BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002868
(872 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
Promoter Binding Protein-Like 4
Length = 94
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 22/24 (91%)
Query: 34 VAEFDEGKRSCRRRLAGHNKRRRK 57
+ EFDE KRSCRRRLAGHN+RRRK
Sbjct: 61 LQEFDEAKRSCRRRLAGHNERRRK 84
>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa
Promoter Binding Protein-like 7
Length = 88
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 36 EFDEGKRSCRRRLAGHNKRRRKTHPD 61
+FDEGKRSCRR+L HN RR++ D
Sbjct: 58 DFDEGKRSCRRKLERHNNRRKRKPVD 83
>pdb|1YSP|A Chain A, Crystal Structure Of The C-Terminal Domain Of E. Coli
Transcriptional Regulator Kdgr
Length = 181
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 440 ERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPN 499
+ VK +++G RST R + + E V + + G D + + L+C++ P
Sbjct: 74 DEVKQILEGVEYKRSTERTITSTEALLPVLDQVREQGYGEDNEEQEEGLRCIAVP----- 128
Query: 500 VFGRGFIEVEDHGLSSSFVPFIVAEQEVCSEICMLESA 537
VF R + + GLS SF +E+ + + ML +A
Sbjct: 129 VFDRFGVVIA--GLSISFPTLRFSEERLQEYVAMLHTA 164
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 60/149 (40%), Gaps = 23/149 (15%)
Query: 637 EMG--LLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFK-------- 686
E+G L+ A N + +LL N A N D G G I K
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
Query: 687 PNVIGPAGLTPLHVAACRDDAENVLDALTD--DPGSVGIEAWKSAQDSTGLTPNDYASLR 744
PN G TPLH AA E V L+ DP +A+DS G TP YA+
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP---------NAKDSDGRTPLHYAAEN 113
Query: 745 AHHSYIHLVQRK-INKKSSES-GRVILDI 771
H + L+ K + +S+S GR LD+
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDL 142
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 32.7 bits (73), Expect = 0.96, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 57/149 (38%), Gaps = 23/149 (15%)
Query: 637 EMG--LLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFK-------- 686
E+G L+ A N + +LL N A N D G L G + K
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
Query: 687 PNVIGPAGLTPLHVAACRDDAENVLDALTD--DPGSVGIEAWKSAQDSTGLTPNDYASLR 744
PN G TPLH+AA E V L+ DP +A+DS G TP A+
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP---------NAKDSDGKTPLHLAAEN 113
Query: 745 AHHSYIHLV--QRKINKKSSESGRVILDI 771
H + L+ Q S GR LD+
Sbjct: 114 GHKEVVKLLLSQGADPNTSDSDGRTPLDL 142
>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor
pdb|1YBW|B Chain B, Protease Domain Of Hgfa With No Inhibitor
pdb|1YC0|A Chain A, Short Form Hgfa With First Kunitz Domain From Hai-1
pdb|2R0K|A Chain A, Protease Domain Of Hgfa With Inhibitor Fab58
Length = 283
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 13/131 (9%)
Query: 142 VEKVPDLVSTGPEPSRPSTSACMTDNRIGFSEPMRSVGQCGTVPASDLLQKKISTNDAHS 201
V+ PDL++T PEP+ P AC ++ R +G ++P S I D+
Sbjct: 1 VQLSPDLLATLPEPASPGRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYIGDSFC 60
Query: 202 G-----RVQALSASQSIEMFPSRSSFSA--------KANEPEATFGRSKMSNIDLNNVYD 248
+SA+ P R S S + + TFG K L +V++
Sbjct: 61 AGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFN 120
Query: 249 DSQERVEHLEL 259
S + + L
Sbjct: 121 PSDHDLVLIRL 131
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 694 GLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLV 753
G TPLH AA ++ + ++ L V +A+DS G TP YA+ H + L+
Sbjct: 70 GRTPLHYAA-KEGHKEIVKLLISKGADV------NAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 754 QRK---INKKSSESGRVILDI 771
K +N S+ GR LD+
Sbjct: 123 ISKGADVNTSDSD-GRTPLDL 142
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 694 GLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLV 753
G TPLH AA ++ + ++ L V +A+DS G TP YA+ H + L+
Sbjct: 37 GRTPLHYAA-KEGHKEIVKLLISKGADV------NAKDSDGRTPLHYAAKEGHKEIVKLL 89
Query: 754 QRK---INKKSSESGRVIL 769
K +N K S+ GR L
Sbjct: 90 ISKGADVNAKDSD-GRTPL 107
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 694 GLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAH 746
G+TPLH+AA R E +++ L + V +A DS G TP A+ R H
Sbjct: 80 GVTPLHLAARRGHLE-IVEVLLKNGADV------NASDSHGFTPLHLAAKRGH 125
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 641 LHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPAGLTPLHV 700
LH A+ R C+ VELL+ D V + R Q D G F F G PL +
Sbjct: 95 LHIAIERRCKHYVELLVAQGAD-VHAQARGRFFQPKDEGGY-FYF--------GELPLSL 144
Query: 701 AACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLT 736
AAC + ++++ LT++P +A QDS G T
Sbjct: 145 AACTNQP-HIVNYLTENPHK---KADMRRQDSRGNT 176
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 688 NVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAH 746
N GLTPLH+AA E +++ L + V +A DS G+TP A+ H
Sbjct: 33 NATDDNGLTPLHLAAANGQLE-IVEVLLKNGADV------NASDSAGITPLHLAAYDGH 84
>pdb|1WX2|A Chain A, Crystal Structure Of The Oxy-Form Of The Copper-Bound
Streptomyces Castaneoglobisporus Tyrosinase Complexed
With A Caddie Protein Prepared By The Addition Of
Hydrogenperoxide
pdb|1WX4|A Chain A, Crystal Structure Of The Oxy-Form Of The Copper-Bound
Streptomyces Castaneoglobisporus Tyrosinase Complexed
