Query 002869
Match_columns 872
No_of_seqs 424 out of 1745
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 5.7E-19 1.9E-23 180.6 18.9 201 337-604 21-229 (231)
2 3a01_A Homeodomain-containing 99.7 1.4E-17 4.8E-22 150.5 4.4 78 129-206 12-89 (93)
3 2kt0_A Nanog, homeobox protein 99.7 1.5E-17 5.1E-22 146.9 3.3 64 130-193 18-81 (84)
4 2dmt_A Homeobox protein BARH-l 99.7 2.7E-17 9.1E-22 144.4 4.5 64 130-193 13-76 (80)
5 2da3_A Alpha-fetoprotein enhan 99.7 2.3E-17 7.7E-22 144.2 3.4 63 131-193 14-76 (80)
6 1nk2_P Homeobox protein VND; h 99.6 7.8E-17 2.7E-21 140.5 5.1 66 131-196 6-71 (77)
7 2cue_A Paired box protein PAX6 99.6 1.1E-16 3.6E-21 140.6 5.4 65 132-196 5-69 (80)
8 2dmq_A LIM/homeobox protein LH 99.6 6.5E-17 2.2E-21 141.6 4.0 65 132-196 5-69 (80)
9 1wh5_A ZF-HD homeobox family p 99.6 5.7E-17 2E-21 143.0 2.9 61 131-191 14-78 (80)
10 1puf_A HOX-1.7, homeobox prote 99.6 2.2E-16 7.6E-21 137.6 5.7 64 132-195 11-74 (77)
11 2dms_A Homeobox protein OTX2; 99.6 6.9E-17 2.4E-21 141.7 2.5 64 132-195 5-68 (80)
12 2dmu_A Homeobox protein goosec 99.6 1E-16 3.5E-21 137.1 3.3 62 132-193 5-66 (70)
13 1fjl_A Paired protein; DNA-bin 99.6 1.3E-16 4.6E-21 140.2 4.1 64 131-194 15-78 (81)
14 2h1k_A IPF-1, pancreatic and d 99.6 1E-16 3.5E-21 134.6 3.0 61 133-193 2-62 (63)
15 2e1o_A Homeobox protein PRH; D 99.6 1.6E-16 5.6E-21 136.0 4.3 62 132-193 5-66 (70)
16 2vi6_A Homeobox protein nanog; 99.6 4.8E-17 1.7E-21 136.0 0.8 60 133-192 2-61 (62)
17 2cra_A Homeobox protein HOX-B1 99.6 1E-16 3.5E-21 137.3 2.6 62 132-193 5-66 (70)
18 2da2_A Alpha-fetoprotein enhan 99.6 9.4E-17 3.2E-21 137.2 2.0 63 131-193 4-66 (70)
19 1wh7_A ZF-HD homeobox family p 99.6 1.1E-16 3.7E-21 141.5 2.4 60 131-191 14-78 (80)
20 1zq3_P PRD-4, homeotic bicoid 99.6 2E-16 6.7E-21 134.9 3.5 63 134-196 2-64 (68)
21 2hdd_A Protein (engrailed home 99.6 1.5E-16 5.1E-21 132.6 2.4 58 134-191 3-60 (61)
22 2djn_A Homeobox protein DLX-5; 99.6 1.6E-16 5.5E-21 136.0 2.3 63 131-193 4-66 (70)
23 1ig7_A Homeotic protein MSX-1; 99.6 2.6E-16 9E-21 129.6 3.4 57 135-191 1-57 (58)
24 2da1_A Alpha-fetoprotein enhan 99.6 2.2E-16 7.7E-21 134.9 2.6 62 132-193 5-66 (70)
25 1ahd_P Antennapedia protein mu 99.6 1.9E-16 6.6E-21 135.1 2.1 61 134-194 2-62 (68)
26 1yz8_P Pituitary homeobox 2; D 99.6 1.4E-16 4.7E-21 135.7 1.1 63 133-195 2-64 (68)
27 1bw5_A ISL-1HD, insulin gene e 99.6 1.7E-16 5.9E-21 134.2 1.0 61 133-193 2-62 (66)
28 1jgg_A Segmentation protein EV 99.6 3.3E-16 1.1E-20 130.2 2.7 58 135-192 2-59 (60)
29 1b8i_A Ultrabithorax, protein 99.6 2.3E-16 7.9E-21 139.0 1.7 62 132-193 18-79 (81)
30 1ftt_A TTF-1 HD, thyroid trans 99.6 3.5E-16 1.2E-20 133.3 2.7 62 134-195 2-63 (68)
31 2l7z_A Homeobox protein HOX-A1 99.6 4.9E-16 1.7E-20 134.3 3.5 62 132-193 5-66 (73)
32 2da4_A Hypothetical protein DK 99.6 3.1E-16 1.1E-20 137.5 2.2 62 132-193 6-71 (80)
33 3nar_A ZHX1, zinc fingers and 99.6 4.4E-16 1.5E-20 141.3 2.7 65 132-196 23-87 (96)
34 2r5y_A Homeotic protein sex co 99.6 3.3E-16 1.1E-20 139.8 1.6 62 132-193 26-87 (88)
35 2m0c_A Homeobox protein arista 99.6 4.3E-16 1.5E-20 134.3 2.1 64 131-194 6-69 (75)
36 3rkq_A Homeobox protein NKX-2. 99.6 6E-16 2.1E-20 126.8 2.9 57 134-190 2-58 (58)
37 1uhs_A HOP, homeodomain only p 99.6 9.7E-16 3.3E-20 131.9 3.9 59 135-193 2-61 (72)
38 2hi3_A Homeodomain-only protei 99.6 1E-15 3.5E-20 132.1 3.9 59 135-193 3-62 (73)
39 2da5_A Zinc fingers and homeob 99.6 5.1E-16 1.7E-20 134.9 2.0 60 136-195 9-68 (75)
40 1akh_A Protein (mating-type pr 99.6 5E-16 1.7E-20 129.2 1.7 59 132-190 3-61 (61)
41 3a02_A Homeobox protein arista 99.6 5.6E-16 1.9E-20 128.8 2.0 57 137-193 2-58 (60)
42 2k40_A Homeobox expressed in E 99.6 4.8E-16 1.6E-20 131.9 1.1 60 135-194 2-61 (67)
43 3a03_A T-cell leukemia homeobo 99.6 9.3E-16 3.2E-20 126.0 2.7 54 139-192 2-55 (56)
44 1b72_A Protein (homeobox prote 99.6 9.2E-16 3.1E-20 139.4 2.9 63 132-194 32-94 (97)
45 2cuf_A FLJ21616 protein; homeo 99.5 2E-15 6.9E-20 136.6 4.0 65 131-195 4-83 (95)
46 1x2n_A Homeobox protein pknox1 99.5 1.8E-15 6.2E-20 130.4 3.0 63 132-194 5-70 (73)
47 2ly9_A Zinc fingers and homeob 99.5 1.5E-15 5.1E-20 131.1 2.1 61 134-194 6-66 (74)
48 2ecc_A Homeobox and leucine zi 99.5 1.9E-15 6.3E-20 132.6 2.6 59 137-195 6-64 (76)
49 2dn0_A Zinc fingers and homeob 99.5 1.1E-15 3.8E-20 132.9 0.6 60 135-194 9-68 (76)
50 1e3o_C Octamer-binding transcr 99.5 1.4E-15 4.9E-20 149.8 0.8 62 131-192 98-159 (160)
51 1puf_B PRE-B-cell leukemia tra 99.5 3.2E-15 1.1E-19 128.9 2.7 62 135-196 2-66 (73)
52 2ecb_A Zinc fingers and homeob 99.5 2.1E-15 7.1E-20 136.0 1.2 56 139-194 16-71 (89)
53 2dmn_A Homeobox protein TGIF2L 99.5 4.7E-15 1.6E-19 131.4 3.4 65 131-195 4-71 (83)
54 1b72_B Protein (PBX1); homeodo 99.5 4.9E-15 1.7E-19 131.6 3.2 61 135-195 2-65 (87)
55 2xsd_C POU domain, class 3, tr 99.5 2.1E-15 7E-20 149.6 0.5 65 131-195 96-160 (164)
56 1au7_A Protein PIT-1, GHF-1; c 99.5 2.5E-15 8.4E-20 146.3 0.8 62 131-192 84-145 (146)
57 2dmp_A Zinc fingers and homeob 99.5 6.4E-15 2.2E-19 132.2 3.3 58 137-194 16-73 (89)
58 2cqx_A LAG1 longevity assuranc 99.5 2.6E-15 8.8E-20 130.0 0.1 58 135-192 9-67 (72)
59 1du6_A PBX1, homeobox protein 99.5 3.9E-15 1.3E-19 125.1 1.2 58 134-191 3-63 (64)
60 1k61_A Mating-type protein alp 99.5 6.7E-15 2.3E-19 122.1 2.4 55 137-191 1-58 (60)
61 2da6_A Hepatocyte nuclear fact 99.5 1.7E-14 5.7E-19 133.0 5.0 65 131-195 3-88 (102)
62 1le8_B Mating-type protein alp 99.5 6.4E-15 2.2E-19 130.4 1.1 59 135-193 3-64 (83)
63 1mnm_C Protein (MAT alpha-2 tr 99.5 1.3E-14 4.5E-19 129.2 3.1 58 133-190 26-86 (87)
64 3d1n_I POU domain, class 6, tr 99.5 1.5E-14 5.3E-19 141.1 3.2 61 131-191 90-150 (151)
65 2l9r_A Homeobox protein NKX-3. 99.4 4.4E-15 1.5E-19 127.9 -1.0 56 140-195 10-65 (69)
66 1wi3_A DNA-binding protein SAT 99.4 2.4E-14 8.2E-19 122.7 3.3 60 131-190 4-64 (71)
67 1lfb_A Liver transcription fac 99.4 1.1E-14 3.6E-19 133.7 -0.1 65 131-195 6-91 (99)
68 3nau_A Zinc fingers and homeob 99.4 3.2E-14 1.1E-18 121.5 2.4 53 141-193 11-63 (66)
69 1x2m_A LAG1 longevity assuranc 99.4 1.6E-14 5.3E-19 122.9 0.2 49 143-191 9-58 (64)
70 3l1p_A POU domain, class 5, tr 99.4 4.3E-14 1.5E-18 138.8 2.8 61 132-192 94-154 (155)
71 2e19_A Transcription factor 8; 99.4 4.1E-14 1.4E-18 119.9 1.2 52 140-191 9-60 (64)
72 2d5v_A Hepatocyte nuclear fact 99.4 5.7E-14 1.9E-18 138.5 1.0 63 131-193 94-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.3 2.4E-13 8.2E-18 115.9 0.9 58 140-197 4-64 (67)
74 1ic8_A Hepatocyte nuclear fact 99.2 9.2E-13 3.1E-17 134.0 -0.8 62 130-191 111-193 (194)
75 3p0l_A Steroidogenic acute reg 99.1 6.2E-10 2.1E-14 113.3 15.8 194 339-602 11-213 (221)
76 1em2_A MLN64 protein; beta bar 99.1 1.8E-09 6.3E-14 110.2 17.9 197 337-604 20-226 (229)
77 2pso_A STAR-related lipid tran 99.1 7.4E-10 2.5E-14 115.0 14.0 175 344-582 34-210 (237)
78 2lk2_A Homeobox protein TGIF1; 99.1 3.1E-11 1.1E-15 108.8 2.9 59 139-197 10-71 (89)
79 2h8r_A Hepatocyte nuclear fact 99.0 3.7E-11 1.3E-15 124.1 1.8 61 130-190 138-219 (221)
80 2da7_A Zinc finger homeobox pr 99.0 1.1E-10 3.6E-15 100.7 1.6 46 143-188 14-59 (71)
81 1mh3_A Maltose binding-A1 home 98.9 8.9E-11 3E-15 127.8 0.4 56 135-190 366-421 (421)
82 1ln1_A PC-TP, phosphatidylchol 98.9 2.7E-08 9.1E-13 99.8 15.0 152 397-604 52-210 (214)
83 1jss_A Stard4, cholesterol-reg 98.8 2.6E-08 9E-13 101.7 14.2 192 339-602 25-222 (224)
84 3fo5_A Thioesterase, adipose a 98.5 3.2E-07 1.1E-11 96.9 11.9 127 400-576 91-221 (258)
85 3qsz_A STAR-related lipid tran 98.4 6.8E-06 2.3E-10 81.0 15.2 152 398-603 28-179 (189)
86 2nzz_A Penetratin conjugated G 98.3 3.8E-08 1.3E-12 75.2 -2.2 21 176-196 1-21 (37)
87 2e3n_A Lipid-transfer protein 98.2 2E-05 6.9E-10 81.7 14.4 200 340-604 24-247 (255)
88 2r55_A STAR-related lipid tran 97.4 0.0076 2.6E-07 61.2 18.2 199 622-869 18-227 (231)
89 3qsz_A STAR-related lipid tran 97.0 0.019 6.4E-07 56.3 15.9 171 649-869 3-178 (189)
90 1jss_A Stard4, cholesterol-reg 96.6 0.037 1.3E-06 56.2 14.9 175 648-869 42-222 (224)
91 3p0l_A Steroidogenic acute reg 96.5 0.07 2.4E-06 53.9 16.2 193 626-869 10-213 (221)
92 1em2_A MLN64 protein; beta bar 96.3 0.12 4.2E-06 52.3 16.6 196 626-869 21-224 (229)
93 1ln1_A PC-TP, phosphatidylchol 96.2 0.11 3.8E-06 51.6 15.8 172 647-869 26-208 (214)
94 2pso_A STAR-related lipid tran 95.7 0.23 7.8E-06 51.3 16.0 175 647-870 48-227 (237)
95 2d4r_A Hypothetical protein TT 95.0 0.34 1.2E-05 43.3 12.8 55 550-605 92-146 (147)
96 3fo5_A Thioesterase, adipose a 94.9 0.11 3.7E-06 54.8 10.4 154 621-801 41-203 (258)
97 3tl1_A WHIE ORF VI, polyketide 87.3 10 0.00035 36.6 13.9 39 400-442 6-44 (159)
98 3tfz_A Cyclase; helix-GRIP, BE 86.2 14 0.00048 35.5 14.2 143 400-606 8-162 (172)
99 2jn6_A Protein CGL2762, transp 81.8 0.32 1.1E-05 42.8 0.4 43 139-184 4-46 (97)
100 2ys9_A Homeobox and leucine zi 81.0 0.35 1.2E-05 41.8 0.3 39 145-183 17-55 (70)
101 3tvq_A Multifunctional cyclase 80.6 21 0.00073 34.7 13.0 58 547-607 93-150 (169)
102 1t17_A Conserved hypothetical 78.1 11 0.00036 35.0 9.5 140 401-604 6-145 (148)
103 2e3n_A Lipid-transfer protein 75.5 2.9 9.9E-05 42.9 5.3 174 628-839 28-218 (255)
104 2jee_A YIIU; FTSZ, septum, coi 73.9 6.1 0.00021 35.1 6.1 52 198-263 22-77 (81)
105 3p9v_A Uncharacterized protein 72.2 45 0.0015 31.6 12.5 140 401-602 11-150 (161)
106 1hjb_A Ccaat/enhancer binding 68.1 9.3 0.00032 34.3 6.1 19 199-217 39-57 (87)
107 1ci6_A Transcription factor AT 65.4 13 0.00044 31.2 6.1 41 194-255 21-61 (63)
108 2j5u_A MREC protein; bacterial 63.6 2.7 9.2E-05 44.2 2.0 16 239-254 44-59 (255)
109 2wt7_B Transcription factor MA 62.1 13 0.00043 33.7 5.7 68 172-260 17-84 (90)
110 1t2k_D Cyclic-AMP-dependent tr 57.5 28 0.00094 28.7 6.7 40 194-254 20-59 (61)
111 2pcs_A Conserved protein; stru 54.1 1.3E+02 0.0046 27.6 15.1 35 402-440 8-42 (162)
112 1gu4_A CAAT/enhancer binding p 52.5 23 0.00079 31.1 5.7 16 201-216 41-56 (78)
113 1l8d_A DNA double-strand break 51.5 18 0.00062 32.7 5.1 13 221-233 47-59 (112)
114 1gd2_E Transcription factor PA 40.4 44 0.0015 28.7 5.5 13 245-257 50-62 (70)
115 2qpv_A Uncharacterized protein 40.4 18 0.00061 35.0 3.4 30 683-712 28-57 (156)
116 1jnm_A Proto-oncogene C-JUN; B 39.9 39 0.0013 28.0 4.9 23 195-217 21-43 (62)
117 3ra3_B P2F; coiled coil domain 38.6 27 0.00091 24.5 3.0 18 241-258 3-20 (28)
118 2d4r_A Hypothetical protein TT 35.1 16 0.00056 32.2 2.0 29 684-712 4-32 (147)
119 2wt7_A Proto-oncogene protein 32.9 1.2E+02 0.0041 25.1 6.9 25 194-218 21-45 (63)
120 3m91_A Proteasome-associated A 32.7 83 0.0028 25.6 5.5 38 200-258 13-50 (51)
121 1hlv_A CENP-B, major centromer 31.8 21 0.00073 32.4 2.3 48 137-187 4-51 (131)
122 3he5_B Synzip2; heterodimeric 31.6 1.2E+02 0.0041 23.9 6.0 22 239-260 25-46 (52)
123 2pcs_A Conserved protein; stru 30.8 19 0.00065 33.5 1.8 28 684-711 5-32 (162)
124 2ns9_A Hypothetical protein AP 30.1 22 0.00075 32.6 2.1 29 683-711 14-42 (157)
125 2elh_A CG11849-PA, LD40883P; s 29.3 18 0.00062 31.2 1.3 43 135-182 17-59 (87)
126 2glo_A Brinker CG9653-PA; prot 27.6 19 0.00064 28.8 1.0 44 139-183 4-47 (59)
127 3ggn_A Uncharacterized protein 26.9 34 0.0012 32.1 2.8 30 683-712 5-34 (155)
128 3s9g_A Protein hexim1; cyclin 26.4 22 0.00077 32.6 1.4 56 191-253 32-87 (104)
129 2leq_A Uncharacterized protein 26.1 40 0.0014 30.1 3.0 28 683-710 6-33 (146)
130 1t17_A Conserved hypothetical 25.7 32 0.0011 31.7 2.3 28 685-712 5-32 (148)
131 1jko_C HIN recombinase, DNA-in 25.3 16 0.00053 27.2 0.1 43 140-187 5-47 (52)
132 3q6a_A Uncharacterized protein 24.1 43 0.0015 30.3 2.9 27 685-711 4-30 (135)
133 3m9b_A Proteasome-associated A 24.0 76 0.0026 33.5 5.0 19 241-259 78-96 (251)
134 2dgc_A Protein (GCN4); basic d 23.9 96 0.0033 25.9 4.7 18 242-259 41-58 (63)
135 2rgt_A Fusion of LIM/homeobox 23.8 3.2 0.00011 40.3 -5.1 31 132-162 134-164 (169)
136 3hug_A RNA polymerase sigma fa 23.7 35 0.0012 29.4 2.1 48 140-192 37-84 (92)
137 1x53_A Activator of 90 kDa hea 23.3 44 0.0015 30.7 2.8 28 684-711 13-40 (145)
138 1uii_A Geminin; human, DNA rep 22.9 1.7E+02 0.0056 26.2 6.1 21 242-262 57-77 (83)
139 2j5u_A MREC protein; bacterial 22.1 50 0.0017 34.5 3.2 19 243-261 41-59 (255)
140 1go4_E MAD1 (mitotic arrest de 21.8 2.7E+02 0.0092 25.5 7.6 24 239-262 69-92 (100)
141 3m48_A General control protein 21.5 81 0.0028 23.6 3.2 22 240-261 9-30 (33)
142 3p51_A Uncharacterized protein 21.5 3.9E+02 0.013 25.4 9.3 123 401-587 6-134 (160)
143 3mzy_A RNA polymerase sigma-H 20.3 49 0.0017 30.1 2.4 47 140-192 109-155 (164)
144 3tfz_A Cyclase; helix-GRIP, BE 20.3 58 0.002 31.1 3.1 29 683-711 6-34 (172)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.81 E-value=5.7e-19 Score=180.61 Aligned_cols=201 Identities=16% Similarity=0.206 Sum_probs=157.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHHHHh
Q 002869 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (872)
Q Consensus 337 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LVe~l 416 (872)
++.++++|++||+||+++++. +..|....+.. +.+.|.+.. .+....+.|..|+|.+.+.+|++.|
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~-~~~W~~~~~~~---------gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~l 86 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRD-TAGWKICREGN---------GVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDCV 86 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CSSCEEEECCS---------SEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCC---------CEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHHH
Confidence 789999999999999999975 47898764321 233443221 1223578899999999999999999
Q ss_pred cC-----hhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhccccccee
Q 002869 417 MD-----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMH 491 (872)
Q Consensus 417 mD-----~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ 491 (872)
|+ +.+|-+.| ..++.++.|+. .-.+ +|
T Consensus 87 ~~~d~~~r~~Wd~~~----~~~~vle~i~~--------~~~i------------------------------------~~ 118 (231)
T 2r55_A 87 KPAVGGLRVKWDENV----TGFEIIQSITD--------TLCV------------------------------------SR 118 (231)
T ss_dssp CC--CCSHHHHCTTC----SEEEEEEECSS--------SEEE------------------------------------EE
T ss_pred HhhCcchhhhhcccc----ceeEEEEEcCC--------CEEE------------------------------------EE
Confidence 77 89998876 35677777741 1233 22
Q ss_pred -eeEeeccccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeee
Q 002869 492 -AELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAE 568 (872)
Q Consensus 492 -ael~~~SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e 568 (872)
.....++++|+.|||.++||+++.++|.|+|+..|++.-. .+..+.++|++.+++||+||+++ +|.|+|||+.|++
T Consensus 119 ~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~D 197 (231)
T 2r55_A 119 TSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPL-CPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTD 197 (231)
T ss_dssp EECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCTT-SCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEE
T ss_pred EEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCCC-CCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeC
Confidence 1123456799999999999999999999999999998432 23234689999999999999998 7899999999999
Q ss_pred eccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 002869 569 YDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 604 (872)
Q Consensus 569 ~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce~l 604 (872)
..-+ +| +.++++.+..++.+|++.|+++|+.+
T Consensus 198 p~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 198 LSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp CCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 8876 55 67899999999999999999999853
No 2
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.68 E-value=1.4e-17 Score=150.54 Aligned_cols=78 Identities=32% Similarity=0.420 Sum_probs=63.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHHhhhhhHHHhH
Q 002869 129 ADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEND 206 (872)
Q Consensus 129 ~~~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~e~~~L~qene 206 (872)
...+++||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++....+....++.+.
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~~ 89 (93)
T 3a01_A 12 RTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANR 89 (93)
T ss_dssp SCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 344567888999999999999999999999999999999999999999999999999999999887766655555443
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-17 Score=146.92 Aligned_cols=64 Identities=30% Similarity=0.302 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 130 ~~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
