Query 002869
Match_columns 872
No_of_seqs 424 out of 1745
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 12:26:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 2E-88 4.3E-93 702.1 22.0 229 337-602 1-229 (229)
2 PF01852 START: START domain; 99.7 4.5E-17 9.8E-22 164.3 14.5 203 342-603 1-206 (206)
3 smart00234 START in StAR and p 99.7 1.8E-15 3.9E-20 153.1 18.8 197 343-602 2-205 (206)
4 KOG0842 Transcription factor t 99.6 2.1E-16 4.6E-21 170.6 7.6 68 130-197 149-216 (307)
5 KOG0483 Transcription factor H 99.6 4.3E-16 9.2E-21 159.9 5.4 80 138-217 54-133 (198)
6 KOG0488 Transcription factor B 99.6 7.7E-16 1.7E-20 167.8 5.1 66 130-195 168-233 (309)
7 KOG0485 Transcription factor N 99.6 1.6E-15 3.6E-20 154.9 7.0 66 130-195 100-165 (268)
8 KOG0850 Transcription factor D 99.5 3.7E-15 8.1E-20 153.8 4.6 74 125-198 113-186 (245)
9 KOG0843 Transcription factor E 99.5 3.6E-15 7.9E-20 149.1 4.1 65 133-197 101-165 (197)
10 KOG0487 Transcription factor A 99.5 1.1E-14 2.4E-19 157.4 7.9 65 131-195 232-296 (308)
11 KOG0489 Transcription factor z 99.5 2.1E-15 4.5E-20 161.1 2.1 65 132-196 157-221 (261)
12 KOG0494 Transcription factor C 99.5 6.9E-15 1.5E-19 153.4 5.2 69 138-206 145-213 (332)
13 KOG0484 Transcription factor P 99.5 2.1E-15 4.5E-20 139.0 0.9 65 131-195 14-78 (125)
14 KOG0848 Transcription factor C 99.5 1E-13 2.2E-18 145.5 10.4 67 130-196 195-261 (317)
15 KOG0492 Transcription factor M 99.4 6.8E-14 1.5E-18 142.4 5.9 65 131-195 141-205 (246)
16 KOG2251 Homeobox transcription 99.4 7.1E-14 1.5E-18 143.9 4.7 68 129-196 32-99 (228)
17 PF00046 Homeobox: Homeobox do 99.4 8.8E-14 1.9E-18 114.9 2.5 57 135-191 1-57 (57)
18 KOG0493 Transcription factor E 99.3 8.9E-13 1.9E-17 137.9 4.4 59 135-193 247-305 (342)
19 smart00389 HOX Homeodomain. DN 99.2 4.3E-12 9.3E-17 103.9 2.7 56 135-190 1-56 (56)
20 COG5576 Homeodomain-containing 99.2 6.5E-12 1.4E-16 125.2 4.2 65 133-197 50-114 (156)
21 cd00086 homeodomain Homeodomai 99.2 5.5E-12 1.2E-16 103.8 2.9 57 136-192 2-58 (59)
22 TIGR01565 homeo_ZF_HD homeobox 99.2 1.5E-11 3.3E-16 103.8 5.6 53 134-186 1-57 (58)
23 KOG0486 Transcription factor P 99.2 1.4E-11 3.1E-16 132.1 6.7 64 131-194 109-172 (351)
24 KOG0844 Transcription factor E 99.2 6.6E-12 1.4E-16 133.8 4.1 65 131-195 178-242 (408)
25 KOG0491 Transcription factor B 99.2 1.6E-12 3.5E-17 128.5 -1.3 66 132-197 98-163 (194)
26 KOG4577 Transcription factor L 99.2 2E-11 4.3E-16 129.4 5.6 76 133-208 166-241 (383)
27 cd00177 START Lipid-binding ST 99.2 6.8E-10 1.5E-14 109.5 15.6 187 346-600 2-191 (193)
28 KOG3802 Transcription factor O 99.1 5.6E-11 1.2E-15 131.5 5.0 63 131-193 291-353 (398)
29 KOG0847 Transcription factor, 99.1 2.9E-11 6.3E-16 124.2 1.7 66 130-195 163-228 (288)
30 cd08871 START_STARD10-like Lip 99.0 1.9E-08 4.2E-13 104.5 18.8 200 346-614 10-213 (222)
31 KOG0490 Transcription factor, 98.9 9.4E-10 2E-14 113.4 5.5 64 131-194 57-120 (235)
32 cd08867 START_STARD4_5_6-like 98.9 6.2E-08 1.3E-12 99.7 17.8 195 340-601 3-205 (206)
33 cd08868 START_STARD1_3_like Ch 98.9 6.6E-08 1.4E-12 99.6 17.1 196 340-604 6-208 (208)
34 cd08904 START_STARD6-like Lipi 98.7 2.8E-07 6.1E-12 95.9 14.9 172 340-572 3-178 (204)
35 KOG0849 Transcription factor P 98.6 1.5E-08 3.2E-13 113.2 3.5 64 131-194 173-236 (354)
36 cd08903 START_STARD5-like Lipi 98.5 4.2E-06 9.1E-11 87.0 17.1 193 340-601 3-205 (208)
37 KOG1168 Transcription factor A 98.4 1.4E-07 2.9E-12 100.9 4.2 62 132-193 307-368 (385)
38 cd08909 START_STARD13-like C-t 98.4 8.6E-06 1.9E-10 85.1 16.8 129 393-572 48-178 (205)
39 cd08869 START_RhoGAP C-termina 98.4 8.6E-06 1.9E-10 83.9 15.2 167 345-576 4-173 (197)
40 PLN00188 enhanced disease resi 98.3 8.2E-06 1.8E-10 97.2 14.4 129 397-574 227-365 (719)
41 cd08905 START_STARD1-like Chol 98.3 1.4E-05 3.1E-10 83.1 14.2 193 339-602 5-207 (209)
42 KOG0775 Transcription factor S 98.2 1.2E-06 2.6E-11 93.5 3.4 50 141-190 183-232 (304)
43 cd08906 START_STARD3-like Chol 98.2 6.4E-05 1.4E-09 78.5 16.1 196 339-602 5-207 (209)
44 cd08902 START_STARD4-like Lipi 98.1 7E-05 1.5E-09 78.0 14.5 191 340-600 3-200 (202)
45 cd08910 START_STARD2-like Lipi 98.0 0.00013 2.8E-09 76.0 14.4 183 352-603 17-206 (207)
46 cd08877 START_2 Uncharacterize 97.8 0.00058 1.2E-08 71.0 15.4 200 340-602 3-213 (215)
47 cd08908 START_STARD12-like C-t 97.7 0.00064 1.4E-08 71.2 13.6 162 344-570 11-175 (204)
48 cd08876 START_1 Uncharacterize 97.7 0.00098 2.1E-08 67.5 14.6 152 398-601 42-194 (195)
49 KOG0774 Transcription factor P 97.7 2.5E-05 5.4E-10 83.1 2.9 60 135-194 189-251 (334)
50 cd08874 START_STARD9-like C-te 97.5 0.0012 2.6E-08 69.1 12.2 131 390-575 43-181 (205)
51 KOG0490 Transcription factor, 97.5 0.0001 2.2E-09 76.3 4.1 64 131-194 150-213 (235)
52 cd08907 START_STARD8-like C-te 97.4 0.0009 2E-08 70.0 10.8 166 344-572 11-178 (205)
53 KOG2252 CCAAT displacement pro 97.4 7.5E-05 1.6E-09 86.4 3.0 61 130-190 416-476 (558)
54 PF05920 Homeobox_KN: Homeobox 97.4 2.9E-05 6.3E-10 61.3 -0.5 34 155-188 7-40 (40)
55 cd08870 START_STARD2_7-like Li 97.4 0.0059 1.3E-07 63.5 15.8 152 397-603 50-208 (209)
56 cd08872 START_STARD11-like Cer 97.1 0.017 3.6E-07 61.8 16.2 193 345-602 9-225 (235)
57 cd08911 START_STARD7-like Lipi 97.0 0.015 3.2E-07 60.7 14.0 152 398-603 46-206 (207)
58 cd08871 START_STARD10-like Lip 96.9 0.071 1.5E-06 55.8 18.1 175 647-869 21-201 (222)
59 KOG1146 Homeobox protein [Gene 96.3 0.0041 8.9E-08 78.3 5.4 61 134-194 903-963 (1406)
60 cd08869 START_RhoGAP C-termina 96.3 0.18 3.8E-06 52.3 16.7 174 647-870 17-196 (197)
61 cd08873 START_STARD14_15-like 96.3 0.037 7.9E-07 59.4 11.9 122 393-568 78-203 (235)
62 cd08904 START_STARD6-like Lipi 96.2 0.22 4.8E-06 52.4 16.7 174 648-868 21-203 (204)
63 cd08907 START_STARD8-like C-te 96.2 0.38 8.2E-06 50.9 18.0 174 646-869 24-203 (205)
64 cd08913 START_STARD14-like Lip 95.6 0.15 3.2E-06 55.0 12.5 126 402-577 86-215 (240)
65 cd08874 START_STARD9-like C-te 95.4 0.21 4.6E-06 52.5 12.7 130 646-799 19-157 (205)
66 cd08877 START_2 Uncharacterize 95.1 1.2 2.6E-05 46.5 17.2 117 635-768 10-129 (215)
67 cd08914 START_STARD15-like Lip 95.1 0.2 4.3E-06 54.0 11.3 129 398-577 79-211 (236)
68 cd08876 START_1 Uncharacterize 95.0 1.8 4E-05 43.8 17.7 59 646-713 14-72 (195)
69 cd00177 START Lipid-binding ST 94.9 1.5 3.3E-05 43.2 16.7 147 649-838 15-165 (193)
70 cd08868 START_STARD1_3_like Ch 94.8 1.6 3.4E-05 45.4 17.0 133 648-801 23-162 (208)
71 cd08870 START_STARD2_7-like Li 94.6 1.4 3E-05 46.0 15.8 106 649-768 22-133 (209)
72 cd08867 START_STARD4_5_6-like 94.5 3.9 8.5E-05 42.4 18.9 146 629-800 8-161 (206)
73 smart00234 START in StAR and p 94.3 2.6 5.5E-05 43.0 16.9 135 648-800 18-158 (206)
74 cd08903 START_STARD5-like Lipi 94.2 1.6 3.4E-05 45.7 15.4 178 647-869 20-206 (208)
75 KOG0773 Transcription factor M 94.0 0.077 1.7E-06 59.2 5.5 61 134-194 239-302 (342)
76 cd08906 START_STARD3-like Chol 93.8 4.7 0.0001 42.4 18.0 130 648-798 24-160 (209)
77 cd08873 START_STARD14_15-like 93.7 0.64 1.4E-05 50.1 11.5 66 647-725 53-118 (235)
78 cd08908 START_STARD12-like C-t 93.1 4.9 0.00011 42.6 16.8 172 650-869 28-202 (204)
79 cd08911 START_STARD7-like Lipi 93.1 2.7 5.8E-05 44.0 14.8 180 647-869 19-205 (207)
80 cd08914 START_STARD15-like Lip 93.1 0.68 1.5E-05 50.0 10.5 58 646-714 53-110 (236)
81 PF11569 Homez: Homeodomain le 92.1 0.032 6.9E-07 47.5 -0.8 42 145-186 9-50 (56)
82 PF01852 START: START domain; 91.1 6.5 0.00014 39.9 14.6 151 631-800 2-158 (206)
83 KOG4196 bZIP transcription fac 89.6 1.9 4E-05 42.7 8.5 86 139-258 22-108 (135)
84 cd08875 START_ArGLABRA2_like C 89.1 11 0.00023 40.9 14.6 186 628-845 4-204 (229)
85 cd08909 START_STARD13-like C-t 88.2 31 0.00066 36.7 17.2 174 649-869 27-203 (205)
86 cd08913 START_STARD14-like Lip 86.7 5 0.00011 43.5 10.5 58 646-714 56-113 (240)
87 cd05018 CoxG Carbon monoxide d 86.7 12 0.00025 35.2 11.9 35 402-440 6-40 (144)
88 KOG4005 Transcription factor X 86.5 3.4 7.3E-05 44.6 8.8 60 183-256 82-143 (292)
89 PRK09413 IS2 repressor TnpA; R 86.0 1.9 4E-05 41.6 6.2 40 139-183 11-51 (121)
90 cd08866 SRPBCC_11 Ligand-bindi 85.6 15 0.00031 35.0 12.1 48 551-602 95-143 (144)
91 cd08905 START_STARD1-like Chol 85.4 48 0.001 34.8 16.8 195 628-869 6-207 (209)
92 cd08910 START_STARD2-like Lipi 85.2 1.5 3.2E-05 46.0 5.5 93 646-755 22-116 (207)
93 cd08860 TcmN_ARO-CYC_like N-te 85.0 21 0.00046 35.3 13.3 39 401-443 5-43 (146)
94 cd07819 SRPBCC_2 Ligand-bindin 82.6 27 0.00058 32.6 12.3 39 401-443 6-44 (140)
95 KOG3623 Homeobox transcription 80.0 0.83 1.8E-05 55.5 1.4 47 146-192 568-614 (1007)
96 cd07813 COQ10p_like Coenzyme Q 79.9 25 0.00055 33.4 11.3 52 548-603 86-137 (138)
97 cd08864 SRPBCC_DUF3074 DUF3074 79.9 15 0.00032 39.0 10.5 85 490-576 94-184 (208)
98 KOG2761 START domain-containin 77.2 22 0.00048 38.3 10.7 111 406-566 63-183 (219)
99 cd08872 START_STARD11-like Cer 77.2 42 0.00092 36.2 13.1 99 645-757 22-123 (235)
100 PRK15422 septal ring assembly 75.8 9.8 0.00021 34.8 6.6 61 190-264 12-76 (79)
101 cd08902 START_STARD4-like Lipi 75.3 5.9 0.00013 42.1 5.9 61 646-715 20-80 (202)
102 cd08861 OtcD1_ARO-CYC_like N-t 74.0 32 0.00069 32.5 10.2 27 402-428 4-30 (142)
103 PF04218 CENP-B_N: CENP-B N-te 73.6 2.1 4.6E-05 35.8 1.7 46 135-185 1-46 (53)
104 PF02183 HALZ: Homeobox associ 72.7 7 0.00015 32.1 4.5 25 193-217 2-26 (45)
105 PF06005 DUF904: Protein of un 72.4 12 0.00026 33.6 6.3 49 194-263 16-68 (72)
106 PRK10724 hypothetical protein; 68.1 1.2E+02 0.0027 30.6 13.3 137 400-604 18-154 (158)
107 TIGR00219 mreC rod shape-deter 68.1 7.2 0.00016 43.1 4.9 42 197-255 67-108 (283)
108 COG3074 Uncharacterized protei 67.0 19 0.00042 32.4 6.2 56 195-264 17-76 (79)
109 cd07817 SRPBCC_8 Ligand-bindin 66.4 1.1E+02 0.0024 28.4 13.5 52 551-602 87-138 (139)
110 PF10604 Polyketide_cyc2: Poly 65.7 1.1E+02 0.0024 28.1 14.0 35 402-440 7-41 (139)
111 PF12711 Kinesin-relat_1: Kine 65.3 14 0.0003 34.5 5.3 47 200-261 21-67 (86)
112 PRK13922 rod shape-determining 62.0 11 0.00024 40.9 4.9 39 198-254 71-109 (276)
113 KOG4343 bZIP transcription fac 59.4 20 0.00043 43.0 6.4 19 239-257 317-335 (655)
114 PLN00188 enhanced disease resi 58.2 37 0.0008 42.2 8.7 158 646-838 195-361 (719)
115 cd08865 SRPBCC_10 Ligand-bindi 57.1 1.5E+02 0.0033 27.1 11.0 37 402-442 4-40 (140)
116 TIGR03752 conj_TIGR03752 integ 53.4 21 0.00046 42.3 5.5 57 194-263 78-134 (472)
117 PF01527 HTH_Tnp_1: Transposas 50.5 2.1 4.5E-05 37.0 -2.5 43 136-182 2-44 (76)
118 KOG0971 Microtubule-associated 49.6 49 0.0011 42.1 7.8 56 200-261 336-391 (1243)
119 KOG1146 Homeobox protein [Gene 48.5 24 0.00052 46.3 5.2 62 134-195 444-505 (1406)
120 KOG4571 Activating transcripti 48.1 52 0.0011 36.9 7.1 46 191-257 243-288 (294)
121 PF02183 HALZ: Homeobox associ 46.8 51 0.0011 27.1 5.2 40 200-260 2-41 (45)
122 PF04880 NUDE_C: NUDE protein, 46.8 18 0.00038 37.5 3.1 20 239-258 25-44 (166)
123 smart00338 BRLZ basic region l 45.9 78 0.0017 27.2 6.5 39 195-254 25-63 (65)
124 cd07821 PYR_PYL_RCAR_like Pyra 45.8 41 0.00088 31.1 5.2 50 549-602 91-140 (140)
125 smart00340 HALZ homeobox assoc 43.9 24 0.00053 28.8 2.8 20 241-260 15-34 (44)
126 PF14389 Lzipper-MIP1: Leucine 43.8 1.4E+02 0.0031 27.6 8.3 72 186-260 5-76 (88)
127 cd07824 SRPBCC_6 Ligand-bindin 41.4 2.3E+02 0.0051 27.3 9.9 32 405-440 9-40 (146)
128 COG4026 Uncharacterized protei 40.7 62 0.0013 35.2 6.0 49 188-257 141-189 (290)
129 PF00170 bZIP_1: bZIP transcri 40.2 1.1E+02 0.0024 26.2 6.6 23 195-217 25-47 (64)
130 COG1792 MreC Cell shape-determ 38.5 66 0.0014 35.8 6.2 15 393-407 158-172 (284)
131 PF06156 DUF972: Protein of un 38.5 55 0.0012 31.6 4.8 21 239-259 37-57 (107)
132 KOG3119 Basic region leucine z 37.7 78 0.0017 35.0 6.6 25 239-263 230-254 (269)
133 cd07823 SRPBCC_5 Ligand-bindin 37.5 17 0.00036 35.3 1.2 26 686-711 3-28 (146)
134 PRK14872 rod shape-determining 37.1 31 0.00066 39.5 3.4 41 197-255 58-98 (337)
135 cd07822 SRPBCC_4 Ligand-bindin 36.5 57 0.0012 30.1 4.6 50 550-602 92-141 (141)
136 PF07407 Seadorna_VP6: Seadorn 33.7 52 0.0011 37.5 4.3 21 197-217 33-53 (420)
137 cd07823 SRPBCC_5 Ligand-bindin 32.8 4.6E+02 0.0099 25.3 11.6 29 401-429 3-31 (146)
138 PRK06266 transcription initiat 31.8 50 0.0011 34.3 3.7 35 221-255 136-170 (178)
139 PRK13169 DNA replication intia 31.2 94 0.002 30.3 5.1 19 239-257 37-55 (110)
140 cd07819 SRPBCC_2 Ligand-bindin 31.1 38 0.00082 31.5 2.5 29 684-712 4-32 (140)
141 KOG4403 Cell surface glycoprot 31.1 1.3E+02 0.0028 35.6 7.0 22 344-365 402-423 (575)
142 cd07818 SRPBCC_1 Ligand-bindin 31.0 68 0.0015 30.7 4.3 51 551-602 99-149 (150)
143 cd08865 SRPBCC_10 Ligand-bindi 30.8 31 0.00068 31.7 1.9 28 685-712 2-29 (140)
144 PF10604 Polyketide_cyc2: Poly 30.7 48 0.001 30.6 3.1 28 685-712 5-32 (139)
145 cd07821 PYR_PYL_RCAR_like Pyra 29.6 41 0.00088 31.1 2.4 27 685-711 4-30 (140)
146 cd05018 CoxG Carbon monoxide d 29.4 30 0.00064 32.4 1.5 27 686-712 5-31 (144)
147 PF14197 Cep57_CLD_2: Centroso 29.3 1.5E+02 0.0032 26.5 5.7 19 239-257 48-66 (69)
148 TIGR00219 mreC rod shape-deter 29.0 1.7E+02 0.0038 32.5 7.5 44 201-261 64-107 (283)
149 PRK00888 ftsB cell division pr 28.8 1.3E+02 0.0029 28.7 5.7 40 177-217 16-55 (105)
150 KOG0709 CREB/ATF family transc 28.8 2.3E+02 0.005 33.9 8.6 97 138-262 218-317 (472)
151 PF15058 Speriolin_N: Sperioli 28.1 85 0.0018 33.4 4.6 39 199-259 8-46 (200)
152 PF06785 UPF0242: Uncharacteri 28.0 85 0.0018 36.0 4.8 71 181-263 54-124 (401)
153 cd08901 SRPBCC_CalC_Aha1-like_ 27.9 37 0.00081 32.6 1.9 27 684-710 2-28 (136)
154 cd07817 SRPBCC_8 Ligand-bindin 27.7 44 0.00096 31.1 2.3 28 685-712 3-30 (139)
155 cd08866 SRPBCC_11 Ligand-bindi 27.4 40 0.00087 31.9 2.0 28 685-712 2-29 (144)
156 PRK03975 tfx putative transcri 26.7 51 0.0011 33.3 2.6 47 139-191 5-51 (141)
157 TIGR03752 conj_TIGR03752 integ 26.1 1.6E+02 0.0034 35.4 6.7 12 140-151 41-52 (472)
158 PRK10884 SH3 domain-containing 26.0 5.4E+02 0.012 27.6 10.2 19 201-219 130-148 (206)
159 cd07814 SRPBCC_CalC_Aha1-like 26.0 42 0.0009 31.2 1.8 28 685-712 3-30 (139)
160 KOG0288 WD40 repeat protein Ti 25.6 1.7E+02 0.0036 34.6 6.7 25 540-565 324-348 (459)
161 cd07825 SRPBCC_7 Ligand-bindin 25.4 51 0.0011 31.2 2.3 26 686-711 4-29 (144)
162 cd08862 SRPBCC_Smu440-like Lig 25.3 52 0.0011 30.6 2.3 30 683-712 2-31 (138)
163 PF04967 HTH_10: HTH DNA bindi 25.2 75 0.0016 27.0 3.0 37 141-177 1-39 (53)
164 cd07812 SRPBCC START/RHO_alpha 25.0 50 0.0011 29.2 2.0 27 686-712 3-29 (141)
165 PRK13729 conjugal transfer pil 25.0 1.7E+02 0.0037 35.0 6.8 56 186-255 66-121 (475)
166 KOG2761 START domain-containin 25.0 35 0.00076 36.8 1.2 182 645-869 25-213 (219)
167 cd07812 SRPBCC START/RHO_alpha 24.8 4.7E+02 0.01 22.9 8.8 28 402-429 4-31 (141)
168 TIGR02449 conserved hypothetic 24.2 2.9E+02 0.0062 24.7 6.4 38 200-258 11-48 (65)
169 cd07818 SRPBCC_1 Ligand-bindin 23.0 1.5E+02 0.0032 28.3 5.0 32 684-715 4-35 (150)
170 cd06171 Sigma70_r4 Sigma70, re 22.8 24 0.00051 27.1 -0.4 42 140-186 10-51 (55)
171 PF15392 Joubert: Joubert synd 22.2 5.6E+02 0.012 29.4 9.7 34 393-426 240-276 (329)
172 PF12824 MRP-L20: Mitochondria 21.8 1.5E+02 0.0032 30.7 4.9 46 139-186 84-129 (164)
173 KOG3755 SATB1 matrix attachmen 21.2 20 0.00044 43.4 -1.6 45 150-194 708-759 (769)
174 COG1675 TFA1 Transcription ini 21.1 88 0.0019 32.8 3.2 44 215-258 125-169 (176)
175 PRK13922 rod shape-determining 20.8 1.6E+02 0.0034 32.1 5.2 47 197-261 63-109 (276)
176 PRK00888 ftsB cell division pr 20.2 1.2E+02 0.0025 29.1 3.5 36 181-216 26-61 (105)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=2e-88 Score=702.08 Aligned_cols=229 Identities=61% Similarity=1.029 Sum_probs=221.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHHHHh
Q 002869 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (872)
Q Consensus 337 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LVe~l 416 (872)
|++|+|||++||+||++|||+++|||+++.+++ +|+||+|||.++|++..|.++.||++|||||||+|+||+.+|||+|
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~-~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~l 79 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMK-PEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEIL 79 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCC-ccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence 578999999999999999999999999998777 7999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEee
Q 002869 417 MDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQV 496 (872)
Q Consensus 417 mD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~~ 496 (872)
||+++|.+|||+||++|+|++||++|++|+|||+||| ||+|||+
T Consensus 80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lql------------------------------------myael~~ 123 (229)
T cd08875 80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQL------------------------------------MYAELQV 123 (229)
T ss_pred hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehh------------------------------------hhhhccc
Confidence 9999999999999999999999999999999999999 9999999
Q ss_pred ccccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccc
Q 002869 497 LSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQ 576 (872)
Q Consensus 497 ~SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~ 576 (872)
||||||+|||||||||||++||+|||||||+|..+..+..+.++||||+|||||||||+|||||||||||+|||++.+|.
