Query 002867
Match_columns 872
No_of_seqs 360 out of 1726
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 12:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 5E-220 1E-224 1914.4 78.0 832 11-872 8-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 1E-151 2E-156 1289.4 41.6 630 30-769 17-649 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 2.4E-88 5.2E-93 744.0 19.9 297 39-344 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 3.7E-37 8.1E-42 360.7 12.5 290 33-331 1-333 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 4.9E-20 1.1E-24 207.7 14.8 263 54-347 2-373 (374)
6 PF02140 Gal_Lectin: Galactose 99.8 4.5E-20 9.8E-25 163.8 4.3 76 794-871 1-80 (80)
7 KOG4729 Galactoside-binding le 99.8 3.6E-19 7.8E-24 185.3 7.8 86 786-872 40-130 (265)
8 PF02836 Glyco_hydro_2_C: Glyc 99.2 5.8E-10 1.3E-14 122.2 17.9 192 33-265 1-212 (298)
9 PRK10150 beta-D-glucuronidase; 99.0 3.8E-08 8.3E-13 118.2 25.5 159 31-224 276-448 (604)
10 PF13364 BetaGal_dom4_5: Beta- 98.9 2.4E-09 5.1E-14 101.3 6.9 68 648-742 33-104 (111)
11 PF00150 Cellulase: Cellulase 98.8 4.2E-08 9E-13 105.0 14.8 159 43-223 4-170 (281)
12 PRK09525 lacZ beta-D-galactosi 98.7 1.9E-07 4.2E-12 117.8 18.0 147 33-224 336-488 (1027)
13 PRK10340 ebgA cryptic beta-D-g 98.7 2E-07 4.2E-12 117.8 17.4 185 33-260 320-514 (1021)
14 PF13364 BetaGal_dom4_5: Beta- 98.6 1.1E-07 2.4E-12 90.0 9.0 84 463-553 24-110 (111)
15 COG3250 LacZ Beta-galactosidas 98.6 6.8E-07 1.5E-11 109.5 16.7 135 31-212 284-424 (808)
16 PF02837 Glyco_hydro_2_N: Glyc 98.0 4E-05 8.7E-10 76.6 10.6 100 469-574 63-164 (167)
17 smart00633 Glyco_10 Glycosyl h 97.9 3.4E-05 7.4E-10 83.1 8.7 116 85-225 3-125 (254)
18 PF03198 Glyco_hydro_72: Gluca 97.8 0.00015 3.2E-09 79.7 12.4 154 30-221 8-179 (314)
19 PLN02705 beta-amylase 97.8 5.9E-05 1.3E-09 87.9 8.4 81 60-146 266-358 (681)
20 TIGR03356 BGL beta-galactosida 97.7 3.7E-05 8.1E-10 88.9 5.6 97 62-170 54-151 (427)
21 PLN02905 beta-amylase 97.7 0.00011 2.3E-09 86.1 8.8 80 61-146 285-376 (702)
22 PLN02801 beta-amylase 97.7 0.00011 2.4E-09 84.7 8.7 80 60-145 35-126 (517)
23 PLN00197 beta-amylase; Provisi 97.6 0.00013 2.8E-09 84.7 8.7 81 60-146 125-217 (573)
24 PLN02803 beta-amylase 97.6 0.00021 4.4E-09 82.8 8.7 80 61-146 106-197 (548)
25 PF13204 DUF4038: Protein of u 97.5 0.00027 5.8E-09 77.9 9.2 224 37-291 2-274 (289)
26 PLN02161 beta-amylase 97.5 0.00029 6.3E-09 81.2 9.2 82 60-146 115-207 (531)
27 PF01373 Glyco_hydro_14: Glyco 97.2 0.00049 1.1E-08 78.1 5.8 112 63-186 17-152 (402)
28 COG3693 XynA Beta-1,4-xylanase 96.9 0.0055 1.2E-07 67.5 10.2 133 71-226 55-194 (345)
29 PF07745 Glyco_hydro_53: Glyco 96.7 0.004 8.7E-08 69.8 7.9 103 65-191 27-136 (332)
30 PF00232 Glyco_hydro_1: Glycos 96.7 0.0017 3.7E-08 75.9 4.9 97 62-170 58-156 (455)
31 PF00331 Glyco_hydro_10: Glyco 96.7 0.0027 5.8E-08 71.0 6.2 158 49-226 11-179 (320)
32 PF14488 DUF4434: Domain of un 96.5 0.035 7.6E-07 56.5 12.7 134 57-221 15-157 (166)
33 COG2730 BglC Endoglucanase [Ca 96.5 0.0083 1.8E-07 69.3 8.8 115 60-192 66-193 (407)
34 PRK15014 6-phospho-beta-glucos 96.3 0.01 2.2E-07 69.9 8.5 96 62-169 69-167 (477)
35 PRK09852 cryptic 6-phospho-bet 96.2 0.005 1.1E-07 72.4 4.8 96 62-169 71-169 (474)
36 PF02837 Glyco_hydro_2_N: Glyc 96.1 0.0096 2.1E-07 59.5 6.0 67 648-742 66-136 (167)
37 PLN02998 beta-glucosidase 96.1 0.0061 1.3E-07 72.0 4.9 100 62-169 82-183 (497)
38 PRK10150 beta-D-glucuronidase; 96.0 0.033 7.1E-07 67.5 10.9 100 471-576 62-179 (604)
39 PLN02814 beta-glucosidase 95.9 0.0084 1.8E-07 71.0 4.8 100 62-169 77-178 (504)
40 PRK09593 arb 6-phospho-beta-gl 95.8 0.011 2.4E-07 69.5 5.7 100 62-169 73-175 (478)
41 TIGR01233 lacG 6-phospho-beta- 95.8 0.026 5.7E-07 66.3 8.6 96 62-169 53-149 (467)
42 PRK13511 6-phospho-beta-galact 95.7 0.012 2.5E-07 69.3 5.3 96 62-169 54-150 (469)
43 PRK09589 celA 6-phospho-beta-g 95.7 0.012 2.7E-07 69.2 5.2 100 62-169 67-169 (476)
44 PLN02849 beta-glucosidase 95.6 0.012 2.6E-07 69.6 4.9 100 62-169 79-180 (503)
45 PRK10340 ebgA cryptic beta-D-g 95.4 0.057 1.2E-06 69.3 9.9 94 474-576 109-206 (1021)
46 COG3867 Arabinogalactan endo-1 94.6 0.16 3.5E-06 55.6 9.0 118 63-198 64-190 (403)
47 PRK09525 lacZ beta-D-galactosi 94.5 0.14 3.1E-06 65.7 10.2 95 473-576 119-218 (1027)
48 PRK09936 hypothetical protein; 94.1 0.15 3.3E-06 55.8 7.9 57 57-120 33-91 (296)
49 PF14871 GHL6: Hypothetical gl 94.1 0.27 5.8E-06 48.3 8.9 98 66-168 4-123 (132)
50 COG2723 BglB Beta-glucosidase/ 93.6 0.083 1.8E-06 61.5 5.0 96 62-169 59-157 (460)
51 COG3934 Endo-beta-mannanase [C 92.4 0.093 2E-06 60.6 3.0 157 39-213 3-168 (587)
52 smart00812 Alpha_L_fucos Alpha 92.1 21 0.00046 41.3 21.7 245 54-352 76-337 (384)
53 TIGR01515 branching_enzym alph 91.5 2.4 5.1E-05 51.9 13.9 69 52-121 142-226 (613)
54 PF02638 DUF187: Glycosyl hydr 90.6 1 2.2E-05 50.4 9.0 117 60-188 17-162 (311)
55 COG1649 Uncharacterized protei 89.8 2.6 5.6E-05 48.9 11.4 123 59-191 61-210 (418)
56 smart00642 Aamy Alpha-amylase 89.4 0.94 2E-05 46.1 6.8 66 63-128 20-97 (166)
57 TIGR00542 hxl6Piso_put hexulos 89.3 5.5 0.00012 43.3 13.2 127 61-219 15-149 (279)
58 KOG2230 Predicted beta-mannosi 89.1 3.8 8.2E-05 48.7 12.0 150 37-226 327-494 (867)
59 PRK14706 glycogen branching en 88.3 5.3 0.00011 49.1 13.4 53 69-121 175-237 (639)
60 PRK13210 putative L-xylulose 5 85.0 6 0.00013 42.8 10.4 131 62-219 16-149 (284)
61 PRK12568 glycogen branching en 85.0 13 0.00028 46.3 14.2 55 67-123 275-341 (730)
62 PLN02447 1,4-alpha-glucan-bran 84.8 13 0.00028 46.6 14.1 60 62-122 251-321 (758)
63 PRK05402 glycogen branching en 83.6 12 0.00026 46.8 13.4 54 68-121 272-335 (726)
64 PF01229 Glyco_hydro_39: Glyco 83.6 3 6.6E-05 49.5 7.9 66 51-122 28-105 (486)
65 PRK01060 endonuclease IV; Prov 82.9 17 0.00037 39.3 12.8 93 64-185 14-109 (281)
66 PF05913 DUF871: Bacterial pro 82.4 1.8 3.9E-05 49.4 5.1 73 50-128 2-74 (357)
67 PRK09441 cytoplasmic alpha-amy 81.8 2.3 4.9E-05 50.3 5.9 68 54-121 7-101 (479)
68 PRK14705 glycogen branching en 81.6 22 0.00048 46.9 14.9 55 67-121 771-835 (1224)
69 PF00128 Alpha-amylase: Alpha 79.7 2 4.4E-05 46.1 4.2 57 65-121 7-72 (316)
70 TIGR01531 glyc_debranch glycog 79.2 5.1 0.00011 52.7 8.0 111 39-155 104-234 (1464)
71 cd00019 AP2Ec AP endonuclease 78.7 16 0.00034 39.7 10.7 97 62-187 10-107 (279)
72 PF01261 AP_endonuc_2: Xylose 77.9 7.8 0.00017 39.2 7.7 123 68-219 1-128 (213)
73 PRK09856 fructoselysine 3-epim 75.9 34 0.00073 36.9 12.3 130 62-219 13-145 (275)
74 PF13200 DUF4015: Putative gly 75.3 8 0.00017 43.5 7.4 112 60-172 11-137 (316)
75 PRK13209 L-xylulose 5-phosphat 74.8 17 0.00037 39.4 9.7 125 63-219 22-154 (283)
76 TIGR03234 OH-pyruv-isom hydrox 74.4 50 0.0011 35.2 13.0 43 63-119 15-57 (254)
77 TIGR02402 trehalose_TreZ malto 73.9 5.7 0.00012 47.9 6.2 53 66-121 115-180 (542)
78 PF14307 Glyco_tran_WbsX: Glyc 73.6 31 0.00067 39.2 11.7 135 59-223 55-195 (345)
79 PRK09997 hydroxypyruvate isome 73.4 49 0.0011 35.5 12.7 49 54-119 10-58 (258)
80 PF11875 DUF3395: Domain of un 73.0 6.6 0.00014 39.5 5.4 16 856-871 116-133 (151)
81 COG3623 SgaU Putative L-xylulo 72.3 54 0.0012 35.6 12.0 24 61-84 17-40 (287)
82 PF14683 CBM-like: Polysacchar 71.8 3.6 7.9E-05 42.0 3.3 63 673-746 91-153 (167)
83 TIGR02631 xylA_Arthro xylose i 70.8 53 0.0012 38.0 12.9 91 60-169 30-125 (382)
84 PRK09989 hypothetical protein; 70.0 33 0.00072 36.8 10.5 43 63-119 16-58 (258)
85 PLN02960 alpha-amylase 69.8 1.3E+02 0.0027 38.7 16.4 57 65-121 420-486 (897)
86 PF02679 ComA: (2R)-phospho-3- 69.4 7 0.00015 42.4 5.0 52 61-122 83-134 (244)
87 PF02065 Melibiase: Melibiase; 69.0 43 0.00093 39.0 11.6 90 54-143 50-148 (394)
88 cd06593 GH31_xylosidase_YicI Y 68.6 8.9 0.00019 42.6 5.9 69 59-127 21-92 (308)
89 PRK13398 3-deoxy-7-phosphohept 68.2 21 0.00046 39.2 8.5 81 31-121 14-98 (266)
90 TIGR02104 pulA_typeI pullulana 66.6 9.9 0.00022 46.5 6.2 55 66-121 168-249 (605)
91 PRK12313 glycogen branching en 66.6 11 0.00024 46.4 6.5 54 68-121 177-240 (633)
92 TIGR02403 trehalose_treC alpha 66.0 9.5 0.00021 46.0 5.8 57 63-121 28-95 (543)
93 PRK10785 maltodextrin glucosid 66.0 11 0.00024 46.0 6.4 57 65-121 182-246 (598)
94 smart00518 AP2Ec AP endonuclea 65.3 92 0.002 33.5 12.8 92 64-185 12-104 (273)
95 PRK09505 malS alpha-amylase; R 65.2 12 0.00026 46.4 6.5 58 64-121 232-312 (683)
96 PRK14582 pgaB outer membrane N 64.6 25 0.00054 43.6 8.9 110 62-189 334-467 (671)
97 PF13199 Glyco_hydro_66: Glyco 64.4 12 0.00025 45.4 6.0 79 61-139 117-210 (559)
98 KOG0496 Beta-galactosidase [Ca 64.3 1.8 3.9E-05 52.2 -0.7 60 795-854 331-390 (649)
99 PLN00196 alpha-amylase; Provis 63.2 41 0.00089 39.5 10.1 57 65-121 47-112 (428)
100 PRK10933 trehalose-6-phosphate 63.1 15 0.00032 44.5 6.7 55 64-121 35-101 (551)
101 PF08531 Bac_rhamnosid_N: Alph 62.8 26 0.00057 35.7 7.5 92 497-591 6-113 (172)
102 PF06832 BiPBP_C: Penicillin-B 62.2 14 0.00031 33.3 4.9 50 497-554 34-84 (89)
103 COG0296 GlgB 1,4-alpha-glucan 61.6 15 0.00033 44.9 6.3 56 61-120 164-233 (628)
104 PF14587 Glyco_hydr_30_2: O-Gl 61.6 40 0.00086 39.0 9.3 122 90-226 93-227 (384)
105 KOG0626 Beta-glucosidase, lact 61.1 15 0.00034 43.7 6.1 113 63-185 92-208 (524)
106 TIGR02456 treS_nterm trehalose 60.0 18 0.0004 43.5 6.7 57 63-121 29-96 (539)
107 PF11324 DUF3126: Protein of u 59.6 25 0.00054 30.4 5.5 24 503-526 25-48 (63)
108 COG3589 Uncharacterized conser 59.2 17 0.00036 41.1 5.6 72 50-128 4-76 (360)
109 cd04908 ACT_Bt0572_1 N-termina 58.9 31 0.00067 29.1 6.1 55 61-119 12-66 (66)
110 TIGR03849 arch_ComA phosphosul 58.1 19 0.00041 39.0 5.7 53 60-122 69-121 (237)
111 cd06545 GH18_3CO4_chitinase Th 57.3 42 0.00092 36.1 8.3 96 92-216 36-132 (253)
112 PF03659 Glyco_hydro_71: Glyco 57.2 34 0.00074 39.7 8.0 54 59-121 14-67 (386)
113 cd06589 GH31 The enzymes of gl 57.0 32 0.00069 37.5 7.3 65 60-125 22-90 (265)
114 cd06592 GH31_glucosidase_KIAA1 56.7 25 0.00055 39.1 6.7 68 57-127 25-96 (303)
115 PF01791 DeoC: DeoC/LacD famil 56.6 4.3 9.4E-05 43.3 0.6 53 65-120 79-131 (236)
116 PRK14510 putative bifunctional 53.1 20 0.00044 47.4 5.9 56 66-121 191-267 (1221)
117 PF01120 Alpha_L_fucos: Alpha- 53.0 3.9E+02 0.0085 30.4 18.3 230 67-350 96-342 (346)
118 cd06591 GH31_xylosidase_XylS X 51.6 24 0.00053 39.5 5.5 66 60-126 22-91 (319)
119 TIGR02401 trehalose_TreY malto 51.4 31 0.00067 43.7 6.8 65 60-124 14-88 (825)
120 PLN02361 alpha-amylase 49.3 37 0.00079 39.6 6.6 57 65-121 32-96 (401)
121 PRK09875 putative hydrolase; P 48.7 1.2E+02 0.0025 34.0 10.2 89 32-140 7-95 (292)
122 cd02742 GH20_hexosaminidase Be 47.9 38 0.00082 37.7 6.3 59 59-120 13-91 (303)
123 PRK14511 maltooligosyl trehalo 47.6 39 0.00084 43.1 6.8 64 60-127 18-95 (879)
124 PF02055 Glyco_hydro_30: O-Gly 47.6 84 0.0018 37.7 9.4 275 45-346 74-424 (496)
125 cd06598 GH31_transferase_CtsZ 47.4 33 0.00071 38.5 5.7 67 60-126 22-95 (317)
126 PF08308 PEGA: PEGA domain; I 47.4 20 0.00043 30.7 3.1 22 498-519 3-24 (71)
127 TIGR02100 glgX_debranch glycog 47.1 29 0.00062 43.3 5.6 55 67-121 189-265 (688)
128 cd06602 GH31_MGAM_SI_GAA This 47.0 31 0.00068 39.1 5.5 74 54-128 13-93 (339)
129 PRK12677 xylose isomerase; Pro 46.6 1.8E+02 0.0038 33.8 11.5 90 62-169 31-124 (384)
130 TIGR00677 fadh2_euk methylenet 46.4 63 0.0014 35.8 7.6 108 48-169 130-250 (281)
131 PRK14507 putative bifunctional 46.3 38 0.00083 46.1 6.8 61 60-123 756-829 (1693)
132 smart00854 PGA_cap Bacterial c 46.1 1.6E+02 0.0034 31.5 10.4 45 65-118 63-107 (239)
133 cd06603 GH31_GANC_GANAB_alpha 44.9 34 0.00075 38.6 5.4 74 54-128 13-91 (339)
134 cd06416 GH25_Lys1-like Lys-1 i 42.5 42 0.00092 34.7 5.3 88 51-141 55-157 (196)
135 cd06599 GH31_glycosidase_Aec37 42.2 50 0.0011 37.0 6.1 66 61-126 28-98 (317)
136 cd06565 GH20_GcnA-like Glycosy 42.0 1.2E+02 0.0025 33.9 8.9 59 60-121 15-80 (301)
137 cd06600 GH31_MGAM-like This fa 41.6 42 0.00091 37.6 5.4 72 54-126 13-89 (317)
138 cd06418 GH25_BacA-like BacA is 41.5 1.1E+02 0.0023 32.7 8.1 90 60-171 50-140 (212)
139 PRK03705 glycogen debranching 41.3 43 0.00094 41.5 5.9 55 67-121 184-262 (658)
140 TIGR02102 pullulan_Gpos pullul 40.9 44 0.00095 43.8 6.0 21 101-121 555-575 (1111)
141 KOG3833 Uncharacterized conser 40.9 27 0.00058 39.1 3.6 53 63-121 444-499 (505)
142 KOG4729 Galactoside-binding le 40.9 38 0.00082 37.0 4.6 81 790-872 143-231 (265)
143 PRK08673 3-deoxy-7-phosphohept 40.8 91 0.002 35.6 7.9 81 32-121 81-164 (335)
144 PF08531 Bac_rhamnosid_N: Alph 40.1 30 0.00066 35.2 3.7 23 668-690 7-29 (172)
145 KOG2024 Beta-Glucuronidase GUS 39.8 38 0.00082 37.2 4.4 50 470-520 84-133 (297)
146 cd06604 GH31_glucosidase_II_Ma 39.3 49 0.0011 37.4 5.6 73 54-127 13-90 (339)
147 cd06595 GH31_xylosidase_XylS-l 39.0 59 0.0013 36.0 6.0 71 54-124 14-97 (292)
148 cd06601 GH31_lyase_GLase GLase 38.5 1.5E+02 0.0032 33.7 9.2 72 54-126 13-89 (332)
149 PRK14565 triosephosphate isome 36.4 1E+02 0.0022 33.4 7.1 87 67-164 77-186 (237)
150 PRK10076 pyruvate formate lyas 36.3 1.3E+02 0.0028 32.0 7.8 133 61-220 53-210 (213)
151 COG3915 Uncharacterized protei 36.1 1.1E+02 0.0024 30.5 6.5 47 67-119 39-87 (155)
152 cd06568 GH20_SpHex_like A subg 35.8 65 0.0014 36.4 5.8 61 60-120 16-94 (329)
153 KOG0259 Tyrosine aminotransfer 35.7 49 0.0011 38.2 4.6 64 53-120 173-238 (447)
154 COG5309 Exo-beta-1,3-glucanase 35.4 2E+02 0.0043 32.0 8.9 119 60-226 61-179 (305)
155 PF07691 PA14: PA14 domain; I 35.1 1.8E+02 0.0039 27.7 8.1 71 475-553 47-123 (145)
156 COG1306 Uncharacterized conser 34.3 80 0.0017 35.4 5.8 59 60-121 75-144 (400)
157 PF08924 DUF1906: Domain of un 34.0 98 0.0021 30.5 6.0 90 60-171 36-128 (136)
158 PRK00042 tpiA triosephosphate 33.4 66 0.0014 35.1 5.1 50 67-122 78-127 (250)
159 PLN02877 alpha-amylase/limit d 33.2 77 0.0017 41.0 6.3 21 101-121 466-486 (970)
160 cd07381 MPP_CapA CapA and rela 33.0 3.1E+02 0.0067 29.1 10.2 45 65-118 67-111 (239)
161 PF01055 Glyco_hydro_31: Glyco 32.8 75 0.0016 37.0 5.9 69 60-129 41-111 (441)
162 TIGR02455 TreS_stutzeri trehal 32.4 1.1E+02 0.0023 38.0 7.0 76 60-139 76-176 (688)
163 PRK09856 fructoselysine 3-epim 32.1 58 0.0013 35.0 4.5 56 62-121 90-149 (275)
164 cd06597 GH31_transferase_CtsY 32.0 83 0.0018 35.7 5.9 73 54-126 13-110 (340)
165 cd06563 GH20_chitobiase-like T 31.9 1.7E+02 0.0036 33.5 8.3 59 59-120 15-105 (357)
166 PLN03059 beta-galactosidase; P 30.9 1.6E+02 0.0035 37.5 8.5 43 648-690 468-517 (840)
167 COG1523 PulA Type II secretory 30.7 72 0.0016 39.8 5.4 55 67-121 205-285 (697)
168 TIGR00433 bioB biotin syntheta 30.1 78 0.0017 34.6 5.1 52 65-119 123-176 (296)
169 cd00311 TIM Triosephosphate is 30.0 1E+02 0.0022 33.5 5.9 49 68-122 77-125 (242)
170 PF02228 Gag_p19: Major core p 30.0 24 0.00051 31.7 0.8 37 60-113 20-56 (92)
171 TIGR02103 pullul_strch alpha-1 28.8 89 0.0019 40.2 5.9 21 101-121 404-424 (898)
172 PRK09267 flavodoxin FldA; Vali 28.7 2.9E+02 0.0064 27.5 8.7 74 42-118 44-117 (169)
173 PF01261 AP_endonuc_2: Xylose 28.4 56 0.0012 32.9 3.5 64 61-125 70-136 (213)
174 PRK12858 tagatose 1,6-diphosph 28.0 74 0.0016 36.4 4.5 65 54-121 99-163 (340)
175 smart00481 POLIIIAc DNA polyme 28.0 1.8E+02 0.0038 24.5 5.9 46 62-120 15-60 (67)
176 PF00728 Glyco_hydro_20: Glyco 28.0 75 0.0016 35.6 4.7 58 60-120 16-92 (351)
177 PRK12331 oxaloacetate decarbox 28.0 1.2E+02 0.0025 36.1 6.3 55 54-120 88-142 (448)
178 COG0366 AmyA Glycosidases [Car 27.7 1.1E+02 0.0023 35.8 6.0 55 66-120 33-96 (505)
179 PLN02784 alpha-amylase 26.8 1.2E+02 0.0027 38.6 6.5 56 65-121 524-588 (894)
180 PF12876 Cellulase-like: Sugar 26.8 92 0.002 28.1 4.1 46 177-222 7-61 (88)
181 cd01299 Met_dep_hydrolase_A Me 26.2 1.2E+02 0.0027 33.5 5.9 61 60-121 118-180 (342)
182 PRK11372 lysozyme inhibitor; P 25.8 1.3E+02 0.0028 28.7 5.1 19 7-25 1-19 (109)
183 PRK13210 putative L-xylulose 5 25.7 97 0.0021 33.4 4.9 59 62-121 94-153 (284)
184 cd07937 DRE_TIM_PC_TC_5S Pyruv 25.5 1.5E+02 0.0033 32.5 6.4 49 59-119 88-136 (275)
185 cd06564 GH20_DspB_LnbB-like Gl 25.3 1.8E+02 0.004 32.6 7.1 58 60-120 15-101 (326)
186 KOG0622 Ornithine decarboxylas 25.2 98 0.0021 36.2 4.8 67 59-135 190-257 (448)
187 TIGR00419 tim triosephosphate 25.0 1.4E+02 0.003 31.7 5.7 44 68-121 74-117 (205)
188 COG1891 Uncharacterized protei 24.1 27 0.00059 36.1 0.2 65 48-120 117-186 (235)
189 PTZ00372 endonuclease 4-like p 24.1 3.7E+02 0.0081 31.6 9.4 115 42-188 153-275 (413)
190 PF14701 hDGE_amylase: glucano 23.9 2.7E+02 0.0059 32.8 8.2 109 55-169 13-143 (423)
191 PRK13209 L-xylulose 5-phosphat 23.7 3.3E+02 0.0071 29.4 8.5 103 59-191 54-161 (283)
192 COG1306 Uncharacterized conser 23.2 1.4E+02 0.0029 33.7 5.2 120 41-177 163-302 (400)
193 PRK10426 alpha-glucosidase; Pr 23.0 4.3E+02 0.0093 32.9 10.1 64 63-126 222-294 (635)
194 PRK09997 hydroxypyruvate isome 23.0 1.1E+02 0.0024 32.8 4.6 59 62-121 85-144 (258)
195 PRK08645 bifunctional homocyst 22.6 2.5E+02 0.0054 34.6 8.0 110 44-169 460-578 (612)
196 cd06562 GH20_HexA_HexB-like Be 22.5 2.9E+02 0.0063 31.5 8.0 62 59-120 15-89 (348)
197 PF07009 DUF1312: Protein of u 22.4 3.6E+02 0.0077 25.6 7.4 80 675-806 27-107 (113)
198 cd02871 GH18_chitinase_D-like 22.1 3.4E+02 0.0073 30.3 8.4 87 101-216 60-146 (312)
199 TIGR01698 PUNP purine nucleoti 22.1 1.2E+02 0.0026 33.0 4.5 41 41-81 47-88 (237)
200 cd04882 ACT_Bt0572_2 C-termina 21.8 1.7E+02 0.0037 23.7 4.6 55 61-117 10-64 (65)
201 PLN02429 triosephosphate isome 21.8 1.4E+02 0.003 33.9 5.1 45 68-122 140-188 (315)
202 TIGR00676 fadh2 5,10-methylene 21.6 3E+02 0.0066 30.1 7.7 108 47-169 125-246 (272)
203 PRK14040 oxaloacetate decarbox 21.5 1.4E+02 0.0031 36.6 5.6 53 54-118 89-141 (593)
204 PRK10658 putative alpha-glucos 21.4 1.9E+02 0.0041 36.1 6.7 66 61-127 282-351 (665)
205 PLN02389 biotin synthase 21.3 1.2E+02 0.0026 35.1 4.7 52 64-118 177-230 (379)
206 KOG1065 Maltase glucoamylase a 20.9 1.6E+02 0.0035 37.2 5.8 63 62-129 311-379 (805)
207 TIGR00542 hxl6Piso_put hexulos 20.8 1.5E+02 0.0032 32.2 5.0 58 63-121 95-153 (279)
208 PRK06703 flavodoxin; Provision 20.7 5E+02 0.011 25.3 8.4 100 42-169 46-148 (151)
209 PRK15492 triosephosphate isome 20.7 1.9E+02 0.0042 31.8 5.9 49 68-122 87-135 (260)
210 cd06525 GH25_Lyc-like Lyc mura 20.5 73 0.0016 32.6 2.5 42 101-142 103-148 (184)
211 COG1735 Php Predicted metal-de 20.3 4.4E+02 0.0095 29.9 8.4 154 30-226 15-173 (316)
212 TIGR00587 nfo apurinic endonuc 20.2 6.7E+02 0.014 27.3 10.0 83 65-169 14-98 (274)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=5.4e-220 Score=1914.42 Aligned_cols=832 Identities=75% Similarity=1.338 Sum_probs=764.9
Q ss_pred hHHHHHHHHHhcCCCCcccceeEEEccCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCC
Q 002867 11 NVLLILLLGCSGLFAPVEVEGSVSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP 90 (872)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~idG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp 90 (872)
.++|||+|.+++.+-.--...+|++|+++|+|||+|++|+||||||||+||++|+|+|+||||+|||||+||||||+|||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp 87 (840)
T PLN03059 8 VFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP 87 (840)
T ss_pred hhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCC
Confidence 34444444444333222236689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 002867 91 SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (872)
Q Consensus 91 ~~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~ 170 (872)
+||+|||+|++||++||++|+|+||+|||||||||||||++||+|.||+++|+|++||+||+|+++|++|+++|++++++
T Consensus 88 ~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~ 167 (840)
T PLN03059 88 SPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKS 167 (840)
T ss_pred CCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccCCceEeecccccccCcccccCCCCHHHHHHHHHHHHhcCCCcceEeeCCCCCCCccccCCCCcccccCCCCCC
Q 002867 171 ERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQDDAPDPLINTCNGFYCDYFSPNKA 250 (872)
Q Consensus 171 ~~~~~~~gGpII~vQiENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~vp~~~~~~~~~~~~~~~~~ng~~~~~~~~~~p 250 (872)
+++++++||||||+|||||||++...++.+|++||+||+++++++|++|||+||++.+++++++++|||.+|+.|.+.++
T Consensus 168 ~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~ 247 (840)
T PLN03059 168 EKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKD 247 (840)
T ss_pred cceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCC
Confidence 89999999999999999999998766777899999999999999999999999999888889999999988999988878
Q ss_pred CCCceeeecccccccccCCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeecCCCCCCCCCCCcccccCCCCCCCCcCCCC
Q 002867 251 YKPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLL 330 (872)
Q Consensus 251 ~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdApl~E~G~~ 330 (872)
.+|+|++|||+|||++||++++.|+++|++.+++++|++|+|++||||||||||||||||+++++|||||||||+|+|++
T Consensus 248 ~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~ 327 (840)
T PLN03059 248 YKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLP 327 (840)
T ss_pred CCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCc
Confidence 79999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHhhcCCccCCCCccccCCCccceeeeecCCceeeeeecccccceeEEEeCCceeccCCcceeecC
Q 002867 331 RQPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILP 410 (872)
Q Consensus 331 ~t~Ky~~lr~l~~~i~~~~~~l~~~~p~~~~~g~~~~~~~y~~~~~~~~fl~n~~~~~~~~v~~~~~~~~lp~~~v~i~~ 410 (872)
|+|||.+||++|.+++.++++|+..+|....+|+.+++++|...+.|++|+.|++.+.+++|+|+|.+|.||+|||+|||
T Consensus 328 t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilp 407 (840)
T PLN03059 328 REPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKSACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILP 407 (840)
T ss_pred chhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCccchhhheeccCCCCceeEEECCcccccCccceeecc
Confidence 76899999999999999988888777878889999999999855589999999998889999999999999999999999
Q ss_pred CCCccccccceecccccccccccCCCCCCCCcccccCC-CccCCCCCccccchhhhhCCCCCCcceEEEEEEecCCCCCc
Q 002867 411 DCKNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEV-PSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEG 489 (872)
Q Consensus 411 ~~~~~~~~t~~v~~~~~~~~~~~~~~~~~~~w~~~~e~-~~~~~~~~~~~~~~~Eql~~t~d~~GyllYrt~i~~~~~~~ 489 (872)
||+.++|+|+++++|++.+++.+.. ..+.|+++.|+ .+...+.+++|++++|||++|+|.+||+||||+|..+..+.
