRLLTLFLNSNYFKNDK--VNYHFFKSMASLRVLKLSHSDLPC----EI-SNLV- 572 (873)
Q Consensus 504 ~~l~~l~l~~~~~~~l~~---~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~l~~Lr~L~L~~n~lp~----~i-~~L~- 572 (873)
+++++|++++|.+...+. ...+++|++|++++|.++... .....+..+++|++|+|++|.+.+ .+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 467888888887765332 256778888888888875321 012456778888888888886522 22 2344
Q ss_pred ---cCCEEecCCCCCC-----ccchhhhcCCCCcEeeccccccccccChhh-----hCCCcccceEeccccCCCch----
Q 002863 573 ---SLQYLDLSNSIPD-----RLPLGLKYLVNLKCLNLEYTFRLSRISPQV-----ISNLKMLRVLRMFECGSFLD---- 635 (873)
Q Consensus 573 ---~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~-----i~~l~~L~~L~l~~~~~~~~---- 635 (873)
+|++|+|++|.+. .+|..+..+++|++|++++| .++...... ....++|++|++++|. +..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~ 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCE 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHH
Confidence 6888888888777 45777888888888888888 555432222 2335678888888763 333
Q ss_pred hhHHHhcCCCCCceeEEEEcchhh--HHHhhccCCCccCCcceEEecCCCCCCc----cccccccccccceEEeecCCCC
Q 002863 636 SLVEELLGLEHLNVLTITLHSNHA--LQRLLSSSRFQSISIPSLCLRGCRLEPF----TIFSLASLRHLQTLHLVECNDL 709 (873)
Q Consensus 636 ~~~~~l~~l~~L~~L~l~~~~~~~--l~~~~~~~~~~~~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l 709 (873)
..+..+..+++|+.|+++.+.... ...+.........+|+.|++++|.+... .+..+..+++|++|++++| .+
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l 239 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KL 239 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BC
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cC
Confidence 234556677888888886544322 1111111111122688888888877664 3445667788888888875 44
Q ss_pred cceeeccccccccccCccccccccEEEEccccCCC-----cC-cccccCCCcEEeeccCccc
Q 002863 710 EDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQ-----VT-WLILAPNLKHLEVQNCPYM 765 (873)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----l~-~l~~l~~L~~L~L~~~~~~ 765 (873)
++.....+.. .....+++|++|++++|.++. ++ .+..+++|++|+|++|.+.
T Consensus 240 ~~~~~~~l~~----~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 240 GDVGMAELCP----GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHHHH----HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred ChHHHHHHHH----HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 4322111100 000235677777777776665 22 3445677777777776543
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.3e-18 Score=197.03 Aligned_cols=232 Identities=17% Similarity=0.121 Sum_probs=152.8
Q ss_pred cCCcceEEecCCCCC----CccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceE
Q 002863 550 SMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVL 625 (873)
Q Consensus 550 ~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L 625 (873)
.+++|++|+|++|.+ |..|+++++|++|+|++|.+..++. +..+++|++|+|++| .++.+|+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC-----CCCcCEE
Confidence 445899999999944 5688999999999999999887765 999999999999999 7887765 2899999
Q ss_pred eccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccc-cccccceEEee
Q 002863 626 RMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLA-SLRHLQTLHLV 704 (873)
Q Consensus 626 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~l~ 704 (873)
++++|. +....+ ..+++|+.|+++. +.+..+.+.......+|+.|+|++|.+.+..|..+. .+++|+.|+|+
T Consensus 105 ~L~~N~-l~~~~~---~~l~~L~~L~L~~---N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 105 HAANNN-ISRVSC---SRGQGKKNIYLAN---NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp ECCSSC-CCCEEE---CCCSSCEEEECCS---SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred ECcCCc-CCCCCc---cccCCCCEEECCC---CCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 999863 322221 2456677777743 333333333333344677777777777766665554 57777777777
Q ss_pred cCCCCcceeeccccccccccCccccccccEEEEccccCCCcC-cccccCCCcEEeeccCccchhhcccCccccccccccc
Q 002863 705 ECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT-WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVME 783 (873)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 783 (873)
+| .++++ +. ...+++|+.|+|++|.++.++ .+..+++|+.|+|++|.+.. + +.
T Consensus 178 ~N-~l~~~-~~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-l-------------p~ 231 (487)
T 3oja_A 178 YN-FIYDV-KG----------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-I-------------EK 231 (487)
T ss_dssp TS-CCCEE-EC----------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-E-------------CT
T ss_pred CC-ccccc-cc----------cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-c-------------ch
Confidence 73 34433 11 124677777777777777663 56667777777777776542 1 12
Q ss_pred ccccccccceecccCcccc-cccccCCCCCCCccEEeEc
Q 002863 784 NLTPFARLEYLILKGLNNL-KNICSNALPFPRLKEMSVH 821 (873)
Q Consensus 784 ~~~~~~~L~~L~L~~~~~L-~~l~~~~~~~~~L~~L~l~ 821 (873)
.+..+++|+.|++++++-. ..++.....++.|+.+.+.
T Consensus 232 ~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 3556677777777774433 1333333345555555544
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=1.2e-17 Score=175.65 Aligned_cols=124 Identities=20% Similarity=0.202 Sum_probs=101.7
Q ss_pred cccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC---CccccCcccCCEEe
Q 002863 502 MWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL---PCEISNLVSLQYLD 578 (873)
Q Consensus 502 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l---p~~i~~L~~L~~L~ 578 (873)
.+++++.++++++.+..+|... .+.++.|++++|.++.++ ...|..+++|++|+|++|.+ +. .+.+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFS--LATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEE--GGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEE
T ss_pred ccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccC--HHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEEE
Confidence 3457888888888888887543 378899999999888887 67788899999999999855 33 37788899999
Q ss_pred cCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEecccc
Q 002863 579 LSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 579 L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
|++|.+..+|..+..+++|++|++++| .++.+|+..|.++++|++|++++|
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC
Confidence 999888888888888899999999888 788888777888888888888775
No 73
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=3.5e-19 Score=201.80 Aligned_cols=304 Identities=17% Similarity=0.198 Sum_probs=203.4
Q ss_pred ccceEEEEeeccccccccc--c-CCCC----cccEEEecCCccccCC--CCchhhhcCCcceEEecCCCCCC----ccc-
Q 002863 503 WKDVTRMSLMDNKIKRLTV--S-PTSP----RLLTLFLNSNYFKNDK--VNYHFFKSMASLRVLKLSHSDLP----CEI- 568 (873)
Q Consensus 503 ~~~l~~l~l~~~~~~~l~~--~-~~~~----~L~~L~l~~n~l~~~~--~~~~~~~~l~~Lr~L~L~~n~lp----~~i- 568 (873)
.+++++|++++|.+..... . ..++ +|++|++++|.++... .....+..+++|++|+|++|.+. ..+
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 134 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC 134 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHH
Confidence 4688999999988765211 1 2233 7999999999876421 11456788999999999999662 222
Q ss_pred ----cCcccCCEEecCCCCCCc-----cchhhhcCCCCcEeeccccccccccChhhhC-----CCcccceEeccccCCCc
Q 002863 569 ----SNLVSLQYLDLSNSIPDR-----LPLGLKYLVNLKCLNLEYTFRLSRISPQVIS-----NLKMLRVLRMFECGSFL 634 (873)
Q Consensus 569 ----~~L~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~-----~l~~L~~L~l~~~~~~~ 634 (873)
..+++|++|++++|.+.. ++..+..+++|++|++++| .+.......+. .+++|++|++++|. +.
T Consensus 135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~ 212 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCG-VT 212 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CB
T ss_pred HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCC-Cc
Confidence 235679999999988775 4666788899999999999 56654433333 36699999999873 33
Q ss_pred hh----hHHHhcCCCCCceeEEEEcchhh--HHHhhccCCCccCCcceEEecCCCCCCc----cccccccccccceEEee
Q 002863 635 DS----LVEELLGLEHLNVLTITLHSNHA--LQRLLSSSRFQSISIPSLCLRGCRLEPF----TIFSLASLRHLQTLHLV 704 (873)
Q Consensus 635 ~~----~~~~l~~l~~L~~L~l~~~~~~~--l~~~~~~~~~~~~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~ 704 (873)
.. .+..+..+++|+.|+++.+.... +..+.........+|+.|++++|.+... .+..+..+++|++|+++
T Consensus 213 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 292 (461)
T 1z7x_W 213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292 (461)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECC
Confidence 32 46667788999999997554332 2222222222334899999999988764 45556778999999999
Q ss_pred cCCCCcceeeccccccccccCccccccccEEEEccccCCCc------CcccccCCCcEEeeccCccchhhcccCcccccc
Q 002863 705 ECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQV------TWLILAPNLKHLEVQNCPYMEEIINIGKLGEVP 778 (873)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l------~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 778 (873)
+| .+++..+..+... + ....++|++|++++|.++.. ..+..+++|++|+|++|.+....+.
T Consensus 293 ~n-~i~~~~~~~l~~~--l--~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-------- 359 (461)
T 1z7x_W 293 GN-ELGDEGARLLCET--L--LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR-------- 359 (461)
T ss_dssp TC-CCHHHHHHHHHHH--H--TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH--------
T ss_pred CC-CCchHHHHHHHHH--h--ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH--------
Confidence 85 4544332222110 0 02346999999999988764 2456789999999999976543211
Q ss_pred cccccccc-cccccceecccCccccc-----ccccCCCCCCCccEEeEccC
Q 002863 779 AEVMENLT-PFARLEYLILKGLNNLK-----NICSNALPFPRLKEMSVHEC 823 (873)
Q Consensus 779 ~~~~~~~~-~~~~L~~L~L~~~~~L~-----~l~~~~~~~~~L~~L~l~~c 823 (873)
.+...+. ..++|++|++++| .+. .++.....+++|+.|++++|
T Consensus 360 -~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 360 -ELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp -HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred -HHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 0111111 2679999999996 455 44444445677888877766
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.7e-17 Score=176.33 Aligned_cols=189 Identities=21% Similarity=0.254 Sum_probs=103.9
Q ss_pred CCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC---CCccccCcccCCEEecCCCCCCccchhhhcCCCCcEe
Q 002863 524 TSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD---LPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCL 600 (873)
Q Consensus 524 ~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~---lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 600 (873)
.+++|+.|++++|.++.++ .+..+++|++|+|++|. ++. +..+++|++|+|++|.+..+| .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~----~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE----GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCch----hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 3445555555555554443 14455555555555552 233 555556666666655555554 45566666666
Q ss_pred eccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEec
Q 002863 601 NLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLR 680 (873)
Q Consensus 601 ~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~ 680 (873)
++++| .++.+++ +..+++|++|++++|. +....+ +..++ +|+.|+++
T Consensus 113 ~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~--l~~l~---------------------------~L~~L~l~ 159 (308)
T 1h6u_A 113 DLTST-QITDVTP--LAGLSNLQVLYLDLNQ-ITNISP--LAGLT---------------------------NLQYLSIG 159 (308)
T ss_dssp ECTTS-CCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GGGCT---------------------------TCCEEECC
T ss_pred ECCCC-CCCCchh--hcCCCCCCEEECCCCc-cCcCcc--ccCCC---------------------------CccEEEcc
Confidence 66666 5555543 5566666666665542 111000 11111 34455555
Q ss_pred CCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcCcccccCCCcEEeec
Q 002863 681 GCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVTWLILAPNLKHLEVQ 760 (873)
Q Consensus 681 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~ 760 (873)
+|.+.+..+ +..+++|+.|++++| .++++.+ +..+++|+.|++++|.++.++.+..+++|+.|+++
T Consensus 160 ~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-----------l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 160 NAQVSDLTP--LANLSKLTTLKADDN-KISDISP-----------LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225 (308)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-----------GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred CCcCCCChh--hcCCCCCCEEECCCC-ccCcChh-----------hcCCCCCCEEEccCCccCccccccCCCCCCEEEcc
Confidence 555544332 556667777777663 3443211 24567777777777777777667777777777777
Q ss_pred cCccc
Q 002863 761 NCPYM 765 (873)
Q Consensus 761 ~~~~~ 765 (873)
+|+..
T Consensus 226 ~N~i~ 230 (308)
T 1h6u_A 226 NQTIT 230 (308)
T ss_dssp EEEEE
T ss_pred CCeee
Confidence 77653
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=5.1e-19 Score=188.75 Aligned_cols=222 Identities=21% Similarity=0.184 Sum_probs=132.7
Q ss_pred CCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC-----CCCcccc-------CcccCCEEecCCCCCC-ccchh
Q 002863 524 TSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS-----DLPCEIS-------NLVSLQYLDLSNSIPD-RLPLG 590 (873)
Q Consensus 524 ~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n-----~lp~~i~-------~L~~L~~L~L~~~~i~-~lp~~ 590 (873)
..++|+.|++++|.+ .+| ..+... |++|+|++| .+|..+. ++++|++|+|++|.+. .+|..
T Consensus 41 ~~~~L~~l~l~~n~l-~~p--~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADL--GQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEECTTHHHHCCTT-CCC--HHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred cCCCceeEeeccccc-ccH--HHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 456788999999999 666 444433 888999988 3466665 7899999999998886 68887
Q ss_pred h--hcCCCCcEeeccccccccccChhhhCCC-----cccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHh
Q 002863 591 L--KYLVNLKCLNLEYTFRLSRISPQVISNL-----KMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRL 663 (873)
Q Consensus 591 i--~~l~~L~~L~L~~~~~l~~l~~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 663 (873)
+ ..+++|++|++++| .++.+|. .++.+ ++|++|++++| .+....+..++.+++|+.|+++.+........
T Consensus 115 ~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNV-SWATRDA-WLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp SSSCCSCCCSEEEEESC-BCSSSSS-HHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHhcCCCccEEEccCC-CCcchhH-HHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 6 89999999999999 7888854 47666 89999999886 34444456677777777777654332111111
Q ss_pred h-ccCCCccCCcceEEecCCCCCCcc---ccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEcc
Q 002863 664 L-SSSRFQSISIPSLCLRGCRLEPFT---IFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISH 739 (873)
Q Consensus 664 ~-~~~~~~~~~L~~L~L~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 739 (873)
. ........+|+.|++++|.+.... ...+..+++|+.|++++| .+++..+.. .+..+++|+.|+|++
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--------~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAP--------SCDWPSQLNSLNLSF 262 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCS--------CCCCCTTCCEEECTT
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchh--------hhhhcCCCCEEECCC
Confidence 1 111112235555666555554211 112234455555555552 333222110 012345555555555
Q ss_pred ccCCCcCcccccCCCcEEeeccCcc
Q 002863 740 SKLRQVTWLILAPNLKHLEVQNCPY 764 (873)
Q Consensus 740 ~~l~~l~~l~~l~~L~~L~L~~~~~ 764 (873)
|.++.+|.... ++|++|+|++|.+
T Consensus 263 N~l~~ip~~~~-~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 263 TGLKQVPKGLP-AKLSVLDLSYNRL 286 (312)
T ss_dssp SCCSSCCSSCC-SEEEEEECCSSCC
T ss_pred CccChhhhhcc-CCceEEECCCCCC
Confidence 55555442111 4555555555543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=2.8e-17 Score=171.36 Aligned_cols=193 Identities=23% Similarity=0.330 Sum_probs=103.1
Q ss_pred eEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC---CCc-cccCcccCCEEecCC
Q 002863 506 VTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD---LPC-EISNLVSLQYLDLSN 581 (873)
Q Consensus 506 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~---lp~-~i~~L~~L~~L~L~~ 581 (873)
.+.++++++.+..+|... .++|+.|++++|.++.++ ...|.++++|++|+|++|. +|. .+.++++|++|+|++
T Consensus 18 ~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLP--SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCC--TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeC--HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 345666666666554322 245666666666665555 4445556666666666552 232 234555555555555
Q ss_pred CCCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhH
Q 002863 582 SIPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHAL 660 (873)
Q Consensus 582 ~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 660 (873)
|.+..+|.. +..+++|++|++++| .++.+++..|+.+++|++|++++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~------------------------------- 142 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGY------------------------------- 142 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCC-------------------------------
Confidence 555555533 355555555555555 45555554445555555555544
Q ss_pred HHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccc
Q 002863 661 QRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHS 740 (873)
Q Consensus 661 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 740 (873)
|.+....+..+..+++|+.|++++ +.++.+.+..+ ..+++|+.|+|++|
T Consensus 143 ---------------------n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~---------~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 143 ---------------------NELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAF---------DKLTELKTLKLDNN 191 (270)
T ss_dssp ---------------------SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTT---------TTCTTCCEEECCSS
T ss_pred ---------------------CcCCccCHhHccCCcccceeEecC-CcCcEeChhHh---------ccCCCcCEEECCCC
Confidence 333333333345555666666655 33433322222 34566666666666
Q ss_pred cCCCcC--cccccCCCcEEeeccCcc
Q 002863 741 KLRQVT--WLILAPNLKHLEVQNCPY 764 (873)
Q Consensus 741 ~l~~l~--~l~~l~~L~~L~L~~~~~ 764 (873)
.++.++ .+..+++|+.|+|++|+.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 192 QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCcCCHHHhccccCCCEEEecCCCe
Confidence 666554 255566666666666654
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=3.4e-18 Score=178.47 Aligned_cols=120 Identities=22% Similarity=0.280 Sum_probs=64.8
Q ss_pred eEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC--CccccCcccCCEEecCCCC
Q 002863 506 VTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL--PCEISNLVSLQYLDLSNSI 583 (873)
Q Consensus 506 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l--p~~i~~L~~L~~L~L~~~~ 583 (873)
+..+++..+.+........+++|+.|++++|.++.++ .+..+++|++|++++|.+ +..++++++|++|++++|.
T Consensus 21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~----~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ----GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT----TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC
T ss_pred HHHHHhcCcccccccccccccceeeeeeCCCCccccc----ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc
Confidence 3334444444444444445556666666666655443 145566666666666633 2345555666666666665
Q ss_pred CCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEecccc
Q 002863 584 PDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 584 i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
+..+|.. +..+++|++|++++| .++.+++..++.+++|++|++++|
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC
Confidence 5555543 455566666666665 555555554555555555555543
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.2e-17 Score=170.70 Aligned_cols=101 Identities=21% Similarity=0.221 Sum_probs=55.7
Q ss_pred cccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC-C----CccccCcccCCEEecCC-CCCCccch
Q 002863 516 IKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD-L----PCEISNLVSLQYLDLSN-SIPDRLPL 589 (873)
Q Consensus 516 ~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~-l----p~~i~~L~~L~~L~L~~-~~i~~lp~ 589 (873)
+..+|. ..++|++|++++|.++.++ ...|.++++|++|++++|. + +..+.++++|++|++++ |.+..+|.
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIP--SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEEC--TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--CCCcccEEEEeCCcceEEC--HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 444544 3346667777777666666 4456666666666666663 3 22455555555555555 55555553
Q ss_pred -hhhcCCCCcEeeccccccccccChhhhCCCcccc
Q 002863 590 -GLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLR 623 (873)
Q Consensus 590 -~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~ 623 (873)
.|..+++|++|++++| .++.+|. ++.+++|+
T Consensus 99 ~~f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~ 130 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNT-GLKMFPD--LTKVYSTD 130 (239)
T ss_dssp TSEECCTTCCEEEEEEE-CCCSCCC--CTTCCBCC
T ss_pred HHhCCCCCCCEEeCCCC-CCccccc--cccccccc
Confidence 3455555555555555 4555443 44444444
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=3.2e-18 Score=178.65 Aligned_cols=194 Identities=19% Similarity=0.211 Sum_probs=96.4
Q ss_pred CcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC--CccccCcccCCEEecCCCCCCccchhhhcCCCCcEeecc
Q 002863 526 PRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL--PCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLE 603 (873)
Q Consensus 526 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l--p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 603 (873)
..+..+.+..+.+.... .+..+++|+.|++++|.+ ...++.+++|++|++++|.+..++ .+..+++|++|+++
T Consensus 19 ~~l~~l~l~~~~~~~~~----~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV----TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHHTCSCTTSEE----CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT
T ss_pred HHHHHHHhcCccccccc----ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC
Confidence 33444444444443332 134556666666666633 234555666666666666555543 45566666666666
Q ss_pred ccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCC
Q 002863 604 YTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCR 683 (873)
Q Consensus 604 ~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~ 683 (873)
+| .++.+++..++++++|++|++++|. +....+..+..++ +|+.|++++|.
T Consensus 94 ~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~---------------------------~L~~L~L~~n~ 144 (272)
T 3rfs_A 94 GN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLT---------------------------NLTYLNLAHNQ 144 (272)
T ss_dssp TS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT---------------------------TCCEEECCSSC
T ss_pred CC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCC---------------------------CCCEEECCCCc
Confidence 66 5555555555666666666665542 1111111111121 34444445555
Q ss_pred CCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcC--cccccCCCcEEeecc
Q 002863 684 LEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT--WLILAPNLKHLEVQN 761 (873)
Q Consensus 684 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~ 761 (873)
+.+..+..+..+++|+.|++++| .++++.+..+ ..+++|+.|++++|.++.++ .+..+++|+.|++++
T Consensus 145 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 145 LQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVF---------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT---------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCccCHHHhccCccCCEEECCCC-CcCccCHHHh---------cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 44444444455555555555553 3333222222 34455555555555555543 245555555555555
Q ss_pred Cc
Q 002863 762 CP 763 (873)
Q Consensus 762 ~~ 763 (873)
|+
T Consensus 215 N~ 216 (272)
T 3rfs_A 215 NP 216 (272)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=1.9e-17 Score=173.38 Aligned_cols=219 Identities=20% Similarity=0.163 Sum_probs=164.7
Q ss_pred EEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC
Q 002863 486 FLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD 563 (873)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~ 563 (873)
.+.+.+.++..+|. ...+++++|++++|.+..++. ...+++|++|++++|.++.++ ...|.++++|++|+|++|.
T Consensus 11 ~~~c~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC--HHHccCCcCCCEEECCCCc
Confidence 34455666666765 335689999999999998774 467899999999999999888 6779999999999999995
Q ss_pred C----CccccCcccCCEEecCCCCCCccch-hhhcCCCCcEeeccccccccccC-hhhhCCCcccceEeccccCCCchhh
Q 002863 564 L----PCEISNLVSLQYLDLSNSIPDRLPL-GLKYLVNLKCLNLEYTFRLSRIS-PQVISNLKMLRVLRMFECGSFLDSL 637 (873)
Q Consensus 564 l----p~~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l~-~~~i~~l~~L~~L~l~~~~~~~~~~ 637 (873)
+ |..+.++++|++|++++|.+..++. .+..+++|++|++++| .++.++ +..++++++|++|++++|. +....
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~ 165 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIY 165 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEEC
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCC
Confidence 5 4678999999999999999998876 6999999999999999 787743 4459999999999999863 33222
Q ss_pred HHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccc
Q 002863 638 VEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACA 717 (873)
Q Consensus 638 ~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 717 (873)
+..+..+++|+.+.+ .|++++|.+....+..+.. .+|+.|++++| .++.+.+..+
T Consensus 166 ~~~~~~l~~L~~l~l-----------------------~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n-~l~~~~~~~~ 220 (276)
T 2z62_A 166 CTDLRVLHQMPLLNL-----------------------SLDLSLNPMNFIQPGAFKE-IRLKELALDTN-QLKSVPDGIF 220 (276)
T ss_dssp GGGGHHHHTCTTCCE-----------------------EEECCSSCCCEECTTSSCS-CCEEEEECCSS-CCSCCCTTTT
T ss_pred HHHhhhhhhccccce-----------------------eeecCCCcccccCccccCC-CcccEEECCCC-ceeecCHhHh
Confidence 222332333321111 5777778776655544443 47999999884 4665443333
Q ss_pred cccccccCccccccccEEEEccccCC
Q 002863 718 GEMKKIREIHGFHSLQNVYISHSKLR 743 (873)
Q Consensus 718 ~~~~~~~~~~~l~~L~~L~L~~~~l~ 743 (873)
..+++|+.|++++|.++
T Consensus 221 ---------~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 221 ---------DRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ---------TTCCSCCEEECCSSCBC
T ss_pred ---------cccccccEEEccCCccc
Confidence 56788999999998665
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=3.6e-17 Score=170.48 Aligned_cols=143 Identities=27% Similarity=0.391 Sum_probs=124.4
Q ss_pred ceEEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCC
Q 002863 484 EKFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSH 561 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~ 561 (873)
...+..++.+++.+|. ..+.++++|++++|.+..++. ...+++|++|++++|.++.++ ...|..+++|++|+|++
T Consensus 18 ~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP--AGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC--TTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC--hhhhcCCCCCCEEECCC
Confidence 3567778888888775 345789999999999998875 477899999999999999998 77889999999999999
Q ss_pred CCC---C-ccccCcccCCEEecCCCCCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEecccc
Q 002863 562 SDL---P-CEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 562 n~l---p-~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
|.+ | ..+.++++|++|++++|.+..+|.. +..+++|++|++++| .++.+|+..++.+++|++|++++|
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC
Confidence 944 3 4578999999999999999998865 789999999999999 899999887889999999998875
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=4.2e-17 Score=176.93 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=72.4
Q ss_pred EEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----C-ccccCcccCCE-EecCCC
Q 002863 509 MSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----P-CEISNLVSLQY-LDLSNS 582 (873)
Q Consensus 509 l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p-~~i~~L~~L~~-L~L~~~ 582 (873)
++.++++++++|... .+++++|+|++|.++.++ .+.|.++++|++|+|++|.+ | ..|.++++|+. +.+++|
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~--~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQ--KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCCSEEC--TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcCCCcC--HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 444555555555322 356777777777777766 56677777777777777743 2 34566666554 444456
Q ss_pred CCCccc-hhhhcCCCCcEeeccccccccccChhhhCCCcccceEecccc
Q 002863 583 IPDRLP-LGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 583 ~i~~lp-~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
.+..+| ..|..+++|++|++++| .++.+|+..+....++..|++.++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESC
T ss_pred cccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccc
Confidence 666664 34667777777777777 666666654555556666666543
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=3.2e-18 Score=188.75 Aligned_cols=236 Identities=17% Similarity=0.130 Sum_probs=139.5
Q ss_pred CCCCcccEEEecCCccccCCC--CchhhhcCCcceEEecCCC---C----CCccc-------cCcccCCEEecCCCCCCc
Q 002863 523 PTSPRLLTLFLNSNYFKNDKV--NYHFFKSMASLRVLKLSHS---D----LPCEI-------SNLVSLQYLDLSNSIPDR 586 (873)
Q Consensus 523 ~~~~~L~~L~l~~n~l~~~~~--~~~~~~~l~~Lr~L~L~~n---~----lp~~i-------~~L~~L~~L~L~~~~i~~ 586 (873)
..+++|++|++++|.+....+ ....|..+++|++|+|++| . +|..+ ..+++|++|+|++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 456788888888888765431 0133667888999988887 2 23333 678889999999888776
Q ss_pred -----cchhhhcCCCCcEeeccccccccccChhhh----CCC---------cccceEeccccCCCchhhH---HHhcCCC
Q 002863 587 -----LPLGLKYLVNLKCLNLEYTFRLSRISPQVI----SNL---------KMLRVLRMFECGSFLDSLV---EELLGLE 645 (873)
Q Consensus 587 -----lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i----~~l---------~~L~~L~l~~~~~~~~~~~---~~l~~l~ 645 (873)
+|..+..+++|++|+|++| .++..++..+ ..+ ++|++|++++|.-.....+ ..+..++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 7778888899999999888 6654333223 333 7888888887642212222 3556666
Q ss_pred CCceeEEEEcchh--hHHHhhccCCCccCCcceEEecCCCCC----CccccccccccccceEEeecCCCCcceeeccccc
Q 002863 646 HLNVLTITLHSNH--ALQRLLSSSRFQSISIPSLCLRGCRLE----PFTIFSLASLRHLQTLHLVECNDLEDFMIACAGE 719 (873)
Q Consensus 646 ~L~~L~l~~~~~~--~l~~~~~~~~~~~~~L~~L~L~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 719 (873)
+|+.|+++.+... .+..+.+......++|+.|+|++|.+. ...+..+..+++|+.|+|++|. +++.....+.
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~- 265 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVV- 265 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHH-
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHH-
Confidence 7777776544332 222222212222335666666666654 3344455666666666666643 3322111110
Q ss_pred cccccCc--cccccccEEEEccccCCC-----cC-cc-cccCCCcEEeeccCccc
Q 002863 720 MKKIREI--HGFHSLQNVYISHSKLRQ-----VT-WL-ILAPNLKHLEVQNCPYM 765 (873)
Q Consensus 720 ~~~~~~~--~~l~~L~~L~L~~~~l~~-----l~-~l-~~l~~L~~L~L~~~~~~ 765 (873)
..+ ..+++|+.|+|++|.++. ++ .+ ..+++|++|+|++|++.
T Consensus 266 ----~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 266 ----DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp ----HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred ----HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 001 125666666666666655 33 22 34566666666666554
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=6.3e-17 Score=165.40 Aligned_cols=175 Identities=20% Similarity=0.272 Sum_probs=103.1
Q ss_pred CcceEEecCCCCC---C-ccccCcccCCEEecCCCC-CCccch-hhhcCCCCcEeeccccccccccChhhhCCCcccceE
Q 002863 552 ASLRVLKLSHSDL---P-CEISNLVSLQYLDLSNSI-PDRLPL-GLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVL 625 (873)
Q Consensus 552 ~~Lr~L~L~~n~l---p-~~i~~L~~L~~L~L~~~~-i~~lp~-~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L 625 (873)
++|++|++++|.+ | ..++++++|++|++++|. +..+|. .|..+++|++|++++|..++.+++..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 3788888888844 3 367778888888888775 777775 577788888888877227777777667777777777
Q ss_pred eccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCC-CCCCccccccccccccc-eEEe
Q 002863 626 RMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGC-RLEPFTIFSLASLRHLQ-TLHL 703 (873)
Q Consensus 626 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~l~~L~-~L~l 703 (873)
++++|. +.. .+. +..+++|+ .|+.|++++| .+....+..+..+++|+ .|++
T Consensus 111 ~l~~n~-l~~-lp~-~~~l~~L~------------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 111 GIFNTG-LKM-FPD-LTKVYSTD------------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp EEEEEC-CCS-CCC-CTTCCBCC------------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred eCCCCC-Ccc-ccc-cccccccc------------------------cccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 777652 111 111 22222211 1235666666 55555544566666666 6666
Q ss_pred ecCCCCcceeeccccccccccCccccccccEEEEccc-cCCCcC--ccccc-CCCcEEeeccCcc
Q 002863 704 VECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHS-KLRQVT--WLILA-PNLKHLEVQNCPY 764 (873)
Q Consensus 704 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~l~--~l~~l-~~L~~L~L~~~~~ 764 (873)
++ +.++.+....+ .. ++|+.|++++| .++.++ .+..+ ++|+.|++++|.+
T Consensus 164 ~~-n~l~~i~~~~~---------~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 164 YN-NGFTSVQGYAF---------NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp CS-CCCCEECTTTT---------TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred CC-CCCcccCHhhc---------CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence 65 33443222221 12 45666666666 365553 34455 5666666665544
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=1.9e-16 Score=168.17 Aligned_cols=209 Identities=19% Similarity=0.246 Sum_probs=160.0
Q ss_pred EEEecCCccccCCCCchhhhcCCcceEEecCCCC---CCccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccc
Q 002863 530 TLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD---LPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTF 606 (873)
Q Consensus 530 ~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~---lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~ 606 (873)
.+.+..+.+.... .+..+++|++|++++|. +| .+..+++|++|+|++|.+..+|. +..+++|++|++++|
T Consensus 23 ~~~l~~~~~~~~~----~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n- 95 (308)
T 1h6u_A 23 KIAAGKSNVTDTV----TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN- 95 (308)
T ss_dssp HHHTTCSSTTSEE----CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-
T ss_pred HHHhCCCCcCcee----cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-
Confidence 3344444444432 25678899999999994 44 68889999999999999999988 999999999999999
Q ss_pred cccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCC
Q 002863 607 RLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEP 686 (873)
Q Consensus 607 ~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~ 686 (873)
.++.++. +..+++|++|++++|. +... ..+..++ +|+.|++++|.+.+
T Consensus 96 ~l~~~~~--~~~l~~L~~L~l~~n~-l~~~--~~l~~l~---------------------------~L~~L~l~~n~l~~ 143 (308)
T 1h6u_A 96 PLKNVSA--IAGLQSIKTLDLTSTQ-ITDV--TPLAGLS---------------------------NLQVLYLDLNQITN 143 (308)
T ss_dssp CCSCCGG--GTTCTTCCEEECTTSC-CCCC--GGGTTCT---------------------------TCCEEECCSSCCCC
T ss_pred cCCCchh--hcCCCCCCEEECCCCC-CCCc--hhhcCCC---------------------------CCCEEECCCCccCc
Confidence 7888763 8999999999999863 2211 1122222 57777778887776
Q ss_pred ccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcCcccccCCCcEEeeccCccch
Q 002863 687 FTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVTWLILAPNLKHLEVQNCPYME 766 (873)
Q Consensus 687 ~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~~~ 766 (873)
..+ +..+++|+.|++++| .++++.+ +..+++|+.|++++|.++.++.+..+++|++|++++|.+..
T Consensus 144 ~~~--l~~l~~L~~L~l~~n-~l~~~~~-----------l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 144 ISP--LAGLTNLQYLSIGNA-QVSDLTP-----------LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp CGG--GGGCTTCCEEECCSS-CCCCCGG-----------GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCB
T ss_pred Ccc--ccCCCCccEEEccCC-cCCCChh-----------hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCc
Confidence 554 788999999999985 5554322 26789999999999999999889999999999999998652
Q ss_pred hhcccCcccccccccccccccccccceecccCccccccccc
Q 002863 767 EIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICS 807 (873)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~ 807 (873)
.. .+..+++|+.|++++ +.+...+.
T Consensus 210 ~~---------------~l~~l~~L~~L~l~~-N~i~~~~~ 234 (308)
T 1h6u_A 210 VS---------------PLANTSNLFIVTLTN-QTITNQPV 234 (308)
T ss_dssp CG---------------GGTTCTTCCEEEEEE-EEEECCCE
T ss_pred cc---------------cccCCCCCCEEEccC-CeeecCCe
Confidence 11 357789999999998 44555443
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=1.7e-16 Score=172.07 Aligned_cols=234 Identities=18% Similarity=0.176 Sum_probs=170.6
Q ss_pred eEEecCCC---CCCccccCcccCCEEecCCCCCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEecccc
Q 002863 555 RVLKLSHS---DLPCEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 555 r~L~L~~n---~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
++++.+++ .+|..+ .++|++|+|++|.++.+|.. |.++++|++|+|++|..++.+|+++|.++++|.++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56777776 568766 36899999999999999975 8999999999999994456788888999999988666554
Q ss_pred CCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCC-CCCCccccccccc-cccceEEeecCCC
Q 002863 631 GSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGC-RLEPFTIFSLASL-RHLQTLHLVECND 708 (873)
Q Consensus 631 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~l-~~L~~L~l~~~~~ 708 (873)
+.+....+..+..+++|+.|+++.+.. ..+..........+..|++.++ .+....+..+..+ ..++.|++++ +.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l---~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~ 165 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGI---KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NG 165 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECC---SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SC
T ss_pred CcccccCchhhhhcccccccccccccc---ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-cc
Confidence 555555567788999999999965543 3333333444446778888765 4544444455555 4688899987 56
Q ss_pred CcceeeccccccccccCccccccccEEEEccc-cCCCcC--cccccCCCcEEeeccCccchhhcccCccccccccccccc
Q 002863 709 LEDFMIACAGEMKKIREIHGFHSLQNVYISHS-KLRQVT--WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENL 785 (873)
Q Consensus 709 l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~l~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (873)
++.+.+..+ ..++|+.|++.+| .++.++ .+..+++|+.|+|++|.+. .++ .
T Consensus 166 i~~i~~~~f----------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp---------------~ 219 (350)
T 4ay9_X 166 IQEIHNSAF----------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLP---------------S 219 (350)
T ss_dssp CCEECTTSS----------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCC---------------S
T ss_pred ccCCChhhc----------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccC---------------h
Confidence 665443332 3567899999865 888886 4788999999999998754 221 2
Q ss_pred ccccccceecccCcccccccccCCCCCCCccEEeEc
Q 002863 786 TPFARLEYLILKGLNNLKNICSNALPFPRLKEMSVH 821 (873)
Q Consensus 786 ~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~l~ 821 (873)
..|.+|+.|.+.++++++.+|. ...+++|+.+.+.
T Consensus 220 ~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 220 YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 3467888888888888888874 4567888888875
No 87
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=3.4e-17 Score=191.72 Aligned_cols=297 Identities=16% Similarity=0.180 Sum_probs=183.7
Q ss_pred ccceEEEEeecccccccc-----c-cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC-------CCCcccc
Q 002863 503 WKDVTRMSLMDNKIKRLT-----V-SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS-------DLPCEIS 569 (873)
Q Consensus 503 ~~~l~~l~l~~~~~~~l~-----~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n-------~lp~~i~ 569 (873)
++++++|++++|.+..+. . ...+++|++|++++|.+..++ ..+..+++|+.|+++++ ..+..+.
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV---GFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH---HHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH---HHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 456677777666664221 1 135677777777777666543 55667777777777643 2234566
Q ss_pred CcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccCh-hhhCCCcccceEeccccCCCchh-hHHHhcCCCCC
Q 002863 570 NLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISP-QVISNLKMLRVLRMFECGSFLDS-LVEELLGLEHL 647 (873)
Q Consensus 570 ~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~-~~i~~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L 647 (873)
.+++|+.|+++++....+|..+..+++|++|++++| .++.... ..+.++++|++|++.++ .... .......+++|
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA-LLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTC-CCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTC
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCC-cCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCC
Confidence 777788888877777777877888888888888888 3443222 33578888888888742 2222 23333567788
Q ss_pred ceeEEEE----------cch---hhHHHhhccCCCccCCcceEEecCCCCCCcccccccc-ccccceEEeec---CCCCc
Q 002863 648 NVLTITL----------HSN---HALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLAS-LRHLQTLHLVE---CNDLE 710 (873)
Q Consensus 648 ~~L~l~~----------~~~---~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-l~~L~~L~l~~---~~~l~ 710 (873)
+.|+++. +.. ..+..+.. ..++|++|++..+.+++..+..+.. +++|+.|++++ |+.++
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQ----GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHH----HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHh----hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 8888872 111 11222111 1237888888777776655555544 78888888874 45555
Q ss_pred ceeec-cccccccccCccccccccEEEEccc--cCCCc--Cccc-ccCCCcEEeeccCccchhhcccCcccccccccccc
Q 002863 711 DFMIA-CAGEMKKIREIHGFHSLQNVYISHS--KLRQV--TWLI-LAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMEN 784 (873)
Q Consensus 711 ~~~~~-~~~~~~~~~~~~~l~~L~~L~L~~~--~l~~l--~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (873)
+...+ .+. ..+..+++|+.|++++| .++.- ..+. .+++|+.|+|++|...... ....
T Consensus 421 ~~p~~~~~~-----~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------------~~~~ 483 (592)
T 3ogk_B 421 DLPLDNGVR-----SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG------------LMEF 483 (592)
T ss_dssp SCCCHHHHH-----HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH------------HHHH
T ss_pred CchHHHHHH-----HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH------------HHHH
Confidence 42111 010 01245788999999876 24432 2333 4788999999988754321 1123
Q ss_pred cccccccceecccCcccccc--cccCCCCCCCccEEeEccCcCccc
Q 002863 785 LTPFARLEYLILKGLNNLKN--ICSNALPFPRLKEMSVHECSKLRQ 828 (873)
Q Consensus 785 ~~~~~~L~~L~L~~~~~L~~--l~~~~~~~~~L~~L~l~~c~~L~~ 828 (873)
+..+++|++|+|++|+ +.. ++.....+++|+.|++++|+ ++.
T Consensus 484 ~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 4567899999999987 442 22223357899999999987 554
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=7.7e-17 Score=174.18 Aligned_cols=120 Identities=19% Similarity=0.154 Sum_probs=57.0
Q ss_pred eEEEEeeccccccccccCCC--CcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC-----CCccccCcccCCEEe
Q 002863 506 VTRMSLMDNKIKRLTVSPTS--PRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD-----LPCEISNLVSLQYLD 578 (873)
Q Consensus 506 l~~l~l~~~~~~~l~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~-----lp~~i~~L~~L~~L~ 578 (873)
.++++++++.+.. .....+ ++++.|++++|.+.... .. +..+++|++|+|++|. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~--~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPL--AE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCC--CS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCCH-HHHHhhhhccceEEEcCCccccccc--hh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 4456665554431 011112 45556666655555444 22 2345555555555552 233445555555555
Q ss_pred cCCCCCC-ccchhhhcCCCCcEeeccccccccc--cChhhhCCCcccceEecccc
Q 002863 579 LSNSIPD-RLPLGLKYLVNLKCLNLEYTFRLSR--ISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 579 L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~--l~~~~i~~l~~L~~L~l~~~ 630 (873)
|++|.+. ..|..+..+++|++|++++|..++. ++ ..+.++++|++|++++|
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-HHHHHCTTCCEEECCCC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH-HHHhcCCCCCEEcCCCC
Confidence 5555443 3344455555555555555533332 22 22444555555555554
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=4.6e-17 Score=175.94 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=56.5
Q ss_pred ceEEEEeecccccccc-ccCCCCcccEEEecCCccccC-CCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEe
Q 002863 505 DVTRMSLMDNKIKRLT-VSPTSPRLLTLFLNSNYFKND-KVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLD 578 (873)
Q Consensus 505 ~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~ 578 (873)
+++.+++++|.+.... ....+++|++|++++|.++.. . +..+..+++|++|+|++|.+ |..++++++|++|+
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~--~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL--HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHH--HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHH--HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4455555555444322 223345555555555544322 1 23344555555555555533 33444455555555
Q ss_pred cCCC-CCCc--cchhhhcCCCCcEeecccccccccc-ChhhhCCCc-ccceEecccc
Q 002863 579 LSNS-IPDR--LPLGLKYLVNLKCLNLEYTFRLSRI-SPQVISNLK-MLRVLRMFEC 630 (873)
Q Consensus 579 L~~~-~i~~--lp~~i~~l~~L~~L~L~~~~~l~~l-~~~~i~~l~-~L~~L~l~~~ 630 (873)
+++| .+.. +|..+..+++|++|++++|..++.. .+..+..++ +|++|++++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 5554 3442 4444555555555555555333321 112244444 5555555443
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=170.86 Aligned_cols=201 Identities=16% Similarity=0.116 Sum_probs=108.9
Q ss_pred CCcceEEecCCCCC----Cccc--cCcccCCEEecCCCCCCcc-c----hhhhcCCCCcEeeccccccccccChhhhCCC
Q 002863 551 MASLRVLKLSHSDL----PCEI--SNLVSLQYLDLSNSIPDRL-P----LGLKYLVNLKCLNLEYTFRLSRISPQVISNL 619 (873)
Q Consensus 551 l~~Lr~L~L~~n~l----p~~i--~~L~~L~~L~L~~~~i~~l-p----~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l 619 (873)
+++|++|++++|.+ |..+ +.+++|++|+|++|.+... | ..+..+++|++|++++| .+..+++..++.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccC
Confidence 34466666666632 4444 5566666666666655532 1 22345666666666666 5566665556666
Q ss_pred cccceEeccccCCCchh-hH--HHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccc-
Q 002863 620 KMLRVLRMFECGSFLDS-LV--EELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASL- 695 (873)
Q Consensus 620 ~~L~~L~l~~~~~~~~~-~~--~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l- 695 (873)
++|++|++++|...... .+ ..+..+++|+.|+++.+....+............+|++|+|++|.+.+..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 66666666664211110 11 111344555555553332222222111000111267777777777766655555444
Q ss_pred --cccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcCcccccCCCcEEeeccCccc
Q 002863 696 --RHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVTWLILAPNLKHLEVQNCPYM 765 (873)
Q Consensus 696 --~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~~ 765 (873)
++|++|++++ |.++.+ |..+ +++|+.|+|++|+++.+|.+..+++|+.|+|++|++.
