BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002864
(872 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 449 bits (1154), Expect = e-126, Method: Compositional matrix adjust.
Identities = 291/901 (32%), Positives = 458/901 (50%), Gaps = 79/901 (8%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNK 68
RLP +P YD+ + P+LTS F S I+V V T+FI+L++ DL I N ++ ++
Sbjct: 68 RLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQ--SE 125
Query: 69 VSSKALEP---TKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKGFYRSSYE 124
S+ ++P KV A E + L E L P +A+ F+ L D +GFY+S+Y
Sbjct: 126 EDSRYMKPGKELKVLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYR 185
Query: 125 -LNGEKKNMAVTQFEPADARRCFPCWDEPACKITLDVP----SELVALSNMPVIDE-KVD 178
L GE + +AVT FEP AR FPC+DEP K + S +ALSNMP + +++
Sbjct: 186 TLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELE 245
Query: 179 GNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVK 238
G + ++ + MSTYLVA ++ F + TS G+KV +Y K NQ +AL ++K
Sbjct: 246 GGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLK 305
Query: 239 TLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVA 298
L+ Y++YF + Y L KLD+IAIPDFA GAMEN+GL+TYRET+LL+D + S+A++K V
Sbjct: 306 LLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVT 365
Query: 299 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGL 358
V+AHELAHQWFGNLVTMEWW +WLNEGFA ++ +A ++ +PE + FL+ C E +
Sbjct: 366 RVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFEVI 425
Query: 359 RLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKY 418
D L S PI +I E+FD +SY KGA ++ ML+++LG E FQ+ + Y+KK+
Sbjct: 426 TKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKF 485
Query: 419 ACSNAKTEDLWAALEE---------------------------GSGEPVNKLMNSWTKQK 451
+ NAK +DLW++L G V ++M +WT QK
Sbjct: 486 SYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQK 545
Query: 452 GYPVIXXXXXXXXXXXXXXXXXXXGSPGDGQ---------WIVPITLCCGSYDVCKNFLL 502
G P++ D + W +P+T S +V +L
Sbjct: 546 GIPLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHIL 605
Query: 503 YNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--L 560
+K+D+ D+ E W+K NV+ G+Y V Y+ +L + L
Sbjct: 606 KSKTDTLDLPE-----------KTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLL 654
Query: 561 SETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADAR 620
DR G++ D F L A + TL L + ET L L +SY R
Sbjct: 655 RPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPAL--LEGLSYLESFYHMMDR 712
Query: 621 PELLDY---LKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEA 677
+ D LK++ + F+ ++ W K S D +LR + L H + +A
Sbjct: 713 RNISDISENLKRYLLQYFKPVIDRQSWSDKG--SVWDRMLRSALLKLACDLNHAPCIQKA 770
Query: 678 SKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRIL 737
++ F ++ +P D+ K Y V A +G+ LL Y + S E+ +IL
Sbjct: 771 AELFSQWMESSGKLNIPTDVLKIVY-----SVGAQTTAGWNYLLEQYELSMSSAEQNKIL 825
Query: 738 SSLASCPDVNIVLEVLNFLLSSEV-RSQD---AVYGLAVSIEGRETAWKWLKDNWDHISK 793
+L++ +L+++ + +V ++Q+ ++ +A +G++ AW ++++NW H+ K
Sbjct: 826 YALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLK 885
Query: 794 TWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKWV 851
+ G + I IS + F+S +K++EV+ FF S + + +E + N KW+
Sbjct: 886 KFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWL 945
Query: 852 E 852
E
Sbjct: 946 E 946
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 290/901 (32%), Positives = 457/901 (50%), Gaps = 79/901 (8%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNK 68
RLP +P YD+ + P+LTS F S I+V V T+FI+L++ DL I N ++ ++
Sbjct: 68 RLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQ--SE 125
Query: 69 VSSKALEP---TKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKGFYRSSYE 124
S+ ++P KV A E + L E L P +A+ F+ L D +GFY+S+Y
Sbjct: 126 EDSRYMKPGKELKVLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYR 185
Query: 125 -LNGEKKNMAVTQFEPADARRCFPCWDEPACKITLDVP----SELVALSNMPVIDE-KVD 178
L GE + +AVT FEP AR FPC+DEP K + S +ALSNMP + +++
Sbjct: 186 TLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELE 245
Query: 179 GNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVK 238
G + ++ + MSTYLVA ++ F + TS G+KV +Y K NQ +AL ++K
Sbjct: 246 GGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLK 305
Query: 239 TLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVA 298
L+ Y++YF + Y L KLD+IAIPDFA GAMEN+GL+TYRET+LL+D + S+A++K V
Sbjct: 306 LLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVT 365
Query: 299 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGL 358
V+AHELAHQWFGNLVTMEWW +WL EGFA ++ +A ++ +PE + FL+ C E +
Sbjct: 366 RVIAHELAHQWFGNLVTMEWWNDIWLKEGFAKYMELIAVNATYPELQFDDYFLNVCFEVI 425
Query: 359 RLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKY 418
D L S PI +I E+FD +SY KGA ++ ML+++LG E FQ+ + Y+KK+
Sbjct: 426 TKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKF 485
Query: 419 ACSNAKTEDLWAALEE---------------------------GSGEPVNKLMNSWTKQK 451
+ NAK +DLW++L G V ++M +WT QK
Sbjct: 486 SYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQK 545
Query: 452 GYPVIXXXXXXXXXXXXXXXXXXXGSPGDGQ---------WIVPITLCCGSYDVCKNFLL 502
G P++ D + W +P+T S +V +L
Sbjct: 546 GIPLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHIL 605
Query: 503 YNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--L 560
+K+D+ D+ E W+K NV+ G+Y V Y+ +L + L
Sbjct: 606 KSKTDTLDLPE-----------KTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLL 654
Query: 561 SETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADAR 620
DR G++ D F L A + TL L + ET L L +SY R
Sbjct: 655 RPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPAL--LEGLSYLESFYHMMDR 712
Query: 621 PELLDY---LKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEA 677
+ D LK++ + F+ ++ W K S D +LR + L H + +A
Sbjct: 713 RNISDISENLKRYLLQYFKPVIDRQSWSDKG--SVWDRMLRSALLKLACDLNHAPCIQKA 770
Query: 678 SKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRIL 737
++ F ++ +P D+ K Y V A +G+ LL Y + S E+ +IL
Sbjct: 771 AELFSQWMESSGKLNIPTDVLKIVY-----SVGAQTTAGWNYLLEQYELSMSSAEQNKIL 825
Query: 738 SSLASCPDVNIVLEVLNFLLSSEV-RSQD---AVYGLAVSIEGRETAWKWLKDNWDHISK 793
+L++ +L+++ + +V ++Q+ ++ +A +G++ AW ++++NW H+ K
Sbjct: 826 YALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLK 885
Query: 794 TWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKWV 851
+ G + I IS + F+S +K++EV+ FF S + + +E + N KW+
Sbjct: 886 KFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWL 945
Query: 852 E 852
E
Sbjct: 946 E 946
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 417 bits (1072), Expect = e-116, Method: Compositional matrix adjust.
