Query 002864
Match_columns 872
No_of_seqs 313 out of 2407
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 12:20:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046 Puromycin-sensitive am 100.0 4E-146 8E-151 1309.7 82.3 842 4-868 25-881 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 4E-121 9E-126 1097.1 82.4 791 13-852 13-830 (831)
3 COG0308 PepN Aminopeptidase N 100.0 3.8E-89 8.2E-94 819.1 66.4 813 9-855 12-857 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 6.2E-81 1.3E-85 736.9 72.8 700 11-755 4-762 (863)
5 PRK14015 pepN aminopeptidase N 100.0 2.5E-80 5.5E-85 734.2 75.5 701 11-752 16-772 (875)
6 TIGR02411 leuko_A4_hydro leuko 100.0 4.2E-73 9E-78 654.6 39.3 423 9-461 6-453 (601)
7 PF01433 Peptidase_M1: Peptida 100.0 7.9E-71 1.7E-75 619.9 35.9 381 9-391 1-390 (390)
8 KOG1047 Bifunctional leukotrie 100.0 1.7E-52 3.7E-57 443.2 27.1 426 11-459 13-460 (613)
9 PF11838 ERAP1_C: ERAP1-like C 100.0 2.6E-50 5.6E-55 441.8 28.8 313 528-845 1-324 (324)
10 KOG1932 TATA binding protein a 100.0 1.4E-34 3E-39 328.5 34.5 424 16-461 27-506 (1180)
11 COG3975 Predicted protease wit 99.2 3.8E-10 8.2E-15 121.8 18.0 237 227-471 181-447 (558)
12 PF13485 Peptidase_MA_2: Pepti 99.1 7E-11 1.5E-15 110.2 6.7 106 295-414 23-128 (128)
13 PF10460 Peptidase_M30: Peptid 97.6 0.0027 5.8E-08 68.3 17.7 143 294-451 136-285 (366)
14 PF05299 Peptidase_M61: M61 gl 97.0 0.00037 7.9E-09 62.8 2.6 43 297-339 4-57 (122)
15 PF11940 DUF3458: Domain of un 96.7 0.096 2.1E-06 57.4 18.1 303 464-798 6-344 (367)
16 PF07607 DUF1570: Protein of u 95.9 0.005 1.1E-07 56.2 2.5 39 299-337 3-43 (128)
17 PF04450 BSP: Peptidase of pla 94.7 0.41 9E-06 47.9 12.0 111 294-446 93-204 (205)
18 PF10026 DUF2268: Predicted Zn 92.3 0.45 9.7E-06 47.6 7.6 103 235-344 4-117 (195)
19 COG4324 Predicted aminopeptida 91.6 0.78 1.7E-05 46.1 8.0 114 221-340 72-234 (376)
20 PF10023 DUF2265: Predicted am 88.8 2.1 4.5E-05 45.9 9.0 115 220-340 39-202 (337)
21 smart00638 LPD_N Lipoprotein N 88.7 7 0.00015 46.5 14.6 197 546-759 357-560 (574)
22 PRK04860 hypothetical protein; 87.7 1.2 2.5E-05 42.7 5.8 70 232-310 5-76 (160)
23 PF01863 DUF45: Protein of unk 83.4 6 0.00013 39.8 9.0 92 231-349 109-200 (205)
24 smart00731 SprT SprT homologue 80.6 1.9 4.1E-05 40.8 3.9 17 295-311 57-73 (146)
25 PF01347 Vitellogenin_N: Lipop 73.6 36 0.00077 40.9 13.0 195 546-757 395-602 (618)
26 PF03272 Enhancin: Viral enhan 73.3 2.1E+02 0.0046 35.1 19.1 129 299-447 238-377 (775)
27 PF12725 DUF3810: Protein of u 72.2 4.3 9.3E-05 43.9 4.2 31 297-339 196-226 (318)
28 COG3227 LasB Zinc metalloprote 69.8 4.7 0.0001 44.6 3.8 109 223-338 265-379 (507)
29 PF01447 Peptidase_M4: Thermol 63.3 9.5 0.00021 36.2 4.0 27 227-254 67-93 (150)
30 PF12315 DUF3633: Protein of u 63.2 11 0.00024 37.2 4.6 41 297-339 93-133 (212)
31 COG4783 Putative Zn-dependent 61.8 7.7 0.00017 43.2 3.6 53 252-309 90-142 (484)
32 COG1451 Predicted metal-depend 55.2 66 0.0014 32.8 8.8 93 230-349 119-211 (223)
33 PF04234 CopC: CopC domain; I 55.2 62 0.0013 28.1 7.5 62 45-109 18-82 (97)
34 PF10263 SprT-like: SprT-like 54.2 19 0.00041 34.4 4.6 18 294-311 57-74 (157)
35 PF06114 DUF955: Domain of unk 53.8 12 0.00027 33.4 3.1 18 297-314 42-59 (122)
36 PF10989 DUF2808: Protein of u 53.6 39 0.00084 31.9 6.5 47 72-120 75-122 (146)
37 PRK04351 hypothetical protein; 51.9 14 0.0003 35.0 3.0 15 294-308 58-72 (149)
38 PF13646 HEAT_2: HEAT repeats; 50.3 29 0.00063 29.0 4.7 75 655-741 14-88 (88)
39 KOG1991 Nuclear transport rece 48.3 2.6E+02 0.0057 34.5 13.3 137 561-699 102-252 (1010)
40 PF01435 Peptidase_M48: Peptid 48.1 24 0.00052 35.9 4.5 70 238-316 35-108 (226)
41 COG2719 SpoVR Uncharacterized 46.8 1.3E+02 0.0029 33.3 9.7 51 299-355 251-301 (495)
42 PF08325 WLM: WLM domain; Int 42.6 87 0.0019 30.9 7.1 22 292-313 77-98 (186)
43 COG0362 Gnd 6-phosphogluconate 40.7 1.6E+02 0.0035 32.5 9.1 117 562-699 312-443 (473)
44 COG0501 HtpX Zn-dependent prot 40.4 40 0.00087 36.1 5.0 68 240-315 105-175 (302)
45 COG3091 SprT Zn-dependent meta 40.3 42 0.00091 31.4 4.1 67 235-308 6-72 (156)
46 PRK03982 heat shock protein Ht 40.2 49 0.0011 35.3 5.5 66 236-312 70-140 (288)
47 cd04269 ZnMc_adamalysin_II_lik 39.6 85 0.0018 31.1 6.8 14 296-309 130-143 (194)
48 PF04597 Ribophorin_I: Ribopho 38.6 2.8E+02 0.0061 31.5 11.4 86 24-109 10-103 (432)
49 PF13699 DUF4157: Domain of un 38.5 31 0.00067 28.7 2.8 67 238-309 5-73 (79)
50 COG2372 CopC Uncharacterized p 38.3 92 0.002 28.4 5.9 60 47-109 47-110 (127)
51 PF08014 DUF1704: Domain of un 37.8 1.4E+02 0.003 32.8 8.5 83 239-336 118-213 (349)
52 cd04279 ZnMc_MMP_like_1 Zinc-d 37.5 1.1E+02 0.0025 29.0 7.1 35 215-249 2-39 (156)
53 PRK01345 heat shock protein Ht 37.0 68 0.0015 34.8 5.9 68 236-312 69-139 (317)
54 PRK02870 heat shock protein Ht 36.9 62 0.0013 35.3 5.6 63 238-308 119-184 (336)
55 PHA02456 zinc metallopeptidase 36.4 24 0.00051 30.7 1.8 15 296-310 78-92 (141)
56 PRK04897 heat shock protein Ht 35.9 49 0.0011 35.5 4.6 68 236-312 82-152 (298)
57 PRK05457 heat shock protein Ht 35.9 52 0.0011 35.0 4.8 68 236-312 79-149 (284)
58 PRK03072 heat shock protein Ht 35.8 68 0.0015 34.2 5.6 69 235-312 71-142 (288)
59 PF13574 Reprolysin_2: Metallo 35.4 24 0.00052 34.4 2.0 13 297-309 111-123 (173)
60 PRK03001 M48 family peptidase; 34.7 58 0.0013 34.6 5.0 67 236-311 69-138 (283)
61 PF14675 FANCI_S1: FANCI solen 34.2 1.2E+02 0.0025 31.0 6.7 117 564-684 4-123 (223)
62 PF12174 RST: RCD1-SRO-TAF4 (R 34.0 84 0.0018 25.5 4.5 47 391-438 11-57 (70)
63 PF10805 DUF2730: Protein of u 30.4 2.2E+02 0.0047 25.2 7.0 43 780-824 1-43 (106)
64 PRK02391 heat shock protein Ht 30.2 90 0.0019 33.4 5.4 68 236-312 78-148 (296)
65 KOG1077 Vesicle coat complex A 30.1 2.7E+02 0.0059 33.0 9.2 27 586-612 261-287 (938)
66 PF01431 Peptidase_M13: Peptid 29.4 58 0.0013 32.7 3.7 31 284-314 23-53 (206)
67 PRK10301 hypothetical protein; 28.7 3.1E+02 0.0068 25.0 7.9 26 84-109 84-109 (124)
68 PF07539 DRIM: Down-regulated 28.4 3E+02 0.0065 25.8 8.0 60 691-758 79-139 (141)
69 PRK09687 putative lyase; Provi 28.3 7.3E+02 0.016 26.2 15.4 42 713-755 190-231 (280)
70 PRK01265 heat shock protein Ht 28.2 1E+02 0.0022 33.5 5.4 66 237-311 86-154 (324)
71 COG2856 Predicted Zn peptidase 27.8 1.6E+02 0.0035 29.7 6.4 40 296-335 71-115 (213)
72 PRK15245 type III effector pho 26.5 1.5E+02 0.0032 29.3 5.5 103 155-280 104-215 (241)
73 PF09768 Peptidase_M76: Peptid 25.5 2.1E+02 0.0045 27.9 6.4 26 293-318 67-92 (173)
74 cd04272 ZnMc_salivary_gland_MP 25.5 1.5E+02 0.0032 30.2 5.9 13 297-309 145-157 (220)
75 PF09836 DUF2063: Uncharacteri 25.3 40 0.00088 29.0 1.5 31 397-427 54-84 (94)
76 PF01421 Reprolysin: Reprolysi 23.5 1E+02 0.0022 30.7 4.3 14 295-308 129-142 (199)
77 PF14524 Wzt_C: Wzt C-terminal 22.9 1.7E+02 0.0038 26.7 5.5 25 83-107 83-107 (142)
78 KOG2661 Peptidase family M48 [ 22.6 92 0.002 33.1 3.6 21 293-313 271-291 (424)
79 PF03715 Noc2: Noc2p family; 21.3 2E+02 0.0043 30.8 6.1 49 819-867 228-284 (299)
80 PF12069 DUF3549: Protein of u 20.7 4.1E+02 0.0089 28.9 8.1 95 660-765 171-266 (340)
81 smart00675 DM11 Domains in hyp 20.1 7.9E+02 0.017 23.7 10.3 38 21-59 35-72 (164)
No 1
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-146 Score=1309.71 Aligned_cols=842 Identities=48% Similarity=0.779 Sum_probs=773.9
Q ss_pred cCCCCcCCCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCceeeEEEEEeccCCCCccccCeeEEEec
Q 002864 4 FKGQPRLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVE 83 (872)
Q Consensus 4 ~~~~~rLp~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~ 83 (872)
+...+|||++++|+||+|.|.+++....|.|++.|.+.+.++++.|+||+.++.|.++.+....................
T Consensus 25 ~~~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (882)
T KOG1046|consen 25 FPNEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEKEQ 104 (882)
T ss_pred ccccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCccccccccccccc
Confidence 34678999999999999999999999999999999999999999999999999999999865322111111111111111
Q ss_pred CCeEEEEEeCCCcCCc-eEEEEEEEEeeecCCCcceEEeeecc-CCeeecccccCCCcccccccccccCCCCce----EE
Q 002864 84 ADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL-NGEKKNMAVTQFEPADARRCFPCWDEPACK----IT 157 (872)
Q Consensus 84 ~~~~l~i~l~~~L~~g-~~~L~i~y~g~~~~~~~G~~~~~y~~-~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~k----l~ 157 (872)
. +.+.+.+++++.+| +|+|+|.|.|.+++++.|||++.|.+ ++.++++++|||||++||++|||||||++| |+
T Consensus 105 ~-~~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~It 183 (882)
T KOG1046|consen 105 E-ETLVFPLNETLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTIT 183 (882)
T ss_pred c-eEEEEEcccccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEEE
Confidence 1 68889999999999 89999999999999999999999987 466689999999999999999999999999 99
Q ss_pred EEecCCCeeeecCcccce-eecCCeEEEEEecCCCccceeeEEEEeeeeEeeccccCCeEEEEEEcCCchhhHHHHHHHH
Q 002864 158 LDVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 236 (872)
Q Consensus 158 i~~p~~~~~~sng~~~~~-~~~~~~~~~~f~~t~~~~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~~ 236 (872)
|.||++++|+|||++..+ ..++++++++|+.||+||+|++||+||+|++.+..+.+|+++++|++|+...+++++++.+
T Consensus 184 l~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~ 263 (882)
T KOG1046|consen 184 LVHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVA 263 (882)
T ss_pred EEecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHHH
Confidence 999999999999999876 4555699999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHHhcCcccc
Q 002864 237 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 316 (872)
Q Consensus 237 ~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~vt~ 316 (872)
.++|++|+++||+|||++|+|+|++|+|..|||||||||+|++..+|+++..++..++++++.+||||+|||||||+|||
T Consensus 264 ~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm 343 (882)
T KOG1046|consen 264 TKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTM 343 (882)
T ss_pred HHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhhHHHHHHHHHHHhhhCcchhhHHHHHHHHH-HhhhccccCCCCceeeecCCchhhhhcccceeechhhHHH
Q 002864 317 EWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 395 (872)
Q Consensus 317 ~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kga~vl 395 (872)
+||+|+|||||||+|+++++++..+|+|..+++++.+.. .++..|+..++||+..++.++.++++.|+.++|.||++||
T Consensus 344 ~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvl 423 (882)
T KOG1046|consen 344 KWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVL 423 (882)
T ss_pred hhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHH
Confidence 999999999999999999999999999999999887776 5799999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCcHHHHHHHhhcCCCcceEEEEEeCcEEEEEEEeeccC
Q 002864 396 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLSS 475 (872)
Q Consensus 396 ~mL~~~lG~~~F~~~lr~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~~~i~l~Q~rf~~~ 475 (872)
|||+.++|++.|++||+.|+.+|+|+|++++|||++|+...+.+++++|+.|+.|+|||+|+|.+++++++++|+||...
T Consensus 424 RML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~~ 503 (882)
T KOG1046|consen 424 RMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQERFLSD 503 (882)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCCEEEEehhhhccC
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred CC--CCCCeeEEEEEEEECcccceeeEEeeccceEEEecccccccccCCCCCCceEEecCCceeEEEEEcCHHHHHHHHH
Q 002864 476 GS--PGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGY 553 (872)
Q Consensus 476 ~~--~~~~~w~iPi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~ 553 (872)
.. ..+..|+|||+|.+...+.....|+..++..+.++. .+ +||++|.++.|||||+||.++|+.|++
T Consensus 504 ~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~--~wi~~N~~~~g~yRV~Yd~~~w~~l~~ 572 (882)
T KOG1046|consen 504 PDPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------SD--QWIKVNLEQTGYYRVNYDDENWALLIE 572 (882)
T ss_pred CCccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------CC--eEEEEeCCcceEEEEEeCHHHHHHHHH
Confidence 64 334599999999987655445678888877777764 33 699999999999999999999999999
Q ss_pred HHHc-CCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Q 002864 554 AIEM-KQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFI 632 (872)
Q Consensus 554 ~l~~-~~i~~~~ra~li~D~~~la~~g~l~~~~~l~l~~~l~~e~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 632 (872)
+|.. ..+++.+|++||+|+|+|+++|+++++.+|+++.||.+|++|.||..+...+..+.. +.. .+.+..++.|+.
T Consensus 573 ~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~~~--~~~~~~~~~~~~ 649 (882)
T KOG1046|consen 573 QLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-LED--TEIYSKFKEFVK 649 (882)
T ss_pred HHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-ccc--chHHHHHHHHHH
Confidence 9976 689999999999999999999999999999999999999999999999999988888 444 568999999999
Q ss_pred HHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccC
Q 002864 633 SLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSAS 712 (872)
Q Consensus 633 ~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g 712 (872)
+++.++++++||.....++ ....+|..++..||..|+++|.+.|.++|.+|+.. ++.||+++|.+|||+++ ++|
T Consensus 650 ~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~--~~~ip~~lr~~vy~~~~---~~g 723 (882)
T KOG1046|consen 650 KLILPIFEKLGWSDGADSS-LDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAG--TNPIPPDLREVVYCTAV---QFG 723 (882)
T ss_pred HHHHHHHHHhcCCccccch-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc--CCCCChhhhhhhhhHHH---Hhc
Confidence 9999999999998755444 78899999999999999999999999999999987 78899999998888765 488
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhhc-CcCCcccceeeee-eccc--cHHHHHHHHHHHH
Q 002864 713 DRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLS-SEVRSQDAVYGLA-VSIE--GRETAWKWLKDNW 788 (872)
Q Consensus 713 ~~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d~~~l~~~L~~~l~-~~i~~qd~~~~~~-v~~~--g~~~~~~fl~~n~ 788 (872)
+++.|++++++|+++....||..++.||+|+++++.++++|+..++ ..++.||....+. ++.+ |.+.+|+|+..||
T Consensus 724 ~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~~~~~~~~~~~g~~~a~~~~~~n~ 803 (882)
T KOG1046|consen 724 TEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRLLDLAFDAENVRDQDVLTLLQGISGNPRGVELAWKFLQDNW 803 (882)
T ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHHHHHhcccccccchhHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998887 3599999999988 7766 9999999999999
Q ss_pred HHHHHHhCCCcchHHHHHHhhccCCCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHhh
Q 002864 789 DHISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKELA 868 (872)
Q Consensus 789 ~~i~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~i~~wl~~~~ 868 (872)
+.+.+++++.+.+..++..+++.+.++.+++++++||.........+.+++++|.++.|+.|.+++... +.+||.++.