T Consensus 249 ~~~~L~~L~Ls~-N~l~~l-p~~~-----------~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSF-AGLEQV-PKGL-----------PAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCTTCCCEECCS-SCCCSC-CSCC-----------CSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred CcCcCCEEECCC-CCCCch-hhhh-----------cCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence 5777777776 344432 2221 2577777777777777766677777777777777653
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=1.6e-16 Score=185.97 Aligned_cols=305 Identities=11% Similarity=0.078 Sum_probs=184.2
Q ss_pred ccceEEEEeecccccccc------ccCCCCcccEEEecCCccccCC--CCchhhhcCCcceEEecCCC---CCCccccCc
Q 002863 503 WKDVTRMSLMDNKIKRLT------VSPTSPRLLTLFLNSNYFKNDK--VNYHFFKSMASLRVLKLSHS---DLPCEISNL 571 (873)
Q Consensus 503 ~~~l~~l~l~~~~~~~l~------~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L 571 (873)
++++++|++++|.+.... ....+++|++|++++|.++.+. .....+.++++|++|++++| .+|..+.++
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 345666666666543321 1134566666666666654222 01233456666666666666 345556666
Q ss_pred ccCCEEecCCC-CC---CccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhH-HHhcCCCC
Q 002863 572 VSLQYLDLSNS-IP---DRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLV-EELLGLEH 646 (873)
Q Consensus 572 ~~L~~L~L~~~-~i---~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~ 646 (873)
++|++|+++.. .. ...+..+..+++|+.|+++++ ....+|. .+..+++|++|++++|. .....+ ..+..+++
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~-~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPI-LFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPN 319 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGG-GGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTT
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHH-HHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcC
Confidence 66666666532 11 233445566667777777665 3444554 47789999999999875 444333 45789999
Q ss_pred CceeEEEEcchhhHHHhhccCCCccCCcceEEecC----------C-CCCCcc-ccccccccccceEEeecCCCCcceee
Q 002863 647 LNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRG----------C-RLEPFT-IFSLASLRHLQTLHLVECNDLEDFMI 714 (873)
Q Consensus 647 L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~----------~-~~~~~~-~~~l~~l~~L~~L~l~~~~~l~~~~~ 714 (873)
|+.|++. +... ...+... ....++|++|++++ | .++... ......+++|++|+++ |+.+++..+
T Consensus 320 L~~L~L~-~~~~-~~~l~~~-~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~ 395 (592)
T 3ogk_B 320 LEVLETR-NVIG-DRGLEVL-AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESL 395 (592)
T ss_dssp CCEEEEE-GGGH-HHHHHHH-HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHH
T ss_pred CCEEecc-CccC-HHHHHHH-HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHH
Confidence 9999997 2211 1111111 11223799999994 4 343322 2224568999999995 466765444
Q ss_pred ccccccccccCccccccccEEEEcc----ccCCCcC-------cccccCCCcEEeeccCcc--chhhcccCccccccccc
Q 002863 715 ACAGEMKKIREIHGFHSLQNVYISH----SKLRQVT-------WLILAPNLKHLEVQNCPY--MEEIINIGKLGEVPAEV 781 (873)
Q Consensus 715 ~~~~~~~~~~~~~~l~~L~~L~L~~----~~l~~l~-------~l~~l~~L~~L~L~~~~~--~~~~~~~~~~~~~~~~~ 781 (873)
..++ ..+++|++|++++ |.++..| .+..+++|+.|+|++|.. ....+.
T Consensus 396 ~~l~--------~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~----------- 456 (592)
T 3ogk_B 396 ESIG--------TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS----------- 456 (592)
T ss_dssp HHHH--------HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH-----------
T ss_pred HHHH--------hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH-----------
Confidence 4432 3478999999973 3677642 255699999999987653 211110
Q ss_pred ccccccccccceecccCcccccc--cccCCCCCCCccEEeEccCc--------------CcccCcCCCcC
Q 002863 782 MENLTPFARLEYLILKGLNNLKN--ICSNALPFPRLKEMSVHECS--------------KLRQLALDCNC 835 (873)
Q Consensus 782 ~~~~~~~~~L~~L~L~~~~~L~~--l~~~~~~~~~L~~L~l~~c~--------------~L~~L~l~~n~ 835 (873)
.....+++|++|++++|. +.. ++.....+++|+.|++++|+ +|+.|.+++|.
T Consensus 457 -~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 457 -YIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp -HHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred -HHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 112347899999999854 543 22223457999999998764 56666776665
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=8.7e-16 Score=161.42 Aligned_cols=148 Identities=22% Similarity=0.214 Sum_probs=89.1
Q ss_pred hhcCCcceEEecCCC---CCCccccCcccCCEEecCCCCCCccc-hhhhcCCCCcEeeccccccccccChhhhCCCcccc
Q 002863 548 FKSMASLRVLKLSHS---DLPCEISNLVSLQYLDLSNSIPDRLP-LGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLR 623 (873)
Q Consensus 548 ~~~l~~Lr~L~L~~n---~lp~~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~ 623 (873)
+.++++|+.++++++ .+|..+. ++|++|+|++|.+..++ ..+..+++|++|++++| .++.+++ .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC--CCCCCcCC
Confidence 567888889999888 4566554 68889999988888775 45888899999999888 7888776 47888888
Q ss_pred eEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEe
Q 002863 624 VLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHL 703 (873)
Q Consensus 624 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 703 (873)
+|+++++. +. ..+..+..+++|+.|+++. +.+..+.+.......+|+.|++++|.+....+..+..+++|+.|++
T Consensus 81 ~L~Ls~N~-l~-~l~~~~~~l~~L~~L~l~~---N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 81 TLDLSHNQ-LQ-SLPLLGQTLPALTVLDVSF---NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp EEECCSSC-CS-SCCCCTTTCTTCCEEECCS---SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCc-CC-cCchhhccCCCCCEEECCC---CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 88888753 22 2233344445555444422 2222222222222224444444444444433333444444444444
Q ss_pred ec
Q 002863 704 VE 705 (873)
Q Consensus 704 ~~ 705 (873)
++
T Consensus 156 ~~ 157 (290)
T 1p9a_G 156 AN 157 (290)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=6e-17 Score=178.54 Aligned_cols=227 Identities=15% Similarity=0.170 Sum_probs=141.6
Q ss_pred hhhhcCCcceEEecCCCCC--------CccccCcccCCEEecCCCCCCc----cchhh-------hcCCCCcEeeccccc
Q 002863 546 HFFKSMASLRVLKLSHSDL--------PCEISNLVSLQYLDLSNSIPDR----LPLGL-------KYLVNLKCLNLEYTF 606 (873)
Q Consensus 546 ~~~~~l~~Lr~L~L~~n~l--------p~~i~~L~~L~~L~L~~~~i~~----lp~~i-------~~l~~L~~L~L~~~~ 606 (873)
..+..+++|++|+|++|.+ +..+..+++|++|+|++|.+.. +|..+ ..+++|++|+|++|
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n- 104 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN- 104 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-
Confidence 5678999999999999954 3457789999999999886664 45444 68999999999999
Q ss_pred cccc-----cChhhhCCCcccceEeccccCCCchhhHHH----hcCC---------CCCceeEEEEcchh--hHHHhhcc
Q 002863 607 RLSR-----ISPQVISNLKMLRVLRMFECGSFLDSLVEE----LLGL---------EHLNVLTITLHSNH--ALQRLLSS 666 (873)
Q Consensus 607 ~l~~-----l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~----l~~l---------~~L~~L~l~~~~~~--~l~~~~~~ 666 (873)
.++. +|. .+.++++|++|++++|. +....+.. +..+ ++|+.|+++.+... .+..+...
T Consensus 105 ~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 105 AFGPTAQEPLID-FLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCTTTHHHHHH-HHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred cCCHHHHHHHHH-HHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 6776 443 48899999999999874 33332322 3333 67777777544332 12211111
Q ss_pred CCCccCCcceEEecCCCCCC-----ccccccccccccceEEeecCCCCcc----eeeccccccccccCccccccccEEEE
Q 002863 667 SRFQSISIPSLCLRGCRLEP-----FTIFSLASLRHLQTLHLVECNDLED----FMIACAGEMKKIREIHGFHSLQNVYI 737 (873)
Q Consensus 667 ~~~~~~~L~~L~L~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~l~~----~~~~~~~~~~~~~~~~~l~~L~~L~L 737 (873)
. ....+|+.|++++|.+.. ..+..+..+++|+.|+|++|. +++ ..+..+ ..+++|+.|+|
T Consensus 183 l-~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l---------~~~~~L~~L~L 251 (386)
T 2ca6_A 183 F-QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIAL---------KSWPNLRELGL 251 (386)
T ss_dssp H-HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHG---------GGCTTCCEEEC
T ss_pred H-HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHH---------ccCCCcCEEEC
Confidence 0 111267777777776652 222255666777777777643 321 112222 45667777777
Q ss_pred ccccCCCc------Ccc--cccCCCcEEeeccCccchh----hcccCccccccccccccc-ccccccceecccCc
Q 002863 738 SHSKLRQV------TWL--ILAPNLKHLEVQNCPYMEE----IINIGKLGEVPAEVMENL-TPFARLEYLILKGL 799 (873)
Q Consensus 738 ~~~~l~~l------~~l--~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~~ 799 (873)
++|.++.. ..+ +.+++|+.|+|++|.+... ++. .+ ..+|+|++|+++++
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~-------------~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT-------------VIDEKMPDLLFLELNGN 313 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH-------------HHHHHCTTCCEEECTTS
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH-------------HHHhcCCCceEEEccCC
Confidence 77766653 123 2267777777777765541 211 22 34677777777764
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=1.5e-15 Score=156.33 Aligned_cols=122 Identities=22% Similarity=0.257 Sum_probs=81.2
Q ss_pred ceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecC
Q 002863 505 DVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLS 580 (873)
Q Consensus 505 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~ 580 (873)
..++++++++.+..+|.... +.++.|++++|.+..++ ...|.++++|++|+|++|.+ |..+.++++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccC--HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 34556666777766664322 56777777777777776 55677777777777777733 3446677777777777
Q ss_pred CCCCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEecccc
Q 002863 581 NSIPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 581 ~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
+|.+..+|.. +..+++|++|++++| .++.+|+..++.+++|++|++++|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC
Confidence 7777766643 566777777777777 666666665666666666666654
No 95
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=1e-14 Score=162.27 Aligned_cols=307 Identities=12% Similarity=0.073 Sum_probs=184.8
Q ss_pred CCcccchhHHHHHHHHHH-hc------CCcEEEEE--EeCCCCcHHHHHHHHHhhhccC--CCCCc-eEEEEEeCCcccH
Q 002863 143 PPTVVGLQLTFDRVWRCL-ME------EHVGIVGL--YGMGGVGKTTLLTQINNRFFDT--PNHFD-FVIWVVVSRDLQL 210 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L-~~------~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~--~~~f~-~~~wv~~s~~~~~ 210 (873)
++.++||+.+++++.+++ .. ...+.+.| +|++|+||||||+.+++..... ...|+ .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 42 24566777 9999999999999999876210 01122 3678887677788
Q ss_pred HHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhc--cCCeEEEEeccccccc--------cccccccCCCCC--C--CC
Q 002863 211 EKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS--KKKFVLLLDDMWELVD--------LDQVGLPIPSRT--S--VS 276 (873)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~--------~~~~~~~l~~~~--~--~g 276 (873)
..++..++.+++..... ...+..+....+.+.+. +++++|||||+|.... +..+...+.... . ..
T Consensus 101 ~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 89999999998764221 12345566667777764 6799999999976321 222211111110 1 34
Q ss_pred cEEEEEccchhhhhccc---------cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhC------Cc
Q 002863 277 NKVVFTTREFEVCGQME---------AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCG------GL 341 (873)
Q Consensus 277 s~iivTtR~~~v~~~~~---------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------gl 341 (873)
..||+||+..++...+. ....+.+.+++.++++++|...+..... ...--.+....|++.|+ |.
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCCc
Confidence 45888888665332111 1223899999999999999876532110 01112567889999999 99
Q ss_pred hhHHHHHHHHHh-----cCC---ChHHHHHHHHHHHchhcccCCchhHH-HHHhhhccccCCcchhHHHHhhhccCC--C
Q 002863 342 PLALITVGRAMA-----SRK---TPREWEHAIEVLRSSASKFAGMEKRV-FSRLKFSFDFLPSDATRFCLLYCTLFP--E 410 (873)
Q Consensus 342 PLai~~~~~~l~-----~~~---~~~~w~~~~~~l~~~~~~~~~~~~~i-~~~l~~sy~~L~~~~~k~cfl~~~~fp--~ 410 (873)
|..+..+..... ... +...+..+.. . .. ...+.-++..||. ..+.++..++.+. .
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~---~----------~~~~~~~~~~l~~l~~-~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS---E----------NEAASIQTHELEALSI-HELIILRLIAEATLGG 324 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH---H----------C------CCSSSSSCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH---H----------HhccchHHHHHHcCCH-HHHHHHHHHHHHHhcC
Confidence 976655543221 111 2222222221 1 01 2345557788998 7788888777643 3
Q ss_pred CccccHHHHHHHHH--H-cCCccCCChhhHHHHHHHHHHHHHHccccccc-----cCCceEEEeee
Q 002863 411 DYRISIEDLIDCWI--C-EGFLDDHDGIEARNQGYSLIRNLLHACLLEEE-----KDNSVKMHYVV 468 (873)
Q Consensus 411 ~~~i~~~~Li~~W~--a-eg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~-----~~~~~~mHdlv 468 (873)
+..++...+...+. + .- ... . .........+++.|...+++... ..+.+++|.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~-~~~-~-~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTM-YNV-K-PRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHH-SCC-C-CCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCCccHHHHHHHHHHHHHhh-cCC-C-CCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 34565555554442 2 11 000 0 11234456789999999999764 23456677765
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=9e-15 Score=158.86 Aligned_cols=292 Identities=16% Similarity=0.109 Sum_probs=175.3
Q ss_pred CCcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc------cHHHHHHH
Q 002863 143 PPTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL------QLEKIQEI 216 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~------~~~~~~~~ 216 (873)
++.++||+.+++++.+++..+ +++.|+|++|+|||||++++++.. . .+|+.+.... +...+...
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHH
Confidence 457999999999999998764 799999999999999999998874 1 6777765442 55666666
Q ss_pred HHHHhCCC--------------C--ccccccCHHHHHHHHHHHhcc-CCeEEEEeccccccc---------cccccccCC
Q 002863 217 IAKKIGLF--------------N--ESWKNKSMQEKAQQIFNILSK-KKFVLLLDDMWELVD---------LDQVGLPIP 270 (873)
Q Consensus 217 i~~~l~~~--------------~--~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~~~~~l~ 270 (873)
+.+.+... . ......+..+....+.+..+. ++++||+||++...+ +..+.....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 66655320 0 000123455566666665543 499999999976443 122221111
Q ss_pred CCCCCCcEEEEEccchhhhhc----------c-cc-ccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHh
Q 002863 271 SRTSVSNKVVFTTREFEVCGQ----------M-EA-HRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDC 338 (873)
Q Consensus 271 ~~~~~gs~iivTtR~~~v~~~----------~-~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c 338 (873)
. ..+.++|+|++...+... . +. ...+++.+|+.+|+.+++.+.+...... --.+.+..|++.|
T Consensus 161 ~--~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~~~t 235 (350)
T 2qen_A 161 S--LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAVELL 235 (350)
T ss_dssp H--CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHH
T ss_pred h--cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHh
Confidence 1 246789999887543111 1 11 2478999999999999998865432211 1245688999999
Q ss_pred CCchhHHHHHHHHHhcCCChHHHHHHHHHHHchhcccCCchhHHHHHhhhccccCCcchhHHHHhhhccCCCCccccHHH
Q 002863 339 GGLPLALITVGRAMASRKTPREWEHAIEVLRSSASKFAGMEKRVFSRLKFSFDFLPSDATRFCLLYCTLFPEDYRISIED 418 (873)
Q Consensus 339 ~glPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~ 418 (873)
+|+|+++..++..+....+..++.. .+...... .....+.. +.+ . ++ ..+..+..+|. + ..+...
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~l~~---l~~-~-~~-~~~~~l~~la~---g-~~~~~~ 300 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMK---RTLEVAKG--LIMGELEE---LRR-R-SP-RYVDILRAIAL---G-YNRWSL 300 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHH--HHHHHHHH---HHH-H-CH-HHHHHHHHHHT---T-CCSHHH
T ss_pred CCCHHHHHHHHHHHhccccHhHHHH---HHHHHHHH--HHHHHHHH---HHh-C-Ch-hHHHHHHHHHh---C-CCCHHH
Confidence 9999999999876543222222211 11110000 00011111 112 2 55 67888888887 2 234455
Q ss_pred HHHHHHHcCCccCCChhhHHHHHHHHHHHHHHccccccccCCceEE-Eeeeech
Q 002863 419 LIDCWICEGFLDDHDGIEARNQGYSLIRNLLHACLLEEEKDNSVKM-HYVVRDM 471 (873)
Q Consensus 419 Li~~W~aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~m-Hdlv~~~ 471 (873)
+....-... - + ........+++.|.+.+++.... ..|.+ |.+++++
T Consensus 301 l~~~~~~~~-~----~-~~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~ 347 (350)
T 2qen_A 301 IRDYLAVKG-T----K-IPEPRLYALLENLKKMNWIVEED-NTYKIADPVVATV 347 (350)
T ss_dssp HHHHHHHTT-C----C-CCHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHH
T ss_pred HHHHHHHHh-C----C-CCHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHH
Confidence 544332211 0 0 11244567899999999998753 45555 3444443
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=1e-15 Score=176.67 Aligned_cols=78 Identities=23% Similarity=0.276 Sum_probs=40.4
Q ss_pred hcCCcceEEecCCCCC--CccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEe
Q 002863 549 KSMASLRVLKLSHSDL--PCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLR 626 (873)
Q Consensus 549 ~~l~~Lr~L~L~~n~l--p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~ 626 (873)
..+++|+.|++++|.+ .+.++.|++|++|+|++|.+..+|. +..+++|++|+|++| .+..+|. ++.+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSS--LKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCTT--STTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCChh--hccCCCCCEEE
Confidence 4455555555555522 1234555555555555555555554 555555555555555 4554442 55555555555
Q ss_pred cccc
Q 002863 627 MFEC 630 (873)
Q Consensus 627 l~~~ 630 (873)
+++|
T Consensus 116 Ls~N 119 (605)
T 1m9s_A 116 LEHN 119 (605)
T ss_dssp CTTS
T ss_pred ecCC
Confidence 5543
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=3.3e-16 Score=183.46 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=45.6
Q ss_pred ccccccEEEEccccCCC--cCcccc-cCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcccccc
Q 002863 728 GFHSLQNVYISHSKLRQ--VTWLIL-APNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKN 804 (873)
Q Consensus 728 ~l~~L~~L~L~~~~l~~--l~~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 804 (873)
.+++|+.|+|++ .++. ++.+.. +++|+.|+|++|......+. .....+++|+.|+|++|+. ..
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~------------~l~~~~~~L~~L~L~~n~~-~~ 495 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH------------HVLSGCDSLRKLEIRDCPF-GD 495 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH------------HHHHHCTTCCEEEEESCSC-CH
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH------------HHHhcCCCcCEEECcCCCC-cH
Confidence 445666666655 3332 123333 66677777766654322111 1124577888888888664 32
Q ss_pred ccc--CCCCCCCccEEeEccCcC
Q 002863 805 ICS--NALPFPRLKEMSVHECSK 825 (873)
Q Consensus 805 l~~--~~~~~~~L~~L~l~~c~~ 825 (873)
... ....+++|+.|++++|+.
T Consensus 496 ~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 496 KALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHhCCCCCEEeeeCCCC
Confidence 211 223467788888887754
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=5.1e-16 Score=169.25 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=80.5
Q ss_pred Eeeccccccc-ccc-CCCCcccEEEecCCccccCCCCc----hhhhcCC-cceEEecCCCCC----CccccCc-----cc
Q 002863 510 SLMDNKIKRL-TVS-PTSPRLLTLFLNSNYFKNDKVNY----HFFKSMA-SLRVLKLSHSDL----PCEISNL-----VS 573 (873)
Q Consensus 510 ~l~~~~~~~l-~~~-~~~~~L~~L~l~~n~l~~~~~~~----~~~~~l~-~Lr~L~L~~n~l----p~~i~~L-----~~ 573 (873)
.++.|.+... +.. ...++|++|++++|.++..+ . ..|..++ +|++|+|++|.+ +..+..+ ++
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIS--TVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSC--HHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHH--HHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4555555542 223 33345888888888887776 5 6677787 888888888854 3344444 78
Q ss_pred CCEEecCCCCCCccchh-----hhcC-CCCcEeeccccccccccChhhh----CC-CcccceEecccc
Q 002863 574 LQYLDLSNSIPDRLPLG-----LKYL-VNLKCLNLEYTFRLSRISPQVI----SN-LKMLRVLRMFEC 630 (873)
Q Consensus 574 L~~L~L~~~~i~~lp~~-----i~~l-~~L~~L~L~~~~~l~~l~~~~i----~~-l~~L~~L~l~~~ 630 (873)
|++|+|++|.+...+.. +..+ ++|++|++++| .++..+...+ .. .++|++|++++|
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 88888888887765433 4444 78888888888 6777766443 33 358888888875
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=3.2e-15 Score=157.27 Aligned_cols=78 Identities=27% Similarity=0.402 Sum_probs=45.4
Q ss_pred cceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcCcccccCC
Q 002863 674 IPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVTWLILAPN 753 (873)
Q Consensus 674 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~ 753 (873)
|+.|++++|.+.+. ..+..+++|+.|++++| .++++.+ +..+++|+.|++++|.++.++.+..+++
T Consensus 136 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~-----------l~~l~~L~~L~L~~N~i~~l~~l~~l~~ 201 (291)
T 1h6t_A 136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP-----------LAGLTKLQNLYLSKNHISDLRALAGLKN 201 (291)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCCCGG-----------GTTCTTCCEEECCSSCCCBCGGGTTCTT
T ss_pred CCEEEccCCcCCcc--hhhccCCCCCEEEccCC-ccccchh-----------hcCCCccCEEECCCCcCCCChhhccCCC
Confidence 34444444444333 24555666666666663 3443221 1456677777777777777766677777
Q ss_pred CcEEeeccCccc
Q 002863 754 LKHLEVQNCPYM 765 (873)
Q Consensus 754 L~~L~L~~~~~~ 765 (873)
|+.|++++|+..
T Consensus 202 L~~L~l~~n~i~ 213 (291)
T 1h6t_A 202 LDVLELFSQECL 213 (291)
T ss_dssp CSEEEEEEEEEE
T ss_pred CCEEECcCCccc
Confidence 777777777654
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=5.8e-16 Score=168.83 Aligned_cols=257 Identities=16% Similarity=0.074 Sum_probs=171.1
Q ss_pred EEEecCCccccCCCCchhhhcCCcceEEecCCCCC---C-----ccccCcc-cCCEEecCCCCCCcc-chhhhcC-----
Q 002863 530 TLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL---P-----CEISNLV-SLQYLDLSNSIPDRL-PLGLKYL----- 594 (873)
Q Consensus 530 ~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l---p-----~~i~~L~-~L~~L~L~~~~i~~l-p~~i~~l----- 594 (873)
.+.++.|.++... +.++...++|++|+|++|.+ + ..+.+++ +|++|+|++|.+... +..+..+
T Consensus 2 ~~~ls~n~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPV--EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHH--HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccccccccchHHH--HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 3577888887766 67777777799999999955 2 5667888 999999999988876 4556665
Q ss_pred CCCcEeeccccccccccChhhh----CCC-cccceEeccccCCCchhhHH----HhcCC-CCCceeEEEEcchhh--HHH
Q 002863 595 VNLKCLNLEYTFRLSRISPQVI----SNL-KMLRVLRMFECGSFLDSLVE----ELLGL-EHLNVLTITLHSNHA--LQR 662 (873)
Q Consensus 595 ~~L~~L~L~~~~~l~~l~~~~i----~~l-~~L~~L~l~~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~--l~~ 662 (873)
++|++|++++| .++..++..+ ..+ ++|++|++++|. +....+. .+..+ ++|+.|+++.+.... ...
T Consensus 80 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 80 ANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp TTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 99999999999 7887776544 444 899999999864 4433333 34453 689999996443321 111
Q ss_pred hhccCCCccCCcceEEecCCCCCCccccccc----cc-cccceEEeecCCCCcceeeccccccccccCccc-cccccEEE
Q 002863 663 LLSSSRFQSISIPSLCLRGCRLEPFTIFSLA----SL-RHLQTLHLVECNDLEDFMIACAGEMKKIREIHG-FHSLQNVY 736 (873)
Q Consensus 663 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~----~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-l~~L~~L~ 736 (873)
+.........+|+.|+|++|.+.+..+..+. .+ ++|+.|+|++| .+++.....+. ..+.. .++|++|+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~-----~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELA-----YIFSSIPNHVVSLN 231 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHH-----HHHHHSCTTCCEEE
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHH-----HHHhcCCCCceEEE
Confidence 1111111112799999999988776654443 34 59999999985 45542221111 01122 45899999
Q ss_pred EccccCCCcC------cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCccccc
Q 002863 737 ISHSKLRQVT------WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLK 803 (873)
Q Consensus 737 L~~~~l~~l~------~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 803 (873)
|++|.++..+ .+..+++|+.|+|++|........ ... .+...+..+++|+.|+++++ .+.
T Consensus 232 Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~--~~~----~l~~~~~~l~~L~~LdL~~N-~l~ 297 (362)
T 3goz_A 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE--QCK----ALGAAFPNIQKIILVDKNGK-EIH 297 (362)
T ss_dssp CCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH--HHH----HHHTTSTTCCEEEEECTTSC-BCC
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHH--HHH----HHHHHhccCCceEEEecCCC-cCC
Confidence 9999888764 246679999999999973211000 000 12235667888999999884 343
No 102
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=2.5e-14 Score=155.75 Aligned_cols=289 Identities=13% Similarity=0.125 Sum_probs=167.5
Q ss_pred CCcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc-----ccHHHHHHHH
Q 002863 143 PPTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-----LQLEKIQEII 217 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~~i 217 (873)
++.++||+++++.|.+ +.. +++.|+|++|+|||||++++++.. . . ..+|+.+... .+.......+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHHHHH
Confidence 4578999999999999 754 699999999999999999999876 2 2 2578887642 2344444444
Q ss_pred HHHhC------------------CCCc----cc-----cccCHHHHHHHHHHHhccCCeEEEEecccccc-----ccccc
Q 002863 218 AKKIG------------------LFNE----SW-----KNKSMQEKAQQIFNILSKKKFVLLLDDMWELV-----DLDQV 265 (873)
Q Consensus 218 ~~~l~------------------~~~~----~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~~ 265 (873)
.+.+. .... .. ...........+.+..+ ++++|||||++... ++..+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 43321 0000 00 01233444444433222 49999999997632 22222
Q ss_pred cccCCCCCCCCcEEEEEccchhhhhc----------c-cc-ccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHH
Q 002863 266 GLPIPSRTSVSNKVVFTTREFEVCGQ----------M-EA-HRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAET 333 (873)
Q Consensus 266 ~~~l~~~~~~gs~iivTtR~~~v~~~----------~-~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~ 333 (873)
...+.+. ..+.++|+|+|....... . +. ...+++.+|+.+|+.+++.+.+...... ... ...
T Consensus 161 l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~----~~~ 234 (357)
T 2fna_A 161 LAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID-FKD----YEV 234 (357)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC-CCC----HHH
T ss_pred HHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC-CCc----HHH
Confidence 1112111 236789999997643111 1 11 2578999999999999999865322111 112 288
Q ss_pred HHHHhCCchhHHHHHHHHHhcCCChHHHHHHHHHHHchhcccCCchhHHHHHhh-hcc--ccCCcchhHHHHhhhccCCC
Q 002863 334 LAKDCGGLPLALITVGRAMASRKTPREWEHAIEVLRSSASKFAGMEKRVFSRLK-FSF--DFLPSDATRFCLLYCTLFPE 410 (873)
Q Consensus 334 i~~~c~glPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~~k~cfl~~~~fp~ 410 (873)
|++.|+|+|+++..++..+....+..+|.. +..... ...+...+. +.+ ..+|+ ..+..+..+|.
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~--- 301 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAIN--QTLEYA-------KKLILKEFENFLHGREIARK-RYLNIMRTLSK--- 301 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHH--HHHHHH-------HHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT---
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHH--HHHHHH-------HHHHHHHHHHHhhccccccH-HHHHHHHHHHc---
Confidence 999999999999999887654333333422 111100 001111111 111 15666 67888888887
Q ss_pred CccccHHHHHHHHH-HcCCccCCChhhHHHHHHHHHHHHHHccccccccCCceEE-Eeeeec
Q 002863 411 DYRISIEDLIDCWI-CEGFLDDHDGIEARNQGYSLIRNLLHACLLEEEKDNSVKM-HYVVRD 470 (873)
Q Consensus 411 ~~~i~~~~Li~~W~-aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~m-Hdlv~~ 470 (873)
+. +...+....- ..|. .........+++.|.+.+++.... ..|.+ |.++++
T Consensus 302 g~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~ 354 (357)
T 2fna_A 302 CG--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISL 354 (357)
T ss_dssp CB--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHH
T ss_pred CC--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHH
Confidence 21 4444433210 1121 011244567899999999997653 44554 445544
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=7.3e-16 Score=164.14 Aligned_cols=218 Identities=14% Similarity=0.113 Sum_probs=152.2
Q ss_pred ceEEEEeecccccc-----ccccCCCCcccEEEecCCccccCCCCchhh--hcCCcceEEecCCCCCCc--------ccc
Q 002863 505 DVTRMSLMDNKIKR-----LTVSPTSPRLLTLFLNSNYFKNDKVNYHFF--KSMASLRVLKLSHSDLPC--------EIS 569 (873)
Q Consensus 505 ~l~~l~l~~~~~~~-----l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~~l~~Lr~L~L~~n~lp~--------~i~ 569 (873)
.++++.+..+.+.. +.....+++|++|++++|.+.... +..+ ..+++|++|+|++|.+.. .+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTM--PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCC--CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccch--hhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 46677776655432 222234567999999999987666 3444 889999999999996532 345
Q ss_pred CcccCCEEecCCCCCCccc-hhhhcCCCCcEeeccccccccc---cCh-hhhCCCcccceEeccccCCCch--hhHH-Hh
Q 002863 570 NLVSLQYLDLSNSIPDRLP-LGLKYLVNLKCLNLEYTFRLSR---ISP-QVISNLKMLRVLRMFECGSFLD--SLVE-EL 641 (873)
Q Consensus 570 ~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~---l~~-~~i~~l~~L~~L~l~~~~~~~~--~~~~-~l 641 (873)
.+++|++|+|++|.+..+| ..++.+++|++|++++| .+.. ++. ..++.+++|++|++++|. +.. ..+. -+
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHH
Confidence 6889999999999888776 56889999999999999 5433 322 224788999999999864 321 1222 24
Q ss_pred cCCCCCceeEEEEcchhhHHHhhccCCCcc---CCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecccc
Q 002863 642 LGLEHLNVLTITLHSNHALQRLLSSSRFQS---ISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAG 718 (873)
Q Consensus 642 ~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~---~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 718 (873)
+.+++|+.|+++ .+.+....+...... .+|+.|++++|.+.. +|..+. ++|+.|++++ |.++++ +.
T Consensus 221 ~~l~~L~~L~Ls---~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~-N~l~~~-~~--- 289 (310)
T 4glp_A 221 AAGVQPHSLDLS---HNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSS-NRLNRA-PQ--- 289 (310)
T ss_dssp HHTCCCSSEECT---TSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCS-CCCCSC-CC---
T ss_pred hcCCCCCEEECC---CCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCC-CcCCCC-ch---
Confidence 678899999994 444444422211111 489999999999884 454553 7999999998 556543 11
Q ss_pred ccccccCccccccccEEEEccccCCC
Q 002863 719 EMKKIREIHGFHSLQNVYISHSKLRQ 744 (873)
Q Consensus 719 ~~~~~~~~~~l~~L~~L~L~~~~l~~ 744 (873)
+..+++|+.|+|++|.+++
T Consensus 290 -------~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 -------PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -------TTSCCCCSCEECSSTTTSC
T ss_pred -------hhhCCCccEEECcCCCCCC
Confidence 2567999999999998765
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=9.4e-15 Score=150.34 Aligned_cols=173 Identities=20% Similarity=0.257 Sum_probs=131.2
Q ss_pred CcceEEecCCC---CCCccccCcccCCEEecCCCCCCccch-hhhcCCCCcEeeccccccccccChhhhCCCcccceEec
Q 002863 552 ASLRVLKLSHS---DLPCEISNLVSLQYLDLSNSIPDRLPL-GLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRM 627 (873)
Q Consensus 552 ~~Lr~L~L~~n---~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l 627 (873)
...++++++++ .+|..+. ++|++|+|++|.+..++. .+.++++|++|++++| .++.+++..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence 45778899888 5576665 689999999998888775 5889999999999998 888888887889999999999
Q ss_pred cccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCC
Q 002863 628 FECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECN 707 (873)
Q Consensus 628 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 707 (873)
+++. +....+..+..+ .+|+.|+|++|.+....+..+..+++|+.|++++ +
T Consensus 91 ~~n~-l~~~~~~~~~~l---------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N 141 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHL---------------------------TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-N 141 (251)
T ss_dssp TTSC-CCCCCTTTTTTC---------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred CCCc-ccccChhHhccc---------------------------CCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-C
Confidence 8753 222111122222 2677777888887777766678888999999988 4
Q ss_pred CCcceeeccccccccccCccccccccEEEEccccCCCcC--cccccCCCcEEeeccCccc
Q 002863 708 DLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT--WLILAPNLKHLEVQNCPYM 765 (873)
Q Consensus 708 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~~ 765 (873)
.++.+.+..+ ..+++|+.|+|++|.++.++ .+..+++|+.|+|++|+..
T Consensus 142 ~l~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 142 QLQSIPAGAF---------DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCCCCCTTTT---------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCccCHHHc---------CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 5665444333 56788999999999888875 5778899999999988764
No 105
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.57 E-value=9.5e-16 Score=179.52 Aligned_cols=35 Identities=14% Similarity=-0.017 Sum_probs=19.3
Q ss_pred CCcccceEeccccCCCchhhH-HHhcCCCCCceeEEE
Q 002863 618 NLKMLRVLRMFECGSFLDSLV-EELLGLEHLNVLTIT 653 (873)
Q Consensus 618 ~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~ 653 (873)
.+++|++|++++|. .....+ ..+..+++|+.|++.
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~ 322 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVL 322 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCc
Confidence 45666666666654 333222 224566666666665
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=5.7e-15 Score=155.32 Aligned_cols=167 Identities=24% Similarity=0.335 Sum_probs=125.1
Q ss_pred cccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC--CccccCcccCCEE
Q 002863 500 VGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL--PCEISNLVSLQYL 577 (873)
Q Consensus 500 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l--p~~i~~L~~L~~L 577 (873)
...++++++|++++|.+..++....+++|++|++++|.++.++ + +..+++|++|++++|.+ ++.++.+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G--GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c--cccCCCCCEEECCCCcCCCChhhccCCCCCEE
Confidence 3456688888888888888877778888999999998888776 3 78888899999988854 3458888889999
Q ss_pred ecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcch
Q 002863 578 DLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSN 657 (873)
Q Consensus 578 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 657 (873)
++++|.+..++ .+..+++|++|++++| .++.++ .++.+++|++|++++|. +....+ +..++
T Consensus 118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~------------ 178 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT--VLSRLTKLDTLSLEDNQ-ISDIVP--LAGLT------------ 178 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCG--GGGGCTTCSEEECCSSC-CCCCGG--GTTCT------------
T ss_pred ECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcch--hhccCCCCCEEEccCCc-cccchh--hcCCC------------
Confidence 99888888874 5888888999999888 777773 38888888888888753 222111 33333
Q ss_pred hhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecC
Q 002863 658 HALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVEC 706 (873)
Q Consensus 658 ~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 706 (873)
+|+.|++++|.+.... .+..+++|+.|++++|
T Consensus 179 ---------------~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 179 ---------------KLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp ---------------TCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEE
T ss_pred ---------------ccCEEECCCCcCCCCh--hhccCCCCCEEECcCC
Confidence 4566666666665542 3677788888888874
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=1.6e-14 Score=142.44 Aligned_cols=153 Identities=21% Similarity=0.302 Sum_probs=96.2
Q ss_pred cCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCc
Q 002863 569 SNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLN 648 (873)
Q Consensus 569 ~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 648 (873)
+.+++|++|++++|.+..+| .+..+++|++|++++| .++.++. ++.+++|++|++++|. +....+..+..++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~--- 112 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGKD-VTSDKIPNLSGLT--- 112 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECTT-CBGGGSCCCTTCT---
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECCc-cCcccChhhcCCC---
Confidence 45566666666666666666 5666667777777666 5555442 6666666666666542 2221222222222
Q ss_pred eeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccc
Q 002863 649 VLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHG 728 (873)
Q Consensus 649 ~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 728 (873)
+|+.|++++|.+.+..+..+..+++|+.|++++|..++++. . +..
T Consensus 113 ------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~---------l~~ 157 (197)
T 4ezg_A 113 ------------------------SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--P---------LKT 157 (197)
T ss_dssp ------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--G---------GGG
T ss_pred ------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--h---------hcC
Confidence 45555556666655555566777788888888765355321 1 256
Q ss_pred cccccEEEEccccCCCcCcccccCCCcEEeeccCcc
Q 002863 729 FHSLQNVYISHSKLRQVTWLILAPNLKHLEVQNCPY 764 (873)
Q Consensus 729 l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~ 764 (873)
+++|+.|++++|.++.++.+..+++|+.|++++|++
T Consensus 158 l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 158 LPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC--
T ss_pred CCCCCEEECCCCCCcChHHhccCCCCCEEEeeCccc
Confidence 788888888888888887788888888888888864
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=1e-14 Score=168.21 Aligned_cols=143 Identities=24% Similarity=0.324 Sum_probs=109.6
Q ss_pred cccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC--CccccCcccCCEE
Q 002863 500 VGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL--PCEISNLVSLQYL 577 (873)
Q Consensus 500 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l--p~~i~~L~~L~~L 577 (873)
...+.+++.|++++|.+..++....+++|+.|+|++|.+..++ + +..+++|++|+|++|.+ ++.++.+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h--hccCCCCCEEECcCCCCCCChhhccCCCCCEE
Confidence 3456678888888888888877788888888888888888776 3 77888888888888844 3478888888888
Q ss_pred ecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEE
Q 002863 578 DLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTIT 653 (873)
Q Consensus 578 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 653 (873)
+|++|.+..+| .+..|++|+.|+|++| .++.++ .++.+++|++|++++|. +....+ +..+++|+.|+++
T Consensus 115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~--~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 115 SLEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT--VLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLS 183 (605)
T ss_dssp ECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCG--GGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECC
T ss_pred EecCCCCCCCc-cccCCCccCEEECCCC-ccCCch--hhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECc
Confidence 88888888875 5888888888888888 777773 38888888888888763 333222 6666666666654
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=1.2e-14 Score=144.95 Aligned_cols=137 Identities=27% Similarity=0.376 Sum_probs=65.6
Q ss_pred EcCCCcccCCccccccceEEEEeecccccccccc--CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC--
Q 002863 489 LTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVS--PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL-- 564 (873)
Q Consensus 489 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l-- 564 (873)
..+.+++.+|. ...+++++|++++|.+..++.. ..+++|++|++++|.++.++ ...|..+++|++|+|++|.+
T Consensus 14 c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 14 CYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP--NGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp CCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCC
T ss_pred ecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC--hhhcCCCCCcCEEECCCCcCCc
Confidence 33444444432 2233455555555555544432 34455555555555555444 34445555555555555522
Q ss_pred -C-ccccCcccCCEEecCCCCCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccc
Q 002863 565 -P-CEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFE 629 (873)
Q Consensus 565 -p-~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~ 629 (873)
| ..++++++|++|++++|.+..+|.. +..+++|++|++++| .++.+++..+..+++|++|++++
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecC
Confidence 2 2234455555555555555554443 344555555555555 44445444445555555555544
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=6.6e-14 Score=141.53 Aligned_cols=141 Identities=26% Similarity=0.330 Sum_probs=119.0
Q ss_pred EEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC
Q 002863 486 FLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD 563 (873)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~ 563 (873)
-+.+++.+++.+|. ...+++++|++++|.+..++. ...+++|++|++++|.+..++ ...|..+++|++|+|++|.
T Consensus 23 ~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~--~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP--VGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC--hhhcccCCCcCEEECCCCc
Confidence 35566777777775 345789999999999988754 367889999999999998888 6778899999999999994
Q ss_pred C---C-ccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEecccc
Q 002863 564 L---P-CEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 564 l---p-~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
| | ..+..+++|++|+|++|.+..+|..+..+++|++|+|++| .++.+++..+..+++|++|++.+|
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 4 3 4468899999999999999999999999999999999999 889998887899999999999885
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=1.5e-13 Score=156.69 Aligned_cols=184 Identities=18% Similarity=0.201 Sum_probs=103.3
Q ss_pred cccEEEecCCccccCCCCchhhhcCCcceEEecCCCC---CCccccCcccCCEEecCCCCCCccchhhhcCCCCcEeecc
Q 002863 527 RLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD---LPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLE 603 (873)
Q Consensus 527 ~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~---lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 603 (873)
+|+.|++++|.++.+| ..+ +++|++|+|++|. +| +.+++|++|+|++|.+..+|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp--~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLP--DNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCC--SCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccC--HhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 4555555555555554 222 2456666666652 23 335566666666666666665 443 66666666
Q ss_pred ccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCC
Q 002863 604 YTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCR 683 (873)
Q Consensus 604 ~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~ 683 (873)
+| .++.+|. .+++|++|++++|. +.. ++. ...+|+.|+|++|.