T Consensus 408 d~~~~lfnta~v~~q~~~~~~~~~~--~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~ 485 (840)
T PLN03059 408 DCKTAVFNTARLGAQSSQMKMNPVG--STFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEG 485 (840)
T ss_pred cccceeeeccccccccceeeccccc--ccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCcc
Confidence 9999999999999998877665433 56699999999 44455678999999999999999999999999998876665
Q ss_pred cccCCCcceEEecCcceEEEEEECCEEEEEEEcccCCCeeEEEeeeeccCCccEEEEEEeccCCccccCCCCccccceec
Q 002867 490 FLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLG 569 (872)
Q Consensus 490 ~~~~~~~~~L~v~~~~d~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~~~~kGI~g 569 (872)
.++++.+++|+|.+++|+|||||||+++|+++++.....++++.+++++.|.|+|+||||||||+|||++|+++.|||+|
T Consensus 486 ~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g 565 (840)
T PLN03059 486 FLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLG 565 (840)
T ss_pred ccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccc
Confidence 55677889999999999999999999999999887667788888888889999999999999999999999999999999
Q ss_pred cEEEccccCCcccCccCCcEEEEeccccccccccchhhhhhhhhhhhcccCccccccccccCCCCCCcccccCCccCCCC
Q 002867 570 PVTLNGLNEGRRDLSWQKWTYKVCLQSLKYGFLVSLTFWILIEVCLLNQIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQ 649 (872)
Q Consensus 570 ~V~L~g~~~~~~~L~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gL~gE~~~~~~~~~~~~~~W~~~~~~~~~~ 649 (872)
+|+|+|.+.++.+|+++.|.|+ +||.||.++++.+++..+++|.+.+..+..+
T Consensus 566 ~V~i~g~~~g~~dls~~~W~y~---------------------------lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~ 618 (840)
T PLN03059 566 PVTLKGLNEGTRDLSGWKWSYK---------------------------IGLKGEALSLHTITGSSSVEWVEGSLLAQKQ 618 (840)
T ss_pred cEEEecccCCceecccCccccc---------------------------cCccceeccccccCCCCCccccccccccCCC
Confidence 9999998888899988888888 8999999999887666788998765444456
Q ss_pred CceEEEEEEECCCCCCceEEEeCCCceEEEEECCeeccccccccccCCCCCcccccCccccccccCCCCCCceeeeecCc
Q 002867 650 PLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPR 729 (872)
Q Consensus 650 ~~~fY~~tF~lp~~~dp~~Ld~~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~~G~~~~~~~~~~~g~PQqtlY~VP~ 729 (872)
+++|||++|++|++.|||||||++||||+|||||+||||||+.+...+.|+.|||+|+|+++||+||||+|||+|||||+
T Consensus 619 p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~lYHVPr 698 (840)
T PLN03059 619 PLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPR 698 (840)
T ss_pred CceEEEEEEeCCCCCCCEEEecccCCCeeEEECCcccccccccccccCCCccccccccccchhhhccCCCceeEEEeCcH
Confidence 79999999999999999999999999999999999999999763233445889999999999999999999999999999
Q ss_pred cccccCCceEEEEEecCCCCCcEEEeeechhhhhhhhhccCccccccccccCCCcCCCCCCceEEecCCCCeEEEEeeec
Q 002867 730 SWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFAS 809 (872)
Q Consensus 730 ~~Lk~g~N~IvvfEe~g~~p~~i~~~~~~~~~ic~~~~e~~~~~~~~w~~~~~~~~~~~~~~~~L~C~~G~~I~~I~~A~ 809 (872)
+|||+|+|+||||||+|++|..|+|.++.+++||++|+|+|| +|++|.+.+....+...+.++|+||.|++|+.|.||+
T Consensus 699 ~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~~~~c~~~~e~~p-~~~~w~~~~~~~~~~~~~~~~L~C~~G~~Is~I~fAs 777 (840)
T PLN03059 699 SWLKPSGNLLIVFEEWGGNPAGISLVKRTTDSVCADIFEGQP-ALKNWQIIASGKVNSLQPKAHLWCPPGQKISKIKFAS 777 (840)
T ss_pred HHhccCCceEEEEEecCCCCCceEEEEeecCcccccccccCC-ccccccccccccccccCCcEEEECCCCceEEEEEEec
Confidence 999999999999999999999999999999999999999995 6999999443333567889999999999998899999
Q ss_pred CCCCCCCCCCccCCceecCChHHHHHhhcCCCCCceEEecCCCCCCCCCCCCceeEEEEEEeC
Q 002867 810 FGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEAICG 872 (872)
Q Consensus 810 YGr~~~~C~~~~~~~C~~~~sl~~V~~~C~Gk~~C~v~a~~~~Fg~DPC~gt~KyL~v~y~C~ 872 (872)
||||.++|+++++++|++++|+++|+++|+||++|+|.|++.+||+|||+||+|||+|+|.|+
T Consensus 778 YGrp~gtC~~~~~g~C~a~~S~~vV~kaC~Gk~~CsV~asn~~FggDPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 778 FGVPQGTCGSFREGSCHAHKSYDAFERNCIGKQSCSVTVAPEVFGGDPCPDSMKKLSVEAVCS 840 (840)
T ss_pred CCCCCCCCCCCCCCCEeCCcHHHHHHHHCCCCCceEEEeccceecCCCCCCceeEEEEEEEeC
Confidence 999999999999999999999999999999999999999999997799999999999999996
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-151 Score=1289.36 Aligned_cols=630 Identities=64% Similarity=1.147 Sum_probs=581.0
Q ss_pred ceeEEEccCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHH
Q 002867 30 EGSVSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKL 109 (872)
Q Consensus 30 ~~~v~~d~~~~~idG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~l 109 (872)
++.|+||+++|++||+|++++||+|||||++|++|+|+|+|||++|+|+|+||||||.|||.||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc
Q 002867 110 AKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENE 189 (872)
Q Consensus 110 a~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENE 189 (872)
|++.||+|+||+||||||||++||+|.||...|++.+||+|++|+++|++|+++|++.+| +|++++||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999998898999999999999999999999999999999 999999999999999999
Q ss_pred ccCcccccCCCCHHHHHHHHHHHHhcCCCcceEeeCCCCCCCccccCCCCccc-ccCC-CCCCCCCceeeeccccccccc
Q 002867 190 YGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQDDAPDPLINTCNGFYC-DYFS-PNKAYKPKMWTEAWTGWYTEF 267 (872)
Q Consensus 190 yg~~~~~~~~~~~~y~~~l~~~~~~~gi~vp~~~~~~~~~~~~~~~~~ng~~~-~~~~-~~~p~~P~~~~E~~~Gwf~~W 267 (872)
||.+...|++..++|++|-..|+...+.+|||+||.+.++|++++++|||.+| +.|. +++|++|+||||||+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99887778888899999999999999999999999999999999999999999 8887 999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeecCCCCCCCCCCCcccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHh
Q 002867 268 GGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKL 347 (872)
Q Consensus 268 G~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~i~~ 347 (872)
|++++.|++|+++..+++++++|+|++||||||||||||++|| ++.+|||||||||| |.+++|||.|+|.+|..+..
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999999999999999999999998 99999999999999 99999999999999999999
Q ss_pred hcCCccCCCCccccCCCccceeeeecCCceeeeeecccccceeEEEeCCceeccCCcceeecCCCCccccccceeccccc
Q 002867 348 CEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQST 427 (872)
Q Consensus 348 ~~~~l~~~~p~~~~~g~~~~~~~y~~~~~~~~fl~n~~~~~~~~v~~~~~~~~lp~~~v~i~~~~~~~~~~t~~v~~~~~ 427 (872)
+++.+...++....+|+.+ +.|+.|+.|++......+.|++..+.+|+|+++|++||++++|+|+++.++
T Consensus 332 ~ep~lv~gd~~~~kyg~~~--------~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~-- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLR--------EACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ-- 401 (649)
T ss_pred cCccccccCcccccccchh--------hHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc--
Confidence 9998877776665554433 359999999998888899999999999999999999999999999976543
Q ss_pred ccccccCCCCCCCCcccccCCCccCCCCCccccchhhhhCCCCCCcceEEEEEEecCCCCCccccCCCcceEEec-Ccce
Q 002867 428 QMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVM-SAGH 506 (872)
Q Consensus 428 ~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~Eql~~t~d~~GyllYrt~i~~~~~~~~~~~~~~~~L~v~-~~~d 506 (872)
|....||++ +|..+| .+||++|++.++.+.++. +.|+|. +++|
T Consensus 402 --------------~~~~~e~~~------------~~~~~~---~~~~ll~~~~~t~d~sd~-------t~~~i~ls~g~ 445 (649)
T KOG0496|consen 402 --------------WISFTEPIP------------SEAVGQ---SFGGLLEQTNLTKDKSDT-------TSLKIPLSLGH 445 (649)
T ss_pred --------------cccccCCCc------------cccccC---cceEEEEEEeeccccCCC-------ceEeecccccc
Confidence 544556643 366666 889999999998776652 468888 9999
Q ss_pred EEEEEECCEEEEEEEcccCCCeeEEEeeeeccCCccEEEEEEeccCCccccCCCCccccceeccEEEccccCCcccCccC
Q 002867 507 ALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQ 586 (872)
Q Consensus 507 ~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~~~~kGI~g~V~L~g~~~~~~~L~~~ 586 (872)
++||||||+++|+++++.....+.+..++.|..|.|+|+|||||+||+||| +++++.|||+|+|+|+|. ++++++
T Consensus 446 ~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~ 520 (649)
T KOG0496|consen 446 ALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWT 520 (649)
T ss_pred eEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----ecccee
Confidence 999999999999999987666788888888999999999999999999999 889999999999999997 577767
Q ss_pred CcEEEEeccccccccccchhhhhhhhhhhhcccCccccccccccCCCCCCcccccCCccCCCCCceEEEEEEECCCCCCc
Q 002867 587 KWTYKVCLQSLKYGFLVSLTFWILIEVCLLNQIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAP 666 (872)
Q Consensus 587 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gL~gE~~~~~~~~~~~~~~W~~~~~~~~~~~~~fY~~tF~lp~~~dp 666 (872)
.|.|+ .||.+|.+..+.+++..+++|...+..+..+|.+||+ +|++|++.+|
T Consensus 521 ~w~~~---------------------------~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~ 572 (649)
T KOG0496|consen 521 KWPYK---------------------------VGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEP 572 (649)
T ss_pred eccee---------------------------cccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCC
Confidence 78787 7899999999999888889998876544447889998 9999999999
Q ss_pred eEEEeCCCceEEEEECCeeccccccccccCCCCCcccccCccccccccCCCCCCceeeeecCccccccCCceEEEEEecC
Q 002867 667 LALDMGSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWG 746 (872)
Q Consensus 667 ~~Ld~~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~~G~~~~~~~~~~~g~PQqtlY~VP~~~Lk~g~N~IvvfEe~g 746 (872)
|||||.|||||+|||||+|||||||++ | ||+++| ||++|||++.|+||||||++
T Consensus 573 t~Ldm~g~GKG~vwVNG~niGRYW~~~------------G-------------~Q~~yh-vPr~~Lk~~~N~lvvfEee~ 626 (649)
T KOG0496|consen 573 TALDMNGWGKGQVWVNGQNIGRYWPSF------------G-------------PQRTYH-VPRSWLKPSGNLLVVFEEEG 626 (649)
T ss_pred eEEecCCCcceEEEECCcccccccCCC------------C-------------CceEEE-CcHHHhCcCCceEEEEEecc
Confidence 999999999999999999999999874 5 876655 99999999999999999999
Q ss_pred CCCCcEEEeeechhhhhhhhhcc
Q 002867 747 GNPNGISLVRREIDSVCAYMYEW 769 (872)
Q Consensus 747 ~~p~~i~~~~~~~~~ic~~~~e~ 769 (872)
++|..|+|+++++..+|+.+.|+
T Consensus 627 ~~p~~i~~~~~~~~~~~~~v~~~ 649 (649)
T KOG0496|consen 627 GDPNGISFVTRPVLSTCAYVREH 649 (649)
T ss_pred CCCccceEEEeEeeeEeeecccC
Confidence 99999999999999999998764
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=2.4e-88 Score=743.97 Aligned_cols=297 Identities=43% Similarity=0.814 Sum_probs=230.1
Q ss_pred cEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 002867 39 AIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (872)
Q Consensus 39 ~~~idG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vi 118 (872)
+|+|||||++++|||+||||+|+++|+|+|+||||+|+|||+|||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccC
Q 002867 119 LRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIG 198 (872)
Q Consensus 119 lrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg~~~~~~~ 198 (872)
|||||||||||++||+|.||++++++++|++||.|+++|++|+++|+++++ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999998999999999999999999999999999 8999999999999999999953
Q ss_pred CCCHHHHHHHHHHHHhcCCC-cceEeeCCC--------CCCCccccCCCCccccc--------CCCCCCCCCceeeeccc
Q 002867 199 APGRSYTRWAAKMAVGLGTG-VPWIMCKQD--------DAPDPLINTCNGFYCDY--------FSPNKAYKPKMWTEAWT 261 (872)
Q Consensus 199 ~~~~~y~~~l~~~~~~~gi~-vp~~~~~~~--------~~~~~~~~~~ng~~~~~--------~~~~~p~~P~~~~E~~~ 261 (872)
.++++||+.|++++++.|++ +++++++.. +.++..+.+++++.|.. ....+|++|+|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999998 667777652 12222233333334421 12446889999999999
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeecCCCCCCCCCCCcc----cccCCCCCCCCcCCCCCchhHHH
Q 002867 262 GWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFI----ATSYDYDAPLDEYGLLRQPKWGH 337 (872)
Q Consensus 262 Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~----~TSYDYdApl~E~G~~~t~Ky~~ 337 (872)
|||++||++++.+++++++..+++++++|.+ +||||||||||||+++|++.. +|||||||||+|+|++ +|||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999966 799999999999999877654 5999999999999999 599999
Q ss_pred HHHHHHH
Q 002867 338 LKDLHRA 344 (872)
Q Consensus 338 lr~l~~~ 344 (872)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999864
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-37 Score=360.70 Aligned_cols=290 Identities=24% Similarity=0.318 Sum_probs=216.0
Q ss_pred EEEccCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEE-cccCCccCCCCceeeeccchhHHHHHHHHH
Q 002867 33 VSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYYFEGNYDLVKFIKLAK 111 (872)
Q Consensus 33 v~~d~~~~~idG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~GlN~V~t-yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~ 111 (872)
|.+++..+++||+|++++||.+||+|+|++.|.|||+|||++|+|+|++ |+.||+|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3578899999999999999999999999999999999999999999999 99999999999999999 78888 999999
Q ss_pred HcCCEEEEecCc-ccceecCCCCCCcccccCCCeeee---------cCChhhHHHHHHHHHHHHHHHHhcccccccCCce
Q 002867 112 QAGLYVNLRIGP-YVCAEWNFGGFPVWLKYIPGINFR---------TENGPFKAEMHKFTKKIVDMMKAERLFESQGGPI 181 (872)
Q Consensus 112 ~~GL~VilrpGP-yicaEw~~GGlP~WL~~~p~~~~R---------t~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpI 181 (872)
+.||+||||||| ..|.+|..+++|.||..++.-..| .+++.|++++++.+.+|.+++ +++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 999999999999999876642222 346678888777555444443 5789999
Q ss_pred EeecccccccCcccccCCCCHHHHHHHHHHHHhc-CCCcceEeeCCC-CCC-CccccCCC-----Cccc--ccCCCCCCC
Q 002867 182 ILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGL-GTGVPWIMCKQD-DAP-DPLINTCN-----GFYC--DYFSPNKAY 251 (872)
Q Consensus 182 I~vQiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-gi~vp~~~~~~~-~~~-~~~~~~~n-----g~~~--~~~~~~~p~ 251 (872)
|+||++||||++.+.+..|.+.+..||++.+-.. .++.+|=+.--+ +.. -..|.+.+ .... -+|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999976666678899999999877211 122232111100 000 00111111 0000 012212222
Q ss_pred C----Cceeeecccccc-cccCCCCCCCC-hHHHHHHHHHHHHcCCeeeeeeeeecCCCCC------CCCCCC---c---
Q 002867 252 K----PKMWTEAWTGWY-TEFGGPVPHRP-VEDLAFSVAKFIQKGGSFINYYMYHGGTNFG------RTAGGP---F--- 313 (872)
Q Consensus 252 ~----P~~~~E~~~Gwf-~~WG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~G~~---~--- 313 (872)
+ +....|.+-+|| +.|..++.... .+.-+..+.+.|..+.+ -||||||+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 556677788888 77776654444 34445666777777766 6999999999999 776653 2
Q ss_pred ----ccccCCCCCCCCcCCCCC
Q 002867 314 ----IATSYDYDAPLDEYGLLR 331 (872)
Q Consensus 314 ----~~TSYDYdApl~E~G~~~ 331 (872)
..|+|++++.+.+.|.++
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~~ 333 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGALR 333 (673)
T ss_pred cCCcchhhhhhccCCCCCcccc
Confidence 479999999999999853
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.82 E-value=4.9e-20 Score=207.65 Aligned_cols=263 Identities=21% Similarity=0.280 Sum_probs=159.7
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEE-cccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCC
Q 002867 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFG 132 (872)
Q Consensus 54 ~Hy~R~~~~~W~~~l~k~ka~GlN~V~t-yv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~G 132 (872)
+++..++++.|+++|++||++|+|+|++ .+.|+.+||+||+|||+ .||++|++|+++||+|||+.. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4667789999999999999999999996 67899999999999999 899999999999999999875 67
Q ss_pred CCCccccc-CCCeee----------------ecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCccc
Q 002867 133 GFPVWLKY-IPGINF----------------RTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEY 195 (872)
Q Consensus 133 GlP~WL~~-~p~~~~----------------Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg~~~~ 195 (872)
..|.||.+ +|++.. ..++|.|++++++++++|+++++++ ..||+|||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~-------p~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDH-------PAVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTT-------TTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcccc-------ceEEEEEeccccCcCcC
Confidence 79999975 576532 1346889999999999999988854 47999999999987532
Q ss_pred ccCCCCHHHHHHHHHHHHhc-------CC-------------CcceEeeCCC----------------------------
Q 002867 196 EIGAPGRSYTRWAAKMAVGL-------GT-------------GVPWIMCKQD---------------------------- 227 (872)
Q Consensus 196 ~~~~~~~~y~~~l~~~~~~~-------gi-------------~vp~~~~~~~---------------------------- 227 (872)
....+.++|.+||++++... |. ..|..+....
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22236678999999987531 11 1122221000
Q ss_pred -CCCCccccCCC-------Cc-------ccc-----c-------C---------------CCCCCCCCceeeeccccccc
Q 002867 228 -DAPDPLINTCN-------GF-------YCD-----Y-------F---------------SPNKAYKPKMWTEAWTGWYT 265 (872)
Q Consensus 228 -~~~~~~~~~~n-------g~-------~~~-----~-------~---------------~~~~p~~P~~~~E~~~Gwf~ 265 (872)
..|+ ..-+.| +. .+| . . +.....+|.+++|..+| -.
T Consensus 224 ~~~p~-~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 224 EYDPD-HPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HhCCC-ceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 0010 000101 00 000 0 0 01146789999999999 55
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeecCCCCCCCCCCCcccccCCCCCCCCcCC-CCCchhHHHHHHHHHH
Q 002867 266 EFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYG-LLRQPKWGHLKDLHRA 344 (872)
Q Consensus 266 ~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdApl~E~G-~~~t~Ky~~lr~l~~~ 344 (872)
.|+.......+..+....-.-++.|+..+.|+=+ ...-+|.=.. ..+.|+-+| .+ +++|.+++++...
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~-~~~~~e~~~~~~~ 370 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREP-TRRYREVAQLGRE 370 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B--HHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCC-CcHHHHHHHHHHH
Confidence 6765544445566665555668999998877655 3223332110 136788899 65 7999999999877
Q ss_pred HHh
Q 002867 345 IKL 347 (872)
Q Consensus 345 i~~ 347 (872)
|+.
T Consensus 371 l~~ 373 (374)
T PF02449_consen 371 LKK 373 (374)
T ss_dssp HHT
T ss_pred Hhc
Confidence 663
No 6
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.79 E-value=4.5e-20 Score=163.81 Aligned_cols=76 Identities=36% Similarity=0.726 Sum_probs=60.9
Q ss_pred EecCCCCeEEEEeeecCCCCC-CCCCCc---cCCceecCChHHHHHhhcCCCCCceEEecCCCCCCCCCCCCceeEEEEE
Q 002867 794 LMCGPGQKIKSIKFASFGTPE-GVCGSY---RQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEA 869 (872)
Q Consensus 794 L~C~~G~~I~~I~~A~YGr~~-~~C~~~---~~~~C~~~~sl~~V~~~C~Gk~~C~v~a~~~~Fg~DPC~gt~KyL~v~y 869 (872)
|+||+|++| .|.+|+|||+. .+|+.. ..++|+++.++++|+++|+||++|+|.|++.+|| ||||||+|||+|+|
T Consensus 1 L~C~~g~~I-~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~-dpC~~~~KyL~V~Y 78 (80)
T PF02140_consen 1 LSCPPGKVI-SIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFG-DPCPGTSKYLEVTY 78 (80)
T ss_dssp EE-STTEEE-EEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH---SSTTS--EEEEEE
T ss_pred CCCcCCCEE-EEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccC-CCCCCCCeEEEEEE
Confidence 899999666 69999999965 599743 3568999999999999999999999999999997 99999999999999
Q ss_pred Ee
Q 002867 870 IC 871 (872)
Q Consensus 870 ~C 871 (872)
+|
T Consensus 79 ~C 80 (80)
T PF02140_consen 79 TC 80 (80)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 7
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.77 E-value=3.6e-19 Score=185.31 Aligned_cols=86 Identities=28% Similarity=0.547 Sum_probs=79.0
Q ss_pred CCCCCceEEecCCCCeEEEEeeecCCCC-CCCCCC----ccCCceecCChHHHHHhhcCCCCCceEEecCCCCCCCCCCC
Q 002867 786 KPLRPKAHLMCGPGQKIKSIKFASFGTP-EGVCGS----YRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPS 860 (872)
Q Consensus 786 ~~~~~~~~L~C~~G~~I~~I~~A~YGr~-~~~C~~----~~~~~C~~~~sl~~V~~~C~Gk~~C~v~a~~~~Fg~DPC~g 860 (872)
..+|..++|+||.|.+|+ |+.|+|||. ...|.. ..+.+|..|.|+++++++|++|++|.|.|..++||.|||||
T Consensus 40 aCdG~~i~L~CP~~dvIs-v~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~DPCPg 118 (265)
T KOG4729|consen 40 ACDGERITLSCPRGDVIS-VQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGDDPCPG 118 (265)
T ss_pred eecCceEEEEcCCCCEEE-EEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCCCCCCC
Confidence 599999999999999995 999999994 469953 23689999999999999999999999999999999999999
Q ss_pred CceeEEEEEEeC
Q 002867 861 IMKQLAVEAICG 872 (872)
Q Consensus 861 t~KyL~v~y~C~ 872 (872)
|+|||+|+|.|.
T Consensus 119 T~KYLev~Y~Cv 130 (265)
T KOG4729|consen 119 TSKYLEVQYGCV 130 (265)
T ss_pred chhheEEEeccC
Confidence 999999999994
No 8
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.18 E-value=5.8e-10 Score=122.22 Aligned_cols=192 Identities=20% Similarity=0.299 Sum_probs=124.3
Q ss_pred EEEccCcEEECCeEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHH
Q 002867 33 VSYDSKAIAINGKRRILISGSIHYPR------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKF 106 (872)
Q Consensus 33 v~~d~~~~~idG~p~~~~sG~~Hy~R------~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~f 106 (872)
|.+.++.|+|||||+++-+...|... ++++.|+++|++||++|+|+|++ .|-|. -.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 67889999999999999999999633 47899999999999999999999 45553 2789
Q ss_pred HHHHHHcCCEEEEecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecc
Q 002867 107 IKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQI 186 (872)
Q Consensus 107 l~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQi 186 (872)
+++|.++||.|+.-+. ..+.-.|-... .......||.+.+.+.+-+++++.+.++|| .||+|=+
T Consensus 65 ~~~cD~~GilV~~e~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-------SIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIP--------LEGHGSWQDFG-NCNYDADDPEFRENAEQELREMVRRDRNHP-------SIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S---------BSCTSSSSTS-CTSCTTTSGGHHHHHHHHHHHHHHHHTT-T-------TEEEEEE
T ss_pred HHHHhhcCCEEEEecc--------ccccCccccCC-ccccCCCCHHHHHHHHHHHHHHHHcCcCcC-------chheeec
Confidence 9999999999987542 11121222111 012456789999998888899988888665 7999999
Q ss_pred cccccCcccccCCCCHHHHHHHHHHHHhcCCCcceEeeCCC--CCCCccc-cCCCCccc-----ccCC----C--CCCCC
Q 002867 187 ENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQD--DAPDPLI-NTCNGFYC-----DYFS----P--NKAYK 252 (872)
Q Consensus 187 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~vp~~~~~~~--~~~~~~~-~~~ng~~~-----~~~~----~--~~p~~ 252 (872)
-||-. ...+++.|.+++++..-+-|....... ...+... +...+.+. +.+. . ..+++
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99982 356788899999987777775543331 0111111 11111110 0111 1 35789
Q ss_pred Cceeeeccccccc
Q 002867 253 PKMWTEAWTGWYT 265 (872)
Q Consensus 253 P~~~~E~~~Gwf~ 265 (872)
|++.+||....+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999999765554
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.03 E-value=3.8e-08 Score=118.16 Aligned_cols=159 Identities=18% Similarity=0.118 Sum_probs=112.1
Q ss_pred eeEEEccCcEEECCeEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHH
Q 002867 31 GSVSYDSKAIAINGKRRILISGSIHYPR------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLV 104 (872)
Q Consensus 31 ~~v~~d~~~~~idG~p~~~~sG~~Hy~R------~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~ 104 (872)
++|++++..|+|||+|+++-+...|... ++++.|+.+|+.||++|+|+|++ .|-|. =.
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~-----------~~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY-----------SE 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC-----------CH
Confidence 3478889999999999999999888532 57788999999999999999999 34442 26
Q ss_pred HHHHHHHHcCCEEEEecCcccceecCCCCCCcccc-------c-CCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccc
Q 002867 105 KFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK-------Y-IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFES 176 (872)
Q Consensus 105 ~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~-------~-~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~ 176 (872)
+|+++|.++||+|+-... .-|+..|.. + .+....-..+|.+.++..+-+++++.+.++|
T Consensus 340 ~~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NH----- 406 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDKNH----- 406 (604)
T ss_pred HHHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhccCC-----
Confidence 899999999999987642 112222221 1 1111112345677777666677777666655
Q ss_pred cCCceEeecccccccCcccccCCCCHHHHHHHHHHHHhcCCCcceEee
Q 002867 177 QGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMC 224 (872)
Q Consensus 177 ~gGpII~vQiENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~vp~~~~ 224 (872)
..||||-|-||..... .....+++.|.+.+++..-+-|....
T Consensus 407 --PSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 407 --PSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred --ceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 4899999999975421 13457788888888887766665543
No 10
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.90 E-value=2.4e-09 Score=101.31 Aligned_cols=68 Identities=37% Similarity=0.727 Sum_probs=50.6
Q ss_pred CCCceEEEEEEECCCCCC-ceE-EEe--CCCceEEEEECCeeccccccccccCCCCCcccccCccccccccCCCCCCcee
Q 002867 648 RQPLTWYRTTFSAPAGNA-PLA-LDM--GSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQR 723 (872)
Q Consensus 648 ~~~~~fY~~tF~lp~~~d-p~~-Ld~--~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~~G~~~~~~~~~~~g~PQqt 723 (872)
..+..|||++|.... .| .+. |+. +.+.+++|||||++|||||+. +| ||++
T Consensus 33 ~~g~~~Yrg~F~~~~-~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~------------~g-------------~q~t 86 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTG-QDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG------------IG-------------PQTT 86 (111)
T ss_dssp SSCEEEEEEEEETTT-EEEEEE-EEECSSTTEEEEEEETTEEEEEEETT------------TE-------------CCEE
T ss_pred CCCCEEEEEEEeCCC-cceeEEEEeccCCCceEEEEEECCEEeeeecCC------------CC-------------ccEE
Confidence 457899999996421 22 223 333 457899999999999999965 35 9999
Q ss_pred eeecCccccccCCceEEEE
Q 002867 724 WYHVPRSWLKPTGNLLVVF 742 (872)
Q Consensus 724 lY~VP~~~Lk~g~N~Ivvf 742 (872)
++ ||+++|+.++|.|+|+
T Consensus 87 f~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 87 FS-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp EE-E-BTTBTTCEEEEEEE
T ss_pred EE-eCceeecCCCEEEEEE
Confidence 88 9999999886666555
No 11
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.84 E-value=4.2e-08 Score=105.02 Aligned_cols=159 Identities=21% Similarity=0.245 Sum_probs=108.0
Q ss_pred CCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCc-cCCCCce-eeeccchhHHHHHHHHHHcCCEEEEe
Q 002867 43 NGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNG-HEPSPGK-YYFEGNYDLVKFIKLAKQAGLYVNLR 120 (872)
Q Consensus 43 dG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~-hEp~~G~-ydf~g~~dl~~fl~la~~~GL~Vilr 120 (872)
+|+++.+.+-+.|+.. +..-++.++.||++|+|+||+.|.|.. .++.|+. ++=+....|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 7999999999999322 227889999999999999999999954 4477764 77777789999999999999999986
Q ss_pred cCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccc--cC
Q 002867 121 IGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYE--IG 198 (872)
Q Consensus 121 pGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg~~~~~--~~ 198 (872)
+= ..|.|....... ...+...+....+.+.|+.+++ +..+|++++|=||....... ..