Identities = 283/902 (31%), Positives = 449/902 (49%), Gaps = 89/902 (9%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNK 68
RLP++ +P YD+ + +LT+ F G+ +++ T I+L++ L I+ ++ K
Sbjct: 8 RLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATL---RK 64
Query: 69 VSSKAL--EPTKVELVEADEILVLEFAETLPTGMG-VLAIGFEGVLNDKMKGFYRSSYEL 125
+ + L EP +V E + L E L G+ + I + G L++ GFY+S+Y
Sbjct: 65 GAGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRT 124
Query: 126 N-GEKKNMAVTQFEPADARRCFPCWDEPACKITLDV-----PSELVALSNMPVIDE-KVD 178
GE + +A TQFEP AR FPC+DEPA K + + P L A+SNMP++ V
Sbjct: 125 KEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHL-AISNMPLVKSVTVA 183
Query: 179 GNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVK 238
+ + + MSTYLVA +I F+ V T G+KV VY K NQ +AL+ AV
Sbjct: 184 EGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVT 243
Query: 239 TLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVA 298
LE Y++YF++PY LPK D+ AIPDF +GAMEN+GL TYRE+ALL+D + S+A++K +
Sbjct: 244 LLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGIT 303
Query: 299 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGL 358
VAHELAHQWFGNLVTMEWW LWLNEGFA ++ +++ PE K+ F +C + +
Sbjct: 304 MTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAM 363
Query: 359 RLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKY 418
+D L SHP+ V + +I E+FD +SY KGA ++ ML+ YL A+ F+ + Y++K+
Sbjct: 364 EVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKH 423
Query: 419 ACSNAKTEDLWAALEE---------------------------GSGEPVNKLMNSWTKQK 451
+ N K EDLW ++ G V +MN+WT QK
Sbjct: 424 SYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQK 483
Query: 452 GYPVIXXXX--XXXXXXXXXXXXXXXGSPGDGQ-WIVPITLCCGSYDVCKNFLLYNKSDS 508
G+P+I G+P G W VP+T D+ FLL K+D
Sbjct: 484 GFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDV 543
Query: 509 FDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRF 566
+ E + WIK NV G+Y V Y+ D L ++ +S DR
Sbjct: 544 LILPEEV-----------EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRA 592
Query: 567 GILDDHFALCMARQQTLTSLLTLMASYSEETE----YTVLSNLITISYKIGRIAADARPE 622
++++ F L + ++ L L ETE + L+ LI + YK+ + E
Sbjct: 593 SLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPM-YKL--MEKRDMNE 649
Query: 623 LLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFH 682
+ K F I L ++ +K W + S + +LR ++ + ++ + A F
Sbjct: 650 VETQFKAFLIRLLRDLIDKQTWTDEGSVS--ERMLRSQLLLLACVHNYQPCVQRAEGYFR 707
Query: 683 AFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLAS 742
+ LP D+ A + V A G++ L Y+ + S EK++I A
Sbjct: 708 KWKESNGNLSLPVDVTLAVFA-----VGAQSTEGWDFLYSKYQFSLSSTEKSQI--EFAL 760
Query: 743 CPDVNIVLEVLNFLL-----SSEVRSQDAVYGLAVSIEGRET-----AWKWLKDNWDHIS 792
C N E L +LL ++++Q+ + +++ GR AW++L+ NW+ +
Sbjct: 761 CRTQN--KEKLQWLLDESFKGDKIKTQE--FPQILTLIGRNPVGYPLAWQFLRKNWNKLV 816
Query: 793 KTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKW 850
+ + G I + + F++ ++ EV+ FFSS + R ++Q+IE ++ N W
Sbjct: 817 QKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGW 876
Query: 851 VE 852
++
Sbjct: 877 MD 878
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 283/902 (31%), Positives = 449/902 (49%), Gaps = 89/902 (9%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNK 68
RLP++ +P YD+ + +LT+ F G+ +++ T I+L++ L I+ ++ K
Sbjct: 59 RLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATL---RK 115
Query: 69 VSSKAL--EPTKVELVEADEILVLEFAETLPTGMG-VLAIGFEGVLNDKMKGFYRSSYEL 125
+ + L EP +V E + L E L G+ + I + G L++ GFY+S+Y
Sbjct: 116 GAGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRT 175
Query: 126 N-GEKKNMAVTQFEPADARRCFPCWDEPACKITLDV-----PSELVALSNMPVIDE-KVD 178
GE + +A TQFEP AR FPC+DEPA K + + P L A+SNMP++ V
Sbjct: 176 KEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHL-AISNMPLVKSVTVA 234
Query: 179 GNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVK 238
+ + + MSTYLVA +I F+ V T G+KV VY K NQ +AL+ AV
Sbjct: 235 EGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVT 294
Query: 239 TLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVA 298
LE Y++YF++PY LPK D+ AIPDF +GAMEN+GL TYRE+ALL+D + S+A++K +
Sbjct: 295 LLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGIT 354
Query: 299 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGL 358
VAHELAHQWFGNLVTMEWW LWLNEGFA ++ +++ PE K+ F +C + +
Sbjct: 355 MTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAM 414
Query: 359 RLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKY 418
+D L SHP+ V + +I E+FD +SY KGA ++ ML+ YL A+ F+ + Y++K+
Sbjct: 415 EVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKH 474
Query: 419 ACSNAKTEDLWAALEE---------------------------GSGEPVNKLMNSWTKQK 451
+ N K EDLW ++ G V +MN+WT QK
Sbjct: 475 SYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQK 534
Query: 452 GYPVIXXXX--XXXXXXXXXXXXXXXGSPGDGQ-WIVPITLCCGSYDVCKNFLLYNKSDS 508
G+P+I G+P G W VP+T D+ FLL K+D
Sbjct: 535 GFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDV 594
Query: 509 FDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRF 566
+ E + WIK NV G+Y V Y+ D L ++ +S DR
Sbjct: 595 LILPEEV-----------EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRA 643
Query: 567 GILDDHFALCMARQQTLTSLLTLMASYSEETE----YTVLSNLITISYKIGRIAADARPE 622
++++ F L + ++ L L ETE + L+ LI + YK+ + E
Sbjct: 644 SLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPM-YKL--MEKRDMNE 700
Query: 623 LLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFH 682
+ K F I L ++ +K W + S + +LR ++ + ++ + A F
Sbjct: 701 VETQFKAFLIRLLRDLIDKQTWTDEGSVS--ERMLRSQLLLLACVHNYQPCVQRAEGYFR 758
Query: 683 AFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLAS 742
+ LP D+ A + V A G++ L Y+ + S EK++I A
Sbjct: 759 KWKESNGNLSLPVDVTLAVFA-----VGAQSTEGWDFLYSKYQFSLSSTEKSQI--EFAL 811
Query: 743 CPDVNIVLEVLNFLL-----SSEVRSQDAVYGLAVSIEGRET-----AWKWLKDNWDHIS 792
C N E L +LL ++++Q+ + +++ GR AW++L+ NW+ +
Sbjct: 812 CRTQN--KEKLQWLLDESFKGDKIKTQE--FPQILTLIGRNPVGYPLAWQFLRKNWNKLV 867
Query: 793 KTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKW 850
+ + G I + + F++ ++ EV+ FFSS + R ++Q+IE ++ N W
Sbjct: 868 QKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGW 927
Query: 851 VE 852
++
Sbjct: 928 MD 929
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 285/895 (31%), Positives = 440/895 (49%), Gaps = 67/895 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCK-----FGGSVAIDVDVVGDTKFIVLNAADL--TINNR 61
RLP +P Y++ L P LT F G + T I++++ L T
Sbjct: 53 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFICQEPTDVIIIHSKKLNYTTQGH 112
Query: 62 SVSFTNKVSSKALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKGFYR 120
V S+ E + ELVE E LV+ +L P M + F+G L D + GFYR
Sbjct: 113 MVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAGFYR 172
Query: 121 SSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKITLDV----PSELVALSNMPVIDEK 176
S Y KK +A TQ + DAR+ FPC+DEPA K T ++ P+ L ALSNMP
Sbjct: 173 SEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSS 232
Query: 177 V----DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGK-- 230
D N ++ +P+MSTYL+A ++ F V + +G+ +R++ + +G
Sbjct: 233 TPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGM 292
Query: 231 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSA 290
+ALNV L + ++ Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q S+
Sbjct: 293 YALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSS 352
Query: 291 AANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQF 350
+NK+RV TV+AHELAHQWFGNLVT+ WW LWLNEGFA++V YL AD P W +
Sbjct: 353 ISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLI 412
Query: 351 LD-ECTEGLRLDGLAESHPIEV---EVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAEC 406
+ + + +D LA SHP+ EVN +I E+FD+ISY KGASVIRML N+L +
Sbjct: 413 VPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDL 472
Query: 407 FQRSLASYIKKYACSNAKTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPVIXX 458
F+ LASY+ +A N DLW L++ + V +M+ WT Q G+PVI
Sbjct: 473 FKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITV 532
Query: 459 XXXXXXXXXX-----XXXXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKE 513
S D WIVPI+ KN ++ + D+ +
Sbjct: 533 DTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRDVSQ 585
Query: 514 LLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGILDD 571
D+ W+ LNVN TG+++V YD+D + + ++ + + +R ++ D
Sbjct: 586 AQNDLFKTASDD--WVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYD 643
Query: 572 HFALCMARQQTLTSLLTLMASYSEETEY----TVLSNLITISYKIGRIAADARPELLDYL 627
F L A +T L + E EY LS+L S R ++ + YL
Sbjct: 644 SFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMKKYL 701
Query: 628 KQFFISLFQNSAEKL--GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFL 685
++ LFQ+ E L W +P E+ +D + G + N A F ++
Sbjct: 702 RKQVEPLFQH-FETLTKNWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWM 759
Query: 686 ADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPD 745
+D + P++R Y ++ + ++ ++ L E ++ S+LA +
Sbjct: 760 SDPENNPIHPNLRSTIYC---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNE 816
Query: 746 VNIVLEVLNFLLSSE-VRSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FL 800
V ++ L + L+ + +R QDA + +A ++ G+ AW +++ NW + + +G G F
Sbjct: 817 VWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFS 876
Query: 801 ITRFISSIVSPFASYEKVREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 852
+ I + F+S +++++E+F + R L Q++E+ + N KWV+
Sbjct: 877 FSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 931
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust.