T Consensus 124 pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~ 203 (229)
T cd08875 124 PSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHL 203 (229)
T ss_pred CcccccCCeEEEEEEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccc
Confidence 99999999999999999999999999999999886444445689999999999999999999999999999999999999
Q ss_pred cchhhhccchhHHHHHHHHHHHHHHH
Q 002869 577 LYKPLIISGMGFGAQRWVATLQRQCE 602 (872)
Q Consensus 577 l~rpl~~Sg~afGA~rw~atLqR~ce 602 (872)
+||+++.||+||||+||+++||||||
T Consensus 204 l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 204 LYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999997
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.73 E-value=4.5e-17 Score=164.28 Aligned_cols=203 Identities=23% Similarity=0.350 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHhhcCCCCceeecc--CCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHHHHhcCh
Q 002869 342 ELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (872)
Q Consensus 342 ~lA~~Am~El~~la~~~eplWi~~~--~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LVe~lmD~ 419 (872)
|+|+++|.+++++++.++.-|.... ++. +.|.+..++. .+..+..-|..++|...+.++++.|+|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~~~~-----~~~~~~~~k~~~~v~~~~~~~~~~~~~~ 68 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNG-------DVYYKKVSPS-----DSCPIKMFKAEGVVPASPEQVVEDLLDD 68 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTT-------CEEEEEEECS-----SSTSCEEEEEEEEESSCHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCC-------eEEEEEeCcc-----ccccceEEEEEEEEcCChHHHHHHHHhh
Confidence 6899999999999999999999875 332 1222222111 1246678899999999999999999998
Q ss_pred h-hhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEeecc
Q 002869 420 N-RWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQVLS 498 (872)
Q Consensus 420 ~-~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~~~S 498 (872)
. +|-.++- .+..++.++.+ ..|.. ++.++..++
T Consensus 69 ~~~Wd~~~~----~~~~le~~~~~------~~i~~------------------------------------~~~~~~~~~ 102 (206)
T PF01852_consen 69 REQWDKMCV----EAEVLEQIDED------TDIVY------------------------------------FVMKSPWPG 102 (206)
T ss_dssp GGHHSTTEE----EEEEEEEEETT------EEEEE------------------------------------EEEE-CTTT
T ss_pred Hhhcccchh----hheeeeecCCC------CeEEE------------------------------------EEecccCCC
Confidence 8 9999973 56788888755 35555 778888888
Q ss_pred ccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccc
Q 002869 499 PLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLY 578 (872)
Q Consensus 499 pLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~ 578 (872)
|+.| |||.++|++++.++|.|+|+..|++.-...+..+.++|+..++||++|++.++|.|+||+|-|++..-+...-++
T Consensus 103 p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP~~~~ 181 (206)
T PF01852_consen 103 PVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIPSWLV 181 (206)
T ss_dssp TSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSHHHHH
T ss_pred CCCC-cEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCChHHHH
Confidence 9999 999999999999999999999999865443323468999999999999999999999999999999999999999
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHH
Q 002869 579 KPLIISGMGFGAQRWVATLQRQCEC 603 (872)
Q Consensus 579 rpl~~Sg~afGA~rw~atLqR~ce~ 603 (872)
+.++.+.+.--++.+.+.|++|+++
T Consensus 182 n~~~~~~~~~~~~~~~~~~~~~~~~ 206 (206)
T PF01852_consen 182 NMVVKSQPPNFLKNLRKALKKQKKC 206 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCT-
T ss_pred HHHHHHhHHHHHHHHHHHHHHhccC
Confidence 9999999998899999999888763
No 3
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.68 E-value=1.8e-15 Score=153.13 Aligned_cols=197 Identities=36% Similarity=0.567 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHhhcCCCCceeeccC--CCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhH-HHHHhcCh
Q 002869 343 LALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLA-LVETLMDP 419 (872)
Q Consensus 343 lA~~Am~El~~la~~~eplWi~~~~--~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~-LVe~lmD~ 419 (872)
-|+.++.|+++++..++..|....+ .+ ..|.+.+ .+.+....+-|..++|...+.+ ++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~------~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~ 68 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENG-------DEVRSIL------SPGRSPGEASRAVGVVPMVCADLVEELMDDL 68 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCc-------ceEEEEc------cCCCCceEEEEEEEEEecChHHHHHHHHhcc
Confidence 3678899999999999999998764 22 1111111 1223567899999999999997 55667665
Q ss_pred ---hhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEee
Q 002869 420 ---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQV 496 (872)
Q Consensus 420 ---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~~ 496 (872)
.+|-.. +..++.++.++.+. .+ +|.-+..
T Consensus 69 ~~r~~Wd~~----~~~~~~ie~~~~~~--------~i------------------------------------~~~~~~~ 100 (206)
T smart00234 69 RYRPEWDKN----VAKAETLEVIDNGT--------VI------------------------------------YHYVSKF 100 (206)
T ss_pred cchhhCchh----cccEEEEEEECCCC--------eE------------------------------------EEEEEec
Confidence 445544 45678888886432 33 2322233
Q ss_pred c-cccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeecccccc
Q 002869 497 L-SPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVH 575 (872)
Q Consensus 497 ~-SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~ 575 (872)
+ +| +..|||.++|++++.++|.|+|+..|++.-.. +..+.++|+..++||++|+++++|.|+|||+.|++..-+..+
T Consensus 101 ~~~p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~ 178 (206)
T smart00234 101 VAGP-VSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-PPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPH 178 (206)
T ss_pred ccCc-CCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-CCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccc
Confidence 3 35 55699999999999999999999999986432 222468999999999999999999999999999999999888
Q ss_pred ccchhhhccchhHHHHHHHHHHHHHHH
Q 002869 576 QLYKPLIISGMGFGAQRWVATLQRQCE 602 (872)
Q Consensus 576 ~l~rpl~~Sg~afGA~rw~atLqR~ce 602 (872)
-+.+.++.++....+++|.+.|+++|+
T Consensus 179 ~lvn~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T smart00234 179 WLVRSLIKSGLAEFAKTWVATLQKHCA 205 (206)
T ss_pred eeehhhhhhhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999997
No 4
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.64 E-value=2.1e-16 Score=170.56 Aligned_cols=68 Identities=32% Similarity=0.446 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHHh
Q 002869 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (872)
Q Consensus 130 ~~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~e 197 (872)
...+|||+|.-|+..|+.+||+.|+.++|++..+|++||+.|+|++.||||||||||-|.||+++.++
T Consensus 149 ~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~ 216 (307)
T KOG0842|consen 149 GKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKA 216 (307)
T ss_pred ccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhh
Confidence 35667778888999999999999999999999999999999999999999999999999999877654
No 5
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.61 E-value=4.3e-16 Score=159.87 Aligned_cols=80 Identities=33% Similarity=0.508 Sum_probs=74.3
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHHhhhhhHHHhHHHHHhhhhHHh
Q 002869 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (872)
Q Consensus 138 RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~e~~~L~qenekL~~En~~l~e 217 (872)
+.|+|.+|+..||+.|+...+....++..||++|||.+|||++||||||||||.++...++..|+.+++.|+.+|..+..
T Consensus 54 k~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~ 133 (198)
T KOG0483|consen 54 KRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQS 133 (198)
T ss_pred cccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999888665543
No 6
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.58 E-value=7.7e-16 Score=167.80 Aligned_cols=66 Identities=36% Similarity=0.473 Sum_probs=62.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 130 ~~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
..+|+||.|+.||..|+.+||+.|++.+|.+..+|.+||++|||+..|||+||||||+||||+...
T Consensus 168 ~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 168 TPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 447778889999999999999999999999999999999999999999999999999999987765
No 7
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.58 E-value=1.6e-15 Score=154.86 Aligned_cols=66 Identities=33% Similarity=0.427 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 130 ~~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
.+.+|||.|+.|+..|+..||..|+..+|.+..+|..||++|.|++.||||||||||.||||+...
T Consensus 100 g~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aa 165 (268)
T KOG0485|consen 100 GDDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAA 165 (268)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhh
Confidence 345788899999999999999999999999999999999999999999999999999999987654
No 8
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.54 E-value=3.7e-15 Score=153.79 Aligned_cols=74 Identities=27% Similarity=0.352 Sum_probs=66.9
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHHhh
Q 002869 125 DLDAADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHEN 198 (872)
Q Consensus 125 ~~~~~~~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~e~ 198 (872)
....++.+|.||.||.++.-||+.|.+.|++++|+-..+|.+||.+|||+..||||||||||.|.||.++..+.
T Consensus 113 ~~~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g~~ 186 (245)
T KOG0850|consen 113 RRPNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQGSG 186 (245)
T ss_pred eccCCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcCCC
Confidence 34455677789999999999999999999999999999999999999999999999999999999998875543
No 9
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.53 E-value=3.6e-15 Score=149.05 Aligned_cols=65 Identities=34% Similarity=0.478 Sum_probs=61.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHHh
Q 002869 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (872)
Q Consensus 133 kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~e 197 (872)
|.||.||.||.+|+..||..|+.++|-...+|++||+.|+|++.||||||||||+|.||++.+.+
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~k 165 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQEDK 165 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHhh
Confidence 66888999999999999999999999999999999999999999999999999999999887753
No 10
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.53 E-value=1.1e-14 Score=157.44 Aligned_cols=65 Identities=38% Similarity=0.436 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
.++.||||..+|+.|+.+||+.|-.|.|.+.+.|.||++.|+|++|||||||||||.|+||..++
T Consensus 232 ~~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re 296 (308)
T KOG0487|consen 232 ARRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRE 296 (308)
T ss_pred ccccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhh
Confidence 35568888899999999999999999999999999999999999999999999999999997754
No 11
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.53 E-value=2.1e-15 Score=161.10 Aligned_cols=65 Identities=34% Similarity=0.475 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~ 196 (872)
.+.||.|+.||..|+.+||+.|+.++|.++..|.|+|..|.|+++||||||||||+||||..+..
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~ 221 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAK 221 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Confidence 45788899999999999999999999999999999999999999999999999999999866553
No 12
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.52 E-value=6.9e-15 Score=153.44 Aligned_cols=69 Identities=32% Similarity=0.451 Sum_probs=64.8
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHHhhhhhHHHhH
Q 002869 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEND 206 (872)
Q Consensus 138 RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~e~~~L~qene 206 (872)
|+.||..|+++||+.|++.+|||...|+-||-++.|.+.+|+|||||||+||||++++.......+|+.
T Consensus 145 RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~maeyg 213 (332)
T KOG0494|consen 145 RTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTIMAEYG 213 (332)
T ss_pred cchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchhhhhhc
Confidence 788999999999999999999999999999999999999999999999999999999988777776654
No 13
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.52 E-value=2.1e-15 Score=138.95 Aligned_cols=65 Identities=31% Similarity=0.516 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
.+|.||-|+.||..|+.+||+.|.+.+||+...|++||.++.|++.+|||||||||+|.|||.+-
T Consensus 14 krKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr~ 78 (125)
T KOG0484|consen 14 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQERA 78 (125)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999976543
No 14
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.48 E-value=1e-13 Score=145.53 Aligned_cols=67 Identities=31% Similarity=0.412 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHH
Q 002869 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (872)
Q Consensus 130 ~~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~ 196 (872)
+-+.|.|.|.++|..|..+||+.|..++|.++..+.|||.-|+|++|||||||||||+|+||..+++
T Consensus 195 KtRTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk 261 (317)
T KOG0848|consen 195 KTRTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKK 261 (317)
T ss_pred eeecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHH
Confidence 3445567788899999999999999999999999999999999999999999999999999877665
No 15
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.45 E-value=6.8e-14 Score=142.43 Aligned_cols=65 Identities=38% Similarity=0.499 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
.+..||.|+.||.+|+..||+.|++.+|.+..+|.+++..|.|++.||||||||||+|.||.|+.
T Consensus 141 hk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQea 205 (246)
T KOG0492|consen 141 HKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQEA 205 (246)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHH
Confidence 34458889999999999999999999999999999999999999999999999999999986643
No 16
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.43 E-value=7.1e-14 Score=143.86 Aligned_cols=68 Identities=29% Similarity=0.511 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHH
Q 002869 129 ADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (872)
Q Consensus 129 ~~~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~ 196 (872)
...+|.||.||+||..|+++||..|.+..|||...|++||.+|+|.+.+|||||+|||+|+|++++.+
T Consensus 32 ~~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 32 SGPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred ccchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 34567799999999999999999999999999999999999999999999999999999999887764
No 17
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.40 E-value=8.8e-14 Score=114.87 Aligned_cols=57 Identities=47% Similarity=0.737 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHH
Q 002869 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kk 191 (872)
||+|+.||.+|+..||..|+.++||+..++++||.++||++.||+.||||||.++||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 567889999999999999999999999999999999999999999999999999985
No 18
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.32 E-value=8.9e-13 Score=137.90 Aligned_cols=59 Identities=36% Similarity=0.580 Sum_probs=56.0
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
||.|+.||.+|++.|+..|++++|.++..|++||.+|+|.+.||||||||+|+|.||-.
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsT 305 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKST 305 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhcc
Confidence 56788999999999999999999999999999999999999999999999999999744
No 19
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.22 E-value=4.3e-12 Score=103.89 Aligned_cols=56 Identities=45% Similarity=0.788 Sum_probs=52.2
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHH
Q 002869 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~K 190 (872)
++.|++++++|+..||..|..++||+..++.+||.++||+..||+.||+|||.+.|
T Consensus 1 ~k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 1 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 35567799999999999999999999999999999999999999999999998864
No 20
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.22 E-value=6.5e-12 Score=125.17 Aligned_cols=65 Identities=32% Similarity=0.522 Sum_probs=59.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHHh
Q 002869 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (872)
Q Consensus 133 kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~e 197 (872)
..+++|+|.|.+|+..|++.|+.++||+...|.+|+..|+++++-||+||||||++.|++.....
T Consensus 50 ~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~ 114 (156)
T COG5576 50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKV 114 (156)
T ss_pred cCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccch
Confidence 34666778999999999999999999999999999999999999999999999999998776643
No 21
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.21 E-value=5.5e-12 Score=103.81 Aligned_cols=57 Identities=47% Similarity=0.818 Sum_probs=53.7
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHH
Q 002869 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (872)
Q Consensus 136 R~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkq 192 (872)
+++..++.+|+..||..|+.++||+..++.+||.++||+++||+.||+|||.+.|+.
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~~ 58 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcc
Confidence 456789999999999999999999999999999999999999999999999998853
No 22
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.21 E-value=1.5e-11 Score=103.79 Aligned_cols=53 Identities=15% Similarity=0.378 Sum_probs=50.6
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCC----CCHHHHHHHHHHhCCccceEEeeccchh
Q 002869 134 RKKRYHRHTPQQIQELESLFKECPH----PDEKQRLELSKRLCLETRQVKFWFQNRR 186 (872)
Q Consensus 134 kKR~RtrfT~eQl~~LE~~F~~~~y----Ps~~qReeLA~~LgLs~rQVKvWFQNRR 186 (872)
+||.|+.||++|++.||..|+.++| |+...|++||.++||++++||+||||-+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 4788999999999999999999999 9999999999999999999999999964
No 23
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.21 E-value=1.4e-11 Score=132.11 Aligned_cols=64 Identities=30% Similarity=0.500 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
-.|+||.|+.||.+|+++||..|+++.||+...|+++|...+|++.+|++||.|||+||||+++
T Consensus 109 i~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrEr 172 (351)
T KOG0486|consen 109 ISKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRER 172 (351)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhh
Confidence 3467888899999999999999999999999999999999999999999999999999997543
No 24
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.21 E-value=6.6e-12 Score=133.78 Aligned_cols=65 Identities=31% Similarity=0.373 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
...-||.|+.||.+||..||+.|-+..|-++..|.|||.+|+|.+..|||||||||.|+|||+..
T Consensus 178 ~dqmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRla 242 (408)
T KOG0844|consen 178 DDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 242 (408)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhhh
Confidence 34457889999999999999999999999999999999999999999999999999999986543
No 25
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.20 E-value=1.6e-12 Score=128.52 Aligned_cols=66 Identities=33% Similarity=0.440 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHHh
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~e 197 (872)
-+++|-|+.|+..|+..||+.|+.++|.+..+|.|||..|+|++.|||.||||||.|.||++++.+
T Consensus 98 ~~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 98 CRRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HHhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 356778999999999999999999999999999999999999999999999999999999887654
No 26
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.18 E-value=2e-11 Score=129.37 Aligned_cols=76 Identities=26% Similarity=0.406 Sum_probs=69.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHHhhhhhHHHhHHH
Q 002869 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKL 208 (872)
Q Consensus 133 kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~e~~~L~qenekL 208 (872)
..||+|+.+|..|++.|+..|+..++|-+..|++|+.+.||..|.|||||||||+|+||.++.....++.|-...+
T Consensus 166 ~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWgqyfrsm 241 (383)
T KOG4577|consen 166 SNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWGQYFRSM 241 (383)
T ss_pred ccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHHHHHHHh
Confidence 3488899999999999999999999999999999999999999999999999999999999988888887765433
No 27
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.17 E-value=6.8e-10 Score=109.49 Aligned_cols=187 Identities=19% Similarity=0.305 Sum_probs=137.4
Q ss_pred HHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHHHHhcC---hhhh
Q 002869 346 AAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD---PNRW 422 (872)
Q Consensus 346 ~Am~El~~la~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LVe~lmD---~~~W 422 (872)
+|..+++.+.+.+ .-|-...+.. +..-|.+.++.. ...+-|..+.|-.++.++.+.|+| ..+|
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~-----~v~vy~~~~~~~--------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w 67 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD-----GVKIYTKPYEDS--------GLKLLKAEGVIPASPEQVFELLMDIDLRKKW 67 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC-----cEEEEEecCCCC--------CceeEEEEEEECCCHHHHHHHHhCCchhhch
Confidence 4667888887766 6898765432 122244443222 346788899999999999999999 4455
Q ss_pred hhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEeecccccc
Q 002869 423 AEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQVLSPLVP 502 (872)
Q Consensus 423 ~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~~~SpLvp 502 (872)
-.. +.+++.++.++. ..++ +|..+..+.| ++
T Consensus 68 ~~~----~~~~~vl~~~~~--------~~~i------------------------------------~~~~~~~p~p-~~ 98 (193)
T cd00177 68 DKN----FEEFEVIEEIDE--------HTDI------------------------------------IYYKTKPPWP-VS 98 (193)
T ss_pred hhc----ceEEEEEEEeCC--------CeEE------------------------------------EEEEeeCCCc-cC
Confidence 443 344555555532 2566 7888899999 99
Q ss_pred ceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhh
Q 002869 503 VREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLI 582 (872)
Q Consensus 503 ~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~ 582 (872)
.|||.++|++.+.++|.++|+..|+|.-. .+....++|++.+++|++|+++++|.|+||++-|++..-+.. ..++
T Consensus 99 ~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~-~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP----~~~~ 173 (193)
T cd00177 99 PRDFVYLRRRRKLDDGTYVIVSKSVDHDS-HPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIP----KSLV 173 (193)
T ss_pred CccEEEEEEEEEcCCCeEEEEEeecCCCC-CCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCcc----HHHH
Confidence 99999999999999999999999998741 122235899999999999999999999999999999886543 4556
Q ss_pred ccchhHHHHHHHHHHHHH
Q 002869 583 ISGMGFGAQRWVATLQRQ 600 (872)
Q Consensus 583 ~Sg~afGA~rw~atLqR~ 600 (872)
++.+.-.+..++..++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 174 NSAAKKQLASFLKDLRKA 191 (193)
T ss_pred HhhhhhccHHHHHHHHHh
Confidence 666666667777666443
No 28
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.10 E-value=5.6e-11 Score=131.53 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
..||||||+.++......||++|.+|++|+..++.+||.+|+|+...|+|||+|||.|+||..
T Consensus 291 ~~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~ 353 (398)
T KOG3802|consen 291 QSRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRIT 353 (398)
T ss_pred cccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCC
Confidence 347888999999999999999999999999999999999999999999999999999999643
No 29
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.08 E-value=2.9e-11 Score=124.16 Aligned_cols=66 Identities=33% Similarity=0.455 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 130 ~~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
+..+||..|..|+-.|+..||+.|+..+|+-..+|.+||..+|+++.||+|||||||+||||+...
T Consensus 163 kdG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 163 LNGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred cCccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhcc
Confidence 345677778889999999999999999999999999999999999999999999999999986543
No 30
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.00 E-value=1.9e-08 Score=104.54 Aligned_cols=200 Identities=13% Similarity=0.197 Sum_probs=147.0
Q ss_pred HHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeE-EechhHHHHHhcCh---hh
Q 002869 346 AAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDP---NR 421 (872)
Q Consensus 346 ~Am~El~~la~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V-~~~~~~LVe~lmD~---~~ 421 (872)
+.+++|++++..+ .-|-...+... .+.|.+. ..+...-.-|..+.+ ...+..+.+.|+|. .+
T Consensus 10 ~~~~~~~~~~~~~-~~W~~~~~~~g---------i~iy~r~----~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~ 75 (222)
T cd08871 10 ADFEEFKKLCDST-DGWKLKYNKNN---------VKVWTKN----PENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKT 75 (222)
T ss_pred HHHHHHHHHhcCC-CCcEEEEcCCC---------eEEEEee----CCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhh
Confidence 7899999999654 47987644321 2333221 122333445666665 57888999999995 67
Q ss_pred hhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEeeccccc
Q 002869 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQVLSPLV 501 (872)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~~~SpLv 501 (872)
|-..| ..++.++-+.- ...+ +|..+..|-| |
T Consensus 76 Wd~~~----~e~~~ie~~d~--------~~~i------------------------------------~y~~~~~P~p-v 106 (222)
T cd08871 76 WDSNM----IESFDICQLNP--------NNDI------------------------------------GYYSAKCPKP-L 106 (222)
T ss_pred hhhhh----ceeEEEEEcCC--------CCEE------------------------------------EEEEeECCCC-C
Confidence 77765 34566665532 2356 7888888888 8
Q ss_pred cceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhh
Q 002869 502 PVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPL 581 (872)
Q Consensus 502 p~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl 581 (872)
..|||.++|..+..+ |.++|+..|++.-. .+....++|.....+|++|++++++.|+|||+-|++..-+ +|. -+
T Consensus 107 s~RDfV~~r~~~~~~-~~~vi~~~sv~~~~-~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP~---~l 180 (222)
T cd08871 107 KNRDFVNLRSWLEFG-GEYIIFNHSVKHKK-YPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LPK---WV 180 (222)
T ss_pred CCCeEEEEEEEEeCC-CEEEEEeccccCCC-CCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cCH---HH
Confidence 999999999988766 88899999987432 2223468999999999999999999999999999988765 443 24
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHhhhccccCC
Q 002869 582 IISGMGFGAQRWVATLQRQCECLAILMSTSVSA 614 (872)
Q Consensus 582 ~~Sg~afGA~rw~atLqR~ce~la~~~~~~v~~ 614 (872)
++..+.-.+-.++..|.++|+.....++.+-|.
T Consensus 181 vN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~~ 213 (222)
T cd08871 181 VNKATTKLAPKVMKKLHKAALKYPEWKAKNNPE 213 (222)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 666666777899999999999999988887664
No 31
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.92 E-value=9.4e-10 Score=113.43 Aligned_cols=64 Identities=27% Similarity=0.326 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
..++|+.|+.|+..|+++||+.|++.+||+...|+.||..+++++..|++||||||+||+++..
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 4566788889999999999999999999999999999999999999999999999999997664
No 32
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.90 E-value=6.2e-08 Score=99.71 Aligned_cols=195 Identities=16% Similarity=0.200 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHHHHhcC-
Q 002869 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD- 418 (872)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LVe~lmD- 418 (872)
+-.+|..|.+|++++.. .+.-|....+.. ..+.|.+. ...+..-.-|..|.+..++.++++.|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~---------~i~v~~~~----~~~~~~~~~k~~~~i~~~~~~v~~~l~d~ 68 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKTVK---------NITVSWKP----STEFTGHLYRAEGIVDALPEKVIDVIIPP 68 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEcCC---------CcEEEEec----CCCCCCEEEEEEEEEcCCHHHHHHHHHhc
Confidence 45788999999999987 447897753321 12222221 1122222358888888999999999998
Q ss_pred ----hhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeE
Q 002869 419 ----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAEL 494 (872)
Q Consensus 419 ----~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael 494 (872)
+.+|...| ..++.++-|... ..+ +|..+
T Consensus 69 ~~~~r~~Wd~~~----~~~~~le~id~~--------~~i------------------------------------~~~~~ 100 (206)
T cd08867 69 CGGLRLKWDKSL----KHYEVLEKISED--------LCV------------------------------------GRTIT 100 (206)
T ss_pred Cccccccccccc----cceEEEEEeCCC--------eEE------------------------------------EEEEc
Confidence 46787664 556666666321 233 44321
Q ss_pred ee-ccccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeecc
Q 002869 495 QV-LSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDE 571 (872)
Q Consensus 495 ~~-~SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~ 571 (872)
-- +.++|..|||..+||.++.++|.++|+-.|++.- ..+..+.++|+...++|++|++.+ ++.|+|||+-|++.--
T Consensus 101 p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp-~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG 179 (206)
T cd08867 101 PSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIP-ERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRG 179 (206)
T ss_pred cccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCC-CCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCC
Confidence 11 1357999999999999999999999999998644 223234689999999999999886 5789999999998764
Q ss_pred ccccccchhhhccchhHHHHHHHHHHHHHH
Q 002869 572 SQVHQLYKPLIISGMGFGAQRWVATLQRQC 601 (872)
Q Consensus 572 ~~v~~l~rpl~~Sg~afGA~rw~atLqR~c 601 (872)
+ +| +-++++.++=+.--|+..|++|.
T Consensus 180 ~-iP---~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 180 M-IP---QSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred C-Cc---HHHHHhhhhhhHHHHHHHHHHhc
Confidence 3 33 45577777777778899988774
No 33
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.88 E-value=6.6e-08 Score=99.64 Aligned_cols=196 Identities=15% Similarity=0.220 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHHHH-hcC
Q 002869 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVET-LMD 418 (872)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LVe~-lmD 418 (872)
...+++.|++|++.+.. ++-|-...+.. +..+.|.+.. .| ..-.-|..++|...+..+++. ++|
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~--------~~i~i~~r~~----~~-~~~~~k~~~~i~~~~~~v~~~l~~d 70 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTT--------WGDVVYSRNV----PG-VGKVFRLTGVLDCPAEFLYNELVLN 70 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecC--------CCCEEEEEEc----CC-CceEEEEEEEEcCCHHHHHHHHHcC
Confidence 67889999999999954 55897664321 0122332221 11 114578889999999998764 445
Q ss_pred ---hhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEe
Q 002869 419 ---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQ 495 (872)
Q Consensus 419 ---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~ 495 (872)
..+|-..| ..++.++.+. +...+ +|.-+.
T Consensus 71 ~~~~~~Wd~~~----~~~~~i~~~d--------~~~~i------------------------------------~y~~~~ 102 (208)
T cd08868 71 VESLPSWNPTV----LECKIIQVID--------DNTDI------------------------------------SYQVAA 102 (208)
T ss_pred ccccceecCcc----cceEEEEEec--------CCcEE------------------------------------EEEEec
Confidence 46777775 3344445443 12234 443232
Q ss_pred ec-cccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccc
Q 002869 496 VL-SPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDES 572 (872)
Q Consensus 496 ~~-SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~n--G~skVtwVeH~e~d~~ 572 (872)
-+ .++|..|||.++|+.++.+ +.++|+..|++.-. .|....++|+...++|++|+++++ +.|+|+|+-|++..-+
T Consensus 103 ~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~-~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~ 180 (208)
T cd08868 103 EAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPA-MPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW 180 (208)
T ss_pred CcCCCcccccceEEEEEEEecC-CeEEEEEEeccCCC-CCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC
Confidence 22 3589999999999998866 77999999987321 222246899999999999999987 6899999999987755
Q ss_pred cccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 002869 573 QVHQLYKPLIISGMGFGAQRWVATLQRQCECL 604 (872)
Q Consensus 573 ~v~~l~rpl~~Sg~afGA~rw~atLqR~ce~l 604 (872)
+|.- ++++.+.-+.-.++..|+++|+.|
T Consensus 181 -iP~~---lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 181 -LPQY---LVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred -Ccce---eeehhhHHHHHHHHHHHHHHHhhC
Confidence 4432 377788888889999999999753
No 34
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.70 E-value=2.8e-07 Score=95.91 Aligned_cols=172 Identities=16% Similarity=0.206 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCC-CCCCceeeeccceeEEechhHHHHHhcC
Q 002869 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLK-PNGFVTEASRETGMVIINSLALVETLMD 418 (872)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~-~~g~~~EASR~~g~V~~~~~~LVe~lmD 418 (872)
...|+++|++|++++-+ +.-.|-...++. +...+ .+ ...+.+---|..|+|..++.+|+|.+.|
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~gWk~~k~~~---------~~~v~-----~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~ 67 (204)
T cd08904 3 FKKIAQETSQEVLGYSR-DTSGWKVVKTSK---------KITVS-----WKPSRKYHGNLYRVEGIIPESPAKLIQFMYQ 67 (204)
T ss_pred HHHHHHHHHHHHHhhhh-cccCCeEEecCC---------ceEEE-----EEEcCCCCceEEEEEEEecCCHHHHHHHHhc
Confidence 35789999999999977 667897654332 11111 12 1234445678999999999999999998
Q ss_pred hhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEe-ec
Q 002869 419 PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQ-VL 497 (872)
Q Consensus 419 ~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~-~~ 497 (872)
.+...+-=+ .+.....++-|.. ...+ .|.-++ .+
T Consensus 68 ~e~r~~Wd~-~~~~~~iie~Id~--------~T~I------------------------------------~~~~~~~~~ 102 (204)
T cd08904 68 PEHRIKWDK-SLQVYKMLQRIDS--------DTFI------------------------------------CHTITQSFA 102 (204)
T ss_pred cchhhhhcc-cccceeeEEEeCC--------CcEE------------------------------------EEEeccccc
Confidence 765544333 3455566665532 2234 443333 34
Q ss_pred cccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccc
Q 002869 498 SPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDES 572 (872)
Q Consensus 498 SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~ 572 (872)
-++|-+|||..+||.++.++|.++|...|++.-. -|....++|++..|+||+|++.+++ +|+++|+-++++.-+
T Consensus 103 ~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~-~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 103 MGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQ-CPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CCcccCceEEEEEEEEEeCCCEEEEEEEecccCC-CCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 5789999999999999999999999999986432 1223469999999999999999875 899999999776643
No 35
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.64 E-value=1.5e-08 Score=113.18 Aligned_cols=64 Identities=31% Similarity=0.532 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
.++.+|.|+.|+..|++.||+.|+.++||+...|++||++.++++.+|++||+|||++++|+..