T Consensus 129 ~N-~l~~lp~----~l~~L~~L~Ls~N~-l~~--------lp~-----------------------~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 129 NN-QLTMLPE----LPALLEYINADNNQ-LTM--------LPE-----------------------LPTSLEVLSVRNNQ 171 (571)
T ss_dssp SS-CCSCCCC----CCTTCCEEECCSSC-CSC--------CCC-----------------------CCTTCCEEECCSSC
T ss_pred CC-cCCCCCC----cCccccEEeCCCCc-cCc--------CCC-----------------------cCCCcCEEECCCCC
Confidence 66 5555554 45666666665542 110 000 01156666666666
Q ss_pred CCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCcC-cccccCCCcEEeeccC
Q 002863 684 LEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT-WLILAPNLKHLEVQNC 762 (873)
Q Consensus 684 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~l~~l~~L~~L~L~~~ 762 (873)
+.+ +|. +. ++|+.|+|++| .++.+. . +.. .+ ....+.|+.|+|++|.++.+| .+..+++|+.|+|++|
T Consensus 172 L~~-lp~-l~--~~L~~L~Ls~N-~L~~lp-~-~~~--~L--~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 172 LTF-LPE-LP--ESLEALDVSTN-LLESLP-A-VPV--RN--HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp CSC-CCC-CC--TTCCEEECCSS-CCSSCC-C-CC------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSS
T ss_pred CCC-cch-hh--CCCCEEECcCC-CCCchh-h-HHH--hh--hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCC
Confidence 655 332 43 67777777763 444322 2 210 00 012234499999999998887 4777999999999999
Q ss_pred ccchhhc
Q 002863 763 PYMEEII 769 (873)
Q Consensus 763 ~~~~~~~ 769 (873)
++...++
T Consensus 241 ~l~~~~p 247 (571)
T 3cvr_A 241 PLSSRIR 247 (571)
T ss_dssp SCCHHHH
T ss_pred cCCCcCH
Confidence 8876554
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=7.6e-14 Score=140.10 Aligned_cols=101 Identities=23% Similarity=0.315 Sum_probs=49.4
Q ss_pred CcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCCCCCCccchh-hhcCCCCcEe
Q 002863 526 PRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCL 600 (873)
Q Consensus 526 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L 600 (873)
++|+.|++++|.++.++ ...|..+++|++|+|++|.+ |..|.++++|++|+|++|.+..+|.. |..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~i~--~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCCcC--HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 34455555555544444 33444555555555555532 34445555555555555555555443 3445555555
Q ss_pred eccccccccccChhhhCCCcccceEeccc
Q 002863 601 NLEYTFRLSRISPQVISNLKMLRVLRMFE 629 (873)
Q Consensus 601 ~L~~~~~l~~l~~~~i~~l~~L~~L~l~~ 629 (873)
+|++| .++.+++..|..+++|++|++++
T Consensus 110 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 110 LLNAN-KINCLRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred ECCCC-CCCEeCHHHcCCCCCCCEEECCC
Confidence 55555 44444444445555555555544
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=138.18 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=73.1
Q ss_pred EEEcCCCcccCCccccccceEEEEeeccccccccc---cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC
Q 002863 487 LVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV---SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD 563 (873)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~ 563 (873)
+..++..++.+|. .....+++|++++|.+..++. ...+++|++|++++|.++.++ ...|.++++|++|+|++|.
T Consensus 16 l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 16 VDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE--EGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSC
T ss_pred eEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC--HHHhCCCCCCCEEECCCCc
Confidence 3444444444443 223344555555555555422 234555555555555555555 4445555555555555552
Q ss_pred C----CccccCcccCCEEecCCCCCCcc-chhhhcCCCCcEeeccccccccccChhhhCCCcccceEecccc
Q 002863 564 L----PCEISNLVSLQYLDLSNSIPDRL-PLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 564 l----p~~i~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
+ |..+.++++|++|+|++|.+..+ |..+..+++|++|+|++| .++.+++..|..+++|++|++++|
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence 2 22355555555555555555555 334555555555555555 555554444555555555555543
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=1.9e-13 Score=137.14 Aligned_cols=142 Identities=26% Similarity=0.310 Sum_probs=124.1
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeeccccccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS 562 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n 562 (873)
..+...+.+++.+|. ..+++++.|++++|.+..++. ...+++|+.|++++|.++.+. +..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~--~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA--PDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC--TTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC--HHHhhCCcCCCEEECCCC
Confidence 446677778888875 345789999999999998875 467899999999999999887 678999999999999999
Q ss_pred C---CCc-cccCcccCCEEecCCCCCCccc-hhhhcCCCCcEeeccccccccccChhhhCCCcccceEecccc
Q 002863 563 D---LPC-EISNLVSLQYLDLSNSIPDRLP-LGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 563 ~---lp~-~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
. +|. .+.++++|++|+|++|.+..++ ..|..+++|++|+|++| .++.+++..+..+++|++|++.+|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 4 454 4688999999999999999985 56999999999999999 899999988999999999999986
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=1.6e-15 Score=173.98 Aligned_cols=204 Identities=18% Similarity=0.168 Sum_probs=139.1
Q ss_pred cCcccCCEEecCCCCCCccchhhhcCCCCcEeecccccc------------ccccChhhhCCCcccceEe-ccccCCCch
Q 002863 569 SNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFR------------LSRISPQVISNLKMLRVLR-MFECGSFLD 635 (873)
Q Consensus 569 ~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~------------l~~l~~~~i~~l~~L~~L~-l~~~~~~~~ 635 (873)
..+++|+.|+|++|.++.+|.++++|++|+.|++++|.. ....++..++.+++|+.|+ +..+ .
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~--- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-Y--- 421 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-H---
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-c---
Confidence 567788888888888888888888888888888866631 2223334455566666555 2221 0
Q ss_pred hhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeec
Q 002863 636 SLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIA 715 (873)
Q Consensus 636 ~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 715 (873)
. .+|..+.+ ..+.+..+... .|+.|+|++|.+.+. |. +..+++|+.|++++| .++. .|.
T Consensus 422 --~------~~L~~l~l---~~n~i~~l~~~------~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N-~l~~-lp~ 480 (567)
T 1dce_A 422 --L------DDLRSKFL---LENSVLKMEYA------DVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHN-RLRA-LPP 480 (567)
T ss_dssp --H------HHHHHHHH---HHHHHHHHHHT------TCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSS-CCCC-CCG
T ss_pred --c------chhhhhhh---hcccccccCcc------CceEEEecCCCCCCC-cC-ccccccCcEeecCcc-cccc-cch
Confidence 0 11111222 22233333221 589999999998874 44 899999999999984 5554 344
Q ss_pred cccccccccCccccccccEEEEccccCCCcCcccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceec
Q 002863 716 CAGEMKKIREIHGFHSLQNVYISHSKLRQVTWLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLI 795 (873)
Q Consensus 716 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 795 (873)
.+ ..+++|+.|+|++|.++.+|.++.+++|+.|+|++|.+.... .+..+..+++|+.|+
T Consensus 481 ~~---------~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~------------~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 481 AL---------AALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA------------AIQPLVSCPRLVLLN 539 (567)
T ss_dssp GG---------GGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSS------------TTGGGGGCTTCCEEE
T ss_pred hh---------hcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCC------------CcHHHhcCCCCCEEE
Confidence 44 678999999999999999999999999999999999875321 023677899999999
Q ss_pred ccCcccccccccCCC----CCCCccEEe
Q 002863 796 LKGLNNLKNICSNAL----PFPRLKEMS 819 (873)
Q Consensus 796 L~~~~~L~~l~~~~~----~~~~L~~L~ 819 (873)
|++ +.++.++.... .+|+|+.|+
T Consensus 540 L~~-N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 540 LQG-NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CTT-SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred ecC-CcCCCCccHHHHHHHHCcccCccC
Confidence 999 56776654322 256666553
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=2.2e-13 Score=134.26 Aligned_cols=146 Identities=22% Similarity=0.273 Sum_probs=114.8
Q ss_pred ccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCE
Q 002863 501 GMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQY 576 (873)
Q Consensus 501 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~ 576 (873)
..++++++|++++|.+..++....+++|++|++++|.++.++ .+..+++|++|++++|.+ |..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN----PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG----GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch----hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 445688889999888888887778889999999988765543 477889999999998844 677888899999
Q ss_pred EecCCCCCCc-cchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEc
Q 002863 577 LDLSNSIPDR-LPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLH 655 (873)
Q Consensus 577 L~L~~~~i~~-lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 655 (873)
|++++|.+.. .|..+..+++|++|++++|..++.+|+ +..+++|++|++++|. +.. ...+..+++|+.|+++.+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~-i~~--~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDG-VHD--YRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBC-CCC--CTTGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCC-CcC--hHHhccCCCCCEEEeeCc
Confidence 9999888775 667788899999999998843777763 8888999999998863 322 226778888888888543
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=1.3e-13 Score=149.92 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=57.0
Q ss_pred EEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhh-cCCcceEEecCCCCC----CccccCcccCCEEecCCC
Q 002863 508 RMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFK-SMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNS 582 (873)
Q Consensus 508 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~ 582 (873)
.++++++.+..+|.. -.+.++.|+|++|.++.++ ...|. ++++|++|+|++|.| |..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~--~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLR--AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEEC--TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccC--hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 344444444444432 1233455555555555444 33343 455555555555532 233455555555555555
Q ss_pred CCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccc
Q 002863 583 IPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFE 629 (873)
Q Consensus 583 ~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~ 629 (873)
.+..+|.. |..+++|++|+|++| .+..+++..|..+++|++|++++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred cCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCC
Confidence 55554432 445555555555555 44544444455555555555554
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=137.49 Aligned_cols=143 Identities=18% Similarity=0.257 Sum_probs=118.7
Q ss_pred EEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCCC
Q 002863 507 TRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNS 582 (873)
Q Consensus 507 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~ 582 (873)
+.+++++|.+..+|.. -.+.++.|++++|.++.+++ ...|..+++|++|+|++|.+ +..|.++++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEA-TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECC-CCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCc-hhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4789999999988753 34678999999999988852 46689999999999999955 457999999999999999
Q ss_pred CCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEE
Q 002863 583 IPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTIT 653 (873)
Q Consensus 583 ~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 653 (873)
.+..+|.. |..+++|++|+|++| .++.+++..|..+++|++|++++| .+....+..+..+++|+.|+++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred ccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEec
Confidence 99998865 899999999999999 899998888999999999999986 3444445566666666666654
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=4.7e-13 Score=133.23 Aligned_cols=176 Identities=22% Similarity=0.220 Sum_probs=140.3
Q ss_pred EEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC---C-ccccCcccCCEEecCCC
Q 002863 507 TRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL---P-CEISNLVSLQYLDLSNS 582 (873)
Q Consensus 507 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l---p-~~i~~L~~L~~L~L~~~ 582 (873)
+.++.+++.+..+|.. ..++|++|++++|.++.++ ...|..+++|++|++++|.+ | ..+..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLP--NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCC--hhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 3567777788777643 3578999999999999888 77889999999999999944 4 34689999999999999
Q ss_pred CCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHH
Q 002863 583 IPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQ 661 (873)
Q Consensus 583 ~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 661 (873)
.+..+|.. +..+++|++|++++| .++.+++..+.++++|++|++++| .+.......+..+++|+.|+++.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~---- 160 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW---- 160 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB----
T ss_pred cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe----
Confidence 99999876 689999999999999 899999888899999999999986 34444444578899999999964321
Q ss_pred HhhccCCCccCCcceEEecCCCCCCccccccccccc
Q 002863 662 RLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRH 697 (873)
Q Consensus 662 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~ 697 (873)
......|+.|+++.|.+.+..|..++.++.
T Consensus 161 ------~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 161 ------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 112226777788888887777766665443
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=2.3e-13 Score=147.97 Aligned_cols=164 Identities=23% Similarity=0.270 Sum_probs=134.0
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeecccccccccc--C-CCCcccEEEecCCccccCCCCchhhhcCCcceEEecCC
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVS--P-TSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSH 561 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~-~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~ 561 (873)
..+.+++.+++.+|. ..+..++.|++++|.+..++.. . .+++|++|+|++|.++.++ +..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS--SEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC--hhhccCCCCCCEEECCC
Confidence 356677888888875 4456799999999999988765 3 7899999999999999998 77899999999999999
Q ss_pred CCC----CccccCcccCCEEecCCCCCCcc-chhhhcCCCCcEeeccccccccccChhhh---CCCcccceEeccccCCC
Q 002863 562 SDL----PCEISNLVSLQYLDLSNSIPDRL-PLGLKYLVNLKCLNLEYTFRLSRISPQVI---SNLKMLRVLRMFECGSF 633 (873)
Q Consensus 562 n~l----p~~i~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~l~~~~i---~~l~~L~~L~l~~~~~~ 633 (873)
|.| +..|.++++|++|+|++|.+..+ |..|..+++|++|+|++| .++.+|...+ ..+++|++|++++| .+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l 175 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KL 175 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CC
Confidence 965 45689999999999999999988 467999999999999999 8999998866 67999999999986 34
Q ss_pred chhhHHHhcCCCCC--ceeEEE
Q 002863 634 LDSLVEELLGLEHL--NVLTIT 653 (873)
Q Consensus 634 ~~~~~~~l~~l~~L--~~L~l~ 653 (873)
....+..+..++.+ +.|++.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECC
T ss_pred CccCHHHhhhccHhhcceEEec
Confidence 44444556656553 555554
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=4.4e-13 Score=138.48 Aligned_cols=146 Identities=23% Similarity=0.229 Sum_probs=103.1
Q ss_pred ccCCccccccceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC---CccccCc
Q 002863 495 TEAPSVGMWKDVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL---PCEISNL 571 (873)
Q Consensus 495 ~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l---p~~i~~L 571 (873)
+.++....++++++|++++|.+..++....+++|++|++++|.++.++ + +..+++|++|+|++|.+ |. +..
T Consensus 32 ~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~--l~~l~~L~~L~L~~N~l~~l~~-~~~- 105 (263)
T 1xeu_A 32 TDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P--LKDLTKLEELSVNRNRLKNLNG-IPS- 105 (263)
T ss_dssp TSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G--GTTCSSCCEEECCSSCCSCCTT-CCC-
T ss_pred ccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h--hccCCCCCEEECCCCccCCcCc-ccc-
Confidence 333444556678888888888887776677788888888888887776 3 77888888888888843 33 333
Q ss_pred ccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeE
Q 002863 572 VSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLT 651 (873)
Q Consensus 572 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 651 (873)
++|++|+|++|.+..+| .+..+++|++|++++| .++.++. ++.+++|++|++++|. +... ..+..+++|+.|+
T Consensus 106 ~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~-i~~~--~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNE-ITNT--GGLTRLKKVNWID 178 (263)
T ss_dssp SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSC-CCBC--TTSTTCCCCCEEE
T ss_pred CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCc-Ccch--HHhccCCCCCEEe
Confidence 78888888888887775 4778888888888888 6777753 7788888888887753 2222 4455555555555
Q ss_pred EE
Q 002863 652 IT 653 (873)
Q Consensus 652 l~ 653 (873)
++
T Consensus 179 l~ 180 (263)
T 1xeu_A 179 LT 180 (263)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=2.9e-13 Score=154.30 Aligned_cols=108 Identities=22% Similarity=0.255 Sum_probs=54.4
Q ss_pred ceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCcccCCEEecCC
Q 002863 505 DVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNLVSLQYLDLSN 581 (873)
Q Consensus 505 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L~~L~L~~ 581 (873)
+++.|++++|.+..+|... +++|++|++++|.++.+| ..+++|++|+|++| .+|. +++ +|++|+|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip------~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP------ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc------cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 4445555555555544322 245555555555555443 12455555555555 2333 333 555555555
Q ss_pred CCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEecccc
Q 002863 582 SIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 582 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
|.+..+|. .+++|++|++++| .++.+|. .+++|++|++++|
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNN 170 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSS
T ss_pred CcCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCC
Confidence 55555554 4555555555555 4555443 3455555555543
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=1.9e-11 Score=134.41 Aligned_cols=300 Identities=15% Similarity=0.017 Sum_probs=182.4
Q ss_pred CcccchhHHHHHHHHHHhc----CCcEEEEEEeCCCCcHHHHHHHHHhhhccC----CCC-CceEEEEEeCCcc-cHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLME----EHVGIVGLYGMGGVGKTTLLTQINNRFFDT----PNH-FDFVIWVVVSRDL-QLEKI 213 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~-f~~~~wv~~s~~~-~~~~~ 213 (873)
+.++||+++++++.+++.. +..+.+.|+|++|+||||+|+.+++..... ... ....+|+.++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5799999999999887753 346689999999999999999999875111 011 2356788877766 78888
Q ss_pred HHHHHHHh-CCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccc--cccc-cccCCCCCCCCcEEEEEccchhhh
Q 002863 214 QEIIAKKI-GLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD--LDQV-GLPIPSRTSVSNKVVFTTREFEVC 289 (873)
Q Consensus 214 ~~~i~~~l-~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~-~~~l~~~~~~gs~iivTtR~~~v~ 289 (873)
+..++.++ +... .....+.......+.+.+..++.+|||||++.... +... ...+... ..+..||+||+.....
T Consensus 100 ~~~l~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~-~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 100 LSSLAGKLTGFSV-PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS-DANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHCSCC-CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS-SSCEEEEEECSSTTTT
T ss_pred HHHHHHHhcCCCC-CCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC-CcceEEEEEECCCchH
Confidence 88888887 3221 11233456667778888877777999999976432 1222 2222222 1567899999875321
Q ss_pred hcc------ccccceeeccCChhhhHHHHHHHhcC--CCCCCCCChHHHHHHHHHHhC---Cchh-HHHHHHHHH--hc-
Q 002863 290 GQM------EAHRSFKVECLRYDDAWKLFELKVGA--DTLDSHPDIPELAETLAKDCG---GLPL-ALITVGRAM--AS- 354 (873)
Q Consensus 290 ~~~------~~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~~~l--~~- 354 (873)
..+ .....+.+++++.++..+++.+.+.. .....+ ++..+.+++.|+ |.|. |+..+-.+. ..
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 111 11238999999999999999988642 111112 345778888888 8876 444443333 21
Q ss_pred --CCChHHHHHHHHHHHchhcccCCchhHHHHHhhhccccCCcchhHHHHhhhccCCCCccccHHHHHHHHHHcCCccCC
Q 002863 355 --RKTPREWEHAIEVLRSSASKFAGMEKRVFSRLKFSFDFLPSDATRFCLLYCTLFPEDYRISIEDLIDCWICEGFLDDH 432 (873)
Q Consensus 355 --~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~aeg~i~~~ 432 (873)
.-+.+.+..+++.... ..+.-+++.|+. +.+..+..++....+..+. +.....--..| +.
T Consensus 255 ~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~-- 316 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK-- 316 (384)
T ss_dssp SSCCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC--
T ss_pred CCccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC--
Confidence 1355666665543321 234456677877 4555554444411101111 11111111222 11
Q ss_pred ChhhHHHHHHHHHHHHHHccccccc-----cCCceEEEeee
Q 002863 433 DGIEARNQGYSLIRNLLHACLLEEE-----KDNSVKMHYVV 468 (873)
Q Consensus 433 ~~~~~~~~~~~~l~~L~~~~ll~~~-----~~~~~~mHdlv 468 (873)
.........++..|...+++... ..+.++++.+.
T Consensus 317 --~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~ 355 (384)
T 2qby_B 317 --PLSYRRFSDIISELDMFGIVKIRIINRGRAGGVKKYALV 355 (384)
T ss_dssp --CCCHHHHHHHHHHHHHTTSEEEEEECCTTTTCCEEEEEE
T ss_pred --CCCHHHHHHHHHHHHhCCCEEEEeccCCCCCceEEEEec
Confidence 12335567789999999999774 23456666554
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=2.8e-13 Score=140.03 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=46.7
Q ss_pred CCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC---CCccccCcccCCEEecCCCCCCccchhhhcCCCCcEee
Q 002863 525 SPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD---LPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLN 601 (873)
Q Consensus 525 ~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~---lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 601 (873)
+.++..++++++.++.++ .+..+++|++|++++|. +| .++.+++|++|+|++|.+..+|. +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~----~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV----SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE----CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc----chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 334444444444444333 13445555555555552 23 44455555555555555555554 55555555555
Q ss_pred ccccccccccChhhhCCCcccceEecccc
Q 002863 602 LEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 602 L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
+++| .++.+|+ +.. ++|++|++++|
T Consensus 92 L~~N-~l~~l~~--~~~-~~L~~L~L~~N 116 (263)
T 1xeu_A 92 VNRN-RLKNLNG--IPS-ACLSRLFLDNN 116 (263)
T ss_dssp CCSS-CCSCCTT--CCC-SSCCEEECCSS
T ss_pred CCCC-ccCCcCc--ccc-CcccEEEccCC
Confidence 5555 4555443 222 55555555543
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=7.4e-13 Score=133.81 Aligned_cols=141 Identities=21% Similarity=0.236 Sum_probs=111.6
Q ss_pred eEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC---C-ccccCcccCCEEecCC
Q 002863 506 VTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL---P-CEISNLVSLQYLDLSN 581 (873)
Q Consensus 506 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l---p-~~i~~L~~L~~L~L~~ 581 (873)
.+.++.+++.+..+|... .++|++|++++|.++.++ +..|..+++|++|+|++|.+ | ..+..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLE--PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccC--HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 446888888888887643 489999999999999987 67799999999999999944 4 4468999999999999
Q ss_pred CCCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEE
Q 002863 582 SIPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTI 652 (873)
Q Consensus 582 ~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 652 (873)
|.+..+|.. +..+++|++|++++| .++.+|.. +..+++|++|++++|. +.......+..+++|+.|++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEe
Confidence 999999876 689999999999999 88999876 7899999999999863 33222233444444444333
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.40 E-value=1e-11 Score=136.60 Aligned_cols=292 Identities=16% Similarity=0.129 Sum_probs=177.5
Q ss_pred CCcccchhHHHHHHHHHHhc----CCcEEEEEEeCCCCcHHHHHHHHHhhhccCC---CCCceEEEEEeCCcccHHHHHH
Q 002863 143 PPTVVGLQLTFDRVWRCLME----EHVGIVGLYGMGGVGKTTLLTQINNRFFDTP---NHFDFVIWVVVSRDLQLEKIQE 215 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~ 215 (873)
++.++||+.+++++.+++.. ...+.+.|+|++|+||||+|+.+++...... ..--..+|+.+....+...+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 36799999999999998843 4567899999999999999999998751100 0112467888888888889999
Q ss_pred HHHHHhCCCCccccccCHHHHHHHHHHHh--ccCCeEEEEecccccccc----cccc---ccCCCCC-CCCcEEEEEccc
Q 002863 216 IIAKKIGLFNESWKNKSMQEKAQQIFNIL--SKKKFVLLLDDMWELVDL----DQVG---LPIPSRT-SVSNKVVFTTRE 285 (873)
Q Consensus 216 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~----~~~~---~~l~~~~-~~gs~iivTtR~ 285 (873)
.++.+++.... ....+..+....+...+ .+++.+|||||++..... +.+. ....... ..+..+|+||+.
T Consensus 98 ~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 98 AIAEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 99999976432 12334566667777777 356889999999764321 1111 1111100 234578888876
Q ss_pred hhhhhcc-----c--cccceeeccCChhhhHHHHHHHhcC--CCCCCCCChHHHHHHHHHHhC---Cchh-HHHHHHHHH
Q 002863 286 FEVCGQM-----E--AHRSFKVECLRYDDAWKLFELKVGA--DTLDSHPDIPELAETLAKDCG---GLPL-ALITVGRAM 352 (873)
Q Consensus 286 ~~v~~~~-----~--~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~~~l 352 (873)
......+ . ....+.+++++.++..+++.+.+.. .....++ +..+.+++.++ |.|- ++..+..+.
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5332111 1 1147899999999999999988642 1111222 34677888888 9994 333333322
Q ss_pred h-----cC--CChHHHHHHHHHHHchhcccCCchhHHHHHhhhccccCCcchhHHHHhhhc-cCCCCccccHHHHHHHHH
Q 002863 353 A-----SR--KTPREWEHAIEVLRSSASKFAGMEKRVFSRLKFSFDFLPSDATRFCLLYCT-LFPEDYRISIEDLIDCWI 424 (873)
Q Consensus 353 ~-----~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~-~fp~~~~i~~~~Li~~W~ 424 (873)
. +. -+.+.++.+++.... ..+.-++..|+. +.+..+...+ ++.....+....+.+...
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 11 245555555443321 234446778887 4554444344 443223455554444321
Q ss_pred ----HcCCccCCChhhHHHHHHHHHHHHHHccccccc
Q 002863 425 ----CEGFLDDHDGIEARNQGYSLIRNLLHACLLEEE 457 (873)
Q Consensus 425 ----aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 457 (873)
..| +. .........+++.|...+++...
T Consensus 320 ~~~~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 320 ELTSTLG-LE----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHTT-CC----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcC-CC----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 122 11 12345667889999999999874
No 127
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.40 E-value=2.5e-13 Score=118.60 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=67.9
Q ss_pred cchhHHHHhHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHH
Q 002863 9 FSCDDTISRCLHCTVRKARYVCNLQDNIHSLQEELRRLTEVRNDVKIRIIVAEQQQ-MKPLEQVHGWLSRVQEVETKVEK 87 (873)
Q Consensus 9 ~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~-~~~~~~v~~Wl~~~~~~~~d~ed 87 (873)
|+++++++||.+++.+|+.++.++++++++|++||+.|+++|.+ |+.++ ...+++++.|+++||+++||+||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999998 55552 12468999999999999999999
Q ss_pred HHh
Q 002863 88 LKE 90 (873)
Q Consensus 88 ~~d 90 (873)
++|
T Consensus 74 ~iD 76 (115)
T 3qfl_A 74 VVD 76 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 999
No 128
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.35 E-value=4.4e-11 Score=131.64 Aligned_cols=294 Identities=14% Similarity=0.073 Sum_probs=177.9
Q ss_pred CcccchhHHHHHHHHHHhc----CCcE--EEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLME----EHVG--IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEII 217 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 217 (873)
+.++||+.+++++.+++.. +... .+.|+|++|+||||+|+.+++.. ..... -.++|+.++...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY-KDKTT-ARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSCC-CEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH-hhhcC-eeEEEEeCccCCCHHHHHHHH
Confidence 5799999999999998865 2334 89999999999999999999887 22112 246778888877888999999
Q ss_pred HHHhCCCCccccccCHHHHHHHHHHHhc--cCCeEEEEeccccc--cccccccccCCCCCC---CCcEEEEEccchhhhh
Q 002863 218 AKKIGLFNESWKNKSMQEKAQQIFNILS--KKKFVLLLDDMWEL--VDLDQVGLPIPSRTS---VSNKVVFTTREFEVCG 290 (873)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~---~gs~iivTtR~~~v~~ 290 (873)
+..++..... ...+.......+...+. +++.+|||||++.. .....+...+..... .+..||+||+......
T Consensus 95 ~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 95 ARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 9988754221 23345666666666664 56889999999764 223333222222101 3567888887764432
Q ss_pred ccc-------cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHh---------CCchhHHHHHHHH-Hh
Q 002863 291 QME-------AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDC---------GGLPLALITVGRA-MA 353 (873)
Q Consensus 291 ~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~glPLai~~~~~~-l~ 353 (873)
.+. ....+.+.+++.++..+++...+..... ...--++....|++.+ +|.|..+..+... ..
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 221 1236899999999999999987643110 0111246778899999 7887554443322 21
Q ss_pred ----cCCChHHHHHHHHHHHchhcccCCchhHHHHHhhhccccCCcchhHHHHhhhccCC---CCccccHHHHHHHHHH-
Q 002863 354 ----SRKTPREWEHAIEVLRSSASKFAGMEKRVFSRLKFSFDFLPSDATRFCLLYCTLFP---EDYRISIEDLIDCWIC- 425 (873)
Q Consensus 354 ----~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp---~~~~i~~~~Li~~W~a- 425 (873)
.....-.++.+...+.... ...+.-.+..||. +.+.++..++.+. .+..+....+...+-.
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 0111112222222221111 0112223556776 5666665555443 2225566666554432
Q ss_pred ---cCCccCCChhhHHHHHHHHHHHHHHccccccc
Q 002863 426 ---EGFLDDHDGIEARNQGYSLIRNLLHACLLEEE 457 (873)
Q Consensus 426 ---eg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 457 (873)
.|. .. ........++++|...+++...
T Consensus 322 ~~~~~~-~~----~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 322 CEEYGE-RP----RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHTTC-CC----CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHcCC-CC----CCHHHHHHHHHHHHhCCCeEEe
Confidence 121 11 1234566789999999999874
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=1.3e-12 Score=125.06 Aligned_cols=122 Identities=22% Similarity=0.185 Sum_probs=65.8
Q ss_pred cceEEEEeeccccc--ccccc-CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC----CCccccCcccCCE
Q 002863 504 KDVTRMSLMDNKIK--RLTVS-PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD----LPCEISNLVSLQY 576 (873)
Q Consensus 504 ~~l~~l~l~~~~~~--~l~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~----lp~~i~~L~~L~~ 576 (873)
+++++|++++|.+. .++.. ..+++|++|++++|.++.+. .|..+++|++|+|++|. +|..+.++++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS----NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCS----SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChh----hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 35556666655555 44443 44555666666655554441 24555556666665552 3444444555566
Q ss_pred EecCCCCCCccc--hhhhcCCCCcEeeccccccccccCh---hhhCCCcccceEecccc
Q 002863 577 LDLSNSIPDRLP--LGLKYLVNLKCLNLEYTFRLSRISP---QVISNLKMLRVLRMFEC 630 (873)
Q Consensus 577 L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~l~~l~~---~~i~~l~~L~~L~l~~~ 630 (873)
|++++|.+..+| ..+..+++|++|++++| .++.+|+ ..+..+++|++|++.+|
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 666555555554 44555555666666555 5555554 34555555555555554
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=1.1e-12 Score=122.76 Aligned_cols=120 Identities=23% Similarity=0.205 Sum_probs=68.7
Q ss_pred cceEEEEeeccccc--ccccc-CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC----CCccccCcccCCE
Q 002863 504 KDVTRMSLMDNKIK--RLTVS-PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD----LPCEISNLVSLQY 576 (873)
Q Consensus 504 ~~l~~l~l~~~~~~--~l~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~----lp~~i~~L~~L~~ 576 (873)
+++++|++++|.+. .++.. ..+++|++|++++|.++.+ ..+..+++|++|++++|. +|..++.+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 35666666666665 44433 4556666666666665544 225556666666666662 3444445666666
Q ss_pred EecCCCCCCccc--hhhhcCCCCcEeeccccccccccCh---hhhCCCcccceEecc
Q 002863 577 LDLSNSIPDRLP--LGLKYLVNLKCLNLEYTFRLSRISP---QVISNLKMLRVLRMF 628 (873)
Q Consensus 577 L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~l~~l~~---~~i~~l~~L~~L~l~ 628 (873)
|++++|.+..+| ..++.+++|++|++++| .++.+|+ ..++.+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 666666666554 45666666666666666 5555554 345556666666553
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=1.5e-12 Score=125.67 Aligned_cols=124 Identities=18% Similarity=0.106 Sum_probs=78.1
Q ss_pred cccceEEEEeeccccccccccCCCC-cccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC---Ccc-ccCcccCCE
Q 002863 502 MWKDVTRMSLMDNKIKRLTVSPTSP-RLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL---PCE-ISNLVSLQY 576 (873)
Q Consensus 502 ~~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l---p~~-i~~L~~L~~ 576 (873)
.+.+++.|++++|.+..++....+. +|++|++++|.++.++ .|..+++|++|+|++|.+ |.. ++.+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~----~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD----GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC----CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc----ccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3446677777777766665444433 6777777777665542 256667777777777743 333 366667777
Q ss_pred EecCCCCCCccch--hhhcCCCCcEeeccccccccccChh---hhCCCcccceEecccc
Q 002863 577 LDLSNSIPDRLPL--GLKYLVNLKCLNLEYTFRLSRISPQ---VISNLKMLRVLRMFEC 630 (873)
Q Consensus 577 L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~l~~~---~i~~l~~L~~L~l~~~ 630 (873)
|++++|.+..+|. .+..+++|++|++++| .+..+|.. .++.+++|+.|++.++
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 7777776666665 5666777777777766 56665543 3566666666666654
No 132
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=2.2e-11 Score=133.97 Aligned_cols=305 Identities=11% Similarity=0.097 Sum_probs=176.5
Q ss_pred CCcccchhHHHHHHHHHHhc----CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHH
Q 002863 143 PPTVVGLQLTFDRVWRCLME----EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIA 218 (873)
Q Consensus 143 ~~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 218 (873)
++.++||+++++.+.+++.. +....+.|+|++|+||||||+.+++........-...+|+.+....+...+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999998863 45678999999999999999999987621111022567887776667778888888
Q ss_pred HHhCCCCccccccCHHHHHHHHHHHhc--cCCeEEEEeccccccc------cccccccCCCCCCCCcEEEEEccchhhhh
Q 002863 219 KKIGLFNESWKNKSMQEKAQQIFNILS--KKKFVLLLDDMWELVD------LDQVGLPIPSRTSVSNKVVFTTREFEVCG 290 (873)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~------~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 290 (873)
.+++..... ...+..+....+.+.+. +++.+||||+++...+ +..+...+......+..+|+||+......
T Consensus 99 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 99 ESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 887653221 23345566666666664 4589999999976321 12221111110134567788888664332
Q ss_pred ccc-------cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhC---CchhHHH-HHHHHHh-----c
Q 002863 291 QME-------AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCG---GLPLALI-TVGRAMA-----S 354 (873)
Q Consensus 291 ~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPLai~-~~~~~l~-----~ 354 (873)
.+. ....+.+++++.++..+++.+.+.... ....-..++...+++.++ |.|..+. .+..+.. +
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 221 114789999999999999998754211 011222556778888887 9988443 3332221 1
Q ss_pred --CCChHHHHHHHHHHHchhcccCCchhHHHHHhhhccccCCcchhHHHHhhhcc-CCCC-ccccHHHHHHHH--HH--c
Q 002863 355 --RKTPREWEHAIEVLRSSASKFAGMEKRVFSRLKFSFDFLPSDATRFCLLYCTL-FPED-YRISIEDLIDCW--IC--E 426 (873)
Q Consensus 355 --~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~-fp~~-~~i~~~~Li~~W--~a--e 426 (873)
.-+.+.++.+.+... ...+.-.+..+|. ..+..+..++. +-.+ ..+....+.+.. ++ .
T Consensus 257 ~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEIE-------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp CSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 124444544433221 1234445667776 44544444442 2111 223343332222 11 1
Q ss_pred CCccCCChhhHHHHHHHHHHHHHHccccccc-----cCCceEEEeee
Q 002863 427 GFLDDHDGIEARNQGYSLIRNLLHACLLEEE-----KDNSVKMHYVV 468 (873)
Q Consensus 427 g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~-----~~~~~~mHdlv 468 (873)
| +.. ........+++.|...+++... ..+.|+.+.+.
T Consensus 323 g-~~~----~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~y~~~~l~ 364 (386)
T 2qby_A 323 G-VEA----VTQRRVSDIINELDMVGILTAKVVNRGRYGKTKEIGLA 364 (386)
T ss_dssp T-CCC----CCHHHHHHHHHHHHHHTSEEEEECCCTTSCCCEEEEES
T ss_pred C-CCC----CCHHHHHHHHHHHHhCCCEEEEeecCCCCCCeEEEEeC
Confidence 2 111 1224556789999999999763 23345555443
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=4.6e-12 Score=124.07 Aligned_cols=122 Identities=21% Similarity=0.235 Sum_probs=104.8
Q ss_pred EEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCCC
Q 002863 507 TRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNS 582 (873)
Q Consensus 507 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~ 582 (873)
+.++++++.+..+|... .++|++|++++|.++.+++ ...|..+++|++|+|++|.+ |..+.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISS-DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCC-SCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCC-ccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 57888888888887643 3489999999999988872 23589999999999999944 778999999999999999
Q ss_pred CCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccccC
Q 002863 583 IPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECG 631 (873)
Q Consensus 583 ~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~ 631 (873)
.+..+|.. |..+++|++|+|++| .++.+++..++.+++|++|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 99998765 889999999999999 8888877779999999999999863
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=4.3e-13 Score=158.86 Aligned_cols=102 Identities=26% Similarity=0.248 Sum_probs=53.5
Q ss_pred CCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCcccCCEEecCCCCCCccchhhhcCCCCcEe
Q 002863 524 TSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCL 600 (873)
Q Consensus 524 ~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 600 (873)
.++.|+.|+|++|.+..++ ...+ ++++|++|+|++| .+|..|++|++|++|+|++|.+..+|..|+.|++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~--~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNIS--ANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCCSCCC--GGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCCCCCC--hhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 3455555555555555444 2322 4555555555555 33555555555555555555555555555555555555
Q ss_pred eccccccccccChhhhCCCcccceEecccc
Q 002863 601 NLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 601 ~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
+|++| .++.+|.. |++|++|++|++++|
T Consensus 299 ~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 299 YFFDN-MVTTLPWE-FGNLCNLQFLGVEGN 326 (727)
T ss_dssp ECCSS-CCCCCCSS-TTSCTTCCCEECTTS
T ss_pred ECCCC-CCCccChh-hhcCCCccEEeCCCC
Confidence 55555 45555544 555555555555543
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=8.3e-12 Score=122.17 Aligned_cols=119 Identities=21% Similarity=0.233 Sum_probs=102.9
Q ss_pred EEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCCC
Q 002863 507 TRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNS 582 (873)
Q Consensus 507 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~ 582 (873)
+.++++++.+..+|.. -.++|++|++++|.++.++ ..|.++++|++|+|++|.| +..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip---~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVP---KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCC---GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhH---HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4677888888888754 3478999999999998776 4689999999999999954 456899999999999999
Q ss_pred CCCccch-hhhcCCCCcEeeccccccccccChhhhCCCcccceEecccc
Q 002863 583 IPDRLPL-GLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 583 ~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
.+..+|. .|..+++|++|+|++| .++.+|+..|..+++|++|++.+|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence 9999886 5899999999999999 899999888999999999999885
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=1.4e-11 Score=118.99 Aligned_cols=120 Identities=22% Similarity=0.305 Sum_probs=103.5
Q ss_pred EEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC---C-ccccCcccCCEEecCCC
Q 002863 507 TRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL---P-CEISNLVSLQYLDLSNS 582 (873)
Q Consensus 507 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l---p-~~i~~L~~L~~L~L~~~ 582 (873)
+.++++++.+..+|.. ..++|+.|++++|.++.++ ...|..+++|++|++++|.+ | ..++.+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeC--HHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4677778888877643 3478999999999999888 67789999999999999944 4 34689999999999999
Q ss_pred CCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEecccc
Q 002863 583 IPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 583 ~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
.+..+|.. +..+++|++|++++| .++.+|+..+..+++|++|++++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 99999876 689999999999999 899999887889999999999986
No 137
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=8.6e-12 Score=119.35 Aligned_cols=128 Identities=23% Similarity=0.239 Sum_probs=104.4
Q ss_pred CCCCcccEEEecCCccc--cCCCCchhhhcCCcceEEecCCCCC--CccccCcccCCEEecCCCCCCc-cchhhhcCCCC
Q 002863 523 PTSPRLLTLFLNSNYFK--NDKVNYHFFKSMASLRVLKLSHSDL--PCEISNLVSLQYLDLSNSIPDR-LPLGLKYLVNL 597 (873)
Q Consensus 523 ~~~~~L~~L~l~~n~l~--~~~~~~~~~~~l~~Lr~L~L~~n~l--p~~i~~L~~L~~L~L~~~~i~~-lp~~i~~l~~L 597 (873)
...++|+.|++++|.++ .++ ..+..+++|++|++++|.+ ...++.+++|++|++++|.+.. +|..+..+++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~---~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIE---GLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCS---SCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChhhHH---HHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 44588999999999998 665 4478999999999999954 2678899999999999999988 77778889999
Q ss_pred cEeeccccccccccCh-hhhCCCcccceEeccccCCCchhhH---HHhcCCCCCceeEEEEc
Q 002863 598 KCLNLEYTFRLSRISP-QVISNLKMLRVLRMFECGSFLDSLV---EELLGLEHLNVLTITLH 655 (873)
Q Consensus 598 ~~L~L~~~~~l~~l~~-~~i~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~ 655 (873)
++|++++| .++.+|. ..++.+++|++|++++|. +..... ..+..+++|+.|+++.+
T Consensus 98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 99999999 8888863 458999999999999863 333222 46777888877777543
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=2.2e-11 Score=130.46 Aligned_cols=274 Identities=13% Similarity=0.091 Sum_probs=161.6
Q ss_pred cccceEEEEeecccc-ccccccCC-CCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCCCc-cccC--------
Q 002863 502 MWKDVTRMSLMDNKI-KRLTVSPT-SPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDLPC-EISN-------- 570 (873)
Q Consensus 502 ~~~~l~~l~l~~~~~-~~l~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~lp~-~i~~-------- 570 (873)
.+.++++|.+.++-- ..+..... +++|++|+|++|.+........ .++.++.+.+..|.||. .|.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVPAYAFSNVVNGVTKG 99 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEECTTTTEEEETTEEEE
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccCHHHhcccccccccc
Confidence 355788888876411 11112222 7889999999999872221122 23336777777777753 4566
Q ss_pred cccCCEEecCCCCCCccchh-hhcCCCCcEeeccccccccccChhhhCCCcccceEeccccC---CCchhhHHHhcCCCC
Q 002863 571 LVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECG---SFLDSLVEELLGLEH 646 (873)
Q Consensus 571 L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~---~~~~~~~~~l~~l~~ 646 (873)
+++|+.|+|.+ .+..++.. |..|++|+.|++++| .+..+++.+|..+.++..+...... .........+.++..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 89999999988 88888765 889999999999988 7788888888888888877665410 000001112334444
Q ss_pred Cc-eeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccC
Q 002863 647 LN-VLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIRE 725 (873)
Q Consensus 647 L~-~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 725 (873)
|+ .+.+. ....+............++..+.+.++-...........+++|+.|+|++ +.++.+....+
T Consensus 178 L~~~i~~~--~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~~~aF-------- 246 (329)
T 3sb4_A 178 LETTIQVG--AMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK-TNATTIPDFTF-------- 246 (329)
T ss_dssp CEEEEEEC--TTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT-BCCCEECTTTT--------
T ss_pred cceeEEec--CCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC-CCcceecHhhh--------
Confidence 54 33332 22223322222222222556666655422111111112367788888876 34555444444
Q ss_pred ccccccccEEEEccccCCCcC--cccccCCCc-EEeeccCccchhhcccCcccccccccccccccccccceecccCcccc
Q 002863 726 IHGFHSLQNVYISHSKLRQVT--WLILAPNLK-HLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNL 802 (873)
Q Consensus 726 ~~~l~~L~~L~L~~~~l~~l~--~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L 802 (873)
..+++|+.|+|.+| ++.++ .+..+++|+ .|.+.+ .++.+.. ..+.++++|+.+++.+ +++
T Consensus 247 -~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~------------~aF~~c~~L~~l~l~~-n~i 309 (329)
T 3sb4_A 247 -AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF------------GAFMGCDNLRYVLATG-DKI 309 (329)
T ss_dssp -TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECT------------TTTTTCTTEEEEEECS-SCC
T ss_pred -hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEch------------hhhhCCccCCEEEeCC-Ccc
Confidence 56777888888776 66654 567777887 887766 2222211 3566777888888766 667
Q ss_pred cccccC
Q 002863 803 KNICSN 808 (873)
Q Consensus 803 ~~l~~~ 808 (873)
+.++..