Identities = 285/895 (31%), Positives = 440/895 (49%), Gaps = 67/895 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCK-----FGGSVAIDVDVVGDTKFIVLNAADL--TINNR 61
RLP +P Y++ L P LT F G + T I++++ L T
Sbjct: 10 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGH 69
Query: 62 SVSFTNKVSSKALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKGFYR 120
V S+ E + ELVE E LV+ +L P M + F+G L D + GFYR
Sbjct: 70 MVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAGFYR 129
Query: 121 SSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKITLDV----PSELVALSNMPVIDEK 176
S Y KK +A TQ + DAR+ FPC+DEPA K T ++ P+ L ALSNMP
Sbjct: 130 SEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSS 189
Query: 177 V----DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGK-- 230
D N ++ +P+MSTYL+A ++ F V + +G+ +R++ + +G
Sbjct: 190 TPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGM 249
Query: 231 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSA 290
+ALNV L + ++ Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q S+
Sbjct: 250 YALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSS 309
Query: 291 AANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQF 350
+NK+RV TV+AHELAHQWFGNLVT+ WW LWLNEGFA++V YL AD P W +
Sbjct: 310 ISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLI 369
Query: 351 LD-ECTEGLRLDGLAESHPIEV---EVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAEC 406
+ + + +D LA SHP+ EVN +I E+FD+ISY KGASVIRML N+L +
Sbjct: 370 VPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDL 429
Query: 407 FQRSLASYIKKYACSNAKTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPVIXX 458
F+ LASY+ +A N DLW L++ + V +M+ WT Q G+PVI
Sbjct: 430 FKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITV 489
Query: 459 XXXXXXXXXX-----XXXXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKE 513
S D WIVPI+ KN ++ + D+ +
Sbjct: 490 DTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRDVSQ 542
Query: 514 LLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGILDD 571
D+ W+ LNVN TG+++V YD+D + + ++ + + +R ++ D
Sbjct: 543 AQNDLFKTASDD--WVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYD 600
Query: 572 HFALCMARQQTLTSLLTLMASYSEETEY----TVLSNLITISYKIGRIAADARPELLDYL 627
F L A +T L + E EY LS+L S R ++ + YL
Sbjct: 601 SFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMKKYL 658
Query: 628 KQFFISLFQNSAEKL--GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFL 685
++ LFQ+ E L W +P E+ +D + G + N A F ++
Sbjct: 659 RKQVEPLFQH-FETLTKNWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWM 716
Query: 686 ADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPD 745
+D + P++R Y ++ + ++ ++ L E ++ S+LA +
Sbjct: 717 SDPENNPIHPNLRSTIYC---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNE 773
Query: 746 VNIVLEVLNFLLSSE-VRSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FL 800
V ++ L + L+ + +R QDA + +A ++ G+ AW +++ NW + + +G G F
Sbjct: 774 VWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFS 833
Query: 801 ITRFISSIVSPFASYEKVREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 852
+ I + F+S +++++E+F + R L Q++E+ + N KWV+
Sbjct: 834 FSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 888
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust.
Identities = 285/895 (31%), Positives = 440/895 (49%), Gaps = 67/895 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCK-----FGGSVAIDVDVVGDTKFIVLNAADL--TINNR 61
RLP +P Y++ L P LT F G + T I++++ L T
Sbjct: 9 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGH 68
Query: 62 SVSFTNKVSSKALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKGFYR 120
V S+ E + ELVE E LV+ +L P M + F+G L D + GFYR
Sbjct: 69 MVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAGFYR 128
Query: 121 SSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKITLDV----PSELVALSNMPVIDEK 176
S Y KK +A TQ + DAR+ FPC+DEPA K T ++ P+ L ALSNMP
Sbjct: 129 SEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSS 188
Query: 177 V----DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGK-- 230
D N ++ +P+MSTYL+A ++ F V + +G+ +R++ + +G
Sbjct: 189 TPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGM 248
Query: 231 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSA 290
+ALNV L + ++ Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q S+
Sbjct: 249 YALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSS 308
Query: 291 AANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQF 350
+NK+RV TV+AHELAHQWFGNLVT+ WW LWLNEGFA++V YL AD P W +
Sbjct: 309 ISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLI 368
Query: 351 LD-ECTEGLRLDGLAESHPIEV---EVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAEC 406
+ + + +D LA SHP+ EVN +I E+FD+ISY KGASVIRML N+L +
Sbjct: 369 VPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDL 428
Query: 407 FQRSLASYIKKYACSNAKTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPVIXX 458
F+ LASY+ +A N DLW L++ + V +M+ WT Q G+PVI
Sbjct: 429 FKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITV 488
Query: 459 XXXXXXXXXX-----XXXXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKE 513
S D WIVPI+ KN ++ + D+ +
Sbjct: 489 DTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRDVSQ 541
Query: 514 LLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGILDD 571
D+ W+ LNVN TG+++V YD+D + + ++ + + +R ++ D
Sbjct: 542 AQNDLFKTASDD--WVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYD 599
Query: 572 HFALCMARQQTLTSLLTLMASYSEETEY----TVLSNLITISYKIGRIAADARPELLDYL 627
F L A +T L + E EY LS+L S R ++ + YL
Sbjct: 600 SFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMKKYL 657
Query: 628 KQFFISLFQNSAEKL--GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFL 685
++ LFQ+ E L W +P E+ +D + G + N A F ++
Sbjct: 658 RKQVEPLFQH-FETLTKNWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWM 715
Query: 686 ADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPD 745
+D + P++R Y ++ + ++ ++ L E ++ S+LA +
Sbjct: 716 SDPENNPIHPNLRSTIYC---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNE 772
Query: 746 VNIVLEVLNFLLSSE-VRSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FL 800
V ++ L + L+ + +R QDA + +A ++ G+ AW +++ NW + + +G G F
Sbjct: 773 VWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFS 832
Query: 801 ITRFISSIVSPFASYEKVREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 852
+ I + F+S +++++E+F + R L Q++E+ + N KWV+
Sbjct: 833 FSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 887
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust.
Identities = 287/910 (31%), Positives = 452/910 (49%), Gaps = 105/910 (11%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNK 68
RLP++ +P YD+ + +LT+ F G+ +++ T I+L++ L I+ ++ K
Sbjct: 17 RLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATL---RK 73
Query: 69 VSSKAL--EPTKVELVEADEILVLEFAETLPTGMG-VLAIGFEGVLNDKMKGFYRSSYEL 125
+ + L EP +V E + L E L G+ + I + G L++ GFY+S+Y
Sbjct: 74 GAGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRT 133
Query: 126 N-GEKKNMAVTQFEPADARRCFPCWDEPACKITLDV-----PSELVALSNMPVIDEKVDG 179
GE + +A TQFEP AR FPC+DEPA K + + P L A+SNMP++
Sbjct: 134 KEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHL-AISNMPLV------ 186
Query: 180 NMKTVSYQESPI---------MSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGK 230
K+V+ E I MSTYLVA +I F+ V T G+KV VY K NQ
Sbjct: 187 --KSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQAD 244
Query: 231 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSA 290
+AL+ AV LE Y++YF++PY LPK D+ AIPDF +GAMEN+GL TYRE+ALL+D + S+
Sbjct: 245 YALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSS 304
Query: 291 AANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQF 350
A++K + VAHELAHQWFGNLVTMEWW LWLNEGFA ++ +++ PE K+ F
Sbjct: 305 ASSKLDITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF 364
Query: 351 LDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRS 410
+C + + +D L SHP+ V + +I E+FD +SY KGA ++ ML+ YL A+ F+
Sbjct: 365 FGKCFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSG 424
Query: 411 LASYIKKYACSNAKTEDLW---AALEEGSGEP------------------------VNKL 443
+ Y++K++ N K EDLW A++ G V +
Sbjct: 425 IVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQERVDVKTM 484
Query: 444 MNSWTKQKGYPVIXXXX--XXXXXXXXXXXXXXXGSPGDGQ-WIVPITLCCGSYDVCKNF 500
MN+WT Q+G+P+I G+P G W VP+T D+ F
Sbjct: 485 MNTWTLQRGFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRF 544
Query: 501 LLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ- 559
LL K+D + E + WIK NV G+Y V Y+ D L ++
Sbjct: 545 LLKTKTDVLILPEEV-----------EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHT 593
Query: 560 -LSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETE----YTVLSNLITISYKIGR 614
+S DR ++++ F L + ++ L L ETE + L+ LI + YK+
Sbjct: 594 AVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPM-YKL-- 650
Query: 615 IAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETL 674
+ E+ K F I L ++ +K W + S + +LR E+ + ++ +
Sbjct: 651 MEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVS--ERMLRSELLLLACVHNYQPCV 708
Query: 675 NEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 734