...++||.|+.||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+||++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4456788899999999999999999999999999999999999999999999999999999754
No 4
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.7e-17 Score=144.45 Aligned_cols=64 Identities=28% Similarity=0.380 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 130 ~~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
...+++|.|+.||.+|+..||..|+.++||+..+|++||.+|+|+++||++||||||+|+||..
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3456688899999999999999999999999999999999999999999999999999999753
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-17 Score=144.19 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
..++||.|++||.+|+..||..|+.++||+..+|++||++|||+++||++||||||+|+||++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 456688899999999999999999999999999999999999999999999999999999754
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.64 E-value=7.8e-17 Score=140.52 Aligned_cols=66 Identities=30% Similarity=0.385 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~ 196 (872)
.++++|.|++||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|+++...
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 456678889999999999999999999999999999999999999999999999999999876654
No 7
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.1e-16 Score=140.62 Aligned_cols=65 Identities=25% Similarity=0.442 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~ 196 (872)
.+++|.|++||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|++++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 45678889999999999999999999999999999999999999999999999999999876554
No 8
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.5e-17 Score=141.56 Aligned_cols=65 Identities=26% Similarity=0.479 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~ 196 (872)
.++||.|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+||+..+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999876554
No 9
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.63 E-value=5.7e-17 Score=143.04 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc----CCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKE----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~----~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kk 191 (872)
..++||+|+.||.+|+..||..|+. ++||+..+|++||.+|||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3567888999999999999999999 999999999999999999999999999999999874
No 10
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.62 E-value=2.2e-16 Score=137.64 Aligned_cols=64 Identities=36% Similarity=0.432 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
++.+++|++||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+|+..+.
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 4567788999999999999999999999999999999999999999999999999999987654
No 11
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=6.9e-17 Score=141.68 Aligned_cols=64 Identities=28% Similarity=0.496 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
.++||+|++||.+|+..||..|+.++||+..+|++||.+|+|+++||++||||||+|+|+++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 4568889999999999999999999999999999999999999999999999999999986543
No 12
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1e-16 Score=137.09 Aligned_cols=62 Identities=29% Similarity=0.556 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
.+.+|.|++||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34577889999999999999999999999999999999999999999999999999999754
No 13
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.62 E-value=1.3e-16 Score=140.16 Aligned_cols=64 Identities=30% Similarity=0.540 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
.++++|.|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4566788999999999999999999999999999999999999999999999999999998653
No 14
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.62 E-value=1e-16 Score=134.60 Aligned_cols=61 Identities=34% Similarity=0.444 Sum_probs=55.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 133 kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
++||.|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 3577889999999999999999999999999999999999999999999999999999753
No 15
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=1.6e-16 Score=135.99 Aligned_cols=62 Identities=35% Similarity=0.420 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
.+.+++|++||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34577888999999999999999999999999999999999999999999999999999764
No 16
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.62 E-value=4.8e-17 Score=136.02 Aligned_cols=60 Identities=32% Similarity=0.368 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHH
Q 002869 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (872)
Q Consensus 133 kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkq 192 (872)
+++|.|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467788999999999999999999999999999999999999999999999999999975
No 17
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=1e-16 Score=137.28 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
.++||+|++||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 45678889999999999999999999999999999999999999999999999999999754
No 18
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.61 E-value=9.4e-17 Score=137.20 Aligned_cols=63 Identities=27% Similarity=0.425 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
..+++++|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+||+.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 345678889999999999999999999999999999999999999999999999999999754
No 19
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.61 E-value=1.1e-16 Score=141.45 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKE-----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~-----~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kk 191 (872)
..++||.|+.||.+|+..|| .|.+ ++||+..+|++||.+|+|+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678889999999999999 7999 999999999999999999999999999999999874
No 20
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.60 E-value=2e-16 Score=134.90 Aligned_cols=63 Identities=37% Similarity=0.520 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHH
Q 002869 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (872)
Q Consensus 134 kKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~ 196 (872)
+|+.|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 477889999999999999999999999999999999999999999999999999999877654
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.60 E-value=1.5e-16 Score=132.63 Aligned_cols=58 Identities=31% Similarity=0.550 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHH
Q 002869 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (872)
Q Consensus 134 kKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kk 191 (872)
+||.|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5778899999999999999999999999999999999999999999999999999986
No 22
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-16 Score=136.03 Aligned_cols=63 Identities=29% Similarity=0.404 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
..+.|++|++||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+||..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 345678899999999999999999999999999999999999999999999999999999743
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.60 E-value=2.6e-16 Score=129.61 Aligned_cols=57 Identities=37% Similarity=0.511 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHH
Q 002869 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kk 191 (872)
||+|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467889999999999999999999999999999999999999999999999999986
No 24
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.59 E-value=2.2e-16 Score=134.85 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
.+++++|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45678899999999999999999999999999999999999999999999999999999754
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.59 E-value=1.9e-16 Score=135.05 Aligned_cols=61 Identities=36% Similarity=0.517 Sum_probs=57.9
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 134 kKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
+||.|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4778899999999999999999999999999999999999999999999999999998654
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.59 E-value=1.4e-16 Score=135.71 Aligned_cols=63 Identities=30% Similarity=0.516 Sum_probs=59.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 133 kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
++++.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+++..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 467888999999999999999999999999999999999999999999999999999986643
No 27
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.58 E-value=1.7e-16 Score=134.25 Aligned_cols=61 Identities=23% Similarity=0.421 Sum_probs=57.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 133 kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
++||+|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4678899999999999999999999999999999999999999999999999999998643
No 28
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.58 E-value=3.3e-16 Score=130.16 Aligned_cols=58 Identities=33% Similarity=0.453 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHH
Q 002869 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkq 192 (872)
||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678899999999999999999999999999999999999999999999999999974
No 29
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.58 E-value=2.3e-16 Score=139.03 Aligned_cols=62 Identities=34% Similarity=0.549 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
+++||.|++||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+||++
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 45677889999999999999999999999999999999999999999999999999999754
No 30
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.58 E-value=3.5e-16 Score=133.31 Aligned_cols=62 Identities=37% Similarity=0.500 Sum_probs=58.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 134 kKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
+||+|++||.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|++.+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 57788999999999999999999999999999999999999999999999999999986543
No 31
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.58 E-value=4.9e-16 Score=134.31 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
.+.+|+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999754
No 32
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.1e-16 Score=137.53 Aligned_cols=62 Identities=11% Similarity=0.207 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcC----CCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKEC----PHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~----~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
.++||.|+.||.+|+..||..|+.+ +||+..+|++||.++||+++||++||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 4567888999999999999999999 9999999999999999999999999999999999743
No 33
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.57 E-value=4.4e-16 Score=141.33 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~ 196 (872)
...+|+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+||++.+.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 34567789999999999999999999999999999999999999999999999999999865443
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.57 E-value=3.3e-16 Score=139.79 Aligned_cols=62 Identities=34% Similarity=0.476 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
++.||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||++
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 35677889999999999999999999999999999999999999999999999999999753
No 35
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.57 E-value=4.3e-16 Score=134.35 Aligned_cols=64 Identities=30% Similarity=0.508 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
.+++++.|++||.+|+..||..|+.++||+..++.+||..+||+++||++||||||+|+||++.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 3456778899999999999999999999999999999999999999999999999999997543
No 36
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.57 E-value=6e-16 Score=126.84 Aligned_cols=57 Identities=39% Similarity=0.493 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHH
Q 002869 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (872)
Q Consensus 134 kKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~K 190 (872)
++|.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467788999999999999999999999999999999999999999999999999986
No 37
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.56 E-value=9.7e-16 Score=131.87 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 135 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F~~-~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
.++|++||.+|+..||..|+. ++||+..+|++||.++||+++||++||||||+|+|+++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 456789999999999999996 99999999999999999999999999999999999865
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.56 E-value=1e-15 Score=132.14 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 135 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F~~-~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
+++|++||.+|+..||..|+. ++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999995 99999999999999999999999999999999999865
No 39
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5.1e-16 Score=134.94 Aligned_cols=60 Identities=25% Similarity=0.557 Sum_probs=55.5
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 136 R~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
++|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++.+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 345679999999999999999999999999999999999999999999999999986543
No 40
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.56 E-value=5e-16 Score=129.17 Aligned_cols=59 Identities=27% Similarity=0.418 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~K 190 (872)
.+++++|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45677889999999999999999999999999999999999999999999999999976
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.56 E-value=5.6e-16 Score=128.76 Aligned_cols=57 Identities=33% Similarity=0.512 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 137 ~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
.|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 468899999999999999999999999999999999999999999999999999865
No 42
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.55 E-value=4.8e-16 Score=131.87 Aligned_cols=60 Identities=30% Similarity=0.511 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
||+|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 677899999999999999999999999999999999999999999999999999997543
No 43
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.55 E-value=9.3e-16 Score=126.02 Aligned_cols=54 Identities=37% Similarity=0.493 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHH
Q 002869 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (872)
Q Consensus 139 trfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkq 192 (872)
+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999975
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=9.2e-16 Score=139.37 Aligned_cols=63 Identities=32% Similarity=0.416 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
.+.+++|+.||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|++..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 356778899999999999999999999999999999999999999999999999999998654
No 45
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=2e-15 Score=136.63 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhC---------------CccceEEeeccchhhHHHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------LETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~Lg---------------Ls~rQVKvWFQNRRaK~Kkqq~r 195 (872)
.+++||.|+.||++|+..||..|+.++||+..+|++||.+|+ |++.||++||||||+|+|+++..
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 346688899999999999999999999999999999999999 99999999999999999987654
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=1.8e-15 Score=130.37 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~---~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
++++++|++|+.+|+..||..|.. ++||+..+|++||.++||+++||++||||||+|+|+...
