Query 002870
Match_columns 872
No_of_seqs 294 out of 810
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 12:27:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2005 26S proteasome regulat 100.0 3E-233 6E-238 1919.7 64.7 832 24-870 26-859 (878)
2 COG5110 RPN1 26S proteasome re 100.0 8E-200 2E-204 1619.8 59.8 834 19-870 20-860 (881)
3 KOG2062 26S proteasome regulat 100.0 2E-136 4E-141 1154.2 47.3 730 48-837 6-771 (929)
4 COG5116 RPN2 26S proteasome re 100.0 5E-111 1E-115 924.2 38.2 748 49-856 7-789 (926)
5 KOG2062 26S proteasome regulat 100.0 4.9E-52 1.1E-56 470.1 31.3 544 151-787 30-658 (929)
6 COG5116 RPN2 26S proteasome re 100.0 1.1E-47 2.4E-52 423.8 26.2 545 150-785 29-653 (926)
7 KOG2005 26S proteasome regulat 100.0 5.4E-38 1.2E-42 352.9 30.2 475 175-718 236-744 (878)
8 COG5110 RPN1 26S proteasome re 100.0 4.4E-33 9.6E-38 307.5 28.9 560 83-718 144-745 (881)
9 KOG1858 Anaphase-promoting com 100.0 1.1E-30 2.3E-35 316.8 19.8 410 405-830 814-1316(1496)
10 KOG1858 Anaphase-promoting com 99.5 6.2E-13 1.3E-17 163.6 16.2 175 398-575 838-1060(1496)
11 PRK09687 putative lyase; Provi 99.2 5.5E-09 1.2E-13 114.0 25.8 246 430-710 25-277 (280)
12 PRK09687 putative lyase; Provi 99.1 9.2E-09 2E-13 112.3 24.6 243 466-746 24-276 (280)
13 PRK13800 putative oxidoreducta 99.0 6.2E-08 1.3E-12 121.6 29.6 288 407-748 607-895 (897)
14 PRK13800 putative oxidoreducta 98.8 5.8E-07 1.3E-11 113.0 24.3 262 403-711 630-895 (897)
15 TIGR02270 conserved hypothetic 98.3 7.2E-05 1.6E-09 86.0 21.2 211 466-714 55-266 (410)
16 TIGR02270 conserved hypothetic 98.3 9.2E-05 2E-09 85.1 21.8 220 486-750 45-265 (410)
17 COG1413 FOG: HEAT repeat [Ener 98.2 0.00037 7.9E-09 77.8 24.6 215 466-711 44-269 (335)
18 COG1413 FOG: HEAT repeat [Ener 97.9 0.0011 2.3E-08 74.1 20.9 219 499-748 42-269 (335)
19 KOG2171 Karyopherin (importin) 97.9 0.14 3E-06 64.3 39.5 150 46-239 4-154 (1075)
20 KOG0567 HEAT repeat-containing 97.7 0.0036 7.8E-08 66.8 20.1 228 441-715 49-280 (289)
21 PF01851 PC_rep: Proteasome/cy 97.7 5.1E-05 1.1E-09 56.8 4.2 35 670-704 1-35 (35)
22 PF01851 PC_rep: Proteasome/cy 97.7 4E-05 8.7E-10 57.4 3.4 30 484-513 1-30 (35)
23 PF13646 HEAT_2: HEAT repeats; 97.6 0.00022 4.9E-09 63.2 7.9 86 614-711 2-88 (88)
24 PF13646 HEAT_2: HEAT repeats; 97.4 0.00093 2E-08 59.2 9.5 87 653-748 2-88 (88)
25 PF01602 Adaptin_N: Adaptin N 96.9 0.084 1.8E-06 62.3 21.4 291 411-715 59-369 (526)
26 PF01602 Adaptin_N: Adaptin N 96.9 0.077 1.7E-06 62.7 20.8 288 425-733 39-348 (526)