T Consensus 173 ~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 173 QRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHR 236 (354)
T ss_pred cccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhccc
Confidence 3455666889999999999999999999999999999999999999999999999999997653
No 36
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.51 E-value=4.2e-06 Score=86.98 Aligned_cols=193 Identities=13% Similarity=0.209 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHHHHhcCh
Q 002869 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (872)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LVe~lmD~ 419 (872)
..+++++|+++++.+-+ ++.-|-...+.. +.+.|.+... .+..-.-|.-|+|..++.+|++.|+|.
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~~W~~~~~~~---------~i~v~~~~~~----~~~~~~~k~e~~i~~s~~~~~~~l~d~ 68 (208)
T cd08903 3 YAELAESVADKMLLYRR-DESGWKTCRRTN---------EVAVSWRPSA----EFAGNLYKGEGIVYATLEQVWDCLKPA 68 (208)
T ss_pred HHHHHHHHHHHHHhhhc-cccCCEEEEcCC---------CEEEEeeecC----CCCCcEEEEEEEecCCHHHHHHHHHhc
Confidence 36789999999999975 677897654331 2333322110 111112678889999999999999965
Q ss_pred -----hhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeE
Q 002869 420 -----NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAEL 494 (872)
Q Consensus 420 -----~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael 494 (872)
.+|-..| ..++-++-|.. ...+ .|.
T Consensus 69 ~~~~r~~W~~~~----~~~~vle~id~--------~~~i------------------------------------~~~-- 98 (208)
T cd08903 69 AGGLRVKWDQNV----KDFEVVEAISD--------DVSV------------------------------------CRT-- 98 (208)
T ss_pred cchhhhhhhhcc----ccEEEEEEecC--------CEEE------------------------------------EEE--
Confidence 5898886 33455555531 1222 222
Q ss_pred eeccc---cccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeee
Q 002869 495 QVLSP---LVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEY 569 (872)
Q Consensus 495 ~~~Sp---Lvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~n--G~skVtwVeH~e~ 569 (872)
..+.| +|..|||..+|+.++.++|.++|.-.|...-. -|..+.++|+++.|+|++|...++ +.|+|+|+-|++.
T Consensus 99 ~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~-~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dp 177 (208)
T cd08903 99 VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPL-CPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDL 177 (208)
T ss_pred ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEecc
Confidence 44555 69999999999999999999887776765421 122246899999999999999964 5899999988876
Q ss_pred ccccccccchhhhccchhHHHHHHHHHHHHHH
Q 002869 570 DESQVHQLYKPLIISGMGFGAQRWVATLQRQC 601 (872)
Q Consensus 570 d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~c 601 (872)
-- .+| +.++++.++=...-.+..|+++.
T Consensus 178 kG-~iP---~~lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 178 SG-YLP---QTVVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred CC-CcC---HHHHHHHhhHHHHHHHHHHHHHH
Confidence 42 354 34565544444445566665554
No 37
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.44 E-value=1.4e-07 Score=100.87 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
..|||+|+.+...+.+.||.+|..++.|+.+....+|++|.|....|+|||+|.|.|.||.+
T Consensus 307 ~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 307 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred cccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhh
Confidence 45678889999999999999999999999999999999999999999999999999998743
No 38
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.42 E-value=8.6e-06 Score=85.07 Aligned_cols=129 Identities=17% Similarity=0.239 Sum_probs=95.8
Q ss_pred CCceeeeccceeEEechhHHH-HHhcChhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHH
Q 002869 393 GFVTEASRETGMVIINSLALV-ETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLL 471 (872)
Q Consensus 393 g~~~EASR~~g~V~~~~~~LV-e~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~ 471 (872)
+...-+-|....|.-.+..++ .+|.++..|-..| ..+++++-|. +...+
T Consensus 48 ~~~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~----~~~~~ie~ld--------~~tdi------------------ 97 (205)
T cd08909 48 GNPLRLWKVSVEVEAPPSVVLNRVLRERHLWDEDF----LQWKVVETLD--------KQTEV------------------ 97 (205)
T ss_pred CCceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhc----ceeEEEEEeC--------CCcEE------------------
Confidence 333456676666666666664 4677888898887 4466666553 22344
Q ss_pred HHHHHHHHhhhhcccccceeeeEeeccccccceeeEEEeeecee-cCceEEEEEEecCCccCCCCCCCccceeecCCcce
Q 002869 472 IILVYKKIKIKLFFSFLEMHAELQVLSPLVPVREVNFLRFCKQH-AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCV 550 (872)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~M~ael~~~SpLvp~Re~~flRyckq~-~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGcl 550 (872)
.|--+.-+-|+ |.|||..+|+-++. ++|.++|+..|++.....+ ..++|+..+=+|++
T Consensus 98 ------------------~~y~~~~~~P~-~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~VRa~~~~~gyl 156 (205)
T cd08909 98 ------------------YQYVLNCMAPH-PSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGVRAVVLDSQYL 156 (205)
T ss_pred ------------------EEEEeecCCCC-CCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcEEEEEEcCcEE
Confidence 44445556675 99999999997654 6999999999999765432 25899999999999
Q ss_pred EeecCCCccEEEEEEeeeeccc
Q 002869 551 VQDMPNGYSKVTWVEHAEYDES 572 (872)
Q Consensus 551 Iq~~~nG~skVtwVeH~e~d~~ 572 (872)
|+++++|.|+||++-|++..-+
T Consensus 157 I~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 157 IEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred EEECCCCCEEEEEEEEecCCCC
Confidence 9999999999999999986543
No 39
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.37 E-value=8.6e-06 Score=83.93 Aligned_cols=167 Identities=13% Similarity=0.245 Sum_probs=117.9
Q ss_pred HHHHHHHHHhhcCCCCceeeccCC-CcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHHHHhcCh-hhh
Q 002869 345 LAAMDELVKMAQTDEPLWIRSFEG-SGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP-NRW 422 (872)
Q Consensus 345 ~~Am~El~~la~~~eplWi~~~~~-~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LVe~lmD~-~~W 422 (872)
+.+.++|++-+...+.-|.-..+. + .+| |.|.. +.++...+=|..+.|...+.++++.|+|. .+|
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~~g-i~I-----~~k~~-------~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~W 70 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSSDH-VEL-----AFKKV-------DDGHPLRLWRASTEVEAPPEEVLQRILRERHLW 70 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecCCc-EEE-----EEEeC-------CCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhcc
Confidence 467889999999889999865332 2 121 22221 23445567788888888899998877664 457
Q ss_pred hhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEeecccccc
Q 002869 423 AEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQVLSPLVP 502 (872)
Q Consensus 423 ~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~~~SpLvp 502 (872)
-..| ..++.++-++. ...+ .|..+..|-| ++
T Consensus 71 d~~~----~~~~vie~id~--------~~~i------------------------------------~y~~~~~p~p-v~ 101 (197)
T cd08869 71 DDDL----LQWKVVETLDE--------DTEV------------------------------------YQYVTNSMAP-HP 101 (197)
T ss_pred chhh----heEEEEEEecC--------CcEE------------------------------------EEEEeeCCCC-CC
Confidence 6665 44555555532 1235 6666677777 59
Q ss_pred ceeeEEEeeece-ecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccc
Q 002869 503 VREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQ 576 (872)
Q Consensus 503 ~Re~~flRyckq-~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~ 576 (872)
.|||..+|+++. .++|..+|.=.|++....-+ +.++|++.+++|++|++..+|.|+|||+-|++.-- .+|.
T Consensus 102 ~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p--~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G-~iP~ 173 (197)
T cd08869 102 TRDYVVLRTWRTDLPKGACVLVETSVEHTEPVP--LGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRG-RSPE 173 (197)
T ss_pred CceEEEEEEEEecCCCCcEEEEEECCcCCCCCC--CCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCC-CCCc
Confidence 999999998775 67889999999986321111 15899999999999999999999999999998643 3443
No 40
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.28 E-value=8.2e-06 Score=97.18 Aligned_cols=129 Identities=18% Similarity=0.306 Sum_probs=101.6
Q ss_pred eeeccceeEEechhHHHHHhcChh----hhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHH
Q 002869 397 EASRETGMVIINSLALVETLMDPN----RWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLI 472 (872)
Q Consensus 397 EASR~~g~V~~~~~~LVe~lmD~~----~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~ 472 (872)
-+=|+.|+|-..+.+|.|.+|+.+ +|-..| ..++-++-| +|...+
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~----~~~~vIE~I--------D~htdI------------------- 275 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSF----QYGSLVEEV--------DGHTAI------------------- 275 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcc----cceEEEEEe--------cCCeEE-------------------
Confidence 577889999999999999999777 666665 556766666 445556
Q ss_pred HHHHHHHhhhhcccccceeeeEe--eccccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcce
Q 002869 473 ILVYKKIKIKLFFSFLEMHAELQ--VLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCV 550 (872)
Q Consensus 473 ~~~~~~~~~~~~~~~~~M~ael~--~~SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGcl 550 (872)
+|.-++ .+...+-+|||+++||-+..+||+++|+=+|+..-.- |..+.|+|.+..|.||+
T Consensus 276 -----------------~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~c-PP~kG~VRg~~~pGGwi 337 (719)
T PLN00188 276 -----------------LYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENC-GPQPGFVRAHLESGGFN 337 (719)
T ss_pred -----------------EEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCC-CCCCCeEEEEEeCCEEE
Confidence 554443 3445677799999999999999999999999875322 22246999999999999
Q ss_pred EeecC--C--CccEEEEEEeeeeccccc
Q 002869 551 VQDMP--N--GYSKVTWVEHAEYDESQV 574 (872)
Q Consensus 551 Iq~~~--n--G~skVtwVeH~e~d~~~v 574 (872)
|.+++ + -.|.|+|+-|++..-|..
T Consensus 338 IsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 338 ISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred EEECCCCCCCCceEEEEEEEEccCcccc
Confidence 99964 3 379999999999988874
No 41
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.27 E-value=1.4e-05 Score=83.11 Aligned_cols=193 Identities=13% Similarity=0.214 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceeecc--CCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHHHHh
Q 002869 339 MFLELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (872)
Q Consensus 339 ~~~~lA~~Am~El~~la~~~eplWi~~~--~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LVe~l 416 (872)
-...++.+|++|++++.+ ++.-|-... +.| ..| |.+.++.. | -+-|..++|..++.+|++.|
T Consensus 5 ~y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g-i~v-----~s~~~~~~------~---k~~k~e~~i~~~~~~l~~~l 68 (209)
T cd08905 5 SYIKQGEEALQKSLSILQ-DQEGWKTEIVAENG-DKV-----LSKVVPDI------G---KVFRLEVVVDQPLDNLYSEL 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhc-cccCCEEEEecCCC-CEE-----EEEEcCCC------C---cEEEEEEEecCCHHHHHHHH
Confidence 357889999999999986 667897652 223 111 22333222 1 45566778999999999555
Q ss_pred c-Ch---hhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceee
Q 002869 417 M-DP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHA 492 (872)
Q Consensus 417 m-D~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~a 492 (872)
. |. .+|...+ ..++.++.++. .+ .+ +|.
T Consensus 69 ~~d~e~~~~W~~~~----~~~~vl~~id~-------~~-~i------------------------------------~y~ 100 (209)
T cd08905 69 VDRMEQMGEWNPNV----KEVKILQRIGK-------DT-LI------------------------------------THE 100 (209)
T ss_pred Hhchhhhceecccc----hHHHHHhhcCC-------Cc-eE------------------------------------EEE
Confidence 5 43 5676664 22233333321 11 23 553
Q ss_pred eEeeccc--cccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeee
Q 002869 493 ELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAE 568 (872)
Q Consensus 493 el~~~Sp--Lvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~n--G~skVtwVeH~e 568 (872)
..++.| +|..|||..+|+.++.+++. +++..|.+.-. -|....++|.+..+.|++|+++++ |.++|+|+-|++
T Consensus 101 -~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~~~~~-~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~D 177 (209)
T cd08905 101 -VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMATHFGL-MPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSID 177 (209)
T ss_pred -EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEeecCCC-CCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeec
Confidence 556766 79999999999999886654 45566654321 122246899999999999999988 999999999998
Q ss_pred eccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 002869 569 YDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 602 (872)
Q Consensus 569 ~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce 602 (872)
..-+ +|. .|++..++=..-.++..|+++.+
T Consensus 178 pkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 178 LKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred CCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 7655 443 45766666667788888887765
No 42
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.15 E-value=1.2e-06 Score=93.48 Aligned_cols=50 Identities=26% Similarity=0.469 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHH
Q 002869 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (872)
Q Consensus 141 fT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~K 190 (872)
|...-...|..+|..++||+..++.+||+.+||+..||-.||+|||.|+|
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDR 232 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDR 232 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhh
Confidence 56667789999999999999999999999999999999999999999998
No 43
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.15 E-value=6.4e-05 Score=78.47 Aligned_cols=196 Identities=10% Similarity=0.167 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceeec-cC-CCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHH-HH
Q 002869 339 MFLELALAAMDELVKMAQTDEPLWIRS-FE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ET 415 (872)
Q Consensus 339 ~~~~lA~~Am~El~~la~~~eplWi~~-~~-~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LV-e~ 415 (872)
-....+.+||+++.++... +.-|.-. .+ .| .+.|.+........| |.-+.|...+..|. +.
T Consensus 5 ~~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g----------i~V~s~~~~~~~~~f-----k~~~~v~~~~~~l~~~l 68 (209)
T cd08906 5 EYVRQGKEALAVVEQILAQ-EENWKFEKNNDNG----------DTVYTLEVPFHGKTF-----ILKAFMQCPAELVYQEV 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC----------CEEEEeccCCCCcEE-----EEEEEEcCCHHHHHHHH
Confidence 4677899999999999765 4579853 22 33 123322211111233 55667777888885 68
Q ss_pred hcChhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEe
Q 002869 416 LMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQ 495 (872)
Q Consensus 416 lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~ 495 (872)
|.|.+...+=.+.+ ..++.++-+.. .--+ .| +.-
T Consensus 69 l~D~~~~~~W~~~~-~~~~vi~~~~~--------~~~i------------------------------------~Y-~v~ 102 (209)
T cd08906 69 ILQPEKMVLWNKTV-SACQVLQRVDD--------NTLV------------------------------------SY-DVA 102 (209)
T ss_pred HhChhhccccCccc-hhhhheeeccC--------CcEE------------------------------------EE-EEc
Confidence 88876555444333 22344333321 1123 45 555
Q ss_pred eccc--cccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeec--CCCccEEEEEEeeeecc
Q 002869 496 VLSP--LVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKVTWVEHAEYDE 571 (872)
Q Consensus 496 ~~Sp--Lvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~--~nG~skVtwVeH~e~d~ 571 (872)
.|.+ .|..|||-.+|+.++.+++ ++++..|++.-. -|..+.++|.+..++|++|++. .+|.|+|||+-|++.--
T Consensus 103 ~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~-~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G 180 (209)
T cd08906 103 AGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSH-KPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKG 180 (209)
T ss_pred cccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCC
Confidence 5554 6899999999999998888 577778876431 1222468999999999999985 57799999999998765
Q ss_pred ccccccchhhhccchhHHHHHHHHHHHHHHH
Q 002869 572 SQVHQLYKPLIISGMGFGAQRWVATLQRQCE 602 (872)
Q Consensus 572 ~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce 602 (872)
+ +| +.|++..++=..-..+..|.++.+
T Consensus 181 ~-lP---~~lvN~~~~~~~~~~~~~LR~~~~ 207 (209)
T cd08906 181 R-LP---RYLIHQSLAATMFEFASHLRQRIR 207 (209)
T ss_pred C-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 33 245666655555556666655543
No 44
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.08 E-value=7e-05 Score=78.00 Aligned_cols=191 Identities=15% Similarity=0.181 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCC-CCCceeeeccceeEEechhHHHHHhcC
Q 002869 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKP-NGFVTEASRETGMVIINSLALVETLMD 418 (872)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~-~g~~~EASR~~g~V~~~~~~LVe~lmD 418 (872)
...+|.++-+++++--+.++-.|-.-.+.+. -.+..++ .-|.+---|.-|+|--.+..|++.+-+
T Consensus 3 ~~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~~--------------~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~ 68 (202)
T cd08902 3 IASKTTKLQNTLIQYHSILEEEWRVAKKSKD--------------VTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRP 68 (202)
T ss_pred HHHHHHHHHHHHHHhccccccCcEEEEeCCC--------------EEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhc
Confidence 3567888888899987779999976533221 1122232 245555667778888899999999999
Q ss_pred ---hhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccce-eeeE
Q 002869 419 ---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEM-HAEL 494 (872)
Q Consensus 419 ---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M-~ael 494 (872)
+.+|-+.+ ..++.++-|..+ + .+ + |.=.
T Consensus 69 ~~~r~~Wd~~v----~~~~Iie~Id~d-------t-~I------------------------------------~~yvt~ 100 (202)
T cd08902 69 GPYRLDWDSLM----TSMDIIEEFEEN-------C-CV------------------------------------MRYTTA 100 (202)
T ss_pred ccchhcccchh----hheeHhhhhcCC-------c-EE------------------------------------EEEEcc
Confidence 55998774 445555545422 2 22 2 3444
Q ss_pred eeccccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccc
Q 002869 495 QVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDES 572 (872)
Q Consensus 495 ~~~SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~ 572 (872)
-.+-++|-+|||.-+||+++.++|. ..|=||++.-... +.++|.+..|.||++++.+|| .|+.||+-++++.-+
T Consensus 101 ~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~p---pg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~ 176 (202)
T cd08902 101 GQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEAR---PNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM 176 (202)
T ss_pred cCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCC---CCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC
Confidence 5666799999999999999999998 7778887754322 269999999999999999998 677889999776644
Q ss_pred cccccchhhhccchhHHHHHHHHHHHHH
Q 002869 573 QVHQLYKPLIISGMGFGAQRWVATLQRQ 600 (872)
Q Consensus 573 ~v~~l~rpl~~Sg~afGA~rw~atLqR~ 600 (872)
|=+-++++.++=..=-....|+++
T Consensus 177 ----LPqsiIdq~~~~~~~~F~~~Lrk~ 200 (202)
T cd08902 177 ----LPQSAVDTAMASTLVNFYSDLKKA 200 (202)
T ss_pred ----ccHHHHHHHhhHHHHHHHHHHHHh
Confidence 334456555554433444455443
No 45
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.98 E-value=0.00013 Score=75.95 Aligned_cols=183 Identities=15% Similarity=0.230 Sum_probs=123.6
Q ss_pred HHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEE-echhHHHHHhcChh---hhhhhcc
Q 002869 352 VKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPN---RWAEMFP 427 (872)
Q Consensus 352 ~~la~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~-~~~~~LVe~lmD~~---~W~~~Fp 427 (872)
+..-+.+.+-|-...+... .+.|.+.. .|...-.=|..+.+. +.+..|.+.|+|.+ +|-..+
T Consensus 17 ~~~~~~~~~~W~l~~~~~~---------i~Vy~r~~----~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~- 82 (207)
T cd08910 17 LQQPALDGAAWELLVESSG---------ISIYRLLD----EQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYV- 82 (207)
T ss_pred hcCCCCCCCCeEEEEecCC---------eEEEEecc----CCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHH-
Confidence 3444556678987654321 22332221 122223677778887 78999999999965 566653
Q ss_pred cccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEeeccccccceeeE
Q 002869 428 CMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQVLSPLVPVREVN 507 (872)
Q Consensus 428 ~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~~~SpLvp~Re~~ 507 (872)
+. .++.++. + -.+ +|-.+..|-| |..||+.
T Consensus 83 --~~---~~~~~~~-------~-~~i------------------------------------~y~~~k~PwP-vs~RD~V 112 (207)
T cd08910 83 --KE---LYEKECD-------G-ETV------------------------------------IYWEVKYPFP-LSNRDYV 112 (207)
T ss_pred --Hh---heeecCC-------C-CEE------------------------------------EEEEEEcCCC-CCCceEE
Confidence 21 1232221 1 245 7888889999 9999999
Q ss_pred EEeeec-eecCc--eEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhcc
Q 002869 508 FLRFCK-QHAEG--VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIIS 584 (872)
Q Consensus 508 flRyck-q~~~g--~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~S 584 (872)
++|-.. +..+| .|+|+..|.+.- .-|....++|....-+|.+|++..++.|+|+++-|.+--- .+|. -+++.
T Consensus 113 ~~r~~~~~~~~~~~~~iv~~~s~~~p-~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG-~IP~---wlvN~ 187 (207)
T cd08910 113 YIRQRRDLDVEGRKIWVILARSTSLP-QLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGG-MIPS---WLINW 187 (207)
T ss_pred EEEEeccccCCCCeEEEEEecCCCCC-CCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCC-cchH---HHHHH
Confidence 996444 33344 689888887632 1222346899999999999999988899999999987522 3443 25777
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 002869 585 GMGFGAQRWVATLQRQCEC 603 (872)
Q Consensus 585 g~afGA~rw~atLqR~ce~ 603 (872)
....+.-.|+..|+..|.+
T Consensus 188 ~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 188 AAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred HHHHhhHHHHHHHHHHHhc
Confidence 7888899999999888863
No 46
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.79 E-value=0.00058 Score=71.00 Aligned_cols=200 Identities=15% Similarity=0.074 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHHHHhcCh
Q 002869 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (872)
Q Consensus 340 ~~~lA~~Am~El~~la~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LVe~lmD~ 419 (872)
+++=+...|+|+.+..+. +.-|....+.. +.++|.+.. ++-..-+-|.-|++..+...+.++|.|.
T Consensus 3 ~~~~~~~~~~~~~~~l~~-~~~W~~~~~~~---------~i~v~~r~~----~~~~~~~~k~e~~i~~~~~~~~~vl~d~ 68 (215)
T cd08877 3 KIRQEATIMQENLKDLDE-SDGWTLQKESE---------GIRVYYKFE----PDGSLLSLRMEGEIDGPLFNLLALLNEV 68 (215)
T ss_pred hHHHHHHHHHHHHhcccC-CCCcEEeccCC---------CeEEEEEeC----CCCCEEEEEEEEEecCChhHeEEEEehh
Confidence 355566889999998876 55798765432 233332211 1222467788889999999999999999
Q ss_pred hhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEeeccc
Q 002869 420 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQVLSP 499 (872)
Q Consensus 420 ~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~~~Sp 499 (872)
+...+-+|.. ..++.++.++-. -++ .|-.+-+|-|
T Consensus 69 ~~~~~W~p~~-~~~~~l~~~~~~--------~~v------------------------------------~y~~~~~PwP 103 (215)
T cd08877 69 ELYKTWVPFC-IRSKKVKQLGRA--------DKV------------------------------------CYLRVDLPWP 103 (215)
T ss_pred hhHhhhcccc-eeeEEEeecCCc--------eEE------------------------------------EEEEEeCceE
Confidence 8777777763 344555544321 244 5556666777
Q ss_pred cccceeeEEE-eeecee-cCceEEEEEEecCCccC--------CCCCC-CccceeecCCcceEeecCCCccEEEEEEeee
Q 002869 500 LVPVREVNFL-RFCKQH-AEGVWAVVDVSIDTIRE--------TSGAP-AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAE 568 (872)
Q Consensus 500 Lvp~Re~~fl-Ryckq~-~~g~w~VvDvS~d~~~~--------~~~~~-~~~~~~r~PSGclIq~~~nG~skVtwVeH~e 568 (872)
+..||+.+. +.+.++ ++|..+|+=.|++.-.+ -|..+ .++|.+...+|.+|+++++|.++|+++-|++
T Consensus 104 -v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~D 182 (215)
T cd08877 104 -LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVD 182 (215)
T ss_pred -ecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcC
Confidence 888999975 556777 89999999999985432 12233 6899999999999999999999999999966
Q ss_pred eccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 002869 569 YDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 602 (872)
Q Consensus 569 ~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce 602 (872)
-.-+-||.= |++...--.+...+..|++.|+
T Consensus 183 P~g~~IP~~---liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 183 PKMSLVPKS---LLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred CCcccCCHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 332226653 3444444446667777777765
No 47
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=97.68 E-value=0.00064 Score=71.19 Aligned_cols=162 Identities=19% Similarity=0.239 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhhcCCCCceeeccC-CCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHHHHh-cChhh
Q 002869 344 ALAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL-MDPNR 421 (872)
Q Consensus 344 A~~Am~El~~la~~~eplWi~~~~-~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LVe~l-mD~~~ 421 (872)
-+..+++|++.|..--=-|+.-.. .+ -|+- |. .+..|-..-.-|....+.-.+.+++..| -|+.+
T Consensus 11 ~~~~~~~l~~e~~~k~k~w~~~~~~~~-~el~----~~--------k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~ 77 (204)
T cd08908 11 LQDCVDGLFKEVKEKFKGWVSYSTSEQ-AELS----YK--------KVSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHL 77 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCc-EEEE----Ee--------ccCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHH
Confidence 346677777777644445554211 11 1110 11 1233444455666667777777887544 45677
Q ss_pred hhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEeeccccc
Q 002869 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQVLSPLV 501 (872)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~~~SpLv 501 (872)
|-..+ ..++.++-++... .+ .|-.+..|-| +
T Consensus 78 Wd~~~----~e~~vIe~ld~~~--------~I------------------------------------~Yy~~~~PwP-~ 108 (204)
T cd08908 78 WDVDL----LDSKVIEILDSQT--------EI------------------------------------YQYVQNSMAP-H 108 (204)
T ss_pred HHHHh----hheEeeEecCCCc--------eE------------------------------------EEEEccCCCC-C
Confidence 88886 4456666665221 34 5666678888 7
Q ss_pred cceeeEEEeeec-eecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeec
Q 002869 502 PVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYD 570 (872)
Q Consensus 502 p~Re~~flRyck-q~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d 570 (872)
|.|||.++|-.+ +.++|..+|+-.|++.-. .| ..++|.+.+-+|++|+++.+|.|+||.+-|++--
T Consensus 109 ~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~-~P--~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPg 175 (204)
T cd08908 109 PARDYVVLRTWRTNLPKGACALLATSVDHDR-AP--VAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLR 175 (204)
T ss_pred CCcEEEEEEEEEEeCCCCeEEEEEeecCccc-CC--cCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCC
Confidence 999999997765 478999999999988542 12 2368999999999999999999999999999753
No 48
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.67 E-value=0.00098 Score=67.50 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=103.9
Q ss_pred eeccceeEEechhHHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHH
Q 002869 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYK 477 (872)
Q Consensus 398 ASR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~ 477 (872)
.-|.+++|-.++.++.++++|.+.|.+-=|.+ ...+||.... ++ -.+
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~----~~~~vie~~~----~~-~~i------------------------ 88 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTESYPQWMPNC----KESRVLKRTD----DN-ERS------------------------ 88 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhc----ceEEEeecCC----CC-cEE------------------------
Confidence 45888889999999999999998887665543 4455555332 11 133
Q ss_pred HHhhhhcccccceeeeEeeccccccceeeEEEeeecee-cCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCC
Q 002869 478 KIKIKLFFSFLEMHAELQVLSPLVPVREVNFLRFCKQH-AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPN 556 (872)
Q Consensus 478 ~~~~~~~~~~~~M~ael~~~SpLvp~Re~~flRyckq~-~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~n 556 (872)
+|..+..+-| |..|||.+.|..... .+|..+|.=.|.+.. .+....++|.+.+.+|+.|++.++
T Consensus 89 ------------~~~~~~~p~p-vs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~--~P~~~~~vR~~~~~~~~~i~~~~~ 153 (195)
T cd08876 89 ------------VYTVIDLPWP-VKDRDMVLRSTTEQDADDGSVTITLEAAPEA--LPEQKGYVRIKTVEGQWTFTPLGN 153 (195)
T ss_pred ------------EEEEEecccc-cCCceEEEEEEEEEcCCCCEEEEEeecCCcc--CCCCCCeEEceeceeeEEEEECCC
Confidence 4444555544 788999987654333 367776666666542 122235889999999999999999
Q ss_pred CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 002869 557 GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 601 (872)
Q Consensus 557 G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~c 601 (872)
|.|+|+++-|++..-+...-+.+.+. .=+..++++.|.++|
T Consensus 154 ~~t~vt~~~~~dp~g~iP~~lv~~~~----~~~~~~~l~~l~~~~ 194 (195)
T cd08876 154 GKTRVTYQAYADPGGSIPGWLANAFA----KDAPYNTLENLRKQL 194 (195)
T ss_pred CeEEEEEEEEeCCCCCCCHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 99999999999886543334444443 335667888887665
No 49
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.66 E-value=2.5e-05 Score=83.05 Aligned_cols=60 Identities=27% Similarity=0.496 Sum_probs=53.9
Q ss_pred CCCCCCCCHHHHHHHHHhhh---cCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 135 KKRYHRHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F~---~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
+|+|+.|+..-.+.|..+|. .+|||+...+++||++++++..||-.||.|+|-+.||...