T Consensus 310 ~~I~~~ 315 (329)
T 3sb4_A 310 TTLGDE 315 (329)
T ss_dssp CEECTT
T ss_pred Cccchh
Confidence 777654
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=1.1e-12 Score=155.54 Aligned_cols=115 Identities=24% Similarity=0.319 Sum_probs=84.9
Q ss_pred ccccceEEEEeecccccccccc-CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCcccCCE
Q 002863 501 GMWKDVTRMSLMDNKIKRLTVS-PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNLVSLQY 576 (873)
Q Consensus 501 ~~~~~l~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L~~ 576 (873)
..+..++.|++++|.+..++.. ..+++|++|+|++|.++.+| ..|.++++|++|+|++| .+|..|++|++|++
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELP---AEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCC---GGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred ccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccC---hhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 3456778888888887776643 56778888888888877665 34677888888888888 45777888888888
Q ss_pred EecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCC
Q 002863 577 LDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNL 619 (873)
Q Consensus 577 L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l 619 (873)
|+|++|.+..+|..|++|++|++|+|++| .++..++..+..+
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGN-PLEKQFLKILTEK 339 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTS-CCCSHHHHHHHHH
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCC-ccCCCChHHHhhc
Confidence 88888888888877888888888888888 6776665545443
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=6.2e-12 Score=117.62 Aligned_cols=124 Identities=21% Similarity=0.243 Sum_probs=102.4
Q ss_pred CCCcccEEEecCCccc--cCCCCchhhhcCCcceEEecCCCCC--CccccCcccCCEEecCCCCCCc-cchhhhcCCCCc
Q 002863 524 TSPRLLTLFLNSNYFK--NDKVNYHFFKSMASLRVLKLSHSDL--PCEISNLVSLQYLDLSNSIPDR-LPLGLKYLVNLK 598 (873)
Q Consensus 524 ~~~~L~~L~l~~n~l~--~~~~~~~~~~~l~~Lr~L~L~~n~l--p~~i~~L~~L~~L~L~~~~i~~-lp~~i~~l~~L~ 598 (873)
..++|+.|++++|.++ .++ ..+..+++|++|++++|.+ ...++++++|++|++++|.+.. +|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLE---GLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCC---SCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHH---HHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 4578999999999998 555 4678999999999999954 2678899999999999999988 888888899999
Q ss_pred EeeccccccccccC-hhhhCCCcccceEeccccCCCchhhH---HHhcCCCCCceeEE
Q 002863 599 CLNLEYTFRLSRIS-PQVISNLKMLRVLRMFECGSFLDSLV---EELLGLEHLNVLTI 652 (873)
Q Consensus 599 ~L~L~~~~~l~~l~-~~~i~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l 652 (873)
+|++++| .++.++ +..++.+++|++|++++|. +..... ..+..+++|+.|++
T Consensus 92 ~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 92 HLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred EEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 9999999 788875 2458999999999999863 333322 46777888887765
No 141
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.20 E-value=1.5e-10 Score=118.24 Aligned_cols=197 Identities=13% Similarity=0.116 Sum_probs=116.2
Q ss_pred CcccchhHHHHHHHHHHhcCC-cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEH-VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
+.++||+..++.+..++..+. .+++.|+|++|+||||+|+.+++.. .....+.. ..+...... ..+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~-~~~~~~~~---~~~~~~~~~----~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGITA---TPCGVCDNC----REIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH-HCTTCSCS---SCCSCSHHH----HHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCC---CCCcccHHH----HHHhccCC
Confidence 458999999999999987654 3588999999999999999998876 22111100 000000000 00100000
Q ss_pred CCCc--cccccCHHHHHHHHHHHh-----ccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEccchhh-hhc-
Q 002863 223 LFNE--SWKNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTREFEV-CGQ- 291 (873)
Q Consensus 223 ~~~~--~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~v-~~~- 291 (873)
...- .............+.+.+ .+++.+||+||++.. ..+..+...+... ..+..+|+||+.... ...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGSCHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-CCceEEEEEeCChHhCCHHH
Confidence 0000 000001111122222222 356899999999753 3344444444333 456788888876532 111
Q ss_pred cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHH
Q 002863 292 MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAM 352 (873)
Q Consensus 292 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 352 (873)
......+++++++.++..+++.+.+....... -++....|++.|+|.|..+..+...+
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12245789999999999999998875432111 24567899999999999988776543
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=9.8e-11 Score=125.45 Aligned_cols=260 Identities=13% Similarity=0.084 Sum_probs=179.6
Q ss_pred ccceEEEEeecccccccccc-CCCCcccEEEecCCccccCCCCchhhhc--------CCcceEEecCCC--CC-CccccC
Q 002863 503 WKDVTRMSLMDNKIKRLTVS-PTSPRLLTLFLNSNYFKNDKVNYHFFKS--------MASLRVLKLSHS--DL-PCEISN 570 (873)
Q Consensus 503 ~~~l~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~--------l~~Lr~L~L~~n--~l-p~~i~~ 570 (873)
+++++.|++++|.+...... ..++.++.+.+..+ .++ ...|.+ |++|+.|+|.++ .| +..|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~--~~aF~~~~~~~~~g~~~L~~l~L~~~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVP--AYAFSNVVNGVTKGKQTLEKVILSEKIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EEC--TTTTEEEETTEEEECTTCCC-CBCTTCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccC--HHHhcccccccccccCCCcEEECCccccchhHHHhhc
Confidence 46899999999998832222 23344566777766 345 567888 999999999985 34 457899
Q ss_pred cccCCEEecCCCCCCccchh-hhcCCCCcEeeccccc---cccccChhhhCCCcccc-eEeccccCCCchhhHHHhcCCC
Q 002863 571 LVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNLEYTF---RLSRISPQVISNLKMLR-VLRMFECGSFLDSLVEELLGLE 645 (873)
Q Consensus 571 L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~---~l~~l~~~~i~~l~~L~-~L~l~~~~~~~~~~~~~l~~l~ 645 (873)
|++|+.|++++|.+..++.. |..+.++..+.+..+. ....+....|..+.+|+ .+.+.....+.......-....
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 99999999999988888765 7777778877776531 23344445566777887 5555543322222222223456
Q ss_pred CCceeEEEEcch-hhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecccccccccc
Q 002863 646 HLNVLTITLHSN-HALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIR 724 (873)
Q Consensus 646 ~L~~L~l~~~~~-~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 724 (873)
++..+.+...-. .....+.. ...+|+.++|++|.+.......|.++++|+.|++.++ ++.+....+
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~----~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF------- 269 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRD----YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVF------- 269 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHH----HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-------
T ss_pred ccceEEEeeeecHHHHHHHHH----hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHh-------
Confidence 677776653211 11111111 1238999999999988888888999999999999874 666555555
Q ss_pred Ccccccccc-EEEEccccCCCcC--cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecc
Q 002863 725 EIHGFHSLQ-NVYISHSKLRQVT--WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLIL 796 (873)
Q Consensus 725 ~~~~l~~L~-~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 796 (873)
..+++|+ .|.+.+ +++.++ .+..+++|+.|+++++... .+.. ..+.++++|+.++.
T Consensus 270 --~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~------------~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 270 --SNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGD------------ELFGNGVPSKLIYK 328 (329)
T ss_dssp --TTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECT------------TTTCTTCCCCEEEC
T ss_pred --hCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccch------------hhhcCCcchhhhcc
Confidence 6788999 999998 677774 7889999999999887653 2211 36778899998864
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=1.1e-10 Score=114.25 Aligned_cols=118 Identities=25% Similarity=0.300 Sum_probs=103.6
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeeccccccccc-cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV-SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD 563 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~ 563 (873)
..+..++.+++.+|. ..++++++|++++|.+..++. ...+++|++|++++|.++.++ ...|.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~--~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS--NQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC--HhHccCCCCCCEEECCCCc
Confidence 456677788888875 345799999999999998874 367899999999999999998 7889999999999999995
Q ss_pred C----CccccCcccCCEEecCCCCCCccchh-hhcCCCCcEeecccc
Q 002863 564 L----PCEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNLEYT 605 (873)
Q Consensus 564 l----p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~ 605 (873)
| |..|..+++|++|+|++|.+..+|.. +..+++|++|++++|
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 4 55799999999999999999999975 889999999999998
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=1e-10 Score=114.46 Aligned_cols=121 Identities=24% Similarity=0.308 Sum_probs=104.0
Q ss_pred eEEEEcCCCcccCCccccccceEEEEeeccccccccc---cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCC
Q 002863 485 KFLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTV---SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSH 561 (873)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~ 561 (873)
..+..++.+++.+|. ....++++|++++|.+..++. ...+++|++|++++|.++.+. +..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE--PNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC--HhHcCCcccCCEEECCC
Confidence 356677888888875 345599999999999998875 467899999999999999987 67899999999999999
Q ss_pred CCC----CccccCcccCCEEecCCCCCCcc-chhhhcCCCCcEeecccccccc
Q 002863 562 SDL----PCEISNLVSLQYLDLSNSIPDRL-PLGLKYLVNLKCLNLEYTFRLS 609 (873)
Q Consensus 562 n~l----p~~i~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~ 609 (873)
|.| |..+.++++|++|+|++|.+..+ |..+..+++|++|++++| .+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-PFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC-CBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC-Ccc
Confidence 955 55689999999999999999877 667999999999999999 444
No 145
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=4e-11 Score=115.59 Aligned_cols=120 Identities=21% Similarity=0.243 Sum_probs=106.3
Q ss_pred ceEEEEcCCCcccCCcccccc-ceEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC
Q 002863 484 EKFLVLTGAGLTEAPSVGMWK-DVTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS 562 (873)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n 562 (873)
-..+..+++.++.++....+. +++.|++++|.+..++....+++|++|++++|.++.++ +..|..+++|++|+|++|
T Consensus 21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG--EGLDQALPDLTELILTNN 98 (176)
T ss_dssp CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC--SCHHHHCTTCCEEECCSC
T ss_pred ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC--cchhhcCCCCCEEECCCC
Confidence 456777888888777666655 99999999999999877788999999999999999888 677899999999999999
Q ss_pred CC---Cc--cccCcccCCEEecCCCCCCccchh----hhcCCCCcEeecccc
Q 002863 563 DL---PC--EISNLVSLQYLDLSNSIPDRLPLG----LKYLVNLKCLNLEYT 605 (873)
Q Consensus 563 ~l---p~--~i~~L~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~L~~~ 605 (873)
.+ |. .++.+++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 99 ~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 99 SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 44 65 788999999999999999999985 999999999999998
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.14 E-value=4.9e-10 Score=122.64 Aligned_cols=218 Identities=14% Similarity=0.128 Sum_probs=123.1
Q ss_pred cccEEEecCCccccCCCCchhhhcCCcceEEecCCC--CC-CccccCcccCCEEecCCCCCCccchhhhcCCCCcEeecc
Q 002863 527 RLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS--DL-PCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLE 603 (873)
Q Consensus 527 ~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n--~l-p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 603 (873)
+|+.+.+..+ ++.+. ..+|.++ +|+.+.+.++ .+ +..|.++.+|+.++|++|.+..+|.....+.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~--~~aF~~~-~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIG--DMAFFNS-TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEEC--TTTTTTC-CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEEC--HHhcCCC-CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 5666666555 55665 5566664 4777777654 33 345666777777777777777776654445677777776
Q ss_pred ccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCC
Q 002863 604 YTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCR 683 (873)
Q Consensus 604 ~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~ 683 (873)
. .++.++..+|.++++|+.+.+..+ ........+.+ . +|+.+.+.+ .
T Consensus 212 ~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~---------------------------~L~~i~lp~-~ 258 (401)
T 4fdw_A 212 V--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-S---------------------------GITTVKLPN-G 258 (401)
T ss_dssp T--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-C---------------------------CCSEEEEET-T
T ss_pred C--chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-C---------------------------CccEEEeCC-C
Confidence 4 366666666777777777766542 11111111222 2 455555532 2
Q ss_pred CCCccccccccccccceEEeecCCCC----cceeeccccccccccCccccccccEEEEccccCCCcC--cccccCCCcEE
Q 002863 684 LEPFTIFSLASLRHLQTLHLVECNDL----EDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQVT--WLILAPNLKHL 757 (873)
Q Consensus 684 ~~~~~~~~l~~l~~L~~L~l~~~~~l----~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~--~l~~l~~L~~L 757 (873)
+.......|.++++|+.+.+.++... ..+.... +..+++|+.+.|.+ +++.++ .+..+++|+.|
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a---------F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC---------LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT---------TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH---------hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEE
Confidence 33344446667777777777653211 1122222 25667777777774 355553 56667777777
Q ss_pred eeccCccchhhcccCcccccccccccccccccccceecccCccccccccc
Q 002863 758 EVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICS 807 (873)
Q Consensus 758 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~ 807 (873)
.|..+ ++.+.. ..+..+ +|+.+.+.+ +.+..+..
T Consensus 329 ~lp~~--l~~I~~------------~aF~~~-~L~~l~l~~-n~~~~l~~ 362 (401)
T 4fdw_A 329 TIPAN--VTQINF------------SAFNNT-GIKEVKVEG-TTPPQVFE 362 (401)
T ss_dssp EECTT--CCEECT------------TSSSSS-CCCEEEECC-SSCCBCCC
T ss_pred EECcc--ccEEcH------------HhCCCC-CCCEEEEcC-CCCccccc
Confidence 77544 222211 245556 777777776 34555443
No 147
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.13 E-value=4.9e-10 Score=112.65 Aligned_cols=184 Identities=14% Similarity=0.076 Sum_probs=115.5
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCc-eEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD-FVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
..++|++..++.+.+++.....+.+.|+|++|+||||+|+.+++.. .. ..+. ..+.+..+.......+...+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL-FG-ENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH-HG-GGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-hc-cccccceEEeccccccChHHHHHHHHHHhc
Confidence 4589999999999999987665568999999999999999998864 11 1111 2344444443333333222221111
Q ss_pred CCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccchhh-hhc-cccccce
Q 002863 223 LFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTREFEV-CGQ-MEAHRSF 298 (873)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~~v-~~~-~~~~~~~ 298 (873)
... .-.+++.+||+||++... ..+.+...+... ..+.++|+||+...- ... ......+
T Consensus 95 ~~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 95 TAP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMY-SKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp SCC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ccC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 100 012578899999997642 233333333322 456788888876532 111 1223478
Q ss_pred eeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHH
Q 002863 299 KVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGR 350 (873)
Q Consensus 299 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 350 (873)
.+.+++.++..+++.+.+....... -++....+++.++|.|..+..+..
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999998875322111 145678899999999986554433
No 148
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=1e-10 Score=134.15 Aligned_cols=97 Identities=23% Similarity=0.242 Sum_probs=53.4
Q ss_pred ccEEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccc
Q 002863 528 LLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEY 604 (873)
Q Consensus 528 L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 604 (873)
|++|++++|.++.+| . |..+++|++|+|++| .+|..++++++|++|+|++|.+..+| .++.+++|++|+|++
T Consensus 443 L~~L~Ls~n~l~~lp--~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTVLC--H--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSSCC--C--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCCCc--C--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 555555555555544 2 455555555555555 34555555555555555555555555 555555555555555
Q ss_pred cccccccC-hhhhCCCcccceEecccc
Q 002863 605 TFRLSRIS-PQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 605 ~~~l~~l~-~~~i~~l~~L~~L~l~~~ 630 (873)
| .++.++ |..++.+++|++|++++|
T Consensus 518 N-~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 518 N-RLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp S-CCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred C-CCCCCCCcHHHhcCCCCCEEEecCC
Confidence 5 555553 333555555555555553
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.11 E-value=3.2e-10 Score=109.33 Aligned_cols=121 Identities=25% Similarity=0.337 Sum_probs=102.3
Q ss_pred EEEEcCCCcccCCccccccceEEEEeecccccccccc--CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC
Q 002863 486 FLVLTGAGLTEAPSVGMWKDVTRMSLMDNKIKRLTVS--PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD 563 (873)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~ 563 (873)
.+..++.+++.+|. ..++++++|++++|.+..++.. ..+++|++|++++|.++.++ ...|..+++|++|+|++|.
T Consensus 11 ~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP--DGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC--hhHccCCCccCEEECCCCC
Confidence 35566777777763 4557999999999999988763 67899999999999999988 7778999999999999994
Q ss_pred C---C-ccccCcccCCEEecCCCCCCccchh-hhcCCCCcEeeccccccccc
Q 002863 564 L---P-CEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNLEYTFRLSR 610 (873)
Q Consensus 564 l---p-~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~ 610 (873)
+ | ..+..+++|++|++++|.+..+|.. +..+++|++|++++| .+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~~ 138 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWDC 138 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC-Ceec
Confidence 4 4 3478999999999999999999987 588999999999999 5544
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.05 E-value=2.9e-09 Score=116.47 Aligned_cols=258 Identities=14% Similarity=0.138 Sum_probs=169.6
Q ss_pred CCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC--CC-CccccCcccCCEEecCCCCCCccc-hhhhcCCCCcEe
Q 002863 525 SPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS--DL-PCEISNLVSLQYLDLSNSIPDRLP-LGLKYLVNLKCL 600 (873)
Q Consensus 525 ~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n--~l-p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L 600 (873)
+..++.+.+..+ ++.++ ...|.++ +|+.+.|..+ .| ...|.+ .+|+.+.+.+ .+..++ ..|.+|++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~--~~aF~~~-~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIP--KDAFRNS-QIAKVVLNEGLKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEEC--TTTTTTC-CCSEEECCTTCCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEeh--HhhcccC-CccEEEeCCCccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 466777777654 66777 6778886 7999999877 44 334555 4799999986 667776 458889999999
Q ss_pred eccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEec
Q 002863 601 NLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLR 680 (873)
Q Consensus 601 ~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~ 680 (873)
++++| .++.++..+|. +.+|+.+.+..+ ........+.++++|+.+.+ .
T Consensus 186 ~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l---------------------------~ 234 (401)
T 4fdw_A 186 DLSKT-KITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI---------------------------P 234 (401)
T ss_dssp ECTTS-CCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC---------------------------C
T ss_pred ecCCC-cceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEec---------------------------C
Confidence 99888 88899888776 588998888642 22223344555555555554 3
Q ss_pred CCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCC-----CcC--cccccCC
Q 002863 681 GCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLR-----QVT--WLILAPN 753 (873)
Q Consensus 681 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~l~--~l~~l~~ 753 (873)
.+ +.......|.+ .+|+.+.|. +.++.+....+ ..+++|+.+.+.++.+. .++ .+..+++
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~lp--~~i~~I~~~aF---------~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKLP--NGVTNIASRAF---------YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK 301 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEEE--TTCCEECTTTT---------TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred CC-ccCcccccccc-CCccEEEeC--CCccEEChhHh---------hCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence 22 22223335555 689999995 34555444444 67899999999988554 343 6788999
Q ss_pred CcEEeeccCccchhhcccCcccccccccccccccccccceecccCcccccccccCC-CCCCCccEEeEccCcCcccCcCC
Q 002863 754 LKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSNA-LPFPRLKEMSVHECSKLRQLALD 832 (873)
Q Consensus 754 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~-~~~~~L~~L~l~~c~~L~~L~l~ 832 (873)
|+.+.|.++ ++.+.. ..+.++++|+.+.|.. +++.+.... ..+ +|+.+.+.+. .+..++-+
T Consensus 302 L~~l~l~~~--i~~I~~------------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~ 363 (401)
T 4fdw_A 302 LARFEIPES--IRILGQ------------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEK 363 (401)
T ss_dssp CCEECCCTT--CCEECT------------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCS
T ss_pred CCeEEeCCc--eEEEhh------------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccc
Confidence 999999853 333322 3567789999999954 477776543 335 7888888764 44444433
Q ss_pred CcCCC-CcceEEechHHHh
Q 002863 833 CNCGL-ERKIIIEAEERWW 850 (873)
Q Consensus 833 ~n~~l-~~l~~~~~~~~~~ 850 (873)
.-..+ ..+..++.+.+..
T Consensus 364 ~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SCCCSCTTCCEEEECGGGH
T ss_pred cccCCCCCccEEEeCHHHH
Confidence 22222 2344555444433
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=5.5e-10 Score=107.08 Aligned_cols=96 Identities=21% Similarity=0.263 Sum_probs=61.0
Q ss_pred cEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCCCCCCccchh-hhcCCCCcEeecc
Q 002863 529 LTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNLE 603 (873)
Q Consensus 529 ~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~ 603 (873)
+.+++++|.++.+| ..+ .++|++|+|++|.| |..|+++++|++|+|++|.+..+|.. |.++++|++|+|+
T Consensus 15 ~~l~~~~n~l~~iP--~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLASVP--AGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCSSCC--SCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCCccC--CCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 45566666665555 222 25666666666632 44566666777777777777676655 4667777777777
Q ss_pred ccccccccChhhhCCCcccceEecccc
Q 002863 604 YTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 604 ~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
+| .++.+|+..|..+++|++|++++|
T Consensus 90 ~N-~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 90 DN-HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SS-CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CC-ccceeCHHHhccccCCCEEEeCCC
Confidence 77 667777666677777777777664
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=5.4e-10 Score=106.72 Aligned_cols=97 Identities=25% Similarity=0.286 Sum_probs=66.8
Q ss_pred ccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCCCCCCccchh-hhcCCCCcEeec
Q 002863 528 LLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSNSIPDRLPLG-LKYLVNLKCLNL 602 (873)
Q Consensus 528 L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L 602 (873)
.+.+++++|.++.+| ... .++|++|+|++|.| |..|.++++|++|+|++|.+..+|.. |..+++|++|+|
T Consensus 11 ~~~l~~s~n~l~~ip--~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLASVP--TGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCSSCC--SCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccC--ccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 356666666666665 222 36667777777733 45567777777777777777777765 467777777777
Q ss_pred cccccccccChhhhCCCcccceEecccc
Q 002863 603 EYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 603 ~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
++| .++.+|+..|.++++|++|++++|
T Consensus 86 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 86 NDN-QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 777 677777766777777777777764
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=6.7e-10 Score=106.46 Aligned_cols=103 Identities=18% Similarity=0.268 Sum_probs=89.0
Q ss_pred EEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCC---CCcc-ccCcccCCEEecCCC
Q 002863 507 TRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSD---LPCE-ISNLVSLQYLDLSNS 582 (873)
Q Consensus 507 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~---lp~~-i~~L~~L~~L~L~~~ 582 (873)
+.+++++|.+..+|... .++|+.|++++|.++.++ +..|.++++|++|+|++|. +|.. +.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLE--PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccC--HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57888889888887644 389999999999999998 6789999999999999994 4554 689999999999999
Q ss_pred CCCccchh-hhcCCCCcEeeccccccccccCh
Q 002863 583 IPDRLPLG-LKYLVNLKCLNLEYTFRLSRISP 613 (873)
Q Consensus 583 ~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~~ 613 (873)
.+..+|.. +..+++|++|+|++| .+...+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNN-PWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS-CBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCC-Ccccccc
Confidence 99999986 899999999999999 6665554
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.04 E-value=9.7e-12 Score=122.53 Aligned_cols=102 Identities=22% Similarity=0.316 Sum_probs=68.5
Q ss_pred hhhcCCcceEEecCCC---CCCccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccc
Q 002863 547 FFKSMASLRVLKLSHS---DLPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLR 623 (873)
Q Consensus 547 ~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~ 623 (873)
.|..+++|++|+|++| .+| .++++++|++|++++|.+..+|..+..+++|++|++++| .++.+|. ++.+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~--~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG--IEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHH--HHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCc--cccCCCCC
Confidence 5677777777777777 455 677777777777777777777776777777777777777 6666652 67777777
Q ss_pred eEeccccCCCch-hhHHHhcCCCCCceeEEE
Q 002863 624 VLRMFECGSFLD-SLVEELLGLEHLNVLTIT 653 (873)
Q Consensus 624 ~L~l~~~~~~~~-~~~~~l~~l~~L~~L~l~ 653 (873)
+|++++|. +.. ..+..+..+++|+.|+++
T Consensus 119 ~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 119 VLYMSNNK-ITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp EEEESEEE-CCCHHHHHHHTTTTTCSEEEEC
T ss_pred EEECCCCc-CCchhHHHHHhcCCCCCEEEec
Confidence 77777653 222 222456666666666663
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=1.1e-11 Score=122.22 Aligned_cols=130 Identities=21% Similarity=0.242 Sum_probs=100.8
Q ss_pred cccccc-ccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC---CCCccccCcccCCEEecCCCCCCccchh
Q 002863 515 KIKRLT-VSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS---DLPCEISNLVSLQYLDLSNSIPDRLPLG 590 (873)
Q Consensus 515 ~~~~l~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n---~lp~~i~~L~~L~~L~L~~~~i~~lp~~ 590 (873)
.++.++ ....+++|++|++++|.++.++ .+..+++|++|++++| .+|..+..+++|++|++++|.+..+| .
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~----~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~ 110 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS----SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-G 110 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC----CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-H
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc----ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-c
Confidence 344444 2356789999999999988865 4788999999999999 66877888899999999999999887 6
Q ss_pred hhcCCCCcEeeccccccccccCh-hhhCCCcccceEeccccCCCchhhH----------HHhcCCCCCceeE
Q 002863 591 LKYLVNLKCLNLEYTFRLSRISP-QVISNLKMLRVLRMFECGSFLDSLV----------EELLGLEHLNVLT 651 (873)
Q Consensus 591 i~~l~~L~~L~L~~~~~l~~l~~-~~i~~l~~L~~L~l~~~~~~~~~~~----------~~l~~l~~L~~L~ 651 (873)
+..+++|++|++++| .++.++. ..+..+++|++|++.+|. +....+ ..+..+++|+.|+
T Consensus 111 ~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 889999999999999 7887765 458899999999998862 222211 2256677777665
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=8.4e-10 Score=105.38 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=88.2
Q ss_pred eEEEEeeccccccccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC---Cc-cccCcccCCEEecCC
Q 002863 506 VTRMSLMDNKIKRLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL---PC-EISNLVSLQYLDLSN 581 (873)
Q Consensus 506 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l---p~-~i~~L~~L~~L~L~~ 581 (873)
.+.+++++|.+..+|... .++|++|++++|.++.++ +..|.++++|++|+|++|.| |. .+.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccC--hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 357888999998887644 489999999999999998 67899999999999999944 44 468999999999999
Q ss_pred CCCCccchh-hhcCCCCcEeeccccccccccC
Q 002863 582 SIPDRLPLG-LKYLVNLKCLNLEYTFRLSRIS 612 (873)
Q Consensus 582 ~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l~ 612 (873)
|.+..+|.. +..+++|++|+|++| .+...+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNN-PWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCC-CCCCCc
Confidence 999999875 899999999999999 555433
No 157
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.95 E-value=2.9e-09 Score=113.76 Aligned_cols=185 Identities=16% Similarity=0.164 Sum_probs=115.0
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCc-eEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD-FVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
+.++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ...+. ..+++..+.......+. .+++.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDVVR-NQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHHHH-THHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHHHH-HHHHHHH
Confidence 45899999999999999877655599999999999999999988751 11111 23444444332322221 1111111
Q ss_pred CCCccccccCHHHHHHHHHHHh-ccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEccchh-hhhc-cccccc
Q 002863 223 LFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTREFE-VCGQ-MEAHRS 297 (873)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~-v~~~-~~~~~~ 297 (873)
... ..+ .+++.++|+||++.. ..++.+...+... ..++++|+||+... +... ......
T Consensus 98 ~~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 98 QKK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELY-SNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HBC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT-TTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred hcc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc-CCCceEEEEeCChhhchhHHHhhceE
Confidence 000 001 346889999999763 2334443333332 45678888886643 2111 123457
Q ss_pred eeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh-HHHHHHHH
Q 002863 298 FKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPL-ALITVGRA 351 (873)
Q Consensus 298 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~~ 351 (873)
+++.+++.++..+++...+....... -++....|++.|+|.|. |+..+...
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDVKY---TNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 89999999999999998765322111 14567889999999995 45555443
No 158
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.88 E-value=5.3e-08 Score=103.88 Aligned_cols=272 Identities=14% Similarity=0.070 Sum_probs=141.5
Q ss_pred CcccchhHHHHHHHHHHhc-----CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLME-----EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIA 218 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 218 (873)
+.++|++..++.+..++.. .....+.|+|++|+||||+|+.+++.. ... ..++.++......++...+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~~l- 84 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAAIL- 84 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHHHH-
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHHHH-
Confidence 4689999999888887752 244678899999999999999999876 222 2344433322222221111
Q ss_pred HHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccc--cccccccCC---------CC--------CCCCcEE
Q 002863 219 KKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD--LDQVGLPIP---------SR--------TSVSNKV 279 (873)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~~~l~---------~~--------~~~gs~i 279 (873)
... ..++.+|+|||+..... ...+...+. .. ...+.++
T Consensus 85 ----------------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 85 ----------------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp ----------------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred ----------------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 000 13566888888865321 111110000 00 0123466
Q ss_pred EEEccchh-hhhcc-c-cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHhcC-
Q 002863 280 VFTTREFE-VCGQM-E-AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAMASR- 355 (873)
Q Consensus 280 ivTtR~~~-v~~~~-~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~- 355 (873)
|.||.... +...+ . ....+.+.+++.++..+++.+.+....... -++....+++.++|.|-.+..+...+...
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI---TEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 76666432 21111 1 125789999999999999998876443221 24667899999999998887766554321
Q ss_pred -------CChHHHHHHHHHHHchhcccCCchhHHHHHhhhccccCCcchhHHHHhhhccCCCCccccHHHHH----HHHH
Q 002863 356 -------KTPREWEHAIEVLRSSASKFAGMEKRVFSRLKFSFDFLPSDATRFCLLYCTLFPEDYRISIEDLI----DCWI 424 (873)
Q Consensus 356 -------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~Li----~~W~ 424 (873)
-+......+...+..........+..+...+.-.|..=|. ....+-..+++ ++..+- ++-+
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~-~~~~~a~~lgi-------~~~tl~~~l~~~~i 290 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPV-GLATLATALSE-------DPGTLEEVHEPYLI 290 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCC-CHHHHHHHTTS-------CHHHHHHHTHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCc-hHHHHHHHhCC-------CHHHHHHHHhHHHH
Confidence 1233343333322211111111111222222222222121 12223323322 233322 2345
Q ss_pred HcCCccCC-ChhhHHHHHHHHHH-HHHHcccccc
Q 002863 425 CEGFLDDH-DGIEARNQGYSLIR-NLLHACLLEE 456 (873)
Q Consensus 425 aeg~i~~~-~~~~~~~~~~~~l~-~L~~~~ll~~ 456 (873)
..|++... .+....+.|..+++ ++.+++++|+
T Consensus 291 ~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 291 RQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 57888643 34667788888887 8888888875
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=1.4e-08 Score=108.53 Aligned_cols=186 Identities=16% Similarity=0.119 Sum_probs=114.3
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCC-ceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF-DFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
+.++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++... . ..+ ...+.+..+.......+...+.....
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF-G-ENWRHNFLELNASDERGINVIREKVKEFAR 102 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH-G-GGHHHHEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc-C-CcccCceEEeeccccCchHHHHHHHHHHHh
Confidence 45899999999999999877666699999999999999999998751 1 111 12333443332111111111111000
Q ss_pred CCCccccccCHHHHHHHHHHHhccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEccchhh-hhc-cccccce
Q 002863 223 LFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTREFEV-CGQ-MEAHRSF 298 (873)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~v-~~~-~~~~~~~ 298 (873)
.. ....+++.++|+||++.. .....+...+... ..++++|+||....- ... ......+
T Consensus 103 ~~-----------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 103 TK-----------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMF-SSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp SC-----------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred hC-----------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-CCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 00 001256889999999764 2333343333322 456788888876432 111 1123478
Q ss_pred eeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHHHHH
Q 002863 299 KVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVGRAM 352 (873)
Q Consensus 299 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 352 (873)
.+.+++.++...++...+.......+ ++....|++.++|.|..+..+...+
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 99999999999999988754332111 4567889999999998665554443
No 160
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.9e-07 Score=97.00 Aligned_cols=169 Identities=10% Similarity=0.053 Sum_probs=104.8
Q ss_pred cccchhHHHHHHHHHHhc----CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCC-----CCceEEEEEeCCcccHHHHHH
Q 002863 145 TVVGLQLTFDRVWRCLME----EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPN-----HFDFVIWVVVSRDLQLEKIQE 215 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----~f~~~~wv~~s~~~~~~~~~~ 215 (873)
.+.||+++++++...|.. +..+.+.|+|++|+|||++|+.|++....... .| ..+.|.+....+...+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHH
Confidence 378999999999887753 56778899999999999999999988722111 22 356777777778889999
Q ss_pred HHHHHhCCCCccccccCHHHHHHHHHHHh---ccCCeEEEEeccccccccccccccC--CCCCCCCcEEEEEccchhh--
Q 002863 216 IIAKKIGLFNESWKNKSMQEKAQQIFNIL---SKKKFVLLLDDMWELVDLDQVGLPI--PSRTSVSNKVVFTTREFEV-- 288 (873)
Q Consensus 216 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~l--~~~~~~gs~iivTtR~~~v-- 288 (873)
.|++++..... ......+....+...+ .++++++|||+++...+-+-+...+ +........||.++...+.
T Consensus 100 ~I~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 100 KIWFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 99999854321 1112223334444443 4568999999997643211111111 1110112234444443222
Q ss_pred ---h----hccccccceeeccCChhhhHHHHHHHhc
Q 002863 289 ---C----GQMEAHRSFKVECLRYDDAWKLFELKVG 317 (873)
Q Consensus 289 ---~----~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 317 (873)
. ..+ ....+.+.+++.+|-.+++.+++.
T Consensus 178 ~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 178 EQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 111 124689999999999999998864
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=4.1e-08 Score=105.87 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=46.0
Q ss_pred EecCC-ccccCCCCchhhhcCCcceEEecCC-CCC----CccccCcccCCEEecCCCCCCccch-hhhcCCCCcEeeccc
Q 002863 532 FLNSN-YFKNDKVNYHFFKSMASLRVLKLSH-SDL----PCEISNLVSLQYLDLSNSIPDRLPL-GLKYLVNLKCLNLEY 604 (873)
Q Consensus 532 ~l~~n-~l~~~~~~~~~~~~l~~Lr~L~L~~-n~l----p~~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~ 604 (873)
+++++ .++.+| . +..+++|++|+|++ |.| |..|++|++|++|+|++|.+..+|. .|.+|++|++|+|++
T Consensus 14 ~~~~~n~l~~ip--~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 14 RCTRDGALDSLH--H--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp ECCSSCCCTTTT--T--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EcCCCCCCCccC--C--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 44444 444444 2 44455555555553 422 2345555555555555555555543 245555555555555
Q ss_pred cccccccChhhhCCCcccceEecccc
Q 002863 605 TFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 605 ~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
| .++.+|+..+..++ |+.|++.+|
T Consensus 90 N-~l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp S-CCSCCCSTTTCSCC-CCEEECCSS
T ss_pred C-ccceeCHHHcccCC-ceEEEeeCC
Confidence 5 55555554444343 555555543
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=4.5e-08 Score=105.56 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=86.1
Q ss_pred EEEeecc-ccccccccCCCCcccEEEecC-CccccCCCCchhhhcCCcceEEecCCCCC----CccccCcccCCEEecCC
Q 002863 508 RMSLMDN-KIKRLTVSPTSPRLLTLFLNS-NYFKNDKVNYHFFKSMASLRVLKLSHSDL----PCEISNLVSLQYLDLSN 581 (873)
Q Consensus 508 ~l~l~~~-~~~~l~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l----p~~i~~L~~L~~L~L~~ 581 (873)
.++.+++ .+..+|....+++|+.|+|++ |.++.++ +..|.++++|++|+|++|.| |..|++|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC--GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcC--hhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577777 888888877788999999996 9999998 78899999999999999965 66789999999999999
Q ss_pred CCCCccchhhhcCCCCcEeeccccccccc
Q 002863 582 SIPDRLPLGLKYLVNLKCLNLEYTFRLSR 610 (873)
Q Consensus 582 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~ 610 (873)
|.+..+|..+.....|++|+|.+| .+..
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N-~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGN-PLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSS-CCCC
T ss_pred CccceeCHHHcccCCceEEEeeCC-CccC
Confidence 999999987555545999999998 5553
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.65 E-value=4.8e-07 Score=99.22 Aligned_cols=202 Identities=11% Similarity=0.074 Sum_probs=91.0
Q ss_pred hhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCC
Q 002863 590 GLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRF 669 (873)
Q Consensus 590 ~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~ 669 (873)
.|.++++|+.+.+..+ +..++..+|..+.+|+.+.+..+ ........+.++..|+.+.+... ...+.. ...
T Consensus 157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~----~~~i~~-~~~ 227 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS----LYYLGD-FAL 227 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT----CCEECT-TTT
T ss_pred hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC----ceEeeh-hhc
Confidence 3566677777777543 45566666677777777666542 11112233444445544433100 000000 111
Q ss_pred ccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeecccccccc------------ccCccccccccEEEE
Q 002863 670 QSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKK------------IREIHGFHSLQNVYI 737 (873)
Q Consensus 670 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~------------~~~~~~l~~L~~L~L 737 (873)
....|+.+.+... ........+..+..|+.+.+..+ ...+....+..... -..+..+.+|+.+.+
T Consensus 228 ~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 228 SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKL 304 (394)
T ss_dssp TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEE
T ss_pred ccCCCceEEECCC-ceecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeecccccccccccccccc
Confidence 1124555554332 11122223444555555555431 11111111100000 011245667777777
Q ss_pred ccccCCCcC--cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcccccccccC-CCCCCC
Q 002863 738 SHSKLRQVT--WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSN-ALPFPR 814 (873)
Q Consensus 738 ~~~~l~~l~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~ 814 (873)
..+ ++.++ .+..+++|+.+.|.++ ++.+.. ..+.++.+|+.+.|.. +++.+... ...+++
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~------------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGK------------RSFRGCTSLSNINFPL--SLRKIGANAFQGCIN 367 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT--CCEECT------------TTTTTCTTCCEECCCT--TCCEECTTTBTTCTT
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc--ccEEhH------------HhccCCCCCCEEEECc--cccEehHHHhhCCCC
Confidence 654 44442 4566777777777543 222211 2455667777777743 25555432 222344
Q ss_pred ccEEeE
Q 002863 815 LKEMSV 820 (873)
Q Consensus 815 L~~L~l 820 (873)
|+.+.+
T Consensus 368 L~~i~l 373 (394)
T 4fs7_A 368 LKKVEL 373 (394)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 554444
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.60 E-value=2.1e-07 Score=98.90 Aligned_cols=180 Identities=13% Similarity=0.101 Sum_probs=111.9
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCc-eEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD-FVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
+.++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++.. . ...+. ..+.+..+.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l-~-~~~~~~~~~~~~~~~~~~~~~---------- 84 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL-F-GENWRDNFIEMNASDERGIDV---------- 84 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH-H-TTCHHHHCEEEETTSTTCTTT----------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh-c-CCcccCCeEEEeCccccChHH----------
Confidence 4589999999999998877665558999999999999999998875 1 11111 123334333211100
Q ss_pred CCCccccccCHHHHHHHHHHH--h-ccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEEEccchh-hhhc-cccc
Q 002863 223 LFNESWKNKSMQEKAQQIFNI--L-SKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTREFE-VCGQ-MEAH 295 (873)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~-v~~~-~~~~ 295 (873)
..+........ + .+++.++|+||++.. ...+.+...+... ..+.++|+||.... +... ....
T Consensus 85 ----------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 85 ----------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-SKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp ----------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSS-SSSEEEEEEESCGGGSCHHHHTTC
T ss_pred ----------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhc-CCCCeEEEEeCChhhcchHHHhhC
Confidence 01111111101 1 256889999999754 2234444444433 45678888776543 2111 1233
Q ss_pred cceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002863 296 RSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVG 349 (873)
Q Consensus 296 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 349 (873)
..+++.+++.++...++.+.+....... -++....+++.++|.+..+....
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCB---CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 4789999999999999998875443211 14567888999999887655443
No 165
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.59 E-value=3.6e-07 Score=99.49 Aligned_cols=193 Identities=12% Similarity=0.131 Sum_probs=109.7
Q ss_pred CcccchhHHHHHHHHHHhcCC-cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEH-VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
+.++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++.. .....+.. ..+..... ...+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~~---~~~~~~~~----~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGITA---TPCGVCDN----CREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH-SCTTCSCS---SCCSSSHH----HHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCCC---CCCcccHH----HHHHhccCC
Confidence 458999999999999987654 3578899999999999999998876 22111100 00000000 111110000
Q ss_pred CCC---ccccccCHHHHHHHHHHHh-----ccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccchh-hhh-
Q 002863 223 LFN---ESWKNKSMQEKAQQIFNIL-----SKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTREFE-VCG- 290 (873)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~~-v~~- 290 (873)
... +.......+ ....+.+.+ .+++.++|+||++... ..+.+...+... ..+..+|++|.... +..
T Consensus 88 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~~l~~~ 165 (373)
T 1jr3_A 88 VDLIEIDAASRTKVE-DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQKLPVT 165 (373)
T ss_dssp SSCEEEETTCSCCSS-CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC-CSSEEEEEEESCGGGSCHH
T ss_pred CceEEecccccCCHH-HHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC-CCceEEEEEeCChHhCcHH
Confidence 000 000000001 112222222 3567899999997532 233333333322 34567777776432 211
Q ss_pred ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002863 291 QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVG 349 (873)
Q Consensus 291 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 349 (873)
.......+++.+++.++..+++.+.+....... -.+....|++.++|.|..+..+.
T Consensus 166 l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 166 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 112346789999999999999987764322111 14557889999999998776554
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.58 E-value=1.1e-08 Score=110.67 Aligned_cols=124 Identities=17% Similarity=0.151 Sum_probs=69.8
Q ss_pred ceEEEEeecccccccccc-------CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCCCc----cc-----
Q 002863 505 DVTRMSLMDNKIKRLTVS-------PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDLPC----EI----- 568 (873)
Q Consensus 505 ~l~~l~l~~~~~~~l~~~-------~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~lp~----~i----- 568 (873)
+++.|++++|.+...... ...++|++|+|++|.++.... ..++..+++|++|+|++|.+.+ .+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGL-RTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHH-HHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHH-HHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 566777777766542111 223577777777776643321 2233445667777777775522 11
Q ss_pred cCcccCCEEecCCCCCCc-----cchhhhcCCCCcEeeccccccccccC----hhhhCCCcccceEecccc
Q 002863 569 SNLVSLQYLDLSNSIPDR-----LPLGLKYLVNLKCLNLEYTFRLSRIS----PQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 569 ~~L~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~l~----~~~i~~l~~L~~L~l~~~ 630 (873)
...++|++|+|++|.+.. ++..+..+++|++|+|++| .++... ...+...++|++|++++|
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 234567777777776644 3444566667777777776 454322 123455566666666664
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.57 E-value=1.5e-08 Score=109.65 Aligned_cols=155 Identities=15% Similarity=0.075 Sum_probs=93.5
Q ss_pred CCcccEEEecCCccccCCCCchhhh-----cCCcceEEecCCCCCCc-----cccCcccCCEEecCCCCCCccch-----
Q 002863 525 SPRLLTLFLNSNYFKNDKVNYHFFK-----SMASLRVLKLSHSDLPC-----EISNLVSLQYLDLSNSIPDRLPL----- 589 (873)
Q Consensus 525 ~~~L~~L~l~~n~l~~~~~~~~~~~-----~l~~Lr~L~L~~n~lp~-----~i~~L~~L~~L~L~~~~i~~lp~----- 589 (873)
.+.|+.|++++|.++... ...+. ..++|++|+|++|.+.+ ....+++|++|+|++|.+.....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~--~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVK--CTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHH--HHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHH--HHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 467888888888876544 22232 23688888888886632 12346678888888887765432
Q ss_pred hh-hcCCCCcEeeccccccccccCh----hhhCCCcccceEeccccCCCchhhH----HHhcCCCCCceeEEEEcchhhH
Q 002863 590 GL-KYLVNLKCLNLEYTFRLSRISP----QVISNLKMLRVLRMFECGSFLDSLV----EELLGLEHLNVLTITLHSNHAL 660 (873)
Q Consensus 590 ~i-~~l~~L~~L~L~~~~~l~~l~~----~~i~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~l 660 (873)
.+ ...++|++|+|++| .++.... ..+..+++|++|++++|. +..... ..+...+
T Consensus 149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~--------------- 211 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNR--------------- 211 (372)
T ss_dssp HHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCS---------------
T ss_pred HHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCC---------------
Confidence 12 24577888888888 5654221 124667778888887753 332221 1222222
Q ss_pred HHhhccCCCccCCcceEEecCCCCCCccc----cccccccccceEEeecCCCCcc
Q 002863 661 QRLLSSSRFQSISIPSLCLRGCRLEPFTI----FSLASLRHLQTLHLVECNDLED 711 (873)
Q Consensus 661 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~l~~ 711 (873)
+|+.|+|++|.+..... ..+...++|++|+|++| .+++
T Consensus 212 ------------~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~ 253 (372)
T 3un9_A 212 ------------QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN-ELSS 253 (372)
T ss_dssp ------------CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred ------------CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCH
Confidence 57777777777654322 23445677888888874 4543
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.54 E-value=7.1e-08 Score=94.07 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=41.1
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.++||+++++++.+++.....+.+.|+|++|+||||+|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987666778899999999999999998875
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.44 E-value=3.7e-07 Score=92.53 Aligned_cols=173 Identities=9% Similarity=0.060 Sum_probs=100.9
Q ss_pred Ccccch---hHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHH
Q 002863 144 PTVVGL---QLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKK 220 (873)
Q Consensus 144 ~~~vgr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 220 (873)
++++|. +..++.+..+...+..+.+.|+|++|+||||+|+.+++.... . ...+.|+.++..... +.+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~-~--~~~~~~~~~~~~~~~------~~~- 97 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE-L--ERRSFYIPLGIHASI------STA- 97 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEEGGGGGGS------CGG-
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-c--CCeEEEEEHHHHHHH------HHH-
Confidence 346663 355566666665556678899999999999999999987621 1 234566665432110 000
Q ss_pred hCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccc----cccccccCCCCCC-CCcEEEEEccchh--------
Q 002863 221 IGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD----LDQVGLPIPSRTS-VSNKVVFTTREFE-------- 287 (873)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~l~~~~~-~gs~iivTtR~~~-------- 287 (873)
..+.+ .++.+||+||++.... .+.+...+..... ...++|+||+...