27 KOG0166 Karyopherin (importin) 96.8 0.13 2.8E-06 60.4 21.5 242 469-721 113-399 (514)
28 PLN03200 cellulose synthase-in 96.7 0.4 8.7E-06 64.6 27.4 280 427-718 403-726 (2102)
29 PTZ00429 beta-adaptin; Provisi 96.5 0.75 1.6E-05 57.2 26.3 271 431-716 108-398 (746)
30 PLN03200 cellulose synthase-in 96.4 0.64 1.4E-05 62.8 26.5 271 406-688 458-772 (2102)
31 TIGR02917 PEP_TPR_lipo putativ 96.3 4.2 9.1E-05 50.0 40.5 252 418-695 609-864 (899)
32 TIGR02917 PEP_TPR_lipo putativ 96.1 5.6 0.00012 49.0 44.6 304 421-754 578-886 (899)
33 PRK11788 tetratricopeptide rep 95.9 4 8.6E-05 46.0 27.8 282 420-718 45-332 (389)
34 KOG0567 HEAT repeat-containing 95.8 0.66 1.4E-05 50.1 17.9 256 444-751 21-279 (289)
35 PF12755 Vac14_Fab1_bd: Vacuol 95.5 0.035 7.5E-07 51.4 6.5 79 630-708 2-90 (97)
36 KOG2171 Karyopherin (importin) 95.5 1.1 2.4E-05 56.5 21.1 265 430-714 120-417 (1075)
37 PF13513 HEAT_EZ: HEAT-like re 95.4 0.032 7E-07 45.4 5.3 48 665-712 1-54 (55)
38 COG5240 SEC21 Vesicle coat com 95.0 1.2 2.5E-05 52.6 17.7 275 449-735 208-584 (898)
39 PTZ00429 beta-adaptin; Provisi 94.7 16 0.00036 45.6 35.4 332 408-752 119-546 (746)
40 COG5064 SRP1 Karyopherin (impo 93.9 2.5 5.3E-05 47.2 16.6 238 476-722 126-406 (526)
41 KOG0213 Splicing factor 3b, su 93.3 26 0.00057 43.1 41.6 99 615-718 929-1027(1172)
42 KOG2023 Nuclear transport rece 93.1 4.4 9.6E-05 48.8 17.9 311 411-757 372-737 (885)
43 PRK11788 tetratricopeptide rep 92.9 19 0.00042 40.4 27.6 261 449-728 40-307 (389)
44 KOG1824 TATA-binding protein-i 92.7 2.1 4.5E-05 53.2 14.9 156 611-787 932-1100(1233)
45 PRK10049 pgaA outer membrane p 92.7 35 0.00077 42.9 28.6 178 568-757 247-443 (765)
46 smart00638 LPD_N Lipoprotein N 92.4 2.4 5.2E-05 51.2 15.5 175 567-746 349-539 (574)
47 cd00020 ARM Armadillo/beta-cat 92.3 0.83 1.8E-05 41.9 8.9 85 629-713 22-118 (120)
48 KOG1078 Vesicle coat complex C 92.2 8.4 0.00018 47.3 18.9 268 430-714 247-531 (865)
49 KOG0166 Karyopherin (importin) 91.0 1.3 2.9E-05 52.2 10.6 169 577-756 111-312 (514)
50 COG5181 HSH155 U2 snRNP splice 90.5 48 0.001 40.1 27.5 192 615-813 734-960 (975)
51 smart00638 LPD_N Lipoprotein N 90.2 9.1 0.0002 46.2 17.3 208 323-564 309-537 (574)
52 PF01347 Vitellogenin_N: Lipop 90.0 5 0.00011 48.8 14.9 209 325-564 347-581 (618)
53 PRK12370 invasion protein regu 89.7 36 0.00078 41.1 21.7 208 500-731 322-534 (553)
54 KOG4224 Armadillo repeat prote 89.6 8.3 0.00018 43.6 14.5 86 442-529 184-278 (550)
55 COG5096 Vesicle coat complex, 89.1 1.5 3.3E-05 54.0 9.4 87 628-716 106-196 (757)
56 PF05004 IFRD: Interferon-rela 88.1 25 0.00055 39.3 17.6 51 629-679 201-256 (309)