T Consensus 804 ~~l~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~le~~~~ni~W~~~~~~~--l~~~l~~~~ 881 (882)
T KOG1046|consen 804 KELLNRYGNNFELSRLISFITEPFATEEKLDEVEKFFADIPKTGAERALQQALETVKANIQWVERNEEN--LTQWLLEAL 881 (882)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhHHHhhHHH--HHHHHHHhc
Confidence 999999996688999999999999999999999999998776656899999999999999999999988 999998764
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=4.4e-121 Score=1097.07 Aligned_cols=791 Identities=22% Similarity=0.319 Sum_probs=662.2
Q ss_pred CceeeeEEEEEEecCCCC--eEEEEEEEEEEEECCCCEEEEEecCceeeEEEEEeccCCCCccccCeeEEEecCCeEEEE
Q 002864 13 FAVPKRYDIRLTPDLTSC--KFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (872)
Q Consensus 13 ~v~p~~Y~l~l~~d~~~~--~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (872)
.+.+.||+|.|+++.+.. .+.|+++|+|++.++++.|.||+.+++|.+|.+++. ..+....++ ..|
T Consensus 13 ~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~----------~~~~~~~~~--~~i 80 (831)
T TIGR02412 13 LITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGI----------LDVAPVYDG--SRI 80 (831)
T ss_pred hccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCc----------ccCccccCC--CEE
Confidence 367899999999986544 558999999999888999999999999999999651 111222233 346
Q ss_pred EeCCCcCCceEEEEEEEEeeecCCCcceEEeeeccCCeeecccccCCCcccccccccccCCCCce----EEEEecCCCee
Q 002864 91 EFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACK----ITLDVPSELVA 166 (872)
Q Consensus 91 ~l~~~L~~g~~~L~i~y~g~~~~~~~G~~~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~k----l~i~~p~~~~~ 166 (872)
.++. |++|.++|+|.|.+.+++.+.|+|+..+..+| .++++|||||.+||+||||||+|++| ++|++|++|+|
T Consensus 81 ~l~~-l~~g~~~l~i~~~~~~~~~~~Gl~~~~~~~~g--~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v 157 (831)
T TIGR02412 81 PLPG-LLTGENTLRVEATRAYTNTGEGLHRFVDPVDG--EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTV 157 (831)
T ss_pred EccC-CCCCceEEEEEEEEEecCCCceEEEEEeCCCC--eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceE
Confidence 6665 77888999999999999999999985543344 37789999999999999999999999 99999999999
Q ss_pred eecCcccceeecCCeEEEEEecCCCccceeeEEEEeeeeEeeccccCCeEEEEEEcCCchhh--HHHHHHHHHHHHHHHH
Q 002864 167 LSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQ--GKFALNVAVKTLELYK 244 (872)
Q Consensus 167 ~sng~~~~~~~~~~~~~~~f~~t~~~~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~--~~~~l~~~~~~l~~~e 244 (872)
+|||++......++.++++|+.+||||+|++||++|+|..++. ..+|+++++|++|+..+. ++++++.+.++|++|+
T Consensus 158 ~sNg~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~-~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e 236 (831)
T TIGR02412 158 ISNSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQD-ESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFH 236 (831)
T ss_pred ECCCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEee-cCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999987765556678899999999999999999999999874 456899999999997654 5789999999999999
Q ss_pred HHhCCCCCCCCcceeecCCCCCcccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccccCccchhhh
Q 002864 245 EYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWL 324 (872)
Q Consensus 245 ~~~g~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~vt~~~w~d~WL 324 (872)
++||+|||++|+|+|++|+|..|||||||+|+|++. +++.+. .+...++.+..+|+||+|||||||+|||+||+|+||
T Consensus 237 ~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~-~l~~~~-~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWL 314 (831)
T TIGR02412 237 RKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAE-ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWL 314 (831)
T ss_pred HHhCCCCCcccCCEEEcCCCCCCcccccceeeechh-hccCCc-CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhH
Confidence 999999999999999999999999999999999999 555544 334566788999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhCcchhhHHHHHHHHH-HhhhccccCCCCceeeecCCchhhhhcccceeechhhHHHHHHHHhhC
Q 002864 325 NEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 403 (872)
Q Consensus 325 ~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG 403 (872)
|||||+|++++++++.+|.+..+..|..... .++..|+..++||+..++.++.++...|+.++|.||++||+||+..||
T Consensus 315 nEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lG 394 (831)
T TIGR02412 315 NESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVG 394 (831)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHC
Confidence 9999999999999999999888888876554 668889999999999888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCcHHHHHHHhhcCCCcceEEEEEe--CcEEE-EEEEeeccCCCCCC
Q 002864 404 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVK--EEKLE-LEQSQFLSSGSPGD 480 (872)
Q Consensus 404 ~~~F~~~lr~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~--~~~i~-l~Q~rf~~~~~~~~ 480 (872)
++.|+++||.|+++|+|+|++++|||+++++++|.++++||++|++++|+|+|+|++. ++.+. +.|.+ ++ ..
T Consensus 395 ee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~---~~--~~ 469 (831)
T TIGR02412 395 EEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPES---SG--PP 469 (831)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEec---CC--CC
Confidence 9999999999999999999999999999999999999999999999999999999875 34444 22221 11 12
Q ss_pred CeeEEEEEEEECccccee-----eEEeeccceEEEecccccccccCCCCCCceEEecCCceeEEEEEcCHHHHHHHHHHH
Q 002864 481 GQWIVPITLCCGSYDVCK-----NFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAI 555 (872)
Q Consensus 481 ~~w~iPi~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~l 555 (872)
..|.|||.+....+.... .+++...... ++... ..... +||++|.++.|||||+||+++|+.|.++|
T Consensus 470 ~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~--~~v~~N~~~~gyyrv~yd~~~~~~l~~~l 541 (831)
T TIGR02412 470 RPHRIAIGLYDLDRDDLRRTTLVPLTISGERTA--VPQLV----GKRAP--ALVLLNDDDLTYAKVRLDPTSFDTVLAAL 541 (831)
T ss_pred CCeeEEEeeeecCCCcceeeeEEEEEEecCcee--ehhhc----CCCCC--CEEEEeCCCcEEEEEECCHHHHHHHHHHh
Confidence 469999998654332111 1334332221 22110 01133 79999999999999999999999999998
Q ss_pred HcCCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHH-HhccCCCcHHHHHHHHHHHH-HHHHHHhccChhHHHHHHHHHHH
Q 002864 556 EMKQLSETDRFGILDDHFALCMARQQTLTSLLTLM-ASYSEETEYTVLSNLITISY-KIGRIAADARPELLDYLKQFFIS 633 (872)
Q Consensus 556 ~~~~i~~~~ra~li~D~~~la~~g~l~~~~~l~l~-~~l~~e~~~~~w~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~ 633 (872)
.. ..++.+|++|++|+|+++++|.++++.+|+++ .||++|+++.||..++..+. .+..++.. ++.+..++.++..
T Consensus 542 ~~-~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ 618 (831)
T TIGR02412 542 SK-LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYAP--IADRPALLAVAAL 618 (831)
T ss_pred hh-CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 53 33799999999999999999999999999955 89999999999999999999 88888754 4678889999988
Q ss_pred HHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCC
Q 002864 634 LFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASD 713 (872)
Q Consensus 634 l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~ 713 (872)
++.+.... ++++.+..++. +..++|..|+++|++.++++|+.|+++ ..||||+|..|||+++. ++
T Consensus 619 ~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~dlr~~v~~~~~~----~~ 683 (831)
T TIGR02412 619 ACRSLRRA-------MESGPDFQLRW-LRALALTATDPDSLRRLLSLLDGKIKG---LALDPDLRWRIIARLAA----LG 683 (831)
T ss_pred HHHHHHhc-------cCCCccHHHHH-HHHHHHhcCCHHHHHHHHHHHhCCCCC---cccCHhHHHHHHHHHHh----cC
Confidence 88764322 22323334433 555899999999999999999998754 37999999999986543 57
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhhcC-cCCcccceeeee-eccc-cHHHHHHHHHHHHHH
Q 002864 714 RSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-VSIE-GRETAWKWLKDNWDH 790 (872)
Q Consensus 714 ~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d~~~l~~~L~~~l~~-~i~~qd~~~~~~-v~~~-g~~~~~~fl~~n~~~ 790 (872)
..+|+.++++|++++++.+|..++.||||++|++++++.+..++.+ .++.||...++. ++.. +++++|+|+++||+.
T Consensus 684 ~~~~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (831)
T TIGR02412 684 FIDADDIAAELERDNTASGEEHAAAARAARPDAAAKREAWQKLVTTDALPNSKQRAIIEGFWQPEQALLLAAYAERYFAN 763 (831)
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCCHHHHHHHHhhcCCCCcHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999777777666 489999988888 7655 999999999999999
Q ss_pred HHHHhCC-CcchHHHHHHhhc--cCCCHHHHHHHHHHhhc--CCCchHHHHHHHHHHHHHHHHHHHH
Q 002864 791 ISKTWGS-GFLITRFISSIVS--PFASYEKVREVEEFFSS--RCKPYIARTLRQSIERVQINAKWVE 852 (872)
Q Consensus 791 i~~~~~~-~~~l~~~i~~~~~--~~~t~~~~~~~~~f~~~--~~~~~~~~~~~~~le~i~~ni~W~~ 852 (872)
|.++++. +..+...+...+. .+++++.++++++||+. +..+...|.+.++++.++.|+++++
T Consensus 764 l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~d~~~r~~~~~~ 830 (831)
T TIGR02412 764 LADIWKRRGPAIAQAISRGLFPATAVNYDTLATADKWLRSQADASPGLRRTLLERRDAAERALRARE 830 (831)
T ss_pred HHHHHHhCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhHHHHHHHhhc
Confidence 9999975 4555555554444 89999999999999974 3345889999999999999998875
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-89 Score=819.14 Aligned_cols=813 Identities=30% Similarity=0.469 Sum_probs=653.7
Q ss_pred cCCCCcee-ee--EEEEEEecCC--CCeEEEEEEEEEEE--ECCCCEEEEEecCceeeEEEEEeccCCCCccccCeeEEE
Q 002864 9 RLPKFAVP-KR--YDIRLTPDLT--SCKFGGSVAIDVDV--VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL 81 (872)
Q Consensus 9 rLp~~v~p-~~--Y~l~l~~d~~--~~~~~G~v~I~~~~--~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~ 81 (872)
.++..+.| .+ |++.|+++.. ..+|+|+++|++.. ..+...|+||+.+|+|.++.+++.. ... .+
T Consensus 12 ~~~~~~~~~~~~i~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~------~~~---~~ 82 (859)
T COG0308 12 ALSLDYRPPEYAIYDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKA------LTA---WY 82 (859)
T ss_pred cccccCCCccccccceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCcc------ccc---cc
Confidence 44555556 66 7777765544 58999999999987 3444459999999999999998731 111 22
Q ss_pred ecCCeEEEEEeCCC--c---CCceEEEEEEEEeeec-CCCcceEEeeeccCCeeecccccCCCcccccccccccCCCCce
Q 002864 82 VEADEILVLEFAET--L---PTGMGVLAIGFEGVLN-DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACK 155 (872)
Q Consensus 82 ~~~~~~l~i~l~~~--L---~~g~~~L~i~y~g~~~-~~~~G~~~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~k 155 (872)
..+.+.+.+....+ + .++...+.+.+.+... +.+.|+|++.+.. ..++.||||+.+||+||||+|+|+.|
T Consensus 83 ~~~~~~~~i~~~~~~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~~~----~~~~~TQ~Ea~~aR~~fpc~D~P~~k 158 (859)
T COG0308 83 RLDGDALTITVAPPIPERSERPFTLAITYEFTGPVSNDTLEGLYRSGYGG----KPYLITQCEAEGARRIFPCIDEPDVK 158 (859)
T ss_pred cccCccceeeeccccccccCCCccEEEEEEecccccCccccceeecCCCC----CeeEEeecccCCCceeeecCCCCCCc
Confidence 33334433433222 2 2346778888887776 6788999876543 67889999999999999999999999
Q ss_pred ----EEEEecCCCeeeecCccccee-ecCCeEEEEEecCCCccceeeEEEEeeeeEeecccc---CCeEEEEEEcCCchh
Q 002864 156 ----ITLDVPSELVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTS---DGIKVRVYCQVGKAN 227 (872)
Q Consensus 156 ----l~i~~p~~~~~~sng~~~~~~-~~~~~~~~~f~~t~~~~~yl~a~~vg~f~~~~~~~~---~g~~v~v~~~~~~~~ 227 (872)
++|+.++++.++|||+..... ..+++++++|+.++|||||++|+++|+|.+++.... +++++++|++++...
T Consensus 159 atf~~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~ 238 (859)
T COG0308 159 ATFTLTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLD 238 (859)
T ss_pred ceeEEEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchh
Confidence 999999999999999998773 335689999999999999999999999988875442 479999999999899
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccccccccccccccCCCChHHHHHHHHHHHHHHHHH
Q 002864 228 QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 307 (872)
Q Consensus 228 ~~~~~l~~~~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaH 307 (872)
.++++++.+.+++++|+++||+|||+++ ++|++|+|+.|||||||+++|++.++|.++..++....++++.+|+||+||
T Consensus 239 ~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaH 317 (859)
T COG0308 239 RAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAH 317 (859)
T ss_pred hhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999998878888889999999999999
Q ss_pred HHhcCccccCccchhhhhhHHHHHHHHHHHhhhCc-chhhHHHHHHHHHH-hhhccccCCCCceeeecCCchhhhhcccc
Q 002864 308 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECTE-GLRLDGLAESHPIEVEVNHTGEIDEIFDA 385 (872)
Q Consensus 308 qWfGn~vt~~~w~d~WL~EGfa~y~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~d~~~~~~p~~~~~~~~~~~~~~f~~ 385 (872)
|||||+||++||+++|||||||+|+++...+.++| .|..|..+...... ++..|+...+||+...+.++.++++.||.
T Consensus 318 qWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~ 397 (859)
T COG0308 318 QWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDA 397 (859)
T ss_pred hcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcch
Confidence 99999999999999999999999999999999999 88888887765554 78889999999999999999999999999
Q ss_pred eeechhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCcHHHHHHHhhcCCCcceEEEEEeCc-E
Q 002864 386 ISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEE-K 464 (872)
Q Consensus 386 i~Y~Kga~vl~mL~~~lG~~~F~~~lr~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~~-~ 464 (872)
++|.||++|+|||+.++|++.|+++|+.|+++|++++++++|||+++++++|+++..+|++|++|+|+|++.|+..++ .
T Consensus 398 i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q~G~P~l~v~~~~~~~ 477 (859)
T COG0308 398 IVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQAGYPVLTVSVRYDDF 477 (859)
T ss_pred hhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhCCCCCceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887 7
Q ss_pred EEEEEEeeccCCCCCCCeeEEEEEEEECcccceeeEEeeccceEEEecccccccccCCCCCCceEEecCCceeEEEEEcC
Q 002864 465 LELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYD 544 (872)
Q Consensus 465 i~l~Q~rf~~~~~~~~~~w~iPi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd 544 (872)
++++|.||...+......|.||+.+............+.+...++.+.... ..+- .-+++|....++|++.|+
T Consensus 478 ~~l~~~q~~~~~~~~~~~~~iPl~~~~~~~~~~~~~~~~~~~~t~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~y~ 550 (859)
T COG0308 478 FKLTQKQFTPPGQEEKRPWPIPLAIKLLDGGGVKVLLLTEGEQTVTFELVG-----IPPF--PSLKVNDSAPVFYRVDYS 550 (859)
T ss_pred EEEEEEEeccCCCccCceeeeccEEEecCCCCceeeeeeccceEEEEeccc-----CCcc--ceeeccCCccceEEEecC
Confidence 999999998877334459999999988754432334455555566665421 1111 478899999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcHHH-HHHHHHH-HHHHHHHHhccChh
Q 002864 545 KDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTV-LSNLITI-SYKIGRIAADARPE 622 (872)
Q Consensus 545 ~~~w~~l~~~l~~~~i~~~~ra~li~D~~~la~~g~l~~~~~l~l~~~l~~e~~~~~-w~~~~~~-l~~l~~~~~~~~~~ 622 (872)
.+.|..++.... .++..+|+.++.|..++..+|..+...++..+....++..... -..++.. +..|..... .+
T Consensus 551 ~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 625 (859)
T COG0308 551 DQSLSKLLQHDP--RLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVSLEQAFKSLLLALPSFAD---LE 625 (859)
T ss_pred HHHHHHHHhhhh--hhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccchh---hh
Confidence 999988876643 7889999999999999999999999999987766554444444 3333332 222222211 11
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhh
Q 002864 623 LLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAY 702 (872)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy 702 (872)
..+.......+...+.++++....++.. .......+ ..+|...++.+.+.+..+|.++-.. ...+++++|..+-
T Consensus 626 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 699 (859)
T COG0308 626 --KFIDPDAIDQLRDALVRLGAEAVADDLL-ALYHIGAL-SQSLYEEDASLAALRALRNACLERL--EKQEDPELRSLVV 699 (859)
T ss_pred --hhcCHHHHHHHHHHHHHHHHHhhcchHH-HHHHhhhh-ccccccccHHHHHHHHHHHHHHhhc--ccccChhHHHHHH
Confidence 4555666677777777777765433322 22222222 6778888899999999999988543 3458899998766
Q ss_pred eeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhhcC-cCCcccceeeee-e-cc-ccHH
Q 002864 703 VAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-V-SI-EGRE 778 (872)
Q Consensus 703 ~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d~~~l~~~L~~~l~~-~i~~qd~~~~~~-v-~~-~g~~ 778 (872)
..+..+ .+..+.+..+.+.|..++....+..+..+.+-...+..+.+.|..+..+ .+..|+...... . .. ++++
T Consensus 700 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (859)
T COG0308 700 KAYAAA--GNMTDALKALLEAYQSPTRAEALRDFADAFGRFPLVMDKWFALQAISPGDTVLEQDIGLMIHAAFEAPNPNE 777 (859)
T ss_pred HHHHHh--cChHHHHHHHHHhcccCChHHHHHHHHHHhcccccHHHHHHHHHhcCCCcchHHHHHHHHhhhhhhCCcchh
Confidence 655442 3333468999999998888899999999999999999999999998877 578888877766 3 33 3999
Q ss_pred HHHHHHHHHHH---HHHHHhCCCcchHHHHHHhhccCCCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 002864 779 TAWKWLKDNWD---HISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIR 855 (872)
Q Consensus 779 ~~~~fl~~n~~---~i~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~~~~~le~i~~ni~W~~~~~ 855 (872)
++|.|...||+ .+....+++......+-.....++.+..++++++|++....+...+.+.+++++|....++++..+
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~l~~~~~ 857 (859)
T COG0308 778 ARWLYGTFAFENPALLHALDGSGYRFLGVIVLELNIFNPQLALRKIEEFLELKKLKALERLIREALETIAARERLSKDLA 857 (859)
T ss_pred hHHHHHHHhhhchhhhhhhccccccccceEEEEeeccchhhHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999998 555555554333332333345788888999999999987655788899999999999988877643
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=6.2e-81 Score=736.94 Aligned_cols=700 Identities=21% Similarity=0.264 Sum_probs=503.7
Q ss_pred CCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCceeeEEEEEeccCCCCccccCeeEEEecCCeEEEE
Q 002864 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (872)
Q Consensus 11 p~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (872)
|+.+...||+|+|+++++...++|+++|+++...+...|+||+.+|+|.+|.+++. .+. ...+..+++.++|
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~------~~~--~~~~~~~~~~L~I 75 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGK------PLA--AGDYQLDDETLTI 75 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCE------ecC--cceEEEcCCEEEE
Confidence 56789999999999999999999999999988767778999999999999999652 111 1335566678888
Q ss_pred EeCCCcCCceEEEEEEEEeeec--CCCcceEEeeeccCCeeecccccCCCcccccccccccCCCCce----EEEEecCC-
Q 002864 91 EFAETLPTGMGVLAIGFEGVLN--DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACK----ITLDVPSE- 163 (872)
Q Consensus 91 ~l~~~L~~g~~~L~i~y~g~~~--~~~~G~~~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~k----l~i~~p~~- 163 (872)
.. + ++.++|+|.|.+... ....|+|++.+ ++.|||||.+||++|||+|+|++| ++|++|++
T Consensus 76 ~~---~-~~~~~l~i~~~~~p~~n~~l~GlY~s~~--------~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~ 143 (863)
T TIGR02414 76 AS---V-PESFTLEIETEIHPEENTSLEGLYKSGG--------NFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKK 143 (863)
T ss_pred ee---C-CccEEEEEEEEeecccCCCCeEEEEeCC--------eEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCc
Confidence 73 2 367899999977553 45789998753 568999999999999999999999 99999986
Q ss_pred C-eeeecCcccce-eecCCeEEEEEecCCCccceeeEEEEeeeeEeecc----ccCCeEEEEEEcCCchhhHHHHHHHHH
Q 002864 164 L-VALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQGKFALNVAV 237 (872)
Q Consensus 164 ~-~~~sng~~~~~-~~~~~~~~~~f~~t~~~~~yl~a~~vg~f~~~~~~----~~~g~~v~v~~~~~~~~~~~~~l~~~~ 237 (872)
| +++|||+++.. ...+++++++|+.++|||+|++||++|+|++++.. ...++++++|++|+..+.++++++.++
T Consensus 144 y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~ 223 (863)
T TIGR02414 144 YPVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLK 223 (863)
T ss_pred ceEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHH
Confidence 6 56899987765 44577888999999999999999999999988742 224589999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccccC
Q 002864 238 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTME 317 (872)
Q Consensus 238 ~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~vt~~ 317 (872)
++|++||++||+|||++|+++|++|+|..||||||||++|++..+|.++...+....+.+..+|+||+|||||||+||++
T Consensus 224 ~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~ 303 (863)
T TIGR02414 224 KAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCR 303 (863)
T ss_pred HHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeec
Confidence 99999999999999999999999999999999999999999999999988666667778999999999999999999999
Q ss_pred ccchhhhhhHHHHHHHHHHHhhhCcchhhHHHHHH-HHH--HhhhccccCCCCceeeecCCchhhhhcccceeechhhHH
Q 002864 318 WWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLD-ECT--EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 394 (872)
Q Consensus 318 ~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kga~v 394 (872)
||+++|||||||+|++..+.....+.... .+.. ... ..+..|+...+||+.. ....+++..|+.++|.||++|
T Consensus 304 ~W~~LWLnEGfAty~e~~~~~~~~~~~~~--~~~~~~~lr~~~f~~D~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~v 379 (863)
T TIGR02414 304 DWFQLSLKEGLTVFRDQEFSADMTSRAVK--RIEDVRLLRAHQFPEDAGPMAHPVRP--ESYVEINNFYTATVYEKGAEV 379 (863)
T ss_pred chhhhhhhhhHHHHHHHHHHHHhhhHHHH--HHHHHHHHHhhhhcccccccCCCCCC--cchhhHHhccchHHhHHHHHH
Confidence 99999999999999997766655443110 1110 111 2345577777888753 334567788999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCcHHHHHHHhhcCCCcceEEEEEeC----c--EEEEE
Q 002864 395 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELE 468 (872)
Q Consensus 395 l~mL~~~lG~~~F~~~lr~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~----~--~i~l~ 468 (872)
||||+..||++.|+++|+.|+++|++++++++|||+++++++|.|+.+|+ +|++|+|+|+|+|++++ + +++++
T Consensus 380 LrML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~ 458 (863)
T TIGR02414 380 IRMLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVR 458 (863)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999985 89999999999999863 2 56666
Q ss_pred EEeeccCCCCCCCeeEEEEEEEEC--cccc-----------eeeEEeeccceEEEecccccccccCCCCCCceEEecCCc
Q 002864 469 QSQFLSSGSPGDGQWIVPITLCCG--SYDV-----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQ 535 (872)
Q Consensus 469 Q~rf~~~~~~~~~~w~iPi~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~ 535 (872)
|.+....+......|.|||.+..- ++.. ...+.++.+++++.++.+. .. ...-++-+.