T Consensus 98 -------------------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 98 -------------------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp -------------------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred -------------------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 00011 3567999999975421 1222221111001 1224777776432
Q ss_pred -hhhccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002863 288 -VCGQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVG 349 (873)
Q Consensus 288 -v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 349 (873)
+...+.....+.+.+++.++..+++...+...... --++....+++.++|.+-.+..+.
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ---LPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC---CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHccCCHHHHHHHH
Confidence 11111223678999999999999999887533211 124667889999999876655443
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.43 E-value=2.1e-07 Score=99.72 Aligned_cols=92 Identities=24% Similarity=0.226 Sum_probs=54.1
Q ss_pred hhcCCcceEEecCCCCCCccccCcccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEec
Q 002863 548 FKSMASLRVLKLSHSDLPCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRM 627 (873)
Q Consensus 548 ~~~l~~Lr~L~L~~n~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l 627 (873)
...+++|+.|.+.++.... .+++......++..+..+++|+.|+|++|..+ .+++ + .+++|++|++
T Consensus 135 ~~~l~~L~~L~l~~~~~e~----------~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L 200 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEE----------QEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEI 200 (362)
T ss_dssp HHHHTTCSEEEECCCCTTT----------CCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEE
T ss_pred hhhcchhhheeecCcchhh----------cccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEE
Confidence 4466777777775542210 01111112345555677788888888877333 3443 3 3788888888
Q ss_pred cccCCCchhhHHHhc--CCCCCceeEEEE
Q 002863 628 FECGSFLDSLVEELL--GLEHLNVLTITL 654 (873)
Q Consensus 628 ~~~~~~~~~~~~~l~--~l~~L~~L~l~~ 654 (873)
..|. +.......+. .+++|+.|+++.
T Consensus 201 ~~~~-l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 201 ISGG-LPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp ECSB-CCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred ecCC-CChHHHHHHHHccCCCCcEEEEec
Confidence 7653 4444455554 678888888753
No 171
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.41 E-value=1.7e-06 Score=95.68 Aligned_cols=181 Identities=15% Similarity=0.150 Sum_probs=103.0
Q ss_pred ccc-chhHH--HHHHHHHHhcCC-cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHH
Q 002863 145 TVV-GLQLT--FDRVWRCLMEEH-VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKK 220 (873)
Q Consensus 145 ~~v-gr~~~--~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 220 (873)
.|+ |.... ...+........ ...+.|+|++|+||||||+.+++......... .++++.. ..+...+...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~-~v~~v~~------~~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL-RVMYITS------EKFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSS-CEEEEEH------HHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC-eEEEeeH------HHHHHHHHHH
Confidence 345 64432 333333333332 56789999999999999999998762110011 2344433 2333444443
Q ss_pred hCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccc----cccccccCCCCCCCCcEEEEEccchh---------
Q 002863 221 IGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD----LDQVGLPIPSRTSVSNKVVFTTREFE--------- 287 (873)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~l~~~~~~gs~iivTtR~~~--------- 287 (873)
+... .. ..+...+..++-+|++||++.... .+.+...+......|..||+||.+..
T Consensus 179 ~~~~-------~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 179 MKEG-------KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHTT-------CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHcc-------cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 3211 11 123333444678999999975432 12222222110034668888887631
Q ss_pred hhhccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHH
Q 002863 288 VCGQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALI 346 (873)
Q Consensus 288 v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 346 (873)
+...+.....+.+++++.++..+++.+.+.......++ +....|++.+.|.+-.+.
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHH
Confidence 22223334678999999999999999887533222232 346788899999875444
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.40 E-value=1.4e-06 Score=90.83 Aligned_cols=176 Identities=18% Similarity=0.212 Sum_probs=101.3
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccH
Q 002863 144 PTVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 210 (873)
++++|.++.++++.+.+.. ....-+.|+|++|+||||+|+.+++.. ... .+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHHH-
Confidence 4689999999999887642 244578899999999999999999876 222 22232221100
Q ss_pred HHHHHHHHHHhCCCCccccccCHHHHHHHHHH-HhccCCeEEEEecccccc------------c----cccccccCCC-C
Q 002863 211 EKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN-ILSKKKFVLLLDDMWELV------------D----LDQVGLPIPS-R 272 (873)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~-~ 272 (873)
.+.. ........+.. ....++.+|+|||++... . +..+...+.. .
T Consensus 90 ----------------~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 90 ----------------KFIG-EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp ----------------CSTT-HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred ----------------hccc-hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 0001 11122222222 234567899999996421 0 1111111110 1
Q ss_pred CCCCcEEEEEccchhhhhc-c----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCC-chhHHH
Q 002863 273 TSVSNKVVFTTREFEVCGQ-M----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGG-LPLALI 346 (873)
Q Consensus 273 ~~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~ 346 (873)
...+..||.||...+.... . .....+.++..+.++..++++..+.......... ...+++.+.| .|-.+.
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHH
Confidence 1345678888875533210 0 1234688999999999999998876544222223 4667777777 454444
Q ss_pred H
Q 002863 347 T 347 (873)
Q Consensus 347 ~ 347 (873)
.
T Consensus 229 ~ 229 (285)
T 3h4m_A 229 A 229 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 173
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=2e-06 Score=97.29 Aligned_cols=189 Identities=13% Similarity=0.088 Sum_probs=109.4
Q ss_pred CcccchhHHHHHHHHHHhc-----------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC
Q 002863 144 PTVVGLQLTFDRVWRCLME-----------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 206 (873)
.+++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++.. .+ .++.+.++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GY-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TC-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CC-CEEEEeCCC
Confidence 4689999999999999864 124689999999999999999999876 12 234455555
Q ss_pred cccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH--HhccCCeEEEEeccccccc-----cccccccCCCCCCCCcEE
Q 002863 207 DLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN--ILSKKKFVLLLDDMWELVD-----LDQVGLPIPSRTSVSNKV 279 (873)
Q Consensus 207 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~--~l~~k~~LlVlDdv~~~~~-----~~~~~~~l~~~~~~gs~i 279 (873)
......+ ...+....... +.......... ...+++.+||+|+++.... +..+...+.. .+..|
T Consensus 113 ~~~~~~~-~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~---~~~~i 182 (516)
T 1sxj_A 113 VRSKTLL-NAGVKNALDNM------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK---TSTPL 182 (516)
T ss_dssp CCCHHHH-HHTGGGGTTBC------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH---CSSCE
T ss_pred cchHHHH-HHHHHHHhccc------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh---cCCCE
Confidence 4433322 22222111000 00000000000 1135788999999975422 1222222211 23346
Q ss_pred EEEccchh---hhhccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCC-chhHHHHHHHH
Q 002863 280 VFTTREFE---VCGQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGG-LPLALITVGRA 351 (873)
Q Consensus 280 ivTtR~~~---v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~~ 351 (873)
|+++.+.. +.........+.+.+++.++..+.+.+.+.......++ +....|++.++| ++-++..+..+
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHTHH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 65554432 22222234568999999999999998877543322333 347789999999 55666665443
No 174
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.36 E-value=7.3e-06 Score=89.74 Aligned_cols=278 Identities=12% Similarity=0.088 Sum_probs=154.3
Q ss_pred CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC--CC-CccccCcccCCEEecCCCCCCccc-hhhhcCCCCc
Q 002863 523 PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS--DL-PCEISNLVSLQYLDLSNSIPDRLP-LGLKYLVNLK 598 (873)
Q Consensus 523 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n--~l-p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~ 598 (873)
..|.+|+.+.+..+ ++.+. ..+|.+|.+|+.++|..+ .+ ...+.++.+|+.+.+..+ +..++ ..|..+..+.
T Consensus 68 ~~c~~L~~i~lp~~-i~~I~--~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 68 QGCRKVTEIKIPST-VREIG--EFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTCTTEEEEECCTT-CCEEC--TTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred hCCCCceEEEeCCC-ccCcc--hhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 67889999999744 77787 788999999999999776 34 446778888888877654 33443 3355555444
Q ss_pred EeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEE
Q 002863 599 CLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLC 678 (873)
Q Consensus 599 ~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~ 678 (873)
..... .+..+...+|.++++|+.+.+.... .......+.++.+|+.+.+. . .+..+..........|+.+.
T Consensus 144 ~~~~~---~~~~i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~---~-~~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 144 ITIPE---GVTVIGDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLP---R-NLKIIRDYCFAECILLENME 214 (394)
T ss_dssp EECCT---TCCEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCC---T-TCCEECTTTTTTCTTCCBCC
T ss_pred cccCc---cccccchhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcC---C-CceEeCchhhccccccceee
Confidence 43333 3455667779999999999997532 22334456778888877763 1 13333333344444566665
Q ss_pred ecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCc--C----------
Q 002863 679 LRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQV--T---------- 746 (873)
Q Consensus 679 L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l--~---------- 746 (873)
+..+... .........+|+.+.+.. .++.+....+ ..+.+|+.+.+..+. ..+ .
T Consensus 215 ~~~~~~~--i~~~~~~~~~l~~i~ip~--~~~~i~~~~f---------~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~ 280 (394)
T 4fs7_A 215 FPNSLYY--LGDFALSKTGVKNIIIPD--SFTELGKSVF---------YGCTDLESISIQNNK-LRIGGSLFYNCSGLKK 280 (394)
T ss_dssp CCTTCCE--ECTTTTTTCCCCEEEECT--TCCEECSSTT---------TTCSSCCEEEECCTT-CEECSCTTTTCTTCCE
T ss_pred cCCCceE--eehhhcccCCCceEEECC--Cceecccccc---------cccccceeEEcCCCc-ceeeccccccccccce
Confidence 5544211 111233346788888754 2332222222 345556666655441 111 1
Q ss_pred -----------cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcccccccccC-CCCCCC
Q 002863 747 -----------WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSN-ALPFPR 814 (873)
Q Consensus 747 -----------~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~ 814 (873)
.+..+++|+.+.+.++ ++.+. ...+..+.+|+.+.|.+ .++.+... ...+.+
T Consensus 281 ~~~~~~~i~~~~F~~~~~L~~i~l~~~--i~~I~------------~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 281 VIYGSVIVPEKTFYGCSSLTEVKLLDS--VKFIG------------EEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTS 344 (394)
T ss_dssp EEECSSEECTTTTTTCTTCCEEEECTT--CCEEC------------TTTTTTCTTCCEECCCT--TCCEECTTTTTTCTT
T ss_pred eccCceeeccccccccccccccccccc--cceec------------hhhhcCCCCCCEEEeCC--cccEEhHHhccCCCC
Confidence 2334455555555432 11111 12456677888887743 35555432 223456
Q ss_pred ccEEeEccCcCcccCcCCCcCCCCcceEEec
Q 002863 815 LKEMSVHECSKLRQLALDCNCGLERKIIIEA 845 (873)
Q Consensus 815 L~~L~l~~c~~L~~L~l~~n~~l~~l~~~~~ 845 (873)
|+.+.+.. +++.++-..-..+.+|+.+..
T Consensus 345 L~~i~lp~--~l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 345 LSNINFPL--SLRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp CCEECCCT--TCCEECTTTBTTCTTCCEEEE
T ss_pred CCEEEECc--cccEehHHHhhCCCCCCEEEE
Confidence 66665532 244443322222344444443
No 175
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.32 E-value=7.7e-06 Score=89.55 Aligned_cols=275 Identities=12% Similarity=0.144 Sum_probs=120.9
Q ss_pred CCCCcccEEEecCCc---cccCCCCchhhhcCCcceEEecCCC--CC-CccccCcccCCEEecCCCCCCccc-hhhhcCC
Q 002863 523 PTSPRLLTLFLNSNY---FKNDKVNYHFFKSMASLRVLKLSHS--DL-PCEISNLVSLQYLDLSNSIPDRLP-LGLKYLV 595 (873)
Q Consensus 523 ~~~~~L~~L~l~~n~---l~~~~~~~~~~~~l~~Lr~L~L~~n--~l-p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~ 595 (873)
..|.+|+.+.+..|. ++.+. ..+|.+|.+|+.+.+..+ .+ ...+..+.+|+.+.+..+ +..++ ..+..+.
T Consensus 84 ~~C~~L~~i~~~~n~p~~l~~Ig--~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~ 160 (394)
T 4gt6_A 84 YNCTSLKRVTIQDNKPSCVKKIG--RQAFMFCSELTDIPILDSVTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCY 160 (394)
T ss_dssp TTCTTCCEEEEGGGCCCCCCEEC--TTTTTTCTTCCBCGGGTTCSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hCCccCceEeecCCCCCeeeEec--hhhchhcccceeeccCCccceehhhhhhhhcccccccccce-eeeecccceeccc
Confidence 455666666665542 44444 455666666666555544 22 234455666666666532 23333 2355566
Q ss_pred CCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEEEEcchhhHHHhhccC--------
Q 002863 596 NLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTITLHSNHALQRLLSSS-------- 667 (873)
Q Consensus 596 ~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~-------- 667 (873)
+|+.+.+..+ ++.+...+|.. .+|+.+.+.... .......+..+.++....................
T Consensus 161 ~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~--~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (394)
T 4gt6_A 161 SLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKV--TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL 235 (394)
T ss_dssp TCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTC--CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE
T ss_pred ccccccccce--eeEeccccccc-cceeEEEECCcc--cccccchhhhccccceecccccccccccceeecccccccccc
Confidence 6666666543 45555554533 456655554321 1111222334444443332111000000000000
Q ss_pred --CCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCc
Q 002863 668 --RFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQV 745 (873)
Q Consensus 668 --~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l 745 (873)
......+..+.+.. .........|..+..|+.+.+.. .+..+....+ ..+++|+.+.+.. .++.+
T Consensus 236 ~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~--~~~~I~~~aF---------~~c~~L~~i~l~~-~i~~I 302 (394)
T 4gt6_A 236 IRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPD--SVVSIGTGAF---------MNCPALQDIEFSS-RITEL 302 (394)
T ss_dssp EECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCT--TCCEECTTTT---------TTCTTCCEEECCT-TCCEE
T ss_pred cccccccccceEEcCC-cceEcccceeeecccccEEeccc--ccceecCccc---------ccccccccccCCC-ccccc
Confidence 00000111222111 01111223466677777777754 2222222222 4566777777753 35554
Q ss_pred C--cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceecccCcccccccccC-CCCCCCccEEeEc-
Q 002863 746 T--WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILKGLNNLKNICSN-ALPFPRLKEMSVH- 821 (873)
Q Consensus 746 ~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~L~~L~l~- 821 (873)
+ .+..+++|+.+.|..+ ++.+.. ..+.++.+|+.+.|.. +++.+... ...+++|+.+.+.
T Consensus 303 ~~~aF~~c~~L~~i~lp~~--v~~I~~------------~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 303 PESVFAGCISLKSIDIPEG--ITQILD------------DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECT------------TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred CceeecCCCCcCEEEeCCc--ccEehH------------hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 3 5666777777777543 222211 2455666777776642 34444332 2234555555543
Q ss_pred ---------cCcCcccCcCCCc
Q 002863 822 ---------ECSKLRQLALDCN 834 (873)
Q Consensus 822 ---------~c~~L~~L~l~~n 834 (873)
.|..|+.+.+..+
T Consensus 367 ~~~~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 367 SRSQWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CHHHHHTCBCCCCC--------
T ss_pred ceeehhhhhccCCCCEEEeCCC
Confidence 4455555554443
No 176
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=4.4e-07 Score=85.12 Aligned_cols=89 Identities=16% Similarity=0.207 Sum_probs=50.4
Q ss_pred CcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccc-cCCC--cCccc
Q 002863 673 SIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHS-KLRQ--VTWLI 749 (873)
Q Consensus 673 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~--l~~l~ 749 (873)
.|++|++++|.++......+..+++|++|+|++|..+++.....+.... ...++|++|+|++| ++++ +..+.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~-----~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE-----NLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCH-----HHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcc-----cccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 5667777777665555455566677777777776666654333331000 01235666666666 5655 33455
Q ss_pred ccCCCcEEeeccCccch
Q 002863 750 LAPNLKHLEVQNCPYME 766 (873)
Q Consensus 750 ~l~~L~~L~L~~~~~~~ 766 (873)
.+++|++|+|++|+.++
T Consensus 137 ~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GCTTCCEEEEESCTTCC
T ss_pred cCCCCCEEECCCCCCCC
Confidence 56666666666665443
No 177
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=2e-06 Score=92.68 Aligned_cols=193 Identities=12% Similarity=0.133 Sum_probs=109.5
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccC-CCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDT-PNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
..++|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++..... ...+ .+..+..+.......+...+.....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVREKVKNFAR 115 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHTTHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHHHHHHHHhh
Confidence 4589999999999999887655558999999999999999998874100 0111 1233444433233322221111110
Q ss_pred CCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccchh-hhhc-cccccce
Q 002863 223 LFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTREFE-VCGQ-MEAHRSF 298 (873)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~~-v~~~-~~~~~~~ 298 (873)
.... ..... .....-.+++-+|++|++.... ....+...+... ....++|++|.... +... ......+
T Consensus 116 ~~~~--~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~-~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 116 LTVS--KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETY-SGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp SCCC--CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred hccc--ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc-CCCceEEEEeCchhhCcchhhccCceE
Confidence 0000 00000 0000112355699999986532 222333222222 33457777765432 2111 1123478
Q ss_pred eeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002863 299 KVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITV 348 (873)
Q Consensus 299 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 348 (873)
.+.+++.++....+.+.+.......+ ++....|++.++|.|-.+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 89999999999999987754332122 466889999999998765443
No 178
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.27 E-value=1.3e-05 Score=88.22 Aligned_cols=176 Identities=16% Similarity=0.152 Sum_probs=103.7
Q ss_pred CcccchhHHH---HHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHH
Q 002863 144 PTVVGLQLTF---DRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKK 220 (873)
Q Consensus 144 ~~~vgr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 220 (873)
+.++|.+..+ ..+...+..+..+.+.|+|++|+||||+|+.+++.. ...| ..+.... .....+. .++..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f---~~l~a~~-~~~~~ir-~~~~~ 97 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV---ERISAVT-SGVKEIR-EAIER 97 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE---EEEETTT-CCHHHHH-HHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe---EEEEecc-CCHHHHH-HHHHH
Confidence 4589998888 677788877777889999999999999999999876 2222 1122111 1222211 11111
Q ss_pred hCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccc--cccccccccCCCCCCCCcEEEE-Eccchh--hh-hcccc
Q 002863 221 IGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVF-TTREFE--VC-GQMEA 294 (873)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~--v~-~~~~~ 294 (873)
. ......+++.+|++|+++.. ...+.+...+..+ ...+|. ||.+.. +. .....
T Consensus 98 a------------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~---~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 98 A------------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG---TITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp H------------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT---SCEEEEEESSCGGGSSCHHHHTT
T ss_pred H------------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC---ceEEEecCCCCcccccCHHHhCc
Confidence 0 00112467899999999754 2333443333321 234443 555542 11 11223
Q ss_pred ccceeeccCChhhhHHHHHHHhcCCCC----CCCCChHHHHHHHHHHhCCchhHHHHH
Q 002863 295 HRSFKVECLRYDDAWKLFELKVGADTL----DSHPDIPELAETLAKDCGGLPLALITV 348 (873)
Q Consensus 295 ~~~~~l~~L~~~e~~~lf~~~~~~~~~----~~~~~~~~~~~~i~~~c~glPLai~~~ 348 (873)
...+.+.+++.++...++.+.+..... ....--++....|++.++|.+-.+..+
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 457889999999999999988754210 001112456788888999987655433
No 179
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.26 E-value=3e-05 Score=79.98 Aligned_cols=197 Identities=16% Similarity=0.139 Sum_probs=104.0
Q ss_pred CcccchhHHHHHHHHH-------Hh---cCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHH
Q 002863 144 PTVVGLQLTFDRVWRC-------LM---EEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKI 213 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~-------L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 213 (873)
+.++|.....++++.. +. ....+.+.|+|++|+|||++|+.+++.. ...| +.+..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~~----- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDKM----- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGGC-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHHh-----
Confidence 3467887776666652 32 2356788899999999999999999875 2222 222222110
Q ss_pred HHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc-----------c-cccccccCCCC--CCCCcEE
Q 002863 214 QEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV-----------D-LDQVGLPIPSR--TSVSNKV 279 (873)
Q Consensus 214 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~-~~~~~~~l~~~--~~~gs~i 279 (873)
.+.. ...........+......++.+|+|||++... . ...+...+... ......|
T Consensus 102 -------~g~~----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 102 -------IGFS----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp -------TTCC----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred -------cCCc----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0100 00000111112222334568899999986420 0 11121222111 0234456
Q ss_pred EEEccchhhhhc---cc-cccceeeccCCh-hhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCC------chhHHHHH
Q 002863 280 VFTTREFEVCGQ---ME-AHRSFKVECLRY-DDAWKLFELKVGADTLDSHPDIPELAETLAKDCGG------LPLALITV 348 (873)
Q Consensus 280 ivTtR~~~v~~~---~~-~~~~~~l~~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g------lPLai~~~ 348 (873)
|.||...+.... .+ -...+.++++++ ++...++.+.. .. -.+....|++.+.| ++-++.++
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~~-------~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-NF-------KDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-CS-------CHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-CC-------CHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 777776643221 11 145678888888 66666665532 11 14557888889888 44444444
Q ss_pred HHHHhcCCChHHHHHHHHHHHch
Q 002863 349 GRAMASRKTPREWEHAIEVLRSS 371 (873)
Q Consensus 349 ~~~l~~~~~~~~w~~~~~~l~~~ 371 (873)
-.+.. ......++.+++.+...
T Consensus 243 ~~a~~-~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 243 EMSLQ-MDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHTT-SCGGGHHHHHHHHHHHT
T ss_pred HHHhh-hchHHHHHHHHHHHHHc
Confidence 43332 23445666666555443
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.22 E-value=2.1e-05 Score=80.59 Aligned_cols=180 Identities=13% Similarity=0.118 Sum_probs=97.4
Q ss_pred CcccchhHHHHHHHHHHh---c---------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCLM---E---------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.+..++++.+.+. . ...+.|.|+|++|+|||++|+.+++.. ... .+.+.++.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 468999888777765542 1 123467899999999999999999876 222 23344433211
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc-------------cc----ccccccCCC-CC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV-------------DL----DQVGLPIPS-RT 273 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~----~~~~~~l~~-~~ 273 (873)
.+...........+.......+.+|++||++... .. ..+...+.. ..
T Consensus 78 ---------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 ---------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ---------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ---------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 0001111111122222234567899999997531 01 111111111 10
Q ss_pred CCCcEEEEEccchhhh-hcc----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh-HHHH
Q 002863 274 SVSNKVVFTTREFEVC-GQM----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPL-ALIT 347 (873)
Q Consensus 274 ~~gs~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~ 347 (873)
..+..||.||...... ... .....+.++..+.++-.++++..+..... ..........+++.+.|.+- .+..
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHH
Confidence 2345677777654321 111 12346788899999999999987754331 12222234778888888654 4443
Q ss_pred H
Q 002863 348 V 348 (873)
Q Consensus 348 ~ 348 (873)
+
T Consensus 221 l 221 (262)
T 2qz4_A 221 I 221 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.19 E-value=4.1e-06 Score=88.35 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=85.5
Q ss_pred cccchhHHHHHHHHHHh---------------cCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCccc
Q 002863 145 TVVGLQLTFDRVWRCLM---------------EEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ 209 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 209 (873)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++.... .......-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHH--
Confidence 47899888888876653 223457889999999999999988877522 122111123333311
Q ss_pred HHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccc-----------cccccccccCCCCCCCCcE
Q 002863 210 LEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL-----------VDLDQVGLPIPSRTSVSNK 278 (873)
Q Consensus 210 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~gs~ 278 (873)
.+.. .+... .......+... .+.-+|++|+++.. .....+...+... ..+..
T Consensus 109 ----------~l~~---~~~g~-~~~~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-~~~~~ 171 (309)
T 3syl_A 109 ----------DLVG---QYIGH-TAPKTKEVLKR--AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-RDDLV 171 (309)
T ss_dssp ----------GTCC---SSTTC-HHHHHHHHHHH--HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-TTTCE
T ss_pred ----------Hhhh---hcccc-cHHHHHHHHHh--cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-CCCEE
Confidence 0000 00111 11111122221 14569999999733 1122232233222 44567
Q ss_pred EEEEccchhh----------hhccccccceeeccCChhhhHHHHHHHhcC
Q 002863 279 VVFTTREFEV----------CGQMEAHRSFKVECLRYDDAWKLFELKVGA 318 (873)
Q Consensus 279 iivTtR~~~v----------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 318 (873)
||.||..... ... ....+.+++++.++-.+++...+..
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 8888764322 111 1267899999999999999887754
No 182
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=4.6e-06 Score=89.93 Aligned_cols=195 Identities=9% Similarity=0.079 Sum_probs=103.8
Q ss_pred CcccchhHHHHHHHHHH-hcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCC-C--CCce--------------------E
Q 002863 144 PTVVGLQLTFDRVWRCL-MEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTP-N--HFDF--------------------V 199 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~--~f~~--------------------~ 199 (873)
++++|.+..++.+..++ ..+..+.+.|+|+.|+||||+|+.+++...... . .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 45899999999998888 655544489999999999999999888531110 0 1111 1
Q ss_pred EEEEeCCcc-cHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCCCCCCC
Q 002863 200 IWVVVSRDL-QLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVS 276 (873)
Q Consensus 200 ~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~g 276 (873)
+.+..+... ......+++++.+..... ..... .+ ..+.+++-++|+|++.... ....+...+... ..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~-~~~ 164 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY-SKN 164 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS-TTT
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh-cCC
Confidence 111111100 000012222222211000 00000 00 0023467799999997632 122232222222 345
Q ss_pred cEEEEEccchh-hhhc-cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHHH
Q 002863 277 NKVVFTTREFE-VCGQ-MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITVG 349 (873)
Q Consensus 277 s~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 349 (873)
..+|++|.+.. +... ......+++.+++.++..+.+.+.+.......+. ++....|++.++|.+-.+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHH
Confidence 67777776532 2211 1234678999999999999999877543211110 2457889999999886554443
No 183
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.16 E-value=1e-06 Score=94.37 Aligned_cols=83 Identities=12% Similarity=0.082 Sum_probs=40.8
Q ss_pred CcceEEecCCCCCCcccccc---ccccccceEEeecCCCCcceeeccccccccccCccccccccEEEEccccCCCc--Cc
Q 002863 673 SIPSLCLRGCRLEPFTIFSL---ASLRHLQTLHLVECNDLEDFMIACAGEMKKIREIHGFHSLQNVYISHSKLRQV--TW 747 (873)
Q Consensus 673 ~L~~L~L~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l--~~ 747 (873)
+|+.|+|++|.+....+..+ ..+++|++|+|+. +.+++.....+. ..+..+++|+.|+|++|.++.- ..
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~-----~~L~~l~~L~~L~L~~n~i~d~~~~~ 326 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLL-----DHVDKIKHLKFINMKYNYLSDEMKKE 326 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHH-----TTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHH-----hhcccCCcceEEECCCCcCCHHHHHH
Confidence 45555555554432221111 2356777777765 445442222211 1113567788888887766542 12
Q ss_pred ccc-cCCCcEEeeccCc
Q 002863 748 LIL-APNLKHLEVQNCP 763 (873)
Q Consensus 748 l~~-l~~L~~L~L~~~~ 763 (873)
+.. + ...++++++.
T Consensus 327 l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 327 LQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHC--CSEEECCSBC
T ss_pred HHHHc--CCEEEecCCc
Confidence 221 2 3456666654
No 184
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.15 E-value=3.2e-05 Score=82.67 Aligned_cols=171 Identities=12% Similarity=0.094 Sum_probs=99.7
Q ss_pred CcccchhHHHHHHHHHHhc-----CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLME-----EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIA 218 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 218 (873)
+.++|++..++++..++.. .....|.|+|++|+|||++|+.+++.. ...| +.+.++.......+.
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~~---- 98 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDLA---- 98 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHHH----
Confidence 4689999999999888763 344578899999999999999998875 2222 223322211111111
Q ss_pred HHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCCC-----------------CCCCcEE
Q 002863 219 KKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPSR-----------------TSVSNKV 279 (873)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~-----------------~~~gs~i 279 (873)
..+.. ..+..+|+||++.... ....+...+... ..++..+
T Consensus 99 -------------------~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 99 -------------------AILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp -------------------HHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred -------------------HHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 11110 2356788888887531 111111111000 0113466
Q ss_pred EEEccchhh-hhcc-c-cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002863 280 VFTTREFEV-CGQM-E-AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITV 348 (873)
Q Consensus 280 ivTtR~~~v-~~~~-~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 348 (873)
|.||..... ...+ . ....+.+.+++.++...++.+.+....... -.+....|++.+.|.|-.+..+
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTC---EEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEE---CHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHCcCHHHHHHH
Confidence 666654322 1111 1 235789999999999999998875433111 1456788888999998555443
No 185
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.12 E-value=1.4e-05 Score=86.73 Aligned_cols=195 Identities=13% Similarity=0.138 Sum_probs=100.7
Q ss_pred CcccchhHHHHH---HHHHHhcCCc--EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEe----CCcccHHHHH
Q 002863 144 PTVVGLQLTFDR---VWRCLMEEHV--GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV----SRDLQLEKIQ 214 (873)
Q Consensus 144 ~~~vgr~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~----s~~~~~~~~~ 214 (873)
+.++|++..++. +.+.+..+.. +.+.|+|++|+|||++|+.+++.. .....| +.+.. +......+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL-GPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH-CSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh-cccCCc---ccccchhhhhcccchhHHH
Confidence 468999988766 4444544433 588999999999999999999987 221122 22221 1222333333
Q ss_pred HHHHHHh-CCC--------------------Cc----cc---cccCHHHHHHHHHHHh-----ccC----CeEEEEeccc
Q 002863 215 EIIAKKI-GLF--------------------NE----SW---KNKSMQEKAQQIFNIL-----SKK----KFVLLLDDMW 257 (873)
Q Consensus 215 ~~i~~~l-~~~--------------------~~----~~---~~~~~~~~~~~l~~~l-----~~k----~~LlVlDdv~ 257 (873)
....... +.. .. .. ...........+.... .++ +.+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 3333221 100 00 00 0000112222221111 233 4599999997
Q ss_pred ccc--ccccccccCCCCCCCCcEEEEEccc-------------hhhh-hccccccceeeccCChhhhHHHHHHHhcCCCC
Q 002863 258 ELV--DLDQVGLPIPSRTSVSNKVVFTTRE-------------FEVC-GQMEAHRSFKVECLRYDDAWKLFELKVGADTL 321 (873)
Q Consensus 258 ~~~--~~~~~~~~l~~~~~~gs~iivTtR~-------------~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 321 (873)
... ....+...+... ... .++++|.. ..+. ........+.+.+++.++..+++.+.+.....
T Consensus 200 ~l~~~~~~~L~~~le~~-~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 200 MLDIESFSFLNRALESD-MAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp GSBHHHHHHHHHHTTCT-TCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred ccChHHHHHHHHHhhCc-CCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 542 222233333222 222 34444431 0110 01112234799999999999999988754331
Q ss_pred CCCCChHHHHHHHHHHhC-CchhHHHH
Q 002863 322 DSHPDIPELAETLAKDCG-GLPLALIT 347 (873)
Q Consensus 322 ~~~~~~~~~~~~i~~~c~-glPLai~~ 347 (873)
.. -.+....|++.+. |.|-.+..
T Consensus 278 ~~---~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 278 EM---SEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp CB---CHHHHHHHHHHHHHSCHHHHHH
T ss_pred CC---CHHHHHHHHHHhcCCCHHHHHH
Confidence 11 2456788899987 77655443
No 186
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.11 E-value=3.4e-05 Score=82.84 Aligned_cols=180 Identities=11% Similarity=0.104 Sum_probs=102.8
Q ss_pred CcccchhHHHHHHHHHHhc------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCLME------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.+..++++.+.+.. ...+.|.|+|++|+|||++|+.+++.. .. ..+.+.++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhcc-
Confidence 4689999999998887642 235678899999999999999998875 22 2234444321110
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEeccccccc-------------cccccccCCC---CCC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELVD-------------LDQVGLPIPS---RTS 274 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~---~~~ 274 (873)
+.. ........+.... ..++.+|+||+++.... ...+...+.. ...
T Consensus 157 ----------------~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 157 ----------------WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ----------------STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ----------------ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 000 1112222222222 35678999999953210 1112111111 102
Q ss_pred CCcEEEEEccchh-hhhcc--ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCC-chhHHHHHHH
Q 002863 275 VSNKVVFTTREFE-VCGQM--EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGG-LPLALITVGR 350 (873)
Q Consensus 275 ~gs~iivTtR~~~-v~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~ 350 (873)
.+..||.||.... +.... .....+.+...+.++..+++...+....... ..+....|++.+.| .+-.+..+..
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3445666665432 21111 1234678888899999999988775432111 14567889999998 5556665544
No 187
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=1.9e-06 Score=80.71 Aligned_cols=48 Identities=15% Similarity=0.291 Sum_probs=27.4
Q ss_pred CCCcEeeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcC
Q 002863 595 VNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLG 643 (873)
Q Consensus 595 ~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~ 643 (873)
.+|++||+++| .++...-..+.++++|++|++++|..+++.....+..
T Consensus 61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~ 108 (176)
T 3e4g_A 61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ 108 (176)
T ss_dssp CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT
T ss_pred ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh
Confidence 35666666666 3544333335667777777777765555554444443
No 188
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.11 E-value=8.9e-05 Score=80.57 Aligned_cols=119 Identities=8% Similarity=0.058 Sum_probs=69.9
Q ss_pred ccceEEEEeecccccccccc--CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC--CCCccccCcccCCEEe
Q 002863 503 WKDVTRMSLMDNKIKRLTVS--PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS--DLPCEISNLVSLQYLD 578 (873)
Q Consensus 503 ~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n--~lp~~i~~L~~L~~L~ 578 (873)
..+++.+.+.. .++.+... ..|.+|+.+.+..+ ++.+. ..+|.++ .|..+.+..+ .++...-...+|+.+.
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig--~~aF~~c-~l~~i~~~~~l~~I~~~aF~~~~L~~i~ 119 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIG--DGAFADT-KLQSYTGMERVKKFGDYVFQGTDLDDFE 119 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEEC--TTTTTTC-CCCEEEECTTCCEECTTTTTTCCCSEEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEec--hhhhcCC-CCceEECCceeeEeccceeccCCccccc
Confidence 34666666653 45555433 66788888888644 66776 6778777 4666666554 3433322334788888
Q ss_pred cCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccc
Q 002863 579 LSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFE 629 (873)
Q Consensus 579 L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~ 629 (873)
+.++ +..+......-.+|..+.+..+ ++.+....+..+.+|+.+.+..
T Consensus 120 lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 120 FPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred CCCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccc
Confidence 8654 3334333222235666665543 5566666677777777776653
No 189
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.11 E-value=1.9e-05 Score=83.73 Aligned_cols=165 Identities=18% Similarity=0.217 Sum_probs=91.8
Q ss_pred HHHHHHHHhcC--CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccc
Q 002863 153 FDRVWRCLMEE--HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKN 230 (873)
Q Consensus 153 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 230 (873)
...+...+... ....+.|+|++|+||||||+.+++..... .+ .++++++ ..+...+...+..
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~-~~~~i~~------~~~~~~~~~~~~~------- 86 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GY-RVIYSSA------DDFAQAMVEHLKK------- 86 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TC-CEEEEEH------HHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CC-EEEEEEH------HHHHHHHHHHHHc-------
Confidence 33444444433 34678899999999999999999876221 22 2344433 2333333333211
Q ss_pred cCHHHHHHHHHHHhccCCeEEEEeccccccc---c-ccccccCCCCCCCCcEEEEEccchh---------hhhccccccc
Q 002863 231 KSMQEKAQQIFNILSKKKFVLLLDDMWELVD---L-DQVGLPIPSRTSVSNKVVFTTREFE---------VCGQMEAHRS 297 (873)
Q Consensus 231 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~-~~~~~~l~~~~~~gs~iivTtR~~~---------v~~~~~~~~~ 297 (873)
..... +...+ .+.-+|++||+..... + +.+...+......|..||+||.... +...+.....
T Consensus 87 ~~~~~----~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~ 161 (324)
T 1l8q_A 87 GTINE----FRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 161 (324)
T ss_dssp TCHHH----HHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEE
T ss_pred CcHHH----HHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceE
Confidence 01111 12222 2467999999975431 1 2222222110023457888776431 1122223356
Q ss_pred eeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh
Q 002863 298 FKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPL 343 (873)
Q Consensus 298 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 343 (873)
+.+++ +.++..+++...+.......+ ++....|++.+ |.+-
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHH
Confidence 89999 999999999988754332122 45678888888 7654
No 190
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.10 E-value=0.00012 Score=77.15 Aligned_cols=181 Identities=14% Similarity=0.171 Sum_probs=102.6
Q ss_pred CcccchhHHHHHHHHHHhc------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCLME------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.++.++.|.+.+.- ...+-|.++|++|+|||+||+++++.. . .. ..+.+..+.-..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC---cEEEEEhHHHHh--
Confidence 4689999888888776631 123578899999999999999999875 1 11 223343332110
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEeccccccc-------------cccccccCCC--CCCC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELVD-------------LDQVGLPIPS--RTSV 275 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~--~~~~ 275 (873)
.+.... +.....+.... ..++.+|++|+++.... ...+...+.. ....
T Consensus 85 ---------------~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 ---------------KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ---------------SSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ---------------hhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 011112 22233333333 45788999999975310 0111111111 0033
Q ss_pred CcEEEEEccchhhh-hcc--ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCc-hhHHHHHHH
Q 002863 276 SNKVVFTTREFEVC-GQM--EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGL-PLALITVGR 350 (873)
Q Consensus 276 gs~iivTtR~~~v~-~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~~ 350 (873)
+..||.||...... ..+ .....+.+...+.++-.++++.++....... -......|++.+.|. +-.|..+..
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45566666544221 111 1235678888899999999988875433111 134567899999886 444555543
No 191
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.09 E-value=1.5e-05 Score=84.64 Aligned_cols=180 Identities=9% Similarity=0.044 Sum_probs=102.4
Q ss_pred CcccchhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhC
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIG 222 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 222 (873)
++++|.++.++.+.+++..+.. .++.+.|++|+||||+|+.+++.. . ..++.+..+.. ....+...+.....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-~-----~~~~~i~~~~~-~~~~i~~~~~~~~~ 98 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-N-----ADMMFVNGSDC-KIDFVRGPLTNFAS 98 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-T-----EEEEEEETTTC-CHHHHHTHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-C-----CCEEEEccccc-CHHHHHHHHHHHHh
Confidence 4689999999999999987654 567778889999999999998875 1 12344544432 22222211111110
Q ss_pred CCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc---ccccccccCCCCCCCCcEEEEEccchh-hhhc-cccccc
Q 002863 223 LFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV---DLDQVGLPIPSRTSVSNKVVFTTREFE-VCGQ-MEAHRS 297 (873)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~~~~~l~~~~~~gs~iivTtR~~~-v~~~-~~~~~~ 297 (873)
.. ...+++-++|+||++... ..+.+...+... ..+.++|+||.... +... ......
T Consensus 99 ~~------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~-~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 99 AA------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY-SSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp BC------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH-GGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred hc------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC-CCCcEEEEEeCCccccCHHHHhhCcE
Confidence 00 012467899999997643 222232222221 24567888877643 1111 112346
Q ss_pred eeeccCChhhhHHHH-------HHHhcCCCCCCCCChHHHHHHHHHHhCCchhH-HHHHHHH
Q 002863 298 FKVECLRYDDAWKLF-------ELKVGADTLDSHPDIPELAETLAKDCGGLPLA-LITVGRA 351 (873)
Q Consensus 298 ~~l~~L~~~e~~~lf-------~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-i~~~~~~ 351 (873)
+++++++.++-.+++ .+.+.......++ .+....|++.++|.+-. +..+-.+
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 899999988844333 2222222211111 26678899999887654 4444433
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.08 E-value=6.9e-05 Score=78.36 Aligned_cols=179 Identities=12% Similarity=0.076 Sum_probs=100.9
Q ss_pred CcccchhHHHHHHHHHHhc------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCLME------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.. ... .+.+.++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SAT---FLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCE---EEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEeeHHHHhh--
Confidence 4689999999998887632 134678899999999999999999876 222 23344332110
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHH-hccCCeEEEEecccccccc---------c----ccc---ccCCCC-C
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI-LSKKKFVLLLDDMWELVDL---------D----QVG---LPIPSR-T 273 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~---------~----~~~---~~l~~~-~ 273 (873)
. ...........+... ...++.+|++|++.....- . .+. ..++.. .
T Consensus 93 ---------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ---------------K-YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ---------------S-SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ---------------c-ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 011122223333322 2457789999999653110 0 011 011111 0
Q ss_pred CCCcEEEEEccchhh-hhcc--ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh-HHHHHH
Q 002863 274 SVSNKVVFTTREFEV-CGQM--EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPL-ALITVG 349 (873)
Q Consensus 274 ~~gs~iivTtR~~~v-~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 349 (873)
..+..||.||..... .... .....+.+...+.++...++...+....... .......+++.+.|.+- ++..+.