57 PF01347 Vitellogenin_N: Lipop 88.0 4.6 0.0001 49.1 12.7 172 567-744 387-581 (618)
58 KOG2259 Uncharacterized conser 87.9 13 0.00027 45.1 15.3 268 435-732 205-495 (823)
59 PRK15174 Vi polysaccharide exp 87.5 83 0.0018 38.9 28.1 298 406-731 72-380 (656)
60 KOG1824 TATA-binding protein-i 86.4 1.1E+02 0.0023 39.1 23.1 287 440-730 582-901 (1233)
61 KOG0915 Uncharacterized conser 84.6 8.9 0.00019 50.2 12.7 82 650-731 817-910 (1702)
62 COG5064 SRP1 Karyopherin (impo 84.5 65 0.0014 36.5 17.6 250 439-719 126-428 (526)
63 PF12348 CLASP_N: CLASP N term 84.4 13 0.00029 38.9 12.4 64 653-716 133-207 (228)
64 PF02985 HEAT: HEAT repeat; I 84.4 1.6 3.4E-05 31.5 3.7 26 688-713 2-27 (31)
65 KOG1059 Vesicle coat complex A 83.0 1.3E+02 0.0028 37.3 24.0 50 629-678 314-364 (877)
66 cd00020 ARM Armadillo/beta-cat 82.9 3.2 6.9E-05 38.0 6.2 66 652-718 9-81 (120)
67 PF12717 Cnd1: non-SMC mitotic 82.9 8.6 0.00019 39.2 9.9 88 629-716 3-93 (178)
68 PF13513 HEAT_EZ: HEAT-like re 82.4 2.5 5.4E-05 34.2 4.7 49 629-677 2-54 (55)
69 PRK12370 invasion protein regu 81.9 1.3E+02 0.0028 36.4 22.0 254 426-702 277-540 (553)
70 PRK10049 pgaA outer membrane p 81.1 1.6E+02 0.0035 37.1 28.3 167 564-739 278-463 (765)
71 COG3118 Thioredoxin domain-con 80.3 1E+02 0.0022 34.3 17.4 158 563-732 139-302 (304)
72 cd05804 StaR_like StaR_like; a 79.6 1.1E+02 0.0023 34.0 23.7 165 412-585 45-213 (355)
73 KOG0211 Protein phosphatase 2A 77.4 25 0.00053 44.1 12.9 104 610-716 556-665 (759)
74 KOG1517 Guanine nucleotide bin 77.1 5.7 0.00012 50.1 7.2 87 629-716 572-672 (1387)
75 PF03130 HEAT_PBS: PBS lyase H 76.5 2.7 5.9E-05 29.4 2.7 27 667-697 1-27 (27)
76 PF10508 Proteasom_PSMB: Prote 75.2 1.9E+02 0.0041 34.6 26.9 83 658-740 297-394 (503)
77 KOG1060 Vesicle coat complex A 74.3 2.4E+02 0.0052 35.5 21.7 95 431-529 111-207 (968)
78 PRK15174 Vi polysaccharide exp 74.2 2.3E+02 0.005 35.1 28.4 278 418-718 50-332 (656)
79 COG5181 HSH155 U2 snRNP splice 72.6 36 0.00078 41.1 11.8 181 434-624 694-892 (975)
80 COG5096 Vesicle coat complex, 71.7 13 0.00027 46.3 8.4 95 431-529 95-193 (757)
81 PF02985 HEAT: HEAT repeat; I 70.1 6.4 0.00014 28.3 3.4 25 654-678 3-27 (31)
82 PF05004 IFRD: Interferon-rela 70.1 15 0.00033 41.1 8.0 76 44-127 41-119 (309)
83 smart00567 EZ_HEAT E-Z type HE 69.4 6.7 0.00015 27.8 3.4 29 666-698 2-30 (30)
84 smart00299 CLH Clathrin heavy 69.0 41 0.00089 32.3 9.9 48 241-288 84-132 (140)
85 PF12717 Cnd1: non-SMC mitotic 67.7 60 0.0013 33.0 11.3 90 441-532 1-93 (178)