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 456778889999999999999987 999999999999999999999999999999999997543
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.53 E-value=1.5e-15 Score=131.10 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=57.4
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 134 kKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
.++.|+.||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+||++.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 4677889999999999999999999999999999999999999999999999999997654
No 48
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=1.9e-15 Score=132.59 Aligned_cols=59 Identities=22% Similarity=0.369 Sum_probs=54.4
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 137 ~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
+|.+||.+|+.+||+.|..++||+..+|++||+++||+++||++||||||+|+|+.+.+
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 34469999999999999999999999999999999999999999999999999976543
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-15 Score=132.93 Aligned_cols=60 Identities=23% Similarity=0.382 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
++.|++||.+|+..||..|+.++||+..+|++||+++||+++||++||||||+|+||++.
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 345788999999999999999999999999999999999999999999999999997543
No 50
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.51 E-value=1.4e-15 Score=149.85 Aligned_cols=62 Identities=24% Similarity=0.390 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkq 192 (872)
.+++||+|+.||.+|+..||..|+.++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34678889999999999999999999999999999999999999999999999999999974
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.51 E-value=3.2e-15 Score=128.85 Aligned_cols=62 Identities=26% Similarity=0.494 Sum_probs=57.7
Q ss_pred CCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHH
Q 002869 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F---~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~ 196 (872)
||+|++||.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|++..+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 6778899999999999999 9999999999999999999999999999999999999865543
No 52
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=2.1e-15 Score=135.97 Aligned_cols=56 Identities=18% Similarity=0.346 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 139 trfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
++||.+|+.+||+.|+.++||+..+|++||.+|||+++||++||||||+|||++.+
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999997543
No 53
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.51 E-value=4.7e-15 Score=131.44 Aligned_cols=65 Identities=22% Similarity=0.341 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~---~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
..++||+|++|+.+|+..||..|.+ ++||+..+|++||.++||+++||++||||||+|+|+...+
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 3456788899999999999999988 5999999999999999999999999999999999976544
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.50 E-value=4.9e-15 Score=131.57 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=56.7
Q ss_pred CCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F---~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
||+|++|+.+|+..||..| ..++||+..+|++||+++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6778899999999999999 899999999999999999999999999999999999986544
No 55
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.50 E-value=2.1e-15 Score=149.58 Aligned_cols=65 Identities=29% Similarity=0.452 Sum_probs=52.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
..++||+|++||..|+..||+.|+.++||+..+|.+||+++||+++||++||||||+|+||+...
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 45678889999999999999999999999999999999999999999999999999999986543
No 56
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.49 E-value=2.5e-15 Score=146.30 Aligned_cols=62 Identities=29% Similarity=0.479 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkq 192 (872)
.+++||+|++||.+|+..||..|+.++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45667889999999999999999999999999999999999999999999999999999974
No 57
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=6.4e-15 Score=132.24 Aligned_cols=58 Identities=22% Similarity=0.407 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHH
Q 002869 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (872)
Q Consensus 137 ~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~ 194 (872)
++.+||.+|+..||..|+.++||+..+|++||+++||+++||++||||||+|+|++.+
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 3345999999999999999999999999999999999999999999999999986543
No 58
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.48 E-value=2.6e-15 Score=130.00 Aligned_cols=58 Identities=33% Similarity=0.460 Sum_probs=53.6
Q ss_pred CCCCCCCCHHHHHHHHHhh-hcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHH
Q 002869 135 KKRYHRHTPQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F-~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkq 192 (872)
.+++.+++.+|+..||..| +.++||+..+|++||+++||+++||++||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 4455678999999999999 999999999999999999999999999999999999953
No 59
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.48 E-value=3.9e-15 Score=125.08 Aligned_cols=58 Identities=28% Similarity=0.421 Sum_probs=55.2
Q ss_pred CCCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHH
Q 002869 134 RKKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (872)
Q Consensus 134 kKR~RtrfT~eQl~~LE~~F---~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kk 191 (872)
.+++|++|+.+|+..||..| ..++||+..++.+||.++||+++||++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46778899999999999999 89999999999999999999999999999999999985
No 60
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.48 E-value=6.7e-15 Score=122.14 Aligned_cols=55 Identities=40% Similarity=0.507 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHH
Q 002869 137 RYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (872)
Q Consensus 137 ~RtrfT~eQl~~LE~~F~~---~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kk 191 (872)
+|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3678999999999999999 999999999999999999999999999999999986
No 61
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-14 Score=132.97 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHh---------------------CCccceEEeeccchhhHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRL---------------------CLETRQVKFWFQNRRTQM 189 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~L---------------------gLs~rQVKvWFQNRRaK~ 189 (872)
.+++||.|+.|++.|+..||+.|+.++||+..+|++||.+| .+++.+|++||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678889999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHH
Q 002869 190 KTQLER 195 (872)
Q Consensus 190 Kkqq~r 195 (872)
|++++.
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 986554
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.46 E-value=6.4e-15 Score=130.37 Aligned_cols=59 Identities=36% Similarity=0.419 Sum_probs=54.1
Q ss_pred CCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 135 KKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F~~---~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
+++|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 455677999999999999999 99999999999999999999999999999999999754
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.46 E-value=1.3e-14 Score=129.21 Aligned_cols=58 Identities=36% Similarity=0.467 Sum_probs=55.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCccceEEeeccchhhHHH
Q 002869 133 PRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (872)
Q Consensus 133 kkKR~RtrfT~eQl~~LE~~F~~---~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~K 190 (872)
+++|+|++|+.+|+..||..|.. ++||+..+|++||.++||+++||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 45667889999999999999999 99999999999999999999999999999999987
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.46 E-value=1.5e-14 Score=141.09 Aligned_cols=61 Identities=33% Similarity=0.633 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kk 191 (872)
.+++||+|++||.+|+..||..|+.++||+..+|.+||+++||+++||++||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3467788999999999999999999999999999999999999999999999999999986
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.45 E-value=4.4e-15 Score=127.87 Aligned_cols=56 Identities=36% Similarity=0.463 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHH
Q 002869 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (872)
Q Consensus 140 rfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r 195 (872)
.+|..|+..||+.|+.++||+..+|.+||+++||+++||++||||||+|+||++..
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 57999999999999999999999999999999999999999999999999976543
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.45 E-value=2.4e-14 Score=122.67 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHHhCCccceEEeeccchhhHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~-~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~K 190 (872)
++++||.|+.|+.+|+..|+..|+. ++||+...|++||.++||++++|++||||||--.|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3467888999999999999999999 99999999999999999999999999999997543
No 67
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.43 E-value=1.1e-14 Score=133.66 Aligned_cols=65 Identities=20% Similarity=0.322 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHH------------------hC---CccceEEeeccchhhHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKR------------------LC---LETRQVKFWFQNRRTQM 189 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~------------------Lg---Ls~rQVKvWFQNRRaK~ 189 (872)
.+++||.|+.||++|+..||..|+.++||+..+|++||.+ || |++.||++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3456778899999999999999999999999999999999 88 99999999999999999
Q ss_pred HHHHHH
Q 002869 190 KTQLER 195 (872)
Q Consensus 190 Kkqq~r 195 (872)
|+++..
T Consensus 86 k~k~~~ 91 (99)
T 1lfb_A 86 AFRHKL 91 (99)
T ss_dssp SCCC--
T ss_pred HHhchh
Confidence 865543
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.42 E-value=3.2e-14 Score=121.47 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 141 fT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
-|.+|+.+||+.|..++||+..+|.+||..+||+++||++||||||+|+|+-+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999643
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=1.6e-14 Score=122.89 Aligned_cols=49 Identities=41% Similarity=0.596 Sum_probs=46.2
Q ss_pred HHHHHHHHHhh-hcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHH
Q 002869 143 PQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (872)
Q Consensus 143 ~eQl~~LE~~F-~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kk 191 (872)
+.|+.+||+.| ..++||+..+|.+||++|||+++|||+||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 56899999999 67899999999999999999999999999999999985
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.41 E-value=4.3e-14 Score=138.78 Aligned_cols=61 Identities=30% Similarity=0.501 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkq 192 (872)
.++||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3567788999999999999999999999999999999999999999999999999999963
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=4.1e-14 Score=119.92 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHH
Q 002869 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (872)
Q Consensus 140 rfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kk 191 (872)
..+.+|+..||+.|..++||+..+|.+||+++||+++||++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4568999999999999999999999999999999999999999999999875
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.38 E-value=5.7e-14 Score=138.51 Aligned_cols=63 Identities=27% Similarity=0.353 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHH
Q 002869 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (872)
Q Consensus 131 ~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq 193 (872)
.+++||+|+.||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 446688899999999999999999999999999999999999999999999999999999644
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.31 E-value=2.4e-13 Score=115.95 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHhhh---cCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHHh
Q 002869 140 RHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (872)
Q Consensus 140 rfT~eQl~~LE~~F~---~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~e 197 (872)
+|+.+|+..||..|. .++||+..+|++||.++||+++||++||||||+|+|+...+++
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 699999999999999 9999999999999999999999999999999999998665543
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.21 E-value=9.2e-13 Score=134.01 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhC---------------------CccceEEeeccchhhH
Q 002869 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQ 188 (872)
Q Consensus 130 ~~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~Lg---------------------Ls~rQVKvWFQNRRaK 188 (872)
..+++||.|+.|++.|+..||+.|+.++||+..+|++||..++ |++.||++||||||+|
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3456678889999999999999999999999999999999999 9999999999999999
Q ss_pred HHH
Q 002869 189 MKT 191 (872)
Q Consensus 189 ~Kk 191 (872)
+|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 875
No 75
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.14 E-value=6.2e-10 Score=113.30 Aligned_cols=194 Identities=14% Similarity=0.201 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceeecc-C-CCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHHHHh
Q 002869 339 MFLELALAAMDELVKMAQTDEPLWIRSF-E-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (872)
Q Consensus 339 ~~~~lA~~Am~El~~la~~~eplWi~~~-~-~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LVe~l 416 (872)
-..++|++||+|++++.+ ++.-|.... + .| .. =|.|.++.. | -.=|..++|...+..+.+.|
T Consensus 11 ~y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~g-v~-----vy~~~~~~~------g---~~~k~~~~v~~~~~~v~~~l 74 (221)
T 3p0l_A 11 AYLQQGEEAMQKALGILS-NQEGWKKESQQDNG-DK-----VMSKVVPDV------G---KVFRLEVVVDQPMERLYEEL 74 (221)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTCEEEEECTTS-CE-----EEEEECSSS------C---EEEEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCCeEeeecCCC-cE-----EEEEEcCCC------c---eEEEEEEEEcCCHHHHHHHH
Confidence 357999999999999976 345797762 3 33 11 233333211 2 34488899999999999998
Q ss_pred -cC---hhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceee
Q 002869 417 -MD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHA 492 (872)
Q Consensus 417 -mD---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~a 492 (872)
+| +.+|-..+ ..++.++.++. .+ .+ .|.
T Consensus 75 ~~d~~~r~~Wd~~~----~~~~vle~~~~-------~t-~I------------------------------------~y~ 106 (221)
T 3p0l_A 75 VERMEAMGEWNPNV----KEIKVLQKIGK-------DT-FI------------------------------------THE 106 (221)
T ss_dssp TTTGGGTTTSCTTC----SEEEEEEECSS-------SE-EE------------------------------------EEE
T ss_pred HhccchhhhcCcch----heEEEEEecCC-------Ce-EE------------------------------------EEE
Confidence 46 46677765 34455555532 12 34 443
Q ss_pred eEe-eccccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeee
Q 002869 493 ELQ-VLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEY 569 (872)
Q Consensus 493 el~-~~SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~ 569 (872)
... .+.++++.|||.++|+.++. +|.++|+-.|++.-. -|..+.++|...+++|++|+++++| .|+|||+-|++.
T Consensus 107 ~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~~~-~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp 184 (221)
T 3p0l_A 107 LAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATDFGN-MPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDL 184 (221)
T ss_dssp EECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECCCTT-SCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEEC
T ss_pred eeccccCCccCCceEEEEEEEEEc-CCeEEEEEEeccCCC-CCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecC
Confidence 221 23468999999999999985 688999999987321 1222468999999999999999988 999999999988
Q ss_pred ccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 002869 570 DESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 602 (872)
Q Consensus 570 d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce 602 (872)
.-+ +| +.+++..+.-+.-.++..|+++|+
T Consensus 185 ~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 185 KGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 766 44 456777777777789999988887
No 76
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.11 E-value=1.8e-09 Score=110.22 Aligned_cols=197 Identities=11% Similarity=0.162 Sum_probs=140.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeeccC--CCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHH-
Q 002869 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV- 413 (872)
Q Consensus 337 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~--~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LV- 413 (872)
....++.+++|++++.++... .--|-...+ .+ ..| |.+..+. .|. .-|..++|...+..+.
T Consensus 20 ~~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g-~~v-----y~~~~~~------~g~---~~k~~~~v~~~~~~v~~ 83 (229)
T 1em2_A 20 EREYIRQGKEATAVVDQILAQ-EENWKFEKNNEYG-DTV-----YTIEVPF------HGK---TFILKTFLPCPAELVYQ 83 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTC-CEE-----EEEEETT------TEE---EEEEEEEESSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCC-CEE-----EEEecCC------CCc---eEEEEEEecCCHHHHHH
Confidence 356789999999999999863 347976532 22 111 3333221 121 3388899999999998
Q ss_pred HHhcChh---hhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccce
Q 002869 414 ETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEM 490 (872)
Q Consensus 414 e~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M 490 (872)
+.|+|.+ +|-..| ..++.++.+..+ + .+
T Consensus 84 ~~~~d~~~r~~Wd~~~----~~~~vle~~~~~-------t-~I------------------------------------- 114 (229)
T 1em2_A 84 EVILQPERMVLWNKTV----TACQILQRVEDN-------T-LI------------------------------------- 114 (229)
T ss_dssp HTTTCHHHHTTTCTTE----EEEEEEEEETTT-------E-EE-------------------------------------
T ss_pred HHHhCccchhhccccc----ceEEEEEecCCC-------e-EE-------------------------------------
Confidence 6776654 565554 445666666422 2 23
Q ss_pred eeeEeec--cccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEe
Q 002869 491 HAELQVL--SPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEH 566 (872)
Q Consensus 491 ~ael~~~--SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH 566 (872)
|-++..+ .++++.|||.++|+++.. ++.|+|+-.|++.-. .|....++|+..+++|++|++++ +|.|+|||+-|
T Consensus 115 ~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~ 192 (229)
T 1em2_A 115 SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIATSHSA-KPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILN 192 (229)
T ss_dssp EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEECCCTT-SCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEEC
T ss_pred EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecccCCC-CCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEE
Confidence 2235544 578999999999999987 566999999997532 22234689999999999999988 67899999999
Q ss_pred eeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 002869 567 AEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 604 (872)
Q Consensus 567 ~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce~l 604 (872)
++..-+ +| +.+++..+.-+.-.++..|+.+|+.+
T Consensus 193 ~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 193 TDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp EECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 987765 55 67788888888888999998888764
No 77
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.09 E-value=7.4e-10 Score=115.00 Aligned_cols=175 Identities=15% Similarity=0.194 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHH-HHhcChhhh
Q 002869 344 ALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ETLMDPNRW 422 (872)
Q Consensus 344 A~~Am~El~~la~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LV-e~lmD~~~W 422 (872)
++.++.|+++.+.....-|-...+... .+.|.+.. +.|...-.-|..++|...+.+++ ++|.|+.+|
T Consensus 34 l~~~~~~ll~~~~~~~~gW~~~~~~~g---------i~V~~k~~---~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~W 101 (237)
T 2pso_A 34 LNHLIQGLQKEAKEKFKGWVTCSSTDN---------TDLAFKKV---GDGNPLKLWKASVEVEAPPSVVLNRVLRERHLW 101 (237)
T ss_dssp CCCHHHHHHHHHHHHCCSCEEECCSSS---------CEEEEECC---CSSCCCCEEEEEEEESSCHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHhhcCCCCCEEEecCCC---------eEEEEEEc---CCCCCcEEEEEEEEEcCChHHHHHHHHhhhhhH
Confidence 346777887776544556976543321 12221111 12333345577778877777764 789999999
Q ss_pred hhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEeecccccc
Q 002869 423 AEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQVLSPLVP 502 (872)
Q Consensus 423 ~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~~~SpLvp 502 (872)
-..+ ..++.++.|+. .-.+ +|..+..+.| ++
T Consensus 102 d~~~----~~~~vle~id~--------~~~I------------------------------------~y~~~~~p~p-~~ 132 (237)
T 2pso_A 102 DEDF----VQWKVVETLDR--------QTEI------------------------------------YQYVLNSMAP-HP 132 (237)
T ss_dssp CTTB----CCCEEEEEEET--------TEEE------------------------------------EEEEECCSSS-CC
T ss_pred Hhhh----ceEEEEEEcCC--------CcEE------------------------------------EEEEecCCCC-cC
Confidence 8886 44577777752 2245 6666666665 79
Q ss_pred ceeeEEEeeece-ecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhh
Q 002869 503 VREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPL 581 (872)
Q Consensus 503 ~Re~~flRyckq-~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl 581 (872)
.|||.++|+.++ +++|.++||-.|++.-. .|.. .++|+..+++|++|+++.+|.|+|||+-|++.. ..+|.-+..+
T Consensus 133 ~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~-~P~~-g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~ 209 (237)
T 2pso_A 133 SRDFVVLRTWKTDLPKGMCTLVSLSVEHEE-AQLL-GGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GHSPEWYSKG 209 (237)
T ss_dssp CEEEEEEEEEESCCGGGCEEEEEEECCCTT-CCCC-SSEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SSCTTTTTTH
T ss_pred CeEEEEEEEEEEECCCCEEEEEEEcccCCC-CCCC-CcEEEEEeccEEEEEECCCCCEEEEEEEEeCCC-CCchHHHHHH
Confidence 999999999985 68999999999998532 2323 689999999999999999999999999999987 4577665333
Q ss_pred h
Q 002869 582 I 582 (872)
Q Consensus 582 ~ 582 (872)
+
T Consensus 210 ~ 210 (237)
T 2pso_A 210 F 210 (237)
T ss_dssp H
T ss_pred H
Confidence 3
No 78
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.08 E-value=3.1e-11 Score=108.75 Aligned_cols=59 Identities=29% Similarity=0.419 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHHHHHHh
Q 002869 139 HRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (872)
Q Consensus 139 trfT~eQl~~LE~~F~~---~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkqq~r~e 197 (872)
+-|+.++...|+..|.+ ++||+..+|++||+++||+++||++||||||.|+|+...+.+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 46899999999999987 999999999999999999999999999999999998765543
No 79
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.04 E-value=3.7e-11 Score=124.12 Aligned_cols=61 Identities=21% Similarity=0.351 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhC---------------------CccceEEeeccchhhH
Q 002869 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQ 188 (872)
Q Consensus 130 ~~~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~Lg---------------------Ls~rQVKvWFQNRRaK 188 (872)
..+++||.|+.|++.|+..||+.|+.++||+..+|++||+.++ |++.||++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 4456678888899999999999999999999999999999988 8999999999999987
Q ss_pred HH
Q 002869 189 MK 190 (872)
Q Consensus 189 ~K 190 (872)
..