A F + LP D+ A + V A G++ L Y+ + S EK+
Sbjct: 709 QRAEGYFRKWKESNGNLSLPVDVTLAVFA-----VGAQSTEGWDFLYSKYQFSLSSTEKS 763
Query: 735 RILSSLASCPDVNIVLEVLNFLL-----SSEVRSQDAVYGLAVSIEGRET-----AWKWL 784
+I A C N E L +LL ++++Q+ + +++ GR AW++L
Sbjct: 764 QI--EFALCRTQN--KEKLQWLLDESFKGDKIKTQE--FPQILTLIGRNPVGYPLAWQFL 817
Query: 785 KDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIE 842
+ NW+ + + + G I + + F++ ++ EV+ FFSS + R ++Q+IE
Sbjct: 818 RKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIE 877
Query: 843 RVQINAKWVE 852
++ N W++
Sbjct: 878 TIEENIGWMD 887
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 284/895 (31%), Positives = 440/895 (49%), Gaps = 67/895 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCK-----FGGSVAIDVDVVGDTKFIVLNAADL--TINNR 61
RLP +P Y++ L P LT F G + T I++++ L T
Sbjct: 9 RLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGH 68
Query: 62 SVSFTNKVSSKALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMKGFYR 120
V S+ E + ELVE E LV+ +L P M + F+G L D + GFYR
Sbjct: 69 MVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAGFYR 128
Query: 121 SSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKITLDV----PSELVALSNMPVIDEK 176
S Y KK +A TQ + DAR+ FPC+DEPA K T ++ P+ L ALSNMP
Sbjct: 129 SEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSS 188
Query: 177 V----DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGK-- 230
D N ++ +P+MSTYL+A ++ F V + +G+ +R++ + +G
Sbjct: 189 TPLAEDPNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGM 248
Query: 231 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSA 290
+ALNV L + ++ Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q S+
Sbjct: 249 YALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSS 308
Query: 291 AANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQF 350
+NK+RV TV+AH+LAHQWFGNLVT+ WW LWLNEGFA++V YL AD P W +
Sbjct: 309 ISNKERVVTVIAHQLAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLI 368
Query: 351 LD-ECTEGLRLDGLAESHPIEV---EVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAEC 406
+ + + +D LA SHP+ EVN +I E+FD+ISY KGASVIRML N+L +
Sbjct: 369 VPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDL 428
Query: 407 FQRSLASYIKKYACSNAKTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPVIXX 458
F+ LASY+ +A N DLW L++ + V +M+ WT Q G+PVI
Sbjct: 429 FKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITV 488
Query: 459 XXXXXXXXXX-----XXXXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKE 513
S D WIVPI+ KN ++ + D+ +
Sbjct: 489 DTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRDVSQ 541
Query: 514 LLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGILDD 571
D+ W+ LNVN TG+++V YD+D + + ++ + + +R ++ D
Sbjct: 542 AQNDLFKTASDD--WVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYD 599
Query: 572 HFALCMARQQTLTSLLTLMASYSEETEY----TVLSNLITISYKIGRIAADARPELLDYL 627
F L A +T L + E EY LS+L S R ++ + YL
Sbjct: 600 SFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMKKYL 657
Query: 628 KQFFISLFQNSAEKL--GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFL 685
++ LFQ+ E L W +P E+ +D + G + N A F ++
Sbjct: 658 RKQVEPLFQH-FETLTKNWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWM 715
Query: 686 ADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPD 745
+D + P++R Y ++ + ++ ++ L E ++ S+LA +
Sbjct: 716 SDPENNPIHPNLRSTIYC---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNE 772
Query: 746 VNIVLEVLNFLLSSE-VRSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FL 800
V ++ L + L+ + +R QDA + +A ++ G+ AW +++ NW + + +G G F
Sbjct: 773 VWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFS 832
Query: 801 ITRFISSIVSPFASYEKVREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 852
+ I + F+S +++++E+F + R L Q++E+ + N KWV+
Sbjct: 833 FSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 887
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 286/895 (31%), Positives = 441/895 (49%), Gaps = 68/895 (7%)
Query: 9 RLPKFAVPKRYDIRLTPDLTSCK-----FGGSVAIDVDVVGDTKFIVLNAADLTINNRSV 63
RLP P Y + L P LT F GS + T I++++ L N ++
Sbjct: 11 RLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKL---NYTL 67
Query: 64 SFTNKV------SSKALEPTKVELVEADEILVLEFAETL-PTGMGVLAIGFEGVLNDKMK 116
S ++V S+ + K ELVE E LV+ +L + FEG L D +
Sbjct: 68 SQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGSLVKDSQYEMDSEFEGELADDLA 127
Query: 117 GFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACK----ITLDVPSELVALSNM-- 170
GFYRS Y +K +A TQ + ADAR+ FPC+DEPA K ITL P +L ALSNM
Sbjct: 128 GFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLP 187
Query: 171 --PVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGK--A 226
P D N + +P MSTYL+A ++ FDYVE S+G+ +R++ + A
Sbjct: 188 KGPSTPLPEDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAA 247
Query: 227 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD 286
G +ALNV L + ++ PY LPK D I +PDF AGAMEN+GLVTYRE +LL+D
Sbjct: 248 GHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFDP 307
Query: 287 QHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKI 346
S+++NK+RV TV+AHELAHQWFGNLVT+EWW LWLNEGFA++V YL AD P W +
Sbjct: 308 LSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNL 367
Query: 347 WT-QFLDECTEGLRLDGLAESHPIEV---EVNHTGEIDEIFDAISYRKGASVIRMLQNYL 402
L++ + +D LA SHP+ E+N +I E+FDAISY KGASV+RML ++L
Sbjct: 368 KDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQISELFDAISYSKGASVLRMLSSFL 427
Query: 403 GAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE-------PVNKLMNSWTKQKGYPV 455
+ F++ LASY+ +A N +LW L+E V +MN WT Q G+PV
Sbjct: 428 SEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPV 487
Query: 456 IXXXXXXXXXXXXX-----XXXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFD 510
I S + WIVPIT +L+ D
Sbjct: 488 ITVDTSTGTLSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLI----DVRA 543
Query: 511 IKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGI 568
+L S ++ W+ LN+N TG+YRV YD++ ++ ++ + +R I
Sbjct: 544 QNDLFSTSGNE------WVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQI 597
Query: 569 LDDHFALCMARQQTLTSLLTLMASYSEETEYTVL-SNLITISY-KIGRIAADARPELLDY 626
++D F L A + +T L EE +Y + L ++SY K+ ++ + +Y
Sbjct: 598 INDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNY 657
Query: 627 LKQFFISLFQNSAEKL-GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFL 685
LK+ LF + W P E+ +D + G E S F ++
Sbjct: 658 LKKQVTPLFIHFRNNTNNWREIP-ENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWM 716
Query: 686 ADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPD 745
+ + P++R Y ++ ++ +R L E ++ ++LA +
Sbjct: 717 ENPNNNPIHPNLRSTVYC---NAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKE 773
Query: 746 VNIVLEVLNFLLSSE-VRSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FL 800
+ I+ L++ L+ + +R QDA + + ++ G+ W +++ NW + +G G F
Sbjct: 774 LWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFS 833
Query: 801 ITRFISSIVSPFASYEKVREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 852
+ I ++ F++ +++++E+F + R L Q++E+ + N KWV+
Sbjct: 834 FSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVK 888
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 272/868 (31%), Positives = 425/868 (48%), Gaps = 123/868 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTIN-----NRSVSFT-NKVS 70
++YD+ L D+ F G+ I D GD IVL+A L IN R +FT + +
Sbjct: 4 EKYDLTLDFDIQKRTFNGTETITADA-GD---IVLDAVGLQINWMKVNGRDTAFTYDGQT 59
Query: 71 SKA---LEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNG 127
+A +P K+E I F G ++D + G Y + G
Sbjct: 60 VRAPGDSQPQKIE------------------------ISFAGKVSDSLSGIYYA-----G 90
Query: 128 EKKNMAVTQFEPADARRCFPCWDEPACK----ITLDVPSELVALSNMPVIDEKVDGNMKT 183
+ M T F+ DARR FPC D PA K IT+ + + A+SNMP +V K
Sbjct: 91 RENGMITTHFQATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIEV-SERKV 149
Query: 184 VSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELY 243
V +Q++P MSTYL+ V IG F Y + D + + K + K+ L++A K++E Y
Sbjct: 150 VEFQDTPRMSTYLLYVGIGKFRYEYEKYRD---IDLILASLKDIRSKYPLDMARKSVEFY 206
Query: 244 KEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD--QHSAAANKQRVATVV 301
+ YF +PY+LPK+ +I++P+F AGAMEN+G +T+RE +Y D ++SA K+ ATV+
Sbjct: 207 ENYFGIPYALPKMHLISVPEFGAGAMENWGAITFRE---IYMDIAENSAVTVKRNSATVI 263
Query: 302 AHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEG-LRL 360
AHE+AHQWFG+LVTM+WW LWLNE FAT++SY D+LFPEW W F T G LR
Sbjct: 264 AHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRS 323
Query: 361 DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYAC 420
D L +HPIEV+V EI +IFD ISY KGAS++RM+++Y G E F++ ++ Y+ +
Sbjct: 324 DSLKNTHPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKF 383
Query: 421 SNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVIXXXXXXXXXXXXXXXXXXXGSPGD 480
NA+ DLW A+E+ SG+PV ++M W K GYPVI G +
Sbjct: 384 GNAEGSDLWTAIEDVSGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLLNGEE-E 442
Query: 481 GQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYR 540
G+W VP+ + K D + + LL S E D G IK+N + GFYR
Sbjct: 443 GRWPVPVNI--------------KKKDGVE-RILLEDEASIEAD--GLIKINADSAGFYR 485