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~~ 251 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNMG 251 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhhh
Confidence 55666899999999999995 5889999999999999999999999999999999997543
No 50
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.47 E-value=0.0012 Score=69.15 Aligned_cols=131 Identities=17% Similarity=0.205 Sum_probs=88.9
Q ss_pred CCCCCceeeeccceeEEechhHHHHHhcChh---hhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhh
Q 002869 390 KPNGFVTEASRETGMVIINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLI 466 (872)
Q Consensus 390 ~~~g~~~EASR~~g~V~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~ 466 (872)
...+|.. -+.|...+.+|++.|.|.. +|-.++ .+.+||..-. ....+
T Consensus 43 ~~~~~~g-----e~~v~as~~~v~~ll~D~~~r~~Wd~~~-------~~~~vl~~~~-----~d~~i------------- 92 (205)
T cd08874 43 TYHGFLG-----AGVIKAPLATVWKAVKDPRTRFLYDTMI-------KTARIHKTFT-----EDICL------------- 92 (205)
T ss_pred CcceEEE-----EEEEcCCHHHHHHHHhCcchhhhhHHhh-------hheeeeeecC-----CCeEE-------------
Confidence 3456664 3477889999999998875 566665 6666665332 22244
Q ss_pred hHHHHHHHHHHHHhhhhcccccceeeeEeecccc-ccceeeEEEeeeceecCceEEEEEEecCC-ccCCCCCCCccceee
Q 002869 467 NYFLLIILVYKKIKIKLFFSFLEMHAELQVLSPL-VPVREVNFLRFCKQHAEGVWAVVDVSIDT-IRETSGAPAFVNCRR 544 (872)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~M~ael~~~SpL-vp~Re~~flRyckq~~~g~w~VvDvS~d~-~~~~~~~~~~~~~~r 544 (872)
.|.....|-|+ ++.|||..+|-....+++.. |.=.|++. ..+.. ...++|.+.
T Consensus 93 -----------------------~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~v-i~~~SV~~~~~P~~-~~~~VR~~~ 147 (205)
T cd08874 93 -----------------------VYLVHETPLCLLKQPRDFCCLQVEAKEGELSV-VACQSVYDKSMPEP-GRSLVRGEI 147 (205)
T ss_pred -----------------------EEEEecCCCCCCCCCCeEEEEEEEEECCCcEE-EEEEecccccCCCC-CCCeEEeee
Confidence 45444444444 39999999995555555544 66677665 22211 115899999
Q ss_pred cCCcceEeec---CCCccEEEEEEeeeecccccc
Q 002869 545 LPSGCVVQDM---PNGYSKVTWVEHAEYDESQVH 575 (872)
Q Consensus 545 ~PSGclIq~~---~nG~skVtwVeH~e~d~~~v~ 575 (872)
+++|++|+++ ++|.|+||.+-|+|---..+|
T Consensus 148 ~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 148 LPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred EeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 9999999999 999999999999987533344
No 51
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.46 E-value=0.0001 Score=76.29 Aligned_cols=64 Identities=30% Similarity=0.610 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
..+.++.|+.++..|+..++..|...++|+...+++|+..++++++.+++||||+|++.|+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 150 NKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred ccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 4566778889999999999999999999999999999999999999999999999999997654
No 52
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.44 E-value=0.0009 Score=70.04 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeE-EechhHHHHHhcChhhh
Q 002869 344 ALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDPNRW 422 (872)
Q Consensus 344 A~~Am~El~~la~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V-~~~~~~LVe~lmD~~~W 422 (872)
-+..+++|++-+....=-|+...+....||. .|. .+.|...--=|.+.-| ...+.-|-++|.|+..|
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~~~vev~-----~kk-------~~d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~W 78 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGPDNTELA-----CKK-------VGDGHPLRLWKVSTEVEAPPSVVLQRVLRERHLW 78 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCCCCcEEE-----EEe-------CCCCCceEEEEEEEEecCCCHHHHHHHhhchhhh
Confidence 4577888999988777789874332102221 111 0111111111222222 23445567999999999
Q ss_pred hhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEeecccccc
Q 002869 423 AEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQVLSPLVP 502 (872)
Q Consensus 423 ~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~~~SpLvp 502 (872)
-+.+ -+.++++.|.-.. .+ -|=-+.- .+.+|
T Consensus 79 D~~m----~e~~~Ie~Ld~n~--------dI------------------------------------~yY~~~~-~~p~p 109 (205)
T cd08907 79 DEDL----LHSQVIEALENNT--------EV------------------------------------YHYVTDS-MAPHP 109 (205)
T ss_pred hHHH----HhhhhheeecCCC--------EE------------------------------------EEEEecC-CCCCC
Confidence 9886 5678888775221 22 1111112 25689
Q ss_pred ceeeEEEeeec-eecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccc
Q 002869 503 VREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES 572 (872)
Q Consensus 503 ~Re~~flRyck-q~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~ 572 (872)
.|||.+||.-+ .+..|.-+|+.+|++....-+ .. -+|+--+=|||||++++.|.|+||-+-|++..-+
T Consensus 110 ~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp-~~-gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~ 178 (205)
T cd08907 110 RRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQL-EA-GVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGR 178 (205)
T ss_pred CceEEEEEEEccCCCCCCEEEEEecccCCcCCC-CC-CeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCC
Confidence 99999999864 467788999999998654333 22 3999999999999999999999999999987544
No 53
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.43 E-value=7.5e-05 Score=86.45 Aligned_cols=61 Identities=28% Similarity=0.307 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHH
Q 002869 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (872)
Q Consensus 130 ~~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~K 190 (872)
+..+.||.|.+||..|.+.|..+|++++||+.+..+.|+.+|+|...-|..||-|-|.|.+
T Consensus 416 ~~~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 416 KMLQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRSL 476 (558)
T ss_pred ccccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhcc
Confidence 3455688899999999999999999999999999999999999999999999999888753
No 54
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.40 E-value=2.9e-05 Score=61.31 Aligned_cols=34 Identities=32% Similarity=0.630 Sum_probs=28.9
Q ss_pred cCCCCCHHHHHHHHHHhCCccceEEeeccchhhH
Q 002869 155 ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (872)
Q Consensus 155 ~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK 188 (872)
.+|||+..++++||++.||+.+||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4799999999999999999999999999999864
No 55
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.36 E-value=0.0059 Score=63.46 Aligned_cols=152 Identities=13% Similarity=0.107 Sum_probs=115.1
Q ss_pred eeeccceeE-EechhHHHHHhcChh---hhhhhcccccccceEeEEeeCCCCCCCC-CcEEEeeeecchhhhhhhhHHHH
Q 002869 397 EASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRN-GALQLVEFYNSIINEHLINYFLL 471 (872)
Q Consensus 397 EASR~~g~V-~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~-Galql~~~~~~~~~~~~~~~~~~ 471 (872)
-.=|..+++ .+.+..|.+.|+|.+ +|-..| ...++|.... + | ..+
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~-------~~~~~le~~~----~~~-~~i------------------ 99 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETV-------IEHETLEEDE----KSG-TEI------------------ 99 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhe-------eeEEEEEecC----CCC-cEE------------------
Confidence 456777777 569999999999964 566664 3344443211 1 2 356
Q ss_pred HHHHHHHHhhhhcccccceeeeEeeccccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceE
Q 002869 472 IILVYKKIKIKLFFSFLEMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVV 551 (872)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~M~ael~~~SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclI 551 (872)
+|-.+..|-|+ -.||+.+.|-..+..+|..+|+=.|++.-. .+.. .++|.+..=||++|
T Consensus 100 ------------------~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~-~P~~-~~vRv~~~~~~~~i 158 (209)
T cd08870 100 ------------------VRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPYPS-VPRS-GRKRVDDYESSLVI 158 (209)
T ss_pred ------------------EEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcCCC-CCCC-CcEEEEEEEeEEEE
Confidence 88999999988 889999998777777899988888877521 1212 48999999999999
Q ss_pred eec--CCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 002869 552 QDM--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 603 (872)
Q Consensus 552 q~~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce~ 603 (872)
++. .+|.++|+++-|.+-. -.+|. -|++.....|+-.|+..|.+.|..
T Consensus 159 ~p~~~~~~~t~~~~~~~~dp~-G~IP~---wlvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 159 RAVKGDGQGSACEVTYFHNPD-GGIPR---ELAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred EEecCCCCceEEEEEEEECCC-CCCCH---HHHHHHHHhhhHHHHHHHHHHHhc
Confidence 999 7899999999998632 23554 468888999999999999998853
No 56
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.11 E-value=0.017 Score=61.80 Aligned_cols=193 Identities=13% Similarity=0.221 Sum_probs=122.3
Q ss_pred HHHHHHHHHhhcC--CCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEE-echhHHHHHhcChhh
Q 002869 345 LAAMDELVKMAQT--DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPNR 421 (872)
Q Consensus 345 ~~Am~El~~la~~--~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~-~~~~~LVe~lmD~~~ 421 (872)
.+-.+|.+++|+. ++.-|--..+.+. .+.|.+.. ...|+....=|+.++|. ..+..+.+.|.|.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~W~l~~~~~g---------ikVy~r~~--~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~ 77 (235)
T cd08872 9 DEKVQEQLTYALEDVGADGWQLFAEEGE---------MKVYRREV--EEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDV 77 (235)
T ss_pred HHHHHHHHHHHHccCCCCCCEEEEeCCc---------eEEEEEEC--CCCCceeeeEEEEEEECCCCHHHHHHHHhChhh
Confidence 3567788999865 4557976544321 23343321 11244445678888888 889999999999864
Q ss_pred ---hhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEeecc
Q 002869 422 ---WAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQVLS 498 (872)
Q Consensus 422 ---W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~~~S 498 (872)
|-..| ...+||..-.. ...+ .|..+-.|-
T Consensus 78 r~~Wd~~~-------~~~~vie~l~~-----~~~I------------------------------------~Y~~~k~Pw 109 (235)
T cd08872 78 RMDWETTL-------ENFHVVETLSQ-----DTLI------------------------------------FHQTHKRVW 109 (235)
T ss_pred HHHHHhhh-------heeEEEEecCC-----CCEE------------------------------------EEEEccCCC
Confidence 55543 34444443221 1234 666667888
Q ss_pred ccccceeeEEEeeeceecC-------ceEEEEEEecCCccCCCCCCCccceee---cCCcceEee------c--CCCccE
Q 002869 499 PLVPVREVNFLRFCKQHAE-------GVWAVVDVSIDTIRETSGAPAFVNCRR---LPSGCVVQD------M--PNGYSK 560 (872)
Q Consensus 499 pLvp~Re~~flRyckq~~~-------g~w~VvDvS~d~~~~~~~~~~~~~~~r---~PSGclIq~------~--~nG~sk 560 (872)
| +-.|||.++|+.++.++ +.|+|+..|++.-. -|..+.++|.+. +=.|.+|.+ + .||.|+
T Consensus 110 P-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~-~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ 187 (235)
T cd08872 110 P-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDS-APLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCK 187 (235)
T ss_pred C-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccCcc-CCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEE
Confidence 8 68999999999998876 78999999977432 122235777765 223333332 1 588999
Q ss_pred EEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 002869 561 VTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 602 (872)
Q Consensus 561 VtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce 602 (872)
||++-|++---+--. .+++.....++-++|..|--++.
T Consensus 188 ity~~~~dPgG~iP~----wvvn~~~k~~~P~~l~~~~~~~~ 225 (235)
T cd08872 188 ITYVANVNPGGWAPA----SVLRAVYKREYPKFLKRFTSYVQ 225 (235)
T ss_pred EEEEEEeCCCCCccH----HHHHHHHHhhchHHHHHHHHHHH
Confidence 999999975544332 33555556667777777755543
No 57
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=96.97 E-value=0.015 Score=60.70 Aligned_cols=152 Identities=11% Similarity=0.121 Sum_probs=109.3
Q ss_pred eeccceeE-EechhHHHHHhcChh---hhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHH
Q 002869 398 ASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLII 473 (872)
Q Consensus 398 ASR~~g~V-~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~ 473 (872)
.=|..+++ ...+..+++.|+|.+ +|-..+ ...++|.-.. +-...+
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~-------~~~~~le~~~----~~~~~i-------------------- 94 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA-------VELEVVDEDP----ETGSEI-------------------- 94 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh-------eeEEEEEccC----CCCCEE--------------------
Confidence 45665544 788999999999975 566654 3345554321 102255
Q ss_pred HHHHHHhhhhcccccceeeeEeeccccccceeeEEEeeeceec-CceEEEEEEecCCccCCCCCCCccceeecCCcceEe
Q 002869 474 LVYKKIKIKLFFSFLEMHAELQVLSPLVPVREVNFLRFCKQHA-EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQ 552 (872)
Q Consensus 474 ~~~~~~~~~~~~~~~~M~ael~~~SpLvp~Re~~flRyckq~~-~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq 552 (872)
+|..+..|-|+ -.||+.+.|-..+.. +|.++|+-.|++.-. .|....++|.....+|++|+
T Consensus 95 ----------------~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~-~P~~~g~VRv~~~~~~~~i~ 156 (207)
T cd08911 95 ----------------IYWEMQWPKPF-ANRDYVYVRRYIIDEENKLIVIVSKAVQHPS-YPESPKKVRVEDYWSYMVIR 156 (207)
T ss_pred ----------------EEEEEECCCCC-CCccEEEEEEEEEcCCCCEEEEEEecCCCCC-CCCCCCCEEEEEeEEEEEEE
Confidence 78889999886 889999988776665 567888888887421 12223589999999999999
Q ss_pred ecC---CCccEEEEEEeeeeccc-cccccchhhhccchhHHHHHHHHHHHHHHHH
Q 002869 553 DMP---NGYSKVTWVEHAEYDES-QVHQLYKPLIISGMGFGAQRWVATLQRQCEC 603 (872)
Q Consensus 553 ~~~---nG~skVtwVeH~e~d~~-~v~~l~rpl~~Sg~afGA~rw~atLqR~ce~ 603 (872)
+.. ++.++|+++-|. |+. .+|.- |++.-..-++-.|+..|++-|..
T Consensus 157 p~~~~~~~~~~~~~~~~~--dPgG~IP~~---lvN~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 157 PHKSFDEPGFEFVLTYFD--NPGVNIPSY---ITSWVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred eCCCCCCCCeEEEEEEEe--CCCCccCHH---HHHHHHHhhccHHHHHHHHHHhc
Confidence 984 677999988885 665 36653 46667777888999999888753
No 58
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.86 E-value=0.071 Score=55.81 Aligned_cols=175 Identities=19% Similarity=0.297 Sum_probs=102.8
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 002869 647 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 725 (872)
Q Consensus 647 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~lf~fLrde~~R~eWd~ls~g~~~qe~~~i 725 (872)
..++|... . ..++|+|.+|+..+ +.+...++...++ +||+.+|++|.|...|.+||..... .+.+.++
T Consensus 21 ~~~~W~~~-~--~~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e--~~~ie~~ 89 (222)
T cd08871 21 STDGWKLK-Y--NKNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE--SFDICQL 89 (222)
T ss_pred CCCCcEEE-E--cCCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce--eEEEEEc
Confidence 34589977 2 35789999998632 2344455666666 9999999999999999999975432 2334444
Q ss_pred ccCCCCCceEEEEEeccCC-CCCCceEEEEecccCCCCcEEEE-eecchhhhhhhhcCCCCCCc--cccCCccEEccCCC
Q 002869 726 AKGQDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDGP 801 (872)
Q Consensus 726 a~g~~~gn~vsllr~~~~~-~~~~~~liLQesctd~sgs~vVy-APvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~ 801 (872)
+.++.|.-...+..- -..++.++++..+.+. ++++|. ..|+-+.+ ...+.+| ..+.+||.|-|.+.
T Consensus 90 ----d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~-----P~~~g~VR~~~~~~g~~i~p~~~ 159 (222)
T cd08871 90 ----NPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKY-----PPRKGFVRAISLLTGYLIRPTGP 159 (222)
T ss_pred ----CCCCEEEEEEeECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCC-----CCCCCeEEeEEEccEEEEEECCC
Confidence 344555545444322 3456777777755555 776654 34433221 0112222 25677777777431
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHHh-HhhhhHHHHHHHHHHhc
Q 002869 802 DSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 869 (872)
Q Consensus 802 ~~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tvq~Ik~Al~ 869 (872)
++|.+|.-+|+=.... +..--|.. +....-.++++++.|+.
T Consensus 160 -----------------------~~t~vt~~~~~Dp~G~----IP~~lvN~~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 160 -----------------------KGCTLTYVTQNDPKGS----LPKWVVNKATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred -----------------------CCEEEEEEEecCCCCC----cCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3577777766654432 22222222 23334457788877764
No 59
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.34 E-value=0.0041 Score=78.31 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=57.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 134 kKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
+++.|++++..|+..+..+|....+|...+.+.|...++++++.|++||||-|+|.||...
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 5677889999999999999999999999999999999999999999999999999997665
No 60
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=96.34 E-value=0.18 Score=52.32 Aligned_cols=174 Identities=17% Similarity=0.230 Sum_probs=103.1
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecc
Q 002869 647 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIA 726 (872)
Q Consensus 647 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ls~g~~~qe~~~ia 726 (872)
..++|... . ..++|+|.+|+..+ +.| +..-+...-++.+|+.||+.|.| .|.+||...- ..+.+-.|
T Consensus 17 ~~~~W~~~-~--~~~gi~I~~k~~~~--~~~---l~~~K~~~~v~a~~~~v~~~l~d--~r~~Wd~~~~--~~~vie~i- 83 (197)
T cd08869 17 KSKGWVSV-S--SSDHVELAFKKVDD--GHP---LRLWRASTEVEAPPEEVLQRILR--ERHLWDDDLL--QWKVVETL- 83 (197)
T ss_pred ccCCceEE-e--cCCcEEEEEEeCCC--CCc---EEEEEEEEEeCCCHHHHHHHHHH--HHhccchhhh--eEEEEEEe-
Confidence 46899966 2 36799999999733 222 44557888889999999999988 5899996432 12333333
Q ss_pred cCCCCCceEEEEEeccCCC-CCCceEEEEecccC-CCCcEEEEe-ecchh-hhhhhhcCCCCCC--ccccCCccEEccCC
Q 002869 727 KGQDHGNCVSLLRASAINA-NQSSMLILQETCTD-AAGSLVVYA-PVDIP-AMHVVMNGGDSAY--VALLPSGFAIVPDG 800 (872)
Q Consensus 727 ~g~~~gn~vsllr~~~~~~-~~~~~liLQesctd-~sgs~vVyA-PvD~~-~m~~vm~G~d~~~--v~lLPSGF~I~Pdg 800 (872)
+..+.|-=...+..-+ ...++.+++-...| ..|+++|.. -|+-+ .+ -+.+ +..+++||.|-|.+
T Consensus 84 ---d~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~-------p~g~VR~~~~~~g~~i~p~~ 153 (197)
T cd08869 84 ---DEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPV-------PLGGVRAVVLASRYLIEPCG 153 (197)
T ss_pred ---cCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCC-------CCCCEEEEEEeeeEEEEECC
Confidence 2334433333333222 33456655543333 455665433 23321 11 0123 35688999999854
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHHhHhhhhHHHHHHHHHHhcc
Q 002869 801 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQC 870 (872)
Q Consensus 801 ~~~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~tv~~li~~tvq~Ik~Al~~ 870 (872)
. ++|.+|--.|+=.. ..+..=-+-..++++...|++|+....|
T Consensus 154 ~-----------------------~~t~vty~~~~Dp~----G~iP~wl~N~~~~~~~~~~~~l~~~~~~ 196 (197)
T cd08869 154 S-----------------------GKSRVTHICRVDLR----GRSPEWYNKVYGHLCARELLRIRDSFRQ 196 (197)
T ss_pred C-----------------------CCeEEEEEEEECCC----CCCCceeecchHhHHHHHHHHHHhhccC
Confidence 2 35777765555433 2232223445678888999999998876
No 61
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=96.34 E-value=0.037 Score=59.44 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=83.7
Q ss_pred CCceeeeccceeEEechhHHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHH
Q 002869 393 GFVTEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLI 472 (872)
Q Consensus 393 g~~~EASR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~ 472 (872)
.|++|+. |...+.+|++.|.|.+...+=.+ .+...++|..-. ....+
T Consensus 78 ~fk~e~~-----vd~s~~~v~dlL~D~~~R~~WD~----~~~e~evI~~id-----~d~~i------------------- 124 (235)
T cd08873 78 SFCVELK-----VQTCASDAFDLLSDPFKRPEWDP----HGRSCEEVKRVG-----EDDGI------------------- 124 (235)
T ss_pred EEEEEEE-----ecCCHHHHHHHHhCcchhhhhhh----cccEEEEEEEeC-----CCcEE-------------------
Confidence 3555554 88899999999999865444332 225555554211 12233
Q ss_pred HHHHHHHhhhhcccccceeeeEeeccccccceeeEEEeeeceecCc--eEEEEEEecC--CccCCCCCCCccceeecCCc
Q 002869 473 ILVYKKIKIKLFFSFLEMHAELQVLSPLVPVREVNFLRFCKQHAEG--VWAVVDVSID--TIRETSGAPAFVNCRRLPSG 548 (872)
Q Consensus 473 ~~~~~~~~~~~~~~~~~M~ael~~~SpLvp~Re~~flRyckq~~~g--~w~VvDvS~d--~~~~~~~~~~~~~~~r~PSG 548 (872)
+|..+..|. -+..|||.++|+.++..++ ..+|.=.|+. ...+. +.++|.+.+=.|
T Consensus 125 -----------------yy~~~p~Pw-Pvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~---kgyVR~~~~~gg 183 (235)
T cd08873 125 -----------------YHTTMPSLT-SEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQT---PGYSRTEVACAG 183 (235)
T ss_pred -----------------EEEEcCCCC-CCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCC---CCeEEEEEEeee
Confidence 454444444 4789999999999984443 3777666654 22222 369999999999
Q ss_pred ceEeecCCCccEEEEEEeee
Q 002869 549 CVVQDMPNGYSKVTWVEHAE 568 (872)
Q Consensus 549 clIq~~~nG~skVtwVeH~e 568 (872)
++|++.++|.|+||.+-|++
T Consensus 184 W~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 184 FVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred EEEEECCCCcEEEEEEEEcC
Confidence 99999999999999999986
No 62
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=96.21 E-value=0.22 Score=52.37 Aligned_cols=174 Identities=18% Similarity=0.268 Sum_probs=108.3
Q ss_pred CCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeeccc
Q 002869 648 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAK 727 (872)
Q Consensus 648 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ls~g~~~qe~~~ia~ 727 (872)
.++|...- ..+++.|.++++.+..|. -.++.--+|.+|+.||+||.|..+|.+||-.... .+.+-+|
T Consensus 21 ~~gWk~~k---~~~~~~v~~k~~~~~~gk------l~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~--~~iie~I-- 87 (204)
T cd08904 21 TSGWKVVK---TSKKITVSWKPSRKYHGN------LYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQV--YKMLQRI-- 87 (204)
T ss_pred ccCCeEEe---cCCceEEEEEEcCCCCce------EEEEEEEecCCHHHHHHHHhccchhhhhcccccc--eeeEEEe--
Confidence 48999772 348999999998655542 3466777899999999999999999999974432 3444444
Q ss_pred CCCCCceEEEEEeccC--C-CCCCceEEEEeccc-CCCCcEEE-EeecchhhhhhhhcCCCCCCc--cccCCccEEccCC
Q 002869 728 GQDHGNCVSLLRASAI--N-ANQSSMLILQETCT-DAAGSLVV-YAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDG 800 (872)
Q Consensus 728 g~~~gn~vsllr~~~~--~-~~~~~~liLQesct-d~sgs~vV-yAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg 800 (872)
+...+|...+..+. + -..++.+.+|-..- +. +.+++ +.-|+-+.+- .-+.+| -..|+||.|.|..