T Consensus 459 Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~-------~~--p~~sl~r~f 529 (863)
T TIGR02414 459 QSTPPTPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIA-------EK--PVPSLLRGF 529 (863)
T ss_pred EeCCCCCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCC-------CC--CeeeecCCC
Confidence 765433333445689999998652 2211 1235678888899888642 11 346677788
Q ss_pred eeEEEEEcCHHH--HHHHHHHHHcCCCChhhHHHHHHHHHHH-----HHcCC-CC-HHHHHHHHHhccCCC--cHHHHHH
Q 002864 536 TGFYRVKYDKDL--AARLGYAIEMKQLSETDRFGILDDHFAL-----CMARQ-QT-LTSLLTLMASYSEET--EYTVLSN 604 (872)
Q Consensus 536 ~gyyRV~Yd~~~--w~~l~~~l~~~~i~~~~ra~li~D~~~l-----a~~g~-l~-~~~~l~l~~~l~~e~--~~~~w~~ 604 (872)
.-+-++.|+... +..|...= .+.+.--+-+|-+..-.-+ ...|. +. -..+++.+..+-.+. +...-..
T Consensus 530 sapv~l~~~~~~~~l~~l~~~d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~a~ 608 (863)
T TIGR02414 530 SAPVNLEYPYSDEDLLLLLAHD-SDPFNRWEAGQRLARRVILANIARAQGGEELPVDPAFIDALGKLLNDPHLDAAFKAL 608 (863)
T ss_pred CceEEEeCCCCHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 888888766533 33322210 1222222222222111111 11232 21 245666666643322 3333332
Q ss_pred HHH--HHHHHHHHHhccChhH--------HHHHHHHHHHHHHHHHHhcCCcc---CCCCCHHHHHHHHHHHHHHHhcCCH
Q 002864 605 LIT--ISYKIGRIAADARPEL--------LDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLGHK 671 (872)
Q Consensus 605 ~~~--~l~~l~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~il~~ac~~g~~ 671 (872)
++. ....|...+..-+|+. ...+..-+...+..+|+++.-.. ...+....+.||..++.++|..+.+
T Consensus 609 ~l~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~ 688 (863)
T TIGR02414 609 LLALPSEAYLAELMENIDPDALHAAREFLRAAIARQLADDLLRLYDALQENGPYSVDPAAAGRRALRNACLSYLSAADDA 688 (863)
T ss_pred HhcCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCCh
Confidence 222 1223333332212222 22233333444555666653111 1122344589999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHH
Q 002864 672 ETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLE 751 (872)
Q Consensus 672 ~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d~~~l~~ 751 (872)
+..+.|.++|++--+ - --|-+.+.+++..-....++..+..++++++....-+|.-.+.|.+...| .+.+
T Consensus 689 ~~~~~~~~~~~~a~~---m-----td~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~--~~~~ 758 (863)
T TIGR02414 689 EIRNLALEQFKSADN---M-----TDRLAALSALVHFESDFRERALAAFYQKWKDDPLVMDKWFALQATSPRPD--TLER 758 (863)
T ss_pred hHHHHHHHHHHhCCC---H-----HHHHHHHHHHhcCCChhHHHHHHHHHHHHCCCchhHHHHHHHHhCCCccc--HHHH
Confidence 999999999986421 1 11222222222111011234567777788888888888888888554443 4444
Q ss_pred HHHH
Q 002864 752 VLNF 755 (872)
Q Consensus 752 ~L~~ 755 (872)
.-.+
T Consensus 759 v~~l 762 (863)
T TIGR02414 759 VKAL 762 (863)
T ss_pred HHHH
Confidence 4333
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=2.5e-80 Score=734.22 Aligned_cols=701 Identities=22% Similarity=0.292 Sum_probs=500.6
Q ss_pred CCCceeeeEEEEEEecCCCCeEEEEEEEEEEE-ECCCCEEEEEecCceeeEEEEEeccCCCCccccCeeEEEecCCeEEE
Q 002864 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILV 89 (872)
Q Consensus 11 p~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (872)
|+.+...||+|+|+++++...++|+++|+... .++.+.|+||+.+|+|.+|.+++. .+.+. .+..+++.|+
T Consensus 16 ~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~------~~~~~--~~~~~~~~L~ 87 (875)
T PRK14015 16 PPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQ------PLAPS--AYELDEEGLT 87 (875)
T ss_pred CCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCE------EcCcc--ceEEcCCEEE
Confidence 55688899999999999999999999999876 456789999999999999999752 11111 4555567888
Q ss_pred EEeCCCcCCceEEEEEEEEeeec--CCCcceEEeeeccCCeeecccccCCCcccccccccccCCCCce----EEEEecCC
Q 002864 90 LEFAETLPTGMGVLAIGFEGVLN--DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACK----ITLDVPSE 163 (872)
Q Consensus 90 i~l~~~L~~g~~~L~i~y~g~~~--~~~~G~~~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~k----l~i~~p~~ 163 (872)
|. ++ ++.++|+|.|++.+. ....|+|++.+ +++|||||.+||+||||+|+|+.| ++|++|++
T Consensus 88 I~---~l-~~~~~l~I~y~~~P~~n~~l~Gly~s~~--------~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~ 155 (875)
T PRK14015 88 IE---NL-PDRFTLEIETEIDPEANTALEGLYRSGG--------MFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKA 155 (875)
T ss_pred Ee---cC-CccEEEEEEEEEecCCCCCceeeEEECC--------EEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccc
Confidence 87 23 346899999998664 34679998642 568999999999999999999999 99999994
Q ss_pred -C-eeeecCccccee-ecCCeEEEEEecCCCccceeeEEEEeeeeEeecc--c--cCCeEEEEEEcCCchhhHHHHHHHH
Q 002864 164 -L-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH--T--SDGIKVRVYCQVGKANQGKFALNVA 236 (872)
Q Consensus 164 -~-~~~sng~~~~~~-~~~~~~~~~f~~t~~~~~yl~a~~vg~f~~~~~~--~--~~g~~v~v~~~~~~~~~~~~~l~~~ 236 (872)
| +++|||+++... ..+++++++|+.++|||+|++||++|+|++++.. + .+++++++|++|+..+.++++++.+
T Consensus 156 ~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~ 235 (875)
T PRK14015 156 KYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSL 235 (875)
T ss_pred cCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHH
Confidence 8 679999988774 4677899999999999999999999999988742 2 2359999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHHhcCcccc
Q 002864 237 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 316 (872)
Q Consensus 237 ~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~vt~ 316 (872)
+++|++||++||.|||++|+++|++|+|..|||||||+++|++..++.++...+......+..+|+||+|||||||+||+
T Consensus 236 ~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~ 315 (875)
T PRK14015 236 KKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTC 315 (875)
T ss_pred HHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCccee
Confidence 99999999999999999999999999999999999999999999888888766666777889999999999999999999
Q ss_pred CccchhhhhhHHHHHHHHHHHhhhCcc-hhhHHHHHHHHHHhhhccccCCCCceeeecCCchhhhhcccceeechhhHHH
Q 002864 317 EWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 395 (872)
Q Consensus 317 ~~w~d~WL~EGfa~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kga~vl 395 (872)
.||+++|||||||+|++..+.....+. ..............+..|....+||+... ...++...|+.++|.||++||
T Consensus 316 ~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~a~pi~p~--~~~~i~~~f~~~~Y~KGA~vL 393 (875)
T PRK14015 316 RDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPMAHPVRPD--SYIEINNFYTATVYEKGAEVI 393 (875)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccccccCCCCCCc--chhhHHhcccchhhhHHHHHH
Confidence 999999999999999987766554432 11110100000122445666666776532 344677889999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCcHHHHHHHhhcCCCcceEEEEEeC----c--EEEEEE
Q 002864 396 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQ 469 (872)
Q Consensus 396 ~mL~~~lG~~~F~~~lr~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~----~--~i~l~Q 469 (872)
|||+..||++.|+++|+.|+++|++++++++||++++++++|.|+.+|+ +|++|+|+|+|+|+++. + +++++|
T Consensus 394 rMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q 472 (875)
T PRK14015 394 RMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQ 472 (875)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999986 89999999999999863 2 467777
Q ss_pred EeeccCCCCCCCeeEEEEEEEECc--ccc----------eeeEEeeccceEEEecccccccccCCCCCCceEEecCCcee
Q 002864 470 SQFLSSGSPGDGQWIVPITLCCGS--YDV----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTG 537 (872)
Q Consensus 470 ~rf~~~~~~~~~~w~iPi~~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~g 537 (872)
.+....+......|.|||.+..-+ +.. ...+.++.+++++.++.+. .. ..+-++-+...
T Consensus 473 ~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~q~f~f~~~~-------~~--p~~s~~r~fsa 543 (875)
T PRK14015 473 STPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTEAEQTFTFENVA-------ER--PVPSLLRGFSA 543 (875)
T ss_pred eCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcCCeeEEEEcCCC-------CC--ceEEecCCCCC
Confidence 654333344456899999996422 221 2236678888899988532 11 34677888888
Q ss_pred EEEEEcCHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHH--HHc-CC-CC-HHHHHHHHHhccC--CCcHHHHHHHHHH
Q 002864 538 FYRVKYDKDLAARLGYAIEM--KQLSETDRFGILDDHFAL--CMA-RQ-QT-LTSLLTLMASYSE--ETEYTVLSNLITI 608 (872)
Q Consensus 538 yyRV~Yd~~~w~~l~~~l~~--~~i~~~~ra~li~D~~~l--a~~-g~-l~-~~~~l~l~~~l~~--e~~~~~w~~~~~~ 608 (872)
+-++.|+... +.|.-.+.. +.++--+-+|-+..-.-+ ... |. +. -..+++.++.+-. +.+...-..++..
T Consensus 544 pv~~~~~~~~-~~l~~l~~~d~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~l 622 (875)
T PRK14015 544 PVKLEYDYSD-EDLLFLMAHDSDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRAVLLDESLDPAFAAELLTL 622 (875)
T ss_pred cEEEeCCCCH-HHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHccC
Confidence 8888776533 222222221 233322222222221111 111 22 21 2446666665432 2344333333322
Q ss_pred H--HHHHHHHhccChhH--------HHHHHHHHHHHHHHHHHhcCCcc---CCCCCHHHHHHHHHHHHHHHhcCCHHHHH
Q 002864 609 S--YKIGRIAADARPEL--------LDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLGHKETLN 675 (872)
Q Consensus 609 l--~~l~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~il~~ac~~g~~~c~~ 675 (872)
- ..|...+..-+++. ...+..-+...+..+|.++.-.. ...+....+.||..++.++|..+.++..+
T Consensus 623 p~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~~ 702 (875)
T PRK14015 623 PSEAELAEQMEVIDPDAIHAAREALRRALATALKDELLALYEALQTDGPYSPDAEAAGRRALRNVCLSYLAAADDEEAAE 702 (875)
T ss_pred CCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 1 23333322111222 22233333334455555542111 11233456899999999999999999988
Q ss_pred HHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCC-HHHHHHH
Q 002864 676 EASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPD-VNIVLEV 752 (872)
Q Consensus 676 ~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d-~~~l~~~ 752 (872)
.|.+.|++--+ - . -|-+.+.+++..-....++..+..+++|++....-+|.-.+.|.+-..| -+.++++
T Consensus 703 ~~~~~~~~a~~---m----t-d~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l 772 (875)
T PRK14015 703 LAEAQFDQADN---M----T-DRLAALSALVNADLPERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRAL 772 (875)
T ss_pred HHHHHHhhCCC---H----H-HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHH
Confidence 89999985421 1 1 1222222222211111234567777778888778889888888765555 2334443
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=4.2e-73 Score=654.64 Aligned_cols=423 Identities=24% Similarity=0.383 Sum_probs=344.9
Q ss_pred cCCCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECC-CCEEEEEecCceeeEEEEEeccCCCCccccCeeEE----Eec
Q 002864 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGD-TKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVE----LVE 83 (872)
Q Consensus 9 rLp~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~-~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~----~~~ 83 (872)
.=|..++|.||+|+|++|+++.+|+|+|+|++++.++ ++.|+||+.+|+|++|.+++. +..+. .+.
T Consensus 6 sn~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~---------~~~~~~~~~~~~ 76 (601)
T TIGR02411 6 SNYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGL---------PADFAIGERKEP 76 (601)
T ss_pred cCCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCc---------ccceEeccccCC
Confidence 3477899999999999999999999999999999765 688999999999999988652 11222 223
Q ss_pred CCeEEEEEeCCCcCCc-eEEEEEEEEeeecCCCcceEEeee-ccCCeeecccccCCCcccccccccccCCCCce----EE
Q 002864 84 ADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACK----IT 157 (872)
Q Consensus 84 ~~~~l~i~l~~~L~~g-~~~L~i~y~g~~~~~~~G~~~~~y-~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~k----l~ 157 (872)
.++.++|.+++++.+| .++|+|.|++.++ ..|++...+ ..+|..+++++|||||++||+||||||+|..| ++
T Consensus 77 ~g~~L~I~l~~~l~~g~~~~l~I~Y~~~~~--~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~ 154 (601)
T TIGR02411 77 LGSPLTISLPIATSKNKELVLNISFSTTPK--CTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAE 154 (601)
T ss_pred CCCeEEEEeCCccCCCceEEEEEEEeecCC--CceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEEE
Confidence 5678999999999999 8999999999754 346654433 23466778889999999999999999999999 99
Q ss_pred EEecCCCeeeecCcccceeecCCeEEEEEecCCCccceeeEEEEeeeeEeeccccCCeEEEEEEcCCchhhHHHHHH-HH
Q 002864 158 LDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VA 236 (872)
Q Consensus 158 i~~p~~~~~~sng~~~~~~~~~~~~~~~f~~t~~~~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~ 236 (872)
|++| ++|++||....+. .++..+++|+.++|||+|++||+||+|+..+ .|.++++|++|+..+.+++.+. .+
T Consensus 155 I~~P--~~av~sg~~~~~~-~~~~~~~~F~~t~pmptYLia~avG~~~~~~----~g~~~~v~~~p~~~~~~~~~~~~~~ 227 (601)
T TIGR02411 155 VESP--LPVLMSGIPDGET-SNDPGKYLFKQKVPIPAYLIALASGDLASAP----IGPRSSVYSEPEQLEKCQYEFEHDT 227 (601)
T ss_pred EeeC--cceeccCCccccc-cCCCceEEEEeCCCcchhhheeeeccceecc----cCCceEEEccchhHHHHHHHHHHhH
Confidence 9999 8998777655433 2345678999999999999999999998654 3678999999998888888888 99
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeec-CCCCCcccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccc
Q 002864 237 VKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 315 (872)
Q Consensus 237 ~~~l~~~e~~~g~~yP~~kld~v~~-p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~vt 315 (872)
.++|+++|+++| |||++|+|+|++ |+|++||||||| ++|.+..++.+.. ....+||||+|||||||+||
T Consensus 228 ~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~-ltf~~~~ll~~d~--------s~~~viaHElAHqWfGNlVT 297 (601)
T TIGR02411 228 ENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPN-LTFATPTLIAGDR--------SNVDVIAHELAHSWSGNLVT 297 (601)
T ss_pred HHHHHHHHHhCC-CCcCccceEEEecCccccccccccc-ceeeccccccCCh--------hhhhhHHHHHHhhccCceee
Confidence 999999999877 999999999987 789999999999 5677776665432 23579999999999999999
Q ss_pred cCccchhhhhhHHHHHHHHHHHhhhCcchhhH-HHHHH-HHH-HhhhccccCCCCceeeecCCc--hhhhhcccceeech
Q 002864 316 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIW-TQFLD-ECT-EGLRLDGLAESHPIEVEVNHT--GEIDEIFDAISYRK 390 (872)
Q Consensus 316 ~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~d~~~~~~p~~~~~~~~--~~~~~~f~~i~Y~K 390 (872)
++||+|+|||||||+|++.+++++++|++... ..+.. ... ..+ +.+...+|+...+.+. .+++..|+.++|.|
T Consensus 298 ~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~K 375 (601)
T TIGR02411 298 NCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESV--KTLGEDPEYTKLVVDLKDNDPDDAFSSVPYEK 375 (601)
T ss_pred cCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHH--HhhcCCCCCCcccccCCCCChhhhccccchhh
Confidence 99999999999999999999999999986431 11111 111 111 2223334444333222 25678999999999
Q ss_pred hhHHHHHHHHhhC-HHHHHHHHHHHHHHhccCCCChHHHHHHHHhcc-----CCcHHHH-HHHhhcCCCcceEEEEEe
Q 002864 391 GASVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGS-----GEPVNKL-MNSWTKQKGYPVISVKVK 461 (872)
Q Consensus 391 ga~vl~mL~~~lG-~~~F~~~lr~yl~~~~~~~~~~~df~~~l~~~~-----~~~l~~~-~~~W~~~~g~P~l~v~~~ 461 (872)
|+++|+||+..|| ++.|+++||.|+++|+|++++++||++++.+.. +.+++.+ |++|++++|+|.+.++.+
T Consensus 376 Ga~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 376 GFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 9999999999999 999999999999999999999999999998763 2456666 899999999999876644
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=7.9e-71 Score=619.86 Aligned_cols=381 Identities=46% Similarity=0.818 Sum_probs=338.3
Q ss_pred cCCCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCceeeEEEEEeccCCCCccccCeeEEEecCCeEE
Q 002864 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEIL 88 (872)
Q Consensus 9 rLp~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l 88 (872)
|||++++|.||+|.|++|+++.+|+|+++|++++.++++.|+||+.+++|.++.+.+.... .......+.++.+++.+
T Consensus 1 RLp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~--~~~~~~~~~~~~~~~~l 78 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSS--SEYKSSPFEYDDENEKL 78 (390)
T ss_dssp S--TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECS--CTECCEEEEEECCBTEE
T ss_pred CCCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCcccc--ccccccceeecccccee
Confidence 8999999999999999999999999999999999999999999999999999999753221 11122337788888999
Q ss_pred EEEeCCCcCCc-eEEEEEEEEeeecCCCcceEEeeecc--CCeeecccccCCCcccccccccccCCCCce----EEEEec
Q 002864 89 VLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL--NGEKKNMAVTQFEPADARRCFPCWDEPACK----ITLDVP 161 (872)
Q Consensus 89 ~i~l~~~L~~g-~~~L~i~y~g~~~~~~~G~~~~~y~~--~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~k----l~i~~p 161 (872)
+|.+++++.+| .|+|+|.|+|.++++..|+|++.|.+ ++...++++||++|.+||+||||||+|.+| ++|++|
T Consensus 79 ~I~l~~~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p 158 (390)
T PF01433_consen 79 TITLPKPLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHP 158 (390)
T ss_dssp EEEEEEECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEE
T ss_pred ehhhhhhcccCcEEEEEEEEeecccccccccccceeecccccccCCceeecccccccceeeeeeccCCccceEEEeeecc
Confidence 99999999999 79999999999999899999999975 678889999999999999999999999999 999999
Q ss_pred CCCeeeecCcccce-eecCCeEEEEEecCCCccceeeEEEEeeeeEeeccccCCeEEEEEEcCCchhhHHHHHHHHHHHH
Q 002864 162 SELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTL 240 (872)
Q Consensus 162 ~~~~~~sng~~~~~-~~~~~~~~~~f~~t~~~~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~~~~~l 240 (872)
++++|+|||++... ...+++++++|..++|||+|++||+||+|..++..+.+|+++++|++|+..+.++++++.+.+++
T Consensus 159 ~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 238 (390)
T PF01433_consen 159 KDYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKAL 238 (390)
T ss_dssp TTTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHH
T ss_pred ccceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHH
Confidence 99999999999887 44568999999999999999999999999998866666799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCcceeecCCCCCcccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccccCccc
Q 002864 241 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 320 (872)
Q Consensus 241 ~~~e~~~g~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~vt~~~w~ 320 (872)
++|+++||+|||++|+++|++|++..|||||||+|+|++..++++++.++...+..+..+||||+|||||||+||++||+
T Consensus 239 ~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~ 318 (390)
T PF01433_consen 239 EYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWS 318 (390)
T ss_dssp HHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGG
T ss_pred HHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccch
Confidence 99999999999999999999999999999999999999999999998888888889999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhhhCcchhhHHHHHHHHH-HhhhccccCCCCceeeecCCchhhhhcccceeechh
Q 002864 321 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKG 391 (872)
Q Consensus 321 d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg 391 (872)
|+||+||||+|++++++++.+|++.++..+..+.. .++..|.....+|+..++.++.++...|+.++|.||
T Consensus 319 d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 319 DLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 99999999999999999999999888888877765 779999999999999888899999999999999998
No 8
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-52 Score=443.19 Aligned_cols=426 Identities=26% Similarity=0.392 Sum_probs=335.4
Q ss_pred CCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCceeeEEEEEeccCCCCccccCe-eEEEecCCeEEE
Q 002864 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPT-KVELVEADEILV 89 (872)
Q Consensus 11 p~~v~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~-~~~~~~~~~~l~ 89 (872)
|..+...|++|++.+|++...++|++.+++++......|+|+.++|.|.+|.+++... ...+. .-.+...+..+.