Query: 541 VKYDK-DLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEY 599
V YD + +G+ + LS DR G++DD FA ++ + + ++ ++ ++
Sbjct: 486 VLYDDATFSDVMGH---YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDH 542
Query: 600 TVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAE-----KLGWDSKPGESHLD 654
V++ ++ ++YL+ F + A ++ + + + +L
Sbjct: 543 NVITAIVG---------------QMEYLR-MLTHAFDDDARAFCRSRMQFLTGKQDENLK 586
Query: 655 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDR 714
L G + + L ++ + E SK F F + P++R + +A + D
Sbjct: 587 IAL-GRV-SRLYVMVDESYAEEMSKLFKDFDS------AEPEMRSS--IATAYALVTGDL 636
Query: 715 SGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVYGLAVSI 774
G LL +R D +++ RI+S+ + V + +E++ QD + + ++
Sbjct: 637 KG---LLEKFRSVDRDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMISFFSSAL 693
Query: 775 E---GRETAWKWLKDNWDHISKTWGSGFLITRFISSIVS---PFASYEKVREVEEFFSSR 828
E GRE ++ N D I + F R S V P + + E+ +
Sbjct: 694 ETLPGRE----FIFANLDRIIRLVIRYFTGNRTASRTVEMMIPVIGLDHP-DAEDIVRNI 748
Query: 829 CKPYIARTLRQSIERVQINAKWVESIRN 856
I+ L + IE + +N K VE IR
Sbjct: 749 GSKNISMGLAKGIEMLAVNRKLVERIRQ 776
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 272/868 (31%), Positives = 424/868 (48%), Gaps = 123/868 (14%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTIN-----NRSVSFT-NKVS 70
++YD+ L D+ F G+ I D GD IVL+A L IN R +FT + +
Sbjct: 4 EKYDLTLDFDIQKRTFNGTETITADA-GD---IVLDAVGLQINWMKVNGRDTAFTYDGQT 59
Query: 71 SKA---LEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNG 127
+A +P K+E I F G ++D + G Y + G
Sbjct: 60 VRAPGDSQPQKIE------------------------ISFAGKVSDSLSGIYYA-----G 90
Query: 128 EKKNMAVTQFEPADARRCFPCWDEPACK----ITLDVPSELVALSNMPVIDEKVDGNMKT 183
+ M T FE DARR FPC D PA K IT+ + + A+SNMP +V K
Sbjct: 91 RENGMITTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIEV-SERKV 149
Query: 184 VSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELY 243
V +Q++P MSTYL+ V IG F Y + D + + K + K+ L++A K++E Y
Sbjct: 150 VEFQDTPRMSTYLLYVGIGKFRYEYEKYRD---IDLILASLKDIRSKYPLDMARKSVEFY 206
Query: 244 KEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD--QHSAAANKQRVATVV 301
+ YF +PY+LPK+ +I++P+F AGAMEN+G +T+RE +Y D ++SA K+ A V+
Sbjct: 207 ENYFGIPYALPKMHLISVPEFGAGAMENWGAITFRE---IYMDIAENSAVTVKRNSANVI 263
Query: 302 AHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEG-LRL 360
AHE+AHQWFG+LVTM+WW LWLNE FAT++SY D+LFPEW W F T G LR
Sbjct: 264 AHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRS 323
Query: 361 DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYAC 420
D L +HPIEV+V EI +IFD ISY KGAS++RM+++Y G E F++ ++ Y+ +
Sbjct: 324 DSLKNTHPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKF 383
Query: 421 SNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVIXXXXXXXXXXXXXXXXXXXGSPGD 480
NA+ DLW A+E+ SG+PV ++M W K GYPVI G +
Sbjct: 384 GNAEGSDLWTAIEDVSGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLLNGEE-E 442
Query: 481 GQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYR 540
G+W VP+ + K D + + LL S E D G IK+N + GFYR
Sbjct: 443 GRWPVPVNI--------------KKKDGVE-RILLEDEASIEAD--GLIKINADSAGFYR 485
Query: 541 VKYDK-DLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEY 599
V YD + +G+ + LS DR G++DD FA ++ + + ++ ++ ++
Sbjct: 486 VLYDDATFSDVMGH---YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDH 542
Query: 600 TVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAE-----KLGWDSKPGESHLD 654
V++ ++ ++YL+ F + A ++ + + + +L
Sbjct: 543 NVITAIVG---------------QMEYLR-MLTHAFDDDARAFCRSRMQFLTGKQDENLK 586
Query: 655 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDR 714
L G + + L ++ + E SK F F + P++R + +A + D
Sbjct: 587 IAL-GRV-SRLYVMVDESYAEEMSKLFKDFDS------AEPEMRSS--IATAYALVTGDL 636
Query: 715 SGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVYGLAVSI 774
G LL +R D +++ RI+S+ + V + +E++ QD + + ++
Sbjct: 637 KG---LLEKFRSVDRDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMISFFSSAL 693
Query: 775 E---GRETAWKWLKDNWDHISKTWGSGFLITRFISSIVS---PFASYEKVREVEEFFSSR 828
E GRE ++ N D I + F R S V P + + E+ +
Sbjct: 694 ETLPGRE----FIFANLDRIIRLVIRYFTGNRTASRTVEMMIPVIGLDHP-DAEDIVRNI 748
Query: 829 CKPYIARTLRQSIERVQINAKWVESIRN 856
I+ L + IE + +N K VE IR
Sbjct: 749 GSKNISMGLAKGIEMLAVNRKLVERIRQ 776
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 161/359 (44%), Gaps = 27/359 (7%)
Query: 121 SSYELNG--EKKNMAVTQFEPADARRCFPCWDEPA------CKITLDVPSELVALSNMPV 172
++Y L G + KN+ V+Q E RR D P +T D V LSN
Sbjct: 105 TNYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDK 164
Query: 173 IDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKA 226
++E ++ G + + P+ YL AVV G Y+ +T +++ V+ +
Sbjct: 165 VNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYV 224
Query: 227 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD 286
++ ++AL K++ ++YF + Y L +L+++A+ DF GAMEN GL + +LL
Sbjct: 225 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 284
Query: 287 QHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKI 346
++S + R+ TVV HE HQ+ GN VT+ W L L EG L ++ +
Sbjct: 285 KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTT 344
Query: 347 WTQFLDECTEGLRL-DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 405
+D L D SHPI E ++ + Y KG+ V+RM LG E
Sbjct: 345 RLSHVDLLRSVQFLEDSSPLSHPIRPE--SYVSMENFYTTTVYDKGSEVMRMYLTILGEE 402
Query: 406 CFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS--------WTKQKGYPVI 456
+++ YIKK + A ED A+E+ + K NS W Q G P +
Sbjct: 403 YYKKGFDIYIKKNDGNTATCEDFNYAMEQAYK--MKKADNSANLNQYLLWFSQSGTPHV 459
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 161/359 (44%), Gaps = 27/359 (7%)
Query: 121 SSYELNG--EKKNMAVTQFEPADARRCFPCWDEPA------CKITLDVPSELVALSNMPV 172
++Y L G + KN+ V+Q E RR D P +T D V LSN
Sbjct: 106 TNYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDK 165
Query: 173 IDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKA 226
++E ++ G + + P+ YL AVV G Y+ +T +++ V+ +
Sbjct: 166 VNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYV 225
Query: 227 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD 286
++ ++AL K++ ++YF + Y L +L+++A+ DF GAMEN GL + +LL
Sbjct: 226 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 285
Query: 287 QHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKI 346
++S + R+ TVV HE HQ+ GN VT+ W L L EG L ++ +
Sbjct: 286 KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTT 345
Query: 347 WTQFLDECTEGLRL-DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 405
+D L D SHPI E ++ + Y KG+ V+RM LG E
Sbjct: 346 RLSHVDLLRSVQFLEDSSPLSHPIRPE--SYVSMENFYTTTVYDKGSEVMRMYLTILGEE 403
Query: 406 CFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS--------WTKQKGYPVI 456
+++ YIKK + A ED A+E+ + K NS W Q G P +
Sbjct: 404 YYKKGFDIYIKKNDGNTATCEDFNYAMEQAYK--MKKADNSANLNQYLLWFSQSGTPHV 460
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 161/359 (44%), Gaps = 27/359 (7%)
Query: 121 SSYELNG--EKKNMAVTQFEPADARRCFPCWDEPA------CKITLDVPSELVALSNMPV 172
++Y L G + KN+ V+Q E RR D P +T D V LSN
Sbjct: 106 TNYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDK 165
Query: 173 IDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKA 226
++E ++ G + + P+ YL AVV G Y+ +T +++ V+ +
Sbjct: 166 VNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYV 225
Query: 227 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD 286
++ ++AL K++ ++YF + Y L +L+++A+ DF GAMEN GL + +LL
Sbjct: 226 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 285
Query: 287 QHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKI 346
++S + R+ TVV HE HQ+ GN VT+ W L L EG L ++ +
Sbjct: 286 KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTT 345
Query: 347 WTQFLDECTEGLRL-DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 405
+D L D SHPI E ++ + Y KG+ V+RM LG E
Sbjct: 346 RLSHVDLLRSVQFLEDSSPLSHPIRPE--SYVSMENFYTTTVYDKGSEVMRMYLTILGEE 403
Query: 406 CFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS--------WTKQKGYPVI 456
+++ YIKK + A ED A+E+ + K NS W Q G P +
Sbjct: 404 YYKKGFDIYIKKNDGNTATCEDFNYAMEQAYK--MKKADNSANLNQYLLWFSQSGTPHV 460
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 126 bits (316), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 160/359 (44%), Gaps = 27/359 (7%)
Query: 121 SSYELNG--EKKNMAVTQFEPADARRCFPCWDEPA------CKITLDVPSELVALSNMPV 172
++Y L G + KN+ V+Q E RR D P +T D V LSN
Sbjct: 105 TNYALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDK 164
Query: 173 IDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKA 226
++E ++ G + + P+ YL AVV G Y+ +T +++ V+ +
Sbjct: 165 VNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYV 224
Query: 227 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDD 286
++ ++AL K++ ++YF + Y L +L+++A+ DF GAMEN GL + +LL
Sbjct: 225 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 284
Query: 287 QHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKI 346
++S + R+ TVV HE HQ+ GN VT+ W L L EG L ++ +
Sbjct: 285 KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTT 344
Query: 347 WTQFLDECTEGLRL-DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 405
+D L D SHPI E + + Y KG+ V+RM LG E
Sbjct: 345 RLSHVDLLRSVQFLEDSSPLSHPIRPE--SYVSMANFYTTTVYDKGSEVMRMYLTILGEE 402