T Consensus 218 ~~ 219 (221)
T 2h8r_A 218 EA 219 (221)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 80
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.1e-10 Score=100.72 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhH
Q 002869 143 PQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (872)
Q Consensus 143 ~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK 188 (872)
.+|+..||..|..+++|+..++.+||..+||+.++||+||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 81
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.95 E-value=8.9e-11 Score=127.75 Aligned_cols=56 Identities=27% Similarity=0.426 Sum_probs=52.6
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHH
Q 002869 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~K 190 (872)
++.++.++.+|+..||+.|+.++||+..+|++||+++||+++|||+||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 44566799999999999999999999999999999999999999999999999976
No 82
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.87 E-value=2.7e-08 Score=99.83 Aligned_cols=152 Identities=16% Similarity=0.229 Sum_probs=117.5
Q ss_pred eeeccceeEE-echhHHHHHhcC---hhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHH
Q 002869 397 EASRETGMVI-INSLALVETLMD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLI 472 (872)
Q Consensus 397 EASR~~g~V~-~~~~~LVe~lmD---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~ 472 (872)
-.-|..++|- ..+..+.+.|+| ..+|...+ ...+||.. +|. .+
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~-------~~~~vle~------~~~-~i------------------- 98 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV-------KELYEQEC------NGE-TV------------------- 98 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTE-------EEEEEEEE------TTE-EE-------------------
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHH-------hhEEEecc------CCC-EE-------------------
Confidence 3568889995 999999999999 67777764 55566654 232 35
Q ss_pred HHHHHHHhhhhcccccceeeeEeeccccccceeeEEEeeeceec-Cc--eEEEEEEecCCccCCCCCCCccceeecCCcc
Q 002869 473 ILVYKKIKIKLFFSFLEMHAELQVLSPLVPVREVNFLRFCKQHA-EG--VWAVVDVSIDTIRETSGAPAFVNCRRLPSGC 549 (872)
Q Consensus 473 ~~~~~~~~~~~~~~~~~M~ael~~~SpLvp~Re~~flRyckq~~-~g--~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGc 549 (872)
+|.++..|.|+ ..|||.++|+++..+ +| .|+|+-.|++.-. .|..+.++|.+.+++|+
T Consensus 99 -----------------~~~~~~~p~p~-~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv~~p~-~P~~~~~VR~~~~~~~~ 159 (214)
T 1ln1_A 99 -----------------VYWEVKYPFPM-SNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQ-LGERSGVIRVKQYKQSL 159 (214)
T ss_dssp -----------------EEEEECCCTTS-CCEEEEEEEEEEEECSTTCCEEEEEEEECCBTT-BCCCTTSEEECCEEEEE
T ss_pred -----------------EEEEEEcCCCC-CCceEEEEEEEEecccCCCeEEEEEEecccCCC-CCCCCCcEEEEEEEEEE
Confidence 77888888886 999999999998875 66 5999999987432 23234689999999999
Q ss_pred eEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 002869 550 VVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 604 (872)
Q Consensus 550 lIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce~l 604 (872)
+|++..+|.|+||++-|++.. ..+|.- |++..+.-++..++..|+++|+..
T Consensus 160 ~i~p~~~~~t~v~~~~~~Dp~-G~iP~~---l~n~~~~~~~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 160 AIESDGKKGSKVFMYYFDNPG-GQIPSW---LINWAAKNGVPNFLKDMARACQNY 210 (214)
T ss_dssp EEEECSSSSEEEEEEEEECCS-SCCCHH---HHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred EEecCCCCceEEEEEEEECCC-CcccHH---HHHHHHHHHhHHHHHHHHHHHHhc
Confidence 999999999999999999987 445543 445555566778888898888743
No 83
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.84 E-value=2.6e-08 Score=101.73 Aligned_cols=192 Identities=11% Similarity=0.142 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEEechhHHHHHhcC
Q 002869 339 MFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD 418 (872)
Q Consensus 339 ~~~~lA~~Am~El~~la~~~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~~~~~~LVe~lmD 418 (872)
-+.+.+.++|.++..+. +.-|-...+... .+.|.+. ..+...-.-|..++|...+..|.+.|+|
T Consensus 25 ~~~~~~~e~l~~~~~~~---~~~W~~~~~~~g---------v~vy~~~----~~~~~~~~~k~~~~v~~~~~~v~~~l~d 88 (224)
T 1jss_A 25 SISTKLQNTLIQYHSIE---EDEWRVAKKAKD---------VTVWRKP----SEEFNGYLYKAQGVMDDVVNNVIDHIRP 88 (224)
T ss_dssp THHHHHHHHHHHHTTSC---GGGCEEEEEETT---------EEEEEEE----CSSSSSEEEEEEEEESSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhhC---CCCCEEEEECCC---------EEEEEEe----ccCCCceEEEEEEEEeCCHHHHHHHHhC
Confidence 35666666666655543 556965432210 2222220 0111223448888999999999999999
Q ss_pred hh---hhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceeeeEe
Q 002869 419 PN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHAELQ 495 (872)
Q Consensus 419 ~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~ael~ 495 (872)
.. +|-..| ..++.++.|. +.-.+ .|.-+.
T Consensus 89 ~~~r~~Wd~~~----~~~~vle~id--------~~~~I------------------------------------~y~~~~ 120 (224)
T 1jss_A 89 GPWRLDWDRLM----TSLDVLEHFE--------ENCCV------------------------------------MRYTTA 120 (224)
T ss_dssp STTHHHHCSSE----EEEEEEEECS--------TTEEE------------------------------------EEEEEC
T ss_pred cccccccccce----eeEEEEEEcC--------CCeEE------------------------------------EEEEcc
Confidence 65 887775 3344444442 12234 444444
Q ss_pred e-ccccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccc
Q 002869 496 V-LSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDES 572 (872)
Q Consensus 496 ~-~SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~ 572 (872)
- +-|+|..|||.++|+.++.++| ++|+-+|++.-.. .+.++|...+++|++|+++++| .|+|||+-|++.--+
T Consensus 121 ~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp~~---~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~ 196 (224)
T 1jss_A 121 GQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEWSET---RPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM 196 (224)
T ss_dssp CBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCCCCC---CTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC
T ss_pred cccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecCCC---CCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC
Confidence 3 3457999999999999998777 7889999884322 2368999999999999999875 899999999987754
Q ss_pred cccccchhhhccchhHHHHHHHHHHHHHHH
Q 002869 573 QVHQLYKPLIISGMGFGAQRWVATLQRQCE 602 (872)
Q Consensus 573 ~v~~l~rpl~~Sg~afGA~rw~atLqR~ce 602 (872)
+| +.+++..+.-+...++..|+.+|+
T Consensus 197 -iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 197 -IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp -CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 44 466777777778888999988765
No 84
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.54 E-value=3.2e-07 Score=96.94 Aligned_cols=127 Identities=11% Similarity=0.088 Sum_probs=93.6
Q ss_pred ccceeEEechhHHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHH
Q 002869 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKI 479 (872)
Q Consensus 400 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (872)
|..++|-..+..|.+.|+|.+.+.+=-+.+ ..++.++-|+. . .+
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~-~~~~vle~id~--------~-~i-------------------------- 134 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKHY-RSVELVQQVDE--------D-DA-------------------------- 134 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTTC-CEEEEEEEEET--------T-EE--------------------------
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhhc-cEEEEEEEcCC--------C-eE--------------------------
Confidence 788889999999999999986443333332 33455554542 1 34
Q ss_pred hhhhcccccceeeeEeeccc--cccceeeEEEeeecee-cCce-EEEEEEecCCccCCCCCCCccceeecCCcceEeecC
Q 002869 480 KIKLFFSFLEMHAELQVLSP--LVPVREVNFLRFCKQH-AEGV-WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP 555 (872)
Q Consensus 480 ~~~~~~~~~~M~ael~~~Sp--Lvp~Re~~flRyckq~-~~g~-w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~ 555 (872)
+| ++..++| +++.|||..||+.+.. .+|. ++|+-+|++.-. -|..+.++|...+|+|++|++++
T Consensus 135 ----------vY-~~~~p~~~~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp~-~Pp~~g~VR~~~~~sg~~I~P~~ 202 (258)
T 3fo5_A 135 ----------IY-HVTSPALGGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPT-HRETPEYRRGETLCSGFCLWREG 202 (258)
T ss_dssp ----------EE-EEEECCCTTCSSCEEEEEEEEEECCSSTTCCEEEEEEEEECTT-SCCCTTSEECCCSSEEEEEEEEE
T ss_pred ----------EE-EEecCCccCCCCCCEEEEEEEEEeccCCCCEEEEEEEeccCCC-CCCCCCCEEEEEcCcEEEEEECC
Confidence 56 5667775 7999999999999874 4774 999999987422 22224689999999999999999
Q ss_pred CCccEEEEEEeeeeccccccc
Q 002869 556 NGYSKVTWVEHAEYDESQVHQ 576 (872)
Q Consensus 556 nG~skVtwVeH~e~d~~~v~~ 576 (872)
+|.|+||++-|++- ..++-
T Consensus 203 ~~~t~VtY~~q~dp--G~lP~ 221 (258)
T 3fo5_A 203 DQLTKVSYYNQATP--GVLNY 221 (258)
T ss_dssp TTEEEEEEEESCCG--GGHHH
T ss_pred CCCEEEEEEEeeCC--CCCCc
Confidence 99999999988873 44443
No 85
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.35 E-value=6.8e-06 Score=81.01 Aligned_cols=152 Identities=14% Similarity=0.047 Sum_probs=108.3
Q ss_pred eeccceeEEechhHHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHH
Q 002869 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYK 477 (872)
Q Consensus 398 ASR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~ 477 (872)
.=|..++|...+.++.+.|+|.+...+--|.+ ...+||.. . ++ -.+
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~----~~~~vle~-~----~~-~~i------------------------ 73 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMPDV----AASELLKA-T----DT-EQY------------------------ 73 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTTE----EEEEEEEE-C----SS-EEE------------------------
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHHhc----CEEEEEee-c----CC-ceE------------------------
Confidence 46778899999999999999977655555442 55666765 2 12 234
Q ss_pred HHhhhhcccccceeeeEeeccccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCC
Q 002869 478 KIKIKLFFSFLEMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNG 557 (872)
Q Consensus 478 ~~~~~~~~~~~~M~ael~~~SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG 557 (872)
+|.++..+-| +..|||.++|+.+...+|...|+=.+ + ....|..+.++|.+.+++|++|++ .+|
T Consensus 74 ------------~y~~~~~p~p-~~~RD~v~~~~~~~~~~g~~~i~~~~-~-~~~~P~~~~~VR~~~~~~~~~i~p-~~~ 137 (189)
T 3qsz_A 74 ------------HYLDNSAPWP-VSNRDGVYHFTYEKAGDGAITVRVEA-V-PDYLPLRKGKVRIPRAKGQWTLVP-DAD 137 (189)
T ss_dssp ------------EEEEECCSSS-CCCEEEEEEEEEEECTTSCEEEEEEE-C-TTSSCCCTTSEECCCEEEEEEEEE-CSS
T ss_pred ------------EEEEeecCCC-cCCcceEEEEEEEECCCCeEEEEEEc-C-CCccCCCCCeEEeeEeeEEEEEEE-CCC
Confidence 5666666655 78999999999998878866554333 2 111122245899999999999999 999
Q ss_pred ccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 002869 558 YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 603 (872)
Q Consensus 558 ~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce~ 603 (872)
.|+||++-|++..-+ +|. -|++..+.-++-..+..|+++|+.
T Consensus 138 ~t~vt~~~~~dp~G~-iP~---~lvn~~~~~~~~~~l~~L~k~~~~ 179 (189)
T 3qsz_A 138 GVDVTYQMHASPGGS-IPS---WLANQTVVETPFGTLKALRSHLRQ 179 (189)
T ss_dssp SEEEEEEEEECSCSS-SCH---HHHHHTTTHHHHHHHHHHHHHHTC
T ss_pred eEEEEEEEEeCCCCC-CCH---HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999987633 433 345555555666788888888763
No 86
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.28 E-value=3.8e-08 Score=75.22 Aligned_cols=21 Identities=48% Similarity=0.874 Sum_probs=18.4
Q ss_pred ceEEeeccchhhHHHHHHHHH
Q 002869 176 RQVKFWFQNRRTQMKTQLERH 196 (872)
Q Consensus 176 rQVKvWFQNRRaK~Kkqq~r~ 196 (872)
+||+|||||||+||||++...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 699999999999999877654
No 87
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.16 E-value=2e-05 Score=81.71 Aligned_cols=200 Identities=12% Similarity=0.208 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHhhcC---CCCceeeccCCCcccccCHHHHhhhcCCCCCCCCCCCceeeeccceeEE-echhHHHHH
Q 002869 340 FLELALAAMDELVKMAQT---DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVET 415 (872)
Q Consensus 340 ~~~lA~~Am~El~~la~~---~eplWi~~~~~~~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~~g~V~-~~~~~LVe~ 415 (872)
+.+++...+.|.++.|.. ++.-|-...+... .+.|.+.. ...|...-.=|..+.|. ..+..+.+.
T Consensus 24 ~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~~~g---------v~vy~~~~--~~~g~~~~~~K~~~~~~~~~~~~v~~~ 92 (255)
T 2e3n_A 24 FVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEGE---------MKVYRREV--EENGIVLDPLKATHAVKGVTGHEVCNY 92 (255)
T ss_dssp THHHHHHHHHHHHHHTTSCCTTCTTEEEEEEETT---------EEEEEECC--EETTEECCCEEEEEEEETCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeCCC---------EEEEEEEc--CCCCceeeeEEEEEEEcCCCHHHHHHH
Confidence 445555555665555543 3356976543221 23332211 01122211235556555 778999999
Q ss_pred hcC---hhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHhhhhcccccceee
Q 002869 416 LMD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIKIKLFFSFLEMHA 492 (872)
Q Consensus 416 lmD---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~a 492 (872)
|+| +.+|-..+ ..++.++.|..+ + .+ .|.