86 KOG1061 Vesicle coat complex A 67.4 3.3E+02 0.0071 34.1 19.3 260 438-716 96-380 (734)
87 KOG0985 Vesicle coat protein c 66.3 32 0.00068 43.8 10.0 139 142-289 949-1112(1666)
88 PF04053 Coatomer_WDAD: Coatom 64.9 46 0.001 39.2 11.0 50 240-293 390-439 (443)
89 PF04826 Arm_2: Armadillo-like 64.7 49 0.0011 36.1 10.4 76 610-688 11-91 (254)
90 KOG0212 Uncharacterized conser 64.3 31 0.00067 41.3 9.1 131 604-743 31-187 (675)
91 TIGR02521 type_IV_pilW type IV 61.6 1.7E+02 0.0038 28.9 18.4 20 599-618 140-159 (234)
92 PRK09782 bacteriophage N4 rece 60.2 5.1E+02 0.011 33.9 22.5 223 445-694 476-703 (987)
93 KOG1943 Beta-tubulin folding c 59.8 3.9E+02 0.0084 34.8 17.8 77 431-509 344-425 (1133)
94 KOG1061 Vesicle coat complex A 59.0 39 0.00084 41.7 9.0 102 612-718 87-192 (734)
95 KOG1062 Vesicle coat complex A 56.8 5.1E+02 0.011 32.8 20.0 126 650-781 312-450 (866)
96 cd06561 AlkD_like A new struct 55.7 1.6E+02 0.0035 29.9 12.0 76 654-730 108-184 (197)
97 PF08713 DNA_alkylation: DNA a 55.2 56 0.0012 33.8 8.6 77 651-728 120-196 (213)
98 KOG0915 Uncharacterized conser 55.0 6.8E+02 0.015 34.0 19.1 235 466-728 819-1081(1702)
99 KOG2025 Chromosome condensatio 54.6 79 0.0017 39.0 10.4 48 661-708 136-186 (892)
100 KOG4224 Armadillo repeat prote 54.1 1.5E+02 0.0033 34.0 11.8 64 656-719 213-284 (550)
101 KOG2025 Chromosome condensatio 53.9 5.4E+02 0.012 32.2 17.7 99 537-640 81-190 (892)
102 KOG1059 Vesicle coat complex A 53.0 4.9E+02 0.011 32.6 16.5 200 43-266 178-422 (877)
103 PF12755 Vac14_Fab1_bd: Vacuol 52.8 42 0.00091 31.1 6.3 79 667-745 2-90 (97)
104 KOG1240 Protein kinase contain 48.4 8.1E+02 0.018 32.7 23.4 83 629-711 593-681 (1431)
105 COG5098 Chromosome condensatio 48.4 31 0.00066 42.2 5.7 90 628-717 910-1003(1128)
106 KOG2076 RNA polymerase III tra 47.9 6E+02 0.013 32.5 16.6 189 33-267 131-344 (895)
107 PF04762 IKI3: IKI3 family; I 47.0 2.4E+02 0.0053 36.5 13.9 52 178-230 694-760 (928)
108 PF09384 UTP15_C: UTP15 C term 46.7 1.1E+02 0.0025 30.4 8.8 81 183-278 23-124 (148)
109 PF04053 Coatomer_WDAD: Coatom 45.8 1.6E+02 0.0034 34.8 11.2 107 180-292 297-416 (443)
110 PF12460 MMS19_C: RNAPII trans 44.8 3.4E+02 0.0073 31.5 13.7 88 630-720 251-357 (415)
111 TIGR02521 type_IV_pilW type IV 44.4 3.2E+02 0.007 26.9 17.5 17 422-438 43-59 (234)
112 PF04840 Vps16_C: Vps16, C-ter 43.8 5.2E+02 0.011 29.1 18.9 223 36-279 38-302 (319)
113 PF13429 TPR_15: Tetratricopep 43.7 98 0.0021 33.4 8.6 136 572-718 124-262 (280)
114 PF12711 Kinesin-relat_1: Kine 43.4 1.3E+02 0.0028 27.4 7.7 62 36-121 21-82 (86)