T Consensus 82 ~h----------~~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----------NAPGWANGGDGY---GNNDTAQAWFKSFWRALAKRYK-------DNPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----------ESTTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHT-------TTTTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----------cCcccccccccc---ccchhhHHHHHhhhhhhccccC-------CCCcEEEEEecCCccccCCccccc
Confidence 42 127774332110 1222333444455666666665 33479999999999874211 00
Q ss_pred ----CCCHHHHHHHHHHHHhcCCCcceEe
Q 002867 199 ----APGRSYTRWAAKMAVGLGTGVPWIM 223 (872)
Q Consensus 199 ----~~~~~y~~~l~~~~~~~gi~vp~~~ 223 (872)
..-.++.+.+.+.+|+.+-+.+++.
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~ 170 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIV 170 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeec
Confidence 0113455666666777777766554
No 12
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.74 E-value=1.9e-07 Score=117.80 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=103.5
Q ss_pred EEEccCcEEECCeEeEEEEEEeeCC------CCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHH
Q 002867 33 VSYDSKAIAINGKRRILISGSIHYP------RSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKF 106 (872)
Q Consensus 33 v~~d~~~~~idG~p~~~~sG~~Hy~------R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~f 106 (872)
|+++++.|+|||+|+++-+...|-. .++++.++++|+.||++|+|+|++ .|-|. =.+|
T Consensus 336 iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~-----------~p~f 399 (1027)
T PRK09525 336 VEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN-----------HPLW 399 (1027)
T ss_pred EEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CHHH
Confidence 6778889999999999999999832 368899999999999999999999 24442 2689
Q ss_pred HHHHHHcCCEEEEecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecc
Q 002867 107 IKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQI 186 (872)
Q Consensus 107 l~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQi 186 (872)
+++|.++||+|+-... . | ..|-.|. .. -.+||.|.+++..=+++++.+.++| ..||+|=+
T Consensus 400 ydlcDe~GilV~dE~~-~---e-~hg~~~~---~~-----~~~dp~~~~~~~~~~~~mV~RdrNH-------PSIi~WSl 459 (1027)
T PRK09525 400 YELCDRYGLYVVDEAN-I---E-THGMVPM---NR-----LSDDPRWLPAMSERVTRMVQRDRNH-------PSIIIWSL 459 (1027)
T ss_pred HHHHHHcCCEEEEecC-c---c-ccCCccc---cC-----CCCCHHHHHHHHHHHHHHHHhCCCC-------CEEEEEeC
Confidence 9999999999997642 1 1 1111111 00 1457888776655556666665544 58999999
Q ss_pred cccccCcccccCCCCHHHHHHHHHHHHhcCCCcceEee
Q 002867 187 ENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMC 224 (872)
Q Consensus 187 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~vp~~~~ 224 (872)
-||-+. + ...+.+.+.+++..-+-|....
T Consensus 460 gNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 460 GNESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred ccCCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 999753 1 1245566667766656665443
No 13
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.72 E-value=2e-07 Score=117.85 Aligned_cols=185 Identities=19% Similarity=0.145 Sum_probs=117.7
Q ss_pred EEEccCcEEECCeEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHH
Q 002867 33 VSYDSKAIAINGKRRILISGSIHYPR------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKF 106 (872)
Q Consensus 33 v~~d~~~~~idG~p~~~~sG~~Hy~R------~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~f 106 (872)
|.++++.|+|||+|+++-+...|-.. ++++.|+++|+.||++|+|+|++. |-|. =.+|
T Consensus 320 iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~s-----HyP~-----------~~~f 383 (1021)
T PRK10340 320 IKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTA-----HYPN-----------DPRF 383 (1021)
T ss_pred EEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEec-----CCCC-----------CHHH
Confidence 67788899999999999999988422 478899999999999999999992 4443 2589
Q ss_pred HHHHHHcCCEEEEecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecc
Q 002867 107 IKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQI 186 (872)
Q Consensus 107 l~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQi 186 (872)
+++|.++||+|+-.. |..|. |++ ... +...-+++|.|.++..+-+++++.+.++| ..||+|=+
T Consensus 384 ydlcDe~GllV~dE~-~~e~~-----g~~--~~~--~~~~~~~~p~~~~~~~~~~~~mV~RdrNH-------PSIi~Wsl 446 (1021)
T PRK10340 384 YELCDIYGLFVMAET-DVESH-----GFA--NVG--DISRITDDPQWEKVYVDRIVRHIHAQKNH-------PSIIIWSL 446 (1021)
T ss_pred HHHHHHCCCEEEECC-ccccc-----Ccc--ccc--ccccccCCHHHHHHHHHHHHHHHHhCCCC-------CEEEEEEC
Confidence 999999999999764 22221 111 000 01112467777665544455566655544 58999999
Q ss_pred cccccCcccccCCCCHHHHHHHHHHHHhcCCCcceEeeCCCCCC--CccccCCCCcc--cccCCCCCCCCCceeeecc
Q 002867 187 ENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQDDAP--DPLINTCNGFY--CDYFSPNKAYKPKMWTEAW 260 (872)
Q Consensus 187 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~vp~~~~~~~~~~--~~~~~~~ng~~--~~~~~~~~p~~P~~~~E~~ 260 (872)
-||-+. + . .++.+.+.+++..-+-|+ +..+.... .+++...-+.. ...+....+++|++.+||-
T Consensus 447 GNE~~~-----g---~-~~~~~~~~~k~~DptR~v-~~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 447 GNESGY-----G---C-NIRAMYHAAKALDDTRLV-HYEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred ccCccc-----c---H-HHHHHHHHHHHhCCCceE-EeCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 999753 2 1 246677777776665554 33331111 11211110000 1122233457999999984
No 14
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.64 E-value=1.1e-07 Score=90.01 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=59.2
Q ss_pred hhhhCCCCCCcceEEEEEEecCCCCCccccCCCcce-EEec-CcceEEEEEECCEEEEEEEcccCCCeeEEEeeee-ccC
Q 002867 463 LEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPV-LTVM-SAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVN-MRA 539 (872)
Q Consensus 463 ~Eql~~t~d~~GyllYrt~i~~~~~~~~~~~~~~~~-L~v~-~~~d~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~-l~~ 539 (872)
.+..+..+++.|++||||+|+..+.+. ... |.+. +.+++++|||||+++|+..... ....+|++|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-g~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-GPQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTT-ECCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCC-CccEEEEeCceeecC
Confidence 456667778999999999997543331 123 4444 6899999999999999988332 12355665543 555
Q ss_pred CccEEEEEEeccCC
Q 002867 540 GINKIALLSIAVGL 553 (872)
Q Consensus 540 g~~~L~ILven~Gr 553 (872)
+.++|.+|+++||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67889999999996
No 15
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.60 E-value=6.8e-07 Score=109.46 Aligned_cols=135 Identities=20% Similarity=0.301 Sum_probs=103.2
Q ss_pred eeEEEccCcEEECCeEeEEEEEEeeCCC-----C-CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHH
Q 002867 31 GSVSYDSKAIAINGKRRILISGSIHYPR-----S-SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLV 104 (872)
Q Consensus 31 ~~v~~d~~~~~idG~p~~~~sG~~Hy~R-----~-~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~ 104 (872)
++|.++...|.|||||+++-+..-|.+- . ..+.-+++|++||++|+|+|+| | |-|. =.
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt---s--HyP~-----------~~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT---S--HYPN-----------SE 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe---c--CCCC-----------CH
Confidence 3488899999999999999999999643 3 3444889999999999999999 3 6554 47
Q ss_pred HHHHHHHHcCCEEEEecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEee
Q 002867 105 KFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILS 184 (872)
Q Consensus 105 ~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~v 184 (872)
+|++||.++||+||--+ ..||-. +| +|+.|++.+..=+++++++.++|| .||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knHP-------SIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNHP-------SIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCCC-------cEEEE
Confidence 89999999999999874 112211 12 788899988888888888888665 79999
Q ss_pred cccccccCcccccCCCCHHHHHHHHHHH
Q 002867 185 QIENEYGPMEYEIGAPGRSYTRWAAKMA 212 (872)
Q Consensus 185 QiENEyg~~~~~~~~~~~~y~~~l~~~~ 212 (872)
=+.||-|. ++....-..|.++.-
T Consensus 402 s~gNE~~~-----g~~~~~~~~~~k~~d 424 (808)
T COG3250 402 SLGNESGH-----GSNHWALYRWFKASD 424 (808)
T ss_pred eccccccC-----ccccHHHHHHHhhcC
Confidence 99999775 223344445555543
No 16
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.99 E-value=4e-05 Score=76.63 Aligned_cols=100 Identities=25% Similarity=0.330 Sum_probs=70.5
Q ss_pred CCCCcceEEEEEEecCCCCCccccCCCcceEEecCcceEEEEEECCEEEEEEEcccCCCeeEEEeeeeccCCc-cEEEEE
Q 002867 469 TRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGI-NKIALL 547 (872)
Q Consensus 469 t~d~~GyllYrt~i~~~~~~~~~~~~~~~~L~v~~~~d~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~IL 547 (872)
.....|+.|||++|..+... .+....|.+.++.+.+.|||||++||...+.. ..+.+.++-.|+.|. |+|.|.
T Consensus 63 ~~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 63 LWDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVR 136 (167)
T ss_dssp TSTCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEE
T ss_pred ccccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEE
Confidence 34478999999999876432 23456789999999999999999999987542 345566655578887 999999
Q ss_pred EeccCCccccCCC-CccccceeccEEEc
Q 002867 548 SIAVGLPNVGPHF-ETWNAGVLGPVTLN 574 (872)
Q Consensus 548 ven~Gr~NyG~~~-~~~~kGI~g~V~L~ 574 (872)
|.+...-.+-+.+ .....||.++|.|.
T Consensus 137 v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 137 VDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred EeecCCCceeecCcCCccCccccEEEEE
Confidence 9865543321111 13569999999883
No 17
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.89 E-value=3.4e-05 Score=83.11 Aligned_cols=116 Identities=23% Similarity=0.347 Sum_probs=86.5
Q ss_pred CCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHH
Q 002867 85 WNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKI 164 (872)
Q Consensus 85 Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l 164 (872)
|...||++|+|||+ .++++++.|+++||.| |..+.+ |.. ..|.|+...+ .+..++++.+|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 88999999999999 8999999999999998 332222 433 6899987532 345678888888888
Q ss_pred HHHHHhcccccccCCceEeecccccccCccc------cc-CCCCHHHHHHHHHHHHhcCCCcceEeeC
Q 002867 165 VDMMKAERLFESQGGPIILSQIENEYGPMEY------EI-GAPGRSYTRWAAKMAVGLGTGVPWIMCK 225 (872)
Q Consensus 165 ~~~i~~~~~~~~~gGpII~vQiENEyg~~~~------~~-~~~~~~y~~~l~~~~~~~gi~vp~~~~~ 225 (872)
+.+++ |.|..|+|=||.-.... .+ ...+.+|+...-+.+|+..-++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88776 46889999999543210 11 1134578888888898888888888765
No 18
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.84 E-value=0.00015 Score=79.73 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=84.2
Q ss_pred ceeEEEccCcEE--ECCeEeEEEEEEeeCCC-----------CCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceee
Q 002867 30 EGSVSYDSKAIA--INGKRRILISGSIHYPR-----------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYY 96 (872)
Q Consensus 30 ~~~v~~d~~~~~--idG~p~~~~sG~~Hy~R-----------~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~yd 96 (872)
-..|++.++.|. .+|++|+|.+-.+.+.- ..++.|++++..||++|+|||++|-.
T Consensus 8 ~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~v------------ 75 (314)
T PF03198_consen 8 VPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSV------------ 75 (314)
T ss_dssp S--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES--------------
T ss_pred CCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEe------------
Confidence 355788898888 79999999887776522 25678999999999999999999732
Q ss_pred eccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccccCCCeeeecCCh--hhHHHHHHHHHHHHHHHHhcccc
Q 002867 97 FEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENG--PFKAEMHKFTKKIVDMMKAERLF 174 (872)
Q Consensus 97 f~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp--~y~~~~~~~~~~l~~~i~~~~~~ 174 (872)
+-..|-++++++.+++||||||..+ .|...+-..+| .|-...-.-+.++++.++.+
T Consensus 76 -dp~~nHd~CM~~~~~aGIYvi~Dl~------------------~p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y--- 133 (314)
T PF03198_consen 76 -DPSKNHDECMSAFADAGIYVILDLN------------------TPNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY--- 133 (314)
T ss_dssp --TTS--HHHHHHHHHTT-EEEEES-------------------BTTBS--TTS------HHHHHHHHHHHHHHTT----
T ss_pred -CCCCCHHHHHHHHHhCCCEEEEecC------------------CCCccccCCCCcCCCCHHHHHHHHHHHHHhccC---
Confidence 2224789999999999999999854 12223333445 44333222334456666744
Q ss_pred cccCCceEeecccccccCcccc--cCCCCHHHHHHHHHHHHhcCC-Ccce
Q 002867 175 ESQGGPIILSQIENEYGPMEYE--IGAPGRSYTRWAAKMAVGLGT-GVPW 221 (872)
Q Consensus 175 ~~~gGpII~vQiENEyg~~~~~--~~~~~~~y~~~l~~~~~~~gi-~vp~ 221 (872)
.+++++=+-||--.-... -.+.-++..+-+|+-+++.+. .+|+
T Consensus 134 ----~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 ----DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp ----TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred ----CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 389999999997542110 001234444555665666555 3453
No 19
>PLN02705 beta-amylase
Probab=97.77 E-value=5.9e-05 Score=87.95 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=63.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeccchhHHHHHHHHHHcCCEE--EEecCcccceecCCC----
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYV--NLRIGPYVCAEWNFG---- 132 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp-~~G~ydf~g~~dl~~fl~la~~~GL~V--ilrpGPyicaEw~~G---- 132 (872)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ --|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 4456788999999999999999999999998 599999996 778899999999996 4553 22433 112
Q ss_pred -CCCccccc----CCCeee
Q 002867 133 -GFPVWLKY----IPGINF 146 (872)
Q Consensus 133 -GlP~WL~~----~p~~~~ 146 (872)
-||.|+.+ +|+|..
T Consensus 340 IPLP~WV~e~g~~nPDiff 358 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIFF 358 (681)
T ss_pred ccCCHHHHHhcccCCCcee
Confidence 38999975 467643
No 20
>TIGR03356 BGL beta-galactosidase.
Probab=97.71 E-value=3.7e-05 Score=88.94 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=80.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCccccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~ 140 (872)
..|+++|+.||++|+|++++-|.|.-.+|. +|++|.+|....+++|+.|.++||.+|+--= .=.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 468899999999999999999999999999 7999999999999999999999999886531 2358999986
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 002867 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (872)
Q Consensus 141 ~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~ 170 (872)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5442 3466667777777777777773
No 21
>PLN02905 beta-amylase
Probab=97.69 E-value=0.00011 Score=86.10 Aligned_cols=80 Identities=21% Similarity=0.481 Sum_probs=62.5
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeccchhHHHHHHHHHHcCCEE--EEecCcccceecCCC-----
Q 002867 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYV--NLRIGPYVCAEWNFG----- 132 (872)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp-~~G~ydf~g~~dl~~fl~la~~~GL~V--ilrpGPyicaEw~~G----- 132 (872)
++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ --|+- +-|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~I 358 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCI 358 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 344677899999999999999999999998 699999996 778899999999996 4543 22333 112
Q ss_pred CCCccccc----CCCeee
Q 002867 133 GFPVWLKY----IPGINF 146 (872)
Q Consensus 133 GlP~WL~~----~p~~~~ 146 (872)
-||.|+.+ +|+|..
T Consensus 359 PLP~WV~e~g~~nPDiff 376 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFF 376 (702)
T ss_pred cCCHHHHHhhhcCCCceE
Confidence 38999875 567643
No 22
>PLN02801 beta-amylase
Probab=97.68 E-value=0.00011 Score=84.69 Aligned_cols=80 Identities=24% Similarity=0.494 Sum_probs=63.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeccchhHHHHHHHHHHcCCEE--EEecCcccceecCCC----
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYV--NLRIGPYVCAEWNFG---- 132 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp-~~G~ydf~g~~dl~~fl~la~~~GL~V--ilrpGPyicaEw~~G---- 132 (872)
.++.-+..|+++|++|+..|.+.|.|.+.|. .|++|||+| ..+++++++++||++ |+.+ --|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4566789999999999999999999999998 599999996 778899999999996 4543 22332 111
Q ss_pred -CCCccccc----CCCee
Q 002867 133 -GFPVWLKY----IPGIN 145 (872)
Q Consensus 133 -GlP~WL~~----~p~~~ 145 (872)
-||.|+.+ +|+|.
T Consensus 109 IpLP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIF 126 (517)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 38999974 56664
No 23
>PLN00197 beta-amylase; Provisional
Probab=97.65 E-value=0.00013 Score=84.67 Aligned_cols=81 Identities=28% Similarity=0.553 Sum_probs=63.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeccchhHHHHHHHHHHcCCEE--EEecCcccceecCCC----
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYV--NLRIGPYVCAEWNFG---- 132 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp-~~G~ydf~g~~dl~~fl~la~~~GL~V--ilrpGPyicaEw~~G---- 132 (872)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||++ |+.+ --|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4556788999999999999999999999998 699999996 778899999999996 4543 22333 112
Q ss_pred -CCCccccc----CCCeee
Q 002867 133 -GFPVWLKY----IPGINF 146 (872)
Q Consensus 133 -GlP~WL~~----~p~~~~ 146 (872)
-||.|+.+ +|+|..
T Consensus 199 IpLP~WV~~~g~~dpDiff 217 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAY 217 (573)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 38999875 567643
No 24
>PLN02803 beta-amylase
Probab=97.56 E-value=0.00021 Score=82.84 Aligned_cols=80 Identities=21% Similarity=0.532 Sum_probs=62.5
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeccchhHHHHHHHHHHcCCEE--EEecCcccceecCCC-----
Q 002867 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYV--NLRIGPYVCAEWNFG----- 132 (872)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~GL~V--ilrpGPyicaEw~~G----- 132 (872)
++.-+..|+++|++|+..|.+-|.|.+.|.+ |++|||+| ..+++++++++||++ |+.+ --|+- +-|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~I 179 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCSI 179 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 4456779999999999999999999999984 99999996 778899999999996 4543 22332 111
Q ss_pred CCCccccc----CCCeee
Q 002867 133 GFPVWLKY----IPGINF 146 (872)
Q Consensus 133 GlP~WL~~----~p~~~~ 146 (872)
-||.|+.+ +|+|..
T Consensus 180 pLP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 180 PLPPWVLEEMSKNPDLVY 197 (548)
T ss_pred cCCHHHHHhhhcCCCceE
Confidence 38999875 577643
No 25
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.55 E-value=0.00027 Score=77.86 Aligned_cols=224 Identities=22% Similarity=0.316 Sum_probs=111.2
Q ss_pred cCcEE-ECCeEeEEEEEEeeC---CCCCcccHHHHHHHHHHCCCCEEEEccc--CCcc--------CC----CCceeeec
Q 002867 37 SKAIA-INGKRRILISGSIHY---PRSSPEMWPDLIQKAKDGGLDVIQTYVF--WNGH--------EP----SPGKYYFE 98 (872)
Q Consensus 37 ~~~~~-idG~p~~~~sG~~Hy---~R~~~~~W~~~l~k~ka~GlN~V~tyv~--Wn~h--------Ep----~~G~ydf~ 98 (872)
++.|. -||+||+.++ .-.+ .|...++|+.-|+..|+-|||+|++=|+ |..+ .| .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 46677 7999999998 4444 3568899999999999999999998765 3322 12 12337777
Q ss_pred cc-----hhHHHHHHHHHHcCCEEEEe---cCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 002867 99 GN-----YDLVKFIKLAKQAGLYVNLR---IGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (872)
Q Consensus 99 g~-----~dl~~fl~la~~~GL~Vilr---pGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~ 170 (872)
.- ..|++.|++|.++||.+-|- -+||.-+-|-+| | ..| =.+.+++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 53 58999999999999997543 234443444333 1 111 136788999999999995
Q ss_pred cccccccCCceEeecccccccCcccccCCCCHHHHHHHHHHHHhcCCCcceEee--CCC-CCC-----Ccccc--CC-CC
Q 002867 171 ERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMC--KQD-DAP-----DPLIN--TC-NG 239 (872)
Q Consensus 171 ~~~~~~~gGpII~vQiENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~vp~~~~--~~~-~~~-----~~~~~--~~-ng 239 (872)
.+ +|| |=|-||+ . ......++.+.+.+.+++..-.- +++. .+. ..+ .+-+. .. +|
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~-L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsg 210 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQ-LITIHPCGRTSSPDWFHDEPWLDFNMYQSG 210 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS--EEEEE-BTEBTHHHHTT-TT--SEEEB--
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCcchhhcCCCcceEEEeecC
Confidence 53 455 5588998 1 12466788888888887743322 3322 111 011 00011 11 11
Q ss_pred ccc---c-------cCC-CCCCCCCceeeec-ccccccccCCCCCCCChHHHHHHHHHHHHcCC
Q 002867 240 FYC---D-------YFS-PNKAYKPKMWTEA-WTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGG 291 (872)
Q Consensus 240 ~~~---~-------~~~-~~~p~~P~~~~E~-~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~ 291 (872)
-.. + .+. ...|.+|.+..|- |.|.-..+.......+++++...+=+-+-+|+
T Consensus 211 h~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 211 HNRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp S--TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CCcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 100 0 011 4568899999995 44443332222334577887665544455665
No 26
>PLN02161 beta-amylase
Probab=97.52 E-value=0.00029 Score=81.20 Aligned_cols=82 Identities=21% Similarity=0.350 Sum_probs=62.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeccchhHHHHHHHHHHcCCEEE--EecCcccceec--CCC--
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYVN--LRIGPYVCAEW--NFG-- 132 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp-~~G~ydf~g~~dl~~fl~la~~~GL~Vi--lrpGPyicaEw--~~G-- 132 (872)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||++. +.+ --|+-= +..
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGGNvGd~~~I 189 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCF--HSNMHLFGGKGGI 189 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCCCCCCccCc
Confidence 3444677899999999999999999999998 799999996 7788999999999964 543 222220 111
Q ss_pred CCCccccc----CCCeee
Q 002867 133 GFPVWLKY----IPGINF 146 (872)
Q Consensus 133 GlP~WL~~----~p~~~~ 146 (872)
-||.|+.+ +|+|..
T Consensus 190 pLP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYY 207 (531)
T ss_pred cCCHHHHhhhccCCCceE
Confidence 27999974 577644
No 27
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.18 E-value=0.00049 Score=78.08 Aligned_cols=112 Identities=18% Similarity=0.336 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEE--EecCcccce----ecCCCCCC
Q 002867 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVN--LRIGPYVCA----EWNFGGFP 135 (872)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~GL~Vi--lrpGPyica----Ew~~GGlP 135 (872)
.-+..|+++|++|+..|.+.|.|.+.|.+ |++|||+| .+++.+++++.||++. +.+ --|+ ..-+=-||
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsf--H~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSF--HQCGGNVGDDCNIPLP 91 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE---S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEee--ecCCCCCCCccCCcCC
Confidence 45778999999999999999999999997 99999995 7888999999999965 432 1221 11111379
Q ss_pred ccccc---CCCeeeec--------------CChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecc
Q 002867 136 VWLKY---IPGINFRT--------------ENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQI 186 (872)
Q Consensus 136 ~WL~~---~p~~~~Rt--------------~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQi 186 (872)
.|+.+ ..+|.... .... ++.-+.|++....+++ .+. +.|..|||
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 99974 22553211 1122 5556667777777776 432 67888876
No 28
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.0055 Score=67.47 Aligned_cols=133 Identities=18% Similarity=0.295 Sum_probs=98.8
Q ss_pred HHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccccCCCeeeecCC
Q 002867 71 AKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTEN 150 (872)
Q Consensus 71 ~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~d 150 (872)
.|+.+.=|-+.-.=|+..||++|.|+|+ --|+..+.|+++||.+- -=+.| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lh--GHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLH--GHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeec--cceee---ecc-cCCchhhccc-----cCh
Confidence 4455544445556699999999999999 68999999999999652 21222 433 6899998643 245
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccC----cc---cccCCCCHHHHHHHHHHHHhcCCCcceEe
Q 002867 151 GPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGP----ME---YEIGAPGRSYTRWAAKMAVGLGTGVPWIM 223 (872)
Q Consensus 151 p~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg~----~~---~~~~~~~~~y~~~l~~~~~~~gi~vp~~~ 223 (872)
++.++.+++++..++.+++ |-|+.|-|=||-=+ +. +..+..+.+|+++.-+.+|+.+-+--|+.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 6789999999999999998 35899999999633 11 11223678999999999999877777777
Q ss_pred eCC
Q 002867 224 CKQ 226 (872)
Q Consensus 224 ~~~ 226 (872)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 664
No 29
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.70 E-value=0.004 Score=69.82 Aligned_cols=103 Identities=30% Similarity=0.465 Sum_probs=66.3
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCC-ceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccccCCC
Q 002867 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSP-GKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPG 143 (872)
Q Consensus 65 ~~~l~k~ka~GlN~V~tyv~Wn~hEp~~-G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~ 143 (872)
+|.|+-||+.|+|.||.=| |+ .|.. |..|.+ +..+..+.|+++||+|+|-+- |- -.|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCC
Confidence 5889999999999999987 44 4555 666666 677777777899999999753 21 1232 222
Q ss_pred eee-----ec-CChhhHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccc
Q 002867 144 INF-----RT-ENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYG 191 (872)
Q Consensus 144 ~~~-----Rt-~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg 191 (872)
-.. +. +-..-.++|..|.+.++..|++. |=.+=||||-||..
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~------G~~pd~VQVGNEin 136 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAA------GVTPDMVQVGNEIN 136 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHT------T--ESEEEESSSGG
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCccEEEeCcccc
Confidence 111 11 23456788999999999999944 55778999999964
No 30
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.67 E-value=0.0017 Score=75.91 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~--~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~ 139 (872)
..|+++|+.||++|+|+.++-|.|.-.+|. +|.+|-+|...-+++|+.+.++||..++-- -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 458999999999999999999999999999 699999999999999999999999976542 2456899998
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 002867 140 YIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (872)
Q Consensus 140 ~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~ 170 (872)
+.-+- .++...+.-.+|.+.+++++.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 74332 3466667777777777777773
No 31
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.66 E-value=0.0027 Score=70.98 Aligned_cols=158 Identities=17% Similarity=0.241 Sum_probs=107.3
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEc--ccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccc
Q 002867 49 LISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTY--VFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVC 126 (872)
Q Consensus 49 ~~sG~~Hy~R~~~~~W~~~l~k~ka~GlN~V~ty--v~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyic 126 (872)
.++..++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|--.+ .
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L-- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L-- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E--
Confidence 688888887765442 3444555679988874 6699999999999999 89999999999999974221 1
Q ss_pred eecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCccc---------cc
Q 002867 127 AEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEY---------EI 197 (872)
Q Consensus 127 aEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg~~~~---------~~ 197 (872)
=|.. ..|.|+...+... ....+...++++++++.++.++++ -|.|..|-|=||-=.... -+
T Consensus 81 -vW~~-~~P~w~~~~~~~~-~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~~ 150 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANGS-PDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPWY 150 (320)
T ss_dssp -EESS-SS-HHHHTSTTSS-BHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHHH
T ss_pred -EEcc-cccceeeeccCCC-cccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChhh
Confidence 1433 7899998741100 000123788899999999888872 178999999999632210 01
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcceEeeCC
Q 002867 198 GAPGRSYTRWAAKMAVGLGTGVPWIMCKQ 226 (872)
Q Consensus 198 ~~~~~~y~~~l~~~~~~~gi~vp~~~~~~ 226 (872)
...+.+|+...-+++++...++.||.++-
T Consensus 151 ~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 151 DALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 11236788888888888888888888774
No 32
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.53 E-value=0.035 Score=56.48 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=78.8
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEcccCCccC-----CC---CceeeeccchhHHHHHHHHHHcCCEEEEecCccccee
Q 002867 57 PRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-----PS---PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (872)
Q Consensus 57 ~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hE-----p~---~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaE 128 (872)
-.++++.|+++|+.||++|+++|=+- |...+ |. ++.|.-....-|+.+|++|++.||+|.+..+ .
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~--- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--F--- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--C---
Confidence 47899999999999999999998421 22111 11 2233334456899999999999999998643 1
Q ss_pred cCCCCCCcccccCCCeeeecCChhh-HHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCCCCHHHHHH
Q 002867 129 WNFGGFPVWLKYIPGINFRTENGPF-KAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRW 207 (872)
Q Consensus 129 w~~GGlP~WL~~~p~~~~Rt~dp~y-~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg~~~~~~~~~~~~y~~~ 207 (872)
-|.|..+ .|+.. .+..++..++|..... +....-+|=|-.|..... ....+..+.
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~yg-------~h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQRYG-------HHPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHHHc-------CCCCCceEEEecccCCcc----cchHHHHHH
Confidence 1233321 22222 1222334444444444 333556677777776543 234566666
Q ss_pred HHHHHHhcCCCcce
Q 002867 208 AAKMAVGLGTGVPW 221 (872)
Q Consensus 208 l~~~~~~~gi~vp~ 221 (872)
|.+.+++.--+-|+
T Consensus 144 l~~~lk~~s~~~Pv 157 (166)
T PF14488_consen 144 LGKYLKQISPGKPV 157 (166)
T ss_pred HHHHHHHhCCCCCe
Confidence 66666553224443
No 33
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.47 E-value=0.0083 Score=69.26 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=72.5
Q ss_pred CcccH-----HHHHHHHHHCCCCEEEEcccCCccCCC----CceeeeccchhHHHHHHHHHHcCCEEEEec----Ccccc
Q 002867 60 SPEMW-----PDLIQKAKDGGLDVIQTYVFWNGHEPS----PGKYYFEGNYDLVKFIKLAKQAGLYVNLRI----GPYVC 126 (872)
Q Consensus 60 ~~~~W-----~~~l~k~ka~GlN~V~tyv~Wn~hEp~----~G~ydf~g~~dl~~fl~la~~~GL~Vilrp----GPyic 126 (872)
...-| ++.+..||.+|||+||.++.|..+++. |...+-+-...|++.|+.|++.||+|+|-. |.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 45567 899999999999999999994443554 333322222389999999999999999872 22222
Q ss_pred eecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccC
Q 002867 127 AEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGP 192 (872)
Q Consensus 127 aEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg~ 192 (872)
-| ..|....- ......+++..+-.+.|+.+.+ +.-.||++|+=||.-.