T Consensus 13 ~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~----~~~i~~~~~~~g~~~~~~ 88 (613)
T KOG1047|consen 13 YRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEP----PFRIGFRQPFLGSGQKLV 88 (613)
T ss_pred hhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCC----CCccCcccCCCCCceEEE
Confidence 4556789999999999999999999999999877766799999999999999976321 11111 112233334455
Q ss_pred EEeCCCcCCc-eEEEEEEEEeeecCCCcceEEeee-ccCCeeecccccCCCcccccccccccCCCCce----EEEEecCC
Q 002864 90 LEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACK----ITLDVPSE 163 (872)
Q Consensus 90 i~l~~~L~~g-~~~L~i~y~g~~~~~~~G~~~~~y-~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~k----l~i~~p~~ 163 (872)
+..+.+ +.| +.+|.|.|+.... ..++-.-.. ...|+...|+.+||+..+||.+|||+|.|+.| ..|.+|.+
T Consensus 89 l~~~~~-~a~~~~~l~i~y~Ts~~--atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~ 165 (613)
T KOG1047|consen 89 LPAPSS-KAGERLQLLIWYETSPS--ATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMG 165 (613)
T ss_pred eccccc-cccCceEEEEEEeccCC--cceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCc
Confidence 554433 455 8999999986543 334433222 33477889999999999999999999999999 88999999
Q ss_pred CeeeecCccccee-ecCCeEEEEEecCCCccceeeEEEEeeeeEeeccccCCeEEEEEEcCCchhhHHHHHH-HHHHHHH
Q 002864 164 LVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VAVKTLE 241 (872)
Q Consensus 164 ~~~~sng~~~~~~-~~~~~~~~~f~~t~~~~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~~~~l~ 241 (872)
+++++++...++. -..++..++|....|+|+|++||++|+....+ -|.+-+||+.|...+.+++-+. .+.++|+
T Consensus 166 l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~e----IgpRs~VwaEp~~~~a~~~ef~~~~e~~L~ 241 (613)
T KOG1047|consen 166 LTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESRE----IGPRSRVWAEPCLLDACQEEFAGETEDFLK 241 (613)
T ss_pred ceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccc----cCCccceecchhhhHHHHHHHHhhhHHHHH
Confidence 9999998775543 34458889999999999999999999987554 2677899999999888887776 9999999
Q ss_pred HHHHHhCCCCCCCCcceeec-CCCCCcccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccccCccc
Q 002864 242 LYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 320 (872)
Q Consensus 242 ~~e~~~g~~yP~~kld~v~~-p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~vt~~~w~ 320 (872)
.-|+.+| ||++.++|+|++ |+|++||||||.+.+...+ +|-++. ....+|||||||-||||+||...|+
T Consensus 242 ~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGDr--------sl~~vIaHEIAHSWtGNlVTN~sWe 311 (613)
T KOG1047|consen 242 AAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGDR--------SLVDVIAHEIAHSWTGNLVTNASWE 311 (613)
T ss_pred HHHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCCc--------chhhHHHHHhhhhhcccccccCccc
Confidence 9999999 999999999998 5999999999977666665 554443 3578999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhhhCcchhhHHHHHHHHH-Hh--hhccccCCCCceeeecCC--chhhhhcccceeechhhHHH
Q 002864 321 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EG--LRLDGLAESHPIEVEVNH--TGEIDEIFDAISYRKGASVI 395 (872)
Q Consensus 321 d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~d~~~~~~p~~~~~~~--~~~~~~~f~~i~Y~Kga~vl 395 (872)
+.||||||++|++..++..++|+... +|..-.. .. -.+|.+...++...-+.+ .-+++..|+.+.|.||..+|
T Consensus 312 hfWLNEGfTvylErrI~g~~~g~~~~--~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll 389 (613)
T KOG1047|consen 312 HFWLNEGFTVYLERRIVGRLYGEAYR--QFEALIGWRELRPSMDLFGETSEFTKLVVKLENVDPDDAFSQVPYEKGFALL 389 (613)
T ss_pred hhhhcccchhhhhhhhhhhhcchhHH--HHHHhcChhhhhhHHHhcCCCcccchhhhhccCCChHHhhhcCchhhhhHHH
Confidence 99999999999999999999987432 2211111 11 123555555555432211 13557889999999999999
Q ss_pred HHHHHhhC-HHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCC----cH--HHHHHHhhcCCCcceEEEE
Q 002864 396 RMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE----PV--NKLMNSWTKQKGYPVISVK 459 (872)
Q Consensus 396 ~mL~~~lG-~~~F~~~lr~yl~~~~~~~~~~~df~~~l~~~~~~----~l--~~~~~~W~~~~g~P~l~v~ 459 (872)
+.|++.+| ++.|...||.|+++|+++.+.++||.+.+-+.... ++ +--++.|++.+|.|...-.
T Consensus 390 ~~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~ 460 (613)
T KOG1047|consen 390 FYLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPN 460 (613)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCC
Confidence 99999999 77899999999999999999999999998775432 22 2347999999999985543
No 9
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=100.00 E-value=2.6e-50 Score=441.78 Aligned_cols=313 Identities=37% Similarity=0.637 Sum_probs=270.1
Q ss_pred eEEecCCceeEEEEEcCHHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhc-cCCCcHHHHHHHH
Q 002864 528 WIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASY-SEETEYTVLSNLI 606 (872)
Q Consensus 528 wi~~N~~~~gyyRV~Yd~~~w~~l~~~l~~~~i~~~~ra~li~D~~~la~~g~l~~~~~l~l~~~l-~~e~~~~~w~~~~ 606 (872)
||++|.+++|||||+||+++|+.|+++|..+.|++.+|++|++|+|+++++|+++++.+|+++.|+ ++|++|.||..++
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~ 80 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTAL 80 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 999999999999999999999999999987669999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 002864 607 TISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA 686 (872)
Q Consensus 607 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~ 686 (872)
..|..+.+++...++.....|++|+.+++.++++++||+..+++++....+|..|+.+|| |+++|+++|.++|++|+.
T Consensus 81 ~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~ 158 (324)
T PF11838_consen 81 SNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhc
Confidence 999999977763334444559999999999999999999988899999999999999999 999999999999999998
Q ss_pred CCCC--CCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhhcCc-CCc
Q 002864 687 DRTT--PLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRS 763 (872)
Q Consensus 687 ~~~~--~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d~~~l~~~L~~~l~~~-i~~ 763 (872)
++.. ..|||++|.+|||++ +++|+.++|++++++|++++++.||..++.||||++|+++++++|+++++++ ++.
T Consensus 159 ~~~~~~~~i~~dlr~~v~~~~---~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~ 235 (324)
T PF11838_consen 159 GNDSPESSIPPDLRWAVYCAG---VRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRS 235 (324)
T ss_dssp TTT-TTSTS-HHHHHHHHHHH---TTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-T
T ss_pred CCcccccccchHHHHHHHHHH---HHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCccccc
Confidence 6433 389999999888765 5589999999999999999999999999999999999999999999999986 999
Q ss_pred ccceeeee-ec-cc--cHHHHHHHHHHHHHHHHHHhCCC-cchHHHHHHhhccCCCHHHHHHHHHHhhc--CCCchHHHH
Q 002864 764 QDAVYGLA-VS-IE--GRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS--RCKPYIART 836 (872)
Q Consensus 764 qd~~~~~~-v~-~~--g~~~~~~fl~~n~~~i~~~~~~~-~~l~~~i~~~~~~~~t~~~~~~~~~f~~~--~~~~~~~~~ 836 (872)
||+..++. ++ .+ |++++|+|+++||+.|.+++++. +.+..++..+++.++|+++++++++||+. +..++..++
T Consensus 236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~r~ 315 (324)
T PF11838_consen 236 QDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLRRA 315 (324)
T ss_dssp TTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTTHH
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhCcCCChHHHHH
Confidence 99988888 76 55 99999999999999999999865 47899999999999999999999999954 445688899
Q ss_pred HHHHHHHHH
Q 002864 837 LRQSIERVQ 845 (872)
Q Consensus 837 ~~~~le~i~ 845 (872)
++|++|+||
T Consensus 316 l~q~~e~Ir 324 (324)
T PF11838_consen 316 LAQSLETIR 324 (324)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999986
No 10
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=1.4e-34 Score=328.55 Aligned_cols=424 Identities=19% Similarity=0.276 Sum_probs=310.9
Q ss_pred eeeEEEEEE-ecCCCCeEEEEEEEEEEEE-CCCCEEEEEecCceeeEEEEEeccCC---------------CCcccc---
Q 002864 16 PKRYDIRLT-PDLTSCKFGGSVAIDVDVV-GDTKFIVLNAADLTINNRSVSFTNKV---------------SSKALE--- 75 (872)
Q Consensus 16 p~~Y~l~l~-~d~~~~~~~G~v~I~~~~~-~~~~~i~L~~~~l~i~~v~i~~~~~~---------------~~~~~~--- 75 (872)
-.|..+.|. +|+.+..+.|.++|++... .+...|+||++++.|.+|.+++..+. .+....
T Consensus 27 ~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s 106 (1180)
T KOG1932|consen 27 VLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPAS 106 (1180)
T ss_pred ceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhh
Confidence 589999998 9999999999999999974 45899999999999999999875110 000000
Q ss_pred ------CeeEEEecCCeEEEEEeCCCcCC-c----eEEEEEEEEeeecCCCcceEEeeeccCCeeecccccCCC-ccccc
Q 002864 76 ------PTKVELVEADEILVLEFAETLPT-G----MGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFE-PADAR 143 (872)
Q Consensus 76 ------~~~~~~~~~~~~l~i~l~~~L~~-g----~~~L~i~y~g~~~~~~~G~~~~~y~~~g~~~~~~~t~~e-p~~Ar 143 (872)
..-...+.+++.|.|.++++++. | ..+|.|.|+..-+..+--|++..|........+.++..+ +.+||
T Consensus 107 ~~~~~~~~y~~l~~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar 186 (1180)
T KOG1932|consen 107 QSHFLAVQYEDLDEDNGELLIKIPKESKKVGEELKALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSAR 186 (1180)
T ss_pred hhhhHHHhhhccccCCCeEEEEcCchhhhhhhhccceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccc
Confidence 01112244567899999988543 2 456779998765555555666655322222233334444 56799
Q ss_pred ccccccCCCCce----EEEEecCCCeeeecCcccce--eecCCeEEEEEecCCCccceeeEEEEeeeeEeeccccCCeEE
Q 002864 144 RCFPCWDEPACK----ITLDVPSELVALSNMPVIDE--KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKV 217 (872)
Q Consensus 144 ~~fPc~DeP~~k----l~i~~p~~~~~~sng~~~~~--~~~~~~~~~~f~~t~~~~~yl~a~~vg~f~~~~~~~~~g~~v 217 (872)
.||||.|.+..+ +++++|..++++++|.+... ..+-..++++|.-+.|+++.-++|+||+|+.... ..+++|
T Consensus 187 ~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~--P~~~~i 264 (1180)
T KOG1932|consen 187 SWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVE--PSMIDI 264 (1180)
T ss_pred eEEeecCCccccceEEEEEEecccceeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccCC--CccCcc
Confidence 999999999988 99999999999999998876 2333578999999999999999999999998742 347899
Q ss_pred EEEEcCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccccccccccccccCCCChHHHHHHH
Q 002864 218 RVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRV 297 (872)
Q Consensus 218 ~v~~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~ 297 (872)
..|+.|+.........-...++++|||+++|..|||+.+.+|++|....--|....|.++..+ +|++.+. +......
T Consensus 265 ~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~-lLy~~~i--IDq~~~t 341 (1180)
T KOG1932|consen 265 THFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTS-LLYSKNI--IDQTFLT 341 (1180)
T ss_pred eeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeecc-ccchHhh--hhHHHHH
Confidence 999999999989999999999999999999988999999999999877777777888888877 8887763 3444557
Q ss_pred HHHHHHHHHHHHhcCccccCccchhhhhhHHHHHHHHHHHhhhCcchhhHHHHHHHHHHhhhccccCC----CCceeeec
Q 002864 298 ATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAE----SHPIEVEV 373 (872)
Q Consensus 298 ~~~iaHElaHqWfGn~vt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~p~~~~~ 373 (872)
...+|-.+|.||||-.+|+..|+|.||-+|+|.|+..+++++.+|.+....+.-.+.-.-+.+|...+ +.|+....
T Consensus 342 r~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~Pi~~s~ 421 (1180)
T KOG1932|consen 342 RRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRPISPSM 421 (1180)
T ss_pred HHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccCCCcch
Confidence 78999999999999999999999999999999999999999999987654333222212233333211 11222111
Q ss_pred C--------------CchhhhhcccceeechhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCc
Q 002864 374 N--------------HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEP 439 (872)
Q Consensus 374 ~--------------~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~~~F~~~lr~yl~~~~~~~~~~~df~~~l~~~~~~~ 439 (872)
. +..-.+..|..-.-.|+..+.+|+++.+|.+-|.+..+..+.. ++...
T Consensus 422 k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~-----------------~~~~~ 484 (1180)
T KOG1932|consen 422 KFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLEL-----------------ASKML 484 (1180)
T ss_pred hhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHh-----------------hhhhH
Confidence 1 0000111111112247888888888888888776665554432 33333
Q ss_pred HHHHHHHhhcCCCcceEEEEEe
Q 002864 440 VNKLMNSWTKQKGYPVISVKVK 461 (872)
Q Consensus 440 l~~~~~~W~~~~g~P~l~v~~~ 461 (872)
++.|++.|++..|+|++.+...
T Consensus 485 ~k~~~~~Wv~~~g~~~~r~~~~ 506 (1180)
T KOG1932|consen 485 LKSFFQTWVYGLGVPILRLGQR 506 (1180)
T ss_pred HHHHHHHHHhccCCeeEEEEEE
Confidence 5778888888888888887754
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.22 E-value=3.8e-10 Score=121.80 Aligned_cols=237 Identities=16% Similarity=0.205 Sum_probs=156.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeec-CCCCCcccccccccccccccccccCCCChHHHHHHHHHHHHHHH
Q 002864 227 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHEL 305 (872)
Q Consensus 227 ~~~~~~l~~~~~~l~~~e~~~g~~yP~~kld~v~~-p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEl 305 (872)
...+...+.++++++.--+.|| +-||.++.+++- .+-.+|||||-.-........-+.+ ....+....+++||.
T Consensus 181 ~d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~l~~~r~~~~~----~~ky~~~l~llsHEy 255 (558)
T COG3975 181 FDKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTALIYDRFGFTD----QDKYQDLLGLLSHEY 255 (558)
T ss_pred ccHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceeccccccccccccccc----hhHHHHHHHHHHHHH
Confidence 4566777888899999999999 789999887654 5666789998654443333222211 112466789999999
Q ss_pred HHHHhcCccccCcc-----------chhhhhhHHHHHHHHHHHhhhCcchhhHHHHHH---HHHHhhhccccCCCCceee
Q 002864 306 AHQWFGNLVTMEWW-----------THLWLNEGFATWVSYLAADSLFPEWKIWTQFLD---ECTEGLRLDGLAESHPIEV 371 (872)
Q Consensus 306 aHqWfGn~vt~~~w-----------~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~ 371 (872)
.|-|-+..+.+.-- .-+|+.|||++|+..+..-.. |-.. .++|+. +...++..-...-.+|+..