Query: 406 CFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS--------WTKQKGYPVI 456
+++ YIKK + A ED A+E+ + K NS W Q G P +
Sbjct: 403 YYKKGFDIYIKKNDGNTATCEDFNYAMEQAYK--MKKADNSANLNQYLLWFSQSGTPHV 459
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 199/469 (42%), Gaps = 60/469 (12%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 25 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 84
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 85 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 129
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKIT----LDVPSELVALSNMPVI-----DEK 176
+G++ +Q + R PC D P+ K+T + VP ELVAL M I +
Sbjct: 130 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 187
Query: 177 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 236
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 188 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 243
Query: 237 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 295
L++ E PY + D++ +P F G MEN L T L A +
Sbjct: 244 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDK 293
Query: 296 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDEC 354
++ V+AHE++H W GNLVT + W H WLNEG ++ LF E ++ +
Sbjct: 294 SLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 353
Query: 355 TEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSL 411
+ E+HP V +ID + ++ Y KG +++ L+ LG E F L
Sbjct: 354 ELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFL 413
Query: 412 ASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 456
+Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 414 KAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 462
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 199/469 (42%), Gaps = 60/469 (12%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 19 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 78
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 79 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 123
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKIT----LDVPSELVALSNMPVI-----DEK 176
+G++ +Q + R PC D P+ K+T + VP ELVAL M I +
Sbjct: 124 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 181
Query: 177 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 236
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 182 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 237
Query: 237 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 295
L++ E PY + D++ +P F G MEN L T L A +
Sbjct: 238 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDK 287
Query: 296 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDEC 354
++ V+AHE++H W GNLVT + W H WLNEG ++ LF E ++ +
Sbjct: 288 SLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 347
Query: 355 TEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSL 411
+ E+HP V +ID + ++ Y KG +++ L+ LG E F L
Sbjct: 348 ELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFL 407
Query: 412 ASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 456
+Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 408 KAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 456
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 199/469 (42%), Gaps = 60/469 (12%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 17 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 76
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 77 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 121
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKIT----LDVPSELVALSNMPVI-----DEK 176
+G++ +Q + R PC D P+ K+T + VP ELVAL M I +
Sbjct: 122 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 179
Query: 177 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 236
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 180 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 235
Query: 237 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 295
L++ E PY + D++ +P F G MEN L T L A +
Sbjct: 236 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDK 285
Query: 296 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDEC 354
++ V+AHE++H W GNLVT + W H WLNEG ++ LF E ++ +
Sbjct: 286 SLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 345
Query: 355 TEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSL 411
+ E+HP V +ID + ++ Y KG +++ L+ LG E F L
Sbjct: 346 ELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFL 405
Query: 412 ASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 456
+Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 406 KAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 454
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 199/469 (42%), Gaps = 60/469 (12%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 19 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 78
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 79 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 123
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKIT----LDVPSELVALSNMPVI-----DEK 176
+G++ +Q + R PC D P+ K+T + VP ELVAL M I +
Sbjct: 124 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 181
Query: 177 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 236
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 182 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 237
Query: 237 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 295
L++ E PY + D++ +P F G MEN L T L A +
Sbjct: 238 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDK 287
Query: 296 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDEC 354
++ V+AHE++H W GNLVT + W H WLNEG ++ LF E ++ +
Sbjct: 288 SLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 347
Query: 355 TEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSL 411
+ E+HP V +ID + ++ Y KG +++ L+ LG E F L
Sbjct: 348 ELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFL 407
Query: 412 ASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 456
+Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 408 KAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 456
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 199/469 (42%), Gaps = 60/469 (12%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 19 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 78
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 79 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 123
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKIT----LDVPSELVALSNMPVI-----DEK 176
+G++ +Q + R PC D P+ K+T + VP ELVAL M I +
Sbjct: 124 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 181
Query: 177 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 236
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 182 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 237
Query: 237 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 295
L++ E PY + D++ +P F G MEN L T L A +
Sbjct: 238 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDK 287
Query: 296 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDEC 354
++ V+AHE++H W GNLVT + W H WLNEG ++ LF E ++ +
Sbjct: 288 SLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 347
Query: 355 TEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSL 411
+ E+HP V +ID + ++ Y KG +++ L+ LG E F L
Sbjct: 348 ELQNSVKTFGETHPFTKLVVDLTDIDPNVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFL 407
Query: 412 ASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 456
+Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 408 KAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 456
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 116/475 (24%), Positives = 199/475 (41%), Gaps = 72/475 (15%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 20 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 79
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 80 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 124
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKIT----LDVPSELVALSNMPVI-----DEK 176
+G++ +Q + R PC D P+ K+T + VP ELVAL M I +
Sbjct: 125 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 182
Query: 177 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 236
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 183 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 238
Query: 237 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 295
L++ E PY + D++ +P F G MEN L T L A +
Sbjct: 239 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDK 288
Query: 296 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWT 348
++ V+AHE++H W GNLVT + W H WLNEG ++ LF E W
Sbjct: 289 SLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 348
Query: 349 QFLDECTEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-E 405
+ + + E+HP V +ID + ++ Y KG +++ L+ LG E
Sbjct: 349 ELQNS------VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPE 402
Query: 406 CFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 456
F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 403 IFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 457