T Consensus 93 l~d~~~r~~Wd~~~----~~~~vle~i~~~-------~-~i------------------------------------~y~ 124 (255)
T 2e3n_A 93 FWNVDVRNDWETTI----ENFHVVETLADN-------A-II------------------------------------IYQ 124 (255)
T ss_dssp HHCGGGHHHHCCSE----EEEEEEEEEETT-------E-EE------------------------------------EEE
T ss_pred HhCcchHhhhhhhc----ceeEEEEEcCCC-------C-EE------------------------------------EEE
Confidence 999 45676664 445655555421 1 55 777
Q ss_pred eEeeccccccceeeEEEeeeceec----C--ceEEEEEEecCCccCCCCCCCccceee---cCCcceEeecCC-------
Q 002869 493 ELQVLSPLVPVREVNFLRFCKQHA----E--GVWAVVDVSIDTIRETSGAPAFVNCRR---LPSGCVVQDMPN------- 556 (872)
Q Consensus 493 el~~~SpLvp~Re~~flRyckq~~----~--g~w~VvDvS~d~~~~~~~~~~~~~~~r---~PSGclIq~~~n------- 556 (872)
.+..|.|+ ..|||.++|++++.. + +.|+|+..|++.-. .|....++|... +.+|++|++..+
T Consensus 125 ~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~-~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~ 202 (255)
T 2e3n_A 125 THKRVWPA-SQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDS-APLNNRCVRAKINVAMICQTLVSPPEGNQEISRD 202 (255)
T ss_dssp EECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTT-SCCCSSSEECEEEEEEEEEEEEC---CCCCCCGG
T ss_pred EeecCCCc-CCceeEEEEEEEeccccccCCCCEEEEEEeccCCCC-CCCCCCCEEEEEEeeeeeeeEeccCCCCcccccC
Confidence 88888885 889999999998873 3 59999999998532 222235789884 678999998733
Q ss_pred -CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 002869 557 -GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 604 (872)
Q Consensus 557 -G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce~l 604 (872)
+.|+|||+-|++.-- .+|.- +++.....+.-..+..|+++|+..
T Consensus 203 ~~~t~vt~~~~~Dp~G-~iP~~---lvn~~~~~~~~~~l~~L~k~v~~~ 247 (255)
T 2e3n_A 203 NILCKITYVANVNPGG-WAPAS---VLRAVAKREYPKFLKRFTSYVQEK 247 (255)
T ss_dssp GEEEEEEEEEEEECSS-CCCHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEEeCCCC-ccCHH---HHHHHHhccccHHHHHHHHHHHHh
Confidence 579999999998764 34432 345555667777888888888754
No 88
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=97.37 E-value=0.0076 Score=61.24 Aligned_cols=199 Identities=14% Similarity=0.156 Sum_probs=117.3
Q ss_pred chhhhhHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhh
Q 002869 622 AGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL 701 (872)
Q Consensus 622 ~~Gr~s~lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fL 701 (872)
......++++|+..+..|-.-+.. ..+|.... ..++|+|.++...+.+ |.++ ++..-++++|+.||++|
T Consensus 18 ~~~~~~y~~~a~~~~~~~l~~~~~--~~~W~~~~---~~~gv~v~~~~~~~~~----~~~~--k~~~~v~~~~~~v~~~l 86 (231)
T 2r55_A 18 LYFQSMAAQMSEAVAEKMLQYRRD--TAGWKICR---EGNGVSVSWRPSVEFP----GNLY--RGEGIVYGTLEEVWDCV 86 (231)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHC--CSSCEEEE---CCSSEEEEEEECSSSS----SEEE--EEEEEESSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhcC--CCCCEEEE---eCCCEEEEEEccCCCC----CcEE--EEEEEECCCHHHHHHHH
Confidence 344456999999999888876533 47899873 3578999998763322 3444 44445599999999999
Q ss_pred --hccccchhhhhhcCCCCcceeeecccCCCCCceEEEEE-eccC----CCCCCceEEEEecccCCCCcEE-EEeecchh
Q 002869 702 --RDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR-ASAI----NANQSSMLILQETCTDAAGSLV-VYAPVDIP 773 (872)
Q Consensus 702 --rde~~R~eWd~ls~g~~~qe~~~ia~g~~~gn~vsllr-~~~~----~~~~~~~liLQesctd~sgs~v-VyAPvD~~ 773 (872)
.|...|.+||...- ..+.+..|. .... |.+ +... -....+..+|.-...+.-|+++ +.-.||-+
T Consensus 87 ~~~d~~~r~~Wd~~~~--~~~vle~i~----~~~~--i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~ 158 (231)
T 2r55_A 87 KPAVGGLRVKWDENVT--GFEIIQSIT----DTLC--VSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHP 158 (231)
T ss_dssp CC--CCSHHHHCTTCS--EEEEEEECS----SSEE--EEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCT
T ss_pred HhhCcchhhhhccccc--eeEEEEEcC----CCEE--EEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCC
Confidence 99999999997432 223333442 1222 333 2211 1234566666664455557775 57778865
Q ss_pred hhhhhhcCCCCCCc--cccCCccEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHH
Q 002869 774 AMHVVMNGGDSAYV--ALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVE 851 (872)
Q Consensus 774 ~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~~~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~ 851 (872)
.+- .-+.+| .++|+||.|-|.... .++|.+|.-+|+=.... +...-|.
T Consensus 159 ~~P-----~~~~~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G~----iP~~lvn 208 (231)
T 2r55_A 159 LCP-----PKPGFVRGFNHPCGCFCEPLPGE---------------------PTKTNLVTFFHTDLSGY----LPQNVVD 208 (231)
T ss_dssp TSC-----CCTTCEEEEECSEEEEEEECC-----------------------CCCEEEEEEECEECCSS----CCHHHHH
T ss_pred CCC-----CCCCCEEEEEEeeEEEEEEeCCC---------------------CCcEEEEEEEEeCCCCC----ccHHHHH
Confidence 532 113344 479999999995221 14688888777654432 2211222
Q ss_pred h-HhhhhHHHHHHHHHHhc
Q 002869 852 T-VNNLISCTVQKIKAALQ 869 (872)
Q Consensus 852 t-v~~li~~tvq~Ik~Al~ 869 (872)
. +..-+-.++++++.++.
T Consensus 209 ~~~~~~~~~~~~~Lr~~~~ 227 (231)
T 2r55_A 209 SFFPRSMTRFYANLQKAVK 227 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHhHHHHHHHHHHHHH
Confidence 2 22223347777777654
No 89
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=96.98 E-value=0.019 Score=56.33 Aligned_cols=171 Identities=14% Similarity=0.148 Sum_probs=98.8
Q ss_pred CCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccC
Q 002869 649 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKG 728 (872)
Q Consensus 649 ~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ls~g~~~qe~~~ia~g 728 (872)
++|.... ..++|+|.+++.. |.+ +..-+....++.||+.||++|.|-..|.+||-. +.+.--|.+
T Consensus 3 ~~W~~~~---~~~gv~v~~~~~~---~~~---~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~-----~~~~~vle~- 67 (189)
T 3qsz_A 3 DGWSLAK---DAEGIKVYVRNVE---GSP---LREFRGEVRLKAAADDVVKVLRDANAFRQWMPD-----VAASELLKA- 67 (189)
T ss_dssp CCCEEEE---EETTEEEEEECCT---TCS---SCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTT-----EEEEEEEEE-
T ss_pred CCCEEEE---cCCCEEEEEEeCC---CCC---eEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHh-----cCEEEEEee-
Confidence 5898773 3578999999863 221 234566777789999999999999999999964 344433444
Q ss_pred CCCCceEEEEEeccC-CCCCCceEEEEecccCCCCcEEEEeecchhhhhhhhcCCCCCC--ccccCCccEEccCCCCCCC
Q 002869 729 QDHGNCVSLLRASAI-NANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAY--VALLPSGFAIVPDGPDSRG 805 (872)
Q Consensus 729 ~~~gn~vsllr~~~~-~~~~~~~liLQesctd~sgs~vVyAPvD~~~m~~vm~G~d~~~--v~lLPSGF~I~Pdg~~~~~ 805 (872)
+.+..|.-...... .....+..++.....|..|.+++..-.+-+.+ ...+.+ +..+++||.|-| |.
T Consensus 68 -~~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g~~~i~~~~~~~~~-----P~~~~~VR~~~~~~~~~i~p-~~---- 136 (189)
T 3qsz_A 68 -TDTEQYHYLDNSAPWPVSNRDGVYHFTYEKAGDGAITVRVEAVPDYL-----PLRKGKVRIPRAKGQWTLVP-DA---- 136 (189)
T ss_dssp -CSSEEEEEEEECCSSSCCCEEEEEEEEEEECTTSCEEEEEEECTTSS-----CCCTTSEECCCEEEEEEEEE-CS----
T ss_pred -cCCceEEEEEeecCCCcCCcceEEEEEEEECCCCeEEEEEEcCCCcc-----CCCCCeEEeeEeeEEEEEEE-CC----
Confidence 33344433333322 12334555555533454566554433221110 011233 456788888888 32
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHHh--HhhhhHHHHHHHHHHhc
Q 002869 806 PLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAALQ 869 (872)
Q Consensus 806 ~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~t--v~~li~~tvq~Ik~Al~ 869 (872)
++|.+|.-.|+=.... .+..+.. +...+-.++++++.++.
T Consensus 137 -------------------~~t~vt~~~~~dp~G~-----iP~~lvn~~~~~~~~~~l~~L~k~~~ 178 (189)
T 3qsz_A 137 -------------------DGVDVTYQMHASPGGS-----IPSWLANQTVVETPFGTLKALRSHLR 178 (189)
T ss_dssp -------------------SSEEEEEEEEECSCSS-----SCHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred -------------------CeEEEEEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3588887777754432 2233322 33344457777777664
No 90
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=96.57 E-value=0.037 Score=56.20 Aligned_cols=175 Identities=18% Similarity=0.248 Sum_probs=102.4
Q ss_pred CCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhhhccccchhhhhhcCCCCcceeeeccc
Q 002869 648 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAK 727 (872)
Q Consensus 648 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ls~g~~~qe~~~ia~ 727 (872)
..+|... . ..++|+|.++...+. .|-+. +...-+++||+.||++|.|...|.+||..... ++.+-+|
T Consensus 42 ~~~W~~~-~--~~~gv~vy~~~~~~~----~~~~~--k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~~--~~vle~i-- 108 (224)
T 1jss_A 42 EDEWRVA-K--KAKDVTVWRKPSEEF----NGYLY--KAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTS--LDVLEHF-- 108 (224)
T ss_dssp GGGCEEE-E--EETTEEEEEEECSSS----SSEEE--EEEEEESSCHHHHHHHHSSSTTHHHHCSSEEE--EEEEEEC--
T ss_pred CCCCEEE-E--ECCCEEEEEEeccCC----CceEE--EEEEEEeCCHHHHHHHHhCcccccccccceee--EEEEEEc--
Confidence 5689876 2 247899999965332 23344 44455699999999999999999999964321 2333333
Q ss_pred CCCCCceEEEEEeccCC---CCCCceEEEEecccCCCCcEEEEeecchhhhhhhhcCCCCCCc--cccCCccEEccCCCC
Q 002869 728 GQDHGNCVSLLRASAIN---ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDGPD 802 (872)
Q Consensus 728 g~~~gn~vsllr~~~~~---~~~~~~liLQesctd~sgs~vVyAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~~ 802 (872)
+..+.|--......- ...++..++.....+..|.+++.-.||-+.+ .+.+| .++++||.|-|....
T Consensus 109 --d~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~~~Sv~hp~~-------~~g~VR~~~~~~g~~i~p~~~~ 179 (224)
T 1jss_A 109 --EENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSET-------RPEFVRGYNHPCGWFCVPLKDS 179 (224)
T ss_dssp --STTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEEECCCCCC-------CTTSEECEECSEEEEEEEETTE
T ss_pred --CCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeEEEEEeeeecCCC-------CCCCEEEEecccEEEEEEcCCC
Confidence 233344333332221 2456777766544445566666777876653 14454 479999999984221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHHhH-hhhhHHHHHHHHHHhc
Q 002869 803 SRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV-NNLISCTVQKIKAALQ 869 (872)
Q Consensus 803 ~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~tv-~~li~~tvq~Ik~Al~ 869 (872)
..+|.+|.-+|+=... .+...-|..+ -..+-.+++.++.++.
T Consensus 180 ---------------------~~~t~vt~~~~~Dp~G----~iP~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 180 ---------------------PSQSLLTGYIQTDLRG----MIPQSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp ---------------------EEEEEEEEEECEECCS----CCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------------------CCceEEEEEEEeCCCC----CccHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 1357888665554433 2332233321 2223347777776654
No 91
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=96.48 E-value=0.07 Score=53.90 Aligned_cols=193 Identities=14% Similarity=0.197 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHhh-hcc
Q 002869 626 RSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDE 704 (872)
Q Consensus 626 ~s~lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~fL-rde 704 (872)
..-.++++.-...+..-+. ...+|.... ...++|.|.+|+. +|. |.++ ++..-+++||+.||++| .|.
T Consensus 10 ~~y~~~~~~~~~~~l~~~~--~~~gW~~~~--~~~~gv~vy~~~~---~~~--g~~~--k~~~~v~~~~~~v~~~l~~d~ 78 (221)
T 3p0l_A 10 LAYLQQGEEAMQKALGILS--NQEGWKKES--QQDNGDKVMSKVV---PDV--GKVF--RLEVVVDQPMERLYEELVERM 78 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHH--SCTTCEEEE--ECTTSCEEEEEEC---SSS--CEEE--EEEEEESSCHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCCCeEee--ecCCCcEEEEEEc---CCC--ceEE--EEEEEEcCCHHHHHHHHHhcc
Confidence 3445566655555554443 356899772 1247788999984 332 4444 44445699999999999 588
Q ss_pred ccchhhhhhcCCCCcceeeecccCCCCCceEEEEEe--cc--C-CCCCCceEEEEecccCCCCcEEEE-eecchhhhhhh
Q 002869 705 RLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRA--SA--I-NANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVV 778 (872)
Q Consensus 705 ~~R~eWd~ls~g~~~qe~~~ia~g~~~gn~vsllr~--~~--~-~~~~~~~liLQesctd~sgs~vVy-APvD~~~m~~v 778 (872)
..|.+||...- ..+.+-+|. .+.. |++. .. . -....+..+|.-...+. +.+++. -.|+-+.+-
T Consensus 79 ~~r~~Wd~~~~--~~~vle~~~----~~t~--I~y~~~~~~~~~~v~~RDfv~~r~~~~~~-~~~vi~~~Sv~~~~~P-- 147 (221)
T 3p0l_A 79 EAMGEWNPNVK--EIKVLQKIG----KDTF--ITHELAAEAAGNLVGPRDFVSVRCAKRRG-STCVLAGMATDFGNMP-- 147 (221)
T ss_dssp GGTTTSCTTCS--EEEEEEECS----SSEE--EEEEEECC---CCSCCEEEEEEEEEEECS-SCEEECCEECCCTTSC--
T ss_pred chhhhcCcchh--eEEEEEecC----CCeE--EEEEeeccccCCccCCceEEEEEEEEEcC-CeEEEEEEeccCCCCC--
Confidence 89999996432 223344442 2222 3332 11 1 12345777766644443 555554 455544321
Q ss_pred hcCCCCCCc--cccCCccEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHHhH--h
Q 002869 779 MNGGDSAYV--ALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV--N 854 (872)
Q Consensus 779 m~G~d~~~v--~lLPSGF~I~Pdg~~~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~tv--~ 854 (872)
.-+.+| .++++||.|-|.+.. ..+|.+|.-+|+=.... +..--|..+ .
T Consensus 148 ---~~~g~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G~----iP~~lvn~~~~~ 199 (221)
T 3p0l_A 148 ---EQKGVIRAEHGPTCMVLHPLAGS---------------------PSKTKLTWLLSIDLKGW----LPKSIINQVLSQ 199 (221)
T ss_dssp ---CCTTSEECEECSCEEEEEEETTE---------------------EEEEEEEEEECEECCSS----CCHHHHHHHHHH
T ss_pred ---CCCCeEEEeccceEEEEEECCCC---------------------CCcEEEEEEEEecCCCC----CCHHHHHHHHHH
Confidence 113444 579999999985321 13688888877754433 332233332 3
Q ss_pred hhhHHHHHHHHHHhc
Q 002869 855 NLISCTVQKIKAALQ 869 (872)
Q Consensus 855 ~li~~tvq~Ik~Al~ 869 (872)
.++ .+++.++.++.
