BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002867
(872 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 135/412 (32%), Positives = 190/412 (46%), Gaps = 45/412 (10%)
Query: 32 SVSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS 91
+ Y + +G+ ISGSIHY R W D + K K GL+ IQTYV WN HEP
Sbjct: 10 EIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPW 69
Query: 92 PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENG 151
PG+Y F ++D+ F++LA + GL V LR GPY+CAEW GG P WL I R+ +
Sbjct: 70 PGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDP 129
Query: 152 PFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAK- 210
+ A + K+ ++ MK L GGP+I Q+ENEYG A Y R+ K
Sbjct: 130 DYLAAVDKWLGVLLPKMKP--LLYQNGGPVITVQVENEYG----SYFACDFDYLRFLQKR 183
Query: 211 MAVGLGTGVPWIMCKQDDAPDPLIN--TCNGFY-----------CDYFSPNKAYKPK--- 254
LG V ++ D A + G Y D F + +PK
Sbjct: 184 FRHHLGDDV--VLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPL 241
Query: 255 MWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFG--RTAGGP 312
+ +E +TGW +G P E +A S+ + +G S +N YM+ GGTNF A P
Sbjct: 242 INSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGAS-VNLYMFIGGTNFAYWNGANSP 300
Query: 313 FIA--TSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHV 370
+ A TSYDYDAPL E G L + + + + K+ E + P P Y + +
Sbjct: 301 YAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPI----PPSTPKFAYGKVTL 356
Query: 371 FKSKSACAAF--------LANYNQRTFAKVAFGNQHYNLPPWSISILPDCKN 414
K K+ AA + + TF +V QHY + ++ DC N
Sbjct: 357 EKLKTVGAALDILCPSGPIKSLYPLTFIQV---KQHYGFVLYRTTLPQDCSN 405
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 629 HSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALD----MGSMGKGQVWVNGQ 684
H SG WA S + +Y FS P+G L D KGQVW+NG
Sbjct: 506 HRDSGHHDEAWAHNS--SNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGF 563
Query: 685 SIGRHWPA 692
++GR+WPA
Sbjct: 564 NLGRYWPA 571
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 164/329 (49%), Gaps = 25/329 (7%)
Query: 30 EGSVSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHE 89
EG+ +NG+ ++ + IHYPR E W I+ K G + I YVFWN HE
Sbjct: 5 EGTFEVGKNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHE 64
Query: 90 PSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTE 149
P G+Y F G D+ F +LA++ G YV +R GPYVCAEW GG P WL I R +
Sbjct: 65 PEEGRYDFAGQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQ 124
Query: 150 NGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAA 209
+ + + F ++ + ++ S+GG II Q+ENEYG + I P S R
Sbjct: 125 DPYYXERVKLFLNEVGKQLADLQI--SKGGNIIXVQVENEYGA--FGIDKPYISEIRDXV 180
Query: 210 KMAVGLGTGVPWIMCK-----QDDAPDPLINTCN---GFYCD-YFSPNKAYKPKM---WT 257
K A G TGVP C +++A D L+ T N G D F K +P +
Sbjct: 181 KQA-GF-TGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCS 238
Query: 258 EAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPF---- 313
E W+GW+ +G R E+L + + + SF + Y HGGT+FG G F
Sbjct: 239 EFWSGWFDHWGAKHETRSAEELVKGXKEXLDRNISF-SLYXTHGGTSFGHWGGANFPNFS 297
Query: 314 -IATSYDYDAPLDEYGLLRQPKWGHLKDL 341
TSYDYDAP++E G + PK+ +++L
Sbjct: 298 PTCTSYDYDAPINESGKV-TPKYLEVRNL 325
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 646 AQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHW 690
A+ QP +YR+TF+ L+ + KG VWVNG +IGR+W
Sbjct: 504 AENQP-AYYRSTFNLNELGDTF-LNXXNWSKGXVWVNGHAIGRYW 546
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 156/315 (49%), Gaps = 41/315 (13%)