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL---DTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 134566667765432 1110 1234567777788888888887765432111 13456789999999775 554443
No 193
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=2.3e-05 Score=83.70 Aligned_cols=178 Identities=15% Similarity=0.193 Sum_probs=101.4
Q ss_pred cccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCc-eEEEEEeCCcccHHHHHHHHHHHhCC
Q 002863 145 TVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD-FVIWVVVSRDLQLEKIQEIIAKKIGL 223 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~ 223 (873)
.++|.+..++.+..++..++.+.+.++|++|+||||+|+.+++.. . ...+. .+.-+..+.......+...+ ..+..
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l-~-~~~~~~~~~~~~~~~~~~~~~ir~~i-~~~~~ 102 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI-Y-GKNYSNMVLELNASDDRGIDVVRNQI-KDFAS 102 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH-H-TTSHHHHEEEECTTSCCSHHHHHTHH-HHHHH
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH-c-CCCccceEEEEcCcccccHHHHHHHH-HHHHh
Confidence 468998889998888887765558999999999999999999875 1 11111 12222233222222221111 11000
Q ss_pred CCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccchh-hhhc-ccccccee
Q 002863 224 FNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTREFE-VCGQ-MEAHRSFK 299 (873)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~ 299 (873)
.. ....+.+-++|+|+++... ..+.+...+... ....++|++|.... +... ......+.
T Consensus 103 ~~----------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-~~~~~~il~~n~~~~i~~~i~sR~~~~~ 165 (340)
T 1sxj_C 103 TR----------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERY-TKNTRFCVLANYAHKLTPALLSQCTRFR 165 (340)
T ss_dssp BC----------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred hc----------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC-CCCeEEEEEecCccccchhHHhhceeEe
Confidence 00 0012346789999996432 222232222222 33456777665432 2111 12234688
Q ss_pred eccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHH
Q 002863 300 VECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLAL 345 (873)
Q Consensus 300 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 345 (873)
+.+++.++..+.+.+.+........ ++..+.|++.++|.+--+
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 166 FQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 9999999999988877643321111 355778899999977643
No 194
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.05 E-value=4.7e-05 Score=83.21 Aligned_cols=282 Identities=12% Similarity=0.111 Sum_probs=165.0
Q ss_pred cccccceEEEEeeccc---cccccc--cCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC--CC-CccccCc
Q 002863 500 VGMWKDVTRMSLMDNK---IKRLTV--SPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS--DL-PCEISNL 571 (873)
Q Consensus 500 ~~~~~~l~~l~l~~~~---~~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n--~l-p~~i~~L 571 (873)
+..+.+++.+.+..+. ++.+.. ...|..|+.+.+..+ ++.+. ...|..+.+|+.+.+..+ .+ ...+..+
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~--~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c 159 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID--SEAFHHCEELDTVTIPEGVTSVADGMFSYC 159 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC--TTTTTTCTTCCEEECCTTCCEECTTTTTTC
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh--hhhhhhhcccccccccceeeeecccceecc
Confidence 3456788888887664 444433 256788888777654 66666 678999999999999876 33 4467788
Q ss_pred ccCCEEecCCCCCCccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEeccccCCCchh------------hHH
Q 002863 572 VSLQYLDLSNSIPDRLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDS------------LVE 639 (873)
Q Consensus 572 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~------------~~~ 639 (873)
.+|+.+.+.++ +..+........+|+.+.+..+ +..+...++..+.+|.............. ...
T Consensus 160 ~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (394)
T 4gt6_A 160 YSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALI 236 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEE
T ss_pred cccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceecccccccccccceeeccccccccccc
Confidence 99999999754 5556554334567999988764 56666677888888887765532100000 000
Q ss_pred HhcCCCCCceeEEEEcchhhHHHhhccCCCccCCcceEEecCCCCCCccccccccccccceEEeecCCCCcceeeccccc
Q 002863 640 ELLGLEHLNVLTITLHSNHALQRLLSSSRFQSISIPSLCLRGCRLEPFTIFSLASLRHLQTLHLVECNDLEDFMIACAGE 719 (873)
Q Consensus 640 ~l~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 719 (873)
.......+..+.+ .+.+..+....+.....|+.+.+..+. .......+.++++|+.+.+. +.++.+....+
T Consensus 237 ~~~~~~~~~~~~i----p~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF-- 307 (394)
T 4gt6_A 237 RYPSQREDPAFKI----PNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS--SRITELPESVF-- 307 (394)
T ss_dssp ECCTTCCCSEEEC----CTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC--TTCCEECTTTT--
T ss_pred ccccccccceEEc----CCcceEcccceeeecccccEEeccccc-ceecCcccccccccccccCC--CcccccCceee--
Confidence 0011112222221 111222222333344467777775442 22334467778888888885 34544433333
Q ss_pred cccccCccccccccEEEEccccCCCcC--cccccCCCcEEeeccCccchhhcccCcccccccccccccccccccceeccc
Q 002863 720 MKKIREIHGFHSLQNVYISHSKLRQVT--WLILAPNLKHLEVQNCPYMEEIINIGKLGEVPAEVMENLTPFARLEYLILK 797 (873)
Q Consensus 720 ~~~~~~~~~l~~L~~L~L~~~~l~~l~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 797 (873)
..+.+|+.+.|..+ ++.+. .+..+.+|+.+.|..+ ++.+.. ..+..+++|+.+.+.
T Consensus 308 -------~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~------------~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 308 -------AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPE------------SAFSNCTALNNIEYS 365 (394)
T ss_dssp -------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCG------------GGGTTCTTCCEEEES
T ss_pred -------cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhH------------hHhhCCCCCCEEEEC
Confidence 56778888888754 55553 6777888888888643 222211 356778888888887
Q ss_pred CcccccccccCCCCCCCccEEeEc
Q 002863 798 GLNNLKNICSNALPFPRLKEMSVH 821 (873)
Q Consensus 798 ~~~~L~~l~~~~~~~~~L~~L~l~ 821 (873)
+... .+ .....+..|+.+.+.
T Consensus 366 ~~~~--~~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 366 GSRS--QW-NAISTDSGLQNLPVA 386 (394)
T ss_dssp SCHH--HH-HTCBCCCCC------
T ss_pred Ccee--eh-hhhhccCCCCEEEeC
Confidence 6322 22 233345566666553
No 195
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.03 E-value=6e-05 Score=79.68 Aligned_cols=178 Identities=18% Similarity=0.170 Sum_probs=102.8
Q ss_pred CcccchhHHHHHHHHHHh----------c--CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCLM----------E--EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.+..++.+.+.+. . ...+-|.++|++|+|||++|+++++.. ...| +.+..+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~---~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEE---EEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCE---EEEchH------
Confidence 458999999999988772 1 123568899999999999999999876 2222 223221
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEeccccccc-------------cccccccC---CCCCC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELVD-------------LDQVGLPI---PSRTS 274 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-------------~~~~~~~l---~~~~~ 274 (873)
++.. .. . ...+.....+.... ..++.+|+||+++.... ...+...+ ... .
T Consensus 86 ~l~~----~~-------~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~ 152 (322)
T 3eie_A 86 DLVS----KW-------M-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-S 152 (322)
T ss_dssp HHHT----TT-------G-GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS-C
T ss_pred HHhh----cc-------c-chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc-C
Confidence 1110 00 0 11222333333333 45678999999974311 11111111 111 3
Q ss_pred CCcEEEEEccchhhhh-cc--ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCC-chhHHHHHH
Q 002863 275 VSNKVVFTTREFEVCG-QM--EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGG-LPLALITVG 349 (873)
Q Consensus 275 ~gs~iivTtR~~~v~~-~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~ 349 (873)
.+..||.||....... .+ .....+.+...+.++-.++++..+....... -......|++.+.| .+-.|..+.
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4556666776543211 11 1234678888999999999998876543111 13456788899887 454555444
No 196
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.03 E-value=5.3e-05 Score=80.55 Aligned_cols=171 Identities=13% Similarity=0.106 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHhcCCc-EEEEEEeCCCCcHHHHHHHHHhhhccCC-------------------CCCceEEEEEeC---
Q 002863 149 LQLTFDRVWRCLMEEHV-GIVGLYGMGGVGKTTLLTQINNRFFDTP-------------------NHFDFVIWVVVS--- 205 (873)
Q Consensus 149 r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~s--- 205 (873)
.++..+.+...+..++. +.+.++|+.|+||||+|+.+.+...... .++| ..++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 35566777777776654 5789999999999999999988751110 1123 2233221
Q ss_pred CcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEc
Q 002863 206 RDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTT 283 (873)
Q Consensus 206 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTt 283 (873)
.......+ +.+.+.+.... ..+++-++|+|+++... ..+.+...+... ..++.+|++|
T Consensus 86 ~~~~i~~i-r~l~~~~~~~~------------------~~~~~kvviIdead~l~~~a~naLLk~lEep-~~~~~~Il~t 145 (334)
T 1a5t_A 86 NTLGVDAV-REVTEKLNEHA------------------RLGGAKVVWVTDAALLTDAAANALLKTLEEP-PAETWFFLAT 145 (334)
T ss_dssp SSBCHHHH-HHHHHHTTSCC------------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSC-CTTEEEEEEE
T ss_pred CCCCHHHH-HHHHHHHhhcc------------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCC-CCCeEEEEEe
Confidence 11122221 12222221110 12567899999997642 233333333332 4456777776
Q ss_pred cchh-hhhc-cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002863 284 REFE-VCGQ-MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITV 348 (873)
Q Consensus 284 R~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 348 (873)
.+.+ +... ......+++.++++++..+.+.+... . -++....+++.++|.|..+..+
T Consensus 146 ~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 146 REPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----M---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----C---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred CChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 6543 3221 23346789999999999999987751 1 1345678999999999766543
No 197
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.97 E-value=0.00011 Score=79.93 Aligned_cols=179 Identities=13% Similarity=0.096 Sum_probs=99.1
Q ss_pred CcccchhHHHHHHHHHHhc------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCLME------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.+..++.+.+++.. ...+-|.|+|++|+|||++|+.+++.. .. ..+.+.++.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 4689999999999887731 124578899999999999999998875 21 123333332211
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEecccccc--------c-----cccccccC---CCCCC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELV--------D-----LDQVGLPI---PSRTS 274 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------~-----~~~~~~~l---~~~~~ 274 (873)
.. .... ......+.... ...+.+|+||+++... . ...+...+ .....
T Consensus 187 ~~---------------~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 KY---------------VGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp --------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc---------------cchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 0011 12222222222 3466899999996431 0 01111111 11002
Q ss_pred CCcEEEEEccchh-hhhcc--ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchh-HHHHHH
Q 002863 275 VSNKVVFTTREFE-VCGQM--EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPL-ALITVG 349 (873)
Q Consensus 275 ~gs~iivTtR~~~-v~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 349 (873)
....||.||.... +...+ .....+.+...+.++..+++...+...... -..+....|++.+.|..- ++..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP---LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC---SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2345665665432 21111 122457888899999999998887543311 124467789999988543 555543
No 198
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.95 E-value=5.2e-05 Score=81.20 Aligned_cols=178 Identities=18% Similarity=0.165 Sum_probs=100.4
Q ss_pred CcccchhHHHHHHHHHHhc------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCLME------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.+..++.|.+.+.. ...+-|.|+|++|+|||+||+++++.. ... .+.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 4689999999998887631 123457899999999999999999986 222 2222221
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEeccccccc-------------cccccccC---CCCCC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELVD-------------LDQVGLPI---PSRTS 274 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-------------~~~~~~~l---~~~~~ 274 (873)
++.. .. .... +.....+.... ..++.+|+||+++.... ...+...+ ... .
T Consensus 119 ~l~~----~~-------~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~-~ 185 (355)
T 2qp9_X 119 DLVS----KW-------MGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-S 185 (355)
T ss_dssp HHHS----CC----------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----
T ss_pred HHhh----hh-------cchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc-C
Confidence 1111 00 1111 22222333322 45789999999975321 11111111 111 2
Q ss_pred CCcEEEEEccchhhh-hcc--ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCC-chhHHHHHH
Q 002863 275 VSNKVVFTTREFEVC-GQM--EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGG-LPLALITVG 349 (873)
Q Consensus 275 ~gs~iivTtR~~~v~-~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~ 349 (873)
.+..||.||...... ..+ .....+.+...+.++-.+++..++....... -......|++.+.| .+-.|..+.
T Consensus 186 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345666677654221 111 1235678888899999999998876443111 13456789999988 454455444
No 199
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.94 E-value=1.4e-05 Score=77.10 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=40.9
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.++||+.+++.+.+.+.....+.+.|+|++|+||||+|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987666778899999999999999998875
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.94 E-value=0.00011 Score=76.72 Aligned_cols=174 Identities=15% Similarity=0.153 Sum_probs=98.8
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccH
Q 002863 144 PTVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 210 (873)
++++|.+..++++.+++.. ...+.|.|+|++|+||||||+.+++.. ... ++.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~-----~i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE-----EEEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC-----EEEEE----h
Confidence 4589999888888777642 234578999999999999999999876 221 22232 2
Q ss_pred HHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc------------c----cccccccCCC-CC
Q 002863 211 EKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV------------D----LDQVGLPIPS-RT 273 (873)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~-~~ 273 (873)
..+.... .+.. .......+.......+.+|++|++.... . ...+...+.. ..
T Consensus 83 ~~l~~~~---~g~~--------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMW---FGES--------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHH---HTTC--------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhh---cCch--------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 2332221 1211 1111222222334578999999996421 0 1111111111 11
Q ss_pred CCCcEEEEEccchhhh-hc-c---ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhH
Q 002863 274 SVSNKVVFTTREFEVC-GQ-M---EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLA 344 (873)
Q Consensus 274 ~~gs~iivTtR~~~v~-~~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 344 (873)
..+..||.||...+.. .. . .....+.+...+.++-.++++..+.........++ ..+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 3355777777655322 11 1 12346888999999999999887754432222333 4556667777644
No 201
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.0004 Score=73.93 Aligned_cols=171 Identities=16% Similarity=0.213 Sum_probs=98.8
Q ss_pred CcccchhHHHHHHHHHHh----c---------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccH
Q 002863 144 PTVVGLQLTFDRVWRCLM----E---------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 210 (873)
+++.|-++.+++|.+.+. . ...+-|.++|++|+|||.||+++++.. ...| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc-
Confidence 356888888888776543 1 234568899999999999999999987 2222 3333332110
Q ss_pred HHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEecccccc----------c------cccccccCCC-C
Q 002863 211 EKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELV----------D------LDQVGLPIPS-R 272 (873)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~------~~~~~~~l~~-~ 272 (873)
.+... .+..++.+.... ...+++|++|+++... + ...+...+.. .
T Consensus 221 ----------------k~vGe-se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 221 ----------------KYIGE-GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp ----------------SSTTH-HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ----------------cccch-HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 00111 122223333332 4578999999997421 0 0111111111 1
Q ss_pred CCCCcEEEEEccchhhh-----hccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch
Q 002863 273 TSVSNKVVFTTREFEVC-----GQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 273 ~~~gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
...+..||.||...+.. +...-...+.++..+.++-.++|+.+........+.++ ..|++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 13445667777655432 11123567889988999999999888765443333343 56777888753
No 202
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.86 E-value=0.00029 Score=77.83 Aligned_cols=180 Identities=13% Similarity=0.158 Sum_probs=100.1
Q ss_pred CcccchhHHHHHHHHHHhc------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCLME------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.+..++.|.+.+.. ...+-|.|+|++|+|||+||+.+++.. . .. -++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~-~-~~-----~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS-----TFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC-C-SS-----EEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc-C-CC-----CEEEEeHHH---
Confidence 4689999999988887631 234678899999999999999999875 1 11 223333221
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHH-hccCCeEEEEeccccccc-------------cccccccCCCC--CCC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI-LSKKKFVLLLDDMWELVD-------------LDQVGLPIPSR--TSV 275 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~~--~~~ 275 (873)
+... ..+. ..... ..+... -..++.+|+||+++.... ...+...+... ...
T Consensus 204 -l~~~---~~g~-----~~~~~----~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 204 -LVSK---WLGE-----SEKLV----KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp -----------------CCCTH----HHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred -HHhh---hcch-----HHHHH----HHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 1110 0110 11111 122222 235788999999975310 01111122111 134
Q ss_pred CcEEEEEccchhhhh-cc--ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCc-hhHHHHHH
Q 002863 276 SNKVVFTTREFEVCG-QM--EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGL-PLALITVG 349 (873)
Q Consensus 276 gs~iivTtR~~~v~~-~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 349 (873)
+..||.||....... .+ .....+.+...+.++...+|..++....... -......|++.+.|. +-.|..+.
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 556776776543211 11 1234677888888888999988875432111 134567889999884 44555444
No 203
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.80 E-value=0.00046 Score=74.82 Aligned_cols=120 Identities=10% Similarity=0.035 Sum_probs=76.4
Q ss_pred CCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCC--CC-CccccCcccCCEEecCCCCCCccchhhhcCCCCcE
Q 002863 523 PTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHS--DL-PCEISNLVSLQYLDLSNSIPDRLPLGLKYLVNLKC 599 (873)
Q Consensus 523 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n--~l-p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 599 (873)
....+|+.+.+... ++.++ ..+|.+|.+|+.+.|..+ .| ...|.++ +|+.+.+.. .+..++.......+|+.
T Consensus 43 ~~~~~i~~v~ip~~-vt~Ig--~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 43 KDRDRISEVRVNSG-ITSIG--EANFNSCYNMTKVTVASTVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGGGGCSEEEECTT-EEEEC--TTTTTTCTTCCEEEECTTCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSE
T ss_pred ccccCCEEEEeCCC-ccChH--HHHhhCCCCCCEEEeCCcceEechhhhcCC-CCceEECCc-eeeEeccceeccCCccc
Confidence 44577888888654 78888 788999999999999776 44 3445555 677777754 35666655333458999
Q ss_pred eeccccccccccChhhhCCCcccceEeccccCCCchhhHHHhcCCCCCceeEE
Q 002863 600 LNLEYTFRLSRISPQVISNLKMLRVLRMFECGSFLDSLVEELLGLEHLNVLTI 652 (873)
Q Consensus 600 L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 652 (873)
+.+..+ +..+...+|..+ +|..+.+... ........+..+.+++...+
T Consensus 118 i~lp~~--~~~i~~~~F~~~-~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~ 165 (379)
T 4h09_A 118 FEFPGA--TTEIGNYIFYNS-SVKRIVIPKS--VTTIKDGIGYKAENLEKIEV 165 (379)
T ss_dssp EECCTT--CCEECTTTTTTC-CCCEEEECTT--CCEECSCTTTTCTTCCEEEE
T ss_pred ccCCCc--cccccccccccc-eeeeeeccce--eeccccchhccccccccccc
Confidence 999765 566666666655 5666655432 11112223344555555444
No 204
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00037 Score=75.55 Aligned_cols=171 Identities=14% Similarity=0.199 Sum_probs=97.8
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccH
Q 002863 144 PTVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 210 (873)
+++.|-++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 3568888888887776531 234678899999999999999999987 222 23343332110
Q ss_pred HHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEecccccc--------c--------cccccccCCC-C
Q 002863 211 EKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELV--------D--------LDQVGLPIPS-R 272 (873)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------~--------~~~~~~~l~~-~ 272 (873)
.+... .......+.... ...+++|++|+++... . +..+...+.. .
T Consensus 254 ----------------k~~Ge-se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 254 ----------------KYIGE-SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp ----------------SSSSH-HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred ----------------ccchH-HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 01111 122222233222 4578999999996421 0 0111111111 1
Q ss_pred CCCCcEEEEEccchhhhhc-c----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch
Q 002863 273 TSVSNKVVFTTREFEVCGQ-M----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 273 ~~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
...+..||.||...+.... + .-...+.++..+.++-.++|+.+........+.++ ..+++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 1234567778776543211 1 12456788888888888999887765443333343 56677787753
No 205
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.79 E-value=0.0001 Score=76.74 Aligned_cols=147 Identities=11% Similarity=0.091 Sum_probs=91.1
Q ss_pred chhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCC-CCCceEEEEEeCC-cccHHHHHHHHHHHhCCCC
Q 002863 148 GLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTP-NHFDFVIWVVVSR-DLQLEKIQEIIAKKIGLFN 225 (873)
Q Consensus 148 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 225 (873)
|-++.++.+...+..++.+.+.++|++|+||||+|+.+.+...... .+.+ ..++..+. ...+..+ +.+.+.+...+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 4455677788888776778999999999999999999987531111 2334 34554443 3333333 23444443211
Q ss_pred ccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCCCCCCCcEEEEEccch-hhhhccccccceeecc
Q 002863 226 ESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-EVCGQMEAHRSFKVEC 302 (873)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~~~~~~~~~~l~~ 302 (873)
..+++-++|+|+++... ..+.+...+... ...+.+|++|.+. .+....... .+++.+
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LEep-~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEP-PEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSC-CTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCC-CCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 12467799999997542 334444444332 4556777666543 444334445 899999
Q ss_pred CChhhhHHHHHHHh
Q 002863 303 LRYDDAWKLFELKV 316 (873)
Q Consensus 303 L~~~e~~~lf~~~~ 316 (873)
+++++..+.+.+.+
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 206
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.77 E-value=1.1e-05 Score=77.44 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHhc---CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCC
Q 002863 149 LQLTFDRVWRCLME---EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFN 225 (873)
Q Consensus 149 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 225 (873)
....++.+.+++.+ .....+.|+|++|+||||||+.+++... ....+. ++++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~~-~~~~------~~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-EKKGIR-GYFF------DTKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-HHSCCC-CCEE------EHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH-HHcCCe-EEEE------EHHHHHHHHHHHhcCch
Confidence 34444455544433 2356899999999999999999998762 111111 2233 34455555444332110
Q ss_pred ccccccCHHHHHHHHHHHhccCCeEEEEecccc--ccccc--cccccCCCCCCCCcEEEEEccch
Q 002863 226 ESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWE--LVDLD--QVGLPIPSRTSVSNKVVFTTREF 286 (873)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~--~~~~~l~~~~~~gs~iivTtR~~ 286 (873)
. .... +.+. +.-+|||||++. ...|. .+...+......|..||+||...
T Consensus 91 -----~--~~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 -----D--TKFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp -----C--SHHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred -----H--HHHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 0 1111 2222 567899999973 23332 12111111102466888888653
No 207
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.72 E-value=0.00016 Score=80.50 Aligned_cols=150 Identities=15% Similarity=0.151 Sum_probs=81.9
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCC--CCC-c-eEEEEEeCCcccHHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTP--NHF-D-FVIWVVVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~~s~~~~~~~~~~~i~~ 219 (873)
+.++||+.+++.+++.+......-+.|+|++|+|||++|+.+++...... ... + .++.+.++. .
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~------------~ 247 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------------K 247 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc------------c
Confidence 35899999999999999765555678999999999999999998752111 000 1 122222220 0
Q ss_pred HhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhhh-------cc
Q 002863 220 KIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVCG-------QM 292 (873)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~-------~~ 292 (873)
..|. ........ +...-..++.+|++| ........+...+.. ...++|.+|....... ..
T Consensus 248 ~~g~-----~e~~~~~~---~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~---g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 248 YRGE-----FEDRLKKV---MDEIRQAGNIILFID--AAIDASNILKPSLAR---GELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp ----------CTTHHHH---HHHHHTCCCCEEEEC--C--------CCCTTS---SSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ccch-----HHHHHHHH---HHHHHhcCCeEEEEe--CchhHHHHHHHhhcC---CCEEEEecCCHHHHHHHhhcCHHHH
Confidence 0000 00111111 222223567899999 122222223333322 2356666665544211 11
Q ss_pred ccccceeeccCChhhhHHHHHHHhcC
Q 002863 293 EAHRSFKVECLRYDDAWKLFELKVGA 318 (873)
Q Consensus 293 ~~~~~~~l~~L~~~e~~~lf~~~~~~ 318 (873)
.....+.++..+.++..+++...+..
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHHHH
Confidence 12336899999999999999876543
No 208
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00055 Score=74.06 Aligned_cols=170 Identities=18% Similarity=0.240 Sum_probs=92.0
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccH
Q 002863 144 PTVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 210 (873)
+++.|-++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.+..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhc-
Confidence 3578899888888776531 234568899999999999999999987 222 23343332110
Q ss_pred HHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEecccccc--------c--------cccccccCCC-C
Q 002863 211 EKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELV--------D--------LDQVGLPIPS-R 272 (873)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------~--------~~~~~~~l~~-~ 272 (873)
.+... .+..++.+.... ...++++++|+++... . ...+...+.. .
T Consensus 245 ----------------~~~Ge-~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 245 ----------------KYLGE-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp ----------------SSCSH-HHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred ----------------cccch-hHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 00111 122222333222 4578999999986310 0 1111111111 0
Q ss_pred CCCCcEEEEEccchhhh-----hccccccceeeccCC-hhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCc
Q 002863 273 TSVSNKVVFTTREFEVC-----GQMEAHRSFKVECLR-YDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGL 341 (873)
Q Consensus 273 ~~~gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~-~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 341 (873)
...+..||.||...+.. +...-...+.+..++ .++-..+|+.+........+.++ ..+++.+.|.
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCC
Confidence 13455677777655431 111123456776564 45556677776654433333343 5667777775
No 209
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.70 E-value=8.4e-06 Score=78.52 Aligned_cols=107 Identities=12% Similarity=0.063 Sum_probs=56.6
Q ss_pred CCCCcccEEEecCC-ccccCC--CCchhhhcCCcceEEecCCCCCC--------ccccCcccCCEEecCCCCCCc-----
Q 002863 523 PTSPRLLTLFLNSN-YFKNDK--VNYHFFKSMASLRVLKLSHSDLP--------CEISNLVSLQYLDLSNSIPDR----- 586 (873)
Q Consensus 523 ~~~~~L~~L~l~~n-~l~~~~--~~~~~~~~l~~Lr~L~L~~n~lp--------~~i~~L~~L~~L~L~~~~i~~----- 586 (873)
...+.|++|+|++| .+.... .....+...++|++|+|++|.+. ..+...++|++|+|++|.+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34566777777766 553321 01233455666777777776542 223344566666666666654
Q ss_pred cchhhhcCCCCcEeec--cccccccccCh----hhhCCCcccceEecccc
Q 002863 587 LPLGLKYLVNLKCLNL--EYTFRLSRISP----QVISNLKMLRVLRMFEC 630 (873)
Q Consensus 587 lp~~i~~l~~L~~L~L--~~~~~l~~l~~----~~i~~l~~L~~L~l~~~ 630 (873)
+...+...++|++|+| ++| .+..-.. ..+...++|++|++++|
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3444555666666666 555 4433111 12334455666666554
No 210
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=9.6e-06 Score=82.17 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=30.6
Q ss_pred hcCCcceEEecCCCCC------CccccCcccCCEEecCCCCCCccchhhhcCC--CCcEeecccc
Q 002863 549 KSMASLRVLKLSHSDL------PCEISNLVSLQYLDLSNSIPDRLPLGLKYLV--NLKCLNLEYT 605 (873)
Q Consensus 549 ~~l~~Lr~L~L~~n~l------p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~~ 605 (873)
.++++|+.|+|++|.| |..+..+++|++|+|++|.+..+ ..+..+. +|++|+|++|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCC
Confidence 4556666666666633 23334566666666666665555 2233333 5666666666
No 211
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00068 Score=72.41 Aligned_cols=169 Identities=18% Similarity=0.256 Sum_probs=95.6
Q ss_pred cccchhHHHHHHHHHHh----c---------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 145 TVVGLQLTFDRVWRCLM----E---------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++.|.++.+++|.+.+. . ...+-|.++|++|+|||.||+++++.. ...| +.+..+.-.
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l~--- 253 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSELI--- 253 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGGC---
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHhh---
Confidence 46788888888776543 1 234678899999999999999999987 2222 233322210
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEeccccccc----------------cccccccCCC-CC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELVD----------------LDQVGLPIPS-RT 273 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~-~~ 273 (873)
..+.. ..+...+.+.... +..+++|++|+++.... ...+...+.. ..
T Consensus 254 --------------sk~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 254 --------------QKYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp --------------CSSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred --------------hccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 00011 1122233333333 45789999999864210 0011111111 11
Q ss_pred CCCcEEEEEccchhhhhc-c----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCc
Q 002863 274 SVSNKVVFTTREFEVCGQ-M----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGL 341 (873)
Q Consensus 274 ~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 341 (873)
..+..||.||...+.... + .....+.++.-+.++-.++|+.+........+.++ ..|++.+.|.
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 334566777766544221 1 12345788888888888999888765443333344 5667777775
No 212
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00067 Score=73.23 Aligned_cols=169 Identities=16% Similarity=0.219 Sum_probs=96.8
Q ss_pred cccchhHHHHHHHHHHh----c---------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 145 TVVGLQLTFDRVWRCLM----E---------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++.|-++.+++|.+.+. . ...+-|.++|++|+|||+||+++++.. ... .+.+..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhhc--
Confidence 57888888888876542 1 245678899999999999999999987 222 23333332110
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHH-hccCCeEEEEeccccccc----------------cccccccCCC-CC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI-LSKKKFVLLLDDMWELVD----------------LDQVGLPIPS-RT 273 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~-~~ 273 (873)
.+... .+...+.+... -...+++|++|+++.... ...+...+.. ..
T Consensus 282 ---------------k~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 282 ---------------KYVGE-GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp ---------------CSSSH-HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred ---------------ccCCH-HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 00111 12222223322 245789999999964210 0011111111 11
Q ss_pred CCCcEEEEEccchhhhh-----ccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCc
Q 002863 274 SVSNKVVFTTREFEVCG-----QMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGL 341 (873)
Q Consensus 274 ~~gs~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 341 (873)
..+..||.||...+... ...-...+.+...+.++-.++|+.+..........++ ..|++.|.|.
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNS 414 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCC
Confidence 23445666776544321 1123567888888899999999888765443333343 5677888875
No 213
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00031 Score=76.05 Aligned_cols=170 Identities=14% Similarity=0.190 Sum_probs=96.3
Q ss_pred CcccchhHHHHHHHHHHh----c---------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccH
Q 002863 144 PTVVGLQLTFDRVWRCLM----E---------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 210 (873)
+++.|-++.+++|.+.+. . ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhhh-
Confidence 357888988888877642 1 235678899999999999999999987 222 23333322110
Q ss_pred HHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEeccccc-------cc---------cccccccCCCC-
Q 002863 211 EKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWEL-------VD---------LDQVGLPIPSR- 272 (873)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-------~~---------~~~~~~~l~~~- 272 (873)
.+... .+...+.+.... ...+++|++|+++.. .. ...+...+...
T Consensus 254 ----------------~~vGe-se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 254 ----------------MYIGE-GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp ----------------SCSSH-HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred ----------------cccch-HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 00111 122223333222 357899999998631 00 01111112111
Q ss_pred CCCCcEEEEEccchhhhhc-c----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCc
Q 002863 273 TSVSNKVVFTTREFEVCGQ-M----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGL 341 (873)
Q Consensus 273 ~~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 341 (873)
...+..||.||...+.... + .-...+.++..+.++-.++|+.+........+.++ ..|++.+.|.
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 0234456667776543211 1 13456888888888888999877654432233333 5677788774
No 214
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.67 E-value=5.6e-05 Score=69.38 Aligned_cols=45 Identities=24% Similarity=0.220 Sum_probs=35.4
Q ss_pred cccchhHHHHHHHHHHhc--CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQLTFDRVWRCLME--EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.++|+...++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999887753 233346799999999999999998875
No 215
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.65 E-value=0.00013 Score=87.76 Aligned_cols=154 Identities=16% Similarity=0.231 Sum_probs=84.6
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhcc--CCCCC-c-eEEEEEeCCcccHHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFD--TPNHF-D-FVIWVVVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~f-~-~~~wv~~s~~~~~~~~~~~i~~ 219 (873)
+.++||+++++++++.|......-+.++|++|+||||+|+.+++.... +.... + .++++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 357999999999999997765566789999999999999999887521 11111 1 233343322100
Q ss_pred HhCCCCccccccCHHHHHHHHHHHhc--cCCeEEEEecccccc---c----cc---cccccCCCCCCCCcEEEEEccchh
Q 002863 220 KIGLFNESWKNKSMQEKAQQIFNILS--KKKFVLLLDDMWELV---D----LD---QVGLPIPSRTSVSNKVVFTTREFE 287 (873)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~----~~---~~~~~l~~~~~~gs~iivTtR~~~ 287 (873)
+. . ...........+...+. +++.+|++|++.... . ++ .+...+. ..+..+|.||....
T Consensus 240 --g~---~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~---~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 --GA---K-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA---RGELRLIGATTLDE 310 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH---TTCCCEEEEECHHH
T ss_pred --cC---c-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh---CCCeEEEEecCchH
Confidence 00 0 01122333333333332 368899999997532 0 11 1222222 12345665555433
Q ss_pred h-----hhc-cccccceeeccCChhhhHHHHHHHh
Q 002863 288 V-----CGQ-MEAHRSFKVECLRYDDAWKLFELKV 316 (873)
Q Consensus 288 v-----~~~-~~~~~~~~l~~L~~~e~~~lf~~~~ 316 (873)
. ... ......+.+++++.++..+++....
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 2 111 1123458999999999999997543
No 216
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.65 E-value=0.0004 Score=77.23 Aligned_cols=177 Identities=13% Similarity=0.166 Sum_probs=99.3
Q ss_pred cccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 145 TVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
.++|.+..++++.+++.. ....-|.|+|++|+|||++|+++++.. ... .+.+.++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~---fv~vn~~------ 272 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP------ 272 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSE---EEEEEHH------
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCC---EEEEEch------
Confidence 579999999888877642 234568899999999999999998875 222 2333321
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccc-------------cccccccCCC-CCCCCc
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD-------------LDQVGLPIPS-RTSVSN 277 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~-~~~~gs 277 (873)
.+. ..+ ...........+.....+++.+|+||+++.... ...+...+.. ....+.
T Consensus 273 ~l~----~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 273 EIM----SKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp HHH----TSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred Hhh----hhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 111 000 111112222233334456788999999943210 1112111111 002345
Q ss_pred EEEEEccchh-hhhcc----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCc-hhHHHHH
Q 002863 278 KVVFTTREFE-VCGQM----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGL-PLALITV 348 (873)
Q Consensus 278 ~iivTtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 348 (873)
.||.||.... +...+ .....+.+...+.++-.+++..++..........+ .++++.+.|. +-.+..+
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 6666776543 21111 12346889999999999999988765442333333 5566677774 4444433
No 217
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.64 E-value=4.9e-05 Score=73.10 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=73.9
Q ss_pred chhhhcCCcceEEecCCC-CCC--------ccccCcccCCEEecCCCCCCc-----cchhhhcCCCCcEeeccccccccc
Q 002863 545 YHFFKSMASLRVLKLSHS-DLP--------CEISNLVSLQYLDLSNSIPDR-----LPLGLKYLVNLKCLNLEYTFRLSR 610 (873)
Q Consensus 545 ~~~~~~l~~Lr~L~L~~n-~lp--------~~i~~L~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~ 610 (873)
...+...+.|++|+|++| .+. ..+...++|++|+|++|.+.. +...+...++|++|+|++| .+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 345778999999999999 773 345667899999999998875 4555677789999999999 6665
Q ss_pred cC----hhhhCCCcccceEec--cccCCCchhh----HHHhcCCCCCceeEEE
Q 002863 611 IS----PQVISNLKMLRVLRM--FECGSFLDSL----VEELLGLEHLNVLTIT 653 (873)
Q Consensus 611 l~----~~~i~~l~~L~~L~l--~~~~~~~~~~----~~~l~~l~~L~~L~l~ 653 (873)
-. ...+...++|++|++ .+| .+.... ...+...++|+.|+++
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 22 223677788999999 554 333332 2233344555555553
No 218
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.63 E-value=4.4e-05 Score=77.30 Aligned_cols=79 Identities=22% Similarity=0.195 Sum_probs=56.5
Q ss_pred CCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCCC--ccccCcc--cCCEEecCCCCCCc-cc-------hhh
Q 002863 524 TSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDLP--CEISNLV--SLQYLDLSNSIPDR-LP-------LGL 591 (873)
Q Consensus 524 ~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~lp--~~i~~L~--~L~~L~L~~~~i~~-lp-------~~i 591 (873)
.+++|++|+|++|.++.++..+..+..+++|++|+|++|.|. ..+..+. +|++|+|++|.+.. +| ..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 466788888888888776533466778899999999998663 2455555 89999999887753 33 235
Q ss_pred hcCCCCcEeec
Q 002863 592 KYLVNLKCLNL 602 (873)
Q Consensus 592 ~~l~~L~~L~L 602 (873)
..+++|+.||-
T Consensus 248 ~~~P~L~~LDg 258 (267)
T 3rw6_A 248 ERFPKLLRLDG 258 (267)
T ss_dssp HHCTTCCEESS
T ss_pred HHCcccCeECC
Confidence 67777777763
No 219
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.60 E-value=0.00098 Score=70.64 Aligned_cols=171 Identities=19% Similarity=0.156 Sum_probs=92.3
Q ss_pred CcccchhHHHHHHHHHHhc-----CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLME-----EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIA 218 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 218 (873)
+.++|.+..++.+...+.. +....+.|+|++|+||||||+.+++.. . ..|. ....+-.....+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l-~--~~~~---~~sg~~~~~~~~------ 92 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL-Q--TNIH---VTSGPVLVKQGD------ 92 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH-T--CCEE---EEETTTCCSHHH------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh-C--CCEE---EEechHhcCHHH------
Confidence 3578888777777666543 234679999999999999999999976 2 2221 111110011111
Q ss_pred HHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--ccccccccCCC---------CC--------CCCcEE
Q 002863 219 KKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--DLDQVGLPIPS---------RT--------SVSNKV 279 (873)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~---------~~--------~~gs~i 279 (873)
.. .+...+ .++-++++|++.... ..+.+...+.. +. -....+
T Consensus 93 -----------------l~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 93 -----------------MA-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp -----------------HH-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred -----------------HH-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 11 111111 234577788875421 11111100000 00 011122
Q ss_pred E-EEccchhhhhccc--cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHHH
Q 002863 280 V-FTTREFEVCGQME--AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALITV 348 (873)
Q Consensus 280 i-vTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 348 (873)
+ .|++...+...+. ....+.+++.+.++-.+++.+.+..... .-..+.+..|++.+.|.|-.+..+
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHH
Confidence 2 3444433322111 1224789999999999999987753321 122466899999999999755443
No 220
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.60 E-value=7.4e-05 Score=73.07 Aligned_cols=113 Identities=25% Similarity=0.182 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcC----CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc
Q 002863 152 TFDRVWRCLMEE----HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES 227 (873)
Q Consensus 152 ~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 227 (873)
.++.+.+++... ....+.|+|++|+||||||+.+++.. . .....++|+.+ ..+...+......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~-~--~~~~~~~~~~~------~~~~~~~~~~~~~---- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL-A--KRNVSSLIVYV------PELFRELKHSLQD---- 103 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH-H--TTTCCEEEEEH------HHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEh------HHHHHHHHHHhcc----
Confidence 445555555433 12678899999999999999999887 2 22234556644 3444444332211
Q ss_pred ccccCHHHHHHHHHHHhccCCeEEEEeccccc--ccccc--ccc-cCCCCCCCCcEEEEEccc
Q 002863 228 WKNKSMQEKAQQIFNILSKKKFVLLLDDMWEL--VDLDQ--VGL-PIPSRTSVSNKVVFTTRE 285 (873)
Q Consensus 228 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~--~~~-~l~~~~~~gs~iivTtR~ 285 (873)
....... ..+.+. -+|||||++.. .+|.. +.. .+......+.++|+||..
T Consensus 104 ---~~~~~~~----~~~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ---QTMNEKL----DYIKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHH----HHHHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---chHHHHH----HHhcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 1122222 222222 39999999652 34432 211 111100234578888864
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.59 E-value=0.0011 Score=67.30 Aligned_cols=176 Identities=16% Similarity=0.121 Sum_probs=92.0
Q ss_pred CcccchhHHHHHHHHHH---hc---------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCL---ME---------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.+..++++.+.+ .. ...+-+.|+|++|+||||+|+.+++.. ...| +.+..+.-..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 46899988777765543 21 113357899999999999999999876 2222 3333222100
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccc----------------cccccccCCC-CCC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD----------------LDQVGLPIPS-RTS 274 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~-~~~ 274 (873)
.............+.......+.++++|+++.... ...+...+.. ...
T Consensus 84 ---------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 ---------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ---------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred ---------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 00111222222222333345678999999843210 0011111110 002
Q ss_pred CCcEEEEEccchhh-hhcc-c---cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCC-chhHHH
Q 002863 275 VSNKVVFTTREFEV-CGQM-E---AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGG-LPLALI 346 (873)
Q Consensus 275 ~gs~iivTtR~~~v-~~~~-~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~ 346 (873)
.+..||.||...+. .... . ....+.+...+.++-.++++............. ...++..+.| .+--+.
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHH
Confidence 34567777765532 1111 1 134567777788888888887764432222222 3456677777 554443
No 222
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.55 E-value=8.5e-05 Score=76.33 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=89.3
Q ss_pred CcccchhHHHHHHHHHHhc------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCLME------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.+..++.+.+.+.. ...+-+.|+|++|+|||++|+.+++.. . ..|- .+..+.-.+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~-~--~~~~---~v~~~~~~~~- 83 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-H--VPFF---SMGGSSFIEM- 83 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH-T--CCCC---CCCSCTTTTS-
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh-C--CCEE---EechHHHHHh-
Confidence 4689998887777665531 112347799999999999999999876 2 2221 1111110000
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc-----------------ccccccccCCCCC-
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV-----------------DLDQVGLPIPSRT- 273 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~~~~~l~~~~- 273 (873)
..+.. ....... +......++.+|++||++... ....+...+....
T Consensus 84 --------~~~~~-----~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 84 --------FVGLG-----ASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp --------CSSSC-----SSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred --------hcchH-----HHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 00100 0011111 112223467899999996421 1122222222110
Q ss_pred -CCCcEEEEEccchhhhh-cc----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch
Q 002863 274 -SVSNKVVFTTREFEVCG-QM----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 274 -~~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
.....||.||....... .. .....+.+...+.++-.++++..+..........+ ..|++.+.|.|
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~----~~la~~~~g~~ 218 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNL----QEVAKLTAGLA 218 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCT----TTTTSSSCSSC
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCH----HHHHHHcCCCC
Confidence 12245667776553211 11 12346788899999999999887654322222222 23555566654
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.55 E-value=0.00034 Score=83.26 Aligned_cols=152 Identities=13% Similarity=0.112 Sum_probs=83.0
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCC--ceEEEEEeCCcccHHHHHHHHHHHh
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF--DFVIWVVVSRDLQLEKIQEIIAKKI 221 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l 221 (873)
+.++||+++++++.+.|......-+.++|++|+|||++|+.+++........+ ...-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 35899999999999999776555678999999999999999988752211111 0111111111
Q ss_pred CCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhhh------c-ccc
Q 002863 222 GLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVCG------Q-MEA 294 (873)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~------~-~~~ 294 (873)
+.. +...........+......++.+|++|. .......+...+. ....++|.||....... . ...
T Consensus 245 g~~---~~G~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~---~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 245 GTK---YRGEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred ccc---ccchHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh---cCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 000 0000011111222223346788999992 1122222333332 23456777666544211 0 012
Q ss_pred ccceeeccCChhhhHHHHHHHhcC
Q 002863 295 HRSFKVECLRYDDAWKLFELKVGA 318 (873)
Q Consensus 295 ~~~~~l~~L~~~e~~~lf~~~~~~ 318 (873)
...+.++..+.++..+++......