T Consensus 146 ~~------~s~~~~~~-----~~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSDY-----KEENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred cC------cccccccc-----cccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 11 12222110 0012233444444555555555 3458999999999874
No 34
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.34 E-value=0.01 Score=69.94 Aligned_cols=96 Identities=13% Similarity=0.111 Sum_probs=76.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~--~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~ 139 (872)
..|+++++.||++|+|+-++-|.|.-..|. +|++|-.|....+++|+.+.++||..++-. -.=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 358899999999999999999999999997 567898999999999999999999977642 1236899997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 140 ~~-p~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
.. -+- .++...++-.+|.+.++++++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 64 332 345566666666666666666
No 35
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.17 E-value=0.005 Score=72.36 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=73.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~--~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~ 139 (872)
..|+++++.||++|+|+.++-+.|.-.+|. ++++|-+|....+++|+.+.++||..++-. ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 347999999999999999999999999997 566788888899999999999999976542 1336899997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 140 ~~-p~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
.. -+- .++...++..+|.+.+++++.
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 332 345555555555555555555
No 36
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.12 E-value=0.0096 Score=59.49 Aligned_cols=67 Identities=31% Similarity=0.533 Sum_probs=50.3
Q ss_pred CCCceEEEEEEECCCCC--CceEEEeCCC-ceEEEEECCeeccccccccccCCCCCcccccCccccccccCCCCCCceee
Q 002867 648 RQPLTWYRTTFSAPAGN--APLALDMGSM-GKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRW 724 (872)
Q Consensus 648 ~~~~~fY~~tF~lp~~~--dp~~Ld~~g~-gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~~G~~~~~~~~~~~g~PQqtl 724 (872)
..+..||+.+|++|+.. ..++|.+.+. ....|||||+-+|+-.... .. .-
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--------------------------~~-~~ 118 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--------------------------TP-FE 118 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT--------------------------S--EE
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc--------------------------CC-eE
Confidence 34679999999999642 3589999986 6999999999999976211 11 23
Q ss_pred eecCccccccCC-ceEEEE
Q 002867 725 YHVPRSWLKPTG-NLLVVF 742 (872)
Q Consensus 725 Y~VP~~~Lk~g~-N~Ivvf 742 (872)
+.|+. .|++|+ |+|.|.
T Consensus 119 ~dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 119 FDITD-YLKPGEENTLAVR 136 (167)
T ss_dssp EECGG-GSSSEEEEEEEEE
T ss_pred EeChh-hccCCCCEEEEEE
Confidence 55765 789888 998873
No 37
>PLN02998 beta-glucosidase
Probab=96.06 E-value=0.0061 Score=72.01 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCccccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~ 140 (872)
..|+++++.||++|+|+-++-|.|.-.+|. .|.+|-+|...-+++|+.+.++||..++-- -.=-+|.||..
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL--------~H~dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL--------HHFDLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999996 678899999999999999999999866432 12247999976
Q ss_pred C-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 141 I-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 141 ~-p~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
. -+-.=|..=..|.++++.-++++..+++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4431122223455555555555555554
No 38
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.01 E-value=0.033 Score=67.49 Aligned_cols=100 Identities=24% Similarity=0.218 Sum_probs=68.4
Q ss_pred CCcceEEEEEEecCCCCCccccCCCcceEEecCcceEEEEEECCEEEEEEEcccCCCeeEEEeeeeccCCc-cEEEEEEe
Q 002867 471 DATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGI-NKIALLSI 549 (872)
Q Consensus 471 d~~GyllYrt~i~~~~~~~~~~~~~~~~L~v~~~~d~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILve 549 (872)
+..|..|||++|.++... .+....|.+.++...|.|||||++||...+- ...+.+.++-.|+.|. |+|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~--~~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGG--YTPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCC--ccceEEeCchhccCCCceEEEEEEe
Confidence 367899999999875321 2345789999999999999999999997653 2345555554466775 49999998
Q ss_pred ccCCcc---ccCCC-------------C-ccccceeccEEEccc
Q 002867 550 AVGLPN---VGPHF-------------E-TWNAGVLGPVTLNGL 576 (872)
Q Consensus 550 n~Gr~N---yG~~~-------------~-~~~kGI~g~V~L~g~ 576 (872)
|.-+.. .|... . -...||..+|.|...
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 742110 11100 0 135799999999554
No 39
>PLN02814 beta-glucosidase
Probab=95.86 E-value=0.0084 Score=70.99 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=72.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCccccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~ 140 (872)
..|+++++.||++|+|+-++-|.|.-.+|. +|.+|-+|...-+++|+.+.++||..++-- . =| -+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL---~--H~---dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL---Y--HY---DLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe---c--CC---CCCHHHHH
Confidence 458999999999999999999999999996 688999999999999999999999966532 1 13 47999986
Q ss_pred C-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 141 I-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 141 ~-p~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
. -+-.-|..=..|.++++..++++..+++
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 4 4421111123344544444444444444
No 40
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.82 E-value=0.011 Score=69.55 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~--~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~ 139 (872)
..|+++++.||++|+|+-++-|.|.-.+|. +|++|=.|...-+++|+.+.++||..++-- -.=-+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 458999999999999999999999999997 667888899999999999999999866432 1225899997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 140 ~~-p~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
.. -+-.=|..=..|.++++.-++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 64 4431111113455555555555555554
No 41
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.81 E-value=0.026 Score=66.31 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=74.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCccccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~ 140 (872)
..|+++++.||++|+|+-++-|.|.-.+|. +|.+|=+|...-+++|+.+.++||..++--= .=-+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~--------H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH--------HFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc--------CCCCcHHHHH
Confidence 458899999999999999999999999996 6788888999999999999999999765421 2248999986
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 141 IPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 141 ~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
.-+- .++...++-.+|.+.+++++.
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5442 344445555555555555555
No 42
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.73 E-value=0.012 Score=69.33 Aligned_cols=96 Identities=11% Similarity=0.111 Sum_probs=72.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCccccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~ 140 (872)
..|+++++.||++|+|+-++-|.|.-.+|. .|.+|-.|...-+++|+.+.++||.-++-. -.=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 347899999999999999999999999997 578899999999999999999999866532 12258999986
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 141 IPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 141 ~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
.-+- .++...++-.+|.+.+++++.
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5332 344444444555555555544
No 43
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.67 E-value=0.012 Score=69.19 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=73.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~--~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~ 139 (872)
..|+++++.||++|+|+-++-|.|.-.+|. +|.+|=.|...-+++|+.+.++||..++-. -.=-+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 448999999999999999999999999997 567888899999999999999999866542 1225899997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 140 ~~-p~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
.. -+-.-|..=..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 64 4431122123455555555555555554
No 44
>PLN02849 beta-glucosidase
Probab=95.61 E-value=0.012 Score=69.65 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=72.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCccccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~-~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~ 140 (872)
..|+++++.||++|+|+-++-|.|.-.+|. .|.+|-+|...-+++|+.+.++||.-++-- -.=-+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHHH
Confidence 358999999999999999999999999996 478888999999999999999999966532 12248999976
Q ss_pred C-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 141 I-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 141 ~-p~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
. -+-.=|..=..|.++++..++++..+++
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 4421121123355555555555555554
No 45
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.36 E-value=0.057 Score=69.26 Aligned_cols=94 Identities=21% Similarity=0.293 Sum_probs=67.0
Q ss_pred ceEEEEEEecCCCCCccccCCCcceEEecCcceEEEEEECCEEEEEEEcccCCCeeEEEeeeeccCCccEEEEEEeccCC
Q 002867 474 DYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGL 553 (872)
Q Consensus 474 GyllYrt~i~~~~~~~~~~~~~~~~L~v~~~~d~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr 553 (872)
+--|||++|.++..- .+.+..|.+.++...+.|||||++||...+.. ..+.|.++--|+.|.|+|.|.|.+...
T Consensus 109 ~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~d 182 (1021)
T PRK10340 109 PTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWAD 182 (1021)
T ss_pred CeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecCC
Confidence 667999999875431 23457899999999999999999999876432 345565554577788999999975432
Q ss_pred ccccCCCCc----cccceeccEEEccc
Q 002867 554 PNVGPHFET----WNAGVLGPVTLNGL 576 (872)
Q Consensus 554 ~NyG~~~~~----~~kGI~g~V~L~g~ 576 (872)
-.| ++. ...||..+|.|--.
T Consensus 183 ~s~---le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 183 STY---LEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred CCc---cccCCccccccccceEEEEEe
Confidence 222 221 23799999999554
No 46
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.55 E-value=0.16 Score=55.58 Aligned_cols=118 Identities=28% Similarity=0.332 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHH---HcCCEEEEecCcccceecCCCCCCcccc
Q 002867 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAK---QAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (872)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~---~~GL~VilrpGPyicaEw~~GGlP~WL~ 139 (872)
.=+|.|+-+|+.|+|-|+.-| ||.---..|.=-=.|+.|+.+.|++|+ ..||+|+|.+= .-+|..
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwa 131 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWA 131 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhcc
Confidence 346899999999999999865 665433333333346789999998875 57999999752 112221
Q ss_pred c-----CCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccC-cccccC
Q 002867 140 Y-----IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGP-MEYEIG 198 (872)
Q Consensus 140 ~-----~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg~-~~~~~~ 198 (872)
. .|.-..--+-..-.+++-.|.+..+..+++. |=-+=||||.||-.+ +-++.|
T Consensus 132 DPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn~gflwp~G 190 (403)
T COG3867 132 DPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETNGGFLWPDG 190 (403)
T ss_pred ChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccCCceeccCC
Confidence 1 1211111223345677888889999998854 445679999999743 333344
No 47
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.53 E-value=0.14 Score=65.75 Aligned_cols=95 Identities=22% Similarity=0.290 Sum_probs=65.4
Q ss_pred cceEEEEEEecCCCCCccccCCC-cceEEecCcceEEEEEECCEEEEEEEcccCCCeeEEEeeeeccCCccEEEEEEecc
Q 002867 473 TDYLWYMTDVKIDPSEGFLRSGN-YPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAV 551 (872)
Q Consensus 473 ~GyllYrt~i~~~~~~~~~~~~~-~~~L~v~~~~d~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~ 551 (872)
.+-.|||++|..+.. |. +. +..|.+.++.-.+.|||||++||...+. ...+.|.++-.|+.|.|+|.|.|..-
T Consensus 119 n~~gwYrr~F~vp~~--w~--~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~--~~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDES--WL--QSGQTRIIFDGVNSAFHLWCNGRWVGYSQDS--RLPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChh--hc--CCCeEEEEECeeccEEEEEECCEEEEeecCC--CceEEEEChhhhcCCccEEEEEEEec
Confidence 367899999987542 11 12 4678999999999999999999987543 23455665545778889999988432
Q ss_pred CCccccCCCCc----cccceeccEEEccc
Q 002867 552 GLPNVGPHFET----WNAGVLGPVTLNGL 576 (872)
Q Consensus 552 Gr~NyG~~~~~----~~kGI~g~V~L~g~ 576 (872)
-. |..++. ...||..+|.|--.
T Consensus 193 sd---gs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 SD---GSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred CC---CCccccCCceeeccccceEEEEEc
Confidence 21 122221 23699999998554
No 48
>PRK09936 hypothetical protein; Provisional
Probab=94.11 E-value=0.15 Score=55.85 Aligned_cols=57 Identities=26% Similarity=0.409 Sum_probs=47.1
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEcccCCcc-CCCCceeeeccc-hhHHHHHHHHHHcCCEEEEe
Q 002867 57 PRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGH-EPSPGKYYFEGN-YDLVKFIKLAKQAGLYVNLR 120 (872)
Q Consensus 57 ~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~h-Ep~~G~ydf~g~-~dl~~fl~la~~~GL~Vilr 120 (872)
.+++++.|+++++.+|+.|++|+= |=|.-- |. ||.+. -+|.+.++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLi--vQWt~yG~~-----~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLV--VQWTRYGDA-----DFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE--EEeeeccCC-----CcccchHHHHHHHHHHHHcCCEEEEc
Confidence 468999999999999999999864 456543 22 88764 59999999999999999884
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.10 E-value=0.27 Score=48.32 Aligned_cols=98 Identities=14% Similarity=0.176 Sum_probs=64.3
Q ss_pred HHHHHHHHCCCCEEEEccc----C-----CccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCc
Q 002867 66 DLIQKAKDGGLDVIQTYVF----W-----NGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPV 136 (872)
Q Consensus 66 ~~l~k~ka~GlN~V~tyv~----W-----n~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~ 136 (872)
+-++.+|++|+|+|.++.= | ..|.+.|+- . ..-|.++++.|++.||.|+.|...- --|+-.--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~---~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-K---RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-C---cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4467899999999998442 2 234455554 1 2257999999999999999997654 33444445799
Q ss_pred ccccCCCee-------------eecCChhhHHHHHHHHHHHHHHH
Q 002867 137 WLKYIPGIN-------------FRTENGPFKAEMHKFTKKIVDMM 168 (872)
Q Consensus 137 WL~~~p~~~-------------~Rt~dp~y~~~~~~~~~~l~~~i 168 (872)
|+..+++-+ .-..+.+|++.+.+-+++|+.++
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 997643311 11224578877666666666544
No 50
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.60 E-value=0.083 Score=61.45 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=72.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCCCc--eeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPG--KYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G--~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~ 139 (872)
..++++++.||+||+|+.++-|.|.-.-|..+ +.+=.|.+.-+++++.|.++||.-++-. ..=-+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL--------~Hfd~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL--------YHFDLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCcHHHh
Confidence 34789999999999999999999999999655 4888899999999999999999976542 1223799998
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 140 ~~-p~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
+. -+- .+..-.++-.+|.+.++++++
T Consensus 131 ~~ygGW----~nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGW----ENRETVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCc----cCHHHHHHHHHHHHHHHHHhc
Confidence 75 343 233334445555555665555
No 51
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=92.35 E-value=0.093 Score=60.60 Aligned_cols=157 Identities=17% Similarity=0.173 Sum_probs=109.9
Q ss_pred cEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcc-CC---CCceeee-ccchhHHHHHHHHHHc
Q 002867 39 AIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGH-EP---SPGKYYF-EGNYDLVKFIKLAKQA 113 (872)
Q Consensus 39 ~~~idG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~h-Ep---~~G~ydf-~g~~dl~~fl~la~~~ 113 (872)
.|.++++++..++..--+.++-.++-+++|+.|+-+|+++++.. .+- |+ ++|.-+- ++..-++.|++.|..+
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 37888888888877777778877788899999999999999994 454 66 2333222 2456899999999999
Q ss_pred CCEEEEecCcccceecCCCCCC---ccccc-CCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc
Q 002867 114 GLYVNLRIGPYVCAEWNFGGFP---VWLKY-IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENE 189 (872)
Q Consensus 114 GL~VilrpGPyicaEw~~GGlP---~WL~~-~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENE 189 (872)
+|+|+++. |.+-=.+||.- .|.-. .|+-. -.|+.++..-++|...+++-++ ....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~--iyD~k~~~~~kkyvedlVk~yk-------~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNV--IYDPKFRGPGKKYVEDLVKPYK-------LDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCcccc--ccchhhcccHHHHHHHHhhhhc-------cChHHHHHHhcCC
Confidence 99998873 44444566653 34321 23311 1367777777888888877554 3457889999999
Q ss_pred ccCcccccCCCCHHHHHHHHHHHH
Q 002867 190 YGPMEYEIGAPGRSYTRWAAKMAV 213 (872)
Q Consensus 190 yg~~~~~~~~~~~~y~~~l~~~~~ 213 (872)
.... -...+..+++|+++|+.
T Consensus 148 --~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred --cccc-ccCChhHHHHHHHHHHH
Confidence 3211 12357899999999973
No 52
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=92.07 E-value=21 Score=41.29 Aligned_cols=245 Identities=12% Similarity=0.134 Sum_probs=125.8
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEE-------cccCCccCCCCceeeec-cchhHHHHHHHHHHcCCEEEEecCccc
Q 002867 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPSPGKYYFE-GNYDLVKFIKLAKQAGLYVNLRIGPYV 125 (872)
Q Consensus 54 ~Hy~R~~~~~W~~~l~k~ka~GlN~V~t-------yv~Wn~hEp~~G~ydf~-g~~dl~~fl~la~~~GL~VilrpGPyi 125 (872)
+.+.+..++.| .+.+|++|+.-|-. +-.|.-....-..-+-. ++.-|.++.+.|+++||++-+ |.
T Consensus 76 F~p~~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~ 148 (384)
T smart00812 76 FTAEKFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YH 148 (384)
T ss_pred CCchhCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----Ec
Confidence 34445667777 56788999985542 11244332211111111 233567899999999998766 43
Q ss_pred ce-ecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCCCCHHH
Q 002867 126 CA-EWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSY 204 (872)
Q Consensus 126 ca-Ew~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg~~~~~~~~~~~~y 204 (872)
-. +|.. |.|....+.-..+.+.+.|.++++.|+.+|.+.+.++ ||-++|- +-..+.. ...--
T Consensus 149 S~~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~ 211 (384)
T smart00812 149 SLFDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWR 211 (384)
T ss_pred CHHHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhc
Confidence 33 6654 5543221111123456788888888888888888733 2333331 1111110 11112
Q ss_pred HHHHHHHHHhcCCCc--ceEeeCCCCCCCccccCCCCc--cc-ccCCCC-CCCCCce-eeecccccccccCC-CCCCCCh
Q 002867 205 TRWAAKMAVGLGTGV--PWIMCKQDDAPDPLINTCNGF--YC-DYFSPN-KAYKPKM-WTEAWTGWYTEFGG-PVPHRPV 276 (872)
Q Consensus 205 ~~~l~~~~~~~gi~v--p~~~~~~~~~~~~~~~~~ng~--~~-~~~~~~-~p~~P~~-~~E~~~Gwf~~WG~-~~~~~~~ 276 (872)
.+.|.+++++..-+. .++ ++... ... .. .+. .+ +...+. ....|.- ++=.-.+|+-+-++ ....+++
T Consensus 212 ~~~l~~~~~~~qP~~~~vvv-n~R~~-~~~--~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~ 286 (384)
T smart00812 212 SKEFLAWLYNLSPVKDTVVV-NDRWG-GTG--CK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSP 286 (384)
T ss_pred HHHHHHHHHHhCCCCceEEE-Ecccc-ccC--CC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCH
Confidence 455667777654443 122 22210 000 00 010 01 111111 0111211 11111245544443 2336789
Q ss_pred HHHHHHHHHHHHcCCeeeeeeeeecCCCCCCCCCCCcccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHhhcCCc
Q 002867 277 EDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPAL 352 (872)
Q Consensus 277 ~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~i~~~~~~l 352 (872)
+++...+.+..++|++++ .| -+-+.+|.+..+.-..|+++...++.....+
T Consensus 287 ~~li~~l~~~Vsk~GnlL-------------LN------------VgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaI 337 (384)
T smart00812 287 KELIRDLVDIVSKGGNLL-------------LN------------VGPKADGTIPEEEEERLLEIGKWLKVNGEAI 337 (384)
T ss_pred HHHHHHHhhhcCCCceEE-------------Ec------------cCCCCCCCCCHHHHHHHHHHHHHHHhCCcee
Confidence 999999999999998852 12 2234677776667778999999988765544
No 53
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.50 E-value=2.4 Score=51.87 Aligned_cols=69 Identities=22% Similarity=0.197 Sum_probs=45.1
Q ss_pred EEeeCCCCCc-ccHHH---HH-HHHHHCCCCEEEE-cccCCccCCCCcee----------eeccchhHHHHHHHHHHcCC
Q 002867 52 GSIHYPRSSP-EMWPD---LI-QKAKDGGLDVIQT-YVFWNGHEPSPGKY----------YFEGNYDLVKFIKLAKQAGL 115 (872)
Q Consensus 52 G~~Hy~R~~~-~~W~~---~l-~k~ka~GlN~V~t-yv~Wn~hEp~~G~y----------df~g~~dl~~fl~la~~~GL 115 (872)
=|+|..-..+ -.++. +| .-+|++|+|+|+. +|+.+-.... --| .|.+..||.+||+.|+++||
T Consensus 142 Ye~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~-wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi 220 (613)
T TIGR01515 142 YELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGS-WGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGI 220 (613)
T ss_pred EEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCC-CCCCcccCcccccccCCHHHHHHHHHHHHHCCC
Confidence 3566533322 23433 43 6779999999997 7765321110 012 34456799999999999999
Q ss_pred EEEEec
Q 002867 116 YVNLRI 121 (872)
Q Consensus 116 ~Vilrp 121 (872)
.|||..
T Consensus 221 ~VilD~ 226 (613)
T TIGR01515 221 GVILDW 226 (613)
T ss_pred EEEEEe
Confidence 999974
No 54
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=90.61 E-value=1 Score=50.38 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=70.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCC-------ccCCC-------CceeeeccchhHHHHHHHHHHcCCEEEEecCccc
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWN-------GHEPS-------PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYV 125 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn-------~hEp~-------~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyi 125 (872)
.++.-++.|++++++|||+|=.-|.+. -.+|. +|. + -|..-|..+|+.|++.||.|..+. .+-
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~-~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWF-RVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEE-Eee
Confidence 677789999999999999997555431 12221 111 1 012279999999999999998765 111
Q ss_pred ceecC----CCCCCcccc-cCCCeeeec----C-----ChhhHHHHHHHHHHHHHHHH-hcccccccCCceEeecccc
Q 002867 126 CAEWN----FGGFPVWLK-YIPGINFRT----E-----NGPFKAEMHKFTKKIVDMMK-AERLFESQGGPIILSQIEN 188 (872)
Q Consensus 126 caEw~----~GGlP~WL~-~~p~~~~Rt----~-----dp~y~~~~~~~~~~l~~~i~-~~~~~~~~gGpII~vQiEN 188 (872)
...-. .-..|.|+. +.++..... . ||. ..+|+.|+..++..|. ++ +|=++|++-
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~-~PeVr~~i~~~v~Eiv~~Y--------dvDGIhlDd 162 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPG-HPEVRDYIIDIVKEIVKNY--------DVDGIHLDD 162 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCC-CHHHHHHHHHHHHHHHhcC--------CCCeEEecc
Confidence 11001 112578876 355532322 1 222 3677777777666654 33 466888873
No 55
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.77 E-value=2.6 Score=48.94 Aligned_cols=123 Identities=21% Similarity=0.283 Sum_probs=80.0
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcc-------------cCCccCCCCceee-eccchhHHHHHHHHHHcCCEEEEecCcc
Q 002867 59 SSPEMWPDLIQKAKDGGLDVIQTYV-------------FWNGHEPSPGKYY-FEGNYDLVKFIKLAKQAGLYVNLRIGPY 124 (872)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~tyv-------------~Wn~hEp~~G~yd-f~g~~dl~~fl~la~~~GL~VilrpGPy 124 (872)
..+..-.+.|.+++++|+|||-.-| +|..-- ||+.- =.|..-|...|++|++.||.|+.+.=||
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 3677888999999999999996322 244332 44431 1244478899999999999999998888
Q ss_pred cceecCCCC---CCcccccC-CCe-eeecCC-------hhhHHHHHHHHHHH-HHHHHhcccccccCCceEeeccccccc
Q 002867 125 VCAEWNFGG---FPVWLKYI-PGI-NFRTEN-------GPFKAEMHKFTKKI-VDMMKAERLFESQGGPIILSQIENEYG 191 (872)
Q Consensus 125 icaEw~~GG---lP~WL~~~-p~~-~~Rt~d-------p~y~~~~~~~~~~l-~~~i~~~~~~~~~gGpII~vQiENEyg 191 (872)
.-|--..-. -|.|+... |+. ..|... .++.-+|+.|+..+ ++.++++ .|-++|++-=++
T Consensus 139 ~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 139 RMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred ccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 766322111 36777653 443 233332 13457788888775 4555533 567889876655
No 56
>smart00642 Aamy Alpha-amylase domain.
Probab=89.37 E-value=0.94 Score=46.07 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccC-------CCCcee-----eeccchhHHHHHHHHHHcCCEEEEecCccccee
Q 002867 63 MWPDLIQKAKDGGLDVIQTYVFWNGHE-------PSPGKY-----YFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (872)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~tyv~Wn~hE-------p~~G~y-----df~g~~dl~~fl~la~~~GL~VilrpGPyicaE 128 (872)
-+.+.|.-+|++|+|+|.+-=++..-+ -.+..| .|....++.++++.|+++||.||+..=|-=++.
T Consensus 20 gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 20 GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 355667779999999998743322211 112222 355668999999999999999999864444444
No 57
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=89.30 E-value=5.5 Score=43.28 Aligned_cols=127 Identities=14% Similarity=0.211 Sum_probs=76.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE-EecCcccceecCCCCCCcccc
Q 002867 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFPVWLK 139 (872)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vi-lrpGPyicaEw~~GGlP~WL~ 139 (872)
...|++.|+.++++|++.|+..+ +.. ...+...+++ ..++.++.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 46799999999999999999943 222 2223445555 3478999999999999875 44321 01111
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCCC-------CHHHHHHHHHHH
Q 002867 140 YIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAP-------GRSYTRWAAKMA 212 (872)
Q Consensus 140 ~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg~~~~~~~~~-------~~~y~~~l~~~~ 212 (872)
+-+.|+.-+++....++..++..+ .+ |.++|.+- ..++. ++.. -.+.++.|.+.+
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~-----~~~~~~~~~~~~~~~l~~l~~~A 142 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVY-----YEEHDEETRRRFREGLKEAVELA 142 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Ccccc-----cCcCCHHHHHHHHHHHHHHHHHH
Confidence 122356666666777777777777 33 56666542 11110 1111 124556666677
Q ss_pred HhcCCCc
Q 002867 213 VGLGTGV 219 (872)
Q Consensus 213 ~~~gi~v 219 (872)
++.|+.+
T Consensus 143 ~~~Gv~l 149 (279)
T TIGR00542 143 ARAQVTL 149 (279)
T ss_pred HHcCCEE
Confidence 7777754
No 58
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=89.15 E-value=3.8 Score=48.66 Aligned_cols=150 Identities=19% Similarity=0.271 Sum_probs=96.4
Q ss_pred cCcEEECCeEeEEEEEEeeC-----CCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHH
Q 002867 37 SKAIAINGKRRILISGSIHY-----PRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAK 111 (872)
Q Consensus 37 ~~~~~idG~p~~~~sG~~Hy-----~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~ 111 (872)
+..|.|++.|.++-+++--+ .|..-+.-+-.|+-++++|+|++++ |.. |.| .-++|-++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----GvY------Esd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----GVY------ESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----ccc------cchhHHHHhh
Confidence 35688999999988887543 2344555666799999999999999 553 333 4689999999
Q ss_pred HcCCEEEEecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecc--ccc
Q 002867 112 QAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQI--ENE 189 (872)
Q Consensus 112 ~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQi--ENE 189 (872)
+.||.|--.. =+.||- =..|..|++-|+.=++.=+.+|+.|| .||.+-= |||
T Consensus 393 ~lGilVWQD~-MFACAl------------------YPt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACAL------------------YPTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhc------------------ccCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccH
Confidence 9999775332 133433 23567899998888888788888554 5666653 444
Q ss_pred -------ccCcccccCCCCHHH----HHHHHHHHHhcCCCcceEeeCC
Q 002867 190 -------YGPMEYEIGAPGRSY----TRWAAKMAVGLGTGVPWIMCKQ 226 (872)
Q Consensus 190 -------yg~~~~~~~~~~~~y----~~~l~~~~~~~gi~vp~~~~~~ 226 (872)
||.....-.-.-++| .+-++++.....-..|++++..
T Consensus 447 aAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 447 AALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 332110000012333 3445555555556678888654
No 59
>PRK14706 glycogen branching enzyme; Provisional
Probab=88.35 E-value=5.3 Score=49.13 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=35.4
Q ss_pred HHHHHCCCCEEEE-ccc-------CCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEec
Q 002867 69 QKAKDGGLDVIQT-YVF-------WNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 69 ~k~ka~GlN~V~t-yv~-------Wn~hEp~--~G~ydf~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
.-+|++|+|+|+. .|. |.+.-.- .=.=.|....||.+||+.|+++||.|||-.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 5689999999995 332 3221000 000013345799999999999999999873
No 60
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=84.98 E-value=6 Score=42.79 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=75.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE-EecCcccceecCCCCCCccccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFPVWLKY 140 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vi-lrpGPyicaEw~~GGlP~WL~~ 140 (872)
-.|++.++.++++|+..|+..+. ..|+ .....+|+ ..++.++-++++++||.|. +.++ +.-.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~--- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF--- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc---
Confidence 46999999999999999999632 2222 11123343 3479999999999999875 3322 11001
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcc--cccCCCCHHHHHHHHHHHHhcCCC
Q 002867 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPME--YEIGAPGRSYTRWAAKMAVGLGTG 218 (872)
Q Consensus 141 ~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg~~~--~~~~~~~~~y~~~l~~~~~~~gi~ 218 (872)
.+.+.|+..+++..+.++++++.-+ .+ |.++|.+---..+.... ..+ ..-.+.++.+.+++++.|+.
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCE
Confidence 1224566666666667777777666 33 44555442100000000 000 01134677777888888876
Q ss_pred c
Q 002867 219 V 219 (872)
Q Consensus 219 v 219 (872)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 4
No 61
>PRK12568 glycogen branching enzyme; Provisional
Probab=84.95 E-value=13 Score=46.33 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=39.1
Q ss_pred HHHHHHHCCCCEEEE-ccc-------CCccCCCCcee----eeccchhHHHHHHHHHHcCCEEEEecCc
Q 002867 67 LIQKAKDGGLDVIQT-YVF-------WNGHEPSPGKY----YFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (872)
Q Consensus 67 ~l~k~ka~GlN~V~t-yv~-------Wn~hEp~~G~y----df~g~~dl~~fl~la~~~GL~VilrpGP 123 (872)
.|.-+|++|+|+|+. +|+ |.+.- -|-| .|....++.+||+.|+++||.|||-.=|
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 467789999999996 443 43210 0111 3455679999999999999999997533
No 62
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=84.83 E-value=13 Score=46.55 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=43.2
Q ss_pred ccHHHHHHHHHHCCCCEEEE-ccc-------CCccCC---CCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 002867 62 EMWPDLIQKAKDGGLDVIQT-YVF-------WNGHEP---SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~t-yv~-------Wn~hEp---~~G~ydf~g~~dl~~fl~la~~~GL~VilrpG 122 (872)
+.|++.|.-+|++|+|+|+. .|+ |.++-. .+ .-.|....+|.+||+.|+++||.|||-.=
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV 321 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVV 321 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 34788899999999999996 332 433211 00 11345567999999999999999998743
No 63
>PRK05402 glycogen branching enzyme; Provisional
Probab=83.60 E-value=12 Score=46.76 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=36.7
Q ss_pred HHHHHHCCCCEEEE-cccCC----ccCCCCcee-----eeccchhHHHHHHHHHHcCCEEEEec
Q 002867 68 IQKAKDGGLDVIQT-YVFWN----GHEPSPGKY-----YFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 68 l~k~ka~GlN~V~t-yv~Wn----~hEp~~G~y-----df~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
|.-+|++|+|+|+. +|+=. .|--.+.-| .|.+..||.+||+.|+++||.|||-.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36679999999996 55410 011111111 24456799999999999999999973
No 64
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=83.56 E-value=3 Score=49.45 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=43.0
Q ss_pred EEEeeCCCCCcccHHHHHHHHH-HCCCCEEEEcccCCcc--------C-CCCc--eeeeccchhHHHHHHHHHHcCCEEE
Q 002867 51 SGSIHYPRSSPEMWPDLIQKAK-DGGLDVIQTYVFWNGH--------E-PSPG--KYYFEGNYDLVKFIKLAKQAGLYVN 118 (872)
Q Consensus 51 sG~~Hy~R~~~~~W~~~l~k~k-a~GlN~V~tyv~Wn~h--------E-p~~G--~ydf~g~~dl~~fl~la~~~GL~Vi 118 (872)
-|+-|....-++.|+..|+.++ +.||.-|++ |++. | ..+| .|||+ .||.+++...++||+-.