Query: 42 INGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNY 101
++GK ++SG+IHY R PE W + K G + ++TYV WN HEP G+++FEG+
Sbjct: 12 LDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDL 71
Query: 102 DLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFT 161
DL KF+++A+ GLY +R P++CAEW FGG P WL + R+ + + + ++
Sbjct: 72 DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWL-LTKNMRIRSSDPAYIEAVGRYY 130
Query: 162 KKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPW 221
+++ + L GG I++ Q+ENEYG ++Y R ++ G P
Sbjct: 131 DQLLPRLVPRLL--DNGGNILMMQVENEYGSY-----GEDKAYLRAIRQLMEECGVTCPL 183
Query: 222 IMCKQDDAP------------DPLINTCN---------GFYCDYFSPNKAYKPKMWTEAW 260
D P + L T N ++F + P M E W
Sbjct: 184 FTS---DGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFW 240
Query: 261 TGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGR----TAGGPFI-- 314
GW+ + P+ R ++LA +V + +++G IN YM+HGGTNFG +A G
Sbjct: 241 DGWFNRWKEPIITRDPKELADAVREVLEQGS--INLYMFHGGTNFGFMNGCSARGTLDLP 298
Query: 315 -ATSYDYDAPLDEYG 328
TSYDYDA LDE G
Sbjct: 299 QVTSYDYDALLDEEG 313
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 100/284 (35%), Gaps = 85/284 (29%)
Query: 475 YLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEG 534
YL Y T+ D E LR ++ ++V+GQ T Y + E + F +G
Sbjct: 385 YLLYRTETNWDAEEERLR--------IIDGRDRAQLYVDGQWVKTQYQT-EIGEDIFYQG 435
Query: 535 VNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKWTYKVCL 594
+ G++++ +L +G N G F L G+ G VC
Sbjct: 436 --KKKGLSRLDILIENMGRVNYGHKF-------LADTQRKGIRTG------------VCK 474
Query: 595 QSLKYGFLVSLTFWILIEVCLLNQIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTW- 653
L L W + L N EK++ S W +G QP +
Sbjct: 475 D------LHFLLNWKHYPLPLDNP-----EKIDF-------SKGWTQG------QPAFYA 510
Query: 654 YRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKC 713
Y T P LD+ GKG +VNGQ++GR W
Sbjct: 511 YDFTVEEPKDTY---LDLSEFGKGVAFVNGQNLGRFW----------------------- 544
Query: 714 LSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRR 757
N G ++P S+LK N +++FE G I L R+
Sbjct: 545 --NVGPTLS--LYIPHSYLKEGANRIIIFETEGQYKEEIHLTRK 584
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 113/391 (28%), Positives = 169/391 (43%), Gaps = 47/391 (12%)
Query: 33 VSYDSKAIAINGKRRILISGSIH-YPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS 91
V++D +I +NG+R ++ SG +H Y ++ D+ +K K G + + YV W E +
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 92 PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENG 151
PG Y EG +DL F AK+AG+Y+ R GPY+ AE + GGFP WL+ + GI RT +
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI-LRTSDE 124
Query: 152 PFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEY-GPMEYEIGAPGRSYTRWAAK 210
+ + I + ++ + GGPIIL Q ENEY G G P SY ++
Sbjct: 125 AYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIED 182
Query: 211 MAVGLGTGVPWIM----CKQDDAPDPLINTCN---------GFYC------------DYF 245
A G VP+I +AP + GF C YF
Sbjct: 183 HARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYF 242
Query: 246 SPNKAYK----PKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQK-----GGSFINY 296
+ + P E G + +GG + L + K G +F+N
Sbjct: 243 HTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNL 302
Query: 297 YMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGN 356
YM GGTN+G G P TSYDY + + E + + K+ LK L K+ P + N
Sbjct: 303 YMIFGGTNWGNL-GHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVS-PGYLVAN 360