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 114/469 (24%), Positives = 199/469 (42%), Gaps = 60/469 (12%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 25 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 84
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 85 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 129
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKIT----LDVPSELVALSNMPVI-----DEK 176
+G++ +Q + R PC D P+ K+T + VP ELVAL M I +
Sbjct: 130 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 187
Query: 177 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 236
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 188 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 243
Query: 237 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 295
L++ E PY + D++ +P F G MEN L T L A +
Sbjct: 244 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDK 293
Query: 296 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDEC 354
++ V+AH+++H W GNLVT + W H WLNEG ++ LF E ++ +
Sbjct: 294 SLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 353
Query: 355 TEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSL 411
+ E+HP V +ID + ++ Y KG +++ L+ LG E F L
Sbjct: 354 ELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFL 413
Query: 412 ASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 456
+Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 414 KAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 462
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 115/475 (24%), Positives = 199/475 (41%), Gaps = 72/475 (15%)
Query: 17 KRYDIRLTPDLTSCKFGGSVAIDVDVVGDT-KFIVLNAADLTI-----NNRSVSFT-NKV 69
K +R + D T G+ A+ V D + +VL+ DLTI N + V + +
Sbjct: 20 KHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGER 79
Query: 70 SSKALEPTKVEL---VEADEILVLEFA-ETLPTGMGVLAIGFEGVLNDKMKGFYRSSYEL 125
S P ++ L + ++ +V+E + ET P + + E +
Sbjct: 80 QSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPE---------------QT 124
Query: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKIT----LDVPSELVALSNMPVI-----DEK 176
+G++ +Q + R PC D P+ K+T + VP ELVAL M I +
Sbjct: 125 SGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDP 182
Query: 177 VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 236
D + K + + + YL+A+V+G + + G + V+ + + + + +
Sbjct: 183 EDPSRKIYKFIQKVPIPCYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSET 238
Query: 237 VKTLELYKEYFAVPYSLPKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQ 295
L++ E PY + D++ +P F G M+N L T L A +
Sbjct: 239 ESMLKI-AEDLGGPYVWGQYDLLVLPPSFPYGGMQNPCLTFVTPTLL---------AGDK 288
Query: 296 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWT 348
++ V+AHE++H W GNLVT + W H WLNEG ++ LF E W
Sbjct: 289 SLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWG 348
Query: 349 QFLDECTEGLRLDGLAESHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-E 405
+ + + E+HP V +ID + ++ Y KG +++ L+ LG E
Sbjct: 349 ELQNS------VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPE 402
Query: 406 CFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVI 456
F L +Y++K++ + T+D L + V+ L N+W G P I
Sbjct: 403 IFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 457
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 122/279 (43%), Gaps = 10/279 (3%)
Query: 184 VSYQESPIMSTYLVAVVIGLFDYVED----HTSDGIKVRVYCQVGKANQGKFALNVAVKT 239
V +Q+ YL A+V G FD + D + + + +Y G ++ +A+ +
Sbjct: 174 VQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNS 233
Query: 240 LELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVAT 299
++ +E F + Y L ++A+ F GAMEN GL + +L + + +
Sbjct: 234 MKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIER 293
Query: 300 VVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLR 359
V+ HE H W GN VT W L L EG + + L + GL+
Sbjct: 294 VIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNV-RTMRGLQ 352
Query: 360 L--DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKK 417
D +HPI ++ E++ + Y KGA VIRM+ LG E FQ+ + Y ++
Sbjct: 353 FAEDASPMAHPIRPDM--VIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFER 410
Query: 418 YACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVI 456
+ S A +D A+E+ S ++ W Q G P++
Sbjct: 411 HDGSAATCDDFVQAMEDASNVDLSHF-RRWYSQSGTPIV 448
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 122/279 (43%), Gaps = 10/279 (3%)
Query: 184 VSYQESPIMSTYLVAVVIGLFDYVED----HTSDGIKVRVYCQVGKANQGKFALNVAVKT 239
V +Q+ YL A+V G FD + D + + + +Y G ++ +A+ +
Sbjct: 195 VQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNS 254
Query: 240 LELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVAT 299
++ +E F + Y L ++A+ F GAMEN GL + +L + + +
Sbjct: 255 MKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIER 314
Query: 300 VVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLR 359
V+ HE H W GN VT W L L EG + + L + GL+
Sbjct: 315 VIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNV-RTMRGLQ 373
Query: 360 L--DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKK 417
D +HPI ++ E++ + Y KGA VIRM+ LG E FQ+ + Y ++
Sbjct: 374 FAEDASPMAHPIRPDM--VIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFER 431
Query: 418 YACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVI 456
+ S A +D A+E+ S ++ W Q G P++
Sbjct: 432 HDGSAATCDDFVQAMEDASNVDLSHF-RRWYSQSGTPIV 469
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 122/279 (43%), Gaps = 10/279 (3%)
Query: 184 VSYQESPIMSTYLVAVVIGLFDYVED----HTSDGIKVRVYCQVGKANQGKFALNVAVKT 239
V +Q+ YL A+V G FD + D + + + +Y G ++ +A+ +
Sbjct: 195 VQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNS 254
Query: 240 LELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVAT 299
++ +E F + Y L ++A+ F GAMEN GL + +L + + +
Sbjct: 255 MKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIER 314
Query: 300 VVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLR 359
V+ HE H W GN VT W L L EG + + L + GL+
Sbjct: 315 VIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNV-RTMRGLQ 373
Query: 360 L--DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKK 417
D +HPI ++ E++ + Y KGA VIRM+ LG E FQ+ + Y ++
Sbjct: 374 FAEDASPMAHPIRPDM--VIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFER 431
Query: 418 YACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVI 456
+ S A +D A+E+ S ++ W Q G P++
Sbjct: 432 HDGSAATCDDFVQAMEDASNVDLSHF-RRWYSQSGTPIV 469
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 105/452 (23%), Positives = 180/452 (39%), Gaps = 45/452 (9%)
Query: 21 IRLTPDLTSCKFGGSVAIDVDVVGDTKF-IVLNAADLTINNRSVSFTNKVSSKALEPTKV 79
+ L D G + +D D K ++L+ DL I+ K S
Sbjct: 33 LDLNVDFDKKSLSGFAELSLDWFTDNKAPLILDTRDLVIHR----VMAKNSQGQWVKVNY 88
Query: 80 ELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGF-YRSSYELNGEKKNMAVTQFE 138
+L + D++L + P + + + +K G + S+ + G++K +Q +
Sbjct: 89 DLAKRDDVLGSKLTINTPLNAKKVRVYYNST--EKATGLQWLSAEQTAGKEKPFLFSQNQ 146
Query: 139 PADARRCFPCWDEPACKIT----LDVPSELVAL---SNMPVIDEKVDGNMKTVSYQESPI 191
AR P D P+ ++T + +L+A+ +N P + DG+ Q P
Sbjct: 147 AIHARSWIPIQDTPSVRVTYTARITTDKDLLAVMSANNEPGTER--DGDYFFSMPQAIP- 203
Query: 192 MSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPY 251
YL+A+ +G ++ GI Y + + K ++Y +Y Y
Sbjct: 204 --PYLIAIGVGDLEFKAMSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYGKYRWGRY 261
Query: 252 SLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 311
L ++ P F G MEN L T + A + + ++AHELAH W G
Sbjct: 262 DL----LMLPPSFPFGGMENPRLSFITPTVV---------AGDKSLVNLIAHELAHSWSG 308
Query: 312 NLVTMEWWTHLWLNEGFATWVSYLAADSLF-PEWKIWTQFL---DECTEGLRLDGLAESH 367
NLVT E W LWLNEGF ++V +++F + + Q L D E L LD
Sbjct: 309 NLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQDLNAEILELDASDTQL 368
Query: 368 PIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTED 427
I+++ + D+ F + Y KG + L+ G E F + Y +A + T++
Sbjct: 369 YIDLK---GRDPDDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQSLGTDN 425
Query: 428 LWAALEEGSGEPVNKL-----MNSWTKQKGYP 454
L+ + + +N W + G P
Sbjct: 426 FVKYLKANLTDKYPNIVSDNEINEWIFKAGLP 457
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 127/313 (40%), Gaps = 40/313 (12%)
Query: 130 KNMAVTQFEPADARRCFPCWDEPACK--ITLDVPSEL-VALSNMPVIDEKVDGNMKTVSY 186
K +Q E AR FPC+D P+ K T + S L V S + + D D N+
Sbjct: 139 KPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESPLPVVFSGIRIEDTSKDTNIYRFE- 197
Query: 187 QESPIMSTYLVAVVIGLFDYVEDHTSDGIKVR--VYCQVGKANQGKFALNVAVKTLELYK 244
Q+ PI YL+ + G D +S I R VY + + ++ V+
Sbjct: 198 QKVPI-PAYLIGIASG------DLSSAPIGPRSTVYTEPFRLKDCQWEFENDVEKFIQTA 250
Query: 245 EYFAVPYSLPKLD-MIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAH 303
E Y D ++ + + G ME+ + T L +D + V+AH
Sbjct: 251 EKIIFEYEWGTYDILVNVDSYPYGGMESPNMTFATPTLLAHDRSN---------IDVIAH 301
Query: 304 ELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE----------WKIWTQFLDE 353
ELAH W GNLVT W H WLNEG+ ++ ++ E W +D
Sbjct: 302 ELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNSIDS 361
Query: 354 CTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAEC-FQRSLA 412
+ R L ++ +N + D+ F + Y KG +++ L+ LG + F +
Sbjct: 362 MKDPERFSTLVQN------LNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIR 415