T Consensus 200 ~~~-~~~~~Lr~~~~ 213 (221)
T 3p0l_A 200 TQV-DFANHLRKRLE 213 (221)
T ss_dssp HHH-HHHHHHHHHTC
T ss_pred HHH-HHHHHHHHHHh
Confidence 333 48888888876
No 92
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=96.27 E-value=0.12 Score=52.32 Aligned_cols=196 Identities=9% Similarity=0.090 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHH-Hhhhcc
Q 002869 626 RSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLF-NFLRDE 704 (872)
Q Consensus 626 ~s~lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf-~fLrde 704 (872)
+.-++.++.....|-.-+. ...+|.... . ..++++|.++...+ .|.+. +...-+++||+.|| ++|.|.
T Consensus 21 ~~y~~~~~~a~~~~~~~l~--~~~~W~~~~-~-~~~g~~vy~~~~~~-----~g~~~--k~~~~v~~~~~~v~~~~~~d~ 89 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILA--QEENWKFEK-N-NEYGDTVYTIEVPF-----HGKTF--ILKTFLPCPAELVYQEVILQP 89 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TGGGCEEEE-E-CTTCCEEEEEEETT-----TEEEE--EEEEEESSCHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCEEEE-e-cCCCCEEEEEecCC-----CCceE--EEEEEecCCHHHHHHHHHhCc
Confidence 3434444444433333332 245898772 1 23578998887531 23444 34444599999999 999999
Q ss_pred ccchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccC---C-CCCCceEEEEecccCCCCcEEEEeecchhhhhhhhc
Q 002869 705 RLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI---N-ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMN 780 (872)
Q Consensus 705 ~~R~eWd~ls~g~~~qe~~~ia~g~~~gn~vsllr~~~~---~-~~~~~~liLQesctd~sgs~vVyAPvD~~~m~~vm~ 780 (872)
..|.+||...- .++.+.+| +.+..| +..+... . ....+.+++.-...+..+-+++...|+-+.+-
T Consensus 90 ~~r~~Wd~~~~--~~~vle~~----~~~t~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~vi~~~Sv~~~~~P---- 158 (229)
T 1em2_A 90 ERMVLWNKTVT--ACQILQRV----EDNTLI-SYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKP---- 158 (229)
T ss_dssp HHHTTTCTTEE--EEEEEEEE----TTTEEE-EEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEEEECCCTTSC----
T ss_pred cchhhcccccc--eEEEEEec----CCCeEE-EEEEecCcCCCCcCCCeeEEEEEEEEcCCEEEEEEecccCCCCC----
Confidence 99999997432 12333344 222333 2222221 1 23456666665444544455666677766532
Q ss_pred CCCCCC--ccccCCccEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHHh-Hhhhh
Q 002869 781 GGDSAY--VALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLI 857 (872)
Q Consensus 781 G~d~~~--v~lLPSGF~I~Pdg~~~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~t-v~~li 857 (872)
..+.+ +.++++||.|-|.... .++|.+|.-+|+=.... +..--+.. +...+
T Consensus 159 -~~~~~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G~----iP~~l~n~~~~~~~ 212 (229)
T 1em2_A 159 -PTHKYVRGENGPGGMIVLKSASN---------------------PRVCTFVWILNTDLKGR----LPRYLIHQSLAATM 212 (229)
T ss_dssp -CCTTSEECEECSEEEEEEECSSC---------------------TTCEEEEEEECEECCSS----SCHHHHHHHHHHHH
T ss_pred -CCCCCEeeeecccEEEEEecCCC---------------------CCcEEEEEEEEECCCCC----CCHHHHHHHHHHHH
Confidence 11233 4579999999994221 14688888777654432 22222222 23334
Q ss_pred HHHHHHHHHHhc
Q 002869 858 SCTVQKIKAALQ 869 (872)
Q Consensus 858 ~~tvq~Ik~Al~ 869 (872)
-.+++.++.++.
T Consensus 213 ~~~~~~Lr~~~~ 224 (229)
T 1em2_A 213 FEFAFHLRQRIS 224 (229)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457777777654
No 93
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=96.22 E-value=0.11 Score=51.63 Aligned_cols=172 Identities=16% Similarity=0.180 Sum_probs=99.3
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecc-cChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 002869 647 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 725 (872)
Q Consensus 647 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~lf~fLrde~~R~eWd~ls~g~~~qe~~~i 725 (872)
...+|.... ..++|+|.+++..+ . .+..-++..-++ +||+.||++|.|...|.+||... ++.--|
T Consensus 26 ~~~~W~~~~---~~~~v~v~~~~~~~---~---~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~-----~~~~vl 91 (214)
T 1ln1_A 26 AGADWQLLV---ETSGISIYRLLDKK---T---GLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV-----KELYEQ 91 (214)
T ss_dssp TTTTCEEEE---EETTEEEEEEEETT---T---TEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTE-----EEEEEE
T ss_pred CCCCcEEEE---ECCCeEEEEeccCC---C---CcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHH-----hhEEEe
Confidence 456899873 24689999987522 1 244667778898 99999999999999999999643 222222
Q ss_pred ccCCCCCceEEEEEeccCC-CCCCceEEEEeccc--CCCCc--E-EEEeecchhhhhhhhcCCCCCC--ccccCCccEEc
Q 002869 726 AKGQDHGNCVSLLRASAIN-ANQSSMLILQETCT--DAAGS--L-VVYAPVDIPAMHVVMNGGDSAY--VALLPSGFAIV 797 (872)
Q Consensus 726 a~g~~~gn~vsllr~~~~~-~~~~~~liLQesct--d~sgs--~-vVyAPvD~~~m~~vm~G~d~~~--v~lLPSGF~I~ 797 (872)
-. .|..|.-......- ....+..++.. +. |..|. + ++.-.|+-+.+- ..+.+ +..+++||.|-
T Consensus 92 e~---~~~~i~~~~~~~p~p~~~RD~v~~~~-~~~~~~~g~~~~~i~~~Sv~~p~~P-----~~~~~VR~~~~~~~~~i~ 162 (214)
T 1ln1_A 92 EC---NGETVVYWEVKYPFPMSNRDYVYLRQ-RRDLDMEGRKIHVILARSTSMPQLG-----ERSGVIRVKQYKQSLAIE 162 (214)
T ss_dssp EE---TTEEEEEEEECCCTTSCCEEEEEEEE-EEEECSTTCCEEEEEEEECCBTTBC-----CCTTSEEECCEEEEEEEE
T ss_pred cc---CCCEEEEEEEEcCCCCCCceEEEEEE-EEecccCCCeEEEEEEecccCCCCC-----CCCCcEEEEEEEEEEEEe
Confidence 11 12333333333211 22335555553 33 33442 3 445566655421 12445 45789999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhHHh--HhhhhHHHHHHHHHHhc
Q 002869 798 PDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAALQ 869 (872)
Q Consensus 798 Pdg~~~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv~t--v~~li~~tvq~Ik~Al~ 869 (872)
|.+. ++|.+|.-.|+=.... .+..+.. +...+-.++++++.++.
T Consensus 163 p~~~-----------------------~~t~v~~~~~~Dp~G~-----iP~~l~n~~~~~~~~~~l~~l~k~~~ 208 (214)
T 1ln1_A 163 SDGK-----------------------KGSKVFMYYFDNPGGQ-----IPSWLINWAAKNGVPNFLKDMARACQ 208 (214)
T ss_dssp ECSS-----------------------SSEEEEEEEEECCSSC-----CCHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCC-----------------------CceEEEEEEEECCCCc-----ccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8431 3688888777765432 2223221 33334446777776653
No 94
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=95.73 E-value=0.23 Score=51.25 Aligned_cols=175 Identities=19% Similarity=0.267 Sum_probs=101.2
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHH-HHhhhccccchhhhhhcCCCCcceeeec
Q 002869 647 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRL-FNFLRDERLRSEWDILSNGGPMQEMAHI 725 (872)
Q Consensus 647 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~l-f~fLrde~~R~eWd~ls~g~~~qe~~~i 725 (872)
...+|... . ..++|+|.+++.. +|.+ +..-++..-++.+|..+ +++|.| |.+||...- .++.+-.|
T Consensus 48 ~~~gW~~~-~--~~~gi~V~~k~~~--~~~~---~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~--~~~vle~i 114 (237)
T 2pso_A 48 KFKGWVTC-S--STDNTDLAFKKVG--DGNP---LKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFV--QWKVVETL 114 (237)
T ss_dssp HCCSCEEE-C--CSSSCEEEEECCC--SSCC---CCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBC--CCEEEEEE
T ss_pred CCCCCEEE-e--cCCCeEEEEEEcC--CCCC---cEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhc--eEEEEEEc
Confidence 45579877 2 3678999999852 2332 22346677778777665 567777 999997543 23444444
Q ss_pred ccCCCCCceEEEEEeccCC-CCCCceEEEEecccC-CCCcEEE-EeecchhhhhhhhcCCCCCCccccCCccEEccCCCC
Q 002869 726 AKGQDHGNCVSLLRASAIN-ANQSSMLILQETCTD-AAGSLVV-YAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPD 802 (872)
Q Consensus 726 a~g~~~gn~vsllr~~~~~-~~~~~~liLQesctd-~sgs~vV-yAPvD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg~~ 802 (872)
. ..+.|--....... ...++..++.-...| ..|++|| ...|+-+.+-.. |. =-+..+++||.|-|.+.
T Consensus 115 d----~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~~--g~--VR~~~~~~g~~i~P~~~- 185 (237)
T 2pso_A 115 D----RQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLL--GG--VRAVVMDSQYLIEPCGS- 185 (237)
T ss_dssp E----TTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCCC--SS--EECCEEEEEEEEEECST-
T ss_pred C----CCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCCC--Cc--EEEEEeccEEEEEECCC-
Confidence 2 23344433333322 234566666654445 3466665 445665543111 11 23467899999999632
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCccccccchhH-HhHhhhhHHHHHHHHHHhcc
Q 002869 803 SRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESV-ETVNNLISCTVQKIKAALQC 870 (872)
Q Consensus 803 ~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s~~~a~l~~~sv-~tv~~li~~tvq~Ik~Al~~ 870 (872)
++|.+|.-+|+=.... .+..+ ..+...+..++.++|.++..
T Consensus 186 ----------------------~~t~vt~~~~~Dp~G~-----iP~~ln~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 186 ----------------------GKSRLTHICRIDLKGH-----SPEWYSKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp ----------------------TCEEEEEEEEECCSSS-----CTTTTTTHHHHHHHHHHHHHHHTTSC
T ss_pred ----------------------CCEEEEEEEEeCCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688888877765533 12233 11333444588888888753
No 95
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=94.99 E-value=0.34 Score=43.34 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=40.8
Q ss_pred eEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHHH
Q 002869 550 VVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLA 605 (872)
Q Consensus 550 lIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce~la 605 (872)
-+++.++| |+|+|..+.+..-.-+..++.+++..-+.=+.++.+..|.+.+|..+
T Consensus 92 ~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~~~ 146 (147)
T 2d4r_A 92 VFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAAS 146 (147)
T ss_dssp EEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35677888 99999988887644455566666655555678899999999888753
No 96
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=94.86 E-value=0.11 Score=54.84 Aligned_cols=154 Identities=18% Similarity=0.269 Sum_probs=91.3
Q ss_pred CchhhhhHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeecccChhHHHHh
Q 002869 621 TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNF 700 (872)
Q Consensus 621 ~~~Gr~s~lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~lf~f 700 (872)
.++-+.+=+.|+.-.+.+...- ....+|.... ..++|+|.++.. +| .++-+...-+++||+.||++
T Consensus 41 ~~w~~~~~~~l~~~n~~al~~l---~~~~gW~~~~---~~~gv~Vy~~~~---~~-----~l~~k~~~~v~~~~~~v~~~ 106 (258)
T 3fo5_A 41 VPWDPSNQVYLSYNNVSSLKML---VAKDNWVLSS---EISQVRLYTLED---DK-----FLSFHMEMVVHVDAAQAFLL 106 (258)
T ss_dssp EECCGGGHHHHHHHHHHHHHHH---HTCSCCEEEE---EETTEEEEEEEC---SS-----CEEEEEEEEESSCHHHHHHH
T ss_pred cccCcccceecccCCHHHHHhh---hccCCCEEEe---cCCCeEEEEEEC---CC-----ceEEEEEEEEeCCHHHHHHH
Confidence 3466666677776666544422 2467899773 357899999642 22 34557777789999999999
Q ss_pred hhccccchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccC---CC-CCCceEEEEecccC-CCCc-EEE-Eeecchh
Q 002869 701 LRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI---NA-NQSSMLILQETCTD-AAGS-LVV-YAPVDIP 773 (872)
Q Consensus 701 Lrde~~R~eWd~ls~g~~~qe~~~ia~g~~~gn~vsllr~~~~---~~-~~~~~liLQesctd-~sgs-~vV-yAPvD~~ 773 (872)
|.|...|.+||... ...+.+-+|. ..+.|- +.... +. ...+..+|.-.-++ ..|. +|| .-.|+-+
T Consensus 107 L~D~~~R~~WD~~~--~~~~vle~id----~~~ivY--~~~~p~~~~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp 178 (258)
T 3fo5_A 107 LSDLRQRPEWDKHY--RSVELVQQVD----EDDAIY--HVTSPALGGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLP 178 (258)
T ss_dssp HHCGGGGGGTCTTC--CEEEEEEEEE----TTEEEE--EEEECCCTTCSSCEEEEEEEEEECCSSTTCCEEEEEEEEECT
T ss_pred HhCchhHhHhhhhc--cEEEEEEEcC----CCeEEE--EEecCCccCCCCCCEEEEEEEEEeccCCCCEEEEEEEeccCC
Confidence 99999999999643 2233444442 123332 33221 11 23455555543232 3453 444 3345544
Q ss_pred hhhhhhcCCCCCCc--cccCCccEEccCCC
Q 002869 774 AMHVVMNGGDSAYV--ALLPSGFAIVPDGP 801 (872)
Q Consensus 774 ~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~ 801 (872)
.+- .-+.+| ..+|+||.|-|.|.
T Consensus 179 ~~P-----p~~g~VR~~~~~sg~~I~P~~~ 203 (258)
T 3fo5_A 179 THR-----ETPEYRRGETLCSGFCLWREGD 203 (258)
T ss_dssp TSC-----CCTTSEECCCSSEEEEEEEEET
T ss_pred CCC-----CCCCCEEEEEcCcEEEEEECCC
Confidence 421 123444 68999999999543
No 97
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=87.29 E-value=10 Score=36.59 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=31.6
Q ss_pred ccceeEEechhHHHHHhcChhhhhhhcccccccceEeEEeeCC
Q 002869 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSG 442 (872)
Q Consensus 400 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g 442 (872)
..+.+|.-.+.++-+.+-|.++|-+.||.+ ...+|++.+
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~----~~~~vl~~~ 44 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEY----ASVEVLGRD 44 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSE----EEEEEEEEC
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCc----eEEEEEecC
Confidence 345667778889999999999999999885 667777754
No 98
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=86.16 E-value=14 Score=35.46 Aligned_cols=143 Identities=14% Similarity=0.071 Sum_probs=80.2
Q ss_pred ccceeEEechhHHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHH
Q 002869 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKI 479 (872)
Q Consensus 400 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (872)
.++..|.-.+..+-+.+-|.++|-+.+|.+ ..++|+..+. +. +.