115 KOG3617 WD40 and TPR repeat-co 43.3 1E+02 0.0022 38.7 9.0 99 179-277 1081-1184(1416)
116 PF03130 HEAT_PBS: PBS lyase H 43.1 43 0.00094 23.4 3.7 24 519-546 2-25 (27)
117 KOG1240 Protein kinase contain 43.0 1.1E+02 0.0024 39.9 9.6 135 433-573 583-726 (1431)
118 cd05804 StaR_like StaR_like; a 42.1 5.1E+02 0.011 28.5 24.8 166 442-620 41-212 (355)
119 KOG2973 Uncharacterized conser 41.7 35 0.00077 38.1 4.6 78 35-121 231-313 (353)
120 PF09976 TPR_21: Tetratricopep 41.5 3.3E+02 0.0072 26.2 13.4 92 518-615 46-139 (145)
121 KOG1125 TPR repeat-containing 41.3 37 0.0008 40.7 5.0 140 60-206 366-526 (579)
122 KOG2114 Vacuolar assembly/sort 41.1 5.4E+02 0.012 32.8 14.6 67 172-238 362-432 (933)
123 PF04826 Arm_2: Armadillo-like 40.9 1.5E+02 0.0032 32.4 9.3 50 651-700 114-167 (254)
124 PF13170 DUF4003: Protein of u 40.5 5.6E+02 0.012 28.6 14.5 186 64-276 35-241 (297)
125 KOG0211 Protein phosphatase 2A 40.2 1.1E+02 0.0023 38.6 9.0 102 650-752 557-664 (759)
126 KOG4653 Uncharacterized conser 40.1 4.5E+02 0.0097 33.6 13.8 97 429-529 769-876 (982)
127 PF11768 DUF3312: Protein of u 39.4 1.6E+02 0.0035 35.5 9.8 95 184-278 414-533 (545)
128 KOG1943 Beta-tubulin folding c 38.6 3E+02 0.0065 35.7 12.3 141 611-757 341-505 (1133)
129 KOG4653 Uncharacterized conser 38.4 9.8E+02 0.021 30.7 18.1 72 435-507 734-809 (982)
130 KOG1060 Vesicle coat complex A 38.1 9.6E+02 0.021 30.6 23.1 87 408-494 122-209 (968)
131 KOG0414 Chromosome condensatio 37.5 1.3E+02 0.0029 39.1 9.2 88 628-715 937-1027(1251)
132 PLN03077 Protein ECB2; Provisi 37.3 9.8E+02 0.021 30.4 35.6 23 182-204 156-178 (857)
133 PF12719 Cnd3: Nuclear condens 36.8 3.5E+02 0.0075 29.9 11.7 86 629-714 42-142 (298)
134 PF06957 COPI_C: Coatomer (COP 36.1 68 0.0015 37.5 6.1 88 198-290 260-359 (422)
135 PF10363 DUF2435: Protein of u 34.5 2.6E+02 0.0057 25.6 8.5 81 430-511 5-88 (92)
136 KOG2023 Nuclear transport rece 33.7 79 0.0017 38.7 6.1 97 408-509 406-515 (885)
137 PF10363 DUF2435: Protein of u 32.9 2.1E+02 0.0046 26.2 7.6 45 684-728 41-85 (92)
138 TIGR00540 hemY_coli hemY prote 31.8 8.4E+02 0.018 28.0 22.2 130 485-622 86-215 (409)
139 KOG0292 Vesicle coat complex C 31.5 1.5E+02 0.0032 37.6 8.0 86 198-291 1047-1144(1202)
140 KOG2280 Vacuolar assembly/sort 31.4 4.1E+02 0.0088 33.4 11.5 98 173-292 489-586 (829)
141 PF12725 DUF3810: Protein of u 31.1 27 0.00058 39.3 1.7 82 111-195 212-303 (318)
142 PF12348 CLASP_N: CLASP N term 30.7 5.2E+02 0.011 26.8 11.3 91 661-751 104-205 (228)
143 smart00185 ARM Armadillo/beta- 30.6 77 0.0017 23.2 3.7 27 48-74 14-40 (41)