Query: 357 PTVMPLGNYQEAH------VFKSKSACAAFL 381
P + Y + S S+ ++F
Sbjct: 361 PGDLSTSTYTNTADLTVTPLLGSNSSASSFF 391
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/387 (25%), Positives = 159/387 (41%), Gaps = 62/387 (16%)
Query: 29 VEGSVSYDSKAIAINGKRRILISGSIH-YPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNG 87
++ V++D ++ ++G+R ++ SG +H + P ++ D+ K K G + + YV W
Sbjct: 22 LQNIVTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWAL 81
Query: 88 HEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFR 147
E PG++ +G + L F + A +AG+Y+ R GPY+ AE + GGFP WL+ + G R
Sbjct: 82 LEGKPGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLR 140
Query: 148 TENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRW 207
T+ + + I ++ ++ + GGP+IL Q ENEY + P + Y ++
Sbjct: 141 TDAPDYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQY 198
Query: 208 AAKMAVGLGTGVPWIMCKQDDAPDPLINTCN----------------GFYCDYFSPNKAY 251
A G VP I +DA GF C +
Sbjct: 199 VIDQARNAGIIVPLI---NNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAH------- 248
Query: 252 KPKMWTEAW--TGWYTEFGGPVPHRPVEDLAFSVAKFIQKGG------------------ 291
P W + T W + P P + F F GG
Sbjct: 249 -PSAWPDNGLPTTWRQDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVF 307
Query: 292 ---------SFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLH 342
+ N YM GGTN+G G P TSYDY A + E + + K+ LK
Sbjct: 308 YKNNMAAGVTIFNIYMTFGGTNWGNL-GHPGGYTSYDYGASIREDRRIDREKYSELKLQG 366
Query: 343 RAIKLCEPALVSGNPTVMPLGNYQEAH 369
+ +K+ P ++ P G Y ++
Sbjct: 367 QFLKVS-PGYITATPENATQGVYSDSQ 392
>pdb|2JX9|A Chain A, Solution Structure Of The Gal_lectin Domain Of Mouse
Latrophilin-1 Gpcr
pdb|2JXA|A Chain A, Mouse Latrophilin-1 Gpcr Gal_lectin Domain In Complex With
Rhamnose
Length = 106
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 798 PGQKIKSIKFASFG-TPEGVCGS----YRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEM 852
PG + ++ A++G T + +C + C+ ++ + C + C V +
Sbjct: 23 PGSDVIMVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVAGSDA 82
Query: 853 FGGDPCPSIMKQLAVEAIC 871
F DPCP K L V+ C
Sbjct: 83 FP-DPCPGTYKYLEVQYDC 100
>pdb|2OAS|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
Transferase (Atoa) In Complex With Coa From Shewanella
Oneidensis, Northeast Structural Genomics Target Sor119.
pdb|2OAS|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
Transferase (Atoa) In Complex With Coa From Shewanella
Oneidensis, Northeast Structural Genomics Target Sor119
Length = 436
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 488 EGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKI--A 545
+GF+ + + SA +H F G A G + +G ++ GI I A
Sbjct: 160 DGFIHIDRFAAVYEQSASLPIHSFATGDAVSLAIG--QHVAELVRDGDCLQXGIGAIPDA 217
Query: 546 LLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRR 581
+LS G ++G H E ++ G+L V +N ++
Sbjct: 218 VLSCLTGHKDLGVHTELFSDGILQLVEKGVINNTKK 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,740,236
Number of Sequences: 62578
Number of extensions: 1395281
Number of successful extensions: 2922
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2890
Number of HSP's gapped (non-prelim): 19
length of query: 872
length of database: 14,973,337
effective HSP length: 107
effective length of query: 765
effective length of database: 8,277,491
effective search space: 6332280615
effective search space used: 6332280615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)