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHH
Confidence 246899999999999999876543
No 224
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.54 E-value=0.00049 Score=82.01 Aligned_cols=154 Identities=14% Similarity=0.218 Sum_probs=89.8
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCC---CCceEEEE-EeCCcccHHHHHHHHHH
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPN---HFDFVIWV-VVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv-~~s~~~~~~~~~~~i~~ 219 (873)
+.++||+.+++++++.|......-+.|+|++|+||||+|+.+++....... .....+|. ..+.-.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~----------- 254 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL----------- 254 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-----------
Confidence 357999999999999998766667789999999999999999886521110 12223321 111100
Q ss_pred HhCCCCccccccCHHHHHHHHHHHhc-cCCeEEEEecccccc--------c---cccccccCCCCCCCCcEEEEEccchh
Q 002863 220 KIGLFNESWKNKSMQEKAQQIFNILS-KKKFVLLLDDMWELV--------D---LDQVGLPIPSRTSVSNKVVFTTREFE 287 (873)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--------~---~~~~~~~l~~~~~~gs~iivTtR~~~ 287 (873)
.+ .. .....+.....+.+.+. .++.+|++||++... . ...+...+. ..+..+|.+|...+
T Consensus 255 -~~---~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~---~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 255 -AG---TK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---SGKIRVIGSTTYQE 326 (758)
T ss_dssp -CC---CC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS---SCCCEEEEEECHHH
T ss_pred -cc---cc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh---CCCeEEEEEeCchH
Confidence 00 00 11233444444444443 457899999997431 1 111222222 23456777666543
Q ss_pred hhhcc-------ccccceeeccCChhhhHHHHHHHh
Q 002863 288 VCGQM-------EAHRSFKVECLRYDDAWKLFELKV 316 (873)
Q Consensus 288 v~~~~-------~~~~~~~l~~L~~~e~~~lf~~~~ 316 (873)
..... .....+.++..+.++..+++...+
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 21111 112358899999999998887654
No 225
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.51 E-value=0.00063 Score=74.96 Aligned_cols=172 Identities=15% Similarity=0.157 Sum_probs=94.6
Q ss_pred CcccchhHHHHHHHHHHh---cC---------CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCLM---EE---------HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.++.++++.+.+. .. -.+-|.|+|++|+||||||+.+++.. ...| +.+.++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 458999887777665532 21 12347899999999999999999876 2222 23333321110
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccc----------------cccccccCCC-CCC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD----------------LDQVGLPIPS-RTS 274 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~-~~~ 274 (873)
+...........+.....+.+.+|+||+++.... ...+...+.. ...
T Consensus 89 ----------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ----------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ----------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0001111122223333456789999999964210 1111111110 002
Q ss_pred CCcEEEEEccchhhhh-c-cc---cccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch
Q 002863 275 VSNKVVFTTREFEVCG-Q-ME---AHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 275 ~gs~iivTtR~~~v~~-~-~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
.+..||.||...+... . .. ....+.++..+.++-.++++.++.........+ ...+++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 3556777777664422 1 11 233678888888888888887765443222222 344778888876
No 226
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.42 E-value=5.6e-05 Score=69.19 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=33.6
Q ss_pred cccchhHHHHHHHHHHhc--CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQLTFDRVWRCLME--EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.++|++..++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 478999988888887653 233346799999999999999988765
No 227
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.42 E-value=0.00063 Score=71.40 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=37.8
Q ss_pred CcccchhHHHHHHHHHHhc--------------CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLME--------------EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.++|.+..++.+...+.. .....+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999988877753 234567899999999999999999876
No 228
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.29 E-value=5.3e-05 Score=69.73 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=34.8
Q ss_pred cccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeC
Q 002863 145 TVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVS 205 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 205 (873)
.++|..... +..|..-....++|+|+.|+|||||++.+++.. .. ..+ .++++...
T Consensus 19 f~~g~n~~~---~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~-~~-~g~-~~~~~~~~ 73 (149)
T 2kjq_A 19 FLGTENAEL---VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQA-LE-AGK-NAAYIDAA 73 (149)
T ss_dssp CCSCCTHHH---HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHH-HT-TTC-CEEEEETT
T ss_pred cCcCccHHH---HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHH-Hh-cCC-cEEEEcHH
Confidence 344544332 333333245689999999999999999999977 22 222 25555544
No 229
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.19 E-value=0.00087 Score=70.37 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=37.4
Q ss_pred cccchhHHHHHHHHHHhcC---------CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQLTFDRVWRCLMEE---------HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.++|.+..++.+...+... ....+.++|++|+||||+|+.+++..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 4789999988888877542 13589999999999999999999876
No 230
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.13 E-value=0.0026 Score=70.54 Aligned_cols=46 Identities=24% Similarity=0.201 Sum_probs=35.5
Q ss_pred CcccchhHHHHHHHHHH---hcC--CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCL---MEE--HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L---~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.++|.++.++.+..++ ..+ ..+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 56899998877654443 333 23568899999999999999999876
No 231
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.04 E-value=0.003 Score=73.77 Aligned_cols=171 Identities=12% Similarity=0.139 Sum_probs=94.8
Q ss_pred cccchhHHHHHHHHHHh----c---------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 145 TVVGLQLTFDRVWRCLM----E---------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+++++.. ..+ .+.|..+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~------ 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP------ 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhH------
Confidence 46788887777766542 1 134578899999999999999999986 222 2333322
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEecccccc--------c-----cccccccCCCC-CCCCc
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELV--------D-----LDQVGLPIPSR-TSVSN 277 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~~~~~l~~~-~~~gs 277 (873)
++. +. +.......+...+....+..+.+|++|+++... + ..++...+... ...+.
T Consensus 273 ~l~-------sk----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 273 EIM-------SK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp HHH-------SS----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred Hhh-------cc----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 111 00 011112222222223335678999999996421 0 01111111110 02233
Q ss_pred EEEEEccchhhh-hcc----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch
Q 002863 278 KVVFTTREFEVC-GQM----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 278 ~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
.||.||...+.. ..+ .-.+.+++...+.++-.++|+.+........+.+ ...|++++.|.-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 456666654321 111 1345688888888888999987765443333333 356778888764
No 232
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.03 E-value=0.00078 Score=70.22 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=37.0
Q ss_pred CcccchhHHHHHHHHHHhc--CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLME--EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3579999999988887754 334457799999999999999998865
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.00 E-value=0.005 Score=63.74 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+.++|++|+|||+||+.+++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999987
No 234
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.91 E-value=0.008 Score=61.71 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=87.8
Q ss_pred CcccchhHHHHHHHHHHh---c---------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCLM---E---------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.++.++++.+... . .-.+-+.|+|++|+||||||+.+++.. . . ..+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~-~--~---~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R--V---PFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT-T--C---CEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc-C--C---CEEEecHH------
Confidence 468898877666654432 1 011228899999999999999999876 2 1 12333211
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEecccccc------------c----cccccccCCCCCC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELV------------D----LDQVGLPIPSRTS 274 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~~~~ 274 (873)
.+. ... .. ........+.+.. ...+.++|+|++.... . ...+...+..+..
T Consensus 108 ~~~----~~~-------~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 DFV----EMF-------VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp HHH----HST-------TT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred HHH----HHH-------hh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 111 000 00 0111122222222 2457899999995310 0 1111111222111
Q ss_pred -CCcEEEEEccchhhhhc-----cccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch
Q 002863 275 -VSNKVVFTTREFEVCGQ-----MEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 275 -~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
....++.||...++... ......+.++..+.++-.+++...+.......... ...++..+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 12344456665544221 12345678888888888888887764332222222 345677777754
No 235
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.87 E-value=0.0028 Score=75.32 Aligned_cols=172 Identities=13% Similarity=0.155 Sum_probs=91.8
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccH
Q 002863 144 PTVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 210 (873)
++++|.+..++++.+++.. .....|.|+|++|+||||||+.+++.. ...| +.+..+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~----- 272 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGP----- 272 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEch-----
Confidence 3578999888888877642 234578999999999999999998875 2222 333321
Q ss_pred HHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhccCCeEEEEeccccccc-------------cccccccCCCC-CCCC
Q 002863 211 EKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILSKKKFVLLLDDMWELVD-------------LDQVGLPIPSR-TSVS 276 (873)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~~-~~~g 276 (873)
++. +.. ...........+.....+.+.++++|++..... ...+...+... ...+
T Consensus 273 -~l~-------~~~----~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 273 -EIM-------SKL----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -HHS-------SSS----TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred -Hhh-------hhh----hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 110 000 111111122222233345788999999953210 01111111110 0223
Q ss_pred cEEEEEccchh-hhhcc----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch
Q 002863 277 NKVVFTTREFE-VCGQM----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 277 s~iivTtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
..+|.||...+ +...+ .....+.+...+.++-.+++...+..........+ .++++.+.|..
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l----~~la~~t~g~~ 407 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCT----HHHHHSCSSCC
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchh----HHHHHhhcCcc
Confidence 45666666542 21111 12245677888888888998877654432222333 34555565543
No 236
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.86 E-value=0.015 Score=59.25 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=80.6
Q ss_pred CcccchhHHHHHHHHHHhc-------------C-CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCccc
Q 002863 144 PTVVGLQLTFDRVWRCLME-------------E-HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ 209 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-------------~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 209 (873)
+++.|.++.+++|.+.+.. . ..+ +.++|++|+||||||+.++... .. ..+++..+.-.+
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~-~~-----~~i~i~g~~l~~ 82 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANES-GL-----NFISVKGPELLN 82 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHT-TC-----EEEEEETTTTCS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHc-CC-----CEEEEEcHHHHh
Confidence 4578888888777665421 1 223 8999999999999999999876 21 234444322110
Q ss_pred HHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEeccccccc---------ccc----ccccCCCCC-C
Q 002863 210 LEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELVD---------LDQ----VGLPIPSRT-S 274 (873)
Q Consensus 210 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~---------~~~----~~~~l~~~~-~ 274 (873)
. +. .........+.+.. ...+.++++|++..... ... +...+..+. .
T Consensus 83 ~-----------------~~-~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 83 M-----------------YV-GESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp S-----------------TT-HHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred h-----------------hh-hHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 0 00 00111122222222 34678999999964210 000 111111110 1
Q ss_pred CCcEEEEEccchhhhhcc-----ccccceeeccCChhhhHHHHHHHhc
Q 002863 275 VSNKVVFTTREFEVCGQM-----EAHRSFKVECLRYDDAWKLFELKVG 317 (873)
Q Consensus 275 ~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~lf~~~~~ 317 (873)
...-++.+|...++.... .-...+.++..+.++-.++|+....
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 233455667666553211 2345678888889999999988764
No 237
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.84 E-value=0.0095 Score=65.98 Aligned_cols=168 Identities=15% Similarity=0.162 Sum_probs=90.2
Q ss_pred CcccchhHHHHHHHHHH---hcC---------CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCL---MEE---------HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.++.++++.+.. ... -.+-|.|+|++|+||||||+.+++.. . .. .+.+..+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~-~--~~---~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R--VP---FITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT-T--CC---EEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-C--CC---EEEEehhHHHH--
Confidence 56899988777665543 221 12238899999999999999999876 2 22 23333322100
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHhc----cCCeEEEEeccccccc----------------cccccccCCC
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS----KKKFVLLLDDMWELVD----------------LDQVGLPIPS 271 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~~~----------------~~~~~~~l~~ 271 (873)
.........++..++ ..+.++++|++..... ...+...+..
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 001111222333332 2357999999953210 0111111111
Q ss_pred CC-CCCcEEEEEccchhhhhc-c----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch
Q 002863 272 RT-SVSNKVVFTTREFEVCGQ-M----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 272 ~~-~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
.. ..+..|+.||...++... . .....+.++..+.++-.++++.++.......+.. ...|++.+.|..
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 10 223456666666654221 1 1234678888888888888887654322122222 345677777754
No 238
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.84 E-value=0.0075 Score=61.01 Aligned_cols=171 Identities=15% Similarity=0.173 Sum_probs=86.8
Q ss_pred CcccchhHHHHHHHHHHh---c---------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH
Q 002863 144 PTVVGLQLTFDRVWRCLM---E---------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 211 (873)
++++|.++.+.++.+... . .-.+-+.|+|++|+||||||+.+++.. . .. .+.+.. .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~-~--~~---~i~~~~------~ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R--VP---FITASG------S 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT-T--CC---EEEEEH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--CC---EEEeeH------H
Confidence 457888776666544332 1 011228899999999999999999876 2 11 222321 1
Q ss_pred HHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEecccccc------------c----cccccccCCCCC-
Q 002863 212 KIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELV------------D----LDQVGLPIPSRT- 273 (873)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~~~- 273 (873)
.+. ... .. ........+.+.. ...+.++++|++.... . ...+...+..+.
T Consensus 84 ~~~----~~~-------~~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 DFV----EMF-------VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp HHH----HSC-------TT-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred HHH----HHH-------hh-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 111 000 00 0111122233333 2456899999994311 0 111111121110
Q ss_pred CCCcEEEEEccchhhhhc-c----ccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCch
Q 002863 274 SVSNKVVFTTREFEVCGQ-M----EAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLP 342 (873)
Q Consensus 274 ~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 342 (873)
....-++.||...++... . .....+.++..+.++-.++++..+.......... ...+++.+.|.-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 122344556665554221 1 1234678888888888888887764332222222 345677777643
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.76 E-value=0.0076 Score=68.14 Aligned_cols=45 Identities=31% Similarity=0.358 Sum_probs=34.7
Q ss_pred cccchhHHHHHHHHHHhc------CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQLTFDRVWRCLME------EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+++|.++..+.+.+.+.- ....++.++|++|+||||||+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 468887777776554321 245689999999999999999999876
No 240
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.70 E-value=0.0023 Score=76.09 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=37.4
Q ss_pred CcccchhHHHHHHHHHHhcC---------CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLMEE---------HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..++|.+..++.+.+.+... ....+.++|++|+|||++|+.+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999998888877531 22378999999999999999999875
No 241
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.62 E-value=0.0062 Score=64.21 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=58.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc---ccccCHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES---WKNKSMQEKAQQI 240 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 240 (873)
.-+++.|+|++|+||||||.+++..... .=..++|++....++.. .+++++...+. ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 4569999999999999999999877521 11247788877666643 45666654321 1234556666655
Q ss_pred HHHhc-cCCeEEEEecccc
Q 002863 241 FNILS-KKKFVLLLDDMWE 258 (873)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~~ 258 (873)
...++ .+.-++|+|.+..
T Consensus 132 ~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHTSCCSEEEEECTTT
T ss_pred HHHhhhcCCCeEEehHhhh
Confidence 55554 5667999999843
No 242
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.61 E-value=0.0011 Score=67.95 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=45.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEe--CCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV--SRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN 242 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (873)
.+++.|+|++|+||||||.+++... .. .+.|+++ .... .. ...+.+.....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G~-----~VlyIs~~~eE~v-------------~~-----~~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-GG-----KDKYATVRFGEPL-------------SG-----YNTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-HT-----TSCCEEEEBSCSS-------------TT-----CBCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-CC-----CEEEEEecchhhh-------------hh-----hhcCHHHHHHHHHH
Confidence 4577899999999999999988752 11 1345555 2221 10 01345666666777
Q ss_pred HhccCCeEEEEecccc
Q 002863 243 ILSKKKFVLLLDDMWE 258 (873)
Q Consensus 243 ~l~~k~~LlVlDdv~~ 258 (873)
.+...+ +||+|++..
T Consensus 179 ~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHCS-EEEEECCTT
T ss_pred HHhhCC-EEEEecccc
Confidence 776666 999999843
No 243
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.55 E-value=0.0071 Score=60.59 Aligned_cols=92 Identities=14% Similarity=0.190 Sum_probs=54.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCC----CCceEEEEEeCCcccHHHHHHHHHHHhCCCCc----c---ccccC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPN----HFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNE----S---WKNKS 232 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 232 (873)
.-.++.|+|++|+|||||+..++... .... .-..++|+.....+....+. .+++.++.... . ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 34699999999999999999998753 1111 13578888877655544443 34455554321 0 01122
Q ss_pred HHH---HHHHHHHHhc-cCCeEEEEeccc
Q 002863 233 MQE---KAQQIFNILS-KKKFVLLLDDMW 257 (873)
Q Consensus 233 ~~~---~~~~l~~~l~-~k~~LlVlDdv~ 257 (873)
..+ ....+.+.+. .+.-+||+|.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 222 2333444553 467789999984
No 244
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.47 E-value=0.0064 Score=59.89 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=51.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCc---------c-ccccCH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNE---------S-WKNKSM 233 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~-~~~~~~ 233 (873)
...++.|+|++|+||||||..++. . . -..++|+.....++...+.. +.+..+.... . ......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 346999999999999999999887 3 1 13578888766555555443 3333332110 0 011111
Q ss_pred HHHHHHHHHHhccCCeEEEEeccc
Q 002863 234 QEKAQQIFNILSKKKFVLLLDDMW 257 (873)
Q Consensus 234 ~~~~~~l~~~l~~k~~LlVlDdv~ 257 (873)
......++..+..+.-+||+|.+.
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcH
Confidence 233444444444457789999874
No 245
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.33 E-value=0.013 Score=61.59 Aligned_cols=91 Identities=18% Similarity=0.310 Sum_probs=56.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCC----CCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc-------ccccC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPN----HFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES-------WKNKS 232 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 232 (873)
...++.|+|.+|+||||||..++... .... .-..++|++....++..++.+ +++.++..... ....+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCC
Confidence 34699999999999999999988764 1110 024789999888777766653 45666553210 01122
Q ss_pred HH---HHHHHHHHHhc--cCCeEEEEecc
Q 002863 233 MQ---EKAQQIFNILS--KKKFVLLLDDM 256 (873)
Q Consensus 233 ~~---~~~~~l~~~l~--~k~~LlVlDdv 256 (873)
.+ +....+...++ .+.-+||+|.+
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 22 23444555553 35568888887
No 246
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.29 E-value=0.017 Score=61.11 Aligned_cols=91 Identities=14% Similarity=0.243 Sum_probs=55.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCC----CCceEEEEEeCCcccHHHHHHHHHHHhCCCCc---------c-cc
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPN----HFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNE---------S-WK 229 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~-~~ 229 (873)
...++.|+|.+|+||||||..++... .... .-..++|++....++..++.. +++.++.... . ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 45799999999999999999988764 1111 224788999888777766543 4455554321 0 01
Q ss_pred ccCHHHHHHHHHHHhc---cCCeEEEEecc
Q 002863 230 NKSMQEKAQQIFNILS---KKKFVLLLDDM 256 (873)
Q Consensus 230 ~~~~~~~~~~l~~~l~---~k~~LlVlDdv 256 (873)
.....+....+...++ .+.-+||+|.+
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 1111233334444443 44558888887
No 247
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.20 E-value=0.016 Score=59.21 Aligned_cols=87 Identities=11% Similarity=0.163 Sum_probs=56.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc---cccCHHHH-HHHHH
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW---KNKSMQEK-AQQIF 241 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~ 241 (873)
+++-|+|++|+||||||.+++....+ ...=..++||+....++.. .+++++...+.. ...+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 37899999999999999888766521 1112468899888777653 367777654321 23344444 33222
Q ss_pred HH--h-ccCCeEEEEecccc
Q 002863 242 NI--L-SKKKFVLLLDDMWE 258 (873)
Q Consensus 242 ~~--l-~~k~~LlVlDdv~~ 258 (873)
.. + +++.-+||+|-|..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 22 2 45778999999954
No 248
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.13 E-value=0.016 Score=61.57 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=56.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc---ccccCHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES---WKNKSMQEKAQQI 240 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 240 (873)
...++.|+|.+|+||||||..++..... . -..++|++....++.. .++.++...+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~-~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK-A--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH-T--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH-C--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 3458899999999999999988776521 1 2368899988766643 24556654221 1223556666666
Q ss_pred HHHhc-cCCeEEEEeccc
Q 002863 241 FNILS-KKKFVLLLDDMW 257 (873)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~ 257 (873)
....+ ++.-+||+|.+.
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 65554 345699999984
No 249
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.10 E-value=0.016 Score=61.21 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=56.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc---ccccCHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES---WKNKSMQEKAQQI 240 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 240 (873)
.-.++.|+|.+|+||||||.++...... .=..++|++....++.. .++.++...+. ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4568999999999999999998866521 11357889887766543 35556654321 1223455555555
Q ss_pred HHHhc-cCCeEEEEecccc
Q 002863 241 FNILS-KKKFVLLLDDMWE 258 (873)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~~ 258 (873)
....+ .+.-+||+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 54443 4567999999843
No 250
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.01 E-value=0.0061 Score=63.48 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHhcC---CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 149 LQLTFDRVWRCLMEE---HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 149 r~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+....+.+.+++... ....+.|+|++|+|||+||+++++..
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 333444555566542 24678899999999999999999876
No 251
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.00 E-value=0.0029 Score=62.01 Aligned_cols=114 Identities=15% Similarity=0.008 Sum_probs=61.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNI 243 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (873)
...++.|+|..|+||||++..+.++. .. .... ++.+....... ....++..++............+..+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~-~~-~g~k-Vli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL-EY-ADVK-YLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH-HH-TTCC-EEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH-Hh-cCCE-EEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 45688999999999999998888776 21 2222 33443332211 1123445555433222223334444444444
Q ss_pred hccCC-eEEEEeccccc--cccccccccCCCCCCCCcEEEEEccchh
Q 002863 244 LSKKK-FVLLLDDMWEL--VDLDQVGLPIPSRTSVSNKVVFTTREFE 287 (873)
Q Consensus 244 l~~k~-~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~ 287 (873)
+.+.+ -+||+|.+... ...+.+. .+. ..|..||+|-++.+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~---~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVAN-ILA---ENGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHH-HHH---HTTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHH-HHH---hCCCeEEEEecccc
Confidence 44444 49999999642 1222221 111 12568999988543
No 252
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.98 E-value=0.0044 Score=58.76 Aligned_cols=117 Identities=19% Similarity=0.193 Sum_probs=59.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC---cccHHHHHHHHHH---HhCCCCccccccC------
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR---DLQLEKIQEIIAK---KIGLFNESWKNKS------ 232 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~---~l~~~~~~~~~~~------ 232 (873)
...|.|++..|.||||.|-...-+.. ...+. +.++..-. ......++..+.- +.+. .-.+...+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~--g~G~r-V~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~-gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV--GHGKN-VGVVQFIKGTWPNGERNLLEPHGVEFQVMAT-GFTWETQNREADTA 103 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH--HTTCC-EEEEESSCCSSCCHHHHHHGGGTCEEEECCT-TCCCCGGGHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--HCCCe-EEEEEeeCCCCCccHHHHHHhCCcEEEEccc-ccccCCCCcHHHHH
Confidence 35677777777999999988776651 22332 44443322 2334444444310 0000 00011111
Q ss_pred -HHHHHHHHHHHhccCCe-EEEEeccccc-----cccccccccCCCCCCCCcEEEEEccch
Q 002863 233 -MQEKAQQIFNILSKKKF-VLLLDDMWEL-----VDLDQVGLPIPSRTSVSNKVVFTTREF 286 (873)
Q Consensus 233 -~~~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~~~~~l~~~~~~gs~iivTtR~~ 286 (873)
........++.+...+| |||||++-.. .+.+++...+... .....||+|+|..
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p~~~~vIlTGr~a 163 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-cCCCEEEEECCCC
Confidence 12223344455555555 9999998532 2233333333333 4556899999985
No 253
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.96 E-value=0.026 Score=59.89 Aligned_cols=164 Identities=10% Similarity=-0.072 Sum_probs=98.2
Q ss_pred HHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHH
Q 002863 156 VWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQE 235 (873)
Q Consensus 156 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 235 (873)
+.+.+.+.-.++..++|+.|.||++.|+.+.+... ...|+....+.+....++.++...+..
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------- 70 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQA---------------- 70 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHHH----------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhcC----------------
Confidence 34444434567899999999999999999887651 123432222223333344333322210
Q ss_pred HHHHHHHHhccCCeEEEEecccc-c--cccccccccCCCCCCCCcEEEEEccc-------hhhhhc-cccccceeeccCC
Q 002863 236 KAQQIFNILSKKKFVLLLDDMWE-L--VDLDQVGLPIPSRTSVSNKVVFTTRE-------FEVCGQ-MEAHRSFKVECLR 304 (873)
Q Consensus 236 ~~~~l~~~l~~k~~LlVlDdv~~-~--~~~~~~~~~l~~~~~~gs~iivTtR~-------~~v~~~-~~~~~~~~l~~L~ 304 (873)
.-+.+++-++|+|+++. . ..++.+...+... ..++.+|++|.. ..+... ......++..+++
T Consensus 71 ------~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p-~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 71 ------MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLL-HDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp ------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTC-BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred ------cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcC-CCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 11345677889999865 2 3445554444433 456677766543 123222 2345678999999
Q ss_pred hhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCchhHHHH
Q 002863 305 YDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGLPLALIT 347 (873)
Q Consensus 305 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 347 (873)
+++....+.+.+.......+ ++.+..+++.++|.+.++..
T Consensus 144 ~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHH
Confidence 99999888887754332122 45678899999998876654
No 254
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.92 E-value=0.0082 Score=58.22 Aligned_cols=42 Identities=24% Similarity=0.399 Sum_probs=33.7
Q ss_pred chhHHHHHHHHHHhc---CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 148 GLQLTFDRVWRCLME---EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 148 gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|++.++++.+.+.. ....+|+|.|+.|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 355677778777764 356799999999999999999998765
No 255
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.90 E-value=0.021 Score=60.46 Aligned_cols=86 Identities=20% Similarity=0.164 Sum_probs=54.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc---cccCHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW---KNKSMQEKAQQI 240 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (873)
...++.|.|.+|+||||||..++..... . -..++|++....++.. .++.++...+.. ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~-~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR-E--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-C--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 4468999999999999999988876521 1 1358899887776643 245566533211 122344444444
Q ss_pred HHHh-ccCCeEEEEeccc
Q 002863 241 FNIL-SKKKFVLLLDDMW 257 (873)
Q Consensus 241 ~~~l-~~k~~LlVlDdv~ 257 (873)
.... .++.-+||+|.+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 4443 3456699999984
No 256
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.87 E-value=0.02 Score=60.18 Aligned_cols=91 Identities=14% Similarity=0.275 Sum_probs=56.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccC------------CCCC--ceEEEEEeCCcccHHHHHHHHHHHhCCCCcc--
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDT------------PNHF--DFVIWVVVSRDLQLEKIQEIIAKKIGLFNES-- 227 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-- 227 (873)
...++.|+|.+|+||||+|..++... .. .... ..++|++....++..++.+ +++.++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~-~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL-QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVL 174 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT-TCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHh
Confidence 45799999999999999999887653 11 1111 4788999888777776654 45566653210
Q ss_pred -----ccccCHH---HHHHHHHHHhcc--CCeEEEEecc
Q 002863 228 -----WKNKSMQ---EKAQQIFNILSK--KKFVLLLDDM 256 (873)
Q Consensus 228 -----~~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv 256 (873)
....+.+ +....+...++. +.-+||+|.+
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112222 233444455543 4458888887
No 257
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.80 E-value=0.0062 Score=63.82 Aligned_cols=53 Identities=15% Similarity=0.045 Sum_probs=35.0
Q ss_pred HHHHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc
Q 002863 155 RVWRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL 208 (873)
Q Consensus 155 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 208 (873)
++++.+.. .....++|+|++|+|||||++.+.+...+....++++ ++-+.+..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCCh
Confidence 34555543 3456899999999999999999887642212344443 56677553
No 258
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.76 E-value=0.044 Score=59.29 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988776
No 259
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.74 E-value=0.028 Score=55.76 Aligned_cols=87 Identities=17% Similarity=0.144 Sum_probs=49.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc----------------
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW---------------- 228 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---------------- 228 (873)
-.+++|+|++|+|||||++.++....... ..+.|+.... ...++...+. .++......
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccC
Confidence 45899999999999999999886541111 2356665433 3444443332 444321110
Q ss_pred -----cccCHHHHHHHHHHHhc-cCCe--EEEEeccc
Q 002863 229 -----KNKSMQEKAQQIFNILS-KKKF--VLLLDDMW 257 (873)
Q Consensus 229 -----~~~~~~~~~~~l~~~l~-~k~~--LlVlDdv~ 257 (873)
...+..+....+...+. .++- ++|+|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 11144555555555443 2444 89999985
No 260
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.71 E-value=0.012 Score=69.98 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=37.1
Q ss_pred CcccchhHHHHHHHHHHhc---------CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLME---------EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..++|.++.++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999988888777652 123478999999999999999998876
No 261
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.64 E-value=0.047 Score=53.95 Aligned_cols=59 Identities=25% Similarity=0.314 Sum_probs=36.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhcc--CC-CCCceEEEEEeCCcccHHHHHHHHHHHhCC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFD--TP-NHFDFVIWVVVSRDLQLEKIQEIIAKKIGL 223 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 223 (873)
.-.+++|+|+.|+|||||++.++..... .. ..-...+|+.......... ...+.+..+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~ 85 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 85 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 4569999999999999999999874311 00 1234577887655434333 3334444443
No 262
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.62 E-value=0.012 Score=70.66 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=36.5
Q ss_pred cccchhHHHHHHHHHHhcC---------CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQLTFDRVWRCLMEE---------HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999888887776531 23578899999999999999998876
No 263
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.60 E-value=0.0084 Score=61.05 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=34.1
Q ss_pred CcccchhHHHHHHHHHHhc--CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLME--EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.++|.+..+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3578999988888776643 233467799999999999999999875
No 264
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.57 E-value=0.054 Score=58.21 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=53.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccC---CCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCcc-------ccccCH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDT---PNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNES-------WKNKSM 233 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 233 (873)
.-.++.|+|++|+|||||+..++-..... ...-..++|++....+....+. .+++.++..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCCh
Confidence 34699999999999999999775332010 1123468888877766555443 366666653210 011222
Q ss_pred H---HHHHHHHHHh-ccCCeEEEEeccc
Q 002863 234 Q---EKAQQIFNIL-SKKKFVLLLDDMW 257 (873)
Q Consensus 234 ~---~~~~~l~~~l-~~k~~LlVlDdv~ 257 (873)
. +....+...+ ..+.-+||+|.+-
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 2 2223333333 2456788888873
No 265
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.53 E-value=0.0098 Score=58.01 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhc--CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 151 LTFDRVWRCLME--EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 151 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+-.++|.+.+.. +...+|+|+|+.|+|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555555543 356799999999999999999998876
No 266
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.44 E-value=0.034 Score=58.82 Aligned_cols=93 Identities=23% Similarity=0.295 Sum_probs=54.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCC----ceEEEEEeCCcccHHHHHHHHHHHhCCCCcc-------ccc--
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF----DFVIWVVVSRDLQLEKIQEIIAKKIGLFNES-------WKN-- 230 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~-- 230 (873)
.-.++.|+|+.|+|||||+..++... ...... ..++|++....+....+ ..+++..+..... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 45799999999999999999988765 111111 24588887665544433 3355554432110 001
Q ss_pred -cCHHHHHHHHHHHhc------cCCeEEEEecccc
Q 002863 231 -KSMQEKAQQIFNILS------KKKFVLLLDDMWE 258 (873)
Q Consensus 231 -~~~~~~~~~l~~~l~------~k~~LlVlDdv~~ 258 (873)
....+....+...+. .+.-+||+|.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 112233344444443 4677999998843
No 267
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.37 E-value=0.044 Score=56.43 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=47.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC-cccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-DLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN 242 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (873)
...+++|+|++|+||||++..++... ...... .+..+.... .....+.+....+..+.+.. ...+..++...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS-MLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH-HHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 35699999999999999999988766 211121 344454332 12233334444444444321 1123333333333
Q ss_pred HhccCCeEEEEecc
Q 002863 243 ILSKKKFVLLLDDM 256 (873)
Q Consensus 243 ~l~~k~~LlVlDdv 256 (873)
.+ .+.=++|+|-.
T Consensus 179 ~~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 LF-SEYDHVFVDTA 191 (296)
T ss_dssp HG-GGSSEEEEECC
T ss_pred Hh-cCCCEEEEeCC
Confidence 33 44557888843
No 268
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.34 E-value=0.016 Score=51.37 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=42.7
Q ss_pred CEEecCCCCCC--ccchhhhcCCCCcEeeccccccccccChhhhCCCcccceEecccc
Q 002863 575 QYLDLSNSIPD--RLPLGLKYLVNLKCLNLEYTFRLSRISPQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 575 ~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~l~~~~i~~l~~L~~L~l~~~ 630 (873)
.+++.+++.++ .+|..+. .+|++|+|++| .++.+|++.|..+++|++|++.+|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence 46777777777 8886542 46889999988 888998888888899999998875
No 269
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.17 E-value=0.16 Score=54.87 Aligned_cols=101 Identities=18% Similarity=0.310 Sum_probs=62.2
Q ss_pred HHHHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-cHHHHHHHHHHHhCCC------Cc
Q 002863 155 RVWRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQEIIAKKIGLF------NE 226 (873)
Q Consensus 155 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~~ 226 (873)
+.++.|.. ..-.-++|.|.+|+|||+|++++.+.. .+.+-+.++++-+.+.. ...++.+++.+.-.+. ..
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~--~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV--AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHT--TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhh--HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 34555543 345689999999999999999998875 13344667788787654 4567777776653332 10
Q ss_pred c----ccccCHHHH------HHHHHHHh---ccCCeEEEEeccc
Q 002863 227 S----WKNKSMQEK------AQQIFNIL---SKKKFVLLLDDMW 257 (873)
Q Consensus 227 ~----~~~~~~~~~------~~~l~~~l---~~k~~LlVlDdv~ 257 (873)
. ..+...... .-.+-+++ +++.+|+++||+-
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0 011111111 11222333 4789999999984
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.08 E-value=0.011 Score=55.55 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+|+|.|++|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998876
No 271
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.08 E-value=0.011 Score=55.91 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=22.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+|.|.|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999876
No 272
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.05 E-value=0.084 Score=55.01 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=37.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKK 220 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 220 (873)
...++.|.|.+|+||||+|..++... .... ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 44689999999999999999988765 2222 567777655 4566666666654
No 273
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.03 E-value=0.014 Score=55.92 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+++|+|++|+||||+++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998753
No 274
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.98 E-value=0.012 Score=55.52 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
.+|+|.|++|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47899999999999999999 44
No 275
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.94 E-value=0.014 Score=61.54 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=37.2
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.++|+++.++.+...+..+. -+.++|++|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh
Confidence 357999999998888876543 57799999999999999998875
No 276
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.89 E-value=0.12 Score=53.95 Aligned_cols=58 Identities=26% Similarity=0.341 Sum_probs=36.1
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC-cccHHHHHHHHHHHhCC
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-DLQLEKIQEIIAKKIGL 223 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 223 (873)
....+++|+|+.|+||||+++.++..... ... .+.++...- .....+-++...+.+++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGF-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTC-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCC-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 35679999999999999999999887621 122 234443321 12333445555666664
No 277
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.88 E-value=0.027 Score=55.59 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 150 QLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 150 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
++..+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344555555555678899999999999999999988775
No 278
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.84 E-value=0.084 Score=54.47 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=50.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccH--HHHHHHHHHHhCCCCcc-ccccCHHHH-HHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL--EKIQEIIAKKIGLFNES-WKNKSMQEK-AQQ 239 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 239 (873)
...+|+|+|++|+||||++..++... ... . ..+.++... .+.. .+-+...++..++..-. ....+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l-~~~-g-~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF-VDE-G-KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH-HHT-T-CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH-Hhc-C-CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 45799999999999999999998876 211 1 134455443 2222 22234455555543210 012233333 223
Q ss_pred HHHHhccCCeEEEEeccc
Q 002863 240 IFNILSKKKFVLLLDDMW 257 (873)
Q Consensus 240 l~~~l~~k~~LlVlDdv~ 257 (873)
+...+..+.-++|+|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444455555688889763
No 279
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.84 E-value=0.13 Score=55.72 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|.++|++|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999988776
No 280
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.83 E-value=0.016 Score=54.94 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHHh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINN 187 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~ 187 (873)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 281
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.83 E-value=0.029 Score=58.50 Aligned_cols=43 Identities=26% Similarity=0.227 Sum_probs=32.6
Q ss_pred cchhHHHHHHHHHHh----cCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 147 VGLQLTFDRVWRCLM----EEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 147 vgr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
|+.+...+++++.+. .+....|.|+|++|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 445556666666654 3456679999999999999999888765
No 282
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.82 E-value=0.019 Score=55.60 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=24.8
Q ss_pred cCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 162 EEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 162 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.....+|+|+|+.|+||||+|+.+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3556899999999999999999998876
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.82 E-value=0.014 Score=56.38 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|+|++|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 284
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.80 E-value=0.023 Score=63.02 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=36.6
Q ss_pred cccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.++|+++.++.+...+..+. -|.++|++|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH
Confidence 47999999988887776543 67799999999999999999876
No 285
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.79 E-value=0.015 Score=55.23 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 286
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.71 E-value=0.014 Score=54.96 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998875
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.66 E-value=0.017 Score=55.08 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+.|.|+|++|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998876
No 288
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.66 E-value=0.031 Score=57.39 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=23.8
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999888765
No 289
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.65 E-value=0.068 Score=53.39 Aligned_cols=40 Identities=25% Similarity=0.173 Sum_probs=28.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 206 (873)
.-.++.|.|++|+||||||..++..... .=..++|+....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 3458999999999999999887665411 113577776554
No 290
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.64 E-value=0.21 Score=54.25 Aligned_cols=91 Identities=20% Similarity=0.174 Sum_probs=47.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC-cccHHHHHHHHHHHhCCCCcc-ccccCHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-DLQLEKIQEIIAKKIGLFNES-WKNKSMQEKAQQIF 241 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 241 (873)
..++|.++|.+|+||||++..++... ..+... .+..|++.. .....+.+.......++..-. ....+.........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l-~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL-REKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH-HHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 46799999999999999999988776 222122 244454432 222333333344444432100 01234455444444
Q ss_pred HHhccCCe-EEEEecc
Q 002863 242 NILSKKKF-VLLLDDM 256 (873)
Q Consensus 242 ~~l~~k~~-LlVlDdv 256 (873)
..++.+.| ++|+|-.
T Consensus 177 ~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHhCCCCEEEEECC
Confidence 44442223 6666764
No 291
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.63 E-value=0.11 Score=56.15 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=47.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHH--HHHHHHHHHhCCCCcc-ccccCHHHHHHHHH
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE--KIQEIIAKKIGLFNES-WKNKSMQEKAQQIF 241 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 241 (873)
..+|+|+|++|+||||++..++... ... .. .+..+.. +.+... +.++...+..+++.-. ....++.+......
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l-~~~-g~-~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY-KGK-GR-RPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH-HTT-TC-CEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHc-CC-eEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 4689999999999999999998876 222 22 2444443 333332 2234445555543111 01234444444444
Q ss_pred HHhccCCe-EEEEecc
Q 002863 242 NILSKKKF-VLLLDDM 256 (873)
Q Consensus 242 ~~l~~k~~-LlVlDdv 256 (873)
+.++.+.| ++|+|-.
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 44432333 6666754
No 292
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.62 E-value=0.099 Score=56.71 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=55.1
Q ss_pred HHHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-cHHHHHHHHHHHhCCCCc----ccc
Q 002863 156 VWRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQEIIAKKIGLFNE----SWK 229 (873)
Q Consensus 156 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~ 229 (873)
.++.|.. ..-..++|+|.+|+|||||+..+.... . ...-+..+++-+.+.. ...++.+++.+.-.+... ...
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~-~-~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~ 218 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI-A-QEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQM 218 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHH-H-HHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECT
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhh-h-hccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcC
Confidence 3455533 133468899999999999999988775 1 1122345666676654 445566555432111000 001
Q ss_pred ccCHHHH------HHHHHHHh---ccCCeEEEEeccc
Q 002863 230 NKSMQEK------AQQIFNIL---SKKKFVLLLDDMW 257 (873)
Q Consensus 230 ~~~~~~~------~~~l~~~l---~~k~~LlVlDdv~ 257 (873)
...+... .-.+.+++ ++++.|+++||+.
T Consensus 219 ~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 219 NEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1111111 11223333 5889999999994
No 293
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.61 E-value=0.041 Score=48.75 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=39.4
Q ss_pred EEEeeccccc--cccccCCCCcccEEEecCCccccCCCCchhhhcCCcceEEecCCCCC
Q 002863 508 RMSLMDNKIK--RLTVSPTSPRLLTLFLNSNYFKNDKVNYHFFKSMASLRVLKLSHSDL 564 (873)
Q Consensus 508 ~l~l~~~~~~--~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~Lr~L~L~~n~l 564 (873)
+++.+++.++ .+|.. -.++|+.|+|++|.|+.++ ...|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~--~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALP--PGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCC--TTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccC--hhhhhhccccCEEEecCCCe
Confidence 4555566665 55532 2346888899999888888 77888888888888888844
No 294
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.59 E-value=0.016 Score=61.41 Aligned_cols=114 Identities=17% Similarity=0.187 Sum_probs=61.4
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHH
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFN 242 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (873)
....+++|+|+.|+||||+++.+......... ..++. +.++.... .. .....................+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~--~~i~t--~ed~~e~~--~~---~~~~~v~q~~~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKY--HHILT--IEDPIEFV--HE---SKKCLVNQREVHRDTLGFSEALRS 191 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCC--CEEEE--EESSCCSC--CC---CSSSEEEEEEBTTTBSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCC--cEEEE--ccCcHHhh--hh---ccccceeeeeeccccCCHHHHHHH
Confidence 44469999999999999999988775411100 11222 22211000 00 000000000001111223446778
Q ss_pred HhccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhhh
Q 002863 243 ILSKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEVC 289 (873)
Q Consensus 243 ~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~ 289 (873)
.|...+=+|++|++.+...++.+.... ..|..|++||...+.+
T Consensus 192 aL~~~PdvillDEp~d~e~~~~~~~~~----~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 192 ALREDPDIILVGEMRDLETIRLALTAA----ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH----HTTCEEEEEESCSSHH
T ss_pred HhhhCcCEEecCCCCCHHHHHHHHHHH----hcCCEEEEEEccChHH
Confidence 888999999999998765554433221 2355688888876544
No 295
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.58 E-value=0.027 Score=55.34 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=33.3
Q ss_pred cchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 147 VGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 147 vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
-+.++..+++...+......+|+|+|.+|+|||||+..+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444555666665555678899999999999999999988775
No 296
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.56 E-value=0.021 Score=54.77 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=22.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999876
No 297
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.52 E-value=0.02 Score=55.38 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.3
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345699999999999999999998765
No 298
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.45 E-value=0.022 Score=53.62 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=22.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.44 E-value=0.025 Score=54.23 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998875
No 300
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.38 E-value=0.018 Score=55.78 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998875
No 301
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.37 E-value=0.03 Score=59.93 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=36.2
Q ss_pred cccchhHHHHHHHHHHh-------------c--CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQLTFDRVWRCLM-------------E--EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.++|.+..++.+...+. . .....|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 36899988888887772 1 134568899999999999999999876
No 302
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.37 E-value=0.021 Score=55.35 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 303
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.37 E-value=0.023 Score=57.25 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=22.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+|.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998876
No 304
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.34 E-value=0.026 Score=54.96 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=24.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.+||.|.|++|+||||.|+.+...+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999887
No 305
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.32 E-value=0.024 Score=54.02 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|.|.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998876
No 306
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.32 E-value=0.033 Score=59.88 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=35.2
Q ss_pred cccchhHHHHHHHHHHhc------------------------------CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQLTFDRVWRCLME------------------------------EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~------------------------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 478988888888776620 123468899999999999999999875
No 307
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.30 E-value=0.025 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
.+++|+|+.|+||||+++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999763
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.29 E-value=0.02 Score=54.19 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|.|+|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998876
No 309
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.29 E-value=0.023 Score=54.28 Aligned_cols=24 Identities=29% Similarity=0.363 Sum_probs=22.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998876
No 310
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.29 E-value=0.18 Score=52.03 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=33.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 219 (873)
.-.+++|+|++|+|||||++.++........ ..++|+.... ...++.+.+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G--~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMG--KKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSC--CCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC--CeEEEEeCcC--CHHHHHHHHHH
Confidence 4469999999999999999998877621111 1355665433 34444444443
No 311
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.28 E-value=0.024 Score=53.53 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 312
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.27 E-value=0.025 Score=55.06 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998875
No 313
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.26 E-value=0.027 Score=54.89 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 314
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.24 E-value=0.022 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQIN 186 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~ 186 (873)
...+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999644
No 315
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.24 E-value=0.018 Score=61.32 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=34.0
Q ss_pred CcccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.++|.+..++.+...+......-|.|+|++|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3589998866655444433333348899999999999999999865
No 316
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.15 E-value=0.025 Score=52.84 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|.|+.|+||||+|+.+....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 317
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.15 E-value=0.17 Score=59.21 Aligned_cols=170 Identities=16% Similarity=0.223 Sum_probs=78.4
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccH
Q 002863 144 PTVVGLQLTFDRVWRCLME-------------EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 210 (873)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||.+|+++++.. .. -++.++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~-----~f~~v~~---- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA-----NFISIKG---- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TC-----EEEECCH----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CC-----ceEEecc----
Confidence 4567888888777665431 123457799999999999999999986 22 2233331
Q ss_pred HHHHHHHHHHhCCCCccccccCHHHHHHHHHHHh-ccCCeEEEEecccccc--------c--------cccccccCCCCC
Q 002863 211 EKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNIL-SKKKFVLLLDDMWELV--------D--------LDQVGLPIPSRT 273 (873)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------~--------~~~~~~~l~~~~ 273 (873)
.+++ . .+...+ +..+..+.+.. +..+.+|++|+++... + ..++...+....