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~~----~~~~v~~~~~-----~~-~~-------------------------- 51 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPPT----EKVEILEEGQ-----GY-QV-------------------------- 51 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSSE----EEEEEEEEET-----TE-EE--------------------------
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCccc----ceEEEEecCC-----CE-EE--------------------------
Confidence 345567778889999999999999999985 5666665432 11 11
Q ss_pred hhhhcccccceeeeEeeccccccceeeEEEeeeceecCce--EEEEEEecCCccCCCCCCCccceeecCCcce-EeecCC
Q 002869 480 KIKLFFSFLEMHAELQVLSPLVPVREVNFLRFCKQHAEGV--WAVVDVSIDTIRETSGAPAFVNCRRLPSGCV-VQDMPN 556 (872)
Q Consensus 480 ~~~~~~~~~~M~ael~~~SpLvp~Re~~flRyckq~~~g~--w~VvDvS~d~~~~~~~~~~~~~~~r~PSGcl-Iq~~~n 556 (872)
+++.+.-. ..++-+.-|+..+-++.. |-.++ .+ ++ |. .+ .|.. +++.++
T Consensus 52 ------------~~~~~~~~--G~~~~~~s~~~~~~~~~~i~~~~~~--~~----gp----f~---~~-~g~w~f~~~~~ 103 (172)
T 3tfz_A 52 ------------VRLHVDVA--GEINTWTSRRDLDPARRVIAYRQLE--TA----PI----VG---HM-SGEWRAFTLDA 103 (172)
T ss_dssp ------------EEEEEEET--TEEEEEEEEEEEETTTTEEEEEEEE--CC----TT----EE---EE-EEEEEEEEEET
T ss_pred ------------EEEEEecC--CEEEEEEEEEEEeCCCCEEEEEEee--CC----CC----hh---hc-EEEEEEEECCC
Confidence 22332111 223333334333322221 22221 01 11 10 00 1222 566667
Q ss_pred CccEEEEEEeeeeccccccccchhhhcc---------chhHHHHHHHHHHHHHHHHHHh
Q 002869 557 GYSKVTWVEHAEYDESQVHQLYKPLIIS---------GMGFGAQRWVATLQRQCECLAI 606 (872)
Q Consensus 557 G~skVtwVeH~e~d~~~v~~l~rpl~~S---------g~afGA~rw~atLqR~ce~la~ 606 (872)
|.|+|+|.-++++....+..++.++..- -+.=+.+.-|+.|.+++|+.+.
T Consensus 104 ~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~~~~L~~lk~~aE~~~~ 162 (172)
T 3tfz_A 104 ERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLGEAERRVR 162 (172)
T ss_dssp TEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 8999999999999887777777765421 1222234466677777776654
No 99
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=81.79 E-value=0.32 Score=42.81 Aligned_cols=43 Identities=9% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccc
Q 002869 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (872)
Q Consensus 139 trfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQN 184 (872)
.+||+++....-..+.... .....++|+++|+++..|..|.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHHH
Confidence 4688887765554453220 123668999999999999999743
No 100
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.99 E-value=0.35 Score=41.79 Aligned_cols=39 Identities=33% Similarity=0.420 Sum_probs=36.6
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeecc
Q 002869 145 QIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (872)
Q Consensus 145 Ql~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQ 183 (872)
-.+.|++.|+..+.+.......|+.+..|+..|||-||-
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 347899999999999999999999999999999999994
No 101
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=80.56 E-value=21 Score=34.73 Aligned_cols=58 Identities=7% Similarity=0.130 Sum_probs=37.1
Q ss_pred CcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHHHhh
Q 002869 547 SGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAIL 607 (872)
Q Consensus 547 SGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce~la~~ 607 (872)
...-+.+.++| |+|+|.-+.++++... +-.+.+...+.=..+..++.|.+.+|+.+..
T Consensus 93 g~W~f~p~~~g-t~V~~~~df~~~~~~p--~~~~~~~~av~~~~~~~L~~LK~~aE~~~~~ 150 (169)
T 3tvq_A 93 LHWTYRAVAGG-TEMRWVQEFDMKPGAP--FDNAHMTAHLNTTTRANMERIKKIIEDRHRE 150 (169)
T ss_dssp EEEEEEEETTE-EEEEEEEEEEECTTCS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCC-EEEEEEEEEEecCCCc--ccHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Confidence 34557788888 9999999999875521 1112222222222355788898899987763
No 102
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=78.08 E-value=11 Score=34.95 Aligned_cols=140 Identities=15% Similarity=0.169 Sum_probs=79.9
Q ss_pred cceeEEechhHHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHh
Q 002869 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIK 480 (872)
Q Consensus 401 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (872)
.+..|...+..+-+.+.|.++|.+.+|.+ ..++|+..+..| +|. -
T Consensus 6 ~s~~i~ap~~~v~~~v~D~~~~p~~~p~~----~~~~v~~~~~~~--g~~--~--------------------------- 50 (148)
T 1t17_A 6 VTKVLPYTPDQLFELVGDVDAYPKFVPWI----TGMRTWNGRVDG--AVS--T--------------------------- 50 (148)
T ss_dssp EEEEESSCTHHHHHHHTTTTCCSSCCSSC----CCCCEEEEEEET--TEE--E---------------------------
T ss_pred EEEEecCCHHHHHHHHHHHhhHHhhCCCc----CeeEEEEecCCC--CCc--e---------------------------
Confidence 45567778889999999999999999986 334555533211 011 1
Q ss_pred hhhcccccceeeeEeeccccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccE
Q 002869 481 IKLFFSFLEMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSK 560 (872)
Q Consensus 481 ~~~~~~~~~M~ael~~~SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk 560 (872)
+.+++.+- .-+.++-+..|+..+-.+ ..|.-..+++ +.. .+...++ +++.++| |+
T Consensus 51 ---------~~~~~~~~--~~~~~~~~~~~v~~~~~~--~~i~~~~~~G----~f~-~~~g~w~------f~~~~~g-t~ 105 (148)
T 1t17_A 51 ---------VDAEAQVG--FSFLREKFATRVRRDKDA--RSIDVSLLYG----PFK-RLNNGWR------FMPEGDA-TR 105 (148)
T ss_dssp ---------EEEEEECS--TTSSCCEEEEEEEEETTT--CEEEEEESST----TSS-CEEEEEE------EEEETTE-EE
T ss_pred ---------EEEEEEEE--ecceeEEEEEEEEEcCCC--cEEEEEECCC----Chh-ccEEEEE------EEECCCC-eE
Confidence 23444442 224566667777754333 2233333342 210 1122333 3567778 99
Q ss_pred EEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 002869 561 VTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 604 (872)
Q Consensus 561 VtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce~l 604 (872)
|++.-++|.... ++..+...-+.-.+++.+.++.+.|+.+
T Consensus 106 v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~f~~r~~~~ 145 (148)
T 1t17_A 106 VEFVIEFAFKSA----LLDAMLAANVDRAAGKLIACFEARAQQL 145 (148)
T ss_dssp EEEEEEECCSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988887522 3333443223345677777777777654
No 103
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=75.52 E-value=2.9 Score=42.89 Aligned_cols=174 Identities=14% Similarity=0.175 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEE-EEEEeeecc-cChhHHHHhhhccc
Q 002869 628 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDER 705 (872)
Q Consensus 628 ~lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~vl-~A~tS~wLp-v~p~~lf~fLrde~ 705 (872)
+-++.+...+.+-..+ ....+|.... ..++|+|.+++..+ . |.++ .-++..-++ ++|+.||++|.|..
T Consensus 28 ~~~~~~e~l~~~~~~~--~~~~~W~~~~---~~~gv~vy~~~~~~-~----g~~~~~~K~~~~~~~~~~~~v~~~l~d~~ 97 (255)
T 2e3n_A 28 VEEMVQNHMTYSLQDV--GGDANWQLVV---EEGEMKVYRREVEE-N----GIVLDPLKATHAVKGVTGHEVCNYFWNVD 97 (255)
T ss_dssp HHHHHHHHHHHTTSCC--TTCTTEEEEE---EETTEEEEEECCEE-T----TEECCCEEEEEEEETCCHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhhc--CCCCCcEEEE---eCCCEEEEEEEcCC-C----CceeeeEEEEEEEcCCCHHHHHHHHhCcc
Confidence 4444444444444333 2346899773 35789999998632 2 3321 123344456 89999999999999
Q ss_pred cchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccC-CCCCCceEEEEecccC----CC---CcEEEEeecchhhhhh
Q 002869 706 LRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI-NANQSSMLILQETCTD----AA---GSLVVYAPVDIPAMHV 777 (872)
Q Consensus 706 ~R~eWd~ls~g~~~qe~~~ia~g~~~gn~vsllr~~~~-~~~~~~~liLQesctd----~s---gs~vVyAPvD~~~m~~ 777 (872)
.|.+||...- .++.+-.| +.+..|--...... ....++..++.....+ .. .-+++.-.|+-+.+-
T Consensus 98 ~r~~Wd~~~~--~~~vle~i----~~~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P- 170 (255)
T 2e3n_A 98 VRNDWETTIE--NFHVVETL----ADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAP- 170 (255)
T ss_dssp GHHHHCCSEE--EEEEEEEE----ETTEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSC-
T ss_pred hHhhhhhhcc--eeEEEEEc----CCCCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCC-
Confidence 9999996421 12222222 11222332223221 2244566666643332 22 234444556554321
Q ss_pred hhcCCCCCCcc-----ccCCccEEccC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccC
Q 002869 778 VMNGGDSAYVA-----LLPSGFAIVPD-GP-DSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNS 839 (872)
Q Consensus 778 vm~G~d~~~v~-----lLPSGF~I~Pd-g~-~~~~~~a~~gss~~~~~~~~~~~~gSlLTvaFQil~~s 839 (872)
..+.+|- .|.+||.|.|. |. .... ..++|.+|.-.|+=...
T Consensus 171 ----~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~-----------------~~~~t~vt~~~~~Dp~G 218 (255)
T 2e3n_A 171 ----LNNRCVRAKINVAMICQTLVSPPEGNQEISR-----------------DNILCKITYVANVNPGG 218 (255)
T ss_dssp ----CCSSSEECEEEEEEEEEEEEC---CCCCCCG-----------------GGEEEEEEEEEEEECSS
T ss_pred ----CCCCCEEEEEEeeeeeeeEeccCCCCccccc-----------------CCCcEEEEEEEEeCCCC
Confidence 1123332 36789988884 22 1100 12468888887775543
No 104
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=73.87 E-value=6.1 Score=35.10 Aligned_cols=52 Identities=29% Similarity=0.479 Sum_probs=31.1
Q ss_pred hhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHH----HHHHHhhh
Q 002869 198 NSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGK 263 (872)
Q Consensus 198 ~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~----r~~~~a~~ 263 (872)
-..++-+.+.|+.+|..+.+... +..-....|..||.+||+|.. |++++.+|
T Consensus 22 I~lLqmEieELKekN~~L~~e~~--------------e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQ--------------NAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555432 001133458899999999985 66666655
No 105
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=72.24 E-value=45 Score=31.63 Aligned_cols=140 Identities=14% Similarity=0.069 Sum_probs=77.7
Q ss_pred cceeEEechhHHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHh
Q 002869 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIK 480 (872)
Q Consensus 401 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (872)
.+.+|.-.+..+-+.+.|.++|...||..+.- ...+ +|..+.
T Consensus 11 ~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~------~~~~-----~~~~~~--------------------------- 52 (161)
T 3p9v_A 11 RDLEIPASYDEVFDLLADVPKSASHFPKVDKL------VDLG-----NNAYRW--------------------------- 52 (161)
T ss_dssp EEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE------EEEE-----TTEEEE---------------------------
T ss_pred EEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE------EEcC-----CCceEE---------------------------
Confidence 45667778999999999999999999886543 1111 223333
Q ss_pred hhhcccccceeeeEeeccccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccE
Q 002869 481 IKLFFSFLEMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSK 560 (872)
Q Consensus 481 ~~~~~~~~~M~ael~~~SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~sk 560 (872)
+.|++.+-. ...|+-+..|+...-++. .+ +..+. +++ +. +.+-.-.-+++.++|.|+
T Consensus 53 ---------~~a~l~vg~--~~~~~~~~s~~~~~~~~~-~I--~~~~~---~g~----~~--~~l~g~w~f~p~~~g~t~ 109 (161)
T 3p9v_A 53 ---------EMEKVGVDK--HAIQSVYACTYHADKEAG-KI--TWSPI---KGE----GN--GVVSGSWTLSAKGDNATA 109 (161)
T ss_dssp ---------EECCBSSGG--GCBCCEEEEEEEEETTTT-EE--EEEEC---TTS----TT--EEEEEEEEEEESSSSCEE
T ss_pred ---------EEEEEeeee--EEEEEEEEEEEEEcCCCC-EE--EEEEe---cCc----cc--eeEEEEEEEEECCCCeEE
Confidence 334554432 234778888887654333 22 22221 122 10 111112335777888899
Q ss_pred EEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 002869 561 VTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 602 (872)
Q Consensus 561 VtwVeH~e~d~~~v~~l~rpl~~Sg~afGA~rw~atLqR~ce 602 (872)
|+|.-+.|..- .+..++..++..-+.-.+++-+.+..+-++
T Consensus 110 V~~~~~~e~~~-pl~~ll~~~~~~~~~~~~~~~v~af~~ra~ 150 (161)
T 3p9v_A 110 VKFQTSAELTV-PLPSLLKLAISPVIKHEFNSLVDTYMANLK 150 (161)
T ss_dssp EEEEEEEEEEE-CSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEcC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888861 123333333322222335666655544433
No 106
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=68.11 E-value=9.3 Score=34.27 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=10.6
Q ss_pred hhhHHHhHHHHHhhhhHHh
Q 002869 199 SLLRQENDKLRAENMSIRD 217 (872)
Q Consensus 199 ~~L~qenekL~~En~~l~e 217 (872)
..+..+.+.|..||..|+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~ 57 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQK 57 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345556666666555553
No 107
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=65.36 E-value=13 Score=31.18 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=30.7
Q ss_pred HHHhhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHH
Q 002869 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (872)
Q Consensus 194 ~r~e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~ 255 (872)
++.....+..+.+.|..+|..|+.. ..+|..|+..||+-+.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~---------------------i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKER---------------------ADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHh
Confidence 4555677888889999998888874 3467788888887653
No 108
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=63.56 E-value=2.7 Score=44.16 Aligned_cols=16 Identities=44% Similarity=0.569 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHH
Q 002869 239 EEQHLRIENARLKDEL 254 (872)
Q Consensus 239 e~q~L~~ENarLK~El 254 (872)
+.++|+.||++||+.|
T Consensus 44 ~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 44 EVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445777888777755
No 109
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=62.07 E-value=13 Score=33.68 Aligned_cols=68 Identities=21% Similarity=0.154 Sum_probs=42.4
Q ss_pred CCccceEEeeccchhhHHHHHHHHHhhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHH
Q 002869 172 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 251 (872)
Q Consensus 172 gLs~rQVKvWFQNRRaK~Kkqq~r~e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK 251 (872)
||+..+|.-|=|-||+-.-|-........-.++...|..++..+.. +.++|+.||++++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~---------------------e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ---------------------QVEQLKQEVSRLA 75 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 6777777777666665444433333334444445556666555543 5567888889998
Q ss_pred HHHHHHHHH
Q 002869 252 DELDRVCAL 260 (872)
Q Consensus 252 ~El~r~~~~ 260 (872)
.|++.+..-
T Consensus 76 ~e~d~~k~k 84 (90)
T 2wt7_B 76 RERDAYKVK 84 (90)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776543
No 110
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=57.48 E-value=28 Score=28.71 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=28.1
Q ss_pred HHHhhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHH
Q 002869 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (872)
Q Consensus 194 ~r~e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El 254 (872)
++.....+..+.+.|..+|..|... ...|+.|++.||..|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~---------------------i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSE---------------------VTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 4445666788888888888887763 446777777777654
No 111
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=54.11 E-value=1.3e+02 Score=27.58 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=27.2
Q ss_pred ceeEEechhHHHHHhcChhhhhhhcccccccceEeEEee
Q 002869 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 440 (872)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 440 (872)
+..|...+.++-+.|.|++.|.+-+|.+ ..++++.
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~~ 42 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGC----KSLELIG 42 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEeC
Confidence 3456667889999999999999999875 4566654
No 112
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=52.48 E-value=23 Score=31.09 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=7.6
Q ss_pred hHHHhHHHHHhhhhHH
Q 002869 201 LRQENDKLRAENMSIR 216 (872)
Q Consensus 201 L~qenekL~~En~~l~ 216 (872)
+....+.|..||..|+
T Consensus 41 ~~~r~~~L~~eN~~L~ 56 (78)
T 1gu4_A 41 TQHKVLELTAENERLQ 56 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555544443
No 113
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.49 E-value=18 Score=32.70 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCcc
Q 002869 221 NPICTNCGGPAII 233 (872)
Q Consensus 221 ~~~Cp~Cggp~~~ 233 (872)
...||.||.+...