T Consensus 88 --d~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~-~~~ii~~~sv~Hp~~P-----p~~g~VRa~n~~~G~~i~pl~ 159 (204)
T cd08904 88 --DSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEG-NMNIVSSVSVEYPQCP-----PSSNYIRGYNHPCGYVCSPLP 159 (204)
T ss_pred --CCCcEEEEEecccccCCcccCceEEEEEEEEEeCC-CEEEEEEEecccCCCC-----CCCCcEEEeeeccEEEEEECC
Confidence 66667777665421 1 23457777765322 33 33333 4445544431 124455 3789999999954
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHHh--HhhhhHHHHHHHHHHh
Q 002869 801 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAAL 868 (872)
Q Consensus 801 ~~~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~t--v~~li~~tvq~Ik~Al 868 (872)
.. .++|.||.-+|+=.. -.|..--|.. -.+++. .+...|.||
T Consensus 160 ~~---------------------p~~t~l~~~~~~Dlk----G~lP~~vv~~~~~~~~~~-f~~~~~~~~ 203 (204)
T cd08904 160 EN---------------------PAYSKLVMFVQPELR----GNLSRSVIEKTMPTNLVN-LILDAKDGI 203 (204)
T ss_pred CC---------------------CCceEEEEEEEeCCC----CCCCHHHHHHHhHHHHHH-HHHHHHHhc
Confidence 32 146889998885443 3344433433 233333 666666665
No 63
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=96.17 E-value=0.38 Score=50.86 Aligned_cols=174 Identities=19% Similarity=0.284 Sum_probs=106.7
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhh-hcCCCCcceee
Q 002869 646 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDI-LSNGGPMQEMA 723 (872)
Q Consensus 646 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~lf~fLrde~~R~eWd~-ls~g~~~qe~~ 723 (872)
....+|.... ..++|.|.++|..| |.|.-++. .|+=+| +|.+.|+|.|+| |..||. |.... .+.
T Consensus 24 ek~kgW~~~~---~~~~vev~~kk~~d--~~~l~lwk---~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~---~Ie 89 (205)
T cd08907 24 ERFKGWHSAP---GPDNTELACKKVGD--GHPLRLWK---VSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQ---VIE 89 (205)
T ss_pred hccCCceeec---CCCCcEEEEEeCCC--CCceEEEE---EEEEecCCCHHHHHHHhhc---hhhhhHHHHhhh---hhe
Confidence 4556898762 46899999999754 56655554 455568 999999999999 999996 22222 222
Q ss_pred ecccCCCCCceEEEEEeccCCCCCCceEEEEecc-cC-CCCcEEEEe-ecchhhhhhhhcCCCCCCccccCCccEEccCC
Q 002869 724 HIAKGQDHGNCVSLLRASAINANQSSMLILQETC-TD-AAGSLVVYA-PVDIPAMHVVMNGGDSAYVALLPSGFAIVPDG 800 (872)
Q Consensus 724 ~ia~g~~~gn~vsllr~~~~~~~~~~~liLQesc-td-~sgs~vVyA-PvD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg 800 (872)
.| +..|.|-=.-.+...+-.+.-|++|-++ +| ..|++++.+ -|+=+... ..|| --...|=+||-|=|.|
T Consensus 90 ~L----d~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~p--p~~g--VRa~~l~sgYlIep~g 161 (205)
T cd08907 90 AL----ENNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQ--LEAG--VRAVLLTSQYLIEPCG 161 (205)
T ss_pred ee----cCCCEEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCC--CCCC--eEEEEEeccEEEEECC
Confidence 22 4444454444444444455567777777 34 566666654 13322211 1222 2233566777777744
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHHhH-hhhhHHHHHHHHHHhc
Q 002869 801 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV-NNLISCTVQKIKAALQ 869 (872)
Q Consensus 801 ~~~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~tv-~~li~~tvq~Ik~Al~ 869 (872)
. |+|.||=-.|+=.... .++=+..| ..|++.-+.||+..+.
T Consensus 162 ~-----------------------g~s~ltyi~rvD~rG~-----~P~Wynk~~g~~~a~~l~~ir~sF~ 203 (205)
T cd08907 162 M-----------------------GRSRLTHICRADLRGR-----SPDWYNKVFGHLCAMEVARIRDSFP 203 (205)
T ss_pred C-----------------------CCeEEEEEEEeCCCCC-----CcHHHHHhHHHHHHHHHHHHHhhcc
Confidence 2 5678886666665554 44555555 5667778888888764
No 64
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=95.60 E-value=0.15 Score=55.04 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=81.3
Q ss_pred ceeEEechhHHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhh
Q 002869 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKI 481 (872)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (872)
-+.|...+..|++.|.|.+...+=.+.+ ...+||..-... .. +
T Consensus 86 e~~vd~s~e~v~~lL~D~~~r~~Wd~~~----~e~~vIe~id~~----~~-v---------------------------- 128 (240)
T cd08913 86 EMVVHVDAAQAFLLLSDLRRRPEWDKHY----RSCELVQQVDED----DA-I---------------------------- 128 (240)
T ss_pred EEEEcCCHHHHHHHHhChhhhhhhHhhc----cEEEEEEecCCC----cE-E----------------------------
Confidence 3688999999999999987554443332 444554433211 11 1
Q ss_pred hhcccccceeeeEeeccc--cccceeeEEEeeeceecC-c-eEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCC
Q 002869 482 KLFFSFLEMHAELQVLSP--LVPVREVNFLRFCKQHAE-G-VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNG 557 (872)
Q Consensus 482 ~~~~~~~~M~ael~~~Sp--Lvp~Re~~flRyckq~~~-g-~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG 557 (872)
|-. --+.+ -+..|||-.++...+.++ | .++|+=.|+..-. -|..+.++|.+.+..|++|++.++|
T Consensus 129 ---------Y~v-~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~-~Pp~kgyVR~~~~~ggw~i~p~~~~ 197 (240)
T cd08913 129 ---------YHV-TSPSLSGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPT-HPPTPEYTRGETLCSGFCIWEESDQ 197 (240)
T ss_pred ---------EEE-ecCCCCCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCC-CCCCCCcEEeeecccEEEEEECCCC
Confidence 111 11222 588999999988866543 4 4555555443211 2223469999999999999999999
Q ss_pred ccEEEEEEeeeecccccccc
Q 002869 558 YSKVTWVEHAEYDESQVHQL 577 (872)
Q Consensus 558 ~skVtwVeH~e~d~~~v~~l 577 (872)
.|+||++-|++ +..+|..
T Consensus 198 ~t~vtY~~~~d--PG~LP~~ 215 (240)
T cd08913 198 LTKVSYYNQAT--PGVLPYI 215 (240)
T ss_pred cEEEEEEEEeC--CccccHH
Confidence 99999999987 2345443
No 65
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=95.43 E-value=0.21 Score=52.51 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=73.2
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 002869 646 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 725 (872)
Q Consensus 646 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ls~g~~~qe~~~i 725 (872)
-...+|. +. ...++|+|.++.. +|...|.. + .+ -+++||+.|+++|+|...|.+||...... +|
T Consensus 19 ~~~~gW~-l~--~~~~gI~Vy~k~~---~~~~~~~~-g-e~--~v~as~~~v~~ll~D~~~r~~Wd~~~~~~------~v 82 (205)
T cd08874 19 QATAGWS-YQ--CLEKDVVIYYKVF---NGTYHGFL-G-AG--VIKAPLATVWKAVKDPRTRFLYDTMIKTA------RI 82 (205)
T ss_pred hccCCcE-EE--ecCCCEEEEEecC---CCCcceEE-E-EE--EEcCCHHHHHHHHhCcchhhhhHHhhhhe------ee
Confidence 4567995 42 2468999999864 23444444 3 33 34999999999999999999999854322 22
Q ss_pred ccCCCCCceEEEEEeccCC---C--CCCceEEEEecccCCCCcEEE-EeecchhhhhhhhcCCCC-C--CccccCCccEE
Q 002869 726 AKGQDHGNCVSLLRASAIN---A--NQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDS-A--YVALLPSGFAI 796 (872)
Q Consensus 726 a~g~~~gn~vsllr~~~~~---~--~~~~~liLQesctd~sgs~vV-yAPvD~~~m~~vm~G~d~-~--~v~lLPSGF~I 796 (872)
.+-.+... .|++..... . ..+++.+|+- +.+.-+..++ ---|+-+.+ ...+ . .+..+++|+.|
T Consensus 83 l~~~~~d~--~i~y~~~~~Pwp~~~~~RDfV~l~~-~~~~~~~~vi~~~SV~~~~~-----P~~~~~~VR~~~~~~gw~i 154 (205)
T cd08874 83 HKTFTEDI--CLVYLVHETPLCLLKQPRDFCCLQV-EAKEGELSVVACQSVYDKSM-----PEPGRSLVRGEILPSAWIL 154 (205)
T ss_pred eeecCCCe--EEEEEEecCCCCCCCCCCeEEEEEE-EEECCCcEEEEEEecccccC-----CCCCCCeEEeeeEeeeEEE
Confidence 22223333 344432111 1 4567877774 4433333333 222222111 0001 2 24478888888
Q ss_pred ccC
Q 002869 797 VPD 799 (872)
Q Consensus 797 ~Pd 799 (872)
.|.
T Consensus 155 ~P~ 157 (205)
T cd08874 155 EPV 157 (205)
T ss_pred EEC
Confidence 884
No 66
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=95.13 E-value=1.2 Score=46.47 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=81.0
Q ss_pred HHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhc
Q 002869 635 MTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 714 (872)
Q Consensus 635 M~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ls 714 (872)
++..|...+.. .++|.... ..++|+|.+|+..+ +.+++.+.-..++.|+..+.++|+|-..+.+|+-.+
T Consensus 10 ~~~~~~~~l~~--~~~W~~~~---~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQK---ESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHhcccC--CCCcEEec---cCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 44556666665 67899872 35799999999733 338899999999999999999999999999999753
Q ss_pred CCCCcceeeecccCCCCCceEEEEEeccCC-CCCCceEEEEeccc--CCCCcEEEEe
Q 002869 715 NGGPMQEMAHIAKGQDHGNCVSLLRASAIN-ANQSSMLILQETCT--DAAGSLVVYA 768 (872)
Q Consensus 715 ~g~~~qe~~~ia~g~~~gn~vsllr~~~~~-~~~~~~liLQesct--d~sgs~vVyA 768 (872)
.. .+.+..+ +..+.|..+++...= -+.+++++....|. |..|+++|+.
T Consensus 79 ~~--~~~l~~~----~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~ 129 (215)
T cd08877 79 IR--SKKVKQL----GRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILL 129 (215)
T ss_pred ee--eEEEeec----CCceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEE
Confidence 21 2233333 445778888776321 23456666544444 3677776655
No 67
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=95.05 E-value=0.2 Score=53.99 Aligned_cols=129 Identities=11% Similarity=0.079 Sum_probs=85.8
Q ss_pred eeccceeEEechhHHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHH
Q 002869 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYK 477 (872)
Q Consensus 398 ASR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~ 477 (872)
+-|.-..|...+..|++.|.|.+...+=.+-+ ...+||..-.... .
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~----~e~~vI~qld~~~---~--------------------------- 124 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHF----LSCEVIDWVSEDD---Q--------------------------- 124 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHhh----ceEEEEEEeCCCc---C---------------------------
Confidence 33444477889999999999987544433222 4444443221111 1
Q ss_pred HHhhhhcccccceeeeEeecc-ccccceeeEEEeeeceec-Cce-EEEEEEecCC-ccCCCCCCCccceeecCCcceEee
Q 002869 478 KIKIKLFFSFLEMHAELQVLS-PLVPVREVNFLRFCKQHA-EGV-WAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQD 553 (872)
Q Consensus 478 ~~~~~~~~~~~~M~ael~~~S-pLvp~Re~~flRyckq~~-~g~-w~VvDvS~d~-~~~~~~~~~~~~~~r~PSGclIq~ 553 (872)
+|...-.|- | +..|||-++|=-.+.. +|. ++|.=.|+.. ..+ ..+.++|.+.+=+|++|++
T Consensus 125 ------------vY~~~~pPw~P-vk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~P--p~kg~VRv~~~~~G~~I~p 189 (236)
T cd08914 125 ------------IYHITCPIVNN-DKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVP--PSPQYIRSEIICAGFLIHA 189 (236)
T ss_pred ------------EEEEecCCCCC-CCCceEEEEEEEEecCCCCCEEEEEEeecccccCC--CCCCcEEeEEEEEEEEEEE
Confidence 233222332 3 4899999987766666 885 8888888765 222 2235899999999999999
Q ss_pred cCCCccEEEEEEeeeecccccccc
Q 002869 554 MPNGYSKVTWVEHAEYDESQVHQL 577 (872)
Q Consensus 554 ~~nG~skVtwVeH~e~d~~~v~~l 577 (872)
.++|.|+||.+-|++ +..+|..
T Consensus 190 l~~~~~~VtY~~~~d--Pg~lp~~ 211 (236)
T cd08914 190 IDSNSCTVSYFNQIS--ASILPYF 211 (236)
T ss_pred cCCCcEEEEEEEEcC--Cccchhe
Confidence 999999999999995 4555543
No 68
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.99 E-value=1.8 Score=43.85 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=46.1
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhh
Q 002869 646 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 713 (872)
Q Consensus 646 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~~R~eWd~l 713 (872)
|.+-+|... . ..++|+|.+++..+ +.+..-.++..++.+|+.+|+++.|..+|.+||--
T Consensus 14 ~~~~~W~~~-~--~~~~v~v~~~~~~~------~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~ 72 (195)
T cd08876 14 APDGDWQLV-K--DKDGIKVYTRDVEG------SPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPN 72 (195)
T ss_pred CCCCCCEEE-e--cCCCeEEEEEECCC------CCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh
Confidence 445559977 2 35799999998632 12445577778999999999999999999999963
No 69
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=94.95 E-value=1.5 Score=43.24 Aligned_cols=147 Identities=20% Similarity=0.317 Sum_probs=90.9
Q ss_pred CCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccC
Q 002869 649 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKG 728 (872)
Q Consensus 649 ~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ls~g~~~qe~~~ia~g 728 (872)
.+|..+. ..++|+|..++..+. .+...++..-++.|+..|+++|.|...|.+||...... ..+..+.
T Consensus 15 ~~W~~~~---~~~~v~vy~~~~~~~------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~--~vl~~~~-- 81 (193)
T cd00177 15 EGWKLVK---EKDGVKIYTKPYEDS------GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEF--EVIEEID-- 81 (193)
T ss_pred CCeEEEE---ECCcEEEEEecCCCC------CceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEE--EEEEEeC--
Confidence 5899883 245899988876431 13455667778999999999999999999999633222 2233332
Q ss_pred CCCCceEEEEEeccCC-CCCCceEEEEecccCCCC-cEEEEeecchhhhhhhhcCCCCCCc--cccCCccEEccCCCCCC
Q 002869 729 QDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAG-SLVVYAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDGPDSR 804 (872)
Q Consensus 729 ~~~gn~vsllr~~~~~-~~~~~~liLQesctd~sg-s~vVyAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~~~~ 804 (872)
.+..|.-......- ....+++++..+..+..+ -+++..+||.+.. ..-+.+| .++++||.|-|.+.
T Consensus 82 --~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~-----p~~~~~vR~~~~~~~~~i~~~~~--- 151 (193)
T cd00177 82 --EHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSH-----PKEKGYVRAEIKLSGWIIEPLDP--- 151 (193)
T ss_pred --CCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCC-----CCCCCcEEEEEEccEEEEEECCC---
Confidence 22444444444322 345678888775555533 5666677776521 1112333 36688888888521
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeeEEEeeeeccc
Q 002869 805 GPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVN 838 (872)
Q Consensus 805 ~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~ 838 (872)
++|.+|.-+|+=..
T Consensus 152 --------------------~~~~vt~~~~~D~~ 165 (193)
T cd00177 152 --------------------GKTKVTYVLQVDPK 165 (193)
T ss_pred --------------------CCEEEEEEEeeCCC
Confidence 45778877776544
No 70
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=94.83 E-value=1.6 Score=45.39 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=76.1
Q ss_pred CCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhh-hccccchhhhhhcCCCCcceeeecc
Q 002869 648 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDERLRSEWDILSNGGPMQEMAHIA 726 (872)
Q Consensus 648 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fL-rde~~R~eWd~ls~g~~~qe~~~ia 726 (872)
..+|.... +..++|.|.+|+.. | .|-+ .++...+++||..||++| .|...|.+||..+.. ++.+-.+
T Consensus 23 ~~~W~l~~--~~~~~i~i~~r~~~---~--~~~~--~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~--~~~i~~~- 90 (208)
T cd08868 23 DPGWKLEK--NTTWGDVVYSRNVP---G--VGKV--FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLE--CKIIQVI- 90 (208)
T ss_pred CCCceEEE--ecCCCCEEEEEEcC---C--CceE--EEEEEEEcCCHHHHHHHHHcCccccceecCcccc--eEEEEEe-
Confidence 44899772 23348999999863 3 2333 445556799999999865 588999999975533 2344444
Q ss_pred cCCCCCceEEEEEeccC--C-CCCCceEEEEecccCCCCcEEE-EeecchhhhhhhhcCCCCCC--ccccCCccEEccCC
Q 002869 727 KGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDSAY--VALLPSGFAIVPDG 800 (872)
Q Consensus 727 ~g~~~gn~vsllr~~~~--~-~~~~~~liLQesctd~sgs~vV-yAPvD~~~m~~vm~G~d~~~--v~lLPSGF~I~Pdg 800 (872)
+....|--...... . -..++++.++-..-+. +.++| ...|+-+.+ ..-+.+ +..+++||.|-|.+
T Consensus 91 ---d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~-----P~~~g~VR~~~~~~~~~i~p~~ 161 (208)
T cd08868 91 ---DDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAM-----PPTKNYVRGENGPGCWILRPLP 161 (208)
T ss_pred ---cCCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCCCC-----CCCCCeEEEeccccEEEEEECC
Confidence 23334433222221 1 2345666666533333 55544 444443332 112333 35688999999854
Q ss_pred C
Q 002869 801 P 801 (872)
Q Consensus 801 ~ 801 (872)
.
T Consensus 162 ~ 162 (208)
T cd08868 162 N 162 (208)
T ss_pred C
Confidence 3
No 71
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=94.55 E-value=1.4 Score=46.02 Aligned_cols=106 Identities=16% Similarity=0.263 Sum_probs=63.9
Q ss_pred CCceeccCCCCCCc----EEEEEecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCcceee
Q 002869 649 HKWNKLNAGNVDED----VRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMA 723 (872)
Q Consensus 649 ~~W~~l~~~~~~~d----Vrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~lf~fLrde~~R~eWd~ls~g~~~qe~~ 723 (872)
.+|.... . .++ |+|-+|+.. |. | +.--++...++ +||+.|+++|.|...|.+||... .|.-
T Consensus 22 ~~W~~~~-~--k~~~~~~i~vy~r~~~---~s--~-~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~-----~~~~ 87 (209)
T cd08870 22 QAWQQVM-D--KSTPDMSYQAWRRKPK---GT--G-LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETV-----IEHE 87 (209)
T ss_pred CcceEhh-h--ccCCCceEEEEecccC---CC--C-ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhe-----eeEE
Confidence 6899873 2 345 888887753 22 2 23455666776 89999999999999999999643 3333
Q ss_pred ecccCCCCCceEEEEEeccCC-CCCCceEEEEecccCCCCcEEEEe
Q 002869 724 HIAKGQDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAGSLVVYA 768 (872)
Q Consensus 724 ~ia~g~~~gn~vsllr~~~~~-~~~~~~liLQesctd~sgs~vVyA 768 (872)
-|.+..+.++.|-=......= -..++..+.+..+.|.-+.++|..
T Consensus 88 ~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~ 133 (209)
T cd08870 88 TLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVT 133 (209)
T ss_pred EEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEE
Confidence 333322324444333333211 234566666555566566665544
No 72
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=94.50 E-value=3.9 Score=42.41 Aligned_cols=146 Identities=17% Similarity=0.219 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhc--ccc
Q 002869 629 LKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRD--ERL 706 (872)
Q Consensus 629 lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrd--e~~ 706 (872)
=++.|.|..-+.. ..+|... . ..++|+|.+++..+.. + -..++..-+|.+|+.||++|.| +..
T Consensus 8 ~~~~~~~~~~~~~------~~~W~~~-~--~~~~i~v~~~~~~~~~----~--~~~k~~~~i~~~~~~v~~~l~d~~~~~ 72 (206)
T cd08867 8 EKLANEALQYIND------TDGWKVL-K--TVKNITVSWKPSTEFT----G--HLYRAEGIVDALPEKVIDVIIPPCGGL 72 (206)
T ss_pred HHHHHHHHHHhcC------cCCcEEE-E--cCCCcEEEEecCCCCC----C--EEEEEEEEEcCCHHHHHHHHHhcCccc
Confidence 3455555555542 2789987 2 3478999998653321 2 2246677779999999999999 999
Q ss_pred chhhhhhcCCCCcceeeecccCCCCCceEEEEEeccC--C-CCCCceEEEEecccCCCCcEEEE-eecchhhhhhhhcCC
Q 002869 707 RSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVMNGG 782 (872)
Q Consensus 707 R~eWd~ls~g~~~qe~~~ia~g~~~gn~vsllr~~~~--~-~~~~~~liLQesctd~sgs~vVy-APvD~~~m~~vm~G~ 782 (872)
|.+||...- ..+.+.+| +..+.|........ . -..++...+|-......|++++. .-|+-+.+ ..
T Consensus 73 r~~Wd~~~~--~~~~le~i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~-----p~ 141 (206)
T cd08867 73 RLKWDKSLK--HYEVLEKI----SEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPER-----PP 141 (206)
T ss_pred ccccccccc--ceEEEEEe----CCCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCC-----CC
Confidence 999995432 33555555 33444433322111 1 23456766764323333555444 33433432 11
Q ss_pred CCCCc--cccCCccEEccCC
Q 002869 783 DSAYV--ALLPSGFAIVPDG 800 (872)
Q Consensus 783 d~~~v--~lLPSGF~I~Pdg 800 (872)
-+.+| ..+++||.|-|..
T Consensus 142 ~~~~VR~~~~~~g~~i~p~~ 161 (206)
T cd08867 142 TPGFVRGYNHPCGYFCSPLK 161 (206)
T ss_pred CCCcEEEEeecCEEEEEECC
Confidence 23444 3578888888743
No 73
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=94.31 E-value=2.6 Score=43.03 Aligned_cols=135 Identities=20% Similarity=0.232 Sum_probs=81.6
Q ss_pred CCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhH-HHHhhhccccchhhhhhcCCCCcceeeecc
Q 002869 648 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQR-LFNFLRDERLRSEWDILSNGGPMQEMAHIA 726 (872)
Q Consensus 648 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~-lf~fLrde~~R~eWd~ls~g~~~qe~~~ia 726 (872)
..+|... .+ +.+++.+..|...+ +. .+-..+....++.+++. +.++|.|.+.|.+||...-. ++.+..+.
T Consensus 18 ~~~W~~~-~~-~~~~~~~~~~~~~~--~~---~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~--~~~ie~~~ 88 (206)
T smart00234 18 EPGWVLS-SE-NENGDEVRSILSPG--RS---PGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK--AETLEVID 88 (206)
T ss_pred CCccEEc-cc-cCCcceEEEEccCC--CC---ceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc--EEEEEEEC
Confidence 4679977 32 23445555554321 11 26678889999988886 66899999999999975432 33344442
Q ss_pred cCCCCCceEEEEEeccC--CCCCCceEEEEecccCCCCcEEEEe-ecchhhhhhhhcCCCCCCc--cccCCccEEccCC
Q 002869 727 KGQDHGNCVSLLRASAI--NANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDG 800 (872)
Q Consensus 727 ~g~~~gn~vsllr~~~~--~~~~~~~liLQesctd~sgs~vVyA-PvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg 800 (872)
.++.|-....+.. --...+.+++.....|..++++|.. -++-+.. ...+.+| .++++||.|-|.+
T Consensus 89 ----~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-----p~~~~~VR~~~~~~~~~i~p~~ 158 (206)
T smart00234 89 ----NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-----PPTSGYVRAENLPSGLLIEPLG 158 (206)
T ss_pred ----CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-----CCCCCceEEEEeceEEEEEECC
Confidence 2344444333222 1234677777775566777766654 5554432 1124444 5899999999954
No 74
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=94.22 E-value=1.6 Score=45.75 Aligned_cols=178 Identities=15% Similarity=0.184 Sum_probs=98.6
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhcc--ccchhhhhhcCCCCcceeee
Q 002869 647 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDE--RLRSEWDILSNGGPMQEMAH 724 (872)
Q Consensus 647 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde--~~R~eWd~ls~g~~~qe~~~ 724 (872)
..++|... . ..++|+|.+|++...+|. + .++-.-+|++|+.||++|.|. ..|.+||..+.. ++.+-+
T Consensus 20 ~~~~W~~~-~--~~~~i~v~~~~~~~~~~~----~--~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~--~~vle~ 88 (208)
T cd08903 20 DESGWKTC-R--RTNEVAVSWRPSAEFAGN----L--YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKD--FEVVEA 88 (208)
T ss_pred cccCCEEE-E--cCCCEEEEeeecCCCCCc----E--EEEEEEecCCHHHHHHHHHhccchhhhhhhhcccc--EEEEEE
Confidence 56789977 3 347999999998655553 2 445566799999999999864 478999975533 234444
Q ss_pred cccCCCCCceEEEEEeccC--C-CCCCceEEEEecccCCCCcEEEEe-ecchhhhhhhhcCCCCCCcc--ccCCccEEcc
Q 002869 725 IAKGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYVA--LLPSGFAIVP 798 (872)
Q Consensus 725 ia~g~~~gn~vsllr~~~~--~-~~~~~~liLQesctd~sgs~vVyA-PvD~~~m~~vm~G~d~~~v~--lLPSGF~I~P 798 (872)
| +....|..++.... + -...++++++-...+..|.+++.. -++-+.+ ...+.+|- .-|+|+.|.|
T Consensus 89 i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~-----P~~~~~VR~~~~~~g~~~~~ 159 (208)
T cd08903 89 I----SDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLC-----PPQAGFVRGFNHPCGCFCEP 159 (208)
T ss_pred e----cCCEEEEEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCC-----CCCCCeEEEeeeccEEEEEE
Confidence 4 33334433322111 1 234677776654445556666544 2222221 11234442 4557777766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHHh-HhhhhHHHHHHHHHHhc
Q 002869 799 DGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 869 (872)
Q Consensus 799 dg~~~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tvq~Ik~Al~ 869 (872)
-... .++|.+|.-+|+= |...|...-|.+ +...+-.+.+.++.+|.