T Consensus 256 fH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRs-gl~~-~~~~l~~la~tl~~~~~~~gRl~~~laE 333 (558)
T COG3975 256 FHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRS-GLIS-LETYLNYLAKTLARYLNTPGRLRQSLAE 333 (558)
T ss_pred HHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHh-ccCc-HHHHHHHHHHHHHHHhcCCceecccccc
Confidence 99999877766432 459999999999997654332 1111 123332 2222222222222233322
Q ss_pred ecCCc-----hhhhhc-cccee--echhhHHHHHHHHhh-----CHHHHHHHHHHHHHHhcc--CCCChHHHHHHHHhcc
Q 002864 372 EVNHT-----GEIDEI-FDAIS--YRKGASVIRMLQNYL-----GAECFQRSLASYIKKYAC--SNAKTEDLWAALEEGS 436 (872)
Q Consensus 372 ~~~~~-----~~~~~~-f~~i~--Y~Kga~vl~mL~~~l-----G~~~F~~~lr~yl~~~~~--~~~~~~df~~~l~~~~ 436 (872)
...++ .. +.. -+.+. |.||++|--+|...| |+..+...||.+.+.+.. +..+++++...+++++
T Consensus 334 sS~~awik~yr~-d~ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~e~v~av~~~~t 412 (558)
T COG3975 334 SSFDAWIKYYRP-DENSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTPEDVQAVLENVT 412 (558)
T ss_pred cccchhHHhhcc-cccccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCHHHHHHHHHhhc
Confidence 11111 00 111 12233 999999988888877 567799999999998766 6679999999999999
Q ss_pred CCcHHHHHHHhhcCCCcceEEEEEeCcEEEEEEEe
Q 002864 437 GEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQ 471 (872)
Q Consensus 437 ~~~l~~~~~~W~~~~g~P~l~v~~~~~~i~l~Q~r 471 (872)
|.++..||+..+.+..-|.+.--.....+++++++
T Consensus 413 g~dl~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~ 447 (558)
T COG3975 413 GLDLATFFDEYIEGTEPPPLNPLLERFGLTFTPKP 447 (558)
T ss_pred cccHHHHHHHHhhcCCCCChhhhhhhcceEEEecC
Confidence 99999999999999877766433333456666654
No 12
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.13 E-value=7e-11 Score=110.23 Aligned_cols=106 Identities=29% Similarity=0.499 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHhcCccccCccchhhhhhHHHHHHHHHHHhhhCcchhhHHHHHHHHHHhhhccccCCCCceeeecC
Q 002864 295 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVN 374 (872)
Q Consensus 295 ~~~~~~iaHElaHqWfGn~vt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~ 374 (872)
..+..+++||++|+|+++.++.......|++||+|+|++.. ... .+.......+..+...+..++.....
T Consensus 23 ~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~----~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (128)
T PF13485_consen 23 DWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGR----IED------EFDEDLKQAIESGSLPPLEPLNSSFD 92 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcC----ccc------hhHHHHHHHHHcCCCCChHHHhcccc
Confidence 34568999999999999999877788899999999999932 111 11122222333333333223322111
Q ss_pred CchhhhhcccceeechhhHHHHHHHHhhCHHHHHHHHHHH
Q 002864 375 HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASY 414 (872)
Q Consensus 375 ~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~~~F~~~lr~y 414 (872)
. ...+....|.+|++++++|....|++.|++.|++|
T Consensus 93 ~----~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 93 F----SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred c----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 33455668999999999999999999999999875
No 13
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.63 E-value=0.0027 Score=68.32 Aligned_cols=143 Identities=18% Similarity=0.213 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHH-h-cCccccC--ccchhhhhhHHHHHHHHHHHhhhCcchhhHHHHHHHHHHhhhcc-ccCCCCc
Q 002864 294 KQRVATVVAHELAHQW-F-GNLVTME--WWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLD-GLAESHP 368 (872)
Q Consensus 294 ~~~~~~~iaHElaHqW-f-Gn~vt~~--~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~p 368 (872)
...+..++|||+-|+= | -+.|... .-.|.|||||++.-+|.++..+..+.... ........+..+ .....+.
T Consensus 136 ~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~---i~d~R~~~y~~~~~~~~~~~ 212 (366)
T PF10460_consen 136 PDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNN---IRDSRIPYYNNYTSGNYNCS 212 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCc---cccccHHHHhhccccCCCcc
Confidence 3557899999999974 2 2334333 34699999999999999887776432111 000000111111 1111122
Q ss_pred eeeecCCchhhhhcccceeechhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHh-c-cCCcHHHHHHH
Q 002864 369 IEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEE-G-SGEPVNKLMNS 446 (872)
Q Consensus 369 ~~~~~~~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~~~F~~~lr~yl~~~~~~~~~~~df~~~l~~-~-~~~~l~~~~~~ 446 (872)
+... ... . -.-..|....+++.-|....|.+.+++.|. . ....+..+..++..+ + .+.++.++|.+
T Consensus 213 l~~w-~~~---g--~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~----~--~~~tds~avl~aa~~~~~~~~sf~~~l~~ 280 (366)
T PF10460_consen 213 LTAW-SSF---G--DSLASYSSSYSFGAYLYRQYGGDFYKKLLT----N--SSSTDSEAVLDAAIKQAGPGNSFGELLRR 280 (366)
T ss_pred eeec-CCC---c--cccccchhHHHHHHHHHHHcChHHHHHHHh----c--CCCCcHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 2211 111 1 112479999999999988889988776664 1 233566776666554 3 35689999999
Q ss_pred hhcCC
Q 002864 447 WTKQK 451 (872)
Q Consensus 447 W~~~~ 451 (872)
|...-
T Consensus 281 w~~A~ 285 (366)
T PF10460_consen 281 WGVAL 285 (366)
T ss_pred HHHHH
Confidence 98766
No 14
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=97.05 E-value=0.00037 Score=62.84 Aligned_cols=43 Identities=23% Similarity=0.477 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhcCcccc-----------CccchhhhhhHHHHHHHHHHHhh
Q 002864 297 VATVVAHELAHQWFGNLVTM-----------EWWTHLWLNEGFATWVSYLAADS 339 (872)
Q Consensus 297 ~~~~iaHElaHqWfGn~vt~-----------~~w~d~WL~EGfa~y~~~~~~~~ 339 (872)
...+++||+.|.|-+-.+.| ..-+.+|+-|||++|++.+.+.+
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~R 57 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVR 57 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHH
Confidence 45789999999999755544 44567999999999999886655
No 15
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=96.69 E-value=0.096 Score=57.37 Aligned_cols=303 Identities=17% Similarity=0.148 Sum_probs=146.3
Q ss_pred EEEEEEEeeccCCCCCCCeeEEEEEEEECc--ccc-----eeeEEeeccceEEEecccccccccCCCCCCceEEecCCce
Q 002864 464 KLELEQSQFLSSGSPGDGQWIVPITLCCGS--YDV-----CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 536 (872)
Q Consensus 464 ~i~l~Q~rf~~~~~~~~~~w~iPi~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 536 (872)
+++++|......+.....+|.|||.+..-+ +.. ...+.++..++++.+.++. .. ...-++-+.+
T Consensus 6 ~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~-------~~--PvpSllRgFS 76 (367)
T PF11940_consen 6 TLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVS-------EK--PVPSLLRGFS 76 (367)
T ss_dssp EEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES----------S----EEEESTTG-
T ss_pred EEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCC-------CC--ceeehhcCcc
Confidence 578999987777777777999999986432 222 1235678888999997642 22 4667788888
Q ss_pred eEEEEEcCHH--HHHHHHHHHHcCCCChhhHHH--------HHHHHHHHHHcC-CCCH-HHHHHHHHhcc--CCCcHHHH
Q 002864 537 GFYRVKYDKD--LAARLGYAIEMKQLSETDRFG--------ILDDHFALCMAR-QQTL-TSLLTLMASYS--EETEYTVL 602 (872)
Q Consensus 537 gyyRV~Yd~~--~w~~l~~~l~~~~i~~~~ra~--------li~D~~~la~~g-~l~~-~~~l~l~~~l~--~e~~~~~w 602 (872)
-+-++.||-. ...-|... +. +.-+|.. +|.+...-..+| .... ..+++.++.+- .+.+...-
T Consensus 77 APV~l~~~~s~~eL~~L~~~---D~-D~FnRWdA~Q~L~~~~l~~~~~~~~~~~~~~~~~~~i~a~~~~L~d~~~d~a~~ 152 (367)
T PF11940_consen 77 APVKLEYDYSDEELAFLAAH---DS-DPFNRWDAAQTLATRILLALIADKQAGKPLALSAALIEAFRALLADDDLDPAFK 152 (367)
T ss_dssp SSSEEE----HHHHHHHHHH----S-SHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHH-SSS-HHHH
T ss_pred cceEecCCCCHHHHHHHHHc---CC-ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHcCCCCCHHHH
Confidence 8888887643 33333332 11 2233331 112222222222 1112 23555554432 22333333
Q ss_pred HHHHHH--HHHHHHHHhccChhHH--------HHHHHHHHHHHHHHHHhcCCcc---CCCCCHHHHHHHHHHHHHHHhcC
Q 002864 603 SNLITI--SYKIGRIAADARPELL--------DYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLG 669 (872)
Q Consensus 603 ~~~~~~--l~~l~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~il~~ac~~g 669 (872)
..++.. ...|...+..-+|+.. ..+-.-+...+..+|+++.-.. ...+....+.||..++..++..+
T Consensus 153 A~~L~LPs~~~l~~~~~~iDp~~i~~ar~~l~~~la~~l~~~l~~~y~~~~~~~~y~~~~~~~g~RaLkn~~L~yL~~~~ 232 (367)
T PF11940_consen 153 ALLLTLPSESELAEQMENIDPDAIHAAREALRRALAQALRDELLALYQALAATGPYSPDAEAAGRRALKNLCLSYLAAAD 232 (367)
T ss_dssp HHHTS---HHHHCTT-SSB-HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHTTTTT-SHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHccCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 332221 2233322221112221 2222223333455566651111 12234456899999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHH
Q 002864 670 HKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIV 749 (872)
Q Consensus 670 ~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d~~~l 749 (872)
.++..+.|.++|+.-.+- --|-..+.+++..-....++..+..+++|++..-.-+|.-.+.|.+...| .+
T Consensus 233 ~~~~~~la~~qy~~A~nM--------TD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~LV~dKWFalQA~~~~~~--~l 302 (367)
T PF11940_consen 233 DPEAAELAQEQYKSADNM--------TDRLAALSALVNSDSPEREEALEDFYERWKDDPLVMDKWFALQASSPSPD--TL 302 (367)
T ss_dssp CTHHHHHHHHHHHHSSSH--------HHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHHHHHHHHHHHHT--STT--HH
T ss_pred chHHHHHHHHHHHhCCCh--------hHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChHHHHHHHHHHhCCCCcc--HH
Confidence 999999999999975210 12222223332211112334577777888877777899999999876654 44
Q ss_pred HHHHHHhhcCcCCcccceeeee-eccc-cHHHHHHHHHHHHHHHHHHhCCC
Q 002864 750 LEVLNFLLSSEVRSQDAVYGLA-VSIE-GRETAWKWLKDNWDHISKTWGSG 798 (872)
Q Consensus 750 ~~~L~~~l~~~i~~qd~~~~~~-v~~~-g~~~~~~fl~~n~~~i~~~~~~~ 798 (872)
.+.-.+.-++. |. -..| .|.++-.|...|-..++..-|++
T Consensus 303 ~~V~~L~~Hp~---------F~~~NPNrvRaLig~Fa~~N~~~FH~~dG~G 344 (367)
T PF11940_consen 303 ERVKKLMQHPA---------FDLKNPNRVRALIGAFAQANPVQFHAADGSG 344 (367)
T ss_dssp HHHHHHTTSTT---------TTTT-HHHHHHHHHHHHHC-HHHHT-TTSHH
T ss_pred HHHHHHhcCCC---------CCCCCCcHHHHHHHHHHhcChhhhcCCCCcH
Confidence 44433333332 22 2234 66666677767777666655443
No 16
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=95.90 E-value=0.005 Score=56.18 Aligned_cols=39 Identities=28% Similarity=0.239 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCcccc--CccchhhhhhHHHHHHHHHHH
Q 002864 299 TVVAHELAHQWFGNLVTM--EWWTHLWLNEGFATWVSYLAA 337 (872)
Q Consensus 299 ~~iaHElaHqWfGn~vt~--~~w~d~WL~EGfa~y~~~~~~ 337 (872)
.+++||.+||=..|.=-. ---.-.|+.||||+|+|-.-+
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCcc
Confidence 589999999998764211 111238999999999996644
No 17
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=94.74 E-value=0.41 Score=47.87 Aligned_cols=111 Identities=25% Similarity=0.381 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCccchhhhhhHHHHHHHHHHHhhhCcchhhHHHHHHHHHHhhhccccCCCCceeeec
Q 002864 294 KQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEV 373 (872)
Q Consensus 294 ~~~~~~~iaHElaHqWfGn~vt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 373 (872)
+..+..+|.||++|-|=.+.-. -.--||-||+|.|+-..+ -..| .....|...
T Consensus 93 ~~Ei~Gvl~HE~~H~~Q~~~~~---~~P~~liEGIADyVRl~a--G~~~--------------------~~w~~p~~~-- 145 (205)
T PF04450_consen 93 RDEIIGVLYHEMVHCWQWDGRG---TAPGGLIEGIADYVRLKA--GYAP--------------------PHWKRPGGG-- 145 (205)
T ss_pred HHHHHHHHHHHHHHHhhcCCCC---CCChhheecHHHHHHHHc--CCCC--------------------ccccCCCCC--
Confidence 4678899999999976544322 123589999999997552 0000 001111110
Q ss_pred CCchhhhhcccceeechhhHHHHHHHH-hhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCcHHHHHHH
Q 002864 374 NHTGEIDEIFDAISYRKGASVIRMLQN-YLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS 446 (872)
Q Consensus 374 ~~~~~~~~~f~~i~Y~Kga~vl~mL~~-~lG~~~F~~~lr~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~ 446 (872)
..++ -.|.-.|.+|.-|+. ..|+. |-+-|..=+.+..+ +.+++|.. .+|++++++++.
T Consensus 146 -------~~wd-~gY~~TA~FL~wle~~~~~~g-fV~~LN~~m~~~~y---~~~~~~~~---l~G~~v~~LW~e 204 (205)
T PF04450_consen 146 -------DSWD-DGYRTTARFLDWLEDNRYGKG-FVRRLNEAMRRDKY---SSDDFWKE---LLGKPVDELWAE 204 (205)
T ss_pred -------CCcc-cccHHHHHHHHHHHhcccCcc-HHHHHHHHHhhCCC---CcHhHHHH---HHCcCHHHHHhh
Confidence 1223 378899999999999 66643 44445444444444 45565554 468889888764
No 18
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=92.31 E-value=0.45 Score=47.60 Aligned_cols=103 Identities=15% Similarity=0.189 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcceeecCCCCCc-----ccccccccccccccccc-cCCCChHHHHHHHHHHHHHHHHHH
Q 002864 235 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAG-----AMENYGLVTYRETALLY-DDQHSAAANKQRVATVVAHELAHQ 308 (872)
Q Consensus 235 ~~~~~l~~~e~~~g~~yP~~kld~v~~p~~~~g-----amE~~gli~~~e~~ll~-~~~~~~~~~~~~~~~~iaHElaHq 308 (872)
.+.+.+....+.+ |.+.+++..+|.-+.+ .+...|...+....+++ -+. ......+..+||||+.|.
T Consensus 4 ~i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~---~~~~~~l~~~iaHE~hH~ 76 (195)
T PF10026_consen 4 IIEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPN---DYSLEELPALIAHEYHHN 76 (195)
T ss_pred HHHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCC---cccHHHHHHHHHHHHHHH
Confidence 3445555555554 4457777655422222 11223333344433333 222 123347889999999998
Q ss_pred HhcCcccc----CccchhhhhhHHHHHHHHHHHhhhC-cch
Q 002864 309 WFGNLVTM----EWWTHLWLNEGFATWVSYLAADSLF-PEW 344 (872)
Q Consensus 309 WfGn~vt~----~~w~d~WL~EGfa~y~~~~~~~~~~-~~~ 344 (872)
+--..+.. ..--|.-+.||+|.+++.....+.. +.|
T Consensus 77 ~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~~~~w 117 (195)
T PF10026_consen 77 CRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEYLGPW 117 (195)
T ss_pred HHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCCCchh
Confidence 64333321 1223677899999999977665554 443
No 19
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=91.62 E-value=0.78 Score=46.15 Aligned_cols=114 Identities=23% Similarity=0.230 Sum_probs=68.6
Q ss_pred EcCCchhhHHHHHHHHHHHHHHHHHHhCCCC------------CCCCcceeecCCCCCcc----cccccccccccc----
Q 002864 221 CQVGKANQGKFALNVAVKTLELYKEYFAVPY------------SLPKLDMIAIPDFAAGA----MENYGLVTYRET---- 280 (872)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~y------------P~~kld~v~~p~~~~ga----mE~~gli~~~e~---- 280 (872)
..|...+....-|..+.++-.|-++.++.|= |+--..+.+.|.++... .--.|++.|+.-
T Consensus 72 ~dp~~d~rLr~rL~~A~aiR~fAseeL~LPDN~SYR~YadIgRp~vvwnVFAaPelSl~p~TwCFpv~GCV~YRGYysr~ 151 (376)
T COG4324 72 RDPSTDERLRARLTSASAIRRFASEELALPDNSSYRSYADIGRPDVVWNVFAAPELSLTPITWCFPVFGCVPYRGYYSRK 151 (376)
T ss_pred hCCCccHHHHHHHhhHHHHHHHHHHhccCCCCcceeeeeccCCcceeeeeccCcccccceeeeeeeeecceecccchhhh
Confidence 3444555666667788888888888887542 33344555667665322 222566666531
Q ss_pred ---------------------------cccccCCCChH--HHHHHHHHHHHHHHHHHHhcCccccCccchhhhhhHHHHH
Q 002864 281 ---------------------------ALLYDDQHSAA--ANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATW 331 (872)
Q Consensus 281 ---------------------------~ll~~~~~~~~--~~~~~~~~~iaHElaHqWfGn~vt~~~w~d~WL~EGfa~y 331 (872)
..+-+|-.++. -....++.+|-||+|||=|.-- +|.=+||+||+.
T Consensus 152 aA~a~Aa~lraqG~DVyV~Gv~AYSTLGwFdDPlLstmlr~dd~~lA~LIFHELAHQk~Y~~------~DtAFNEsFAta 225 (376)
T COG4324 152 AAAASAAELRAQGLDVYVSGVTAYSTLGWFDDPLLSTMLRQDDTYLASLIFHELAHQKIYVN------NDTAFNESFATA 225 (376)
T ss_pred hHHHhHHHHHhcCCceeeecccceecccccccHHHHHHhcCChHHHHHHHHHHHhhheEeec------CcchHhHHHHHH
Confidence 00111111111 1245688999999999976422 355689999999
Q ss_pred HHHHHHhhh
Q 002864 332 VSYLAADSL 340 (872)
Q Consensus 332 ~~~~~~~~~ 340 (872)
.+...+++.
T Consensus 226 VEt~Gvr~W 234 (376)
T COG4324 226 VETSGVRKW 234 (376)
T ss_pred HHHHhHHHH
Confidence 998877654
No 20
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=88.81 E-value=2.1 Score=45.86 Aligned_cols=115 Identities=23% Similarity=0.266 Sum_probs=68.4
Q ss_pred EEcCCchhhHHHHHHHHHHHHHHHHHHhCCCC------------CCCCcceeecCCCCCcccc----ccccccccc----
Q 002864 220 YCQVGKANQGKFALNVAVKTLELYKEYFAVPY------------SLPKLDMIAIPDFAAGAME----NYGLVTYRE---- 279 (872)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~y------------P~~kld~v~~p~~~~gamE----~~gli~~~e---- 279 (872)
...|...+..+.-|..+.++=.|-.+.+|.|= |+--..+++.|.++.-.-. -.|++.|+.
T Consensus 39 l~dp~~~~~lr~rL~~~~~iR~FA~~~L~Lpdn~sY~~YadL~Rp~vvWnV~Aap~~sl~~~~WcFPi~Gcv~YrGyF~~ 118 (337)
T PF10023_consen 39 LADPATPPALRARLRLAQQIRRFASEELGLPDNGSYRSYADLDRPYVVWNVFAAPEFSLEPKTWCFPIVGCVPYRGYFDE 118 (337)
T ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhcCCCcEEEEEEecCcccCCcceeeccccccccccCcCCH
Confidence 34455566667777888888888888887442 3333456677766422211 134444442
Q ss_pred ---------------------------ccccccCCCChH--HHHHHHHHHHHHHHHHHHhcCccccCccchhhhhhHHHH
Q 002864 280 ---------------------------TALLYDDQHSAA--ANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFAT 330 (872)
Q Consensus 280 ---------------------------~~ll~~~~~~~~--~~~~~~~~~iaHElaHqWfGn~vt~~~w~d~WL~EGfa~ 330 (872)
=..+-||-.++. -....++.+|-||+|||=+. .+ +|.=+||+||+
T Consensus 119 ~~A~~~a~~L~~~GlDv~v~gV~AYSTLGwF~DPlLSt~l~~~~~~LA~LIfHELaHq~~Y----v~--~dt~FNEsfAt 192 (337)
T PF10023_consen 119 ADARAEAAELRAQGLDVYVGGVPAYSTLGWFDDPLLSTMLRYPDGELARLIFHELAHQTLY----VK--GDTAFNESFAT 192 (337)
T ss_pred HHHHHHHHHHHHcCCceeEecccccccccccCCcccccccCCCchHHHHHHHHHHhhceee----cC--CCchhhHHHHH
Confidence 111112211111 12346899999999999432 11 35668999999
Q ss_pred HHHHHHHhhh
Q 002864 331 WVSYLAADSL 340 (872)
Q Consensus 331 y~~~~~~~~~ 340 (872)
+.+....++.