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4569999997653
No 114
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=40.41 E-value=44 Score=28.73 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 002869 245 IENARLKDELDRV 257 (872)
Q Consensus 245 ~ENarLK~El~r~ 257 (872)
.||..|++++..+
T Consensus 50 ~en~~Lr~~i~~L 62 (70)
T 1gd2_E 50 LENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 115
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=40.36 E-value=18 Score=35.01 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=27.7
Q ss_pred EEEEeeecccChhHHHHhhhccccchhhhh
Q 002869 683 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 712 (872)
Q Consensus 683 ~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ 712 (872)
+...|+-+..||+.||+|++|...-.+|.-
T Consensus 28 ~~~~si~I~ap~eeVy~~~~D~e~lP~W~~ 57 (156)
T 2qpv_A 28 SRIIHLSVEKPWAEVYDFAANPGNMPRWAA 57 (156)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCG
T ss_pred ceEEEEEEcCCHHHHHHHHHChhhHHHHHH
Confidence 568899999999999999999999999975
No 116
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=39.88 E-value=39 Score=27.96 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=14.7
Q ss_pred HHhhhhhHHHhHHHHHhhhhHHh
Q 002869 195 RHENSLLRQENDKLRAENMSIRD 217 (872)
Q Consensus 195 r~e~~~L~qenekL~~En~~l~e 217 (872)
......|..+.+.|..+|..|..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777777777776665
No 117
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=38.57 E-value=27 Score=24.54 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 002869 241 QHLRIENARLKDELDRVC 258 (872)
Q Consensus 241 q~L~~ENarLK~El~r~~ 258 (872)
++|+..|+|||+|+.-+.
T Consensus 3 rrlkqknarlkqeiaale 20 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALE 20 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHH
Confidence 468899999999986554
No 118
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=35.08 E-value=16 Score=32.15 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=25.3
Q ss_pred EEEeeecccChhHHHHhhhccccchhhhh
Q 002869 684 AATSVWLPVSPQRLFNFLRDERLRSEWDI 712 (872)
Q Consensus 684 A~tS~wLpv~p~~lf~fLrde~~R~eWd~ 712 (872)
...+..++.||+.||++|.|..+..+|.-
T Consensus 4 ~~~~~~i~ap~~~V~~~l~d~~~~~~w~p 32 (147)
T 2d4r_A 4 VRAERYIPAPPERVYRLAKDLEGLKPYLK 32 (147)
T ss_dssp EEEEEEESSCHHHHHHHHHCHHHHGGGCT
T ss_pred EEEEEEeCCCHHHHHHHHhChhhhhhhcc
Confidence 34678899999999999999999999963
No 119
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.86 E-value=1.2e+02 Score=25.08 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=17.1
Q ss_pred HHHhhhhhHHHhHHHHHhhhhHHhh
Q 002869 194 ERHENSLLRQENDKLRAENMSIRDA 218 (872)
Q Consensus 194 ~r~e~~~L~qenekL~~En~~l~ea 218 (872)
+......|..+.+.|..+|..|+..
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~e 45 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTE 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777778888887777763
No 120
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.69 E-value=83 Score=25.59 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=27.3
Q ss_pred hhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHHHHHHH
Q 002869 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (872)
Q Consensus 200 ~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~El~r~~ 258 (872)
.++.++..|.+.|.+|.+.+. .-+.|...||+|++++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~---------------------~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK---------------------EARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhh
Confidence 356667777777777776553 46678888999998863
No 121
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=31.85 E-value=21 Score=32.36 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhh
Q 002869 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT 187 (872)
Q Consensus 137 ~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRa 187 (872)
+|.+||.++...+-..+.+...+. ..++|+++|++...|..|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 456799999877777775555443 336899999999999999766544
No 122
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.58 E-value=1.2e+02 Score=23.95 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 002869 239 EEQHLRIENARLKDELDRVCAL 260 (872)
Q Consensus 239 e~q~L~~ENarLK~El~r~~~~ 260 (872)
++|.|..--+.|++|+.|+...
T Consensus 25 deqnlekiianlrdeiarlene 46 (52)
T 3he5_B 25 DEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHH
Confidence 5677777777888888877654
No 123
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=30.77 E-value=19 Score=33.49 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=25.3
Q ss_pred EEEeeecccChhHHHHhhhccccchhhh
Q 002869 684 AATSVWLPVSPQRLFNFLRDERLRSEWD 711 (872)
Q Consensus 684 A~tS~wLpv~p~~lf~fLrde~~R~eWd 711 (872)
-..++.++.||++||++|.|..+..+|-
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~~~~w~ 32 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSILSKCI 32 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHS
T ss_pred EeeEEEecCCHHHHHHHhcCHHHHHhhC
Confidence 3467889999999999999999999996
No 124
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=30.15 E-value=22 Score=32.57 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=26.3
Q ss_pred EEEEeeecccChhHHHHhhhccccchhhh
Q 002869 683 SAATSVWLPVSPQRLFNFLRDERLRSEWD 711 (872)
Q Consensus 683 ~A~tS~wLpv~p~~lf~fLrde~~R~eWd 711 (872)
....+..++.||++||++|.|..+..+|-
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~ 42 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAF 42 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEeeEEEEcCCHHHHHHHHcCHHHHHhhC
Confidence 45678899999999999999999999996
No 125
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=29.27 E-value=18 Score=31.21 Aligned_cols=43 Identities=9% Similarity=0.241 Sum_probs=30.4
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeec
Q 002869 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 182 (872)
Q Consensus 135 KR~RtrfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWF 182 (872)
|+.+..|+.++....-..+... . ...++|+++|+++..|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 4455678988865555555432 1 25688999999999998885
No 126
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=27.64 E-value=19 Score=28.80 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeecc
Q 002869 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (872)
Q Consensus 139 trfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQ 183 (872)
..|+++........+... ........++|+++|+++.+|..|.+
T Consensus 4 ~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 468888877665555433 22112256899999999999999964
No 127
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=26.93 E-value=34 Score=32.07 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=26.5
Q ss_pred EEEEeeecccChhHHHHhhhccccchhhhh
Q 002869 683 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 712 (872)
Q Consensus 683 ~A~tS~wLpv~p~~lf~fLrde~~R~eWd~ 712 (872)
....|+.++.||+.||+|+.|..+-.+|--
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p 34 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLPGLPLLMT 34 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHST
T ss_pred EEEEEEEEcCCHHHHHHHHhCHHHhHHHhh
Confidence 346788899999999999999999999963
No 128
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=26.40 E-value=22 Score=32.56 Aligned_cols=56 Identities=27% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHHHHH
Q 002869 191 TQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDE 253 (872)
Q Consensus 191 kqq~r~e~~~L~qenekL~~En~~l~ea~~~~~Cp~Cggp~~~~~~~~e~q~L~~ENarLK~E 253 (872)
|+..-+++-.|....+++..||.+++..-... ..-..++..+..+|+.||.+|++|
T Consensus 32 KqELIqEYl~LE~~~s~le~e~~rlr~~~~~~-------~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 32 KQELIKEYLELEKSLSRMEDENNRLRLESKRL-------DARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------hhhHHHHHHHHHHHHHHHHHHHHH
No 129
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=26.12 E-value=40 Score=30.14 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=25.2
Q ss_pred EEEEeeecccChhHHHHhhhccccchhh
Q 002869 683 SAATSVWLPVSPQRLFNFLRDERLRSEW 710 (872)
Q Consensus 683 ~A~tS~wLpv~p~~lf~fLrde~~R~eW 710 (872)
....+..++.||++||+.|.|..+..+|
T Consensus 6 ~i~~~~~i~ap~e~Vw~~ltd~~~~~~W 33 (146)
T 2leq_A 6 IAQVKTVINAPIEKVWEALVNPEIIKEY 33 (146)
T ss_dssp EEEEEEEECSCHHHHHHHHSCTTHHHHH
T ss_pred eEEEEEEECCCHHHHHHHHcCHHHhcee
Confidence 3457788999999999999999999999
No 130
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=25.75 E-value=32 Score=31.66 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=25.2
Q ss_pred EEeeecccChhHHHHhhhccccchhhhh
Q 002869 685 ATSVWLPVSPQRLFNFLRDERLRSEWDI 712 (872)
Q Consensus 685 ~tS~wLpv~p~~lf~fLrde~~R~eWd~ 712 (872)
..|..++.||+.||+++.|-.+..+|--
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p 32 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVP 32 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCS
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCC
Confidence 4688999999999999999999999864
No 131
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=25.29 E-value=16 Score=27.20 Aligned_cols=43 Identities=9% Similarity=0.191 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhh
Q 002869 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT 187 (872)
Q Consensus 140 rfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRa 187 (872)
.+++++...+...+... ....++|+.+|++...|..|++....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 35666666655556533 23568999999999999999865443
No 132
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=24.06 E-value=43 Score=30.29 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=24.4
Q ss_pred EEeeecccChhHHHHhhhccccchhhh
Q 002869 685 ATSVWLPVSPQRLFNFLRDERLRSEWD 711 (872)
Q Consensus 685 ~tS~wLpv~p~~lf~fLrde~~R~eWd 711 (872)
..+..++.||++||+.|-|..+..+|-
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W~ 30 (135)
T 3q6a_A 4 ITKMQVDVPRETVFEAFVDPEKIGGFW 30 (135)
T ss_dssp EEEEEESSCHHHHHHHHHCTTTGGGTS
T ss_pred EEEEEeCCCHHHHHHHHcCHHHhcccC
Confidence 467788999999999999999999994
No 133
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.05 E-value=76 Score=33.52 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 002869 241 QHLRIENARLKDELDRVCA 259 (872)
Q Consensus 241 q~L~~ENarLK~El~r~~~ 259 (872)
++++.|..+||+|++++..
T Consensus 78 k~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 78 KEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4577789999999998763
No 134
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.92 E-value=96 Score=25.92 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002869 242 HLRIENARLKDELDRVCA 259 (872)
Q Consensus 242 ~L~~ENarLK~El~r~~~ 259 (872)
+|..||..|+.|+.++..
T Consensus 41 ~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 41 ELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555443
No 135
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.82 E-value=3.2 Score=40.29 Aligned_cols=31 Identities=3% Similarity=-0.087 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHH
Q 002869 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEK 162 (872)
Q Consensus 132 ~kkKR~RtrfT~eQl~~LE~~F~~~~yPs~~ 162 (872)
.+.||.|+.++..|++.|+..|+.++||...
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 3457788899999999999999999998753
No 136
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=23.72 E-value=35 Score=29.39 Aligned_cols=48 Identities=6% Similarity=0.093 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHH
Q 002869 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (872)
Q Consensus 140 rfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkq 192 (872)
.+++.|...|.-.|-.. ..-.++|+.+|+++..|+.+.+.=|.|.|+.
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47788888887755332 1367899999999999988876555555543
No 137
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Probab=23.28 E-value=44 Score=30.69 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=24.6
Q ss_pred EEEeeecccChhHHHHhhhccccchhhh
Q 002869 684 AATSVWLPVSPQRLFNFLRDERLRSEWD 711 (872)
Q Consensus 684 A~tS~wLpv~p~~lf~fLrde~~R~eWd 711 (872)
-..+.-++.||++||+.|-|+.+..+|-
T Consensus 13 i~~~~~i~ap~e~Vw~altdp~~~~~W~ 40 (145)
T 1x53_A 13 ITLKETFLTSPEELYRVFTTQELVQAFT 40 (145)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHHHhc
Confidence 3456788999999999999999999993
No 138
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.86 E-value=1.7e+02 Score=26.16 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 002869 242 HLRIENARLKDELDRVCALAG 262 (872)
Q Consensus 242 ~L~~ENarLK~El~r~~~~a~ 262 (872)
.|..|++.||+|+++++.+|.
T Consensus 57 ~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 57 QKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888777664
No 139
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=22.08 E-value=50 Score=34.50 Aligned_cols=19 Identities=32% Similarity=0.183 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002869 243 LRIENARLKDELDRVCALA 261 (872)
Q Consensus 243 L~~ENarLK~El~r~~~~a 261 (872)
...+...|++|.+|++.++
T Consensus 41 ~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 41 LESEVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5567788888999988765
No 140
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.80 E-value=2.7e+02 Score=25.54 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Q 002869 239 EEQHLRIENARLKDELDRVCALAG 262 (872)
Q Consensus 239 e~q~L~~ENarLK~El~r~~~~a~ 262 (872)
..++...+...|++|+++++....
T Consensus 69 a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 69 ARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888999999999887654
No 141
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=21.53 E-value=81 Score=23.58 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 002869 240 EQHLRIENARLKDELDRVCALA 261 (872)
Q Consensus 240 ~q~L~~ENarLK~El~r~~~~a 261 (872)
...|..+|..|.+|+.|++.+.
T Consensus 9 VEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 4478899999999999998875
No 142
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=21.53 E-value=3.9e+02 Score=25.42 Aligned_cols=123 Identities=11% Similarity=0.133 Sum_probs=0.0
Q ss_pred cceeEEechhHHHHHhcChhhhhhhcccccccceEeEEeeCCCCCCCCCcEEEeeeecchhhhhhhhHHHHHHHHHHHHh
Q 002869 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLVEFYNSIINEHLINYFLLIILVYKKIK 480 (872)
Q Consensus 401 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~Galql~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (872)
.+..|...+.++-++|.|-..| +-+|.++..+. +..|.+|+.-|++..
T Consensus 6 ~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e----~~eg~~~~~vGsvR~--------------------------- 53 (160)
T 3p51_A 6 NSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCK----KVGGGGGYSVGARRL--------------------------- 53 (160)
T ss_dssp EEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEE----EESSCCTTCTTCEEE---------------------------
T ss_pred EEEEECCCHHHHHHHHhCcCCC-eEccCceEEEE----EEecCCCCCCCCEEE---------------------------
Q ss_pred hhhcccccceeeeEeeccccccceeeEEEeeeceecCceEEEEEEecCCccCCCCCCCccc-----eeecCCcceEeecC
Q 002869 481 IKLFFSFLEMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVN-----CRRLPSGCVVQDMP 555 (872)
Q Consensus 481 ~~~~~~~~~M~ael~~~SpLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~-----~~r~PSGclIq~~~ 555 (872)
+ - -..+| .++.|-...--=.|-|++ ++ .. .+..=+=.-+.+.+
T Consensus 54 ---------~-------g--g~v~E-rl~~~D~~~~~~sY~ii~--------g~-----l~~~~~~~~~y~~~~~v~p~~ 101 (160)
T 3p51_A 54 ---------L-------N--GEFLD-TLIAYSEIERRIMYSMDE--------GP-----SPVSSGEIYNYVGNLHLLPVT 101 (160)
T ss_dssp ---------E-------T--TTEEE-EEEEEETTTTEEEEEEEE--------CS-----TTSSTTTEEEEEEEEEEEEET
T ss_pred ---------E-------C--CEEEE-EEEEEcCCCcEEEEEEec--------CC-----CcccccceeEEEEEEEEEEec
Q ss_pred -CCccEEEEEEeeeeccccccccchhhhccchh
Q 002869 556 -NGYSKVTWVEHAEYDESQVHQLYKPLIISGMG 587 (872)
Q Consensus 556 -nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~a 587 (872)
+|.|.|+|--.++.++..+....+.+|..|+.
T Consensus 102 ~~ggt~V~w~~~~~~~~~~~~~~~~~~~~~~L~ 134 (160)
T 3p51_A 102 IDDTTFVEWSGSWESASTEAVEYMNTVYRSLLA 134 (160)
T ss_dssp TTTEEEEEEEEEEEESCSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEEeCHHHHHHHHHHHHHHHHH
No 143
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=20.32 E-value=49 Score=30.09 Aligned_cols=47 Identities=13% Similarity=0.091 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCccceEEeeccchhhHHHHH
Q 002869 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (872)
Q Consensus 140 rfT~eQl~~LE~~F~~~~yPs~~qReeLA~~LgLs~rQVKvWFQNRRaK~Kkq 192 (872)
.+++.|...+...|+. ..-.++|+.+|+++..|+.+.+.=|.+.|+.
T Consensus 109 ~L~~~~r~v~~~~~~g------~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLTYLIRG------YSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHHHHTTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcC------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4777777777733322 2467899999999999988776555554443
No 144
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=20.31 E-value=58 Score=31.05 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=26.3
Q ss_pred EEEEeeecccChhHHHHhhhccccchhhh
Q 002869 683 SAATSVWLPVSPQRLFNFLRDERLRSEWD 711 (872)
Q Consensus 683 ~A~tS~wLpv~p~~lf~fLrde~~R~eWd 711 (872)
....|+.++.||+.||+++.|-....+|-
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~ 34 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLGYADIF 34 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHC
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHHHHhhC
Confidence 45688999999999999999999999995
Done!