T Consensus 160 ~~~~---------------------~~~t~v~~~~~~D----pkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 160 VPGE---------------------PDKTQLVSFFQTD----LSGYLPQTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred CCCC---------------------CCceEEEEEEEec----cCCCcCHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 2111 1346666555543 444444444433 22333347777777664
No 75
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=93.96 E-value=0.077 Score=59.22 Aligned_cols=61 Identities=23% Similarity=0.374 Sum_probs=50.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 134 RKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 134 kKR~RtrfT~eQl~~LE~~F~~---~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
++|++..+.......|+.+..+ .+||+..++..|++++||+..||..||-|.|-|..+-..
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~ 302 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMI 302 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCchH
Confidence 4555567888888888877433 579999999999999999999999999999988775443
No 76
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=93.79 E-value=4.7 Score=42.41 Aligned_cols=130 Identities=14% Similarity=0.159 Sum_probs=79.1
Q ss_pred CCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHH-hhhccccchhhhhhcCCCCcceeeecc
Q 002869 648 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFN-FLRDERLRSEWDILSNGGPMQEMAHIA 726 (872)
Q Consensus 648 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~-fLrde~~R~eWd~ls~g~~~qe~~~ia 726 (872)
..+|..- . ...++|+|.+++.. +. | .+-+.-+-+++||+.||+ .|.|...|.+||.-. ..++.+..|
T Consensus 24 ~~~W~l~-~-~~~~gi~V~s~~~~---~~--~--~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~--~~~~vi~~~- 91 (209)
T cd08906 24 EENWKFE-K-NNDNGDTVYTLEVP---FH--G--KTFILKAFMQCPAELVYQEVILQPEKMVLWNKTV--SACQVLQRV- 91 (209)
T ss_pred ccCCEEE-E-ecCCCCEEEEeccC---CC--C--cEEEEEEEEcCCHHHHHHHHHhChhhccccCccc--hhhhheeec-
Confidence 3589854 1 22478999997652 21 2 233677778999999985 789999999999632 123334443
Q ss_pred cCCCCCceEEEEEeccC---C-CCCCceEEEEecccCCCCcEEEEeecchhhhhhhhcCCCCCCc--cccCCccEEcc
Q 002869 727 KGQDHGNCVSLLRASAI---N-ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVP 798 (872)
Q Consensus 727 ~g~~~gn~vsllr~~~~---~-~~~~~~liLQesctd~sgs~vVyAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I~P 798 (872)
++.+.|. ..+... + -..+++.+++-.+-+..+..++...|+-+.+ ..-+.+| ...++||.|.|
T Consensus 92 ---~~~~~i~-Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~-----P~~~~~VR~~~~~~G~~i~~ 160 (209)
T cd08906 92 ---DDNTLVS-YDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGISTTHSHK-----PPLSKYVRGENGPGGFVVLK 160 (209)
T ss_pred ---cCCcEEE-EEEccccccCCCCCCceEEEEEEEecCCcEEEEEEEEecCCC-----CCCCCeEEEeeeccEEEEEE
Confidence 2333433 233221 1 2456888887655566665555555555443 2234555 35899999998
No 77
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=93.70 E-value=0.64 Score=50.13 Aligned_cols=66 Identities=23% Similarity=0.384 Sum_probs=48.6
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 002869 647 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 725 (872)
Q Consensus 647 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ls~g~~~qe~~~i 725 (872)
..++|..- ...++|+|.++.+ ..+++-..=.-+++|++.||++|.|...|.+||. +...++.+..|
T Consensus 53 ~~~~W~l~---~~k~gIkVytr~~--------s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~--~~~e~evI~~i 118 (235)
T cd08873 53 AKSDWTVA---SSTTSVTLYTLEQ--------DGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDP--HGRSCEEVKRV 118 (235)
T ss_pred ccCCCEEE---EcCCCEEEEEecC--------CCceEEEEEEEecCCHHHHHHHHhCcchhhhhhh--cccEEEEEEEe
Confidence 46799865 2468999999973 1244555555589999999999999999999997 33344555555
No 78
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=93.15 E-value=4.9 Score=42.56 Aligned_cols=172 Identities=20% Similarity=0.302 Sum_probs=99.3
Q ss_pred CceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccCC
Q 002869 650 KWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQ 729 (872)
Q Consensus 650 ~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ls~g~~~qe~~~ia~g~ 729 (872)
+|..++ ..+.+.+..+|. .+|.| +.--+.++=+|.+|..|...|-|+ |.+||...- .++.+..|
T Consensus 28 ~w~~~~---~~~~~el~~~k~--~~gs~---l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~--e~~vIe~l---- 91 (204)
T cd08908 28 GWVSYS---TSEQAELSYKKV--SEGPP---LRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLL--DSKVIEIL---- 91 (204)
T ss_pred CCcccC---CCCcEEEEEecc--CCCCC---cEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhh--heEeeEec----
Confidence 788773 467899999986 35555 567778888898888888777775 999997431 12333333
Q ss_pred CCCceEEEEEeccCCC-CCCceEEEEecccC-CCCcEEEEee-cchhhhhhhhcCCCCCCccccCCccEEccCCCCCCCC
Q 002869 730 DHGNCVSLLRASAINA-NQSSMLILQETCTD-AAGSLVVYAP-VDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGP 806 (872)
Q Consensus 730 ~~gn~vsllr~~~~~~-~~~~~liLQesctd-~sgs~vVyAP-vD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg~~~~~~ 806 (872)
++.+.|-=..++..-+ ...++.+++-..+| .-|++++... |+-+..- .++ --+..+-+|+-|-|.|.
T Consensus 92 d~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P--~~~---VR~~~~~~~w~i~P~g~----- 161 (204)
T cd08908 92 DSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAP--VAG---VRVNVLLSRYLIEPCGS----- 161 (204)
T ss_pred CCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCC--cCc---eEEEEEeeEEEEEECCC-----
Confidence 2333333333333222 23456666443333 4677777665 4433321 000 12223444444544221
Q ss_pred CCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHHhHhhhhHHHHHHHHHHhc
Q 002869 807 LANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 869 (872)
Q Consensus 807 ~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~tv~~li~~tvq~Ik~Al~ 869 (872)
++|-||--.|+= |...+..=-+-....|++.-+.||+..+.
T Consensus 162 ------------------g~t~vtyi~~~D----PgG~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 162 ------------------GKSKLTYMCRID----LRGHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred ------------------CcEEEEEEEEeC----CCCCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 567777544443 44444444555678899999999998764
No 79
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=93.09 E-value=2.7 Score=43.99 Aligned_cols=180 Identities=13% Similarity=0.155 Sum_probs=93.1
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeec-ccChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 002869 647 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWL-PVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 725 (872)
Q Consensus 647 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wL-pv~p~~lf~fLrde~~R~eWd~ls~g~~~qe~~~i 725 (872)
-..+|.... ..++|+|-+|...+ . |+. --++...+ .+|++.+|++|.|...|.+||... +|.--|
T Consensus 19 ~~~~W~l~~---~~~~i~Vy~r~~~~---s--~~~-~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~-----~~~~~l 84 (207)
T cd08911 19 EPDGWEPFI---EKKDMLVWRREHPG---T--GLY-EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA-----VELEVV 84 (207)
T ss_pred cCCCcEEEE---EcCceEEEEeccCC---C--CcE-EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh-----eeEEEE
Confidence 345699773 35789999988632 1 222 34554445 699999999999999999999643 333333
Q ss_pred ccCCCCCceEEEEEeccC-CCCCCceEEEEecccCCC-CcEEEEe-ecchhhhhhhhcCCCCCC--ccccCCccEEccCC
Q 002869 726 AKGQDHGNCVSLLRASAI-NANQSSMLILQETCTDAA-GSLVVYA-PVDIPAMHVVMNGGDSAY--VALLPSGFAIVPDG 800 (872)
Q Consensus 726 a~g~~~gn~vsllr~~~~-~~~~~~~liLQesctd~s-gs~vVyA-PvD~~~m~~vm~G~d~~~--v~lLPSGF~I~Pdg 800 (872)
.+..+.++.|--.+.... --..+++.+-+-...|.. +.++|.. -|+-+.. ..-+.+ |..+.+|+.|-|.+
T Consensus 85 e~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~-----P~~~g~VRv~~~~~~~~i~p~~ 159 (207)
T cd08911 85 DEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSY-----PESPKKVRVEDYWSYMVIRPHK 159 (207)
T ss_pred EccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCC-----CCCCCCEEEEEeEEEEEEEeCC
Confidence 332233444433333322 123345555544344543 3434432 1221110 011122 34567777777753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHHh-HhhhhHHHHHHHHHHhc
Q 002869 801 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 869 (872)
Q Consensus 801 ~~~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tvq~Ik~Al~ 869 (872)
.. ..+|+-++.-++ . .|...|..--|.. +...+-.++++++.|..
T Consensus 160 ~~--------------------~~~~~~~~~~~~--~--dPgG~IP~~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 160 SF--------------------DEPGFEFVLTYF--D--NPGVNIPSYITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred CC--------------------CCCCeEEEEEEE--e--CCCCccCHHHHHHHHHhhccHHHHHHHHHHh
Confidence 21 013555554333 2 3444443322211 23333348888888764
No 80
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=93.07 E-value=0.68 Score=49.99 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=47.1
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhc
Q 002869 646 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 714 (872)
Q Consensus 646 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ls 714 (872)
...++|..- ...++|+|-++. |.. +++-..-+-+++|++.+|++|.|...|.+||...
T Consensus 53 a~~~~W~l~---~dkdgIkVytr~-----~s~---~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~ 110 (236)
T cd08914 53 AAKSGWEVT---STVEKIKIYTLE-----EHD---VLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHF 110 (236)
T ss_pred cccCCCEEE---EccCCEEEEEec-----CCC---cEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhh
Confidence 346899865 246899999994 221 5788888888999999999999999999999743
No 81
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=92.07 E-value=0.032 Score=47.50 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=31.3
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchh
Q 002869 145 QIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (872)
Q Consensus 145 Ql~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRR 186 (872)
.++.|++.|...+++...+...|..+.+|+..||+.||-.|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 456799999999999999999999999999999999996554
No 82
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=91.08 E-value=6.5 Score=39.91 Aligned_cols=151 Identities=20% Similarity=0.325 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhh
Q 002869 631 LAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEW 710 (872)
Q Consensus 631 LaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~~R~eW 710 (872)
|+++....|.. ......++|.... + .++..+.+++... +.+ ..+...++..-++.++..+|..|.|... +|
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~~-~--~~~~~~~~~~~~~--~~~-~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~W 72 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLYK-D--KKNGDVYYKKVSP--SDS-CPIKMFKAEGVVPASPEQVVEDLLDDRE--QW 72 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEEE-E--ETTTCEEEEEEEC--SSS-TSCEEEEEEEEESSCHHHHHHHHHCGGG--HH
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEeE-c--cCCCeEEEEEeCc--ccc-ccceEEEEEEEEcCChHHHHHHHHhhHh--hc
Confidence 45555555553 3356777999883 2 2333333444321 111 1355678888899888877777777444 99
Q ss_pred hhhcCCCCcceeeecccCCCCCceEEEEEeccCC---CCCCceEEEEecccCCCCcEEEE-eecchhhhhhhhcCCCCCC
Q 002869 711 DILSNGGPMQEMAHIAKGQDHGNCVSLLRASAIN---ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVMNGGDSAY 786 (872)
Q Consensus 711 d~ls~g~~~qe~~~ia~g~~~gn~vsllr~~~~~---~~~~~~liLQesctd~sgs~vVy-APvD~~~m~~vm~G~d~~~ 786 (872)
|...- .++.+..| +++..|.....+..- -..++.++++-...+..|.++|. ..||-+..... .+.+
T Consensus 73 d~~~~--~~~~le~~----~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~----~~~~ 142 (206)
T PF01852_consen 73 DKMCV--EAEVLEQI----DEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN----SKGY 142 (206)
T ss_dssp STTEE--EEEEEEEE----ETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-----TTS
T ss_pred ccchh--hheeeeec----CCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeecccccccc----ccCc
Confidence 97543 23344444 233555555444322 22356777766444566765554 57877764322 2445
Q ss_pred cc--ccCCccEEccCC
Q 002869 787 VA--LLPSGFAIVPDG 800 (872)
Q Consensus 787 v~--lLPSGF~I~Pdg 800 (872)
|- +++|||.|-|.+
T Consensus 143 VR~~~~~s~~~i~~~~ 158 (206)
T PF01852_consen 143 VRAEILISGWVIRPLG 158 (206)
T ss_dssp EEEEEESEEEEEEEET
T ss_pred ceeeeeeEeEEEEEcc
Confidence 54 899999999943
No 83
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=89.57 E-value=1.9 Score=42.67 Aligned_cols=86 Identities=24% Similarity=0.302 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHh-CCccceEEeeccchhhHHHHHHHHHhhhhhHHHhHHHHHhhhhHHh
Q 002869 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRL-CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (872)
Q Consensus 139 trfT~eQl~~LE~~F~~~~yPs~~qReeLA~~L-gLs~rQVKvWFQNRRaK~Kkqq~r~e~~~L~qenekL~~En~~l~e 217 (872)
.+|+.+++..+ .-.+|=+.| |++...|-.|=|.||+-.-|-.........-++.+.|..++..+.+
T Consensus 22 d~lsDd~Lvsm-------------SVReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~q 88 (135)
T KOG4196|consen 22 DRLSDDELVSM-------------SVRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQ 88 (135)
T ss_pred CCcCHHHHHHh-------------hHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888887665 123444444 8888888889999987654433333333333334445555555554
Q ss_pred hhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHHH
Q 002869 218 AMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (872)
Q Consensus 218 a~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~~ 258 (872)
+..+|+.||++++.|++-..
T Consensus 89 ---------------------qv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 89 ---------------------QVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 44567778888877776443
No 84
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=89.12 E-value=11 Score=40.87 Aligned_cols=186 Identities=19% Similarity=0.169 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCC------CCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhh
Q 002869 628 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNV------DEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL 701 (872)
Q Consensus 628 ~lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~------~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fL 701 (872)
|+.||..-++.|- .+.-.+.--|.+.. +.+ ++=.|++.+.. .+..+...+..+-++-.+.+.|..|.++|
T Consensus 4 ~~~lA~~am~Ell-~~a~~~~plWi~~~-~~~~~~l~~dey~~~f~~~~--~~~~~~~~~eASR~~glV~m~~~~lVe~l 79 (229)
T cd08875 4 LLELAEEAMDELL-KLAQGGEPLWIKSP-GMKPEILNPDEYERMFPRHG--GSKPGGFTTEASRACGLVMMNAIKLVEIL 79 (229)
T ss_pred HHHHHHHHHHHHH-HHhccCCCCceecC-CCCccccCHHHHhhcccCcC--CCCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence 8899999999998 45555677899873 432 12223322221 11112345778889999999999999999
Q ss_pred hccccchh-hhhhcCCCCcceeeecccCCCCCceEEEEEeccCC----CCCCceEEEEecccCCCCcEEEEe-ecchhhh
Q 002869 702 RDERLRSE-WDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAIN----ANQSSMLILQETCTDAAGSLVVYA-PVDIPAM 775 (872)
Q Consensus 702 rde~~R~e-Wd~ls~g~~~qe~~~ia~g~~~gn~vsllr~~~~~----~~~~~~liLQesctd~sgs~vVyA-PvD~~~m 775 (872)
.|..++.| .+-.+.-...-++..=..|..++..+.|+..+-.- ..-.+..+|.-|+--.-|+.+|-- .+|-..
T Consensus 80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~- 158 (229)
T cd08875 80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQ- 158 (229)
T ss_pred hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecccc-
Confidence 99555554 33333322222222222223456678887765221 123689999986666788776643 344211
Q ss_pred hhhhcCCCCC---CccccCCccEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccc
Q 002869 776 HVVMNGGDSA---YVALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKL 845 (872)
Q Consensus 776 ~~vm~G~d~~---~v~lLPSGF~I~Pdg~~~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l 845 (872)
+..-+. .--.+||||-|=|-. +|+|-+|+-=++-++..|.-.+
T Consensus 159 ----~~p~~~~~~r~~~~PSGcLIq~~~-----------------------nG~SkVtwVeH~e~d~~~~~~l 204 (229)
T cd08875 159 ----TAPPPASFVRCRRLPSGCLIQDMP-----------------------NGYSKVTWVEHVEVDEKPVHLL 204 (229)
T ss_pred ----cCCCCCCccEEEEecCcEEEEECC-----------------------CCceEEEEEEEEeccCCccccc
Confidence 111111 234899999997721 2568888887777776544443
No 85
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=88.24 E-value=31 Score=36.75 Aligned_cols=174 Identities=18% Similarity=0.229 Sum_probs=95.5
Q ss_pred CCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccC
Q 002869 649 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKG 728 (872)
Q Consensus 649 ~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ls~g~~~qe~~~ia~g 728 (872)
.+|..+. ..+++.+..+|.. +|.|. =--++++=+|.+|..|+..+-+ .|.+||.- +++---|.+-
T Consensus 27 k~w~~~~---~~~~~e~~ykK~~--d~~~l---k~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~-----~~~~~~ie~l 91 (205)
T cd08909 27 KGWISCS---SSDNTELAYKKVG--DGNPL---RLWKVSVEVEAPPSVVLNRVLR--ERHLWDED-----FLQWKVVETL 91 (205)
T ss_pred cCCcccC---CcCCeEEEEecCC--CCCce---EEEEEEEEeCCCHHHHHHHHHh--hHhhHHhh-----cceeEEEEEe
Confidence 4788773 3578889999864 34453 2345688889666666555544 59999963 2222222222
Q ss_pred CCCCceEEEEEeccCCCC-CCceEEEEecccC-CCCcEEE-EeecchhhhhhhhcCCCCCCccccCCccEEccCCCCCCC
Q 002869 729 QDHGNCVSLLRASAINAN-QSSMLILQETCTD-AAGSLVV-YAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRG 805 (872)
Q Consensus 729 ~~~gn~vsllr~~~~~~~-~~~~liLQesctd-~sgs~vV-yAPvD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg~~~~~ 805 (872)
+..+.|=-.+++...+- ..+..+++-..+| ..|++++ +..|+-+.-.. .|+ --+.++=+||.|-|.|.
T Consensus 92 -d~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~--VRa~~~~~gylI~P~~~---- 162 (205)
T cd08909 92 -DKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPL--LGG--VRAVVLDSQYLIEPCGS---- 162 (205)
T ss_pred -CCCcEEEEEEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCC--CCc--EEEEEEcCcEEEEECCC----
Confidence 22244444444433222 3455555553344 5776543 33344332111 111 12445668888888433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHHhHhhhhHHHHHHHHHHhc
Q 002869 806 PLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 869 (872)
Q Consensus 806 ~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~tv~~li~~tvq~Ik~Al~ 869 (872)
|+|.||---|+=.... +..=-+-.+..|++.-+.||+...+
T Consensus 163 -------------------g~trvt~i~~vDpkG~----~P~W~~n~~g~~~~~~~~~~r~sf~ 203 (205)
T cd08909 163 -------------------GKSRLTHICRVDLKGH----SPEWYNKGFGHLCAAEAARIRNSFQ 203 (205)
T ss_pred -------------------CCEEEEEEEEecCCCC----ChHHHHHhHHHHHHHHHHHHHhhcc
Confidence 3576665444433333 2222444578888889999998764
No 86
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=86.72 E-value=5 Score=43.46 Aligned_cols=58 Identities=26% Similarity=0.346 Sum_probs=43.4
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhc
Q 002869 646 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 714 (872)
Q Consensus 646 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ls 714 (872)
...++|..- . ..++|+|-++... . +++-+.-+-+++|++.||++|.|...|.+||...
T Consensus 56 ~~~~~W~l~-~--~~~gI~Vyt~~~s-----~---~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~ 113 (240)
T cd08913 56 VAKDNWVLS-S--EKNQVRLYTLEED-----K---FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHY 113 (240)
T ss_pred cccCCCEEE-E--ccCCEEEEEEeCC-----C---ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhc
Confidence 356689865 2 3589999996531 1 1344555677999999999999999999999743
No 87
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=86.71 E-value=12 Score=35.19 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=27.5
Q ss_pred ceeEEechhHHHHHhcChhhhhhhcccccccceEeEEee
Q 002869 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 440 (872)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 440 (872)
+-.+...+.++.+.|.|.+.|.+-+|.+. .+++++
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~----~~~~~~ 40 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCE----SLEKIG 40 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchh----hccccC
Confidence 34466778899999999999999999864 355554
No 88
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=86.49 E-value=3.4 Score=44.63 Aligned_cols=60 Identities=30% Similarity=0.333 Sum_probs=37.0
Q ss_pred cchhhHHHHHHHHH--hhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHH
Q 002869 183 QNRRTQMKTQLERH--ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 256 (872)
Q Consensus 183 QNRRaK~Kkqq~r~--e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r 256 (872)
|+-|-|.|-+..+- +-..|..+|++|+.||++|++..++. -.+.+.|+.+...|++||..
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L--------------~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESL--------------LAKNHELDSELELLRQELAE 143 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhhHHHHHHHHHHHHHHHh
Confidence 45566555444443 34557788888888888888866532 22455566666666666544
No 89
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=85.98 E-value=1.9 Score=41.57 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=26.8
Q ss_pred CCCCHHHHH-HHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeecc
Q 002869 139 HRHTPQQIQ-ELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (872)
Q Consensus 139 trfT~eQl~-~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQ 183 (872)
++||.++.. .+...+... ....++|+++|+++.++..|.+
T Consensus 11 r~ys~EfK~~aV~~~~~~g-----~sv~evA~e~gIs~~tl~~W~r 51 (121)
T PRK09413 11 RRRTTQEKIAIVQQSFEPG-----MTVSLVARQHGVAASQLFLWRK 51 (121)
T ss_pred CCCCHHHHHHHHHHHHcCC-----CCHHHHHHHHCcCHHHHHHHHH
Confidence 457776543 444444422 2356789999999999999943
No 90
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=85.60 E-value=15 Score=34.95 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=34.5
Q ss_pred EeecCC-CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 002869 551 VQDMPN-GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 602 (872)
Q Consensus 551 Iq~~~n-G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce 602 (872)
+++.++ |.++|+|--|++... . ++-++++.-+-=+.++-++.|.++||
T Consensus 95 ~~~~~~~~~t~v~~~~~~~~~~-~---~p~~l~~~~~~~~~~~~l~~lr~~ae 143 (144)
T cd08866 95 LEPLADGGGTLLTYEVEVKPDF-F---APVFLVEFVLRQDLPTNLLAIRAEAE 143 (144)
T ss_pred EEECCCCCeEEEEEEEEEEeCC-C---CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577777 789999977777653 2 33366766666667788888877776
No 91
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=85.45 E-value=48 Score=34.84 Aligned_cols=195 Identities=10% Similarity=0.105 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhh-cccc
Q 002869 628 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLR-DERL 706 (872)
Q Consensus 628 ~lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLr-de~~ 706 (872)
-.++++.....|-.-. ....+|.... .+.++++|.++... +. | --.+.-.-+|+|++.||++|. |-..
T Consensus 6 y~~~~~~~~~~~~~~~--~~~~~W~~~~--~~~~gi~v~s~~~~---~~--~--k~~k~e~~i~~~~~~l~~~l~~d~e~ 74 (209)
T cd08905 6 YIKQGEEALQKSLSIL--QDQEGWKTEI--VAENGDKVLSKVVP---DI--G--KVFRLEVVVDQPLDNLYSELVDRMEQ 74 (209)
T ss_pred HHHHHHHHHHHHHHHh--ccccCCEEEE--ecCCCCEEEEEEcC---CC--C--cEEEEEEEecCCHHHHHHHHHhchhh
Confidence 3445555555554444 2456899762 23567888886652 22 1 234455677999999996666 5689
Q ss_pred chhhhhhcCCCCcceeeecccCCCCCceEEEEEeccC--C-CCCCceEEEEecccCCCCcEEEEeecchhhhhhhhcCCC
Q 002869 707 RSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGD 783 (872)
Q Consensus 707 R~eWd~ls~g~~~qe~~~ia~g~~~gn~vsllr~~~~--~-~~~~~~liLQesctd~sgs~vVyAPvD~~~m~~vm~G~d 783 (872)
+.+|+..+.. ++.+.+| +...+|.-....+. . -+.+++++++-..-+..+..++.--++.+.+ ..-
T Consensus 75 ~~~W~~~~~~--~~vl~~i----d~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~~~~~~s~~~~~~-----P~~ 143 (209)
T cd08905 75 MGEWNPNVKE--VKILQRI----GKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTCVLAGMATHFGLM-----PEQ 143 (209)
T ss_pred hceecccchH--HHHHhhc----CCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcEEEEEEeecCCCC-----CCC
Confidence 9999975432 2223333 33444444321111 1 3446777766533332222233333333332 111
Q ss_pred CCC--ccccCCccEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHHh-HhhhhHHH
Q 002869 784 SAY--VALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCT 860 (872)
Q Consensus 784 ~~~--v~lLPSGF~I~Pdg~~~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~t-v~~li~~t 860 (872)
+.+ +...+.|+.+.|.+.. .+.|.+|.-+++= |...|..--|.. +-...-.|
T Consensus 144 ~~~VR~~~~~~~w~l~p~~~~---------------------~~~t~v~~~~~~D----pkG~iP~~lvN~~~~~~~~~~ 198 (209)
T cd08905 144 KGFIRAENGPTCIVLRPLAGD---------------------PSKTKLTWLLSID----LKGWLPKSIINQVLSQTQVDF 198 (209)
T ss_pred CCeEEEEeeccEEEEEECCCC---------------------CCceEEEEEEeec----CCCCCCHHHHHHHhHHhHHHH
Confidence 223 2356677777773221 1346666555443 333343333333 23333347
Q ss_pred HHHHHHHhc
Q 002869 861 VQKIKAALQ 869 (872)
Q Consensus 861 vq~Ik~Al~ 869 (872)
++.++..+.
T Consensus 199 ~~~Lr~~~~ 207 (209)
T cd08905 199 ANHLRQRMA 207 (209)
T ss_pred HHHHHHHHh
Confidence 777777665
No 92
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=85.23 E-value=1.5 Score=46.00 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=60.5
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCcceeee
Q 002869 646 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAH 724 (872)
Q Consensus 646 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~lf~fLrde~~R~eWd~ls~g~~~qe~~~ 724 (872)
-.+.+|.... ..++|+|-+|... |. .+.--++...++ ++|+.++++|.|...|.+||...- |+..
T Consensus 22 ~~~~~W~l~~---~~~~i~Vy~r~~~---~s---~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~-----~~~~ 87 (207)
T cd08910 22 LDGAAWELLV---ESSGISIYRLLDE---QS---GLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVK-----ELYE 87 (207)
T ss_pred CCCCCeEEEE---ecCCeEEEEeccC---CC---CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHH-----hhee
Confidence 3445699772 3578999998762 22 234567777889 999999999999999999998532 2222
Q ss_pred cccCCCCCceEEEEEeccC-CCCCCceEEEEe
Q 002869 725 IAKGQDHGNCVSLLRASAI-NANQSSMLILQE 755 (872)
Q Consensus 725 ia~g~~~gn~vsllr~~~~-~~~~~~~liLQe 755 (872)
. . ++++.|--.+.... --..+++.+++.