T Consensus 193 fVe~~G~~~w 202 (337)
T PF10023_consen 193 FVEREGARRW 202 (337)
T ss_pred HHHHHHHHHH
Confidence 9998866654
No 21
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.68 E-value=7 Score=46.45 Aligned_cols=197 Identities=18% Similarity=0.180 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhH-
Q 002864 546 DLAARLGYAIEMKQLSETDRFGILDDHFALCMA-RQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPEL- 623 (872)
Q Consensus 546 ~~w~~l~~~l~~~~i~~~~ra~li~D~~~la~~-g~l~~~~~l~l~~~l~~e~~~~~w~~~~~~l~~l~~~~~~~~~~~- 623 (872)
.....|.+.+..+.++..++++++.-+.+++.. -.--.+.+++|++.=.-..+...+.+++-.+..+.+......+..
T Consensus 357 ~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~ 436 (574)
T smart00638 357 PALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP 436 (574)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 456667777777889999999998887777643 333445566666543445677888888888887776554322221
Q ss_pred ---HHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhh
Q 002864 624 ---LDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKA 700 (872)
Q Consensus 624 ---~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~ 700 (872)
...+..|+.+.+....++ . +..-+...++.++..|+...+.. +..++.+ ....|+.+|-.
T Consensus 437 ~~~~~~~~~~l~~~l~~~~~~-------~----~~~~~~~~LkaLGN~g~~~~i~~----l~~~l~~--~~~~~~~iR~~ 499 (574)
T smart00638 437 DFVLEELLKYLHELLQQAVSK-------G----DEEEIQLYLKALGNAGHPSSIKV----LEPYLEG--AEPLSTFIRLA 499 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHhc-------C----CchheeeHHHhhhccCChhHHHH----HHHhcCC--CCCCCHHHHHH
Confidence 234455555544443321 1 12235678888999999877644 4444432 34567888864
Q ss_pred hheeeeeecccCCHHHHHHHHHHHHcCCCHH-HHHHHH-HHhCCCCCHHHHHHHHHHhhcC
Q 002864 701 AYVAVMQKVSASDRSGYESLLRVYRETDLSQ-EKTRIL-SSLASCPDVNIVLEVLNFLLSS 759 (872)
Q Consensus 701 vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~-ek~~il-~aL~c~~d~~~l~~~L~~~l~~ 759 (872)
..-++-..+..-....-+.++..|.+...+. -|...+ ..|-|-++...++++.+.+..+
T Consensus 500 Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E 560 (574)
T smart00638 500 AILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKE 560 (574)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhc
Confidence 4333332222345667888999999866554 455544 4445668999999888877543
No 22
>PRK04860 hypothetical protein; Provisional
Probab=87.68 E-value=1.2 Score=42.67 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCccccc--ccccccccccccccCCCChHHHHHHHHHHHHHHHHHHH
Q 002864 232 ALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN--YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 309 (872)
Q Consensus 232 ~l~~~~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE~--~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 309 (872)
+...+...+..-+++||.|+|.|+..+-. -...||+.. .+-|-+... ++.+ .....+..+|+||+||.|
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~--R~rtaG~~~l~~~~I~~Np~--ll~~-----~~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYTQ--RGTSAGTAWLQSNEIRLNPV--LLLE-----NQQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEee--cchhhcchhHhcCCeeeCHH--HHhh-----CcHHHHHhHHHHHHHHHH
Confidence 44566677788889999888876654432 122244422 223333332 2221 234567899999999987
Q ss_pred h
Q 002864 310 F 310 (872)
Q Consensus 310 f 310 (872)
-
T Consensus 76 ~ 76 (160)
T PRK04860 76 V 76 (160)
T ss_pred H
Confidence 4
No 23
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=83.37 E-value=6 Score=39.82 Aligned_cols=92 Identities=21% Similarity=0.328 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHHh
Q 002864 231 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 310 (872)
Q Consensus 231 ~~l~~~~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 310 (872)
.+.....+.++.|++.+|.++ +++.+=-.-.. .|....-|.|++.-.-+.+++ .-+..+|+||+||--.
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~~--~~i~ir~~ksr-WGsc~~~~~I~ln~~L~~~P~--------~~idYVvvHEL~Hl~~ 177 (205)
T PF01863_consen 109 QAKEYLPERLKKYAKKLGLPP--PKIKIRDMKSR-WGSCSSKGNITLNWRLVMAPP--------EVIDYVVVHELCHLRH 177 (205)
T ss_pred HHHHHHHHHHHHHHHHcCCCc--ceEEEeehhhc-cccCCCCCcEEeecccccCCc--------cHHHHHHHHHHHHhcc
Confidence 345566677788888888643 34444322222 454555677887776333333 3478999999999876
Q ss_pred cCccccCccchhhhhhHHHHHHHHHHHhhhCcchhhHHH
Q 002864 311 GNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 349 (872)
Q Consensus 311 Gn~vt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~ 349 (872)
-| --...| ..+++..|+|.....
T Consensus 178 ~n-----Hs~~Fw-----------~~v~~~~Pd~k~~~~ 200 (205)
T PF01863_consen 178 PN-----HSKRFW-----------ALVEKYMPDYKERRK 200 (205)
T ss_pred CC-----CCHHHH-----------HHHHHHCcCHHHHHH
Confidence 44 333344 345567788765443
No 24
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=80.63 E-value=1.9 Score=40.85 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 002864 295 QRVATVVAHELAHQWFG 311 (872)
Q Consensus 295 ~~~~~~iaHElaHqWfG 311 (872)
..+..+|.||+||.+..
T Consensus 57 ~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 57 DRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 46778999999999974
No 25
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=73.61 E-value=36 Score=40.87 Aligned_cols=195 Identities=14% Similarity=0.126 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccC----
Q 002864 546 DLAARLGYAIEMKQLSETDRFGILDDHFALC-MARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADAR---- 620 (872)
Q Consensus 546 ~~w~~l~~~l~~~~i~~~~ra~li~D~~~la-~~g~l~~~~~l~l~~~l~~e~~~~~w~~~~~~l~~l~~~~~~~~---- 620 (872)
.....|.+.+..+.++..+.+++|.-+.... +.-.--.+.+++|++.-....+..++.+++-.+..+.+......
T Consensus 395 ~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 3455666777777888888888876665554 22222223333444433334667788888888877766554320
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCC
Q 002864 621 ------PELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLP 694 (872)
Q Consensus 621 ------~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~ 694 (872)
....+.+..++.+.+....++ .+..-+...++.+...|+...+ ..+..+..+ ....|
T Consensus 475 ~~~~~~~~~~~~~~~~l~~~l~~~~~~-----------~~~~~~~~~LkaLgN~g~~~~i----~~l~~~i~~--~~~~~ 537 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQELKEAVSR-----------GDEEEKIVYLKALGNLGHPESI----PVLLPYIEG--KEEVP 537 (618)
T ss_dssp ------SS--GGGTHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHHHT-GGGH----HHHHTTSTT--SS-S-
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhc-----------cCHHHHHHHHHHhhccCCchhh----HHHHhHhhh--ccccc
Confidence 112222333333333311111 1235566778888899987554 445556554 22678
Q ss_pred cchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHH-HHHHHHH-hCCCCCHHHHHHHHHHhh
Q 002864 695 PDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KTRILSS-LASCPDVNIVLEVLNFLL 757 (872)
Q Consensus 695 ~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~e-k~~il~a-L~c~~d~~~l~~~L~~~l 757 (872)
..+|-+..-++.+.+..-.....+.++..|.+.....| |...+.. |-|-++...++++...+-
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~ 602 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLW 602 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 88887544444322333355779999999998776554 4443333 356688888988887764
No 26
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=73.33 E-value=2.1e+02 Score=35.10 Aligned_cols=129 Identities=15% Similarity=0.198 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhcCcc-ccCccchhhhhhHHHHHHHHHHHhhhCc---chhh---HHHHHHHHHHhhhccccCCCCceee
Q 002864 299 TVVAHELAHQWFGNLV-TMEWWTHLWLNEGFATWVSYLAADSLFP---EWKI---WTQFLDECTEGLRLDGLAESHPIEV 371 (872)
Q Consensus 299 ~~iaHElaHqWfGn~v-t~~~w~d~WL~EGfa~y~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~d~~~~~~p~~~ 371 (872)
-.+-|||+|.+=|..+ .-..+.+.| |-=+|.++++..+..... .|-. ........+.+. .+ ...|
T Consensus 238 W~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~-i~---~~~~--- 309 (775)
T PF03272_consen 238 WGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIAL-ID---NNKP--- 309 (775)
T ss_pred chhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHH-Hh---cCCC---
Confidence 4688999999988877 444566888 777888888776552111 1111 001111111111 01 1111
Q ss_pred ecCCchhhhhcccce-eechhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCC--ChHHHHHHHHhc-cCCcHHHHHHHh
Q 002864 372 EVNHTGEIDEIFDAI-SYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNA--KTEDLWAALEEG-SGEPVNKLMNSW 447 (872)
Q Consensus 372 ~~~~~~~~~~~f~~i-~Y~Kga~vl~mL~~~lG~~~F~~~lr~yl~~~~~~~~--~~~df~~~l~~~-~~~~l~~~~~~W 447 (872)
|+.. .-.|=..+..|+...-|++.|+..=+.|=+. .-.+. ..-.+++-+... ++.|+..+++-|
T Consensus 310 -----------~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~-~~~~~~~~~~~i~d~l~~~~~~~D~~p~~~l~ 377 (775)
T PF03272_consen 310 -----------FDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQL-NTNGFNPNDHQIFDWLASLYSGYDFTPYFQLV 377 (775)
T ss_pred -----------cccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-ccCCCCcccccHHHHHHHhhcCCchHhHHHHh
Confidence 1111 1235455555888889999998877776665 22222 222333444455 899999999988
No 27
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=72.23 E-value=4.3 Score=43.88 Aligned_cols=31 Identities=39% Similarity=0.642 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhcCccccCccchhhhhhHHHHHHHHHHHhh
Q 002864 297 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 339 (872)
Q Consensus 297 ~~~~iaHElaHqWfGn~vt~~~w~d~WL~EGfa~y~~~~~~~~ 339 (872)
.-.++|||+|||= | ...|+=|.|+++++..+
T Consensus 196 ~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~ 226 (318)
T PF12725_consen 196 LPFTICHELAHQL-G-----------FASEDEANFIAYLACIN 226 (318)
T ss_pred ccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhc
Confidence 4579999999994 2 24888999999886654
No 28
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=69.83 E-value=4.7 Score=44.62 Aligned_cols=109 Identities=23% Similarity=0.271 Sum_probs=62.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCC--cceeecCCCCCcccccccccccccccccccCCCChH-HHHHHHHH
Q 002864 223 VGKANQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAA-ANKQRVAT 299 (872)
Q Consensus 223 ~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k--ld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~-~~~~~~~~ 299 (872)
++....+..+-..+.++.+||.++|| .-.++. +.++..-.+ | -++.........|+|.+..... ........
T Consensus 265 ~~~~~a~~dAh~~~g~vyD~yk~~fg-r~S~Dn~g~~l~s~vHy--G--~~ynNAfWdG~qMvyGDGDG~~f~~~S~sLD 339 (507)
T COG3227 265 PSSDEAAVDAHYNAGKVYDYYKNTFG-RNSYDNNGMPLVSTVHY--G--KNYNNAFWDGDQMVYGDGDGSFFTPFSGSLD 339 (507)
T ss_pred ccchhhhHHHHhhcchHHHHHHHHhc-ccCcCCCCCceEEEEee--c--cccccccccCceeEeecCCcceecccccccc
Confidence 44445566777888999999999999 334433 444443332 2 1222233333345554432110 01111246
Q ss_pred HHHHHHHHH---HhcCccccCccchhhhhhHHHHHHHHHHHh
Q 002864 300 VVAHELAHQ---WFGNLVTMEWWTHLWLNEGFATWVSYLAAD 338 (872)
Q Consensus 300 ~iaHElaHq---WfGn~vt~~~w~d~WL~EGfa~y~~~~~~~ 338 (872)
++||||.|. .--+++.-.... =|||+|+.-+...+..
T Consensus 340 VvAHElTHGvtq~tA~L~Y~~qsG--ALNEsfSDvfG~~i~~ 379 (507)
T COG3227 340 VVAHELTHGVTQQTAGLIYRGQSG--ALNESFSDVFGTLIEQ 379 (507)
T ss_pred eehhhhcchhhhhccCceecCCCC--chhhHHHHHHHHHHHH
Confidence 899999994 445666655544 3899999999855433
No 29
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=63.25 E-value=9.5 Score=36.19 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 002864 227 NQGKFALNVAVKTLELYKEYFAVPYSLP 254 (872)
Q Consensus 227 ~~~~~~l~~~~~~l~~~e~~~g~~yP~~ 254 (872)
..+..+...+.++.+||.+.|| .-+++
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD 93 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSID 93 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STT
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcC
Confidence 4456677788999999999999 56665
No 30
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=63.22 E-value=11 Score=37.22 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCccccCccchhhhhhHHHHHHHHHHHhh
Q 002864 297 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 339 (872)
Q Consensus 297 ~~~~iaHElaHqWfGn~vt~~~w~d~WL~EGfa~y~~~~~~~~ 339 (872)
.-.++|||+.|-|.- ..--.--+.++-|||++.+++.+++.
T Consensus 93 ~gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~ 133 (212)
T PF12315_consen 93 TGSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLES 133 (212)
T ss_pred HhhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhh
Confidence 357899999999962 11111226789999999999987764
No 31
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=61.77 E-value=7.7 Score=43.22 Aligned_cols=53 Identities=25% Similarity=0.297 Sum_probs=36.1
Q ss_pred CCCCcceeecCCCCCcccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHH
Q 002864 252 SLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 309 (872)
Q Consensus 252 P~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 309 (872)
|-..++++.|.+-...|...+|.-++-.+.++...+ +...++.+||||++|-=
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae-----~esElagViAHEigHv~ 142 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE-----NESELAGVIAHEIGHVA 142 (484)
T ss_pred CCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC-----CHHHHHHHHHHHHHHHh
Confidence 445588888877666777776665555554554333 33468999999999953
No 32
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=55.23 E-value=66 Score=32.83 Aligned_cols=93 Identities=20% Similarity=0.303 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHH
Q 002864 230 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 309 (872)
Q Consensus 230 ~~~l~~~~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 309 (872)
+.+.+.....++.|.+.+|.++.--++. ..-.. .|.-...|.|.+... +..- ...-+..+++||+||-=
T Consensus 119 ~~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~k~~-WGScs~~~~i~~~~~-l~~~-------p~~~i~YVvvHELaHLk 187 (223)
T COG1451 119 EILREILEIRLKEYAKKLGVPPRAIKLK--NMKRR-WGSCSKAGEIRFNWR-LVMA-------PEEVIDYVVVHELAHLK 187 (223)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceeee--eccce-eeeecCCCcEEeehh-hhcC-------CHHHHHHHHHHHHHHHh
Confidence 3555677777888899999766533332 21111 233333344444433 2211 12457899999999998
Q ss_pred hcCccccCccchhhhhhHHHHHHHHHHHhhhCcchhhHHH
Q 002864 310 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 349 (872)
Q Consensus 310 fGn~vt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~ 349 (872)
..|. -...| ..++.++|++.....
T Consensus 188 e~nH-----s~~Fw-----------~lv~~~~P~~~~~~~ 211 (223)
T COG1451 188 EKNH-----SKRFW-----------RLVEKYMPDYRAAKR 211 (223)
T ss_pred hhhc-----cHHHH-----------HHHHHHCCChHHHHH
Confidence 8772 22333 345667788765444
No 33
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=55.16 E-value=62 Score=28.05 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=32.7
Q ss_pred CCCEEEEEec-Cce--eeEEEEEeccCCCCccccCeeEEEecCCeEEEEEeCCCcCCceEEEEEEEEe
Q 002864 45 DTKFIVLNAA-DLT--INNRSVSFTNKVSSKALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEG 109 (872)
Q Consensus 45 ~~~~i~L~~~-~l~--i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~L~~g~~~L~i~y~g 109 (872)
+..+|.|... .++ ...+.+.+.++ ..+.......+.....+++.++.+|++|.|+|.-+--+
T Consensus 18 ~P~~v~L~F~e~v~~~~s~v~v~~~~g---~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs 82 (97)
T PF04234_consen 18 APEEVTLTFSEPVEPGFSSVTVTDPDG---KRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVS 82 (97)
T ss_dssp --SSEEEEESS---CCC-EEEEEEEEE---TTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEE
T ss_pred CCCEEEEEeCCCCccCccEEEEEcCCC---ceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEe
Confidence 3455666654 244 66666655322 23333334444466799999999999999987655433
No 34
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=54.22 E-value=19 Score=34.41 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 002864 294 KQRVATVVAHELAHQWFG 311 (872)
Q Consensus 294 ~~~~~~~iaHElaHqWfG 311 (872)
...+..+|.||++|.|..
T Consensus 57 ~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 57 EEELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 457889999999999974
No 35
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=53.75 E-value=12 Score=33.35 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhcCcc
Q 002864 297 VATVVAHELAHQWFGNLV 314 (872)
Q Consensus 297 ~~~~iaHElaHqWfGn~v 314 (872)
...+++|||+|.+++..-
T Consensus 42 ~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 42 QRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 467999999999997654
No 36
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=53.62 E-value=39 Score=31.93 Aligned_cols=47 Identities=23% Similarity=0.429 Sum_probs=33.7
Q ss_pred ccccCeeEEEecCCeEEEEEeCCCcCCc-eEEEEEEEEeeecCCCcceEE
Q 002864 72 KALEPTKVELVEADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYR 120 (872)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~i~l~~~L~~g-~~~L~i~y~g~~~~~~~G~~~ 120 (872)
..+....+..+.+++.+.|.+++|++|| .++|.+ ...-+....|.|.
T Consensus 75 ~~ipl~~v~~~~~~~~i~I~f~~PV~pG~tv~V~l--~~v~NP~~~G~Y~ 122 (146)
T PF10989_consen 75 ESIPLAEVEWDEDGRTITITFDEPVPPGTTVTVVL--SPVRNPRSGGTYQ 122 (146)
T ss_pred CccCceEEEEcCCCCEEEEEeCCCCCCCCEEEEEE--EeeeCCCCCCeEE
Confidence 4455567888999999999999999999 555555 4433444557665
No 37
>PRK04351 hypothetical protein; Provisional
Probab=51.86 E-value=14 Score=35.04 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHH
Q 002864 294 KQRVATVVAHELAHQ 308 (872)
Q Consensus 294 ~~~~~~~iaHElaHq 308 (872)
...+..+|+||++|-
T Consensus 58 ~~~l~~vv~HElcH~ 72 (149)
T PRK04351 58 LEELIGIIKHELCHY 72 (149)
T ss_pred HHHHHhhHHHHHHHH
Confidence 467889999999995
No 38
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=50.25 E-value=29 Score=28.97 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHH
Q 002864 655 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 734 (872)
Q Consensus 655 ~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~ 734 (872)
...|..++..++..+.++.+....+++ .+ -++.+|..+..++.. .|+.+.+..|.+.+.++.+..-|.