With A Caddie Protein Prepared By The Addition Of
Dithiothreitol
pdb|1WX5|A Chain A, Crystal Structure Of The Copper-Free Streptomyces
Castaneoglobisporus Tyrosinase Complexed With A Caddie
Protein In The Monoclinic Crystal
pdb|1WX5|C Chain C, Crystal Structure Of The Copper-Free Streptomyces
Castaneoglobisporus Tyrosinase Complexed With A Caddie
Protein In The Monoclinic Crystal
pdb|1WXC|A Chain A, Crystal Structure Of The Copper-Free Streptomyces
Castaneoglobisporus Tyrosinase Complexed With A Caddie
Protein
pdb|2AHK|A Chain A, Crystal Structure Of The Met-Form Of The Copper-Bound
Streptomyces Castaneoglobisporus Tyrosinase In Complex
With A Caddie Protein Obtained By Soking In Cupric
Sulfate For 6 Months
pdb|2AHL|A Chain A, Crystal Structure Of The Hydroxylamine-Induced Deoxy-Form
Of The Copper-Bound Streptomyces Castaneoglobisporus
Tyrosinase In Complex With A Caddie Protein
pdb|2ZMX|A Chain A, Crystal Structure Of The Met1-Form Of The Copper-Bound
Tyrosinase In Complex With A Caddie Protein From
Streptomyces Castaneoglobisporus Obtained By Soaking In
Cupric Sulfate Solution For 36 Hours
pdb|2ZMY|A Chain A, Crystal Structure Of The Met2-Form Of The Copper-Bound
Tyrosinase In Complex With A Caddie Protein From
Streptomyces Castaneoglobisporus Obtained By Soaking In
Cupric Sulfate Solution For 80 Hours
pdb|2ZMZ|A Chain A, The 1.37-A Crystal Structure Of The Hydroxylamine-Induced
Deoxy-Form Of The Copper-Bound Tyrosinase In Complex
With A Caddie Protein From Streptomyces
Castaneoglobisporus
pdb|2ZWD|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen- Saturated Solution For 5 Minutes
pdb|2ZWE|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen-Saturated Solution For 40 Minutes
pdb|2ZWF|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen-Saturated Solution For 80 Minutes
pdb|2ZWG|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen-Saturated Solution For 12 Hours
pdb|3AWS|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
20 Hr: Occupancy Of Cu(Ii) Is Low
pdb|3AWT|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
20 Hr: Occupancy Of Cu(Ii) Is High
pdb|3AWU|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
40 H
pdb|3AWV|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
80 Hr: Occupancy Of Cua Is Low
pdb|3AWW|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
80 Hr: Occupancy Of Cua Is High
pdb|3AWX|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie H82q Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
pdb|3AWY|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie M84l Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
pdb|3AWZ|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie H97q Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
pdb|3AX0|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Y98f Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
Length = 281
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 723 IEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQ 782
+ W Q +TG++PND HH+Y+ + + ++ +S V +VD +
Sbjct: 193 VHVWVGGQMATGVSPND-PVFWLHHAYVDKLWAEWQRRHPDSAYVPTGGTPDVVDLNETM 251
Query: 783 KPLKGNKSSRVL 794
KP + + +L
Sbjct: 252 KPWNTVRPADLL 263
>pdb|1SBP|A Chain A, 1.7 Angstroms Refined Structure Of Sulfate-Binding Protein
Involved In Active Transport And Novel Mode Of Sulfate
Binding
Length = 310
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 89 MHSNNSDQTKDQDLLSHLFRNL----AGVVGTSNV 119
+H NN+DQ K +D + LF+N+ +G G++N
Sbjct: 145 LHHNNNDQAKAEDFVKALFKNVEVLDSGARGSTNT 179
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 688 NVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAH 746
N + GLTPLH+AA E +++ L V +A+D+ G+TP A++R H
Sbjct: 41 NALDEDGLTPLHLAAQLGHLE-IVEVLLKYGADV------NAEDNFGITPLHLAAIRGH 92
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 641 LHKAVRRNCRPMVELLL-NYAPDNVLDKPGSRQKQLVDRAGSGFIFK--------PNVIG 691
LH A R + + LL N A N K R G + K PN+
Sbjct: 51 LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110
Query: 692 PAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYAS 742
AG TPLH+AA E VL L EA ++ G TP A+
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEK-------EASQACMTKKGFTPLHVAA 154
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 688 NVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAH 746
N + AG+TPLH+AA R E +++ L V +A DS G TP A+ H
Sbjct: 41 NAMDDAGVTPLHLAAKRGHLE-IVEVLLKHGADV------NASDSWGRTPLHLAATVGH 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,082,755
Number of Sequences: 62578
Number of extensions: 919913
Number of successful extensions: 1716
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1690
Number of HSP's gapped (non-prelim): 27
length of query: 872
length of database: 14,973,337
effective HSP length: 107
effective length of query: 765
effective length of database: 8,277,491
effective search space: 6332280615
effective search space used: 6332280615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)