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~ 101 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPF 101 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEE
Confidence 3444555567788999999987 779999987 4433 1 1233 39999 89999999999999987
Q ss_pred EecC
Q 002867 119 LRIG 122 (872)
Q Consensus 119 lrpG 122 (872)
+..|
T Consensus 102 vel~ 105 (486)
T PF01229_consen 102 VELG 105 (486)
T ss_dssp EEE-
T ss_pred EEEE
Confidence 7654
No 65
>PRK01060 endonuclease IV; Provisional
Probab=82.89 E-value=17 Score=39.34 Aligned_cols=93 Identities=14% Similarity=0.212 Sum_probs=60.7
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEE---EEecCcccceecCCCCCCccccc
Q 002867 64 WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV---NLRIGPYVCAEWNFGGFPVWLKY 140 (872)
Q Consensus 64 W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~V---ilrpGPyicaEw~~GGlP~WL~~ 140 (872)
+++.|++++++|++.|+..+. +-|.-..+.++- .++.++-++++++||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 889999999999999998643 112212222322 26888999999999973 32 23331
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 002867 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ 185 (872)
Q Consensus 141 ~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQ 185 (872)
+.+-+.|+..+++..+.+++.++..+ .+ |-++|.+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12334577888887778888777776 33 44555553
No 66
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=82.37 E-value=1.8 Score=49.42 Aligned_cols=73 Identities=29% Similarity=0.265 Sum_probs=48.0
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCccccee
Q 002867 50 ISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (872)
Q Consensus 50 ~sG~~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaE 128 (872)
++=++++...+.+.....|++|+++|+. .||=++|.|+...=+. ...+..++++|+++||.|++.+.|=+...
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~----~iFTSL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~~ 74 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFK----RIFTSLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLKK 74 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEE----EEEEEE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHHT
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCC----EEECCCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHHH
Confidence 4556777777888999999999999995 4555899998543222 14799999999999999999987765443
No 67
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=81.83 E-value=2.3 Score=50.34 Aligned_cols=68 Identities=10% Similarity=0.219 Sum_probs=46.1
Q ss_pred eeCCCCC----cccHH---HHHHHHHHCCCCEEEE-cccCCc-----cCCCC-cee-------------eeccchhHHHH
Q 002867 54 IHYPRSS----PEMWP---DLIQKAKDGGLDVIQT-YVFWNG-----HEPSP-GKY-------------YFEGNYDLVKF 106 (872)
Q Consensus 54 ~Hy~R~~----~~~W~---~~l~k~ka~GlN~V~t-yv~Wn~-----hEp~~-G~y-------------df~g~~dl~~f 106 (872)
+|.|-++ .+.|. +.|.-+|++|+++|-+ +++-+. |--.+ .-| .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 4555543 34564 5677889999999986 455432 22221 122 23346799999
Q ss_pred HHHHHHcCCEEEEec
Q 002867 107 IKLAKQAGLYVNLRI 121 (872)
Q Consensus 107 l~la~~~GL~Vilrp 121 (872)
|+.|++.||+||+-.
T Consensus 87 i~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 87 IDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHCCCEEEEEE
Confidence 999999999999975
No 68
>PRK14705 glycogen branching enzyme; Provisional
Probab=81.57 E-value=22 Score=46.85 Aligned_cols=55 Identities=20% Similarity=0.136 Sum_probs=38.1
Q ss_pred HHHHHHHCCCCEEEE-ccc-------CCccC--CCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 002867 67 LIQKAKDGGLDVIQT-YVF-------WNGHE--PSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 67 ~l~k~ka~GlN~V~t-yv~-------Wn~hE--p~~G~ydf~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
.|.-+|++|+|+|+. .|+ |.+.- ...=.=.|....|+.+||+.|+++||.|||..
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 368899999999996 443 43210 00001124456799999999999999999873
No 69
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=79.71 E-value=2 Score=46.15 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=39.4
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCCc--eee-------eccchhHHHHHHHHHHcCCEEEEec
Q 002867 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPG--KYY-------FEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 65 ~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G--~yd-------f~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
.+.|.-+|++|+|+|.+-=++...+.--| .-| |....+|.++|+.|+++||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 45688999999999997533332111111 112 3345799999999999999999874
No 70
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=79.22 E-value=5.1 Score=52.67 Aligned_cols=111 Identities=15% Similarity=0.255 Sum_probs=66.5
Q ss_pred cEEECCeEeEEEEE---EeeCCCC--CcccHHHHHHHHHHCCCCEEEE-ccc-CCc---cCCCCceee----e----ccc
Q 002867 39 AIAINGKRRILISG---SIHYPRS--SPEMWPDLIQKAKDGGLDVIQT-YVF-WNG---HEPSPGKYY----F----EGN 100 (872)
Q Consensus 39 ~~~idG~p~~~~sG---~~Hy~R~--~~~~W~~~l~k~ka~GlN~V~t-yv~-Wn~---hEp~~G~yd----f----~g~ 100 (872)
.+.|||++++.+.+ +-..+++ +-+.|++.|+.+|++|.|+|.. +++ =.. .=...+.+. | .+.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 45666644444333 2245554 5577999999999999999985 454 111 001112222 3 256
Q ss_pred hhHHHHHHHHHHc-CCEEEEecCcccceecCCCCC-CcccccCCCeeeecCChhhHH
Q 002867 101 YDLVKFIKLAKQA-GLYVNLRIGPYVCAEWNFGGF-PVWLKYIPGINFRTENGPFKA 155 (872)
Q Consensus 101 ~dl~~fl~la~~~-GL~VilrpGPyicaEw~~GGl-P~WL~~~p~~~~Rt~dp~y~~ 155 (872)
.|+.++++.|++. ||++|+..= |+.-+- =.||.++|+.-.-..+.+||+
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDvV------~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~ 234 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDIV------FNHTANNSPWLLEHPEAAYNCITSPHLR 234 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEee------ecccccCCHHHHhChHhhcCCCCCchhh
Confidence 7999999999996 999998731 222222 258877776433333444443
No 71
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=78.65 E-value=16 Score=39.73 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHc-CCEEEEecCcccceecCCCCCCccccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQA-GLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~-GL~VilrpGPyicaEw~~GGlP~WL~~ 140 (872)
..|++.|+.+|++|++.|+.-+....-.. .......+++++.++++++ ++.+.+- +||.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~--------------- 69 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL----SRPLKKERAEKFKAIAEEGPSICLSVH-APYL--------------- 69 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC----CCCCCHHHHHHHHHHHHHcCCCcEEEE-cCce---------------
Confidence 67999999999999999998764321111 1111346899999999999 7666543 2231
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeeccc
Q 002867 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIE 187 (872)
Q Consensus 141 ~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiE 187 (872)
..+.+.++.-+++....+++.++..+ .+ |-+.|.+...
T Consensus 70 ---~~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g 107 (279)
T cd00019 70 ---INLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPG 107 (279)
T ss_pred ---eccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCC
Confidence 11223345445555555666666666 32 4456665543
No 72
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=77.93 E-value=7.8 Score=39.20 Aligned_cols=123 Identities=17% Similarity=0.153 Sum_probs=71.9
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE-ecCcccceecCCCCCCcccccCCCeee
Q 002867 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL-RIGPYVCAEWNFGGFPVWLKYIPGINF 146 (872)
Q Consensus 68 l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vil-rpGPyicaEw~~GGlP~WL~~~p~~~~ 146 (872)
|+.++++|+..|+....+....... ...++++.++++++||.+.. .+. .. +. .+....
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~-~~---~~----------~~~~~~ 59 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPP-TN---FW----------SPDEEN 59 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEE-ES---SS----------CTGTTS
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecc-cc---cc----------cccccc
Confidence 6789999999999876543322111 34799999999999999653 221 10 00 010112
Q ss_pred ecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeeccc--ccccCcc--cccCCCCHHHHHHHHHHHHhcCCCc
Q 002867 147 RTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIE--NEYGPME--YEIGAPGRSYTRWAAKMAVGLGTGV 219 (872)
Q Consensus 147 Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiE--NEyg~~~--~~~~~~~~~y~~~l~~~~~~~gi~v 219 (872)
++.+++ ++.....+.+.++..+ .+ |...|.+..- +...... ..+ +.-.+.++.|.+.+++.|+.+
T Consensus 60 ~~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 60 GSANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TTSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEE
T ss_pred cCcchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceE
Confidence 334444 7777778888888887 33 5566766643 1111110 000 122346677777777778664
No 73
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=75.90 E-value=34 Score=36.90 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=69.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE-ecCcccceecCCCCCCccccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL-RIGPYVCAEWNFGGFPVWLKY 140 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vil-rpGPyicaEw~~GGlP~WL~~ 140 (872)
..|++.|+.++++|++.|++..-. .|+-.+ +++ ..+++++-++++++||.|.. .++ .+++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s~~~~--------~~~~~~~~~- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIGYTPE--------TNGYPYNMM- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEEecCc--------ccCcCcccc-
Confidence 359999999999999999983210 011111 122 24789999999999999753 221 123333322
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc-cc-CcccccCCCCHHHHHHHHHHHHhcCCC
Q 002867 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENE-YG-PMEYEIGAPGRSYTRWAAKMAVGLGTG 218 (872)
Q Consensus 141 ~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENE-yg-~~~~~~~~~~~~y~~~l~~~~~~~gi~ 218 (872)
..++.-+++..+.+++.++.-+ .+ |.+.|.+-.-.. +. .....+ ..-.+.++.|.+.+++.|+.
T Consensus 79 -------~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 79 -------LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMD 144 (275)
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCE
Confidence 1234445555555666666555 32 445554421110 00 000000 01234577777778777765
Q ss_pred c
Q 002867 219 V 219 (872)
Q Consensus 219 v 219 (872)
+
T Consensus 145 l 145 (275)
T PRK09856 145 L 145 (275)
T ss_pred E
Confidence 4
No 74
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=75.28 E-value=8 Score=43.52 Aligned_cols=112 Identities=20% Similarity=0.269 Sum_probs=69.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-------ccCCccCCCCceeeec-c-chhHHHHHHHHHHcCCEEEEecCcccceecC
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTY-------VFWNGHEPSPGKYYFE-G-NYDLVKFIKLAKQAGLYVNLRIGPYVCAEWN 130 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~ty-------v~Wn~hEp~~G~ydf~-g-~~dl~~fl~la~~~GL~VilrpGPyicaEw~ 130 (872)
.++.-+..|+.+++.|+|+|-+- |.+..-.|..-+..-. . ..|+.++++.++++||++|.|+=-+--..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l- 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL- 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHH-
Confidence 34567889999999999998753 3343333332222111 1 269999999999999999999632210000
Q ss_pred CCCCCcccccCC-CeeeecCC-----hhhHHHHHHHHHHHHHHHHhcc
Q 002867 131 FGGFPVWLKYIP-GINFRTEN-----GPFKAEMHKFTKKIVDMMKAER 172 (872)
Q Consensus 131 ~GGlP~WL~~~p-~~~~Rt~d-----p~y~~~~~~~~~~l~~~i~~~~ 172 (872)
..--|.|-.+.. +-..|..+ .+|.+++.+|.-.|++.++..+
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 011455654321 11122111 2588999999999999999554
No 75
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.80 E-value=17 Score=39.40 Aligned_cols=125 Identities=16% Similarity=0.260 Sum_probs=73.9
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE-EecCcccceecCCCCCCcccccC
Q 002867 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFPVWLKYI 141 (872)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vi-lrpGPyicaEw~~GGlP~WL~~~ 141 (872)
.|++.++.++++|+..|+..+. ..++ ....++++ ..+++++-++++++||.|. +..+.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 5999999999999999998532 1111 11123333 2468999999999999875 332210 0010
Q ss_pred CCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCC-------CCHHHHHHHHHHHHh
Q 002867 142 PGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGA-------PGRSYTRWAAKMAVG 214 (872)
Q Consensus 142 p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg~~~~~~~~-------~~~~y~~~l~~~~~~ 214 (872)
+-+.|+.-++.....+++.++..+ .+ |.++|.+. |. ...++. .-.+.++.|.+++++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~-~~~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GY-DVYYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Cc-cccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 113456666777777777777777 33 56666542 11 000111 113456777777777
Q ss_pred cCCCc
Q 002867 215 LGTGV 219 (872)
Q Consensus 215 ~gi~v 219 (872)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 78754
No 76
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=74.38 E-value=50 Score=35.24 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 002867 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (872)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vil 119 (872)
.+++.+++++++|++.|+...++ + .++.++.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~----------~----~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY----------D----WDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----------c----CCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999985322 1 2588899999999999864
No 77
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=73.95 E-value=5.7 Score=47.92 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCcc-----CCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 002867 66 DLIQKAKDGGLDVIQT-YVF-------WNGH-----EPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 66 ~~l~k~ka~GlN~V~t-yv~-------Wn~h-----Ep~~G~ydf~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
++|.-+|++|+|+|.. +|+ |.+. .+.+ .|.+..+|.+||+.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688999999999996 442 3221 1111 24456799999999999999999974
No 78
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=73.58 E-value=31 Score=39.18 Aligned_cols=135 Identities=17% Similarity=0.241 Sum_probs=86.7
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHH---HcCCEEEEecCcccceecCCCCC-
Q 002867 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAK---QAGLYVNLRIGPYVCAEWNFGGF- 134 (872)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~---~~GL~VilrpGPyicaEw~~GGl- 134 (872)
..|+..+.-++.+|+.|++.--.|-.|. .|.+-|++-++..- +.+|..-|. |.+.--
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w~ 115 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC--------WANENWT 115 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE--------ECCChhh
Confidence 4677888999999999999998887774 46667777776553 334544443 332210
Q ss_pred CcccccCCCeeeecCChhhH--HHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCCCCHHHHHHHHHHH
Q 002867 135 PVWLKYIPGINFRTENGPFK--AEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMA 212 (872)
Q Consensus 135 P~WL~~~p~~~~Rt~dp~y~--~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg~~~~~~~~~~~~y~~~l~~~~ 212 (872)
=.|-....++.+- ..|. +..++.++.|++.+++..+.--+|-||+++=--.+. ++-++.++.+++.+
T Consensus 116 ~~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a 184 (345)
T PF14307_consen 116 RRWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEA 184 (345)
T ss_pred hccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHH
Confidence 1222222222121 1221 224677788888888777766789999987322111 24578999999999
Q ss_pred HhcCCCcceEe
Q 002867 213 VGLGTGVPWIM 223 (872)
Q Consensus 213 ~~~gi~vp~~~ 223 (872)
+++|+..+.+.
T Consensus 185 ~~~G~~giyii 195 (345)
T PF14307_consen 185 KEAGLPGIYII 195 (345)
T ss_pred HHcCCCceEEE
Confidence 99999876554
No 79
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=73.44 E-value=49 Score=35.55 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=37.9
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 002867 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (872)
Q Consensus 54 ~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vil 119 (872)
+.|-+.+ ++++|++++++|++.|+.. . + + ..+++++.++++++||.+..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~---~---~----~----~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFM---F---P----Y----DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEc---C---C----C----CCCHHHHHHHHHHcCCcEEE
Confidence 4454444 7889999999999999983 2 1 1 13799999999999999854
No 80
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=73.01 E-value=6.6 Score=39.54 Aligned_cols=16 Identities=50% Similarity=0.717 Sum_probs=14.9
Q ss_pred CCCC--CCceeEEEEEEe
Q 002867 856 DPCP--SIMKQLAVEAIC 871 (872)
Q Consensus 856 DPC~--gt~KyL~v~y~C 871 (872)
|||| |..|.|.|.|..
T Consensus 116 DP~p~~ge~K~L~V~Y~f 133 (151)
T PF11875_consen 116 DPCPFLGEPKQLRVRYRF 133 (151)
T ss_pred CCccccCCccEEEEEEEE
Confidence 9999 999999999974
No 81
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=72.29 E-value=54 Score=35.55 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.3
Q ss_pred cccHHHHHHHHHHCCCCEEEEccc
Q 002867 61 PEMWPDLIQKAKDGGLDVIQTYVF 84 (872)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~tyv~ 84 (872)
.-.|+++|.-+|++||+.|+.-|-
T Consensus 17 ~~sW~erl~~AK~~GFDFvEmSvD 40 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEMSVD 40 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEEecc
Confidence 456999999999999999998764
No 82
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=71.80 E-value=3.6 Score=42.01 Aligned_cols=63 Identities=25% Similarity=0.195 Sum_probs=29.0
Q ss_pred CCceEEEEECCeeccccccccccCCCCCcccccCccccccccCCCCCCceeeeecCccccccCCceEEEEEecC
Q 002867 673 SMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWG 746 (872)
Q Consensus 673 g~gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~~G~~~~~~~~~~~g~PQqtlY~VP~~~Lk~g~N~IvvfEe~g 746 (872)
.-++=+|.||| ..+..+...... ++|.+++ -+-.|..+.--|.||+..|++|.|+|.+--..|
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~~---d~~~~r~-------g~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFGN---DNAIYRS-------GIHRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE--------------S--GGG-------T---S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccccCC---CCceeeC-------ceecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 34677999999 777766311111 2344443 122244555567899999999999997644333
No 83
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=70.82 E-value=53 Score=37.98 Aligned_cols=91 Identities=11% Similarity=0.116 Sum_probs=54.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc----ccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE-ecCcccceecCCCCC
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTY----VFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL-RIGPYVCAEWNFGGF 134 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~ty----v~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vil-rpGPyicaEw~~GGl 134 (872)
++....+++++++++|+..|+.. ++|..-+.+ -..+++++-++++++||.|.. -++-+.+..+..|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g-- 100 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG-- 100 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEEEeeccccCCccccCC--
Confidence 44567799999999999999964 222111000 023578899999999999753 3321111111111
Q ss_pred CcccccCCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 135 PVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 135 P~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
.+=+.|+..+++.-+.+++.++.-+
T Consensus 101 ----------~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 101 ----------GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ----------CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1334577777666666666666555
No 84
>PRK09989 hypothetical protein; Provisional
Probab=69.96 E-value=33 Score=36.82 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 002867 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (872)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vil 119 (872)
-.+++|++++++|+..|++..+|. + +.+++.++.+++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~----------~----~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD----------Y----STLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc----------C----CHHHHHHHHHHcCCcEEE
Confidence 478999999999999999844332 2 367788889999999874
No 85
>PLN02960 alpha-amylase
Probab=69.77 E-value=1.3e+02 Score=38.68 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEec
Q 002867 65 PDLIQKAKDGGLDVIQT-YVF-------WNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 65 ~~~l~k~ka~GlN~V~t-yv~-------Wn~hEp~--~G~ydf~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
++.|.-+|++|+|+|+. .|+ |.+.-.- .=.-.|....+|.+||+.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34688999999999996 453 4321100 000123445799999999999999999974
No 86
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=69.43 E-value=7 Score=42.39 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=39.7
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 002867 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (872)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpG 122 (872)
+...++.|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|++|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 778899999999999999998 34555554 34778999999999999999887
No 87
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=69.00 E-value=43 Score=38.97 Aligned_cols=90 Identities=18% Similarity=0.253 Sum_probs=59.5
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCC----ceeeeccc---hhHHHHHHHHHHcCCEEEEecCcccc
Q 002867 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP----GKYYFEGN---YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (872)
Q Consensus 54 ~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~----G~ydf~g~---~dl~~fl~la~~~GL~VilrpGPyic 126 (872)
-+|+.+..+.-.+.+++++++|++.+.+=--|....... |.|-.+-. .-|..+++.+++.||+.=|+..|-+.
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 356778888889999999999999887776787542222 33322211 13999999999999999998888776
Q ss_pred eecC--CCCCCcccccCCC
Q 002867 127 AEWN--FGGFPVWLKYIPG 143 (872)
Q Consensus 127 aEw~--~GGlP~WL~~~p~ 143 (872)
+.-. +-..|.|++..++
T Consensus 130 ~~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTT
T ss_pred cchhHHHHhCccceeecCC
Confidence 5211 2347999987554
No 88
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=68.61 E-value=8.9 Score=42.56 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=49.4
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCccCCC-Cceeeeccc--hhHHHHHHHHHHcCCEEEEecCcccce
Q 002867 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (872)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~-~G~ydf~g~--~dl~~fl~la~~~GL~VilrpGPyica 127 (872)
...+..++.++++|+.||.+=...+-..++... -+.|.|+-. -|..++++..+++|++|++..=|+|+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 367778999999999997654444433333322 135666532 389999999999999999988888754
No 89
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=68.16 E-value=21 Score=39.24 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=61.3
Q ss_pred eeEEEccCcEEECCeEeEEEEE--EeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeec--cchhHHHH
Q 002867 31 GSVSYDSKAIAINGKRRILISG--SIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE--GNYDLVKF 106 (872)
Q Consensus 31 ~~v~~d~~~~~idG~p~~~~sG--~~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~--g~~dl~~f 106 (872)
..|.+. .+.+.+.+++++.| ++| .++.-.+.-+++|++|+..++.|.+=+--. -+.|. |...+..+
T Consensus 14 ~~~~~~--~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l 83 (266)
T PRK13398 14 TIVKVG--DVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKIL 83 (266)
T ss_pred cEEEEC--CEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHH
Confidence 345553 37777778999988 344 577778889999999999999998874333 33565 56789999
Q ss_pred HHHHHHcCCEEEEec
Q 002867 107 IKLAKQAGLYVNLRI 121 (872)
Q Consensus 107 l~la~~~GL~Vilrp 121 (872)
-+.|++.||.++-.|
T Consensus 84 ~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 84 KEVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHHcCCCEEEee
Confidence 999999999887664
No 90
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=66.65 E-value=9.9 Score=46.46 Aligned_cols=55 Identities=24% Similarity=0.383 Sum_probs=37.6
Q ss_pred HHHHHHHHCCCCEEEE-ccc---------------CCccC-----CCCceee----ec--cchhHHHHHHHHHHcCCEEE
Q 002867 66 DLIQKAKDGGLDVIQT-YVF---------------WNGHE-----PSPGKYY----FE--GNYDLVKFIKLAKQAGLYVN 118 (872)
Q Consensus 66 ~~l~k~ka~GlN~V~t-yv~---------------Wn~hE-----p~~G~yd----f~--g~~dl~~fl~la~~~GL~Vi 118 (872)
+.|.-+|++|+|+|+. +|+ |.+.- |+ +.|- +- ...+|.+||+.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999996 443 32221 10 1111 10 13689999999999999999
Q ss_pred Eec
Q 002867 119 LRI 121 (872)
Q Consensus 119 lrp 121 (872)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 974
No 91
>PRK12313 glycogen branching enzyme; Provisional
Probab=66.57 E-value=11 Score=46.37 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=37.6
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCccCC--CCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 002867 68 IQKAKDGGLDVIQT-YVF-------WNGHEP--SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 68 l~k~ka~GlN~V~t-yv~-------Wn~hEp--~~G~ydf~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
|.-+|++|+|+|.. +|+ |.+.-. ..=.-.|.+..||.+||+.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999995 453 321100 0000135556799999999999999999974
No 92
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=66.04 E-value=9.5 Score=46.02 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHCCCCEEEE-cccCCccCCCCceee----------eccchhHHHHHHHHHHcCCEEEEec
Q 002867 63 MWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYY----------FEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~t-yv~Wn~hEp~~G~yd----------f~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
-+.+.|.-+|++|+|+|-+ .++-+-.. ..-|+ |....+|.++++.|+++||+|||-.
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3667889999999999986 45432110 01222 4456799999999999999999874
No 93
>PRK10785 maltodextrin glucosidase; Provisional
Probab=65.98 E-value=11 Score=45.97 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCCEEEE-cccCC--ccCCCCcee-----eeccchhHHHHHHHHHHcCCEEEEec
Q 002867 65 PDLIQKAKDGGLDVIQT-YVFWN--GHEPSPGKY-----YFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 65 ~~~l~k~ka~GlN~V~t-yv~Wn--~hEp~~G~y-----df~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
.+.|.-+|++|+|+|-. +||=+ .|---..-| .|.+..||.++++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 56788899999999996 56632 121111111 14456799999999999999999874
No 94
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=65.31 E-value=92 Score=33.53 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=60.5
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCccCCCCce-eeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccccCC
Q 002867 64 WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGK-YYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIP 142 (872)
Q Consensus 64 W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~-ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p 142 (872)
-.+.|+.+.++|++.|+.. ..+|..-. -+++ ..+++++.++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 4478999999999999984 33332210 0222 236899999999999986542 3331
Q ss_pred CeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 002867 143 GINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ 185 (872)
Q Consensus 143 ~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQ 185 (872)
+.+.+.|+..+++..+++++.++..+ .+ |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345677788877788888887776 33 55565553
No 95
>PRK09505 malS alpha-amylase; Reviewed
Probab=65.24 E-value=12 Score=46.42 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=42.4
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCccCCC----Cc------------------eeeeccchhHHHHHHHHHHcCCEEEEe
Q 002867 64 WPDLIQKAKDGGLDVIQT-YVFWNGHEPS----PG------------------KYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (872)
Q Consensus 64 W~~~l~k~ka~GlN~V~t-yv~Wn~hEp~----~G------------------~ydf~g~~dl~~fl~la~~~GL~Vilr 120 (872)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....+|+++|+.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567889999999999985 5654443321 11 012445679999999999999999987
Q ss_pred c
Q 002867 121 I 121 (872)
Q Consensus 121 p 121 (872)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 96
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=64.57 E-value=25 Score=43.58 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=66.2
Q ss_pred ccHHHHHHHHHHCCCCEEE---------------EcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccc
Q 002867 62 EMWPDLIQKAKDGGLDVIQ---------------TYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVC 126 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~---------------tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyic 126 (872)
+.-...|+.+|++|+|||- .|++| -|= ||+-|.= .-| ...++.+.|+.|..|..||-.
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~l--p~r~d~f--~~~--aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLL--PMRADLF--NRV--AWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccc--ccccCCc--CHH--HHHHHHhhCCEEEEeccceee
Confidence 4567889999999999996 45567 332 3333311 012 344588999999999999853
Q ss_pred e---------ecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc
Q 002867 127 A---------EWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENE 189 (872)
Q Consensus 127 a---------Ew~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENE 189 (872)
. +++..+-|.... |+-..| =.+|..++++|++.|.+-|+.+ .+|=++|...+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd 467 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDD 467 (671)
T ss_pred ccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEeccc
Confidence 2 222122221111 100112 2347788999999999999843 24556665544
No 97
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=64.43 E-value=12 Score=45.43 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=48.2
Q ss_pred cccHHHHHHHHHHCCCCEEEEc-ccCCccCCCCcee--------eeccc----hhHHHHHHHHHHcCCEEEEecCcccce
Q 002867 61 PEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPSPGKY--------YFEGN----YDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (872)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~ty-v~Wn~hEp~~G~y--------df~g~----~dl~~fl~la~~~GL~VilrpGPyica 127 (872)
++.=++.|..|+...||.|+.| ..|.+|.|-|+.= |+.++ .-+..+|+.|++.|+.++.=--=|-.-
T Consensus 117 ~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~ 196 (559)
T PF13199_consen 117 AEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAAN 196 (559)
T ss_dssp HHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEE
T ss_pred chhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccc
Confidence 3466789999999999999999 7899999987533 23332 368899999999999987532222111
Q ss_pred ec--CCCCCCcccc
Q 002867 128 EW--NFGGFPVWLK 139 (872)
Q Consensus 128 Ew--~~GGlP~WL~ 139 (872)
+. ..|=.|.|.+
T Consensus 197 ~~~~~~gv~~eW~l 210 (559)
T PF13199_consen 197 NNYEEDGVSPEWGL 210 (559)
T ss_dssp TT--S--SS-GGBE
T ss_pred cCcccccCCchhhh
Confidence 21 2566788975
No 98
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=64.30 E-value=1.8 Score=52.22 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=53.0
Q ss_pred ecCCCCeEEEEeeecCCCCCCCCCCccCCceecCChHHHHHhhcCCCCCceEEecCCCCC
Q 002867 795 MCGPGQKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFG 854 (872)
Q Consensus 795 ~C~~G~~I~~I~~A~YGr~~~~C~~~~~~~C~~~~sl~~V~~~C~Gk~~C~v~a~~~~Fg 854 (872)
.|.++.++..|.+|.||..+++|+.+-..+|.++++...+.+.|..+..|++..-.+.++
T Consensus 331 ~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~ 390 (649)
T KOG0496|consen 331 YCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKT 390 (649)
T ss_pred hcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcc
Confidence 466788888899999999999999999999999999999999999999999998755543
No 99
>PLN00196 alpha-amylase; Provisional
Probab=63.24 E-value=41 Score=39.52 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=40.2
Q ss_pred HHHHHHHHHCCCCEEEEc-ccCCc--cCCCCc-eee-----eccchhHHHHHHHHHHcCCEEEEec
Q 002867 65 PDLIQKAKDGGLDVIQTY-VFWNG--HEPSPG-KYY-----FEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 65 ~~~l~k~ka~GlN~V~ty-v~Wn~--hEp~~G-~yd-----f~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
.+.|.-+|++|+++|-+. ++-+. |--.+. -|+ |....+|.++++.|+++||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467888999999999874 44221 222221 132 3334699999999999999999874
No 100
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=63.11 E-value=15 Score=44.48 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCccCCC-Cceee----------eccchhHHHHHHHHHHcCCEEEEec
Q 002867 64 WPDLIQKAKDGGLDVIQT-YVFWNGHEPS-PGKYY----------FEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 64 W~~~l~k~ka~GlN~V~t-yv~Wn~hEp~-~G~yd----------f~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
+.++|.-+|++|+++|-+ .|+-+ |. ..-|| |....||.++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 567899999999999986 45422 11 11222 3456799999999999999999874
No 101
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=62.76 E-value=26 Score=35.73 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=43.7
Q ss_pred ceEEecCcceEEEEEECCEEEEEEEcc--cC--CCe---eEEEeeeeccCCccEEEEEEeccCCc---cc---cCCCCcc
Q 002867 497 PVLTVMSAGHALHVFVNGQLAGTAYGS--LE--FPK---LTFTEGVNMRAGINKIALLSIAVGLP---NV---GPHFETW 563 (872)
Q Consensus 497 ~~L~v~~~~d~a~Vfvng~~vG~~~~~--~~--~~~---~~~~~~~~l~~g~~~L~ILven~Gr~---Ny---G~~~~~~ 563 (872)
..|.|...+ +..+||||+.||.-.-. .. ... .++.+.--|+.|.|+|.|++-+.... .+ .......