T Consensus 545 ~~l~----s-------~~vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 545 PELL----T-------MWFGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp HHHH----T-------TTCSSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred chhh----c-------cccchH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 1211 1 112223 33344444444 4578999999986421 0 011111111110
Q ss_pred -CCCcEEEEEccchhhh-----hccccccceeeccCChhhhHHHHHHHhcCCCCCCCCChHHHHHHHHHHhCCc
Q 002863 274 -SVSNKVVFTTREFEVC-----GQMEAHRSFKVECLRYDDAWKLFELKVGADTLDSHPDIPELAETLAKDCGGL 341 (873)
Q Consensus 274 -~~gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 341 (873)
..+.-||-||...+.. +...-.+.+.+..-+.++-.++|+.+........+.++ ..+++.+.|.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl----~~la~~t~g~ 682 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGF 682 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHhCCCC
Confidence 2232344455544321 11123456777777777777888766544332222233 4455666553
No 318
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.15 E-value=0.02 Score=54.61 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998765
No 319
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.14 E-value=0.028 Score=53.86 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 320
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.11 E-value=0.028 Score=54.00 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|.|++|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998876
No 321
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.11 E-value=0.19 Score=54.64 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=62.5
Q ss_pred HHHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-cHHHHHHHHHHHhCCC-------Cc
Q 002863 156 VWRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQEIIAKKIGLF-------NE 226 (873)
Q Consensus 156 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~ 226 (873)
.++.|.. ..-.-++|.|..|+|||+|++++.+.. .+.+-+.++++-+.+.. ...++.+++.+.-.+. ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~--a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI--AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT--TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHH--HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 3455543 345679999999999999999998875 13345778888888765 4667777776543222 10
Q ss_pred c----ccccCHH------HHHHHHHHHh---ccCCeEEEEeccc
Q 002863 227 S----WKNKSMQ------EKAQQIFNIL---SKKKFVLLLDDMW 257 (873)
Q Consensus 227 ~----~~~~~~~------~~~~~l~~~l---~~k~~LlVlDdv~ 257 (873)
. ..+.... ...-.+-+++ +++.+|+++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0 0111111 1122333555 3689999999984
No 322
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.10 E-value=0.027 Score=54.57 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHHh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINN 187 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~ 187 (873)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 323
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.09 E-value=0.022 Score=55.20 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998765
No 324
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.09 E-value=0.027 Score=54.52 Aligned_cols=23 Identities=26% Similarity=0.667 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999876
No 325
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.08 E-value=0.023 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|.|.|++|+||||+|+.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 326
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.06 E-value=0.028 Score=53.45 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999886
No 327
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.06 E-value=0.027 Score=55.62 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 328
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.06 E-value=0.045 Score=56.16 Aligned_cols=26 Identities=31% Similarity=0.236 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 329
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.05 E-value=0.029 Score=58.31 Aligned_cols=27 Identities=30% Similarity=0.676 Sum_probs=22.9
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
++.+||+|+|-|||||||.+..+.--.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH
Confidence 577999999999999999998776655
No 330
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.05 E-value=0.034 Score=53.75 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.8
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999998764
No 331
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.04 E-value=0.033 Score=54.11 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|+|++|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999987754
No 332
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.01 E-value=0.028 Score=54.54 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=22.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998765
No 333
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.99 E-value=0.034 Score=53.83 Aligned_cols=26 Identities=23% Similarity=0.407 Sum_probs=23.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 334
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.98 E-value=0.051 Score=56.37 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=29.8
Q ss_pred cchhHHHHHHHHHHhc----CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 147 VGLQLTFDRVWRCLME----EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 147 vgr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+|....+..+...+.. ....+|+|.|+.|+||||+|+.+..-.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444433332 245699999999999999999987765
No 335
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.97 E-value=0.022 Score=54.12 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998876
No 336
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.96 E-value=0.032 Score=53.06 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.2
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...|+|.|++|+||||+|+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 337
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.94 E-value=0.19 Score=51.67 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=48.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcc-cHHHHHHHHHHHhCCCCccc-cccCHHHHHHHHHH
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQEIIAKKIGLFNESW-KNKSMQEKAQQIFN 242 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 242 (873)
..+++|+|.+|+||||++..++... ... . ..+.++...-.. .....+....+..++..-.. ...++.++......
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~-~~~-~-~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY-KGK-G-RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH-HHT-T-CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHc-C-CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999998876 211 1 234445443221 11122334455555432110 12345455433333
Q ss_pred Hh-ccCCeEEEEecc
Q 002863 243 IL-SKKKFVLLLDDM 256 (873)
Q Consensus 243 ~l-~~k~~LlVlDdv 256 (873)
.+ ....=++|+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 33 344557888876
No 338
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.91 E-value=0.032 Score=54.20 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHHh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINN 187 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~ 187 (873)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 339
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.88 E-value=0.15 Score=52.44 Aligned_cols=89 Identities=17% Similarity=0.108 Sum_probs=50.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc-ccHHHHHHHHHHHhCCCCcc-ccccCHHHHHHHHHH
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQEIIAKKIGLFNES-WKNKSMQEKAQQIFN 242 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 242 (873)
..+++++|.+|+||||++..++..... . . ..+.++..... ....+.++...+..++..-. ....+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~-~-g-~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK-K-G-FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH-T-T-CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-C-C-CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 569999999999999999998877621 1 1 23555554322 22233344455555543211 022355555544555
Q ss_pred HhccCCe-EEEEecc
Q 002863 243 ILSKKKF-VLLLDDM 256 (873)
Q Consensus 243 ~l~~k~~-LlVlDdv 256 (873)
.++.+.| ++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 5542333 7788875
No 340
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.87 E-value=0.026 Score=53.52 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.|+|+|+.|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999998765
No 341
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.86 E-value=0.025 Score=54.53 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 342
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.84 E-value=0.062 Score=53.64 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.7
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
....+|+|.|++|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 343
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.82 E-value=0.034 Score=53.55 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998876
No 344
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.82 E-value=0.21 Score=54.63 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+++|+|..|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 345
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.81 E-value=0.037 Score=53.91 Aligned_cols=24 Identities=21% Similarity=0.464 Sum_probs=22.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+|+|.|++|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999877
No 346
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.81 E-value=0.034 Score=53.13 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998765
No 347
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.76 E-value=0.038 Score=52.88 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 348
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.71 E-value=0.038 Score=55.90 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998874
No 349
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.69 E-value=0.028 Score=52.70 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998875
No 350
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.69 E-value=0.039 Score=52.69 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=23.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|+|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998764
No 351
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.66 E-value=0.036 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|.|++|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998876
No 352
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.66 E-value=0.041 Score=50.63 Aligned_cols=27 Identities=37% Similarity=0.331 Sum_probs=23.5
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455699999999999999999998764
No 353
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.65 E-value=0.036 Score=57.97 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=35.4
Q ss_pred HHHHHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc
Q 002863 154 DRVWRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD 207 (873)
Q Consensus 154 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 207 (873)
-++++.+.. ..-.-++|+|.+|+|||+|++++.+........+.+ +++-+.+.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 355666654 345688999999999999999998865211233433 45666654
No 354
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.63 E-value=0.036 Score=55.58 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|+|+.|+|||||++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35699999999999999999999765
No 355
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.61 E-value=0.13 Score=65.70 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=56.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc---cccCHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW---KNKSMQEKAQQI 240 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (873)
..++|.|+|++|+|||+||.++.... . ..=..++|+.+...++... ++.++...+.. .....++..+.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea-~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA-Q--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH-H--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 45799999999999999999998876 2 2223578888877766555 45555332111 122334455555
Q ss_pred HHHhc-cCCeEEEEeccc
Q 002863 241 FNILS-KKKFVLLLDDMW 257 (873)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~ 257 (873)
+...+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 54443 567899999994
No 356
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.61 E-value=0.041 Score=57.09 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.9
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
....+|+|+|+.|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 356799999999999999999998865
No 357
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.61 E-value=0.42 Score=52.82 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=22.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|+|.+|+||||++..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999988766
No 358
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.60 E-value=0.038 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=21.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 359
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.59 E-value=0.037 Score=53.74 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34599999999999999999998865
No 360
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.57 E-value=0.039 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 361
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.57 E-value=0.044 Score=54.90 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.3
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
....+|+|.|+.|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999988754
No 362
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.56 E-value=0.047 Score=59.12 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=36.1
Q ss_pred CcccchhHHHHHHHHHHhc--------------CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLME--------------EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..++|.++.++.+..++.. ...+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578988888888766632 123568899999999999999999876
No 363
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.51 E-value=0.043 Score=55.21 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998864
No 364
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.44 E-value=0.052 Score=51.66 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=27.1
Q ss_pred HHHHHHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 153 FDRVWRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 153 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+..+..++.. .....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444445443 123478999999999999999998876
No 365
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.42 E-value=0.098 Score=49.75 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=25.6
Q ss_pred ccCCEEecCCCCCCc-----cchhhhcCCCCcEeeccccccccccCh----hhhCCCcccceEeccc
Q 002863 572 VSLQYLDLSNSIPDR-----LPLGLKYLVNLKCLNLEYTFRLSRISP----QVISNLKMLRVLRMFE 629 (873)
Q Consensus 572 ~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~l~~----~~i~~l~~L~~L~l~~ 629 (873)
..|+.|+|++|.+.. |-..+..-+.|++|+|++| .+..-.. .++..-+.|++|++++
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 445555555444432 2233444455555665555 4432111 1233344566666653
No 366
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.41 E-value=0.052 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=23.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998875
No 367
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.40 E-value=0.044 Score=53.33 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998875
No 368
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.40 E-value=0.029 Score=53.19 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=18.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998775
No 369
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.39 E-value=0.043 Score=53.70 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998776
No 370
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.37 E-value=0.044 Score=50.81 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..++++|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998875
No 371
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.30 E-value=0.035 Score=54.41 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34589999999999999999998764
No 372
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.29 E-value=0.065 Score=56.13 Aligned_cols=105 Identities=15% Similarity=0.099 Sum_probs=56.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHHhc
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESWKNKSMQEKAQQIFNILS 245 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (873)
.+++|+|+.|+|||||++.+..-. . .-...+.+.-......... -+.++. ... ..+.....+...+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~-~---~~~g~i~i~~~~e~~~~~~----~~~i~~----~~g-gg~~~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI-P---KEERIISIEDTEEIVFKHH----KNYTQL----FFG-GNITSADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS-C---TTSCEEEEESSCCCCCSSC----SSEEEE----ECB-TTBCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-c---CCCcEEEECCeeccccccc----hhEEEE----EeC-CChhHHHHHHHHhh
Confidence 489999999999999999998875 2 1234444432211110000 000000 000 11233445666778
Q ss_pred cCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchh
Q 002863 246 KKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFE 287 (873)
Q Consensus 246 ~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~ 287 (873)
.++=++++|++.+...++.+.. +.. .+..+|+||...+
T Consensus 239 ~~p~ilildE~~~~e~~~~l~~-~~~---g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYDFYNV-LCS---GHKGTLTTLHAGS 276 (330)
T ss_dssp SCCSEEEECCCCSTHHHHHHHH-HHT---TCCCEEEEEECSS
T ss_pred hCCCEEEEcCCChHHHHHHHHH-Hhc---CCCEEEEEEcccH
Confidence 8888999999976444443322 211 1223677776543
No 373
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.28 E-value=0.048 Score=53.23 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.7
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999875
No 374
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.25 E-value=0.044 Score=55.07 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999999765
No 375
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.23 E-value=0.23 Score=51.80 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=36.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKK 220 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 220 (873)
...++.|.|.+|+||||+|..++..... .=..++|++. ..+..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC--CCCHHHHHHHHHHH
Confidence 3458999999999999999998877622 1235666654 34566776666544
No 376
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.23 E-value=0.047 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998875
No 377
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.23 E-value=0.046 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.23 E-value=0.047 Score=53.94 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...|.|.|++|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998865
No 379
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.21 E-value=0.049 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+|.|.|++|+||+|.|+.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887
No 380
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.10 E-value=0.048 Score=53.38 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34699999999999999999998865
No 381
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.09 E-value=0.05 Score=53.40 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...|.|.|++|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999998876
No 382
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.99 E-value=0.054 Score=52.33 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.1
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998764
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.96 E-value=0.058 Score=50.88 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998865
No 384
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.93 E-value=0.054 Score=55.96 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=23.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35699999999999999999998776
No 385
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.92 E-value=0.03 Score=54.69 Aligned_cols=23 Identities=30% Similarity=0.743 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 386
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.88 E-value=0.051 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=22.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 387
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.88 E-value=0.047 Score=52.02 Aligned_cols=23 Identities=43% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999988765
No 388
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.79 E-value=0.11 Score=53.90 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.8
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
....+|+|+|+.|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998865
No 389
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.77 E-value=0.064 Score=52.21 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.7
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
....+|.|.|+.|+||||+|+.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 455789999999999999999998865
No 390
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.71 E-value=0.068 Score=52.33 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINN 187 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~ 187 (873)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 391
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.69 E-value=0.063 Score=52.80 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998876
No 392
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.61 E-value=0.056 Score=51.41 Aligned_cols=106 Identities=10% Similarity=0.034 Sum_probs=56.5
Q ss_pred CCCcccEEEecCC-ccccCC--CCchhhhcCCcceEEecCCCCCC--------ccccCcccCCEEecCCCCCCc-----c
Q 002863 524 TSPRLLTLFLNSN-YFKNDK--VNYHFFKSMASLRVLKLSHSDLP--------CEISNLVSLQYLDLSNSIPDR-----L 587 (873)
Q Consensus 524 ~~~~L~~L~l~~n-~l~~~~--~~~~~~~~l~~Lr~L~L~~n~lp--------~~i~~L~~L~~L~L~~~~i~~-----l 587 (873)
.-+.|+.|+|++| .+.... .....+..-+.|+.|+|++|.|- ..+..-+.|++|+|++|.|+. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666654 442211 01233455667777777777552 223344567777777776653 2
Q ss_pred chhhhcCCCCcEeeccccccccccC-------hhhhCCCcccceEecccc
Q 002863 588 PLGLKYLVNLKCLNLEYTFRLSRIS-------PQVISNLKMLRVLRMFEC 630 (873)
Q Consensus 588 p~~i~~l~~L~~L~L~~~~~l~~l~-------~~~i~~l~~L~~L~l~~~ 630 (873)
-+.+..-+.|++|+|++|. ...+. ..++..-+.|..|+++.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~-~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQR-QSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHTTTTCCCSEEECCCCS-SCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHhhCCceeEEECCCCc-CcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3344455667777777541 11111 122444567777777653
No 393
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.61 E-value=0.067 Score=55.62 Aligned_cols=24 Identities=25% Similarity=0.420 Sum_probs=22.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998876
No 394
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.60 E-value=0.04 Score=51.51 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=22.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+++|+|..|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998776
No 395
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.58 E-value=0.086 Score=51.04 Aligned_cols=23 Identities=35% Similarity=0.238 Sum_probs=20.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998764
No 396
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.55 E-value=0.073 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=21.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQIN 186 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~ 186 (873)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 397
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.51 E-value=0.069 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 398
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.50 E-value=0.073 Score=54.89 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998876
No 399
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.49 E-value=0.071 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 400
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.48 E-value=0.054 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999876
No 401
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.43 E-value=0.065 Score=53.71 Aligned_cols=24 Identities=38% Similarity=0.290 Sum_probs=21.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINN 187 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~ 187 (873)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346999999999999999998883
No 402
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.42 E-value=0.069 Score=51.71 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=21.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998875
No 403
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.42 E-value=0.063 Score=52.79 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=22.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998754
No 404
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.39 E-value=0.062 Score=53.27 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999998764
No 405
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.37 E-value=0.072 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 406
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.30 E-value=0.14 Score=54.37 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=28.7
Q ss_pred HHHHHHHHh--cCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 153 FDRVWRCLM--EEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 153 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..++.+.+. .....+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554 3567899999999999999999987765
No 407
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.30 E-value=0.071 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.. .+++|+|+.|+|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 799999999999999999998754
No 408
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.28 E-value=0.048 Score=53.98 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=16.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHH-hhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQIN-NRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 189 (873)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4589999999999999999998 653
No 409
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.27 E-value=0.22 Score=54.27 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=56.0
Q ss_pred HHHHHhc-CCcEEEEEEeCCCCcHHHHH-HHHHhhhccCCCCCce-EEEEEeCCcc-cHHHHHHHHHHHhCCCCcc----
Q 002863 156 VWRCLME-EHVGIVGLYGMGGVGKTTLL-TQINNRFFDTPNHFDF-VIWVVVSRDL-QLEKIQEIIAKKIGLFNES---- 227 (873)
Q Consensus 156 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~---- 227 (873)
.++.+.. ..-.-++|.|..|+|||+|| ..+.+.. .-+. .+++-+.+.. ...++.+.+.+.-.+....
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 4455543 34457899999999999996 5676654 2453 4667777654 4566777766532221110
Q ss_pred ccccCHHHH------HHHHHHHh--ccCCeEEEEeccc
Q 002863 228 WKNKSMQEK------AQQIFNIL--SKKKFVLLLDDMW 257 (873)
Q Consensus 228 ~~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 257 (873)
..+...... .-.+-+++ +|+.+|+++||+-
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 011111111 11233444 5799999999984
No 410
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.24 E-value=0.087 Score=53.84 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.4
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..+|+|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998765
No 411
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.23 E-value=0.094 Score=60.18 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=36.6
Q ss_pred cccchhHHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 145 TVVGLQLTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 145 ~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 4799988888887777655 488999999999999999999875
No 412
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.19 E-value=0.08 Score=54.70 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=22.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999875
No 413
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.18 E-value=0.079 Score=49.56 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.++++|+|+.|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999988765
No 414
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.11 E-value=0.087 Score=54.60 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|.|+|+.|+||||||..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998875
No 415
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.00 E-value=0.087 Score=54.76 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=29.1
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 206 (873)
...++|+|+|-||+||||+|..++....+ . .. .++-|....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~-~-G~-~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-L-GK-RVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-T-TC-CEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH-C-CC-eEEEEeCCC
Confidence 46789999999999999999988876622 1 22 355565543
No 416
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.00 E-value=0.074 Score=52.78 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999998764
No 417
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.97 E-value=0.085 Score=52.28 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.5
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...|.|.|++|+||||+|+.+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 418
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.93 E-value=0.49 Score=52.88 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=36.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKK 220 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 220 (873)
...++.|.|.+|+||||+|..++... ... +=..++|++... +..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~-a~~-~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW-GTA-MGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH-TTT-SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH-HHh-cCCcEEEEeccC--CHHHHHHHHHHH
Confidence 34588999999999999999988776 221 122567776544 456776666543
No 419
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.92 E-value=0.074 Score=53.96 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34589999999999999999987653
No 420
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.84 E-value=0.077 Score=53.53 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998754
No 421
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.81 E-value=0.18 Score=49.69 Aligned_cols=26 Identities=27% Similarity=0.522 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|.|+.|+||||+++.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999999987
No 422
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.71 E-value=0.098 Score=49.90 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.0
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 423
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.71 E-value=0.07 Score=51.88 Aligned_cols=26 Identities=38% Similarity=0.606 Sum_probs=22.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998754
No 424
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.70 E-value=0.18 Score=54.21 Aligned_cols=93 Identities=12% Similarity=0.158 Sum_probs=53.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCC--------CCCc-eEEEEEeCCcc-cHHHHHHHHHHHhCCCC-----ccc
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTP--------NHFD-FVIWVVVSRDL-QLEKIQEIIAKKIGLFN-----ESW 228 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~ 228 (873)
.-.-++|.|..|+|||+|+.++.+.. ... ++-+ .++++-+.+.. ...++.+++.+.=.+.. ...
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~ 224 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKA 224 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEET
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECC
Confidence 34567899999999999999998876 321 1222 55566666543 45566666554211110 111
Q ss_pred cccCHHHH-----HHHHHHHh---ccCCeEEEEeccc
Q 002863 229 KNKSMQEK-----AQQIFNIL---SKKKFVLLLDDMW 257 (873)
Q Consensus 229 ~~~~~~~~-----~~~l~~~l---~~k~~LlVlDdv~ 257 (873)
+....... .-.+.+++ +++.+|+++||+-
T Consensus 225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11112211 12233444 3789999999984
No 425
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.69 E-value=0.091 Score=52.60 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
.-.+++|+|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999884
No 426
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.69 E-value=0.083 Score=52.54 Aligned_cols=26 Identities=42% Similarity=0.510 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998764
No 427
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.67 E-value=0.4 Score=51.52 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=53.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCC-CCCc-eEEEEEeCCc-ccHHHHHHHHHHHhCCCCcc----ccccCHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTP-NHFD-FVIWVVVSRD-LQLEKIQEIIAKKIGLFNES----WKNKSMQEK 236 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~-~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~ 236 (873)
.-.-++|.|..|+|||+|+.++.+.. ... ++-+ .++++-+.+. ....++.+++.+.=.+.... ..+......
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~-~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQA-TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHC-BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHH-HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 33457899999999999999998876 321 1112 5566666654 34566667665432111100 011122111
Q ss_pred ------HHHHHHHh---ccCCeEEEEeccc
Q 002863 237 ------AQQIFNIL---SKKKFVLLLDDMW 257 (873)
Q Consensus 237 ------~~~l~~~l---~~k~~LlVlDdv~ 257 (873)
.-.+.+++ +|+.+|+++||+-
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 12233444 3789999999984
No 428
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.66 E-value=0.1 Score=54.98 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.3
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35699999999999999999998876
No 429
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.65 E-value=0.084 Score=53.13 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998764
No 430
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.64 E-value=0.083 Score=53.39 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999998764
No 431
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.61 E-value=0.084 Score=53.17 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45699999999999999999988754
No 432
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.58 E-value=0.087 Score=51.96 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998765
No 433
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.58 E-value=0.11 Score=52.44 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=56.4
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCC-cccHHHHHHHHH--HHhCCCCccccccCHHHHHHH
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-DLQLEKIQEIIA--KKIGLFNESWKNKSMQEKAQQ 239 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~--~~l~~~~~~~~~~~~~~~~~~ 239 (873)
....+++|+|+.|+|||||++.+...... .+...+++.-.. .+-.... ..+. ..++. .. ......
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~---~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl-----~~---~~l~~~ 90 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ---TKSYHIITIEDPIEYVFKHK-KSIVNQREVGE-----DT---KSFADA 90 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH---HCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT-----TB---SCHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC---CCCCEEEEcCCcceeecCCc-ceeeeHHHhCC-----CH---HHHHHH
Confidence 45579999999999999999998875411 112222221110 0000000 0000 00111 01 122445
Q ss_pred HHHHhccCCeEEEEeccccccccccccccCCCCCCCCcEEEEEccchhh
Q 002863 240 IFNILSKKKFVLLLDDMWELVDLDQVGLPIPSRTSVSNKVVFTTREFEV 288 (873)
Q Consensus 240 l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v 288 (873)
+...+..++=++++|+..+......+.... ..|.-|++||.+.++
T Consensus 91 la~aL~~~p~illlDEp~D~~~~~~~l~~~----~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 91 LRAALREDPDVIFVGEMRDLETVETALRAA----ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHHHCCSEEEESCCCSHHHHHHHHHHH----HTTCEEEEEECCSSH
T ss_pred HHHHHhhCCCEEEeCCCCCHHHHHHHHHHH----ccCCEEEEEeCcchH
Confidence 666666678889999986443322221111 235568888877654
No 434
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.57 E-value=0.093 Score=52.31 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=22.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999987653
No 435
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.52 E-value=0.11 Score=53.08 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=23.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999998875
No 436
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.51 E-value=0.097 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
.-.+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4469999999999999999999885
No 437
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.49 E-value=0.09 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=22.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998764
No 438
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.47 E-value=0.089 Score=52.77 Aligned_cols=26 Identities=42% Similarity=0.529 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999988754
No 439
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.43 E-value=0.49 Score=51.87 Aligned_cols=53 Identities=9% Similarity=-0.097 Sum_probs=36.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKK 220 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 220 (873)
...++.|.|.+|+||||+|..++..... .. =..++|++.. .+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~-~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL-KE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH-TT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 3458999999999999999998877521 11 1246776654 3456666666543
No 440
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.39 E-value=0.64 Score=50.60 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=56.5
Q ss_pred HHHHHhc-CCcEEEEEEeCCCCcHHHHH-HHHHhhhccCCCCCc-eEEEEEeCCcc-cHHHHHHHHHHHhCCCCccc---
Q 002863 156 VWRCLME-EHVGIVGLYGMGGVGKTTLL-TQINNRFFDTPNHFD-FVIWVVVSRDL-QLEKIQEIIAKKIGLFNESW--- 228 (873)
Q Consensus 156 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~--- 228 (873)
.++.+.. ..-.-++|.|..|+|||+|| ..+.+.. .-+ ..+++-+.+.. ...++.+.+.+.-.+.....
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 3455443 34457899999999999996 5777764 234 34667777654 45667777765433221100
Q ss_pred -cccCHHHH------HHHHHHHh--ccCCeEEEEeccc
Q 002863 229 -KNKSMQEK------AQQIFNIL--SKKKFVLLLDDMW 257 (873)
Q Consensus 229 -~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 257 (873)
.+...... .-.+-+++ +|+.+|+++||+-
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 11111111 11233444 5899999999984
No 441
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.38 E-value=0.38 Score=61.55 Aligned_cols=87 Identities=20% Similarity=0.163 Sum_probs=58.5
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc---cccCHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW---KNKSMQEKAQQI 240 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (873)
..+++.|+|++|+||||||.+++.... .. =..++|++....++.. .++.++...+.. +..+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a-~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ-RE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-TT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-hc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 456999999999999999999988762 22 2357888877766643 256666543211 234556666655
Q ss_pred HHHh-ccCCeEEEEecccc
Q 002863 241 FNIL-SKKKFVLLLDDMWE 258 (873)
Q Consensus 241 ~~~l-~~k~~LlVlDdv~~ 258 (873)
.... +.+.-+||+|-+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 5544 35667999999854
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.34 E-value=0.11 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=21.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 443
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.31 E-value=0.11 Score=53.50 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=23.3
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345699999999999999999988764
No 444
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.24 E-value=0.097 Score=53.06 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999988754
No 445
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.24 E-value=0.098 Score=52.69 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44599999999999999999998754
No 446
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.24 E-value=0.098 Score=52.22 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999998765
No 447
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.10 E-value=0.36 Score=60.95 Aligned_cols=83 Identities=20% Similarity=0.213 Sum_probs=0.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCccc---cccCHHHHHHHHHH
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNESW---KNKSMQEKAQQIFN 242 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~ 242 (873)
+++.|+|.+|+||||||.+++... ...=..++|++....++... ++.++...+.. ...+.++....+..
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~---~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH---HHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHH
Q ss_pred Hh-ccCCeEEEEecc
Q 002863 243 IL-SKKKFVLLLDDM 256 (873)
Q Consensus 243 ~l-~~k~~LlVlDdv 256 (873)
.. +.+.-+||+|-+
T Consensus 456 lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHTCCSEEEESCS
T ss_pred HHHhcCCCEEEECCH
No 448
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.09 E-value=0.1 Score=52.31 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998764
No 449
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.07 E-value=0.13 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 450
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.07 E-value=0.1 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44589999999999999999988754
No 451
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.06 E-value=0.12 Score=48.94 Aligned_cols=25 Identities=28% Similarity=0.157 Sum_probs=21.9
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...|.|.|+.|+||||||.++....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578899999999999999998764
No 452
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.05 E-value=0.11 Score=49.88 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=21.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.|+|+|..|+|||||++.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998763
No 453
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.02 E-value=0.1 Score=53.03 Aligned_cols=26 Identities=42% Similarity=0.494 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44589999999999999999998765
No 454
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.01 E-value=0.13 Score=51.90 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35788999999999999999998766
No 455
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.00 E-value=0.061 Score=55.22 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=19.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+..+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 456
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.99 E-value=0.21 Score=53.97 Aligned_cols=100 Identities=12% Similarity=0.100 Sum_probs=57.6
Q ss_pred HHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCC--CceEEEEEeCCcc-cHHHHHHHHHHHhCCCCcc----c
Q 002863 157 WRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FDFVIWVVVSRDL-QLEKIQEIIAKKIGLFNES----W 228 (873)
Q Consensus 157 ~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~ 228 (873)
++.|.. ..-.-++|.|.+|+|||+|+.+++++. ...+. =+.++++-+.+.. ...++.+++.+.-.+.... .
T Consensus 143 ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 143 IDGTNTLVRGQKLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeccccCCEEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 444432 234567889999999999999999886 32111 1356666666543 4566777776542221110 0
Q ss_pred cccCHHHH------HHHHHHHh---ccCCeEEEEeccc
Q 002863 229 KNKSMQEK------AQQIFNIL---SKKKFVLLLDDMW 257 (873)
Q Consensus 229 ~~~~~~~~------~~~l~~~l---~~k~~LlVlDdv~ 257 (873)
.+...... .-.+-+++ +|+.+|+++||+-
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 11111111 12233444 4799999999973
No 457
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.98 E-value=0.18 Score=54.31 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
...+++|+|+.|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 5679999999999999999999884
No 458
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.96 E-value=0.46 Score=52.22 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=34.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIA 218 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 218 (873)
...++.|.|.+|+||||||..++..... . .=..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~-~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT-K-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH-H-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-h-CCCcEEEEECCC--CHHHHHHHHH
Confidence 3458999999999999999998877521 1 112467776543 4456655554
No 459
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.93 E-value=0.14 Score=53.30 Aligned_cols=26 Identities=38% Similarity=0.636 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|+|.+|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999988776
No 460
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.92 E-value=0.14 Score=46.87 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-|+|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999988753
No 461
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.86 E-value=0.39 Score=45.93 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|+|=|.-|+||||.++.+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47788999999999999999887
No 462
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.83 E-value=0.26 Score=48.62 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=27.8
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEE
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV 203 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 203 (873)
...|+|.|+.|+||||+++.+.... . ...+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l-~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL-Q-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH-H-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-H-hcCCCeeeeec
Confidence 4589999999999999999999877 2 23455344443
No 463
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.82 E-value=1.1 Score=48.75 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=55.8
Q ss_pred HHHHHhc-CCcEEEEEEeCCCCcHHHHH-HHHHhhhccCCCCCc-eEEEEEeCCcc-cHHHHHHHHHHHhCCCCccc---
Q 002863 156 VWRCLME-EHVGIVGLYGMGGVGKTTLL-TQINNRFFDTPNHFD-FVIWVVVSRDL-QLEKIQEIIAKKIGLFNESW--- 228 (873)
Q Consensus 156 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~--- 228 (873)
.++.+.. ..-.-++|.|..|+|||+|| ..+.+.. +-+ .++++-+.+.. ...++.+.+.+.-.+.....
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~-----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~a 226 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR-----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVA 226 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS-----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEE
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc-----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEE
Confidence 3455543 34457889999999999996 5666643 223 35677787754 45667777655422221100
Q ss_pred -cccCHHHH------HHHHHHHh--ccCCeEEEEeccc
Q 002863 229 -KNKSMQEK------AQQIFNIL--SKKKFVLLLDDMW 257 (873)
Q Consensus 229 -~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 257 (873)
.+...... .-.+-+++ +|+.+|+++||+-
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 227 TASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 11111111 11222333 5899999999984
No 464
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.80 E-value=0.13 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998765
No 465
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.80 E-value=0.1 Score=49.37 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998774
No 466
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.76 E-value=0.12 Score=56.08 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=23.6
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998765
No 467
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.75 E-value=0.21 Score=54.39 Aligned_cols=89 Identities=10% Similarity=0.136 Sum_probs=50.3
Q ss_pred CcEEEEEEeCCCCcHHHHH-HHHHhhhccCCCCCc-eEEEEEeCCcc-cHHHHHHHHHHHhCCCCc-----cccc---c-
Q 002863 164 HVGIVGLYGMGGVGKTTLL-TQINNRFFDTPNHFD-FVIWVVVSRDL-QLEKIQEIIAKKIGLFNE-----SWKN---K- 231 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~---~- 231 (873)
.-.-++|.|.+|+|||+|| ..+.+.. .-+ ..+++-+.+.. ...++.+.+.+.-.+... ..+. .
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 3457889999999999996 5776654 234 34667777654 455566655442211110 0000 0
Q ss_pred -CHHHHHHHHHHHh--ccCCeEEEEeccc
Q 002863 232 -SMQEKAQQIFNIL--SKKKFVLLLDDMW 257 (873)
Q Consensus 232 -~~~~~~~~l~~~l--~~k~~LlVlDdv~ 257 (873)
-.....-.+-+++ +|+.+|+++||+-
T Consensus 237 ~~a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 0111122222333 5899999999974
No 468
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.67 E-value=0.11 Score=51.22 Aligned_cols=25 Identities=32% Similarity=0.263 Sum_probs=22.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4569999999999999999988765
No 469
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.65 E-value=0.4 Score=52.28 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=57.4
Q ss_pred HHHHHhc-CCcEEEEEEeCCCCcHHHHH-HHHHhhhccC----CCCCc-eEEEEEeCCcc-cHHHHHHHHHHHhCCCCcc
Q 002863 156 VWRCLME-EHVGIVGLYGMGGVGKTTLL-TQINNRFFDT----PNHFD-FVIWVVVSRDL-QLEKIQEIIAKKIGLFNES 227 (873)
Q Consensus 156 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~----~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~ 227 (873)
.++.+.. ..-.-++|.|..|+|||+|| ..+.+.. .. ..+-+ ..+++-+.+.. ...++.+.+.+.-.+....
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~-~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK-RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH-HHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHH-hhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 4455543 34457899999999999995 5676665 21 12334 46677777654 4566777766532221110
Q ss_pred ----ccccCHHHH------HHHHHHHh--ccCCeEEEEeccc
Q 002863 228 ----WKNKSMQEK------AQQIFNIL--SKKKFVLLLDDMW 257 (873)
Q Consensus 228 ----~~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 257 (873)
..+...... .-.+-+++ +|+.+|+++||+-
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 011111111 11233344 5799999999984
No 470
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.63 E-value=0.14 Score=54.48 Aligned_cols=27 Identities=22% Similarity=0.053 Sum_probs=23.7
Q ss_pred CCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 163 EHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 163 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
....+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 355699999999999999999999765
No 471
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.56 E-value=0.25 Score=53.36 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=24.9
Q ss_pred hcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 161 MEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 161 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
......+++|+|+.|+||||+++.+....
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34556799999999999999999998876
No 472
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.49 E-value=0.14 Score=46.94 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
-|+++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999987653
No 473
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.48 E-value=0.15 Score=50.48 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.1
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998865
No 474
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.44 E-value=0.14 Score=52.24 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.4
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.++.|+|++|+||||||..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999988654
No 475
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.43 E-value=0.21 Score=55.16 Aligned_cols=43 Identities=9% Similarity=-0.062 Sum_probs=31.7
Q ss_pred cchhHHHHHHHHHH--hcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 147 VGLQLTFDRVWRCL--MEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 147 vgr~~~~~~l~~~L--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.|.+..+.+.+.. ......+|.+.|+.|+||||+|+.+....
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 45544455555544 12355789999999999999999999987
No 476
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.39 E-value=0.17 Score=50.28 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
...|+|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999876
No 477
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.33 E-value=0.16 Score=53.89 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=22.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999998876
No 478
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.28 E-value=0.13 Score=51.68 Aligned_cols=24 Identities=42% Similarity=0.434 Sum_probs=21.3
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhh
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
-.+++|+|+.|+|||||++.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998764
No 479
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.25 E-value=0.42 Score=46.34 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=25.6
Q ss_pred cEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCce
Q 002863 165 VGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDF 198 (873)
Q Consensus 165 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 198 (873)
...|+|.|+.|+||||+++.+.... . ...++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l-~-~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL-R-ERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH-H-TTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCCc
Confidence 3588999999999999999999887 3 234554
No 480
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.23 E-value=0.089 Score=59.96 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=31.1
Q ss_pred CcccchhHHHHHHHHHHhcCCcE-----------EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 144 PTVVGLQLTFDRVWRCLMEEHVG-----------IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 144 ~~~vgr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.++|.+..++.+.-.+..+..+ -|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 34567766555554444333211 47899999999999999988764
No 481
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.19 E-value=0.3 Score=46.17 Aligned_cols=34 Identities=35% Similarity=0.612 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhh
Q 002863 154 DRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 154 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
..+.+ +......-|+|+|.+|+|||||+..+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 44555 34455667889999999999999998854
No 482
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.17 E-value=1.2 Score=43.74 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHH-hhhccCCCCCceEEEEEeCCcccHHHHHHHHHHHhCCCCc-----
Q 002863 153 FDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQIN-NRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAKKIGLFNE----- 226 (873)
Q Consensus 153 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~-~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----- 226 (873)
.++++..+.++ ..+.|.|+.|+||||++.... +........-...+.+..........+.+.+...++....
T Consensus 66 q~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~ 143 (235)
T 3llm_A 66 ESEILEAISQN--SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGY 143 (235)
T ss_dssp HHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEE
T ss_pred HHHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEE
Confidence 45555555544 478999999999998765443 3221111111233433344333444555666555442210
Q ss_pred -------------cccccCHHHHHHHHHHHhccCCeEEEEecccc
Q 002863 227 -------------SWKNKSMQEKAQQIFNILSKKKFVLLLDDMWE 258 (873)
Q Consensus 227 -------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 258 (873)
...-.+.+.+.+.+...+. +--+||+|+++.
T Consensus 144 ~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~-~~~~lVlDEah~ 187 (235)
T 3llm_A 144 SVRFESILPRPHASIMFCTVGVLLRKLEAGIR-GISHVIVDEIHE 187 (235)
T ss_dssp EETTEEECCCSSSEEEEEEHHHHHHHHHHCCT-TCCEEEECCTTS
T ss_pred eechhhccCCCCCeEEEECHHHHHHHHHhhhc-CCcEEEEECCcc
Confidence 0011244555555544333 334789999976
No 483
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.17 E-value=0.18 Score=47.60 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNR 188 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~ 188 (873)
..|+|+|.+|+|||||+..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 484
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.16 E-value=0.34 Score=46.94 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=32.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHH
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 219 (873)
..|+|-|+.|+||||+++.+.+.. . ...+..+.+..-.....+.+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l-~-~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL-E-QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH-H-HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-H-HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 478999999999999999999877 3 233433333332222234444555543
No 485
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.16 E-value=0.64 Score=50.72 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=34.0
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCcccHHHHHHHHHH
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQEIIAK 219 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 219 (873)
...++.|.|.+|+||||+|..++.+... . . ..++|++.. .+..++...++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~-~-g-~~vl~fSlE--ms~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD-N-D-DVVNLHSLE--MGKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH-T-T-CEEEEECSS--SCTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH-c-C-CEEEEEECC--CCHHHHHHHHHH
Confidence 3458999999999999999998877622 2 1 246666544 344455555544
No 486
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.15 E-value=0.15 Score=53.50 Aligned_cols=26 Identities=35% Similarity=0.340 Sum_probs=22.9
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44689999999999999999998864
No 487
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.15 E-value=0.58 Score=51.34 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=41.2
Q ss_pred HHHHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCccc-HHHHHHHH
Q 002863 155 RVWRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ-LEKIQEII 217 (873)
Q Consensus 155 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i 217 (873)
++++.|.. ..-..++|.|..|+|||+|++++.+.. +-+.++++-+.+... ..++.+++
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 34555543 345689999999999999999998764 225778888887653 55566654
No 488
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.06 E-value=0.16 Score=46.90 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=20.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
--|+|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999988754
No 489
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.04 E-value=0.16 Score=49.56 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..++|.|++|+||||+|+.+....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 490
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.98 E-value=0.15 Score=52.10 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45699999999999999999998764
No 491
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.96 E-value=0.99 Score=49.76 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=40.6
Q ss_pred HHHHHHhc-CCcEEEEEEeCCCCcHHHHHHHHHhhhccCCCCCceEEEEEeCCc-ccHHHHHHHH
Q 002863 155 RVWRCLME-EHVGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQEII 217 (873)
Q Consensus 155 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i 217 (873)
++++.|.. ..-.-++|.|..|+|||+|+.++.+.. +-+.++++-+.+. ....++.+++
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 34555543 345689999999999999999998864 2256777777765 3445555554
No 492
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.90 E-value=0.2 Score=48.59 Aligned_cols=23 Identities=35% Similarity=0.213 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhh
Q 002863 167 IVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 167 vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.|.+.|.||+||||+|..+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47789999999999998888776
No 493
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.88 E-value=0.18 Score=47.55 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+.+|+|+.|+|||||+.+++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999987653
No 494
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.87 E-value=0.2 Score=48.32 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 153 FDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 153 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.+.+.+.....+.--|+|+|.+|+|||||+..+.+..
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3333333333445578899999999999998887654
No 495
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.83 E-value=0.11 Score=53.38 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45699999999999999999987754
No 496
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.75 E-value=0.18 Score=47.13 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998753
No 497
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.68 E-value=0.17 Score=47.92 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=20.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
--|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368899999999999999998654
No 498
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.67 E-value=0.17 Score=53.20 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=22.6
Q ss_pred CcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 164 HVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 164 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45699999999999999999988754
No 499
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=89.60 E-value=0.35 Score=53.37 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 151 LTFDRVWRCLMEEHVGIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 151 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
+.++.+..++.+++ +.+.|.|.+|+||||++..+....
T Consensus 32 ~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 32 NAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 33444444554433 488999999999999999988776
No 500
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.59 E-value=0.2 Score=47.37 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=20.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHHhhh
Q 002863 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (873)
Q Consensus 166 ~vi~I~G~gGiGKTtLa~~v~~~~ 189 (873)
.++.|+|+.|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999997666654
Done!