T Consensus 14 ~~vr~~a~~~L~~~~~~~~~~~L~~~l----~d-----~~~~vr~~a~~aL~~---i~~~~~~~~L~~~l~~~~~~~vr~ 81 (88)
T PF13646_consen 14 PQVRAEAARALGELGDPEAIPALIELL----KD-----EDPMVRRAAARALGR---IGDPEAIPALIKLLQDDDDEVVRE 81 (88)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHH----TS-----SSHHHHHHHHHHHHC---CHHHHTHHHHHHHHTC-SSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHH----cC-----CCHHHHHHHHHHHHH---hCCHHHHHHHHHHHcCCCcHHHHH
Confidence 467778888888888775555444443 33 136788765554432 467778888888888777766677
Q ss_pred HHHHHhC
Q 002864 735 RILSSLA 741 (872)
Q Consensus 735 ~il~aL~ 741 (872)
..+.|||
T Consensus 82 ~a~~aL~ 88 (88)
T PF13646_consen 82 AAAEALG 88 (88)
T ss_dssp HHHHHHH
T ss_pred HHHhhcC
Confidence 7888775
No 39
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.34 E-value=2.6e+02 Score=34.45 Aligned_cols=137 Identities=15% Similarity=0.100 Sum_probs=73.5
Q ss_pred ChhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Q 002864 561 SETDRFGILDDHFALCMARQQTL-TSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSA 639 (872)
Q Consensus 561 ~~~~ra~li~D~~~la~~g~l~~-~~~l~l~~~l~~e~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 639 (872)
|...|-|+-.=.-.-..+.+... ..+++-++++-+.++...|..++-.|..+-+.++....+...-+..-+..++..++
T Consensus 102 p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il 181 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDIL 181 (1010)
T ss_pred chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 66667766544434444444422 45777777777788899999999999888777652212233333333333333333
Q ss_pred HhcCCccCCCCCHHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHhhc-------CC---CCCCCCcchhh
Q 002864 640 EKLGWDSKPGESHLDALLRGEIF---TALALLGHKETLNEASKRFHAFLA-------DR---TTPLLPPDIRK 699 (872)
Q Consensus 640 ~~lg~~~~~~~~~~~~~lr~~il---~~ac~~g~~~c~~~A~~~f~~~~~-------~~---~~~~i~~~lr~ 699 (872)
+.. ..--..++..--++..+|+ ..+|.+..+.-. .+.+.|..|+. .+ ..-.++|+.|+
T Consensus 182 ~~~-~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L-~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~ 252 (1010)
T KOG1991|consen 182 QIF-NGLLSQESYQSVELQKLILKIFKSLIYYELPLEL-SAPETFTSWMELFLSILNRPVPVEVLSLDPEDRS 252 (1010)
T ss_pred HHH-HhhccccchHHHHHHHHHHHHHHHHHHHhCCHHh-hCchhHHHHHHHHHHHHcCCCChhcccCChhhcc
Confidence 221 0111223333344444444 466666654322 34556666652 22 22347788886
No 40
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=48.06 E-value=24 Score=35.87 Aligned_cols=70 Identities=21% Similarity=0.299 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccc----cccccccccccCCCChHHHHHHHHHHHHHHHHHHHhcCc
Q 002864 238 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGL----VTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNL 313 (872)
Q Consensus 238 ~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE~~gl----i~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~ 313 (872)
+.++-+-+..|.+.|.+++-++-.|. ..|.-..+. |.+... ++.. .....+..+||||++|-.-++.
T Consensus 35 ~~v~~l~~~~~~~~~~~~v~v~~~~~--~NA~~~g~~~~~~I~v~~~-ll~~------~~~~el~aVlaHElgH~~~~h~ 105 (226)
T PF01435_consen 35 RIVEELARRAGLGIPPPRVYVIDSPS--PNAFATGGGPRKRIVVTSG-LLES------LSEDELAAVLAHELGHIKHRHI 105 (226)
T ss_dssp HHHHHHHHHHHCTSS--EEEEE--SS--EEEEEETTTC--EEEEEHH-HHHH------SSHHHHHHHHHHHHHHHHTTHC
T ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCC--CcEEEEccCCCcEEEEeCh-hhhc------ccHHHHHHHHHHHHHHHHcCCc
Confidence 33333334445566665555554454 333332221 333333 3321 2345688999999999987765
Q ss_pred ccc
Q 002864 314 VTM 316 (872)
Q Consensus 314 vt~ 316 (872)
...
T Consensus 106 ~~~ 108 (226)
T PF01435_consen 106 LKS 108 (226)
T ss_dssp CCC
T ss_pred chH
Confidence 544
No 41
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=46.82 E-value=1.3e+02 Score=33.27 Aligned_cols=51 Identities=25% Similarity=0.288 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCccccCccchhhhhhHHHHHHHHHHHhhhCcchhhHHHHHHHHH
Q 002864 299 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT 355 (872)
Q Consensus 299 ~~iaHElaHqWfGn~vt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~ 355 (872)
-.|+.+.| |+|.--... --||||-|+|..+.++.+++.+......++.+.+
T Consensus 251 l~ivR~ea-~YF~PQ~qT-----kVMNEGWAtfWHytiln~lydE~~~~~~~~lEfL 301 (495)
T COG2719 251 LRIVRKEA-QYFYPQRQT-----KVMNEGWATFWHYTILNHLYDEGKLTERAMLEFL 301 (495)
T ss_pred HHHHHHHH-HHhcchHHH-----HHhhhhHHHHHHHHHHHhhhhhcccChHHHHHHH
Confidence 34555555 445433322 2489999999999999988877666555555544
No 42
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=42.64 E-value=87 Score=30.92 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc
Q 002864 292 ANKQRVATVVAHELAHQWFGNL 313 (872)
Q Consensus 292 ~~~~~~~~~iaHElaHqWfGn~ 313 (872)
-....+..++.|||||.++|+.
T Consensus 77 l~~~~i~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 77 LPYETILGTMLHELAHNVHGPH 98 (186)
T ss_pred eeHHHHHHHHHHHHHhcccCCc
Confidence 3456788999999999999874
No 43
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=40.73 E-value=1.6e+02 Score=32.51 Aligned_cols=117 Identities=16% Similarity=0.246 Sum_probs=74.1
Q ss_pred hhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHhccCCCcH--------HHHHHH----HHHHHHHHHHHhccChhHHH-HH
Q 002864 562 ETDRFGILDDHFALC-MARQQTLTSLLTLMASYSEETEY--------TVLSNL----ITISYKIGRIAADARPELLD-YL 627 (872)
Q Consensus 562 ~~~ra~li~D~~~la-~~g~l~~~~~l~l~~~l~~e~~~--------~~w~~~----~~~l~~l~~~~~~~~~~~~~-~~ 627 (872)
.-+|.++|+|+.... .+.-++|..=|.+++.-++|-.+ .+|... ...|..|.+.+... |+..+ .+
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~-p~l~nLl~ 390 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDEN-PELANLLL 390 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcC-cchhhhhc
Confidence 678999999985544 44457999999998887776554 345421 12344555555433 23222 12
Q ss_pred HHHHHHHHHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhhcCCCCCCCCcchhh
Q 002864 628 KQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRK 699 (872)
Q Consensus 628 ~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~-~c~~~A~~~f~~~~~~~~~~~i~~~lr~ 699 (872)
..|..+++.. ...-+|. ++..|...|.+ +|...|...|+.|.. ..+|.+|.+
T Consensus 391 ~pyF~~~~~~---------------~~~~~R~-vV~~a~~~giP~P~~ssalsy~Dsyr~----~~lpaNLiQ 443 (473)
T COG0362 391 APYFKSILEE---------------YQQSLRR-VVAYAVEAGIPVPAFSSALSYYDSYRT----ARLPANLIQ 443 (473)
T ss_pred CHHHHHHHHH---------------HHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHhhh----ccccHHHHH
Confidence 3344333332 2344555 55667888877 999999999999974 457888766
No 44
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=40.42 E-value=40 Score=36.07 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=40.5
Q ss_pred HHHHHHHhCCCCCCCCcceeecCCCCCcccccc---cccccccccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccc
Q 002864 240 LELYKEYFAVPYSLPKLDMIAIPDFAAGAMENY---GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 315 (872)
Q Consensus 240 l~~~e~~~g~~yP~~kld~v~~p~~~~gamE~~---gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~vt 315 (872)
+.-....-|++ +.+++.++..|....-++... |.|.+.+. ++ +. .+...+..+++||++|.=-++.+.
T Consensus 105 v~~~a~~~~~~-~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~g-Ll-~~-----l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 105 VAELARQAGIP-HMPEVYILETPQPNAFALGGGPKNGRVVVTTG-LL-DL-----LNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHHHHHCCCC-CCCeeEEecCCCccceecCCCCCCeeEEecHH-HH-hh-----CCHHHHHHHHHHHHHHHhcccHHH
Confidence 33344455533 246677776665544455553 56665554 33 21 134568899999999987776554
No 45
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=40.29 E-value=42 Score=31.41 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHH
Q 002864 235 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 308 (872)
Q Consensus 235 ~~~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 308 (872)
...+.++-.+..|+-+||.++...=.- ++. .|--.+..+.+=++|..-.......+..+|.||+||-
T Consensus 6 ~L~~~~~~as~~~~r~~~~p~~~~n~R------g~t-aG~ayL~~~~I~lNP~ll~en~~~f~~~vV~HELaHl 72 (156)
T COG3091 6 KLQQCVEQASLKFFRKFFRPKASYNQR------GRT-AGGAYLLKSEIRLNPKLLEENGEDFIEQVVPHELAHL 72 (156)
T ss_pred HHHHHHHHHHHHhcCCCCCcceehhhh------hhh-cchhhccccccccCHHHHHHccHHHHHHHHHHHHHHH
Confidence 344555555666665888887653211 111 1111111112222332111223345778899999873
No 46
>PRK03982 heat shock protein HtpX; Provisional
Probab=40.19 E-value=49 Score=35.29 Aligned_cols=66 Identities=26% Similarity=0.390 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCccccc-----ccccccccccccccCCCChHHHHHHHHHHHHHHHHHHHh
Q 002864 236 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN-----YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 310 (872)
Q Consensus 236 ~~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE~-----~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 310 (872)
..+.++-+.+..|+| .+++-++ |+....|+-. -|.|...+. ++ +. -+...+..++|||++|-==
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~--~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~~-----l~~~El~AVlAHElgHi~~ 138 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIV--PTQTPNAFATGRDPKHAVVAVTEG-IL-NL-----LNEDELEGVIAHELTHIKN 138 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEE--eCCCcceEEeccCCCCeEEEeehH-HH-hh-----CCHHHHHHHHHHHHHHHHc
Confidence 445566666677764 4565554 3222222221 233433333 22 11 1345689999999999765
Q ss_pred cC
Q 002864 311 GN 312 (872)
Q Consensus 311 Gn 312 (872)
++
T Consensus 139 ~h 140 (288)
T PRK03982 139 RD 140 (288)
T ss_pred CC
Confidence 54
No 47
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=39.62 E-value=85 Score=31.09 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q 002864 296 RVATVVAHELAHQW 309 (872)
Q Consensus 296 ~~~~~iaHElaHqW 309 (872)
..+.++|||++|+.
T Consensus 130 ~~a~~~AHElGH~l 143 (194)
T cd04269 130 LFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHhhc
Confidence 45789999999996
No 48
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.58 E-value=2.8e+02 Score=31.50 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=45.7
Q ss_pred EecCCCCeEEEEEEEEEEEECC--CCEEEEEecC---ceeeEEEEEeccCCCCcc--ccCeeEEEecCCeEEEEEeCCCc
Q 002864 24 TPDLTSCKFGGSVAIDVDVVGD--TKFIVLNAAD---LTINNRSVSFTNKVSSKA--LEPTKVELVEADEILVLEFAETL 96 (872)
Q Consensus 24 ~~d~~~~~~~G~v~I~~~~~~~--~~~i~L~~~~---l~i~~v~i~~~~~~~~~~--~~~~~~~~~~~~~~l~i~l~~~L 96 (872)
++|+.+....=++.|++++..+ .+...|-... -.+..+.+...+...... ....++.-....+.+.|.|+.||
T Consensus 10 ~idl~~~~vk~~~~i~i~N~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~pl 89 (432)
T PF04597_consen 10 TIDLSKSYVKETIEITIKNIGDEPVSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVNSGSEIKYYEITLPKPL 89 (432)
T ss_pred EEEccCcEEEEEEEEEEEECCCCCceEEEEEECchhhccEEEEEEEECCCccccccccccccccCCCCcceEEEECCCCC
Confidence 4566666666677777776644 3444443321 122233332211111000 11122222233456999999999
Q ss_pred CCc-eEEEEEEEEe
Q 002864 97 PTG-MGVLAIGFEG 109 (872)
Q Consensus 97 ~~g-~~~L~i~y~g 109 (872)
+|| +.+|.+.|.-
T Consensus 90 ~~~~~~~l~v~~~~ 103 (432)
T PF04597_consen 90 APGEKVTLTVEYVL 103 (432)
T ss_pred CCCCEEEEEEEEEe
Confidence 999 8888888763
No 49
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=38.53 E-value=31 Score=28.73 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCC--cccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHH
Q 002864 238 KTLELYKEYFAVPYSLPKLDMIAIPDFAA--GAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 309 (872)
Q Consensus 238 ~~l~~~e~~~g~~yP~~kld~v~~p~~~~--gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 309 (872)
.+-..+|..||.+ +.+..+-.-|.... ..|..- -++.... +.+.+..-.. ....-..+++||++|=+
T Consensus 5 ~~r~~~e~~~G~d--l~~Vrvh~~~~a~~~~~~~~A~-A~T~G~~-I~f~~g~~~~-~s~~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 5 SIRSRLERAFGAD--LSDVRVHTGPAASRAAAALGAR-AFTVGND-IYFAPGKYNP-DSPEGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHHhCCC--ccceEEEeCCchhhhhhccCCe-EEEECCE-EEEcCCCcCC-CCCCcchhHhHHHHHHH
Confidence 3456789999954 66666544332211 112111 2333333 3332211000 00113478999999954
No 50
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=38.35 E-value=92 Score=28.37 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=34.6
Q ss_pred CEEEEEec---CceeeEEEEEeccCCCCccccCeeEEEecCC-eEEEEEeCCCcCCceEEEEEEEEe
Q 002864 47 KFIVLNAA---DLTINNRSVSFTNKVSSKALEPTKVELVEAD-EILVLEFAETLPTGMGVLAIGFEG 109 (872)
Q Consensus 47 ~~i~L~~~---~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~L~~g~~~L~i~y~g 109 (872)
..|.|+.. ...+..+.+.+.++ ..+.......+..+ ..++|.++.+|++|.|+|.-+..+
T Consensus 47 ~~i~L~Fse~ve~~fs~~~l~~~d~---~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS 110 (127)
T COG2372 47 AAITLEFSEGVEPGFSGAKLTGPDG---EEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVS 110 (127)
T ss_pred eeEEEecCCccCCCcceeEEECCCC---CccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEe
Confidence 34556554 23335566654322 12222222223333 459999999999999998877654
No 51
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=37.77 E-value=1.4e+02 Score=32.77 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCCCCCCcceeecCCCCCcccccccccccccccccccCCCChHHHHHHHHHHHHHHHH-H----------
Q 002864 239 TLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELA-H---------- 307 (872)
Q Consensus 239 ~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEla-H---------- 307 (872)
+=++..+|++ .. --+..+...++...+||-.-+-|.++.+. .....++..++.||+. |
T Consensus 118 ~~~~~~~y~~-~~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~---------~fs~~~l~~L~~HEigvH~lt~~Ng~~Q 186 (349)
T PF08014_consen 118 LQERLKKYFG-KE-GFEVKVELSDDLLARAMVSGDRLKINKNA---------MFSERDLEALLHHEIGVHLLTTLNGRAQ 186 (349)
T ss_pred HHHHHHHHhc-cc-CceEEEEEcCCcchhhcccCCeeEEcCCC---------CcCHHHHHHHHHHhhhhhhccccccccC
Confidence 3344555666 22 22456666677877777655555554432 1234568899999994 4
Q ss_pred --HHhcCccccCccchhhhhhHHHHHHHHHH
Q 002864 308 --QWFGNLVTMEWWTHLWLNEGFATWVSYLA 336 (872)
Q Consensus 308 --qWfGn~vt~~~w~d~WL~EGfa~y~~~~~ 336 (872)
.|++....+.. =..||+|.+.+++.