T Consensus 6 A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~~~~~~~~~~~~~~~~~ 84 (172)
T PF08531_consen 6 ARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWYNGRIGFGGFPRARYGG 84 (172)
T ss_dssp -EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S----------BTTB--
T ss_pred EEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCccccccccccccccccCC
Confidence 456665443 56899999999875411 11 111 23343333788999999999775543 11 0111124
Q ss_pred ccceeccEEE---ccccCCcccCccCCcEEE
Q 002867 564 NAGVLGPVTL---NGLNEGRRDLSWQKWTYK 591 (872)
Q Consensus 564 ~kGI~g~V~L---~g~~~~~~~L~~~~W~~~ 591 (872)
..++...+.| +|.. ...-++..|+..
T Consensus 85 ~~~l~~~l~i~~~DG~~--~~i~TD~sW~~~ 113 (172)
T PF08531_consen 85 RPALLAQLEITYADGTT--EVIVTDESWKCS 113 (172)
T ss_dssp --EEEEEEEE---TTEE--EE-E-STTSEEE
T ss_pred CceeEEEEEEEecCCCE--EEeccCCCeeee
Confidence 5666655556 4432 112344689976
No 102
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=62.19 E-value=14 Score=33.25 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=34.0
Q ss_pred ceEEecCcceEEEEEECCEEEEEEEcccCCCeeEEEeeeec-cCCccEEEEEEeccCCc
Q 002867 497 PVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNM-RAGINKIALLSIAVGLP 554 (872)
Q Consensus 497 ~~L~v~~~~d~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l-~~g~~~L~ILven~Gr~ 554 (872)
..|++.+-...++-||||+++|+..... .+.+ .+ ..|.++|.+ ++..|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCCC---eEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 3566555566999999999998764332 2222 23 678888877 7888864
No 103
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=61.60 E-value=15 Score=44.90 Aligned_cols=56 Identities=29% Similarity=0.364 Sum_probs=41.2
Q ss_pred cccHHHHHHHHHHCCCCEEEE-ccc-------CCccCCCCceee------eccchhHHHHHHHHHHcCCEEEEe
Q 002867 61 PEMWPDLIQKAKDGGLDVIQT-YVF-------WNGHEPSPGKYY------FEGNYDLVKFIKLAKQAGLYVNLR 120 (872)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~t-yv~-------Wn~hEp~~G~yd------f~g~~dl~~fl~la~~~GL~Vilr 120 (872)
.+.=.+.|.-+|+||+++||. .|. |.+ .|+.- |..-.||.+||+.|.++||-|||.
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGY----q~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPVAEHPGDRSWGY----QGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCC----CcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 344466888999999999996 332 544 12222 333469999999999999999996
No 104
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=61.55 E-value=40 Score=38.99 Aligned_cols=122 Identities=15% Similarity=0.119 Sum_probs=66.7
Q ss_pred CCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccccCCCe----eeecC-ChhhHHHHHHHHHHH
Q 002867 90 PSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGI----NFRTE-NGPFKAEMHKFTKKI 164 (872)
Q Consensus 90 p~~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~~----~~Rt~-dp~y~~~~~~~~~~l 164 (872)
+..|.|||+....=+.|++.|++.|...++-+ .=-.|.|+.+.-.. ...++ -+...++-..|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 56799999987777889999999999987753 12467888653210 00011 234567777888888
Q ss_pred HHHHHhcccccccCCceEeecccccccCc-------ccccC-CCCHHHHHHHHHHHHhcCCCcceEeeCC
Q 002867 165 VDMMKAERLFESQGGPIILSQIENEYGPM-------EYEIG-APGRSYTRWAAKMAVGLGTGVPWIMCKQ 226 (872)
Q Consensus 165 ~~~i~~~~~~~~~gGpII~vQiENEyg~~-------~~~~~-~~~~~y~~~l~~~~~~~gi~vp~~~~~~ 226 (872)
+++++.+.+ +|=-+--=||.... .+++. +.....++.|...+++.|+..-+..|+.
T Consensus 164 v~~~~~~GI------~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 164 VKHYKKWGI------NFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHCTT--------EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHhcCC------ccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 888874433 33334444887532 01111 1336778899999999999877666553
No 105
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=61.09 E-value=15 Score=43.70 Aligned_cols=113 Identities=13% Similarity=0.084 Sum_probs=82.5
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCC---CceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccc
Q 002867 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS---PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (872)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~---~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~ 139 (872)
.++++++.||++|++.-+.-|.|+-.=|. .+.-+-.|..--..+|+...++||...+-. -.=.+|.||.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--------fHwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--------FHWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--------ecCCCCHHHH
Confidence 47899999999999999999999987664 356788888888999999999999965532 0225798887
Q ss_pred c-CCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 002867 140 Y-IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ 185 (872)
Q Consensus 140 ~-~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQ 185 (872)
. ..+-.-+..=..|+++++--|++...++| .+..=|...|+.++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 6 33322222234588888888888888888 54333555555443
No 106
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=59.95 E-value=18 Score=43.51 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHCCCCEEEE-cccCCccCCCCceee----------eccchhHHHHHHHHHHcCCEEEEec
Q 002867 63 MWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYY----------FEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~t-yv~Wn~hEp~~G~yd----------f~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
-+.+.|.-+|++|+|+|-. +|+=+-. ....|| |....|+.++++.|+++||+|||-.
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~~~--~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQSPL--RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCCCC--CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4677899999999999986 4441100 011222 3456799999999999999999863
No 107
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=59.65 E-value=25 Score=30.41 Aligned_cols=24 Identities=13% Similarity=0.343 Sum_probs=20.9
Q ss_pred CcceEEEEEECCEEEEEEEcccCC
Q 002867 503 SAGHALHVFVNGQLAGTAYGSLEF 526 (872)
Q Consensus 503 ~~~d~a~Vfvng~~vG~~~~~~~~ 526 (872)
...|.|-||++++|+|++++....
T Consensus 25 k~~dsaEV~~g~EfiGvi~~Dede 48 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDE 48 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCC
Confidence 568999999999999999987544
No 108
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=59.15 E-value=17 Score=41.11 Aligned_cols=72 Identities=26% Similarity=0.318 Sum_probs=57.1
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCce-eeeccchhHHHHHHHHHHcCCEEEEecCccccee
Q 002867 50 ISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGK-YYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (872)
Q Consensus 50 ~sG~~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~-ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaE 128 (872)
++=++.+.|.+.+.=...|++|...|+.-| |=++|.|++.. --|. -+.++++.|+++||+||+..-|-|--|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~I----Ftsl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRI----FTSLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccce----eeecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 455677888888888889999999999555 44788887652 1222 788999999999999999998887665
No 109
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=58.92 E-value=31 Score=29.07 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=43.3
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 002867 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (872)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vil 119 (872)
|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4556788999999999999999732 333 58887765 5778999999999988754
No 110
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=58.13 E-value=19 Score=38.97 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=43.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpG 122 (872)
.....++.++..|+.||++|++ ..|..+++ ..+..++|+.++++||+|+--.|
T Consensus 69 ~q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 69 SKGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred HhhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEecccc
Confidence 3367788899999999999998 45666665 34788999999999999998776
No 111
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=57.29 E-value=42 Score=36.12 Aligned_cols=96 Identities=9% Similarity=0.007 Sum_probs=55.3
Q ss_pred Cceeeec-cchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 002867 92 PGKYYFE-GNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (872)
Q Consensus 92 ~G~ydf~-g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~ 170 (872)
.|...+. ...++..+++.|++.|++|++..| .|..+. +. . + ..++. .-+++.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sig-----g~~~~~---~~-~---~---~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLA-----GGSPPE---FT-A---A---LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEc-----CCCCCc---ch-h---h---hcCHH---HHHHHHHHHHHHHHH
Confidence 4666664 345789999999999999999886 122111 11 0 1 12333 335688888888886
Q ss_pred cccccccCCceEeecccccccCcccccCCCCHHHHHHHHHHHHhcC
Q 002867 171 ERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLG 216 (872)
Q Consensus 171 ~~~~~~~gGpII~vQiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 216 (872)
+++ =++.|+=|+.... ...-..+++.|++.+++.|
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 654 2456666765321 0111234555555554433
No 112
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=57.22 E-value=34 Score=39.66 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=42.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 002867 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
...+.|+++++.+|++||+....-+- ....+.. ..|...++.|++.|+++.|-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 37889999999999999999887543 1222332 378899999999999999875
No 113
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=56.95 E-value=32 Score=37.47 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=49.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCcee--eecc--chhHHHHHHHHHHcCCEEEEecCccc
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKY--YFEG--NYDLVKFIKLAKQAGLYVNLRIGPYV 125 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~y--df~g--~~dl~~fl~la~~~GL~VilrpGPyi 125 (872)
..+...+.++.+++.||..=...+-+.+.+. .+.| +|+. --|..++|+..+++|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 6677888999999999986555555544443 4556 5542 24899999999999999999988887
No 114
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=56.69 E-value=25 Score=39.10 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=52.6
Q ss_pred CCCCcccHHHHHHHHHHCCCC--EEEEcccCCccCCCCceeeecc--chhHHHHHHHHHHcCCEEEEecCcccce
Q 002867 57 PRSSPEMWPDLIQKAKDGGLD--VIQTYVFWNGHEPSPGKYYFEG--NYDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (872)
Q Consensus 57 ~R~~~~~W~~~l~k~ka~GlN--~V~tyv~Wn~hEp~~G~ydf~g--~~dl~~fl~la~~~GL~VilrpGPyica 127 (872)
...+.+.-++.++++++.|+. +|.+-..|. ..-|.|.|+- --|..++++..++.|+++++..=|+|..
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 456788889999999999964 555555563 3456666653 2489999999999999999988888864
No 115
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=56.63 E-value=4.3 Score=43.31 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=43.4
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 002867 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (872)
Q Consensus 65 ~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vilr 120 (872)
-...+.+.++|.+.|.+.++|....+..-.+... ++.++.+.|+++||.|||.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 5678899999999999999997765554344444 8999999999999999998
No 116
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=53.08 E-value=20 Score=47.38 Aligned_cols=56 Identities=27% Similarity=0.399 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCCEEEE-cccCCccCCC---Cc-----eee----------ec--cchhHHHHHHHHHHcCCEEEEec
Q 002867 66 DLIQKAKDGGLDVIQT-YVFWNGHEPS---PG-----KYY----------FE--GNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 66 ~~l~k~ka~GlN~V~t-yv~Wn~hEp~---~G-----~yd----------f~--g~~dl~~fl~la~~~GL~Vilrp 121 (872)
+.|.-+|++|+|+|+. +|+=+..|.. .| -|| |. ...++.++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999996 5653322211 11 022 23 56799999999999999999984
No 117
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=52.96 E-value=3.9e+02 Score=30.36 Aligned_cols=230 Identities=12% Similarity=0.101 Sum_probs=101.8
Q ss_pred HHHHHHHCCCCEEEE-------cccCCccCCCCceeeecc-chhHHHHHHHHHHcCCEEEEecCcccc-eecCCCCCCcc
Q 002867 67 LIQKAKDGGLDVIQT-------YVFWNGHEPSPGKYYFEG-NYDLVKFIKLAKQAGLYVNLRIGPYVC-AEWNFGGFPVW 137 (872)
Q Consensus 67 ~l~k~ka~GlN~V~t-------yv~Wn~hEp~~G~ydf~g-~~dl~~fl~la~~~GL~VilrpGPyic-aEw~~GGlP~W 137 (872)
-.+.+|++|+.-|-. +-.|.-.-..-..-+-.. +.-+.+|.+.|+++||++-+ |.. ++|.....+.-
T Consensus 96 W~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~----Y~S~~dw~~~~~~~~ 171 (346)
T PF01120_consen 96 WAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGL----YYSPWDWHHPDYPPD 171 (346)
T ss_dssp HHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEE----EEESSSCCCTTTTSS
T ss_pred HHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEE----EecchHhcCcccCCC
Confidence 478899999985542 222543222211111112 23567899999999998876 332 25544333222
Q ss_pred cccC-CCeeeecCChhhHHHHH-HHHHHHHHHHHhccc--ccccCCceEeecccccccCcccccCCCCHHHHHHHHHHHH
Q 002867 138 LKYI-PGINFRTENGPFKAEMH-KFTKKIVDMMKAERL--FESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAV 213 (872)
Q Consensus 138 L~~~-p~~~~Rt~dp~y~~~~~-~~~~~l~~~i~~~~~--~~~~gGpII~vQiENEyg~~~~~~~~~~~~y~~~l~~~~~ 213 (872)
.... .. .....+.+.+.++ .++.+|-+.+.+++. ++-+|+.-- .....-...+.++++
T Consensus 172 ~~~~~~~--~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~----------------~~~~~~~~~~~~~i~ 233 (346)
T PF01120_consen 172 EEGDENG--PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPD----------------PDEDWDSAELYNWIR 233 (346)
T ss_dssp CHCHHCC----HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSC----------------CCTHHHHHHHHHHHH
T ss_pred ccCCccc--ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCc----------------cccccCHHHHHHHHH
Confidence 2110 10 0112334444444 444555555553321 222322100 112222366777777
Q ss_pred hcCCCcceEeeCCCCCCCccccCCCCccc-ccCCCC-CCCCCceeee-cccccccccCCCCCCCChHHHHHHHHHHHHcC
Q 002867 214 GLGTGVPWIMCKQDDAPDPLINTCNGFYC-DYFSPN-KAYKPKMWTE-AWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKG 290 (872)
Q Consensus 214 ~~gi~vp~~~~~~~~~~~~~~~~~ng~~~-~~~~~~-~p~~P~~~~E-~~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g 290 (872)
+..-++.+....+....... .+.. +...+. ....|.-... .-.+||-. -.....++++++...+.+..++|
T Consensus 234 ~~qp~~ii~~r~~~~~~~~~-----d~~~~E~~~~~~~~~~pwE~~~ti~~~W~y~-~~~~~~ks~~~li~~l~~~vs~n 307 (346)
T PF01120_consen 234 KLQPDVIINNRWGGNEQGDG-----DYNTPERGIPGEIQGRPWETCTTIGPSWGYN-TPDEKYKSADELIDILVDSVSRN 307 (346)
T ss_dssp HHSTTSEEECCCSSCSSCCB-----SCCEECTTBTTTEEESEEEEEEESSSSSS-C-GGGCGS--HHHHHHHHHHHHTBT
T ss_pred HhCCeEEEecccCCCCCccc-----cccchhccCCCCCCCCCccccCcCCCCCccc-CCCCCcCCHHHHHHHHHHHhccC
Confidence 76555433222211110000 0000 111111 0111221111 12344430 11234467888888888888998
Q ss_pred Cee-eeeeeeecCCCCCCCCCCCcccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHhhcC
Q 002867 291 GSF-INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEP 350 (872)
Q Consensus 291 ~s~-~n~YM~hGGTNfG~~~G~~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~i~~~~~ 350 (872)
+++ +|. +.+.+|.+..+.-..||++...++....
T Consensus 308 gnlLLNi--------------------------gP~~dG~ip~~~~~~L~e~G~Wl~~nge 342 (346)
T PF01120_consen 308 GNLLLNI--------------------------GPDPDGTIPEEQVERLREIGDWLKVNGE 342 (346)
T ss_dssp EEEEEEE-----------------------------TTSS--HHHHHHHHHHHHHHHHHGG
T ss_pred ceEEEec--------------------------CCCCCCCcCHHHHHHHHHHHHHHHhccc
Confidence 875 332 2346777767778889999988876543
No 118
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=51.57 E-value=24 Score=39.53 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=49.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCc--eeeeccch--hHHHHHHHHHHcCCEEEEecCcccc
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPG--KYYFEGNY--DLVKFIKLAKQAGLYVNLRIGPYVC 126 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G--~ydf~g~~--dl~~fl~la~~~GL~VilrpGPyic 126 (872)
..+.-++.++++++.||.+=.+.+-|.+.. ..+ .|+|+-.+ |..++|+..+++|++|++..=|+|.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 566678899999999887655555554433 234 77776433 8999999999999999987767763
No 119
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=51.36 E-value=31 Score=43.69 Aligned_cols=65 Identities=17% Similarity=0.115 Sum_probs=45.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-cccCC----ccCCCCc-----eeeeccchhHHHHHHHHHHcCCEEEEecCcc
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQT-YVFWN----GHEPSPG-----KYYFEGNYDLVKFIKLAKQAGLYVNLRIGPY 124 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~t-yv~Wn----~hEp~~G-----~ydf~g~~dl~~fl~la~~~GL~VilrpGPy 124 (872)
+-+.|.+.|.-++++|+++|.+ +|+=+ .|--..- .-.|.+..++.+|++.|+++||.|||-.=|-
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpN 88 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPN 88 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4456889999999999999976 34311 1110000 1124577899999999999999999985433
No 120
>PLN02361 alpha-amylase
Probab=49.31 E-value=37 Score=39.61 Aligned_cols=57 Identities=12% Similarity=0.037 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCEEEEcccCC---ccCCCCc-eee----eccchhHHHHHHHHHHcCCEEEEec
Q 002867 65 PDLIQKAKDGGLDVIQTYVFWN---GHEPSPG-KYY----FEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 65 ~~~l~k~ka~GlN~V~tyv~Wn---~hEp~~G-~yd----f~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
.+.|.-++++|+++|-+.=+.. .|--.+. -|+ |....+|.++|+.|+++||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4567788999999998753322 1211122 122 3445799999999999999999874
No 121
>PRK09875 putative hydrolase; Provisional
Probab=48.72 E-value=1.2e+02 Score=33.96 Aligned_cols=89 Identities=10% Similarity=0.065 Sum_probs=58.5
Q ss_pred eEEEccCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHH
Q 002867 32 SVSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAK 111 (872)
Q Consensus 32 ~v~~d~~~~~idG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~ 111 (872)
.+++-+.+++++..++. +......-..+.-.+.|+.+|++|.+||-=--+.. -.||...+.++++
T Consensus 7 G~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g------------~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRY------------MGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEEecCCCc------------cCcCHHHHHHHHH
Confidence 45666777777663311 11111111344455678899999998873211111 2479999999999
Q ss_pred HcCCEEEEecCcccceecCCCCCCccccc
Q 002867 112 QAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (872)
Q Consensus 112 ~~GL~VilrpGPyicaEw~~GGlP~WL~~ 140 (872)
+-|+.||.-.|-|.-.. +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999886433 6888874
No 122
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=47.91 E-value=38 Score=37.74 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=46.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccc----CCccCC----------------CCceeeeccchhHHHHHHHHHHcCCEEE
Q 002867 59 SSPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP----------------SPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (872)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~tyv~----Wn~hEp----------------~~G~ydf~g~~dl~~fl~la~~~GL~Vi 118 (872)
.+.+..++.|+.|...++|+++.++- |.+--+ ..|.|.- .|+.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEE
Confidence 37888999999999999999999987 754311 1234443 499999999999999999
Q ss_pred Ee
Q 002867 119 LR 120 (872)
Q Consensus 119 lr 120 (872)
.-
T Consensus 90 PE 91 (303)
T cd02742 90 PE 91 (303)
T ss_pred Ee
Confidence 75
No 123
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=47.64 E-value=39 Score=43.12 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-ccCCccCCCCc------eee-------eccchhHHHHHHHHHHcCCEEEEecCccc
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPSPG------KYY-------FEGNYDLVKFIKLAKQAGLYVNLRIGPYV 125 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~ty-v~Wn~hEp~~G------~yd-------f~g~~dl~~fl~la~~~GL~VilrpGPyi 125 (872)
+-+.+.+.|.-++++|+|+|-.- ++ +..+| ..| |.+..++.+|++.|+++||.|||-.=|-=
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH 93 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNH 93 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 45568999999999999999863 33 11122 112 34678999999999999999999865444
Q ss_pred ce
Q 002867 126 CA 127 (872)
Q Consensus 126 ca 127 (872)
++
T Consensus 94 ~~ 95 (879)
T PRK14511 94 MA 95 (879)
T ss_pred cc
Confidence 33
No 124
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=47.59 E-value=84 Score=37.72 Aligned_cols=275 Identities=18% Similarity=0.295 Sum_probs=129.8
Q ss_pred eEeEEEEEEee------CCCCCcccHHHHHHHH---HHCCCCEEEEccc--------CCccCCCCceee---ecc-c---
Q 002867 45 KRRILISGSIH------YPRSSPEMWPDLIQKA---KDGGLDVIQTYVF--------WNGHEPSPGKYY---FEG-N--- 100 (872)
Q Consensus 45 ~p~~~~sG~~H------y~R~~~~~W~~~l~k~---ka~GlN~V~tyv~--------Wn~hEp~~G~yd---f~g-~--- 100 (872)
+.+.=++|++= ..+.+++.=++.|+.+ +-+|++.+|+.|- +.+-+ .|+-|+ |+- .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 55666888773 2334444333333332 3479999998875 22222 233222 221 1
Q ss_pred hhHHHHHHHHHHc--CCEEEEecCcccceecCCCCCCcccccCCCe----eeec-CChhhHHHHHHHHHHHHHHHHhccc
Q 002867 101 YDLVKFIKLAKQA--GLYVNLRIGPYVCAEWNFGGFPVWLKYIPGI----NFRT-ENGPFKAEMHKFTKKIVDMMKAERL 173 (872)
Q Consensus 101 ~dl~~fl~la~~~--GL~VilrpGPyicaEw~~GGlP~WL~~~p~~----~~Rt-~dp~y~~~~~~~~~~l~~~i~~~~~ 173 (872)
..+..+|+.|++. +|+++.-| | -.|.|+.....+ .++. .++.|.++...||.+-++.++++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------W---SpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~-- 220 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------W---SPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE-- 220 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT--
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------C---CCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC--
Confidence 1234678877664 57777766 4 479999764322 3442 34578888888888888888844
Q ss_pred ccccCCceEeecccccccCcc---cccC------CCCHHHHH-HHHHHHHhcCC--CcceEeeCCC--CCCC---ccccC
Q 002867 174 FESQGGPIILSQIENEYGPME---YEIG------APGRSYTR-WAAKMAVGLGT--GVPWIMCKQD--DAPD---PLINT 236 (872)
Q Consensus 174 ~~~~gGpII~vQiENEyg~~~---~~~~------~~~~~y~~-~l~~~~~~~gi--~vp~~~~~~~--~~~~---~~~~~ 236 (872)
|=+|-++-+.||..... ..|. +..++|++ .|.-.+++.|+ ++-++..+.. ..++ .++.-
T Consensus 221 ----GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 221 ----GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ----T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ----CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 45888999999986421 1122 12356665 48888888877 7777766531 1221 11110
Q ss_pred ------CC--Cccc--c-c-------CCCCCCCCCceeeecccccccccCCCCCC---CChHHHHHHHHHHHHcCCeeee
Q 002867 237 ------CN--GFYC--D-Y-------FSPNKAYKPKMWTEAWTGWYTEFGGPVPH---RPVEDLAFSVAKFIQKGGSFIN 295 (872)
Q Consensus 237 ------~n--g~~~--~-~-------~~~~~p~~P~~~~E~~~Gwf~~WG~~~~~---~~~~~~~~~~~~~l~~g~s~~n 295 (872)
.. +++| . . .....|++.++.||-..|.- .|+..... ..++..+..+..-+..+++ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 11 1222 1 1 11336888999999866531 12211111 1133444444444566644 2
Q ss_pred eeee------ecCCCCCCC-CCCCcccccCCCCCCCCcCCCCCchhHHHHHHHHHHHH
Q 002867 296 YYMY------HGGTNFGRT-AGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIK 346 (872)
Q Consensus 296 ~YM~------hGGTNfG~~-~G~~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~i~ 346 (872)
+-++ .||-|++.- ..++..+.. +. +|. .++|.|+.|..+.+|++
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~~--~~~p~yY~~gHfSKFV~ 424 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GEF--YKQPEYYAMGHFSKFVR 424 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEG-GG----TEE--EE-HHHHHHHHHHTTS-
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEc-CC----CeE--EEcHHHHHHHHHhcccC
Confidence 2222 588887532 112221111 11 111 23688998888766654
No 125
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.40 E-value=33 Score=38.49 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=48.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCC-----CCceeeeccc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-----SPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp-----~~G~ydf~g~--~dl~~fl~la~~~GL~VilrpGPyic 126 (872)
..+..++.++++++.||-+=.+.+-+.++.. .-|.|+|+-. -|..++|+..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 5667789999999999875555544333331 2356766533 38999999999999999998777775
No 126
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=47.39 E-value=20 Score=30.74 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=18.0
Q ss_pred eEEecCcceEEEEEECCEEEEE
Q 002867 498 VLTVMSAGHALHVFVNGQLAGT 519 (872)
Q Consensus 498 ~L~v~~~~d~a~Vfvng~~vG~ 519 (872)
.|.|.+.-..|.|||||+++|.
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~ 24 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGT 24 (71)
T ss_pred EEEEEEECCCCEEEECCEEecc
Confidence 4667776678899999999994
No 127
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=47.11 E-value=29 Score=43.27 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=37.1
Q ss_pred HHHHHHHCCCCEEEE-cccCCccC---CCCc-----eee----------e---ccchhHHHHHHHHHHcCCEEEEec
Q 002867 67 LIQKAKDGGLDVIQT-YVFWNGHE---PSPG-----KYY----------F---EGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 67 ~l~k~ka~GlN~V~t-yv~Wn~hE---p~~G-----~yd----------f---~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
.|.-+|++|+|+|+. +|+=...+ ...| -|| | ....+|.++|+.|+++||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999996 45411111 1111 111 1 124689999999999999999984
No 128
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=47.04 E-value=31 Score=39.09 Aligned_cols=74 Identities=11% Similarity=0.154 Sum_probs=54.7
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccc--hhH--HHHHHHHHHcCCEEEEecCcccc
Q 002867 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDL--VKFIKLAKQAGLYVNLRIGPYVC 126 (872)
Q Consensus 54 ~Hy~R~---~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~--~dl--~~fl~la~~~GL~VilrpGPyic 126 (872)
+|..|. +.+..++.++++++.||.+=.+.+-+.+++ ..+.|+|+.. -|. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 567788999999999998655554444333 2467777653 377 99999999999999998888887
Q ss_pred ee
Q 002867 127 AE 128 (872)
Q Consensus 127 aE 128 (872)
.+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 129
>PRK12677 xylose isomerase; Provisional
Probab=46.62 E-value=1.8e+02 Score=33.84 Aligned_cols=90 Identities=11% Similarity=0.101 Sum_probs=55.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeec---cchhHHHHHHHHHHcCCEEE-EecCcccceecCCCCCCcc
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE---GNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFPVW 137 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~---g~~dl~~fl~la~~~GL~Vi-lrpGPyicaEw~~GGlP~W 137 (872)
-.+++.+++++++|+..|+.. .+..--|+.+ -.+.+.++.+++++.||.|. +-|.-|.+..+..|
T Consensus 31 ~~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g----- 99 (384)
T PRK12677 31 LDPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG----- 99 (384)
T ss_pred CCHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC-----
Confidence 347899999999999999883 1111112221 12358999999999999976 44431111111111
Q ss_pred cccCCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 138 LKYIPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 138 L~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
.+-+.|+..++...+.+.+.++.-+
T Consensus 100 -------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 -------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred -------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2335577777776666666666655
No 130
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=46.45 E-value=63 Score=35.80 Aligned_cols=108 Identities=14% Similarity=0.198 Sum_probs=68.9
Q ss_pred EEEEEEeeCCCCCcc-cHH---HHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 002867 48 ILISGSIHYPRSSPE-MWP---DLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (872)
Q Consensus 48 ~~~sG~~Hy~R~~~~-~W~---~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpGP 123 (872)
+-+++..|+..-|.. ..+ ++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 567888887664322 222 3444444699999998554 4444 7899999999997775444554
Q ss_pred ccc---------eecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 124 YVC---------AEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 124 yic---------aEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
..+ +||..--+|.|+.+.=. ....++....+.--.+..++++.+.
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 433 57777778999976200 0123334556667777777888777
No 131
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=46.26 E-value=38 Score=46.05 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=45.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCce---ee----------eccchhHHHHHHHHHHcCCEEEEecCc
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGK---YY----------FEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~---yd----------f~g~~dl~~fl~la~~~GL~VilrpGP 123 (872)
+-+.|.+.|.-+|++|+|+|-.-=++ +..+|. || |.+..++.++++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 56679999999999999999863222 222221 22 456789999999999999999997544
No 132
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=46.07 E-value=1.6e+02 Score=31.46 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=31.4
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 002867 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (872)
Q Consensus 65 ~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vi 118 (872)
++.++.|+++|++++.+- |=| .|||. ..-|.+.++.+++.|+..+
T Consensus 63 ~~~~~~l~~~G~d~~~la---NNH-----~fD~G-~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 63 PENAAALKAAGFDVVSLA---NNH-----SLDYG-EEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred HHHHHHHHHhCCCEEEec---cCc-----ccccc-hHHHHHHHHHHHHCCCCEe
Confidence 356889999999999872 122 35553 3457788888888888654
No 133
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=44.92 E-value=34 Score=38.64 Aligned_cols=74 Identities=9% Similarity=0.024 Sum_probs=53.6
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCccccee
Q 002867 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (872)
Q Consensus 54 ~Hy~R~---~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~--~dl~~fl~la~~~GL~VilrpGPyicaE 128 (872)
+|..|. ..++-++.++++++.||.+=.+.+-+.+ ....+.|+|+-. -|..++++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 444553 5666788999999999876555444322 234566777643 3899999999999999999988888753
No 134
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=42.45 E-value=42 Score=34.69 Aligned_cols=88 Identities=20% Similarity=0.343 Sum_probs=56.3
Q ss_pred EEEeeCCCC-----CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeecc---chhHHHHHHHHHHcCCEEEEecC
Q 002867 51 SGSIHYPRS-----SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEG---NYDLVKFIKLAKQAGLYVNLRIG 122 (872)
Q Consensus 51 sG~~Hy~R~-----~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g---~~dl~~fl~la~~~GL~VilrpG 122 (872)
-|.+||+|. +.++.+.-++.++..++.. ...|-..|..++.+.-+. ...+.+|+++.+++|.++++-.+
T Consensus 55 ~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~ 131 (196)
T cd06416 55 TDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSS 131 (196)
T ss_pred cceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 388999865 3566777888888765532 122444554444432111 24788999999999999999888
Q ss_pred ccccee----c---CCCCCCcccccC
Q 002867 123 PYVCAE----W---NFGGFPVWLKYI 141 (872)
Q Consensus 123 PyicaE----w---~~GGlP~WL~~~ 141 (872)
++--.. . +....|.|+...