T Consensus 88 ~--~-~~~~~i~y~~~k~PwPvs~RD~V~~r~ 116 (207)
T cd08910 88 K--E-CDGETVIYWEVKYPFPLSNRDYVYIRQ 116 (207)
T ss_pred e--c-CCCCEEEEEEEEcCCCCCCceEEEEEE
Confidence 1 1 33455555544422 134456766665
No 93
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=85.04 E-value=21 Score=35.34 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=31.4
Q ss_pred cceeEEechhHHHHHhcChhhhhhhcccccccceEeEEeeCCC
Q 002869 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGM 443 (872)
Q Consensus 401 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~ 443 (872)
.+-+|.-.+..+-+++-|..+|-+.||.+ ...+|++.|.
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~----~~~~~l~~~~ 43 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEY----AEAEVLEEDG 43 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccce----EEEEEEEecC
Confidence 44566678889999999999999999886 6677777554
No 94
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=82.65 E-value=27 Score=32.57 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=30.8
Q ss_pred cceeEEechhHHHHHhcChhhhhhhcccccccceEeEEeeCCC
Q 002869 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGM 443 (872)
Q Consensus 401 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~ 443 (872)
.+..|...+.++.+.|.|.+.|.+.+|.+ ..++++..+.
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~----~~~~~~~~~~ 44 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKV----KSVEVLLRDN 44 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcce----EEEEEeccCC
Confidence 35567778899999999999999999985 4566665544
No 95
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=80.03 E-value=0.83 Score=55.52 Aligned_cols=47 Identities=17% Similarity=0.329 Sum_probs=43.4
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHH
Q 002869 146 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (872)
Q Consensus 146 l~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkq 192 (872)
...|...|..|..|+..+...+|.+.||+.+.||.||+++++.....
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv 614 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSV 614 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhh
Confidence 67889999999999999999999999999999999999999887643
No 96
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=79.94 E-value=25 Score=33.37 Aligned_cols=52 Identities=13% Similarity=0.124 Sum_probs=34.7
Q ss_pred cceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 002869 548 GCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 603 (872)
Q Consensus 548 GclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce~ 603 (872)
-..+++.++|.|+|+|.-|++..-. ++.+|++.-+.=.+++-+..+.+.|++
T Consensus 86 ~w~~~p~~~~~T~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 86 EWRFKPLGENACKVEFDLEFEFKSR----LLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred EEEEEECCCCCEEEEEEEEEEECCH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457888889999999999998732 333333333333366777777777764
No 97
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=79.93 E-value=15 Score=39.00 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=60.5
Q ss_pred eeeeEeeccccccceeeEEEee-eceecC-ceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCC---CccEEEEE
Q 002869 490 MHAELQVLSPLVPVREVNFLRF-CKQHAE-GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPN---GYSKVTWV 564 (872)
Q Consensus 490 M~ael~~~SpLvp~Re~~flRy-ckq~~~-g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~n---G~skVtwV 564 (872)
.|.+..+|-| +..|+|..+.. +...+. ..++|+..+++.-.-......++|.+ -=||..|+..|. +-.+|+|+
T Consensus 94 ~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y~SgE~~~~~p~~~~~~~~vew~ 171 (208)
T cd08864 94 VQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-YASVEKISYLPDADGKSNKVEWI 171 (208)
T ss_pred EEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-EEEEEEEEEcCccCCCcCCEEEE
Confidence 6777888888 89999999999 666652 67899999987532110123578887 679999998885 47899999
Q ss_pred Eeeeeccc-cccc
Q 002869 565 EHAEYDES-QVHQ 576 (872)
Q Consensus 565 eH~e~d~~-~v~~ 576 (872)
==...|+. .||.
T Consensus 172 maT~sDpGG~IP~ 184 (208)
T cd08864 172 MATRSDAGGNIPR 184 (208)
T ss_pred EEEeeCCCCcCcH
Confidence 83344444 2443
No 98
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=77.20 E-value=22 Score=38.29 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=77.4
Q ss_pred EechhHHHHHhcCh---hhhhhhcccccccceEeEEee-CCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhh
Q 002869 406 IINSLALVETLMDP---NRWAEMFPCMIARTATTDVIS-SGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKI 481 (872)
Q Consensus 406 ~~~~~~LVe~lmD~---~~W~~~Fp~iVs~a~t~~Vis-~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (872)
.+.|..+-+.++|. .+|-.+ |.+-.|++..+ ||. .|
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~----vi~~e~ie~d~~tg~--------~v---------------------------- 102 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDM----VIELETIEEDPVTGT--------EV---------------------------- 102 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHH----hhhheeeeecCCCCc--------eE----------------------------
Confidence 35688899999995 689887 45556666665 443 56
Q ss_pred hhcccccceeeeEeeccccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEe-----ecCC
Q 002869 482 KLFFSFLEMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQ-----DMPN 556 (872)
Q Consensus 482 ~~~~~~~~M~ael~~~SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq-----~~~n 556 (872)
+|=+.+.|.|+- .||+-++|---+.++..-.||-.|+..-.- |.....+|..-.=||.+|| +-++
T Consensus 103 --------v~w~~kfP~p~~-~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~-P~~~~~vRv~~~~s~~~I~~~~~~~~~~ 172 (219)
T KOG2761|consen 103 --------VYWVKKFPFPMS-NRDYVYVRRWWESDEKDYYIVSKSVQHPSY-PPLKKKVRVTVYRSGWLIRVESRSGDEQ 172 (219)
T ss_pred --------EEEEEeCCcccC-CccEEEEEEEEecCCceEEEEEecccCCCc-CCcCCcEEEEEEEEEEEEEcccccCCCC
Confidence 788999998876 599999987777776777777777663211 1112357888889999999 5555
Q ss_pred C-ccEEEEEEe
Q 002869 557 G-YSKVTWVEH 566 (872)
Q Consensus 557 G-~skVtwVeH 566 (872)
| .|-++|++|
T Consensus 173 ~~~~~~~~~~~ 183 (219)
T KOG2761|consen 173 GCACEYLYFHN 183 (219)
T ss_pred ccEEEEEEEEC
Confidence 5 345555544
No 99
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=77.17 E-value=42 Score=36.16 Aligned_cols=99 Identities=13% Similarity=0.302 Sum_probs=61.6
Q ss_pred cCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEE-EEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCccee
Q 002869 645 ASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEM 722 (872)
Q Consensus 645 ~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl-~A~tS~wLp-v~p~~lf~fLrde~~R~eWd~ls~g~~~qe~ 722 (872)
+-..++|.... ..++|+|-+|...+ . |+++ .-++..-++ |+++.++++|.|...|.+||.-... +..+
T Consensus 22 ~~~~~~W~l~~---~~~gikVy~r~~~~-s----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~--~~vi 91 (235)
T cd08872 22 DVGADGWQLFA---EEGEMKVYRREVEE-D----GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLEN--FHVV 91 (235)
T ss_pred cCCCCCCEEEE---eCCceEEEEEECCC-C----CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhhe--eEEE
Confidence 44555899772 36789999987633 2 3332 356777789 9999999999999999999974322 2333
Q ss_pred eecccCCCCCceEEEEEeccC-CCCCCceEEEEecc
Q 002869 723 AHIAKGQDHGNCVSLLRASAI-NANQSSMLILQETC 757 (872)
Q Consensus 723 ~~ia~g~~~gn~vsllr~~~~-~~~~~~~liLQesc 757 (872)
-+| +..+.|--...+.. -..++++.++.-..
T Consensus 92 e~l----~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~ 123 (235)
T cd08872 92 ETL----SQDTLIFHQTHKRVWPAAQRDALFVSHIR 123 (235)
T ss_pred Eec----CCCCEEEEEEccCCCCCCCcEEEEEEEEE
Confidence 333 23344333333221 12556777765533
No 100
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=75.84 E-value=9.8 Score=34.84 Aligned_cols=61 Identities=30% Similarity=0.438 Sum_probs=43.5
Q ss_pred HHHHHHHhhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHH----HHHHHhhhh
Q 002869 190 KTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGKF 264 (872)
Q Consensus 190 Kkqq~r~e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~----r~~~~a~~~ 264 (872)
|-++.-..-..|+-+.+.|+.+|..+.+.... .......|..||.+||+|.. |++++.+|.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~--------------~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQN--------------AQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555677888889999998888887652 12245569999999999974 677776653
No 101
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=75.33 E-value=5.9 Score=42.05 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=43.6
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcC
Q 002869 646 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSN 715 (872)
Q Consensus 646 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ls~ 715 (872)
-...+|..- . ..+||.|.++++...+|.- - .+---++.-|+.|+||+.+..+|.+||....
T Consensus 20 ~~~~~Wkl~-k--~~~~~~v~~k~~~ef~gkl----~--R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~ 80 (202)
T cd08902 20 ILEEEWRVA-K--KSKDVTVWRKPSEEFGGYL----Y--KAQGVVEDVYNRIVDHIRPGPYRLDWDSLMT 80 (202)
T ss_pred ccccCcEEE-E--eCCCEEEEEecCCcCCCce----E--EEEEEecCCHHHHHHHHhcccchhcccchhh
Confidence 366799966 3 3489999999886555532 1 1111227888999999999999999997543
No 102
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=74.00 E-value=32 Score=32.54 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=22.8
Q ss_pred ceeEEechhHHHHHhcChhhhhhhccc
Q 002869 402 TGMVIINSLALVETLMDPNRWAEMFPC 428 (872)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~ 428 (872)
+.+|.-.+..+-++|-|.++|-+.+|+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~ 30 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT 30 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC
Confidence 445666788999999999999998877
No 103
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=73.62 E-value=2.1 Score=35.80 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=34.0
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccch
Q 002869 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNR 185 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNR 185 (872)
||+|..+|.+|-..+=..++... ...++|+++|++..+|..|..||
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 46677899988887777787765 57789999999999999998875
No 104
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.71 E-value=7 Score=32.07 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=18.6
Q ss_pred HHHHhhhhhHHHhHHHHHhhhhHHh
Q 002869 193 LERHENSLLRQENDKLRAENMSIRD 217 (872)
Q Consensus 193 q~r~e~~~L~qenekL~~En~~l~e 217 (872)
|...++..|++.++.|++++.++..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~ 26 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKK 26 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888766553
No 105
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=72.43 E-value=12 Score=33.60 Aligned_cols=49 Identities=35% Similarity=0.569 Sum_probs=35.2
Q ss_pred HHHhhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHH----HHHHHhhh
Q 002869 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGK 263 (872)
Q Consensus 194 ~r~e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~----r~~~~a~~ 263 (872)
.-.....|+.+++.|+.+|..+.+ +...|+.||.+||+|.. |+.++.+|
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~---------------------e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKE---------------------ENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556677888888888887775 45578899999998875 55665554
No 106
>PRK10724 hypothetical protein; Provisional
Probab=68.13 E-value=1.2e+02 Score=30.65 Aligned_cols=137 Identities=14% Similarity=0.165 Sum_probs=78.2
Q ss_pred ccceeEEechhHHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHH
Q 002869 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKI 479 (872)
Q Consensus 400 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (872)
+.+.+|.-.+..+.+.+.|.++|-+.+|-. ...+|+.....+
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~----~~s~vl~~~~~~---------------------------------- 59 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGC----TGSRVLESTPGQ---------------------------------- 59 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCccc----CeEEEEEecCCE----------------------------------
Confidence 445788889999999999999999998874 555566543311
Q ss_pred hhhhcccccceeeeEeeccccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCcc
Q 002869 480 KIKLFFSFLEMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYS 559 (872)
Q Consensus 480 ~~~~~~~~~~M~ael~~~SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~s 559 (872)
|.|++.+--.-+ ++-+.-|+.-. .++ .+.+ ..++ ++ | +.+=.-.-+++.++|.|
T Consensus 60 ----------~~a~l~v~~~g~--~~~f~srv~~~-~~~-~I~~-~~~~----Gp----F---~~l~g~W~f~p~~~~~t 113 (158)
T PRK10724 60 ----------MTAAVDVSKAGI--SKTFTTRNQLT-SNQ-SILM-QLVD----GP----F---KKLIGGWKFTPLSQEAC 113 (158)
T ss_pred ----------EEEEEEEeeCCc--cEEEEEEEEec-CCC-EEEE-EecC----CC----h---hhccceEEEEECCCCCE
Confidence 234554433322 33332233222 222 3222 1222 22 1 23333334677887789
Q ss_pred EEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 002869 560 KVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 604 (872)
Q Consensus 560 kVtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce~l 604 (872)
+|+.--+.|+.. .||.+++....-=.|++-+.+..+-|+.+
T Consensus 114 ~V~~~l~fef~s----~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~ 154 (158)
T PRK10724 114 RIEFHLDFEFTN----KLIELAFGRVFKELASNMVQAFTVRAKEV 154 (158)
T ss_pred EEEEEEEEEEch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888653 33444443333344667776665556554
No 107
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=68.09 E-value=7.2 Score=43.13 Aligned_cols=42 Identities=33% Similarity=0.450 Sum_probs=26.3
Q ss_pred hhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHH
Q 002869 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (872)
Q Consensus 197 e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~ 255 (872)
+...+++||++|+.|+..+++++. ...+.++.||++||+.|.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~-----------------~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE-----------------ILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 334566777777777776654432 123347788888888664
No 108
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.03 E-value=19 Score=32.36 Aligned_cols=56 Identities=30% Similarity=0.461 Sum_probs=36.9
Q ss_pred HHhhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHH----HHHHHHhhhh
Q 002869 195 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL----DRVCALAGKF 264 (872)
Q Consensus 195 r~e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El----~r~~~~a~~~ 264 (872)
-.--..|+-+.+.|+++|..+.++.. +..-....|..||..||+|- +|++++++|+
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q--------------~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQ--------------NAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445667777778877777766543 11223446889999999986 4777777653
No 109
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=66.43 E-value=1.1e+02 Score=28.39 Aligned_cols=52 Identities=12% Similarity=-0.013 Sum_probs=31.5
Q ss_pred EeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 002869 551 VQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 602 (872)
Q Consensus 551 Iq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce 602 (872)
+++.++|.++||+--|.+......-.++-+++....-=..+++|..|.+++|
T Consensus 87 f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 87 FRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred EEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 4677777899999999887653333344444444443445555555555544
No 110
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=65.70 E-value=1.1e+02 Score=28.15 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=27.4
Q ss_pred ceeEEechhHHHHHhcChhhhhhhcccccccceEeEEee
Q 002869 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 440 (872)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 440 (872)
+..|...+.++-+.|.|...|.+-+|.+ ..+++++
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~----~~~~~~~ 41 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGV----KSVELLS 41 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTE----EEEEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhce----EEEEEcc
Confidence 3467788999999999999999988875 5566666
No 111
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=65.26 E-value=14 Score=34.48 Aligned_cols=47 Identities=30% Similarity=0.482 Sum_probs=36.7
Q ss_pred hhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHHHHHh
Q 002869 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (872)
Q Consensus 200 ~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~~~~a 261 (872)
.+.++++.|+.|.+-|++.++ ..++.-+...||.+|++|+.|++.+-
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve---------------~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVE---------------HNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---------------hCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888888887764 34567789999999999999988753
No 112
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=62.02 E-value=11 Score=40.93 Aligned_cols=39 Identities=36% Similarity=0.527 Sum_probs=22.9
Q ss_pred hhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHH
Q 002869 198 NSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (872)
Q Consensus 198 ~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El 254 (872)
...+++||++|++|+..++.... +.+.++.||.+||+.|
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~------------------~~~~l~~en~~L~~lL 109 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQ------------------ELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHh
Confidence 34456666666666666655432 3345667777777654
No 113
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=59.39 E-value=20 Score=42.96 Aligned_cols=19 Identities=47% Similarity=0.721 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 002869 239 EEQHLRIENARLKDELDRV 257 (872)
Q Consensus 239 e~q~L~~ENarLK~El~r~ 257 (872)
|.++|+.||+.||++|+.+
T Consensus 317 Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 317 ENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 6777888888888887653
No 114
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=58.15 E-value=37 Score=42.25 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=84.1
Q ss_pred CCCCCceeccCCCCCCcEEEEEecC-CCCCCCCCceEEEEEEeeecccChhHHHHhhhccc-cchhhhhhcCCCCcceee
Q 002869 646 STVHKWNKLNAGNVDEDVRVMTRKS-VDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDER-LRSEWDILSNGGPMQEMA 723 (872)
Q Consensus 646 s~~~~W~~l~~~~~~~dVrv~~r~~-~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~-~R~eWd~ls~g~~~qe~~ 723 (872)
+....|.-+.. ..++||+..-. .+.-+...+-++ ++-=-++.+|+.||++|-+.. .|.|||.....+ +-+-
T Consensus 195 ~~~~~Wr~~~c---~NGlRiF~e~~~~~~~~~~~~~~m--KavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~--~vIE 267 (719)
T PLN00188 195 FSRKHWRLLQC---QNGLRIFEELLEVDYLPRSCSRAM--KAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYG--SLVE 267 (719)
T ss_pred cccCCeEEEEe---eccceeehhhhccccccccCCcee--EEEEEecCCHHHHHHHHhccCcccccchhcccce--EEEE
Confidence 55667776632 23567764432 121111122222 223346789999999997433 999999854322 2222
Q ss_pred ecccCCCCCceEEEEEeccC----CCCCCceEEEEecccCCCCcEEE-EeecchhhhhhhhcCCCCCCc--cccCCccEE
Q 002869 724 HIAKGQDHGNCVSLLRASAI----NANQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDSAYV--ALLPSGFAI 796 (872)
Q Consensus 724 ~ia~g~~~gn~vsllr~~~~----~~~~~~~liLQesctd~sgs~vV-yAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I 796 (872)
+| +...+|.--+.... --...+..++.--.-+.-|+|++ |-+|.-+.-- -=+.+| -+-|+||.|
T Consensus 268 ~I----D~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~cP-----P~kG~VRg~~~pGGwiI 338 (719)
T PLN00188 268 EV----DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCG-----PQPGFVRAHLESGGFNI 338 (719)
T ss_pred Ee----cCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCCC-----CCCCeEEEEEeCCEEEE
Confidence 33 44445553343211 12235666666533456677765 4455543310 012333 367999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeeccc
Q 002869 797 VPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVN 838 (872)
Q Consensus 797 ~Pdg~~~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~ 838 (872)
.|.-... ...+|+||--+|+=..
T Consensus 339 sPL~~~~-------------------g~~r~lv~~~lqtDlk 361 (719)
T PLN00188 339 SPLKPRN-------------------GRPRTQVQHLMQIDLK 361 (719)
T ss_pred EECCCCC-------------------CCCceEEEEEEEEccC
Confidence 9953321 0146888877776543
No 115
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=57.12 E-value=1.5e+02 Score=27.11 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=28.1
Q ss_pred ceeEEechhHHHHHhcChhhhhhhcccccccceEeEEeeCC
Q 002869 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSG 442 (872)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g 442 (872)
+..|...+.++-+.|-|.++|.+-.|.+ ..+++++.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~----~~~~~~~~~ 40 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGV----VEVEKITDG 40 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCc----eEEEEcCCC
Confidence 3445667888999999999999999986 456666543
No 116
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.41 E-value=21 Score=42.26 Aligned_cols=57 Identities=28% Similarity=0.383 Sum_probs=28.1
Q ss_pred HHHhhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHHHHHhhh
Q 002869 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGK 263 (872)
Q Consensus 194 ~r~e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~~~~a~~ 263 (872)
...+|..|++||++|+.....+.+.+... +.-+.+++..|...|++|.+++......
T Consensus 78 l~~~N~~l~~eN~~L~~r~~~id~~i~~a-------------v~~~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 78 LISENEALKAENERLQKREQSIDQQIQQA-------------VQSETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------------HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444443333211 1223445556666666666665544433
No 117
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=50.54 E-value=2.1 Score=37.03 Aligned_cols=43 Identities=9% Similarity=0.191 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeec
Q 002869 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 182 (872)
Q Consensus 136 R~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWF 182 (872)
++|++||+++...+=..+. .......++|+++|+++.++..|-
T Consensus 2 ~~r~~ys~e~K~~~v~~~~----~~g~sv~~va~~~gi~~~~l~~W~ 44 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYL----ESGESVSEVAREYGISPSTLYNWR 44 (76)
T ss_dssp -SS----HHHHHHHHHHHH----HHHCHHHHHHHHHTS-HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH----HCCCceEeeecccccccccccHHH
Confidence 4556799987776655551 123567889999999999988884
No 118
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.61 E-value=49 Score=42.06 Aligned_cols=56 Identities=29% Similarity=0.364 Sum_probs=40.1
Q ss_pred hhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHHHHHh
Q 002869 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (872)
Q Consensus 200 ~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~~~~a 261 (872)
.++..++.|..+..-|+++|.+- |.......+.+-.||.++|+|||+-|-|++.+.
T Consensus 336 ~lkEr~deletdlEILKaEmeek------G~~~~~~ss~qfkqlEqqN~rLKdalVrLRDls 391 (1243)
T KOG0971|consen 336 ALKERVDELETDLEILKAEMEEK------GSDGQAASSYQFKQLEQQNARLKDALVRLRDLS 391 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc------CCCCcccchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445556666666788888765 333334457889999999999999999887654
No 119
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=48.49 E-value=24 Score=46.27 Aligned_cols=62 Identities=19% Similarity=0.115 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 134 kKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
.+-.+++++.-|...|..+|+...+|.-.++..+++-|++..|.+-.|||++++++.+...+
T Consensus 444 ~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~ 505 (1406)
T KOG1146|consen 444 PLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPR 505 (1406)
T ss_pred hhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhcccccc
Confidence 34456788999999999999999999999999999999999999999999988888854443
No 120
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=48.13 E-value=52 Score=36.90 Aligned_cols=46 Identities=28% Similarity=0.285 Sum_probs=34.4
Q ss_pred HHHHHHhhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHH
Q 002869 191 TQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRV 257 (872)
Q Consensus 191 kqq~r~e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~ 257 (872)
|+++|.|...+..+.+.|..+|.+||+ +.++|..|-.+||+-+...
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~---------------------qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKD---------------------QASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH
Confidence 445667777788889999999999987 4456777888888766443
No 121
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.84 E-value=51 Score=27.13 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=29.5
Q ss_pred hhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 002869 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (872)
Q Consensus 200 ~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~~~~ 260 (872)
++..+++.|+.....++. +...|..||..|+.|+.++...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~---------------------~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKA---------------------EYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred chHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 356677888888777776 4456888888888888877654
No 122
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=46.83 E-value=18 Score=37.49 Aligned_cols=20 Identities=50% Similarity=0.625 Sum_probs=5.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 002869 239 EEQHLRIENARLKDELDRVC 258 (872)
Q Consensus 239 e~q~L~~ENarLK~El~r~~ 258 (872)
|++.|++|++|||||+..++
T Consensus 25 EKE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777765544
No 123
>smart00338 BRLZ basic region leucin zipper.
Probab=45.93 E-value=78 Score=27.19 Aligned_cols=39 Identities=33% Similarity=0.443 Sum_probs=25.6
Q ss_pred HHhhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHH
Q 002869 195 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (872)
Q Consensus 195 r~e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El 254 (872)
+..-..|..+...|..+|..|+.. ..+|..|+..|++++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~---------------------~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKE---------------------IERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 444455677777777777777753 345667777777665
No 124
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=45.77 E-value=41 Score=31.07 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=33.6
Q ss_pred ceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 002869 549 CVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 602 (872)
Q Consensus 549 clIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce 602 (872)
+-+.+.++|.|+|+|..+.+.... +..+++...+-=+-+..++.|.++||
T Consensus 91 ~~~~~~~~~~t~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 91 IRVTPEGDGGTRVTWTAEFDPPEG----LTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred EEEEECCCCccEEEEEEEEecCCC----cchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 557788887899999999887755 33455555444455666666666553
No 125
>smart00340 HALZ homeobox associated leucin zipper.
Probab=43.93 E-value=24 Score=28.84 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 002869 241 QHLRIENARLKDELDRVCAL 260 (872)
Q Consensus 241 q~L~~ENarLK~El~r~~~~ 260 (872)
..|..||.||+.|++.++++
T Consensus 15 e~LteeNrRL~ke~~eLral 34 (44)
T smart00340 15 ESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999998875
No 126
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=43.77 E-value=1.4e+02 Score=27.62 Aligned_cols=72 Identities=11% Similarity=0.053 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 002869 186 RTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (872)
Q Consensus 186 RaK~Kkqq~r~e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~~~~ 260 (872)
..+.+|..-+++...|+....+-..-+..|..++....++-+. .+..++...+.|..|.|.|..|+.++...
T Consensus 5 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~---~~~~lp~~~keLL~EIA~lE~eV~~LE~~ 76 (88)
T PF14389_consen 5 ALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPS---SPSSLPKKAKELLEEIALLEAEVAKLEQK 76 (88)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC---ccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677788888888887777778888887776554433 33356678888999999999988776543
No 127
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=41.37 E-value=2.3e+02 Score=27.27 Aligned_cols=32 Identities=16% Similarity=0.387 Sum_probs=26.1
Q ss_pred EEechhHHHHHhcChhhhhhhcccccccceEeEEee
Q 002869 405 VIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 440 (872)
Q Consensus 405 V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 440 (872)
+...+.++-+++.|.++|.+-.|.+ ..+++++
T Consensus 9 i~ap~e~Vw~~~tD~~~~~~w~~~v----~~~~~~~ 40 (146)
T cd07824 9 IPAPPEAVWDVLVDAESWPDWWPGV----ERVVELE 40 (146)
T ss_pred ecCCHHHHHHHHhChhhcchhhhce----EEEEEcc
Confidence 4457889999999999999999875 6666666
No 128
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=40.72 E-value=62 Score=35.15 Aligned_cols=49 Identities=27% Similarity=0.442 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHH
Q 002869 188 QMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRV 257 (872)
Q Consensus 188 K~Kkqq~r~e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~ 257 (872)
|.|-+...+++..|..+++.|.++....++.++ +|+.||++|.++++++
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk---------------------~le~E~s~LeE~~~~l 189 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLK---------------------RLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhc
Confidence 444455566777777778888887777777553 5778888887777654
No 129
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=40.17 E-value=1.1e+02 Score=26.20 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=14.0
Q ss_pred HHhhhhhHHHhHHHHHhhhhHHh
Q 002869 195 RHENSLLRQENDKLRAENMSIRD 217 (872)
Q Consensus 195 r~e~~~L~qenekL~~En~~l~e 217 (872)
...-..|....+.|..+|..|+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 33445566667777777666654
No 130
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=38.54 E-value=66 Score=35.83 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=10.5
Q ss_pred CCceeeeccceeEEe
Q 002869 393 GFVTEASRETGMVII 407 (872)
Q Consensus 393 g~~~EASR~~g~V~~ 407 (872)
|-+++.++-++.|.+
T Consensus 158 G~V~~V~~~tS~V~L 172 (284)
T COG1792 158 GKVVEVSKNTSRVLL 172 (284)
T ss_pred EEEEEEcCceeEEEE
Confidence 456677777777766
No 131
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=38.50 E-value=55 Score=31.58 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 002869 239 EEQHLRIENARLKDELDRVCA 259 (872)
Q Consensus 239 e~q~L~~ENarLK~El~r~~~ 259 (872)
+..+|++||+.||+.|.+...