T Consensus 187 Pl~~l~~Glp~~~----~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 187 PLKILSLGLPGYT----PTQEGLAVLSEYLS 213 (349)
T ss_pred CcHHhCCCCCCCC----CCchHHHHHHHHHh
Confidence 34433222211 13799999999763
No 52
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=37.49 E-value=1.1e+02 Score=28.97 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=24.3
Q ss_pred eEEEEEEcCCch---hhHHHHHHHHHHHHHHHHHHhCC
Q 002864 215 IKVRVYCQVGKA---NQGKFALNVAVKTLELYKEYFAV 249 (872)
Q Consensus 215 ~~v~v~~~~~~~---~~~~~~l~~~~~~l~~~e~~~g~ 249 (872)
.++++|..+... .......+.+.+++..+++..++
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l 39 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPL 39 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCe
Confidence 467888877642 23455677888888888887653
No 53
>PRK01345 heat shock protein HtpX; Provisional
Probab=36.96 E-value=68 Score=34.75 Aligned_cols=68 Identities=28% Similarity=0.273 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCccccc---ccccccccccccccCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 002864 236 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 312 (872)
Q Consensus 236 ~~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 312 (872)
..++++.+.+..|+| .+++-++-.+....-+... -+.|.+.+. ++- . .+...+..++|||++|.==++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~g-LL~-~-----L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTG-LLQ-R-----LSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechH-HHh-h-----CCHHHHHHHHHHHHHHHHcCC
Confidence 456667777778875 4566554433222222221 123444333 322 1 123568999999999976554
No 54
>PRK02870 heat shock protein HtpX; Provisional
Probab=36.93 E-value=62 Score=35.29 Aligned_cols=63 Identities=25% Similarity=0.380 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCCcccc---cccccccccccccccCCCChHHHHHHHHHHHHHHHHHH
Q 002864 238 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 308 (872)
Q Consensus 238 ~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 308 (872)
++++-+....|+|+ .+++-++-.+....-++. .-+.|.+.+. ++ +. -....+..++|||++|-
T Consensus 119 ~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~G-LL-~~-----L~~dEL~aVlAHELgHi 184 (336)
T PRK02870 119 NVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTG-LL-EK-----LDRDELQAVMAHELSHI 184 (336)
T ss_pred HHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehH-Hh-hh-----CCHHHHHHHHHHHHHHH
Confidence 44445555567543 346655543332222322 1234444443 22 11 13456889999999996
No 55
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=36.40 E-value=24 Score=30.74 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHh
Q 002864 296 RVATVVAHELAHQWF 310 (872)
Q Consensus 296 ~~~~~iaHElaHqWf 310 (872)
....+++||++|-|=
T Consensus 78 GC~~TL~HEL~H~WQ 92 (141)
T PHA02456 78 GCRDTLAHELNHAWQ 92 (141)
T ss_pred chHHHHHHHHHHHHh
Confidence 356899999999993
No 56
>PRK04897 heat shock protein HtpX; Provisional
Probab=35.88 E-value=49 Score=35.48 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccc---cccccccccccccccCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 002864 236 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 312 (872)
Q Consensus 236 ~~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 312 (872)
..+.++.+.+..|+ |.|++-++-.+....-+.. .-+.|.+... ++ +. -..+.+..++|||++|-=-|+
T Consensus 82 L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~g-Ll-~~-----l~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 82 LWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTG-LL-AI-----MNREELEGVIGHEISHIRNYD 152 (298)
T ss_pred HHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehH-HH-hh-----CCHHHHHHHHHHHHHHHhcCC
Confidence 45666667777786 4567766644322221211 1223443332 22 11 123568899999999965443
No 57
>PRK05457 heat shock protein HtpX; Provisional
Probab=35.88 E-value=52 Score=35.00 Aligned_cols=68 Identities=26% Similarity=0.394 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccc---cccccccccccccccCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 002864 236 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 312 (872)
Q Consensus 236 ~~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 312 (872)
..+.++.+.+..|+ |.|++-++-.+....-+.. .-+.|.+... ++ +. -+.+.+..++|||++|.=-|+
T Consensus 79 L~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~~-----L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 79 LVETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LL-QN-----MSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hh-hh-----CCHHHHHHHHHHHHHHHHcCC
Confidence 34556666777785 5677776654332222221 1223444332 22 11 133568899999999976554
No 58
>PRK03072 heat shock protein HtpX; Provisional
Probab=35.83 E-value=68 Score=34.24 Aligned_cols=69 Identities=20% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccc-ccc--ccccccccccccCCCChHHHHHHHHHHHHHHHHHHHhc
Q 002864 235 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME-NYG--LVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 311 (872)
Q Consensus 235 ~~~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE-~~g--li~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 311 (872)
...+.++.+.+..|+ |.|++-++-.+....-+.. +++ .+...+. ++ +. ...+.+..++|||++|-==|
T Consensus 71 ~L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll-~~-----l~~~El~aVlAHElgHi~~~ 141 (288)
T PRK03072 71 AMYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-IL-QI-----LNERELRGVLGHELSHVYNR 141 (288)
T ss_pred HHHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HH-Hh-----CCHHHHHHHHHHHHHHHhcC
Confidence 345666777777886 4567766554432221111 111 2222222 32 11 13356889999999996444
Q ss_pred C
Q 002864 312 N 312 (872)
Q Consensus 312 n 312 (872)
+
T Consensus 142 d 142 (288)
T PRK03072 142 D 142 (288)
T ss_pred C
Confidence 3
No 59
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=35.45 E-value=24 Score=34.43 Aligned_cols=13 Identities=46% Similarity=0.527 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 002864 297 VATVVAHELAHQW 309 (872)
Q Consensus 297 ~~~~iaHElaHqW 309 (872)
-..++|||++||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 4567999999998
No 60
>PRK03001 M48 family peptidase; Provisional
Probab=34.74 E-value=58 Score=34.62 Aligned_cols=67 Identities=22% Similarity=0.211 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccc---cccccccccccccccCCCChHHHHHHHHHHHHHHHHHHHhc
Q 002864 236 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 311 (872)
Q Consensus 236 ~~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 311 (872)
..+.++.+.+..|+|. +++-++-.+....-+.. ..+.|.+.+. ++ +.- ....+..++|||++|-==+
T Consensus 69 L~~~v~~la~~~g~~~--p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~l-----~~~El~aVlAHElgHi~~~ 138 (283)
T PRK03001 69 FYRMVRELAQRAGLPM--PKVYLINEDQPNAFATGRNPEHAAVAATTG-IL-RVL-----SEREIRGVMAHELAHVKHR 138 (283)
T ss_pred HHHHHHHHHHHcCCCC--CeEEEecCCCcceEEecCCCCCeEEEecHH-HH-hhC-----CHHHHHHHHHHHHHHHhCC
Confidence 4466666677788654 46554432221111111 1123433333 22 111 2456889999999997544
No 61
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=34.20 E-value=1.2e+02 Score=31.02 Aligned_cols=117 Identities=9% Similarity=0.059 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHh--
Q 002864 564 DRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEK-- 641 (872)
Q Consensus 564 ~ra~li~D~~~la~~g~l~~~~~l~l~~~l~~e~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 641 (872)
-|.+++.-...+...|.++...+.+++..|..|-+..|=.......+.+.+.++...... ..+.+-+=+++..+..+
T Consensus 4 kr~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~~~~-~~~ldLlP~~Ls~L~~~~~ 82 (223)
T PF14675_consen 4 KRFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGDNKN-GKWLDLLPKCLSALSASES 82 (223)
T ss_dssp HHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS---S--STTTTHHHHHHHHHHT-S-
T ss_pred HHHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCccc-chHHHHHHHHHHHHhcCcc
Confidence 377788888888999999999999999999999999988888877777666665321111 12222222222222222
Q ss_pred cCCccCCCCCHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHh
Q 002864 642 LGWDSKPGESHLDALLRGEIFTALALLGH-KETLNEASKRFHAF 684 (872)
Q Consensus 642 lg~~~~~~~~~~~~~lr~~il~~ac~~g~-~~c~~~A~~~f~~~ 684 (872)
+.. .+....-...+..+++-.|...= ..|+-.-..+|++.
T Consensus 83 i~~---~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd~ 123 (223)
T PF14675_consen 83 INY---NGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRDV 123 (223)
T ss_dssp -SS---SS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGGS
T ss_pred ccc---ccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhcC
Confidence 221 12233457888899999998873 46666666666653
No 62
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=34.03 E-value=84 Score=25.48 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCC
Q 002864 391 GASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE 438 (872)
Q Consensus 391 ga~vl~mL~~~lG~~~F~~~lr~yl~~~~~~~~~~~df~~~l~~~~~~ 438 (872)
=+.+|.+|...++.+.+ ..|..++++++-+-++-++|...+....|.
T Consensus 11 F~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 36789999999998885 456777788888999999999999998884
No 63
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.38 E-value=2.2e+02 Score=25.21 Aligned_cols=43 Identities=26% Similarity=0.475 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcchHHHHHHhhccCCCHHHHHHHHHH
Q 002864 780 AWKWLKDNWDHISKTWGSGFLITRFISSIVSPFASYEKVREVEEF 824 (872)
Q Consensus 780 ~~~fl~~n~~~i~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f 824 (872)
.|+|+++||..|..-++. ....+.--+.+.+.+.++++++.+=
T Consensus 1 ~~~~~~~~w~ii~a~~~~--~~~~~~~~l~~~~a~~~~~~~l~~~ 43 (106)
T PF10805_consen 1 MWEFIKKNWGIIWAVFGI--AGGIFWLWLRRTYAKREDIEKLEER 43 (106)
T ss_pred ChHHHHhCcHHHHHHHHH--HHHHHHHHHHHhhccHHHHHHHHHH
Confidence 489999999988776632 1223333456677887777777433
No 64
>PRK02391 heat shock protein HtpX; Provisional
Probab=30.18 E-value=90 Score=33.44 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccc---cccccccccccccccCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 002864 236 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 312 (872)
Q Consensus 236 ~~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 312 (872)
..+.++.+.+..|+| .+++-++-.+.....+.. .-+.|.+.+. ++ +. -+...+..++|||++|--=++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~~-----L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTG-LM-RR-----LDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHH-HH-hh-----CCHHHHHHHHHHHHHHHHcCC
Confidence 345556666778865 457666654432222221 1223433332 22 11 123568899999999976554
No 65
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.07 E-value=2.7e+02 Score=33.05 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=12.4
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHH
Q 002864 586 LLTLMASYSEETEYTVLSNLITISYKI 612 (872)
Q Consensus 586 ~l~l~~~l~~e~~~~~w~~~~~~l~~l 612 (872)
++.++.+++.+.|........+.|+.|
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~evl~~i 287 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLNEVLERI 287 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 66
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=29.42 E-value=58 Score=32.67 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=18.6
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHhcCcc
Q 002864 284 YDDQHSAAANKQRVATVVAHELAHQWFGNLV 314 (872)
Q Consensus 284 ~~~~~~~~~~~~~~~~~iaHElaHqWfGn~v 314 (872)
+++........-.+-.+|||||.|-.-...+
T Consensus 23 f~~~~p~~~~yg~lG~ilahel~hafd~~g~ 53 (206)
T PF01431_consen 23 FDPNYPPALNYGGLGFILAHELMHAFDPEGI 53 (206)
T ss_dssp --TTS-HHHHHHTHHHHHHHHHHHCTSTTGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3444344444556778999999997744333
No 67
>PRK10301 hypothetical protein; Provisional
Probab=28.69 E-value=3.1e+02 Score=25.03 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=19.5
Q ss_pred CCeEEEEEeCCCcCCceEEEEEEEEe
Q 002864 84 ADEILVLEFAETLPTGMGVLAIGFEG 109 (872)
Q Consensus 84 ~~~~l~i~l~~~L~~g~~~L~i~y~g 109 (872)
+...+++.++.+|++|.|+|+-+--+
T Consensus 84 ~~~~~~v~l~~~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 84 DQKQLIVPLADSLKPGTYTVDWHVVS 109 (124)
T ss_pred CCcEEEEECCCCCCCccEEEEEEEEe
Confidence 34578888888999999987655443
No 68
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=28.45 E-value=3e+02 Score=25.79 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=35.9
Q ss_pred CCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhCCCCCHHHHHHHHHHhhc
Q 002864 691 PLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDL-SQEKTRILSSLASCPDVNIVLEVLNFLLS 758 (872)
Q Consensus 691 ~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~-~~ek~~il~aL~c~~d~~~l~~~L~~~l~ 758 (872)
..|.++-|..|.-++++- -|-+|..+-..... ...|..|++.|++.++.+ +.-++++++.
T Consensus 79 ~~I~~ehR~~l~pvvlRI-------Lygk~~~~~~~~~~~~~rR~aIL~~L~~l~~~E-l~~Fl~l~~~ 139 (141)
T PF07539_consen 79 SVIEEEHRPELMPVVLRI-------LYGKMQSRKGSGSKKASRRAAILRFLAGLSEEE-LGLFLDLMLE 139 (141)
T ss_pred CCCCHHHHhHHHHHHHHH-------HHHHHhhcCCCCCcchHHHHHHHHHHhCCCHHH-HHHHHHHHhc
Confidence 347777777665554431 12333333222222 367888999999987776 5667777654
No 69
>PRK09687 putative lyase; Provisional
Probab=28.31 E-value=7.3e+02 Score=26.23 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 002864 713 DRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNF 755 (872)
Q Consensus 713 ~~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d~~~l~~~L~~ 755 (872)
+...-+.|..... ..+..-|...+.+||...++..+..+++.
T Consensus 190 ~~~~~~~L~~~L~-D~~~~VR~~A~~aLg~~~~~~av~~Li~~ 231 (280)
T PRK09687 190 NPDIREAFVAMLQ-DKNEEIRIEAIIGLALRKDKRVLSVLIKE 231 (280)
T ss_pred CHHHHHHHHHHhc-CCChHHHHHHHHHHHccCChhHHHHHHHH
Confidence 3344444544443 23344455566666666665555555444
No 70
>PRK01265 heat shock protein HtpX; Provisional
Probab=28.25 E-value=1e+02 Score=33.50 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCCccccc---ccccccccccccccCCCChHHHHHHHHHHHHHHHHHHHhc
Q 002864 237 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 311 (872)
Q Consensus 237 ~~~l~~~e~~~g~~yP~~kld~v~~p~~~~gamE~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 311 (872)
.+.++.+.+..|+ |.+++-++-.+....-+... -+-|.+.+. ++ +. -+...+..++|||++|-==+
T Consensus 86 ~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~-----l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 86 YSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAGKRIAITLP-LL-KI-----LNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCCCEEEEehH-HH-hh-----CCHHHHHHHHHHHHHHHHcc
Confidence 4556666677776 45676665443322112111 123333332 22 11 13456889999999995433
No 71
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=27.78 E-value=1.6e+02 Score=29.74 Aligned_cols=40 Identities=20% Similarity=0.025 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhcCccc-----cCccchhhhhhHHHHHHHHH
Q 002864 296 RVATVVAHELAHQWFGNLVT-----MEWWTHLWLNEGFATWVSYL 335 (872)
Q Consensus 296 ~~~~~iaHElaHqWfGn~vt-----~~~w~d~WL~EGfa~y~~~~ 335 (872)
+-..++|||++|-|+..... ...|...=..|--|++++..
T Consensus 71 r~rFtlAHELGH~llH~~~~~~~~~~~~~~~~~~~E~~AN~FAa~ 115 (213)
T COG2856 71 RKRFTLAHELGHALLHTDLNTRFDAEPTLQQDRKIEAEANAFAAE 115 (213)
T ss_pred HHHHHHHHHHhHHHhccccchhhhcccccchhHHHHHHHHHHHHH
Confidence 34578999999999976531 12222333456666666643
No 72
>PRK15245 type III effector phosphothreonine lyase; Provisional
Probab=26.46 E-value=1.5e+02 Score=29.30 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=61.0
Q ss_pred eEEEEe-----cCCCeeeecCcccceeecCCeEEEEEecCCCccceeeEEEEeeeeEeeccccCCeEEEEEEcCCchh--
Q 002864 155 KITLDV-----PSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKAN-- 227 (872)
Q Consensus 155 kl~i~~-----p~~~~~~sng~~~~~~~~~~~~~~~f~~t~~~~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~-- 227 (872)
|+.|.+ |..+.+++........+-+.|+.+.-+.-+. . ....-|..+++|..|..++
T Consensus 104 K~HiSV~~~qv~qAF~als~lLfSeDSPiDKWKVTDM~rv~q---------------q-sRV~~GAQfTLYvKpd~edsq 167 (241)
T PRK15245 104 KFHISVARDQVPQAFQALSGLLFSEDSPVDKWKVTDMERVSQ---------------Q-SRVGLGAQFTLYVKPDQENSQ 167 (241)
T ss_pred eEEEEecHHHHHHHHHHhhhhhcCCCCCcceeeeccccccCc---------------c-chhcccceEEEEecCcccccc
Confidence 366666 4456667655444444444455543322111 1 1223488999999997753
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCccee--ecCCCCCcccccccccccccc
Q 002864 228 QGKFALNVAVKTLELYKEYFAVPYSLPKLDMI--AIPDFAAGAMENYGLVTYRET 280 (872)
Q Consensus 228 ~~~~~l~~~~~~l~~~e~~~g~~yP~~kld~v--~~p~~~~gamE~~gli~~~e~ 280 (872)
.....+..+.+.|+.+|..++. -.++ ..|... -.-|+|..+.||..
T Consensus 168 Ysa~~l~k~r~Fie~lE~~L~~------~gi~pG~~P~SD-V~pe~W~y~SYRNE 215 (241)
T PRK15245 168 YSASFLHKTRQFIECLESRLSE------NGVISGQCPESD-VHPENWKYLSYRNE 215 (241)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH------cCCCCCCCCccc-cCccccceeeehhh
Confidence 3355678889999999998861 1111 112221 24589999999976
No 73
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=25.51 E-value=2.1e+02 Score=27.92 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCc
Q 002864 293 NKQRVATVVAHELAHQWFGNLVTMEW 318 (872)
Q Consensus 293 ~~~~~~~~iaHElaHqWfGn~vt~~~ 318 (872)
.+..+..+|+|||.|.|=.-..-.+|
T Consensus 67 ~~~~l~~~l~HELIHayD~cr~kvD~ 92 (173)
T PF09768_consen 67 SQGHLEDTLTHELIHAYDHCRAKVDW 92 (173)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 34568899999999998544444444
No 74
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=25.50 E-value=1.5e+02 Score=30.17 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHH
Q 002864 297 VATVVAHELAHQW 309 (872)
Q Consensus 297 ~~~~iaHElaHqW 309 (872)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 4689999999985
No 75
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=25.32 E-value=40 Score=28.98 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=22.4
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhccCCCChHH
Q 002864 397 MLQNYLGAECFQRSLASYIKKYACSNAKTED 427 (872)
Q Consensus 397 mL~~~lG~~~F~~~lr~yl~~~~~~~~~~~d 427 (872)
.++..||++.|....+.|+.++.-...+..+
T Consensus 54 ~~~~llG~~~f~~la~~y~~~~p~~s~~l~~ 84 (94)
T PF09836_consen 54 VVRALLGEEFFDALARAYIRAHPSRSPDLND 84 (94)
T ss_dssp TGGGGS-HHHHHHHHHHHHHSGGGG-S-GGG
T ss_pred HHHHHhCHHHHHHHHHHHHHhCCCCCCcHHH
Confidence 3467789999999999999998766655443
No 76
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=23.55 E-value=1e+02 Score=30.66 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH
Q 002864 295 QRVATVVAHELAHQ 308 (872)
Q Consensus 295 ~~~~~~iaHElaHq 308 (872)
...+.++|||++|.
T Consensus 129 ~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 129 LSFAVIIAHELGHN 142 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45788999999995
No 77
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=22.94 E-value=1.7e+02 Score=26.72 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=16.7
Q ss_pred cCCeEEEEEeCCCcCCceEEEEEEE
Q 002864 83 EADEILVLEFAETLPTGMGVLAIGF 107 (872)
Q Consensus 83 ~~~~~l~i~l~~~L~~g~~~L~i~y 107 (872)
.....+.+.++.+|.+|.|.+.+..
T Consensus 83 ~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 83 GGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp T-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred CCEEEEEEEEcCccCCCeEEEEEEE
Confidence 4445667777878999999998888
No 78
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=22.59 E-value=92 Score=33.15 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCc
Q 002864 293 NKQRVATVVAHELAHQWFGNL 313 (872)
Q Consensus 293 ~~~~~~~~iaHElaHqWfGn~ 313 (872)
+...++.+++||+|||=-+..
T Consensus 271 ~ddglAtvLgHE~aHaVarH~ 291 (424)
T KOG2661|consen 271 DDDGLATVLGHEIAHAVARHA 291 (424)
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999977653
No 79
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=21.31 E-value=2e+02 Score=30.84 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=40.0
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHh
Q 002864 819 REVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNE--------GHLAEAVKEL 867 (872)
Q Consensus 819 ~~~~~f~~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~--------~~i~~wl~~~ 867 (872)
-.+++|.+........+.+++-++.|+.|..|.++.+.. ..|..|.++.
T Consensus 228 ~~LKr~~K~~k~~~~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~ 284 (299)
T PF03715_consen 228 VQLKRFLKSCKNAKFKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESEL 284 (299)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHhc
Confidence 568899988766788899999999999999999887654 4477887754
No 80
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=20.67 E-value=4.1e+02 Score=28.91 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=61.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 002864 660 EIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSS 739 (872)
Q Consensus 660 ~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~il~a 739 (872)
-|-+.+++.+..+-.+...+.+.. +|.....+ +|..+.++. =+++--+.+.++...+.+......+++|
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~---------lP~~vl~a-L~~~LEh~~-l~~~l~~~l~~~~~~~~d~~~~~a~lRA 239 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPH---------LPPEVLYA-LCGCLEHQP-LPDKLAEALLERLEQAPDLELLSALLRA 239 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhh---------CChHHHHH-HHHHhcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 367777888776543333333322 33333331 233333332 3566788999998888899999999999
Q ss_pred hCCCCCHHHHHHHHHHhhcC-cCCccc
Q 002864 740 LASCPDVNIVLEVLNFLLSS-EVRSQD 765 (872)
Q Consensus 740 L~c~~d~~~l~~~L~~~l~~-~i~~qd 765 (872)
||++.........++.++.. .....|
T Consensus 240 ls~~~~~~~~~~~i~~~L~~~~~~~~e 266 (340)
T PF12069_consen 240 LSSAPASDLVAILIDALLQSPRLCHPE 266 (340)
T ss_pred HcCCCchhHHHHHHHHHhcCcccCChH
Confidence 99999998888878888765 233444
No 81
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=20.07 E-value=7.9e+02 Score=23.70 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=26.7
Q ss_pred EEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCceee
Q 002864 21 IRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTIN 59 (872)
Q Consensus 21 l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~ 59 (872)
|++..+.+..+++|.+++.- -.+|+++|.++..-+...
T Consensus 35 l~~~~d~~~i~vsGn~t~~w-di~P~DrI~~~~~~~~~e 72 (164)
T smart00675 35 LVVDMDPDGLHISGNITVIW-DVQPTDRISARVSVMHFE 72 (164)
T ss_pred eEEEEcCCeEEEeeeEEEEE-ecCCCCeEEEEEEEEEec
Confidence 34445777889999999877 446788888876544333
Done!