T Consensus 132 ~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 132 QYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred cchhccccCCCcCCCcCCCceEecCC
Confidence 752211 1 145688998763
No 135
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.19 E-value=50 Score=37.05 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=47.2
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCC---CCceeeeccc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 002867 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP---SPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (872)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp---~~G~ydf~g~--~dl~~fl~la~~~GL~VilrpGPyic 126 (872)
.+.-.+.++++++.+|-+=.+.+-+.+..- ....|+|.-. -|..++|+..+++|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 456678899999999976555543332221 1234666432 38999999999999999998888875
No 136
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=41.98 E-value=1.2e+02 Score=33.95 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=44.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCcc-CCC--CceeeeccchhHHHHHHHHHHcCCEEEEec
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVF----WNGH-EPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~----Wn~h-Ep~--~G~ydf~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
+.+.-++.++.|...|+|.+..|+- +.-+ |-. +|.|.- .++.++++.|++.||.||.-+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecC
Confidence 4577889999999999999998753 3222 111 344433 499999999999999999754
No 137
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=41.56 E-value=42 Score=37.65 Aligned_cols=72 Identities=10% Similarity=0.102 Sum_probs=51.6
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 002867 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (872)
Q Consensus 54 ~Hy~R~---~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~--~dl~~fl~la~~~GL~VilrpGPyic 126 (872)
+|..|. ..+..++.++++++.+|-.=.+.+-+.+.. ..+.|+|+.. -|..+|++..+++|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 454554 566788999999999987554444332222 3466777543 38999999999999999988777775
No 138
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=41.51 E-value=1.1e+02 Score=32.65 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=64.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeec-cchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCccc
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE-GNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWL 138 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~-g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL 138 (872)
.+..++..++.++++|+.++-+|..... ....|..+ |..|-..-+++|+++|+. + |-|.++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gs~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----P-----------GTIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 6788999999999999999999988765 23334443 778999999999999982 2 233333
Q ss_pred ccCCCeeeecCChhhHHHHHHHHHHHHHHHHhc
Q 002867 139 KYIPGINFRTENGPFKAEMHKFTKKIVDMMKAE 171 (872)
Q Consensus 139 ~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~ 171 (872)
--+.+. .+..+...+..||+.+.+.|+..
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 322221 23337788899999999988844
No 139
>PRK03705 glycogen debranching enzyme; Provisional
Probab=41.25 E-value=43 Score=41.51 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=37.0
Q ss_pred HHHHHHHCCCCEEEE-cccCCccCCCC---c-----eee----------ecc-----chhHHHHHHHHHHcCCEEEEec
Q 002867 67 LIQKAKDGGLDVIQT-YVFWNGHEPSP---G-----KYY----------FEG-----NYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 67 ~l~k~ka~GlN~V~t-yv~Wn~hEp~~---G-----~yd----------f~g-----~~dl~~fl~la~~~GL~Vilrp 121 (872)
.|.-+|++|+|+|+. +|+=...++.. | -|| |.. ..++.++|+.|+++||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999996 45422112110 1 011 221 2589999999999999999984
No 140
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=40.92 E-value=44 Score=43.81 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 002867 101 YDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 101 ~dl~~fl~la~~~GL~Vilrp 121 (872)
.+|.++|+.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 689999999999999999984
No 141
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=40.90 E-value=27 Score=39.11 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCE--EE-Eec
Q 002867 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLY--VN-LRI 121 (872)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~--Vi-lrp 121 (872)
.|++.+.+++..|+ +|+..-+--..|..|+.|. |+.+.+++|...||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 6788888899999999997 999999999999996 34 676
No 142
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=40.87 E-value=38 Score=37.00 Aligned_cols=81 Identities=6% Similarity=-0.169 Sum_probs=54.9
Q ss_pred CceEEecCCCCeEEEEeeecCCCCC---CCCCC----ccCCceecCChHHHHHhhcCCCCCceEEecCCCCCCCCC-CCC
Q 002867 790 PKAHLMCGPGQKIKSIKFASFGTPE---GVCGS----YRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPC-PSI 861 (872)
Q Consensus 790 ~~~~L~C~~G~~I~~I~~A~YGr~~---~~C~~----~~~~~C~~~~sl~~V~~~C~Gk~~C~v~a~~~~Fg~DPC-~gt 861 (872)
+.+...|++...+ .+..+.+++.+ .+|.. ...-.|.....+..+...|.+|+.|++..++.-++ -+| ++-
T Consensus 143 ~~~~~~~~~~~~~-~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~ 220 (265)
T KOG4729|consen 143 SPTDPPRSEIRLE-CREGRRLAVYSAVMKTSPQKDPETEIRHECVSSVLPQLLRQCHAKEGCTLKSDGIKGH-CRHGHLH 220 (265)
T ss_pred CCCCCccCcccch-hhhcccccccccccccCCCCcccCCCCceeecccchhhhhcccccCCceeecCCcccc-cccccee
Confidence 3444555555333 56666677732 35542 12334555566788899999999999999988887 677 567
Q ss_pred ceeEEEEEEeC
Q 002867 862 MKQLAVEAICG 872 (872)
Q Consensus 862 ~KyL~v~y~C~ 872 (872)
.+|+.|.+.|.
T Consensus 221 ~~~~~~n~e~~ 231 (265)
T KOG4729|consen 221 KVYVTVTEEIF 231 (265)
T ss_pred EEEEEeccccc
Confidence 78999888763
No 143
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=40.79 E-value=91 Score=35.57 Aligned_cols=81 Identities=21% Similarity=0.378 Sum_probs=59.0
Q ss_pred eEEEccCcEEECCeEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeecc--chhHHHHHH
Q 002867 32 SVSYDSKAIAINGKRRILISGSIHYPRS-SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEG--NYDLVKFIK 108 (872)
Q Consensus 32 ~v~~d~~~~~idG~p~~~~sG~~Hy~R~-~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g--~~dl~~fl~ 108 (872)
.|.+. .+.+.|.+++++.| +=-+ +++.-.+.-+.+|++|.+.++.|+|- |+---|.|.| ..-|.-+.+
T Consensus 81 ~v~~~--~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~ 151 (335)
T PRK08673 81 VVKVG--DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAE 151 (335)
T ss_pred EEEEC--CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHH
Confidence 35553 36777788888888 2222 56667777888889999999999985 4444477776 566777777
Q ss_pred HHHHcCCEEEEec
Q 002867 109 LAKQAGLYVNLRI 121 (872)
Q Consensus 109 la~~~GL~Vilrp 121 (872)
.|++.||.++-.+
T Consensus 152 ~~~~~Gl~v~tev 164 (335)
T PRK08673 152 AREETGLPIVTEV 164 (335)
T ss_pred HHHHcCCcEEEee
Confidence 8899999887754
No 144
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=40.15 E-value=30 Score=35.24 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=18.4
Q ss_pred EEEeCCCceEEEEECCeeccccc
Q 002867 668 ALDMGSMGKGQVWVNGQSIGRHW 690 (872)
Q Consensus 668 ~Ld~~g~gKG~vwVNG~nlGRYW 690 (872)
.|..++.|+=.+||||+.+|+--
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~ 29 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGP 29 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE-
T ss_pred EEEEEeCeeEEEEECCEEeeCCc
Confidence 46677778889999999999754
No 145
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=39.82 E-value=38 Score=37.22 Aligned_cols=50 Identities=32% Similarity=0.310 Sum_probs=37.8
Q ss_pred CCCcceEEEEEEecCCCCCccccCCCcceEEecCcceEEEEEECCEEEEEE
Q 002867 470 RDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTA 520 (872)
Q Consensus 470 ~d~~GyllYrt~i~~~~~~~~~~~~~~~~L~v~~~~d~a~Vfvng~~vG~~ 520 (872)
+|.+|.+||+.++....+. ....+....|++.+.|-.|.|||||.-+=..
T Consensus 84 rdfv~~~wyer~v~vpe~w-~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h 133 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESW-TQDLGKRVVLRIGSAHSYAIVWVNGVDALEH 133 (297)
T ss_pred ccceeeeEEEEEEEcchhh-hhhcCCeEEEEeecccceeEEEEcceeeccc
Confidence 5689999999999776432 1223455789999999999999999865443
No 146
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=39.29 E-value=49 Score=37.37 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=51.6
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCcccce
Q 002867 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (872)
Q Consensus 54 ~Hy~R~---~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~--~dl~~fl~la~~~GL~VilrpGPyica 127 (872)
+|..|. +.+..++.++++++.||-+=.+.+-+.+.. .-+.|+|+-. -|..++++..+++|+++++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455553 566778999999999987544443333322 3455666543 378999999999999999988778753
No 147
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.95 E-value=59 Score=35.99 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=49.8
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCccCC--------CCceeeeccc--hhHHHHHHHHHHcCCEEEEe
Q 002867 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP--------SPGKYYFEGN--YDLVKFIKLAKQAGLYVNLR 120 (872)
Q Consensus 54 ~Hy~R~---~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp--------~~G~ydf~g~--~dl~~fl~la~~~GL~Vilr 120 (872)
+|..|. +.+.-++.++++|+.||-+=.+++-..+|.- .-+.|+|+-. -|..++++..++.|++|++.
T Consensus 14 ~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~ 93 (292)
T cd06595 14 NWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLN 93 (292)
T ss_pred hHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEE
Confidence 444452 6677889999999999976555544333321 2356777643 49999999999999999987
Q ss_pred cCcc
Q 002867 121 IGPY 124 (872)
Q Consensus 121 pGPy 124 (872)
.=|+
T Consensus 94 v~P~ 97 (292)
T cd06595 94 LHPA 97 (292)
T ss_pred eCCC
Confidence 6444
No 148
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=38.46 E-value=1.5e+02 Score=33.73 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=54.8
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 002867 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (872)
Q Consensus 54 ~Hy~R~---~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~--~dl~~fl~la~~~GL~VilrpGPyic 126 (872)
+|..|. ..++.++..+++++.+|-.=.+++-|.+++ .-+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 555554 677788999999999987655555555443 3466777643 38899999999999999988888887
No 149
>PRK14565 triosephosphate isomerase; Provisional
Probab=36.44 E-value=1e+02 Score=33.42 Aligned_cols=87 Identities=17% Similarity=0.191 Sum_probs=56.4
Q ss_pred HHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCC-------------
Q 002867 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGG------------- 133 (872)
Q Consensus 67 ~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GG------------- 133 (872)
...++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|=..- |-+.|-
T Consensus 77 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiGE~~e-~r~~~~~~~~~~~Ql~~~l 149 (237)
T PRK14565 77 SAKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVGETLE-DRENGMTKDVLLEQCSNCL 149 (237)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcCCCHH-HHHccChHHHHHHHHHHHh
Confidence 356899999988877 455555555422 223333448999999999999984321 112222
Q ss_pred -------C---CcccccCCCeeeecCChhhHHHHHHHHHHH
Q 002867 134 -------F---PVWLKYIPGINFRTENGPFKAEMHKFTKKI 164 (872)
Q Consensus 134 -------l---P~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l 164 (872)
+ |.|.... + ++.+|.+.+++.++++++
T Consensus 150 ~~~~~ivIAYEPvWAIGt-G---~~a~~e~i~~~~~~Ir~~ 186 (237)
T PRK14565 150 PKHGEFIIAYEPVWAIGG-S---TIPSNDAIAEAFEIIRSY 186 (237)
T ss_pred cCCCCEEEEECCHHHhCC-C---CCCCHHHHHHHHHHHHHh
Confidence 1 6776642 2 367888988888887775
No 150
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=36.34 E-value=1.3e+02 Score=32.01 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=71.8
Q ss_pred cccHHHHHHHHHHCCCCE-EEE--cccCCccCC---CCc--eeee-----------cc--chhHHHHHHHHHHcCCEEEE
Q 002867 61 PEMWPDLIQKAKDGGLDV-IQT--YVFWNGHEP---SPG--KYYF-----------EG--NYDLVKFIKLAKQAGLYVNL 119 (872)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~-V~t--yv~Wn~hEp---~~G--~ydf-----------~g--~~dl~~fl~la~~~GL~Vil 119 (872)
++.-.+.++++|+.|+.+ |+| |++|...+. .=. -+|+ +| +..+-+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 455678899999999874 444 445422221 111 2233 22 23555677888888998888
Q ss_pred ecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEee----cccccccCccc
Q 002867 120 RIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILS----QIENEYGPMEY 195 (872)
Q Consensus 120 rpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~v----QiENEyg~~~~ 195 (872)
|. |. .|++ ++++.-++++.+|++.+. +. ++..-.=+| .+. |+.=+|-..
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~--~~~llpyh~-~g~~Ky~~lg~~y~~~-- 185 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK--QIHLLPFHQ-YGEPKYRLLGKTWSMK-- 185 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc--eEEEecCCc-cchhHHHHcCCcCccC--
Confidence 85 22 3553 345666666666665541 11 110000000 000 000022111
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCcc
Q 002867 196 EIGAPGRSYTRWAAKMAVGLGTGVP 220 (872)
Q Consensus 196 ~~~~~~~~y~~~l~~~~~~~gi~vp 220 (872)
.......+.|+++++.+++.|+.+-
T Consensus 186 ~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 186 EVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 1234678999999999999998763
No 151
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.10 E-value=1.1e+02 Score=30.50 Aligned_cols=47 Identities=28% Similarity=0.353 Sum_probs=35.6
Q ss_pred HHHHHHHCCCCEEEEcccCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEE
Q 002867 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNL 119 (872)
Q Consensus 67 ~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~--~dl~~fl~la~~~GL~Vil 119 (872)
.++.+.|.+-.||+|-.+|- .|.-.|+|. .+|-+.+. |+...+.|+.
T Consensus 39 t~qeLeal~~~T~ete~Pw~-----~gn~rf~Gvsls~Ll~~l~-ak~tslt~iA 87 (155)
T COG3915 39 TLQELEALPDETIETETPWT-----QGNTRFKGVSLSALLAWLG-AKQTSLTVIA 87 (155)
T ss_pred cHHHHhcCCcceEEEecCcc-----cCceeecceeHHHHHHHhh-ccCcceEEEE
Confidence 36678889999999999995 377788885 46666666 6666777764
No 152
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=35.80 E-value=65 Score=36.44 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=46.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCccCC------CCceee--------eccchhHHHHHHHHHHcCCEEEEe
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------SPGKYY--------FEGNYDLVKFIKLAKQAGLYVNLR 120 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~----Wn~hEp------~~G~yd--------f~g~~dl~~fl~la~~~GL~Vilr 120 (872)
+.+..++.|+.|...++|+...++- |.+.-+ ..|.+. |=-..|+.++++.|++.|+.||.-
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 8888999999999999999998874 654321 123221 001359999999999999999975
No 153
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=35.71 E-value=49 Score=38.22 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=53.2
Q ss_pred EeeC-CCCCcccHHHHHHHHHHC-CCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 002867 53 SIHY-PRSSPEMWPDLIQKAKDG-GLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (872)
Q Consensus 53 ~~Hy-~R~~~~~W~~~l~k~ka~-GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vilr 120 (872)
|..| --.|...|+-+|.-+.++ -=||+..-| =|=+.|-=++|+-. .|.+.+++|+++||-||-.
T Consensus 173 EVR~ydlLPe~~weIDL~~veal~DENT~Aivv-iNP~NPcGnVys~~---HL~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 173 EVRYYDLLPEKDWEIDLDGVEALADENTVAIVV-INPNNPCGNVYSED---HLKKIAETAKKLGIMVIAD 238 (447)
T ss_pred eeEeecccCcccceechHHHHHhhccCeeEEEE-eCCCCCCcccccHH---HHHHHHHHHHHhCCeEEeh
Confidence 4444 346899999999999987 789998855 47788888899987 9999999999999998864
No 154
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=35.35 E-value=2e+02 Score=31.96 Aligned_cols=119 Identities=16% Similarity=0.077 Sum_probs=79.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccc
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~ 139 (872)
..+.-+.+|+.++.-+. .|++|- =| -.-|+.++.+|.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~-----------sD---Cn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG-----------SD---CNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee-----------cc---chhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 56778899999999887 999983 12 2368889999999999999863 333
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCCCCHHHHHHHHHHHHhcCCCc
Q 002867 140 YIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGV 219 (872)
Q Consensus 140 ~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~v 219 (872)
. ++ . ..+++ .++.++. +. ..--.|..|=|.||-=...+.-...-.+|+.-.|.+++++|.++
T Consensus 111 d--d~-------~--~~~~~---til~ay~--~~--~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 D--DI-------H--DAVEK---TILSAYL--PY--NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred c--ch-------h--hhHHH---HHHHHHh--cc--CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 11 1 12222 3444444 21 12246888899999532211111234689999999999999999
Q ss_pred ceEeeCC
Q 002867 220 PWIMCKQ 226 (872)
Q Consensus 220 p~~~~~~ 226 (872)
|..|.++
T Consensus 173 pV~T~ds 179 (305)
T COG5309 173 PVTTVDS 179 (305)
T ss_pred ceeeccc
Confidence 9888665
No 155
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=35.09 E-value=1.8e+02 Score=27.74 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=42.3
Q ss_pred eEEEEEEecCCCCCccccCCCcceEEecCcceEEEEEECCEEEEEEEcccC-----CCeeEEEeeeeccCC-ccEEEEEE
Q 002867 475 YLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLE-----FPKLTFTEGVNMRAG-INKIALLS 548 (872)
Q Consensus 475 yllYrt~i~~~~~~~~~~~~~~~~L~v~~~~d~a~Vfvng~~vG~~~~~~~-----~~~~~~~~~~~l~~g-~~~L~ILv 548 (872)
.+.|++.|..+.++. -++.+. ..|.+.+||||+.+-...+... .........+.|.+| .+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 556888887655442 233343 6688999999999877654321 001122233445554 78888887
Q ss_pred eccCC
Q 002867 549 IAVGL 553 (872)
Q Consensus 549 en~Gr 553 (872)
.+.+.
T Consensus 119 ~~~~~ 123 (145)
T PF07691_consen 119 FNRGG 123 (145)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 66653
No 156
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=34.26 E-value=80 Score=35.36 Aligned_cols=59 Identities=27% Similarity=0.298 Sum_probs=41.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccC---CccCCCCc--------eeeeccchhHHHHHHHHHHcCCEEEEec
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFW---NGHEPSPG--------KYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~W---n~hEp~~G--------~ydf~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
.+..-+++++.+|..|+|++-.-+== ++.=|... +=.|- |+..||+.|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 45567889999999999998653321 11111111 11233 99999999999999999995
No 157
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=33.95 E-value=98 Score=30.53 Aligned_cols=90 Identities=12% Similarity=0.215 Sum_probs=46.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeec---cchhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCc
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE---GNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPV 136 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~---g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~ 136 (872)
.+...+..++.|+++|+..+-+|.....+ ...|... |..|-..-+..|+++|+. . |-|.
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~---~~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~I 97 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRE---TSDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPI 97 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-----------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEeccccc---ccccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEE
Confidence 46889999999999999999998877221 2222222 668899999999999983 1 2333
Q ss_pred ccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhc
Q 002867 137 WLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAE 171 (872)
Q Consensus 137 WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~ 171 (872)
++--+-+ ..+..+.+.+..||+.+.+.|...
T Consensus 98 YfavD~d----~~~~~~~~~i~~Y~~g~~~~l~~~ 128 (136)
T PF08924_consen 98 YFAVDYD----ATDAECDSAILPYFRGWNSALGAS 128 (136)
T ss_dssp EEE--TS-----B-HH-------HHHHHHHHHGGG
T ss_pred EEEeecC----CCchhhhhHHHHHHHHHHHHHhhC
Confidence 4332211 246677788888999988888843
No 158
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=33.39 E-value=66 Score=35.11 Aligned_cols=50 Identities=26% Similarity=0.223 Sum_probs=35.7
Q ss_pred HHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 002867 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (872)
Q Consensus 67 ~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpG 122 (872)
...++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII-----GHSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe-----CcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 356899999998888 566666655422 23344444449999999999988
No 159
>PLN02877 alpha-amylase/limit dextrinase
Probab=33.17 E-value=77 Score=40.97 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 002867 101 YDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 101 ~dl~~fl~la~~~GL~Vilrp 121 (872)
++++++|+.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999974
No 160
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=33.02 E-value=3.1e+02 Score=29.05 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=31.3
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 002867 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (872)
Q Consensus 65 ~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vi 118 (872)
++.++.|+++|++++.+- |=| .|||. ..-|.+.++..++.|+..+
T Consensus 67 ~~~~~~L~~~G~d~~tla---NNH-----~fD~G-~~gl~~t~~~l~~~~i~~~ 111 (239)
T cd07381 67 PEVADALKAAGFDVVSLA---NNH-----TLDYG-EEGLLDTLDALDEAGIAHA 111 (239)
T ss_pred HHHHHHHHHhCCCEEEcc---ccc-----ccccc-hHHHHHHHHHHHHcCCcee
Confidence 356789999999999882 223 35553 3357777788888898754
No 161
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=32.81 E-value=75 Score=37.01 Aligned_cols=69 Identities=14% Similarity=0.288 Sum_probs=46.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCcccceec
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCAEW 129 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~--~dl~~fl~la~~~GL~VilrpGPyicaEw 129 (872)
..+...+.++.+++.|+-.=...+-..+.. ..+.|.|+.. -|..++++..++.|+++++..-|+|..+-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 466778999999999997665554433322 4445555532 38999999999999999999888886553
No 162
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=32.36 E-value=1.1e+02 Score=37.98 Aligned_cols=76 Identities=17% Similarity=0.297 Sum_probs=52.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-cc-----CCc-cCCC-Cceee---------eccchhHHHHHHHHHHcCCEEEEecC
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTY-VF-----WNG-HEPS-PGKYY---------FEGNYDLVKFIKLAKQAGLYVNLRIG 122 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~ty-v~-----Wn~-hEp~-~G~yd---------f~g~~dl~~fl~la~~~GL~VilrpG 122 (872)
.+..|+ -++.+|+++|-+- ++ |.. .-|. .|-|| |....|++++++.|+++||+||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 556664 6788999999862 33 432 1232 46666 33357999999999999999997632
Q ss_pred --------cccceecCCCCCCcccc
Q 002867 123 --------PYVCAEWNFGGFPVWLK 139 (872)
Q Consensus 123 --------PyicaEw~~GGlP~WL~ 139 (872)
||.-||.+.+-+|.|..
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y~ 176 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLYH 176 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCcee
Confidence 46667777777777763
No 163
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.13 E-value=58 Score=35.03 Aligned_cols=56 Identities=14% Similarity=0.042 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCC----CceeeeccchhHHHHHHHHHHcCCEEEEec
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS----PGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~----~G~ydf~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
+.+++.++.++++|..+|.+. ..+... +-.++.. ...|.++.++|+++|+.+.+.+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~---~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLIS---AAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEc---CCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 356677889999999999663 223211 1122221 1368999999999999998886
No 164
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=31.97 E-value=83 Score=35.75 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=50.4
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcc----------cCCccCCC---------Cceeeecc---chhHHHHHH
Q 002867 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYV----------FWNGHEPS---------PGKYYFEG---NYDLVKFIK 108 (872)
Q Consensus 54 ~Hy~R~---~~~~W~~~l~k~ka~GlN~V~tyv----------~Wn~hEp~---------~G~ydf~g---~~dl~~fl~ 108 (872)
+|..|. ..+.-++.++++++.||.+=.+++ .|+...-. -+.++|.. --|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 566664 566678899999999997655544 24432211 13333431 127999999
Q ss_pred HHHHcCCEEEEecCcccc
Q 002867 109 LAKQAGLYVNLRIGPYVC 126 (872)
Q Consensus 109 la~~~GL~VilrpGPyic 126 (872)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998888885
No 165
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.86 E-value=1.7e+02 Score=33.48 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=45.3
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccc----CCccC----------------------------CCCceeeeccchhHHHH
Q 002867 59 SSPEMWPDLIQKAKDGGLDVIQTYVF----WNGHE----------------------------PSPGKYYFEGNYDLVKF 106 (872)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~tyv~----Wn~hE----------------------------p~~G~ydf~g~~dl~~f 106 (872)
.+.+..++.|+.|...++|+...++. |.+-- +..|.|- ..|+.++
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHH
Confidence 36888999999999999999998763 43211 1123343 3499999
Q ss_pred HHHHHHcCCEEEEe
Q 002867 107 IKLAKQAGLYVNLR 120 (872)
Q Consensus 107 l~la~~~GL~Vilr 120 (872)
++.|++.|+.||.-
T Consensus 92 v~yA~~rgI~VIPE 105 (357)
T cd06563 92 VAYAAERGITVIPE 105 (357)
T ss_pred HHHHHHcCCEEEEe
Confidence 99999999999975
No 166
>PLN03059 beta-galactosidase; Provisional
Probab=30.95 E-value=1.6e+02 Score=37.49 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=31.4
Q ss_pred CCCceEEEEEEECCCCCCc------eEEEeCCC-ceEEEEECCeeccccc
Q 002867 648 RQPLTWYRTTFSAPAGNAP------LALDMGSM-GKGQVWVNGQSIGRHW 690 (872)
Q Consensus 648 ~~~~~fY~~tF~lp~~~dp------~~Ld~~g~-gKG~vwVNG~nlGRYW 690 (872)
..+-.||+++|+++....+ ..|.+.+. -+.+|||||+-+|.-.
T Consensus 468 ~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~ 517 (840)
T PLN03059 468 ATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVY 517 (840)
T ss_pred CCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEE
Confidence 3467999999998653211 13666654 5789999999999876
No 167
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=30.71 E-value=72 Score=39.83 Aligned_cols=55 Identities=27% Similarity=0.353 Sum_probs=41.4
Q ss_pred HHHHHHHCCCCEEEE-cccCCccCCCC---c-----------------eeeecc-----chhHHHHHHHHHHcCCEEEEe
Q 002867 67 LIQKAKDGGLDVIQT-YVFWNGHEPSP---G-----------------KYYFEG-----NYDLVKFIKLAKQAGLYVNLR 120 (872)
Q Consensus 67 ~l~k~ka~GlN~V~t-yv~Wn~hEp~~---G-----------------~ydf~g-----~~dl~~fl~la~~~GL~Vilr 120 (872)
.|.-+|.+|+++|+. +|+.-..|+.. | .|--+. .+.+..+|+.++++||-|||.
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 389999999999996 78766665543 2 222223 257889999999999999997
Q ss_pred c
Q 002867 121 I 121 (872)
Q Consensus 121 p 121 (872)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 168
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=30.06 E-value=78 Score=34.60 Aligned_cols=52 Identities=27% Similarity=0.264 Sum_probs=35.4
Q ss_pred HHHHHHHHHCCCCEEEEcccCC--ccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 002867 65 PDLIQKAKDGGLDVIQTYVFWN--GHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (872)
Q Consensus 65 ~~~l~k~ka~GlN~V~tyv~Wn--~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vil 119 (872)
++.+++||++|++.|...+--+ .++...+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 6789999999999988765411 112222233444 667889999999998643
No 169
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=30.01 E-value=1e+02 Score=33.49 Aligned_cols=49 Identities=29% Similarity=0.331 Sum_probs=39.1
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 002867 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (872)
Q Consensus 68 l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpG 122 (872)
..++|++|++.|-+ -|..++--|.-+ +.++.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII-----GHSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 46899999988887 455555555433 56899999999999999999987
No 170
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=30.00 E-value=24 Score=31.73 Aligned_cols=37 Identities=32% Similarity=0.643 Sum_probs=26.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHc
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQA 113 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~ 113 (872)
....|-.-++.+.. .||.|-.|||. +|.+||++|-|-
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 45568777776654 48999999999 999999999873
No 171
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=28.75 E-value=89 Score=40.18 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 002867 101 YDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 101 ~dl~~fl~la~~~GL~Vilrp 121 (872)
.++.++|+.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999974
No 172
>PRK09267 flavodoxin FldA; Validated
Probab=28.73 E-value=2.9e+02 Score=27.55 Aligned_cols=74 Identities=8% Similarity=0.077 Sum_probs=48.0
Q ss_pred ECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 002867 42 INGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (872)
Q Consensus 42 idG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vi 118 (872)
+..-..++++...|+...++..|.+-+.+++...++-..+.+|= ......-.-.| ..-+..+-+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 34556688999999878788899999998877777766666662 21111000111 2246667777888896654
No 173
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=28.41 E-value=56 Score=32.87 Aligned_cols=64 Identities=17% Similarity=0.079 Sum_probs=43.0
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccC-CccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCccc
Q 002867 61 PEMWPDLIQKAKDGGLDVIQTYVFW-NGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYV 125 (872)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~tyv~W-n~hEp~--~G~ydf~g~~dl~~fl~la~~~GL~VilrpGPyi 125 (872)
.+..++.++.++++|...|.+...+ ..+... +..++.- ...|.++.+.|+++|+.+.+.+-|+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~i~lE~~~~~ 136 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL-AENLRELAEIAEEYGVRIALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH-HHHHHHHHHHHHHHTSEEEEE-SSSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH-HHHHHHHHhhhhhhcceEEEecccCc
Confidence 4567888999999999998887553 122111 1122211 24788899999999999999986543
No 174
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=28.03 E-value=74 Score=36.35 Aligned_cols=65 Identities=9% Similarity=0.033 Sum_probs=45.2
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 002867 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 54 ~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
-++ |.+...=....+.++++|.++|.+.|+|.-.++. .-+-.-..+|.++.+.|+++||-+++-+
T Consensus 99 ~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 99 APG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 344 5544333334678999999999999999854331 0011233489999999999999988853
No 175
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=28.02 E-value=1.8e+02 Score=24.48 Aligned_cols=46 Identities=30% Similarity=0.353 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vilr 120 (872)
...++.++.+|+.|++.|.+- -|. ++. ...++.+++++.||.||..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 346789999999999999762 221 222 4678889999999988753
No 176
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=28.02 E-value=75 Score=35.55 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=41.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCccCC------CCc---------eeeeccchhHHHHHHHHHHcCCEEEEe
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------SPG---------KYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~----Wn~hEp------~~G---------~ydf~g~~dl~~fl~la~~~GL~Vilr 120 (872)
+.+.-++.|+.|...++|++..++- |.+.-+ +.| .|.- .|+.++++.|++.||.||.-
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCceeee
Confidence 7788899999999999999998875 443211 122 3333 49999999999999999964
No 177
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=27.98 E-value=1.2e+02 Score=36.08 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=45.9
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 002867 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (872)
Q Consensus 54 ~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vilr 120 (872)
..|.+.|.+.-++.++++.+.|+..|+++.+-|.. +++...++.|+++|+.|.+.