T Consensus 37 EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455677777777777766543
No 132
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=37.68 E-value=78 Score=34.96 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhh
Q 002869 239 EEQHLRIENARLKDELDRVCALAGK 263 (872)
Q Consensus 239 e~q~L~~ENarLK~El~r~~~~a~~ 263 (872)
|.+.|+.++.+||+|+..++.+...
T Consensus 230 en~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 230 ENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666777777777777665443
No 133
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=37.49 E-value=17 Score=35.25 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.5
Q ss_pred EeeecccChhHHHHhhhccccchhhh
Q 002869 686 TSVWLPVSPQRLFNFLRDERLRSEWD 711 (872)
Q Consensus 686 tS~wLpv~p~~lf~fLrde~~R~eWd 711 (872)
-++.+|.||++||+||.|.....+|.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~ 28 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCL 28 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcC
Confidence 47889999999999999999988884
No 134
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=37.11 E-value=31 Score=39.47 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=25.8
Q ss_pred hhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHH
Q 002869 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (872)
Q Consensus 197 e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~ 255 (872)
....+++||++|+.||..|++.+. +.+.+..||++|++.+.
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~------------------~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLK------------------SYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhc
Confidence 345566677777777777766543 34456678887775543
No 135
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=36.53 E-value=57 Score=30.13 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=33.7
Q ss_pred eEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 002869 550 VVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 602 (872)
Q Consensus 550 lIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce 602 (872)
.+.+.+.|.|+|+|.+...- ....++.+++...+.=+-++|++.|.++||
T Consensus 92 ~~~~~~~~~T~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 92 ELEPLGDGGTRFVHRETFSG---LLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEcCCCcEEEEEeeEEEE---EEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 35777677899988642221 122345666777777788888888888876
No 136
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=33.69 E-value=52 Score=37.48 Aligned_cols=21 Identities=43% Similarity=0.520 Sum_probs=11.6
Q ss_pred hhhhhHHHhHHHHHhhhhHHh
Q 002869 197 ENSLLRQENDKLRAENMSIRD 217 (872)
Q Consensus 197 e~~~L~qenekL~~En~~l~e 217 (872)
|+..|++||++|+.||..|+.
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~ 53 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKI 53 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHH
Confidence 444555555555555555554
No 137
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=32.80 E-value=4.6e+02 Score=25.26 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=24.7
Q ss_pred cceeEEechhHHHHHhcChhhhhhhcccc
Q 002869 401 ETGMVIINSLALVETLMDPNRWAEMFPCM 429 (872)
Q Consensus 401 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~i 429 (872)
.+-.|...+..+-+.|.|++.|.+-+|.+
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~ 31 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCLPGA 31 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcCCCc
Confidence 34557788999999999999999998875
No 138
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=31.78 E-value=50 Score=34.34 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHH
Q 002869 221 NPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (872)
Q Consensus 221 ~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~ 255 (872)
+-.||.||++...-+.+-..+.|...-.+|++++.
T Consensus 136 ~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 136 GFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 34699999988776655555555555555555543
No 139
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=31.24 E-value=94 Score=30.26 Aligned_cols=19 Identities=37% Similarity=0.767 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 002869 239 EEQHLRIENARLKDELDRV 257 (872)
Q Consensus 239 e~q~L~~ENarLK~El~r~ 257 (872)
+..+|++||..||+.|+++
T Consensus 37 EN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 37 ENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5567888888888877765
No 140
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=31.11 E-value=38 Score=31.55 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=26.3
Q ss_pred EEEeeecccChhHHHHhhhccccchhhhh
Q 002869 684 AATSVWLPVSPQRLFNFLRDERLRSEWDI 712 (872)
Q Consensus 684 A~tS~wLpv~p~~lf~fLrde~~R~eWd~ 712 (872)
...|+.++.||..||++|.|.....+|.-
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~~~~w~p 32 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEAYPEWSP 32 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhhhhhhCc
Confidence 45788999999999999999999999975
No 141
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=31.06 E-value=1.3e+02 Score=35.57 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhcCCCCceeec
Q 002869 344 ALAAMDELVKMAQTDEPLWIRS 365 (872)
Q Consensus 344 A~~Am~El~~la~~~eplWi~~ 365 (872)
|..||.|+....+..---|.+.
T Consensus 402 ak~al~evtt~lrErl~RWqQI 423 (575)
T KOG4403|consen 402 AKSALSEVTTLLRERLHRWQQI 423 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888877666678664
No 142
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=31.01 E-value=68 Score=30.65 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=31.7
Q ss_pred EeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 002869 551 VQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 602 (872)
Q Consensus 551 Iq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce 602 (872)
+++. +|.|+|+|..+.++.-.....++.+++...+.=..++.+..|.+++|
T Consensus 99 ~~~~-~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 99 LEPV-GGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLE 149 (150)
T ss_pred EEEc-CCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5667 45699999999887755444455555544444344555566655554
No 143
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=30.77 E-value=31 Score=31.74 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.7
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 002869 685 ATSVWLPVSPQRLFNFLRDERLRSEWDI 712 (872)
Q Consensus 685 ~tS~wLpv~p~~lf~fLrde~~R~eWd~ 712 (872)
..++-++.||..||++|.|-....+|.-
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~ 29 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDP 29 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhcc
Confidence 3567789999999999999999999974
No 144
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=30.68 E-value=48 Score=30.64 Aligned_cols=28 Identities=21% Similarity=0.480 Sum_probs=23.6
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 002869 685 ATSVWLPVSPQRLFNFLRDERLRSEWDI 712 (872)
Q Consensus 685 ~tS~wLpv~p~~lf~fLrde~~R~eWd~ 712 (872)
..++-++.||+.||++|.|.....+|.-
T Consensus 5 ~~~~~v~a~~e~V~~~l~d~~~~~~w~~ 32 (139)
T PF10604_consen 5 EVSIEVPAPPEAVWDLLSDPENWPRWWP 32 (139)
T ss_dssp EEEEEESS-HHHHHHHHTTTTGGGGTST
T ss_pred EEEEEECCCHHHHHHHHhChhhhhhhhh
Confidence 4577889999999999999999999963
No 145
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=29.59 E-value=41 Score=31.08 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.3
Q ss_pred EEeeecccChhHHHHhhhccccchhhh
Q 002869 685 ATSVWLPVSPQRLFNFLRDERLRSEWD 711 (872)
Q Consensus 685 ~tS~wLpv~p~~lf~fLrde~~R~eWd 711 (872)
..+.-+++||+.||++|.|..+..+|.
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~ 30 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWH 30 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhc
Confidence 356779999999999999999999996
No 146
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=29.42 E-value=30 Score=32.41 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=24.5
Q ss_pred EeeecccChhHHHHhhhccccchhhhh
Q 002869 686 TSVWLPVSPQRLFNFLRDERLRSEWDI 712 (872)
Q Consensus 686 tS~wLpv~p~~lf~fLrde~~R~eWd~ 712 (872)
.++-++.||++||+||.|.....+|..
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p 31 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIP 31 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhcc
Confidence 567789999999999999999999984
No 147
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=29.30 E-value=1.5e+02 Score=26.51 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 002869 239 EEQHLRIENARLKDELDRV 257 (872)
Q Consensus 239 e~q~L~~ENarLK~El~r~ 257 (872)
+..+|+.|+..|++|++..
T Consensus 48 e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 48 ENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5567777777777777654
No 148
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=28.96 E-value=1.7e+02 Score=32.50 Aligned_cols=44 Identities=27% Similarity=0.314 Sum_probs=31.5
Q ss_pred hHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHHHHHh
Q 002869 201 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (872)
Q Consensus 201 L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~~~~a 261 (872)
.-.....+++||++|++++. .-.+++......|++|.+|++.++
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~-----------------~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELL-----------------KKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456778999999998764 112555555666999999998865
No 149
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=28.84 E-value=1.3e+02 Score=28.73 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=20.3
Q ss_pred eEEeeccchhhHHHHHHHHHhhhhhHHHhHHHHHhhhhHHh
Q 002869 177 QVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (872)
Q Consensus 177 QVKvWFQNRRaK~Kkqq~r~e~~~L~qenekL~~En~~l~e 217 (872)
+...||++.=- .+-.+.+++...+++++++++.+|..|++
T Consensus 16 ~y~l~~g~~G~-~~~~~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 16 QYSLWFGKNGI-LDYWRVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568865411 11112334445566666666666655554
No 150
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=28.80 E-value=2.3e+02 Score=33.88 Aligned_cols=97 Identities=19% Similarity=0.166 Sum_probs=53.7
Q ss_pred CCCCCHHHHHHHHHh-hhcC-CCCCHHHHHHHHHHhCCccceEEeeccchhh-HHHHHHHHHhhhhhHHHhHHHHHhhhh
Q 002869 138 YHRHTPQQIQELESL-FKEC-PHPDEKQRLELSKRLCLETRQVKFWFQNRRT-QMKTQLERHENSLLRQENDKLRAENMS 214 (872)
Q Consensus 138 RtrfT~eQl~~LE~~-F~~~-~yPs~~qReeLA~~LgLs~rQVKvWFQNRRa-K~Kkqq~r~e~~~L~qenekL~~En~~ 214 (872)
--++|.+....|.+. |... .+|-.+.-++.-++.. .=.+|+|. +++|++++.--..|......-.+||++
T Consensus 218 ~L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrvR-------RKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqe 290 (472)
T KOG0709|consen 218 PLVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRVR-------RKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQE 290 (472)
T ss_pred ceeccHHHHHHHHhccCcCcccCCchHHHHHHHHHHH-------HHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHH
Confidence 346888888888765 3332 3455555555555541 11223332 222222222223344444445556665
Q ss_pred HHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHHHHHhh
Q 002869 215 IRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAG 262 (872)
Q Consensus 215 l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~~~~a~ 262 (872)
|+. +.++|..+|.-|-++|.++.++..
T Consensus 291 L~k---------------------kV~~Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 291 LQK---------------------KVEELELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHH---------------------HHHHHhhccHHHHHHHHHHHHHHh
Confidence 554 567888899999999888776543
No 151
>PF15058 Speriolin_N: Speriolin N terminus
Probab=28.12 E-value=85 Score=33.39 Aligned_cols=39 Identities=36% Similarity=0.518 Sum_probs=26.8
Q ss_pred hhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHHHH
Q 002869 199 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (872)
Q Consensus 199 ~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~~~ 259 (872)
.-++.++++|-.||.+||...+ |..||.+||.-|.+.+.
T Consensus 8 eGlrhqierLv~ENeeLKKlVr----------------------LirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVR----------------------LIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH----------------------HHHHHHHHHHHHHHhhc
Confidence 3456667777777777776543 77888888887665553
No 152
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.95 E-value=85 Score=35.96 Aligned_cols=71 Identities=24% Similarity=0.355 Sum_probs=37.0
Q ss_pred eccchhhHHHHHHHHHhhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 002869 181 WFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (872)
Q Consensus 181 WFQNRRaK~Kkqq~r~e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~~~~ 260 (872)
||=-=|-++| +.+....+.|+....|+.+.+.-++.--+ ...+...+.++|+..|.+|+.||-+++.+
T Consensus 54 wff~i~~re~-qlk~aa~~llq~kirk~~e~~eglr~i~e-----------s~~e~q~e~~qL~~qnqkL~nqL~~~~~v 121 (401)
T PF06785_consen 54 WFFAIGRREK-QLKTAAGQLLQTKIRKITEKDEGLRKIRE-----------SVEERQQESEQLQSQNQKLKNQLFHVREV 121 (401)
T ss_pred HHHHhhHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6543333333 33344556666666666665544433110 11133456667777777777777666555
Q ss_pred hhh
Q 002869 261 AGK 263 (872)
Q Consensus 261 a~~ 263 (872)
..|
T Consensus 122 f~k 124 (401)
T PF06785_consen 122 FMK 124 (401)
T ss_pred HHH
Confidence 444
No 153
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=27.88 E-value=37 Score=32.61 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=25.5
Q ss_pred EEEeeecccChhHHHHhhhccccchhh
Q 002869 684 AATSVWLPVSPQRLFNFLRDERLRSEW 710 (872)
Q Consensus 684 A~tS~wLpv~p~~lf~fLrde~~R~eW 710 (872)
|.+++.++.||++||+.|-|+.+-.+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccc
Confidence 678999999999999999999999998
No 154
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=27.68 E-value=44 Score=31.11 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=25.5
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 002869 685 ATSVWLPVSPQRLFNFLRDERLRSEWDI 712 (872)
Q Consensus 685 ~tS~wLpv~p~~lf~fLrde~~R~eWd~ 712 (872)
..++-++.||+.||++|.|.....+|.-
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4678889999999999999999999985
No 155
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=27.42 E-value=40 Score=31.91 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=25.5
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 002869 685 ATSVWLPVSPQRLFNFLRDERLRSEWDI 712 (872)
Q Consensus 685 ~tS~wLpv~p~~lf~fLrde~~R~eWd~ 712 (872)
.+++.++.||.+||+.|.|-.+..+|.-
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p 29 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIP 29 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCc
Confidence 3689999999999999999999999974
No 156
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=26.73 E-value=51 Score=33.29 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHH
Q 002869 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (872)
Q Consensus 139 trfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kk 191 (872)
..+|+.|.+.|+..++. ....++|+.||++...|+.|-++.|.+.|+
T Consensus 5 ~~Lt~rqreVL~lr~~G------lTq~EIAe~LGiS~~tVs~ie~ra~kkLr~ 51 (141)
T PRK03975 5 SFLTERQIEVLRLRERG------LTQQEIADILGTSRANVSSIEKRARENIEK 51 (141)
T ss_pred cCCCHHHHHHHHHHHcC------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999884322 246789999999999999988765555443
No 157
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.11 E-value=1.6e+02 Score=35.38 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=6.8
Q ss_pred CCCHHHHHHHHH
Q 002869 140 RHTPQQIQELES 151 (872)
Q Consensus 140 rfT~eQl~~LE~ 151 (872)
.+++++++.|.-
T Consensus 41 ~ltpee~kalGi 52 (472)
T TIGR03752 41 ELSPEELKALGI 52 (472)
T ss_pred cCCcchhHhcCC
Confidence 456666655543
No 158
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.04 E-value=5.4e+02 Score=27.56 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=10.9
Q ss_pred hHHHhHHHHHhhhhHHhhh
Q 002869 201 LRQENDKLRAENMSIRDAM 219 (872)
Q Consensus 201 L~qenekL~~En~~l~ea~ 219 (872)
..+..+.|+.+|+.+++.+
T Consensus 130 ~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666544
No 159
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=25.98 E-value=42 Score=31.23 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.7
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 002869 685 ATSVWLPVSPQRLFNFLRDERLRSEWDI 712 (872)
Q Consensus 685 ~tS~wLpv~p~~lf~fLrde~~R~eWd~ 712 (872)
..|+-++.||+.||++|.|..+-.+|.-
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~~ 30 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWFG 30 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhhC
Confidence 3577889999999999999999999963
No 160
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=25.58 E-value=1.7e+02 Score=34.56 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=17.1
Q ss_pred cceeecCCcceEeecCCCccEEEEEE
Q 002869 540 VNCRRLPSGCVVQDMPNGYSKVTWVE 565 (872)
Q Consensus 540 ~~~~r~PSGclIq~~~nG~skVtwVe 565 (872)
+|++-.-|+-..+.+|-|+ +||=|+
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ 348 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLD 348 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEe
Confidence 6777766777777777666 766554
No 161
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=25.36 E-value=51 Score=31.24 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.5
Q ss_pred EeeecccChhHHHHhhhccccchhhh
Q 002869 686 TSVWLPVSPQRLFNFLRDERLRSEWD 711 (872)
Q Consensus 686 tS~wLpv~p~~lf~fLrde~~R~eWd 711 (872)
.+.-++.||++||++|.|..+..+|.
T Consensus 4 ~~~~i~ap~e~Vw~~l~d~~~~~~W~ 29 (144)
T cd07825 4 VSRTVDAPAEAVFAVLADPRRHPEID 29 (144)
T ss_pred EEEEEeCCHHHHHHHHhCccccceeC
Confidence 45667899999999999999999996
No 162
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=25.25 E-value=52 Score=30.60 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=26.3
Q ss_pred EEEEeeecccChhHHHHhhhccccchhhhh
Q 002869 683 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 712 (872)
Q Consensus 683 ~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ 712 (872)
+...++-++.||..||+++.|.....+|.-
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~ 31 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTP 31 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccC
Confidence 345688899999999999999999999974
No 163
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=25.17 E-value=75 Score=27.01 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHhhhcCCC--CCHHHHHHHHHHhCCccce
Q 002869 141 HTPQQIQELESLFKECPH--PDEKQRLELSKRLCLETRQ 177 (872)
Q Consensus 141 fT~eQl~~LE~~F~~~~y--Ps~~qReeLA~~LgLs~rQ 177 (872)
+|+.|.+.|...|+..=| |-...-.+||++||+++.-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st 39 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKST 39 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHH
Confidence 588999999999986543 6667778999999998753
No 164
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=25.03 E-value=50 Score=29.24 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=23.7
Q ss_pred EeeecccChhHHHHhhhccccchhhhh
Q 002869 686 TSVWLPVSPQRLFNFLRDERLRSEWDI 712 (872)
Q Consensus 686 tS~wLpv~p~~lf~fLrde~~R~eWd~ 712 (872)
.++-++.||+.||++|.|..+..+|.-
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~ 29 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWSP 29 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhCc
Confidence 466788999999999999999999963
No 165
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.00 E-value=1.7e+02 Score=35.05 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHhhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHH
Q 002869 186 RTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (872)
Q Consensus 186 RaK~Kkqq~r~e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~ 255 (872)
..+.+-.+.+.....+.+++++|+.|.+.+..... +..-.-+.|..||++|+++++
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~--------------dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRG--------------DDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------hHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555566677777777766553332221 111123356788888888874
No 166
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=24.98 E-value=35 Score=36.83 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=91.5
Q ss_pred cCCCCCceeccCCCCCCcEEEEE-ecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCccee
Q 002869 645 ASTVHKWNKLNAGNVDEDVRVMT-RKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEM 722 (872)
Q Consensus 645 ~s~~~~W~~l~~~~~~~dVrv~~-r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~lf~fLrde~~R~eWd~ls~g~~~qe~ 722 (872)
+-.+.+|..+- ...+++|.. |.- +.| | =...|- .-+. ++|..|+||+-|..-|.+||.+.--. ..+
T Consensus 25 ~~~~~~We~~~---~k~~~~i~~q~~~--~~g-~-~~Yk~~---~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~--e~i 92 (219)
T KOG2761|consen 25 CDAGQGWELVM---DKSTPSIWRQRRP--KTG-L-YEYKSR---TVFEDVTPEIVRDVQWDDEYRKKWDDMVIEL--ETI 92 (219)
T ss_pred cCcccchhhhc---ccCCceEEEEccc--CCC-C-EEEEEE---EEEcCCCHHHHHHHHhhhHHHHHHHHHhhhh--eee
Confidence 56778999873 245677766 332 123 2 223333 3456 99999999999999999999853111 111
Q ss_pred eecccCCCCCceEEEEEec--cCCCCCCceEEEEecccCC--CCcEEEEeecchhhhhhhhcCCCCCCccccCCccEEcc
Q 002869 723 AHIAKGQDHGNCVSLLRAS--AINANQSSMLILQETCTDA--AGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVP 798 (872)
Q Consensus 723 ~~ia~g~~~gn~vsllr~~--~~~~~~~~~liLQesctd~--sgs~vVyAPvD~~~m~~vm~G~d~~~v~lLPSGF~I~P 798 (872)
... ...||- |++-. -.-+-.+.-++++-...+. -.-+++---|+-+.+ ---.+.--|-++=||+.|=
T Consensus 93 e~d---~~tg~~--vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~---P~~~~~vRv~~~~s~~~I~- 163 (219)
T KOG2761|consen 93 EED---PVTGTE--VVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSY---PPLKKKVRVTVYRSGWLIR- 163 (219)
T ss_pred eec---CCCCce--EEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCc---CCcCCcEEEEEEEEEEEEE-
Confidence 111 112322 22211 0001112234444333322 222222222222221 0000112334555777775
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHHh-HhhhhHHHHHHHHHHhc
Q 002869 799 DGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 869 (872)
Q Consensus 799 dg~~~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tvq~Ik~Al~ 869 (872)
-+...+ ...||- +.++.-.+|.+.+..+-|.- ++..+-..|.|+-.|+.
T Consensus 164 --~~~~~~----------------~~~~~~----~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~ 213 (219)
T KOG2761|consen 164 --VESRSG----------------DEQGCA----CEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALL 213 (219)
T ss_pred --cccccC----------------CCCccE----EEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHH
Confidence 111100 113443 33445567888888877765 88888889999988875
No 167
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.84 E-value=4.7e+02 Score=22.87 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=22.9
Q ss_pred ceeEEechhHHHHHhcChhhhhhhcccc
Q 002869 402 TGMVIINSLALVETLMDPNRWAEMFPCM 429 (872)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~i 429 (872)
+..|...+..+-+.|.|...|..-+|.+
T Consensus 4 ~~~i~a~~~~v~~~l~d~~~~~~~~~~~ 31 (141)
T cd07812 4 SIEIPAPPEAVWDLLSDPERWPEWSPGL 31 (141)
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhCccc
Confidence 3455556889999999999999988875
No 168
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=24.17 E-value=2.9e+02 Score=24.72 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=22.3
Q ss_pred hhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHHH
Q 002869 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (872)
Q Consensus 200 ~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~~ 258 (872)
.|-..++.|+.||..+++. ...+..|++.|++..+-++
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q---------------------~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQ---------------------EKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666653 3345666666666655443
No 169
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=23.01 E-value=1.5e+02 Score=28.33 Aligned_cols=32 Identities=19% Similarity=0.482 Sum_probs=27.1
Q ss_pred EEEeeecccChhHHHHhhhccccchhhhhhcC
Q 002869 684 AATSVWLPVSPQRLFNFLRDERLRSEWDILSN 715 (872)
Q Consensus 684 A~tS~wLpv~p~~lf~fLrde~~R~eWd~ls~ 715 (872)
...|+-++.||++||+++.|.....+|.-...
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~ 35 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKNWPEWSPWEK 35 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcccCcccCchhh
Confidence 34677789999999999999999999986443
No 170
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=22.79 E-value=24 Score=27.14 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchh
Q 002869 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (872)
Q Consensus 140 rfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRR 186 (872)
.+++.+...++..|... ..-.++|+++|++...|+.|.+.-+
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~~ 51 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRAL 51 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788888888877433 2456789999999999988865443
No 171
>PF15392 Joubert: Joubert syndrome-associated
Probab=22.24 E-value=5.6e+02 Score=29.40 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=20.7
Q ss_pred CCceeeeccceeEEe--chhHHHHHhcCh-hhhhhhc
Q 002869 393 GFVTEASRETGMVII--NSLALVETLMDP-NRWAEMF 426 (872)
Q Consensus 393 g~~~EASR~~g~V~~--~~~~LVe~lmD~-~~W~~~F 426 (872)
++.+|--||--||-= =|.++=.+|.|. ..-.++|
T Consensus 240 ~~~~e~eRe~~vvSpWt~P~eI~~iL~~s~~sllqd~ 276 (329)
T PF15392_consen 240 QVCIEYEREETVVSPWTLPSEIHRILHDSHSSLLQDL 276 (329)
T ss_pred cchhhhhccccccCCCcCcHHHHHHHhcCcchhhccC
Confidence 455677777777642 356667777776 4444444
No 172
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=21.83 E-value=1.5e+02 Score=30.72 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchh
Q 002869 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (872)
Q Consensus 139 trfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRR 186 (872)
..+|+++++++.+.-.++ |....+..||+++|+++.-|.+-.+--.
T Consensus 84 y~Lt~e~i~Eir~LR~~D--P~~wTr~~LAkkF~~S~~fV~~v~~~~~ 129 (164)
T PF12824_consen 84 YHLTPEDIQEIRRLRAED--PEKWTRKKLAKKFNCSPLFVSMVAPAPK 129 (164)
T ss_pred ccCCHHHHHHHHHHHHcC--chHhhHHHHHHHhCCCHHHHHHhcCCCH
Confidence 479999999999988766 6778899999999999876666554433
No 173
>KOG3755 consensus SATB1 matrix attachment region binding protein [Transcription]
Probab=21.25 E-value=20 Score=43.42 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=32.5
Q ss_pred HHhhhcCCCCCHHHHHHHHHHhCC-------ccceEEeeccchhhHHHHHHH
Q 002869 150 ESLFKECPHPDEKQRLELSKRLCL-------ETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 150 E~~F~~~~yPs~~qReeLA~~LgL-------s~rQVKvWFQNRRaK~Kkqq~ 194 (872)
+..|-++++++.....+--+++.+ +.+-|++||.|||.++|+.+.
T Consensus 708 ~~w~~k~~s~s~~~v~eYkee~~~~~~~e~~~~kn~~~~fk~~~ee~~~~k~ 759 (769)
T KOG3755|consen 708 HHWKLKTRSGSWVDVAEYKEEELLMPYEEKFESKNVQFWFKVRREEEKRLKM 759 (769)
T ss_pred hhheecccCchhHHHHHhhHHhhcchhhhhhhhcchHHHHHHHHHHHhhhhc
Confidence 445667777877766665555543 457899999999999997554
No 174
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=21.05 E-value=88 Score=32.79 Aligned_cols=44 Identities=32% Similarity=0.362 Sum_probs=29.2
Q ss_pred HHhhhcC-CCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHHH
Q 002869 215 IRDAMRN-PICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (872)
Q Consensus 215 l~ea~~~-~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~~ 258 (872)
+-+|+.. -.||.||.....-+.+.....|..+-.+|++++++..
T Consensus 125 fdeA~~~~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~l~~~~ 169 (176)
T COG1675 125 FDEAMELGFTCPKCGEDLEEYDSSEEIEELESELDELEEELERND 169 (176)
T ss_pred HHHHHHhCCCCCCCCchhhhccchHHHHHHHHHHHHHHHHHhccc
Confidence 3444443 3599999988776766666666666677777766544
No 175
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=20.79 E-value=1.6e+02 Score=32.14 Aligned_cols=47 Identities=21% Similarity=0.083 Sum_probs=30.0
Q ss_pred hhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHHHHHh
Q 002869 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (872)
Q Consensus 197 e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~~~~a 261 (872)
+....-..+.++++||++|++++. +.+....+...|++|.++++.++
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~~------------------~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKELL------------------ELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445667888889988888654 22223333347788888888765
No 176
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.15 E-value=1.2e+02 Score=29.12 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=20.2
Q ss_pred eccchhhHHHHHHHHHhhhhhHHHhHHHHHhhhhHH
Q 002869 181 WFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIR 216 (872)
Q Consensus 181 WFQNRRaK~Kkqq~r~e~~~L~qenekL~~En~~l~ 216 (872)
|+..+..+.+....++++..++++|+.|+.|.+.++
T Consensus 26 ~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 26 ILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444455555566666666666666655555
Done!