Query: 413 SYIKKYACSNAKT 425
Y KK+A + T
Sbjct: 416 HYFKKFAKKSLDT 428
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 127/313 (40%), Gaps = 40/313 (12%)
Query: 130 KNMAVTQFEPADARRCFPCWDEPACK--ITLDVPSEL-VALSNMPVIDEKVDGNMKTVSY 186
K +Q E AR FPC+D P+ K T + S L V S + + D D N+
Sbjct: 139 KPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESPLPVVFSGIRIEDTSKDTNIYRFE- 197
Query: 187 QESPIMSTYLVAVVIGLFDYVEDHTSDGIKVR--VYCQVGKANQGKFALNVAVKTLELYK 244
Q+ PI YL+ + G D +S I R VY + + ++ V+
Sbjct: 198 QKVPI-PAYLIGIASG------DLSSAPIGPRSTVYTEPFRLKDCQWEFENDVEKFIQTA 250
Query: 245 EYFAVPYSLPKLD-MIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAH 303
E Y D ++ + + G ME+ + T + +D + V+AH
Sbjct: 251 EKIIFEYEWGTYDILVNVDSYPYGGMESPNMTFATPTLIAHDRSN---------IDVIAH 301
Query: 304 ELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPE----------WKIWTQFLDE 353
ELAH W GNLVT W H WLNEG+ ++ ++ E W +D
Sbjct: 302 ELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNSIDS 361
Query: 354 CTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAEC-FQRSLA 412
+ R L ++ +N + D+ F + Y KG +++ L+ LG + F +
Sbjct: 362 MKDPERFSTLVQN------LNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIR 415
Query: 413 SYIKKYACSNAKT 425
Y KK+A + T
Sbjct: 416 HYFKKFAKKSLDT 428
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 145/365 (39%), Gaps = 39/365 (10%)
Query: 112 NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEP------ACKITLDVPSELV 165
N + G Y S L TQ EP R+ D P I D V
Sbjct: 99 NKSLXGLYASGGNL--------FTQCEPEGFRKITFYIDRPDVXSKFTTTIVADKKRYPV 150
Query: 166 ALSNMPVID--EKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH--TSDGIKVRVYC 221
LSN ID E DG V +++ +YL A+V G ED+ T G V++
Sbjct: 151 LLSNGNKIDGGEFSDGR-HWVKWEDPFSKPSYLFALVAGDLAVTEDYFTTXSGRNVKIEF 209
Query: 222 QVGKANQGKFALNV-AVKTLELYKE-YFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRE 279
+A++ K V ++K + E F + Y L ++A+ DF GA EN GL +
Sbjct: 210 YTTEADKPKVGFAVESLKNAXKWDETRFGLEYDLDIFXVVAVGDFNXGAXENKGLNIFNT 269
Query: 280 TALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 339
+L D + + + + + +VV HE H W GN VT W L L EG + D
Sbjct: 270 KFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVF-----RDQ 324
Query: 340 LFPEWKIWTQFLDECTEGLRL--------DGLAESHPIEVEVNHTGEIDEIFDAISYRKG 391
F + E +RL D +HP+ E + + Y KG
Sbjct: 325 EFSGDRASRAV--RRIENIRLLRQHQFPEDAGPTAHPVRPASYE--EXNNFYTXTVYEKG 380
Query: 392 ASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQK 451
A V+R LG E FQ+ Y +++ +D AA + +G +++ W Q
Sbjct: 381 AEVVRXYHTLLGEEGFQKGXKLYFQRHDGQAVTCDDFRAAXADANGINLDQFA-LWYSQA 439
Query: 452 GYPVI 456
G PV+
Sbjct: 440 GTPVL 444
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 172/396 (43%), Gaps = 46/396 (11%)
Query: 476 GSPGDGQ-WIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVN 534
G+P G W VP+T D+ FLL K+D + E + WIK NV
Sbjct: 27 GAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEEVE-----------WIKFNVG 75
Query: 535 QTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDHFALCMARQQTLTSLLTLMAS 592
G+Y V Y+ D L ++ +S DR ++++ F L + ++ L L
Sbjct: 76 MNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLY 135
Query: 593 YSEETE----YTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKP 648
ETE + L+ LI + YK+ + E+ K F I L ++ +K W +
Sbjct: 136 LKHETEIMPVFQGLNELIPM-YKL--MEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEG 192
Query: 649 GESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQK 708
S + +LR ++ + ++ + A F + LP D+ A +
Sbjct: 193 SVS--ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFA----- 245
Query: 709 VSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLL-----SSEVRS 763
V A G++ L Y+ + S EK++I A C N E L +LL ++++
Sbjct: 246 VGAQSTEGWDFLYSKYQFSLSSTEKSQI--EFALCRTQNK--EKLQWLLDESFKGDKIKT 301
Query: 764 QDAVYGLAVSIEGRE-----TAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEK 817
Q+ + +++ GR AW++L+ NW+ + + + G I + + F++ +
Sbjct: 302 QE--FPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTR 359
Query: 818 VREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 852
+ EV+ FFSS + R ++Q+IE ++ N W++
Sbjct: 360 LEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMD 395
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 724 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 777
Y E D S +IL ++ C + +V L+ N LL+S+++ + A +GLA+ +EG
Sbjct: 118 YSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGE 177
Query: 778 ETAW 781
+ AW
Sbjct: 178 QQAW 181
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 724 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 777
Y E D S +IL ++ C + +V L+ N LL+S+++ + A +GLA+ +EG
Sbjct: 107 YSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGE 166
Query: 778 ETAW 781
+ AW
Sbjct: 167 QQAW 170
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 724 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 777
Y E D S +IL ++ C + +V L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 100 YSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGD 159
Query: 778 ETAW 781
+ AW
Sbjct: 160 QQAW 163
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 724 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 777
Y E D S +IL S+ C IV L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 100 YSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGD 159
Query: 778 ETAW 781
+ AW
Sbjct: 160 QQAW 163
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 724 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 777
Y E D S +IL S+ C IV L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 100 YSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGD 159
Query: 778 ETAW 781
+ AW
Sbjct: 160 QQAW 163
>pdb|1WNI|A Chain A, Crystal Structure Of H2-Proteinase
Length = 201
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 209 DHTSDGIKVRVYCQVGKANQGKFALNVAV--KTLELYKEYFAVPYSLPKLDMIAIPDFAA 266
+ SD IKVRV+ V N+ LN+A+ L+++ K D+I + +
Sbjct: 23 NQNSDKIKVRVHQMVNHINEMYRPLNIAISLNRLQIWS----------KKDLITVKSASN 72
Query: 267 GAMENYGLVTYRETALLYDDQHSAA 291
+E++G +RET LL + A
Sbjct: 73 VTLESFG--NWRETVLLKQQNNDCA 95
>pdb|3SK1|A Chain A, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK1|B Chain B, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK1|C Chain C, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK1|D Chain D, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK2|A Chain A, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087 In Complex With Griseoluteic
Acid
pdb|3SK2|B Chain B, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087 In Complex With Griseoluteic
Acid
Length = 132
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 436 SGEPVNKLMNSWTKQKGYPVI 456
+GE V+KL N WTKQK + +I
Sbjct: 82 TGEDVDKLFNEWTKQKSHQII 102
>pdb|3C2R|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
pdb|3C2R|B Chain B, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
Length = 295
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 335 LAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISY 388
+ A SL +W FL EC+ GL LD L E ++++ T I + I +
Sbjct: 236 MCAQSLKNKWNGKKHFLLECSGGLNLDNLEEYLCDDIDIYSTSSIHQGTPVIDF 289
>pdb|3C2E|A Chain A, Crystal Structure At 1.9a Of The Apo Quinolinate
Phosphoribosyl Transferase (Bna6) From Saccharomyces
Cerevisiae
pdb|3C2O|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With Quinolinate
pdb|3C2F|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp
pdb|3C2V|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp And The Inhibitor Phthalate
Length = 294
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 335 LAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISY 388
+ A SL +W FL EC+ GL LD L E ++++ T I + I +
Sbjct: 235 MCAQSLKNKWNGKKHFLLECSGGLNLDNLEEYLCDDIDIYSTSSIHQGTPVIDF 288
>pdb|1R8W|A Chain A, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R8W|B Chain B, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|A Chain A, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|B Chain B, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9E|A Chain A, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
pdb|1R9E|B Chain B, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
Length = 787
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 761 VRSQDAVYGLAVSIEGR------ETAWKWLKDNWDHISKTWGSGFLITRFISSIVSPFAS 814
+R Q+ + G +++ E R E + KWL+D D ++K G F I+ S
Sbjct: 66 IRDQELIVG-SLTKEPRSSQVFPEFSNKWLQDELDRLNKRTGDAFQISE---------ES 115
Query: 815 YEKVREVEEFFSSRCKPYIARTLRQSIERVQIN 847
EK+++V E+++ + +A + R +N
Sbjct: 116 KEKLKDVFEYWNGKTTSELATSYMTEETREAVN 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,098,621
Number of Sequences: 62578
Number of extensions: 1024531
Number of successful extensions: 2632
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2470
Number of HSP's gapped (non-prelim): 57
length of query: 872
length of database: 14,973,337
effective HSP length: 107
effective length of query: 765
effective length of database: 8,277,491
effective search space: 6332280615
effective search space used: 6332280615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)