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEE
Confidence 34667788888899999999999999999887654 26889999999999988655
No 178
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=27.66 E-value=1.1e+02 Score=35.79 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCCEEEE-cccC---CccCCCCcee-----eeccchhHHHHHHHHHHcCCEEEEe
Q 002867 66 DLIQKAKDGGLDVIQT-YVFW---NGHEPSPGKY-----YFEGNYDLVKFIKLAKQAGLYVNLR 120 (872)
Q Consensus 66 ~~l~k~ka~GlN~V~t-yv~W---n~hEp~~G~y-----df~g~~dl~~fl~la~~~GL~Vilr 120 (872)
+.|.-+|.+|+++|-+ .++= ..|---.--| .|....|++++++.|++.||+||+-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 7889999999999964 3331 1222110000 5677789999999999999999986
No 179
>PLN02784 alpha-amylase
Probab=26.85 E-value=1.2e+02 Score=38.63 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCCc--eee-------eccchhHHHHHHHHHHcCCEEEEec
Q 002867 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPG--KYY-------FEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 65 ~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G--~yd-------f~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
.++|.-++++|+++|-+.=+.....+ .| .+| |....+|.++|+.|+++||.||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 55778889999999987533221111 12 122 2335799999999999999999874
No 180
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=26.76 E-value=92 Score=28.05 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=25.3
Q ss_pred cCCceEeeccccc-ccCccccc----C-CCCHHHHHHHHHHH---HhcCCCcceE
Q 002867 177 QGGPIILSQIENE-YGPMEYEI----G-APGRSYTRWAAKMA---VGLGTGVPWI 222 (872)
Q Consensus 177 ~gGpII~vQiENE-yg~~~~~~----~-~~~~~y~~~l~~~~---~~~gi~vp~~ 222 (872)
+...|.+|+|=|| .++....+ + .....|.+||++++ |+.+-+.|+.
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt 61 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVT 61 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 3457999999999 56322111 1 12456677777665 4556667764
No 181
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=26.17 E-value=1.2e+02 Score=33.54 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=43.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCC--CCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP--SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp--~~G~ydf~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 4677899999999999999999875432111 12211222 2378999999999999887763
No 182
>PRK11372 lysozyme inhibitor; Provisional
Probab=25.85 E-value=1.3e+02 Score=28.73 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=13.8
Q ss_pred cchhhHHHHHHHHHhcCCC
Q 002867 7 LGMCNVLLILLLGCSGLFA 25 (872)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (872)
|+||.+++++++++++.++
T Consensus 1 ~~mk~ll~~~~~~lL~gCs 19 (109)
T PRK11372 1 MSMKKLLIICLPVLLTGCS 19 (109)
T ss_pred CchHHHHHHHHHHHHHHhc
Confidence 5799988777766666664
No 183
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.74 E-value=97 Score=33.41 Aligned_cols=59 Identities=20% Similarity=0.064 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCCC-ceeeeccchhHHHHHHHHHHcCCEEEEec
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-GKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~-G~ydf~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
+.+++.++.++++|.+.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 4577889999999999998631100011111 11111 11468888999999999998876
No 184
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=25.49 E-value=1.5e+02 Score=32.50 Aligned_cols=49 Identities=24% Similarity=0.286 Sum_probs=41.0
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 002867 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (872)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vil 119 (872)
.|.+.=++++++..+.|+..|+++++.|. ...+...++.|+++|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHCCCeEEE
Confidence 45566788999999999999999888665 23789999999999998775
No 185
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.30 E-value=1.8e+02 Score=32.63 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=43.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc--CCcc---CC------------------------CCceeeeccchhHHHHHHHH
Q 002867 60 SPEMWPDLIQKAKDGGLDVIQTYVF--WNGH---EP------------------------SPGKYYFEGNYDLVKFIKLA 110 (872)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~tyv~--Wn~h---Ep------------------------~~G~ydf~g~~dl~~fl~la 110 (872)
+.+..++.|+.|...++|++..++- |.+- .| ..|.|. ..++.++++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 7888999999999999999997653 3221 11 122232 35999999999
Q ss_pred HHcCCEEEEe
Q 002867 111 KQAGLYVNLR 120 (872)
Q Consensus 111 ~~~GL~Vilr 120 (872)
++.|+.||.-
T Consensus 92 ~~rgI~vIPE 101 (326)
T cd06564 92 KDRGVNIIPE 101 (326)
T ss_pred HHcCCeEecc
Confidence 9999999964
No 186
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=25.16 E-value=98 Score=36.16 Aligned_cols=67 Identities=24% Similarity=0.301 Sum_probs=46.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEE-EEecCcccceecCCCCCC
Q 002867 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV-NLRIGPYVCAEWNFGGFP 135 (872)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~V-ilrpGPyicaEw~~GGlP 135 (872)
...+.-+..|+.+|+.|+|+|=+++.=.---+.+-.|.= -..|-+.+++++.+.|..+ +|..| ||+|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~ 257 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG---------GGFP 257 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC---------CCCC
Confidence 456677889999999999999997653322222222221 1357777888999999985 68876 7876
No 187
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=25.04 E-value=1.4e+02 Score=31.68 Aligned_cols=44 Identities=23% Similarity=0.154 Sum_probs=34.8
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 002867 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 68 l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
..++|++|++.|-+ -|..++ |.-+ |+.+=++.|.++||.+|++.
T Consensus 74 ~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 56899999987777 344444 5544 69999999999999999986
No 188
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.15 E-value=27 Score=36.06 Aligned_cols=65 Identities=29% Similarity=0.463 Sum_probs=43.8
Q ss_pred EEEEEEeeCCCC---CcccHHHHHHHHHHCCCCEEE--EcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 002867 48 ILISGSIHYPRS---SPEMWPDLIQKAKDGGLDVIQ--TYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (872)
Q Consensus 48 ~~~sG~~Hy~R~---~~~~W~~~l~k~ka~GlN~V~--tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vilr 120 (872)
..-+|--.|.|+ .|-.-+ +-+.++|++.+- |-| .--.--|||-...+|.+|+++|+++||.+-|.
T Consensus 117 VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDTai-----KDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 117 VVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDTAI-----KDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EEeccccchhhccCcCccccH---HHHHhcCCCEEEEeccc-----ccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 445666667775 344333 346678888654 322 12233599988889999999999999998764
No 189
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=24.12 E-value=3.7e+02 Score=31.64 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=0.0
Q ss_pred ECCeEeEEEEEEeeCCC---CCcccHHHHHHHHHHCCCC----EEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcC
Q 002867 42 INGKRRILISGSIHYPR---SSPEMWPDLIQKAKDGGLD----VIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAG 114 (872)
Q Consensus 42 idG~p~~~~sG~~Hy~R---~~~~~W~~~l~k~ka~GlN----~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~G 114 (872)
+++.-|++|.++-+-++ +.++.-+.-.+.+++.|++ ++.....-|+-.|.+..++++ ..-+.+-|+.|.+.|
T Consensus 153 ~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA~~LG 231 (413)
T PTZ00372 153 IAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRCEQLG 231 (413)
T ss_pred cCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHHHHcC
Q ss_pred CE-EEEecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeecccc
Q 002867 115 LY-VNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIEN 188 (872)
Q Consensus 115 L~-VilrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiEN 188 (872)
.. |++-|| -........++.+++.+.|.+.++ ...|..|++ ||
T Consensus 232 a~~VV~HPG-----------------------s~~~~~~~ee~i~~i~e~L~~~la------~~~gV~IlL--EN 275 (413)
T PTZ00372 232 IKLYNFHPG-----------------------STVGQCSKEEGIKNIADCINKAHE------ETKSVIIVL--EN 275 (413)
T ss_pred CCEEEECCC-----------------------cCCCCCCHHHHHHHHHHHHHHHHh------CcCCCEEEE--ec
No 190
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=23.88 E-value=2.7e+02 Score=32.82 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=60.9
Q ss_pred eCCCC--CcccHHHHHHHHHHCCCCEEEE-cccCCccC--C--CCceeee-----cc-----chhHHHHHHHHH-HcCCE
Q 002867 55 HYPRS--SPEMWPDLIQKAKDGGLDVIQT-YVFWNGHE--P--SPGKYYF-----EG-----NYDLVKFIKLAK-QAGLY 116 (872)
Q Consensus 55 Hy~R~--~~~~W~~~l~k~ka~GlN~V~t-yv~Wn~hE--p--~~G~ydf-----~g-----~~dl~~fl~la~-~~GL~ 116 (872)
+.+++ +-+.|+++|+.++++|.|+|.. ++---... | ...+..| .. ..++.++|..++ ++||.
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 34443 5568999999999999999984 22110000 0 0111111 11 149999999985 78999
Q ss_pred EEEecCcccceecCCCCC-CcccccCCCeeeecCChhhHHHH---HHHHHHHHHHHH
Q 002867 117 VNLRIGPYVCAEWNFGGF-PVWLKYIPGINFRTENGPFKAEM---HKFTKKIVDMMK 169 (872)
Q Consensus 117 VilrpGPyicaEw~~GGl-P~WL~~~p~~~~Rt~dp~y~~~~---~~~~~~l~~~i~ 169 (872)
++...= |+.-.. =.||..+|+.-.=-.+.++++.+ ++-+-++-..|.
T Consensus 93 ~~~DvV------~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL~~fS~~l~ 143 (423)
T PF14701_consen 93 SMTDVV------LNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRALLEFSKDLE 143 (423)
T ss_pred EEEEEe------eccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 765431 222221 37999988753333344555432 334444444444
No 191
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.67 E-value=3.3e+02 Score=29.39 Aligned_cols=103 Identities=18% Similarity=0.148 Sum_probs=56.4
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCccCCC-Cceeee----ccchhHHHHHHHHHHcCCEEEEecCcccceecCCCC
Q 002867 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYF----EGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGG 133 (872)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~-~G~ydf----~g~~dl~~fl~la~~~GL~VilrpGPyicaEw~~GG 133 (872)
+.++.-+...+.+++.|+.+...-. ..|.+. ++.-|= .....+++.|++|++.|..+|.-+ |
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~-----------~ 120 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLA-----------G 120 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEC-----------C
Confidence 4566667777788899998765421 112111 111110 012368889999999999876422 1
Q ss_pred CCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccc
Q 002867 134 FPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYG 191 (872)
Q Consensus 134 lP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQiENEyg 191 (872)
.+.|.. ..++...+.....++.|++..+++ | |-+.|||-.+
T Consensus 121 ~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 121 YDVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred cccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 122211 112334455556667777777633 3 3456788543
No 192
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=23.23 E-value=1.4e+02 Score=33.66 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=73.8
Q ss_pred EECCeEeEEEEE------EeeC---CCCCcccHHHHHHHHH---HCCCCEEEE-cccCC-----ccC--CCCceeeeccc
Q 002867 41 AINGKRRILISG------SIHY---PRSSPEMWPDLIQKAK---DGGLDVIQT-YVFWN-----GHE--PSPGKYYFEGN 100 (872)
Q Consensus 41 ~idG~p~~~~sG------~~Hy---~R~~~~~W~~~l~k~k---a~GlN~V~t-yv~Wn-----~hE--p~~G~ydf~g~ 100 (872)
.-+|||+.-+-- +.|- .-..+..|+=-+.-+| +.|+|-|+. ||-.- +|. ....+++.+-.
T Consensus 163 ~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~ 242 (400)
T COG1306 163 YKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKS 242 (400)
T ss_pred EcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChH
Confidence 337777754432 2322 2237888987665555 459999997 76532 222 23456666666
Q ss_pred hhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccc
Q 002867 101 YDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQ 177 (872)
Q Consensus 101 ~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~ 177 (872)
.-|..||..|+|. |.|=+- .+--|.-.|...+.. --.+.+++..|++.|.+..- |-++++
T Consensus 243 ~Al~sfL~yArE~-l~vpIS--------~DIYG~nGw~~t~~~------~GQ~~e~ls~yVDvIsPMfY--PSHy~~ 302 (400)
T COG1306 243 EALQSFLHYAREE-LEVPIS--------ADIYGQNGWSSTDMA------LGQFWEALSSYVDVISPMFY--PSHYGK 302 (400)
T ss_pred HHHHHHHHHHHHh-cccceE--------EEeecccCccCCcch------hhhhHHHHHhhhhhcccccc--cccccc
Confidence 7899999999874 544222 123455666654321 13577888899999888777 655544
No 193
>PRK10426 alpha-glucosidase; Provisional
Probab=23.03 E-value=4.3e+02 Score=32.86 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHCCCCEEEEcc-cCCccCCC----Cc--eeeeccc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 002867 63 MWPDLIQKAKDGGLDVIQTYV-FWNGHEPS----PG--KYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (872)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~tyv-~Wn~hEp~----~G--~ydf~g~--~dl~~fl~la~~~GL~VilrpGPyic 126 (872)
..++.++++|+.|+-+=.+++ .|...... .. .|.|+-. -|..++|+..++.|+++++..=|||+
T Consensus 222 ~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~ 294 (635)
T PRK10426 222 VVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLA 294 (635)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccC
Confidence 456789999999987554443 36432211 11 1233322 38999999999999999998878875
No 194
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=22.99 E-value=1.1e+02 Score=32.81 Aligned_cols=59 Identities=12% Similarity=-0.069 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCCCce-eeeccchhHHHHHHHHHHcCCEEEEec
Q 002867 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGK-YYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~-ydf~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
+..++.++.++++|..+|.+...+.--...+.+ ++ .-...|.++.++|+++|+.+.+-|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHA-TLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 446788899999999999764333211111111 11 112467888899999999999986
No 195
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=22.58 E-value=2.5e+02 Score=34.65 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=74.3
Q ss_pred CeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 002867 44 GKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (872)
Q Consensus 44 G~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpGP 123 (872)
+++-+.+++..|+.+.+.+.=-++|.+-.++|...+-|-.+++. + .+.+|++.+++.++.||..+-|
T Consensus 460 ~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImP 526 (612)
T PRK08645 460 KKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMP 526 (612)
T ss_pred CCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeee
Confidence 34557889999877665444445666677899999999766544 3 7889999988778888877666
Q ss_pred ccce--------ecCCCCCCcccccC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 124 YVCA--------EWNFGGFPVWLKYI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 124 yica--------Ew~~GGlP~WL~~~-p~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
.... +|..-=+|.|+.+. .. .. +...++++--++..++++.+.
T Consensus 527 i~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 527 LVSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred cCCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 4433 34444568888762 11 11 223567777777777777776
No 196
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=22.50 E-value=2.9e+02 Score=31.47 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=46.3
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccc----CCccCC------CCceeeecc---chhHHHHHHHHHHcCCEEEEe
Q 002867 59 SSPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------SPGKYYFEG---NYDLVKFIKLAKQAGLYVNLR 120 (872)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~tyv~----Wn~hEp------~~G~ydf~g---~~dl~~fl~la~~~GL~Vilr 120 (872)
.+.+..++.|+.|....+|+...++- |.+--+ +.|.|.=.| ..|+.++++.|++.|+.||.-
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEe
Confidence 36888999999999999999998764 555322 123322111 349999999999999999975
No 197
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=22.41 E-value=3.6e+02 Score=25.64 Aligned_cols=80 Identities=13% Similarity=0.264 Sum_probs=48.9
Q ss_pred ceEEEEECCeeccccccccccCCCCCcccccCccccccccCCCCCCceeeeecCccccccCCceEEEEEecCCCCCcEEE
Q 002867 675 GKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISL 754 (872)
Q Consensus 675 gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~~G~~~~~~~~~~~g~PQqtlY~VP~~~Lk~g~N~IvvfEe~g~~p~~i~~ 754 (872)
.+.+|++||.-+.||=.+. . . ..++ |+|+.+ .|.|+|.| + + .++.+
T Consensus 27 ~~~~I~~~g~~~~~i~L~~--~---------~-------------~~~~-i~i~~~---~g~~~i~i-~--~---g~vrv 72 (113)
T PF07009_consen 27 KYAVIYVDGKEVKRIPLDK--V---------N-------------EDKT-IEIDGD---GGYNTIEI-K--D---GKVRV 72 (113)
T ss_dssp EEEEEEETTEEEEEEETTS------------B-------------SEEE-EEEETT---TCEEEEEE-E--T---TEEEE
T ss_pred eEEEEEECCEEEEEEECCC--C---------C-------------CCEE-EEEecC---CcEEEEEE-E--C---CEEEE
Confidence 6788999999999995321 0 0 3345 447543 35565554 2 2 34777
Q ss_pred eee-chhhhhhhhhccCccccccccccCCCcCCCCCCceEEecCCCCeEEEEe
Q 002867 755 VRR-EIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIK 806 (872)
Q Consensus 755 ~~~-~~~~ic~~~~e~~~~~~~~w~~~~~~~~~~~~~~~~L~C~~G~~I~~I~ 806 (872)
.+. =.+++|.+.. |-+..|+ .+-|-+.++++.|.
T Consensus 73 ~~s~CpdkiCv~~G---------~I~~~G~---------~IVCLPn~lvI~I~ 107 (113)
T PF07009_consen 73 IESDCPDKICVKTG---------WISRPGQ---------SIVCLPNRLVIEIE 107 (113)
T ss_dssp EEESTSS-HHHHS----------SB-STT----------EEEETTTTEEEEEE
T ss_pred EECCCCCcchhhCC---------CcCCCCC---------EEEEcCCEEEEEEE
Confidence 666 4568998875 4433333 58999998887776
No 198
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=22.13 E-value=3.4e+02 Score=30.33 Aligned_cols=87 Identities=20% Similarity=0.152 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHcCCEEEEecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCc
Q 002867 101 YDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGP 180 (872)
Q Consensus 101 ~dl~~fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGp 180 (872)
..+.+.|+.|++.|++|+|-+|- |. |. . . ..++ +..+++.+.|.+.++++.
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG-----~~-~~--------~--~--~~~~---~~~~~fa~sl~~~~~~~g-------- 110 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGG-----AN-GH--------V--D--LNHT---AQEDNFVDSIVAIIKEYG-------- 110 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeC-----CC-Cc--------c--c--cCCH---HHHHHHHHHHHHHHHHhC--------
Confidence 36888899999999999998761 11 10 0 0 1222 345677888888888554
Q ss_pred eEeecccccccCcccccCCCCHHHHHHHHHHHHhcC
Q 002867 181 IILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLG 216 (872)
Q Consensus 181 II~vQiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 216 (872)
+=++.|+=|+.............|.+.|+++-.+.+
T Consensus 111 ~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~ 146 (312)
T cd02871 111 FDGLDIDLESGSNPLNATPVITNLISALKQLKDHYG 146 (312)
T ss_pred CCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcC
Confidence 347788888865310000011445555555444433
No 199
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=22.09 E-value=1.2e+02 Score=32.96 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=32.2
Q ss_pred EECCeEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEE
Q 002867 41 AINGKRRILISGSIHYPRS-SPEMWPDLIQKAKDGGLDVIQT 81 (872)
Q Consensus 41 ~idG~p~~~~sG~~Hy~R~-~~~~W~~~l~k~ka~GlN~V~t 81 (872)
.+.|++...+.|.+|+... ...+-+.-++.||++|+..|=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 4589999999999997554 4444478899999999976543
No 200
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.85 E-value=1.7e+02 Score=23.73 Aligned_cols=55 Identities=16% Similarity=0.345 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEE
Q 002867 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV 117 (872)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~V 117 (872)
|..-.+.+.-+.+.|+|.+.++. +...+.....+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 34456778889999999988876 3333234455555533 4889999999999765
No 201
>PLN02429 triosephosphate isomerase
Probab=21.83 E-value=1.4e+02 Score=33.86 Aligned_cols=45 Identities=29% Similarity=0.272 Sum_probs=32.6
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHH----HHHcCCEEEEecC
Q 002867 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKL----AKQAGLYVNLRIG 122 (872)
Q Consensus 68 l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~l----a~~~GL~VilrpG 122 (872)
.+++|++|++.|-+ -|..++-.|. +.+++|.. |.++||.+|++.|
T Consensus 140 a~mLkd~Gv~~Vii-----GHSERR~~f~-----Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL-----GHSERRHVIG-----EKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe-----CccccCCCCC-----cCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 45788889877776 4555555554 34555555 9999999999988
No 202
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=21.56 E-value=3e+02 Score=30.14 Aligned_cols=108 Identities=18% Similarity=0.258 Sum_probs=67.8
Q ss_pred eEEEEEEeeCCCCCccc-H---HHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 002867 47 RILISGSIHYPRSSPEM-W---PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (872)
Q Consensus 47 ~~~~sG~~Hy~R~~~~~-W---~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpG 122 (872)
.+.+++..|+.+-|... - .++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+.+|
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 47788888877643321 1 24566667899998888544 4444 789999999999776544444
Q ss_pred --cccc-------eecCCCCCCcccccCCCeeeecCC-hhhHHHHHHHHHHHHHHHH
Q 002867 123 --PYVC-------AEWNFGGFPVWLKYIPGINFRTEN-GPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 123 --Pyic-------aEw~~GGlP~WL~~~p~~~~Rt~d-p~y~~~~~~~~~~l~~~i~ 169 (872)
|-.. ++|..-.+|.|+.+.=. +. .++ ...+++--++..++++.+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~-~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KY-DDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3222 23566678999876200 01 123 3455666677777777776
No 203
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=21.51 E-value=1.4e+02 Score=36.62 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=44.9
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 002867 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (872)
Q Consensus 54 ~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vi 118 (872)
+=|.|.|.+.-+..++++++.|+..|+++...|.. +++...++.|+++|+.+.
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQ 141 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEE
Confidence 45677788888889999999999999998877763 379999999999999864
No 204
>PRK10658 putative alpha-glucosidase; Provisional
Probab=21.37 E-value=1.9e+02 Score=36.08 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHHCCCCE--EEEcccCCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCcccce
Q 002867 61 PEMWPDLIQKAKDGGLDV--IQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (872)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~--V~tyv~Wn~hEp~~G~ydf~g~--~dl~~fl~la~~~GL~VilrpGPyica 127 (872)
.+...+.++++|+.|+-. |..-.+|.-. -.-+.|.|+-. -|..++++..++.|++|++..=|||..
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~-~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWMKE-FQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhhcC-CceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 344567889999999864 3333455321 11245666533 388999999999999999998888853
No 205
>PLN02389 biotin synthase
Probab=21.27 E-value=1.2e+02 Score=35.11 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCCCEEEEccc--CCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 002867 64 WPDLIQKAKDGGLDVIQTYVF--WNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (872)
Q Consensus 64 W~~~l~k~ka~GlN~V~tyv~--Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vi 118 (872)
=++.++++|++|++.+..-+- ...+...-..-+|+ +..+.++.|++.||.|-
T Consensus 177 ~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 468899999999998766221 21111111112444 67789999999999873
No 206
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=20.93 E-value=1.6e+02 Score=37.22 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=44.6
Q ss_pred ccHHHHHHHHHHCCCC--EEEEcccCCccCCCCceeeecc----chhHHHHHHHHHHcCCEEEEecCcccceec
Q 002867 62 EMWPDLIQKAKDGGLD--VIQTYVFWNGHEPSPGKYYFEG----NYDLVKFIKLAKQAGLYVNLRIGPYVCAEW 129 (872)
Q Consensus 62 ~~W~~~l~k~ka~GlN--~V~tyv~Wn~hEp~~G~ydf~g----~~dl~~fl~la~~~GL~VilrpGPyicaEw 129 (872)
+.-+++.+.+++||+. ++-+-+.|. ++.=||+= -.++..|++-.++.|+++++-+-|+|...-
T Consensus 311 s~~~dvv~~~~~agiPld~~~~DiDyM-----d~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~ 379 (805)
T KOG1065|consen 311 SVVRDVVENYRAAGIPLDVIVIDIDYM-----DGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNS 379 (805)
T ss_pred HHHHHHHHHHHHcCCCcceeeeehhhh-----hcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCc
Confidence 3348899999999997 444444443 33334432 236899999999999999988878886443
No 207
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.79 E-value=1.5e+02 Score=32.23 Aligned_cols=58 Identities=22% Similarity=0.141 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCC-ccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 002867 63 MWPDLIQKAKDGGLDVIQTYVFWN-GHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (872)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~tyv~Wn-~hEp~~G~ydf~g~~dl~~fl~la~~~GL~Vilrp 121 (872)
.+++.++.++++|.++|.+.-... ..+..+-.++.. ...+.+..++|+++|+.+.|.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRF-REGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHH-HHHHHHHHHHHHHcCCEEEEee
Confidence 467789999999999997632100 000000011111 1467788899999999999874
No 208
>PRK06703 flavodoxin; Provisional
Probab=20.74 E-value=5e+02 Score=25.35 Aligned_cols=100 Identities=11% Similarity=-0.014 Sum_probs=58.9
Q ss_pred ECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeec---cchhHHHHHHHHHHcCCEEE
Q 002867 42 INGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE---GNYDLVKFIKLAKQAGLYVN 118 (872)
Q Consensus 42 idG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~---g~~dl~~fl~la~~~GL~Vi 118 (872)
+..-..++++...+-.-.+|+.+.+-+..+++.-++.....+|-. ++++ .....+.+-+..++.|..++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~--------g~~~y~~~~~a~~~l~~~l~~~G~~~~ 117 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGS--------GDTAYPLFCEAVTIFEERLVERGAELV 117 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEcc--------CCCChHHHHHHHHHHHHHHHHCCCEEc
Confidence 334455666554443334566677778888776666555555522 2221 12456667777889999887
Q ss_pred EecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 119 LRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 119 lrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
.++ +-.+ .-.++..-+++++.|.++|++.++
T Consensus 118 ~~~---~~~~-----------------~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 118 QEG---LKIE-----------------LAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ccC---eEEe-----------------cCCCchhHHHHHHHHHHHHHHHHH
Confidence 753 1001 111124567888889888887776
No 209
>PRK15492 triosephosphate isomerase; Provisional
Probab=20.74 E-value=1.9e+02 Score=31.76 Aligned_cols=49 Identities=16% Similarity=0.119 Sum_probs=38.2
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 002867 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (872)
Q Consensus 68 l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~VilrpG 122 (872)
-.++|++|++.|-+ -|..++-.|.= -+..+.+=++.|.++||.+|++.|
T Consensus 87 a~mLkd~G~~~vii-----GHSERR~~f~E-td~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI-----GHSERRHKFGE-TDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE-----CccccccccCc-chHHHHHHHHHHHHCCCEEEEEcC
Confidence 45899999998887 46666666642 345667788899999999999987
No 210
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=20.48 E-value=73 Score=32.63 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHc-CCEEEEecCcccceec---CCCCCCcccccCC
Q 002867 101 YDLVKFIKLAKQA-GLYVNLRIGPYVCAEW---NFGGFPVWLKYIP 142 (872)
Q Consensus 101 ~dl~~fl~la~~~-GL~VilrpGPyicaEw---~~GGlP~WL~~~p 142 (872)
..+.+|++..+++ |..++|=.+++..... .....|.||-+.+
T Consensus 103 ~~~~~f~~~v~~~~G~~~~iY~~~~~~~~~~~~~~~~~~lWiA~Y~ 148 (184)
T cd06525 103 DYVLRFIEEFEKLSGLKVGIYTYTSFINNNLDSRLSSYPLWIANYG 148 (184)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecHHHHHHhccccccCCCeEEEecc
Confidence 4678999999988 9988887776543221 2345677887643
No 211
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=20.32 E-value=4.4e+02 Score=29.87 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=86.1
Q ss_pred ceeEEEccCcEEECCeEeEEEEEEeeC-CCCCc---ccHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHH
Q 002867 30 EGSVSYDSKAIAINGKRRILISGSIHY-PRSSP---EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVK 105 (872)
Q Consensus 30 ~~~v~~d~~~~~idG~p~~~~sG~~Hy-~R~~~---~~W~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~ 105 (872)
...|++-+.++.+|. .-+-++++. +-... ..-..++...++.|.+||-.--.= .-.||..+
T Consensus 15 ~lGvTl~HEHl~~~~---~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD~T~~------------~~GRdv~~ 79 (316)
T COG1735 15 DLGVTLMHEHLFIDP---YEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVDATNI------------GIGRDVLK 79 (316)
T ss_pred Hccceeehhhhccch---HHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEeeCCcc------------ccCcCHHH
Confidence 455677777777776 111222221 11111 112345667777899888542111 11379999
Q ss_pred HHHHHHHcCCEEEEecCcccceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 002867 106 FIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ 185 (872)
Q Consensus 106 fl~la~~~GL~VilrpGPyicaEw~~GGlP~WL~~~p~~~~Rt~dp~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~vQ 185 (872)
..+.+++.||.++...|+|.-+.|+ .|+...+ ++.+...+++.++ +.+ . |+=|..=
T Consensus 80 m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--------------i~~~ae~~v~ei~-~Gi---~-gT~ikAG 135 (316)
T COG1735 80 MRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--------------IEELAEFVVKEIE-EGI---A-GTGIKAG 135 (316)
T ss_pred HHHHHHHhCCcEEEeccccccccch-----hHHhhCC--------------HHHHHHHHHHHHH-hcc---c-CCccccc
Confidence 9999999999999999999988874 6776533 3445555555555 111 1 2222211
Q ss_pred ccccccCcccccCCCCHHHHHHHHHHHHhc-CCCcceEeeCC
Q 002867 186 IENEYGPMEYEIGAPGRSYTRWAAKMAVGL-GTGVPWIMCKQ 226 (872)
Q Consensus 186 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~-gi~vp~~~~~~ 226 (872)
|=-|-|.+. .=.+.=.+.|+..+++. -.++|+.+-++
T Consensus 136 iIk~~~~~~----~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~ 173 (316)
T COG1735 136 IIKEAGGSP----AITPLEEKSLRAAARAHKETGAPISTHTP 173 (316)
T ss_pred eeeeccCcc----cCCHHHHHHHHHHHHHhhhcCCCeEEecc
Confidence 113444432 12233345666666663 45788876543
No 212
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.15 E-value=6.7e+02 Score=27.31 Aligned_cols=83 Identities=11% Similarity=0.043 Sum_probs=52.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCCceeeeccchhHHHHHHHHHHcCCEE--EEecCcccceecCCCCCCcccccCC
Q 002867 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV--NLRIGPYVCAEWNFGGFPVWLKYIP 142 (872)
Q Consensus 65 ~~~l~k~ka~GlN~V~tyv~Wn~hEp~~G~ydf~g~~dl~~fl~la~~~GL~V--ilrpGPyicaEw~~GGlP~WL~~~p 142 (872)
.+.++.+++.|+++|+.++-. |.--..+.-...+.++|-+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~----P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKS----PRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecC----ccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 568999999999999996531 1111111112237888888899998863 32224442
Q ss_pred CeeeecCChhhHHHHHHHHHHHHHHHH
Q 002867 143 GINFRTENGPFKAEMHKFTKKIVDMMK 169 (872)
Q Consensus 143 ~~~~Rt~dp~y~~~~~~~~~~l~~~i~ 169 (872)
+.+=+.|+..+++..+.+++.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22335577777777777777666665
Done!