144 PRK11447 cellulose synthase su 30.1 1.4E+03 0.031 30.2 51.0 291 415-733 388-701 (1157)
145 COG5218 YCG1 Chromosome conden 29.5 1E+03 0.022 29.4 13.9 154 537-694 87-280 (885)
146 PF11698 V-ATPase_H_C: V-ATPas 29.3 1.2E+02 0.0027 29.2 5.6 29 687-715 87-115 (119)
147 KOG1820 Microtubule-associated 28.0 7.6E+02 0.016 31.7 13.6 82 650-731 370-459 (815)
148 TIGR03302 OM_YfiO outer membra 26.8 7.2E+02 0.016 25.6 15.4 27 522-548 72-98 (235)
149 PF09551 Spore_II_R: Stage II 26.8 82 0.0018 30.9 4.0 50 36-103 13-62 (130)
150 PHA03033 hypothetical protein; 26.4 30 0.00066 33.4 0.9 52 45-102 77-139 (142)
151 KOG0414 Chromosome condensatio 26.4 3.7E+02 0.008 35.3 10.4 114 588-704 935-1053(1251)
152 KOG1822 Uncharacterized conser 26.3 2E+03 0.044 30.7 17.3 68 575-644 915-989 (2067)
153 PF09295 ChAPs: ChAPs (Chs5p-A 25.9 4.6E+02 0.0099 30.6 10.5 39 159-203 187-225 (395)
154 PF00514 Arm: Armadillo/beta-c 25.7 1.2E+02 0.0026 22.8 4.0 27 48-74 14-40 (41)
155 KOG1058 Vesicle coat complex C 25.6 1.5E+03 0.032 28.9 19.2 73 433-510 104-181 (948)
156 PF10508 Proteasom_PSMB: Prote 25.5 1.2E+03 0.026 27.8 16.6 63 653-715 162-231 (503)
157 cd06561 AlkD_like A new struct 25.3 1.9E+02 0.004 29.4 6.7 65 629-696 120-185 (197)
158 PF05918 API5: Apoptosis inhib 25.3 1.7E+02 0.0036 35.6 7.0 95 610-707 58-154 (556)
159 TIGR02795 tol_pal_ybgF tol-pal 24.8 2.8E+02 0.0061 24.7 7.2 83 650-732 19-105 (119)
160 KOG1241 Karyopherin (importin) 24.4 1.5E+03 0.033 28.7 15.0 87 443-532 343-436 (859)
161 PF12272 DUF3610: Protein of u 24.1 55 0.0012 32.9 2.2 45 824-870 16-60 (157)
162 PF08625 Utp13: Utp13 specific 24.0 73 0.0016 31.6 3.1 31 248-278 6-36 (141)
163 TIGR02837 spore_II_R stage II 23.8 96 0.0021 31.7 3.9 52 35-104 47-98 (168)
164 PF13429 TPR_15: Tetratricopep 23.4 9.2E+02 0.02 25.8 12.0 130 531-671 121-254 (280)
165 PF12719 Cnd3: Nuclear condens 23.4 1E+03 0.022 26.2 12.5 141 45-190 63-207 (298)
166 KOG1517 Guanine nucleotide bin 23.3 2.3E+02 0.0051 36.7 7.8 102 616-718 600-735 (1387)
167 PF07539 DRIM: Down-regulated 22.9 1.1E+02 0.0023 30.4 4.1 46 50-108 21-66 (141)
168 PF06685 DUF1186: Protein of u 22.6 9.5E+02 0.021 26.2 11.5 88 571-662 69-161 (249)
169 PF13934 ELYS: Nuclear pore co 22.4 3.2E+02 0.007 29.1 7.9 89 186-278 86-182 (226)
170 TIGR00990 3a0801s09 mitochondr 21.2 1.5E+03 0.033 27.4 27.3 182 424-619 308-492 (615)
171 PF11239 DUF3040: Protein of u 20.6 1E+02 0.0022 27.5 3.1 25 36-63 2-26 (82)
172 PF00514 Arm: Armadillo/beta-c 20.5 1.4E+02 0.003 22.5 3.4 26 654-679 15-40 (41)
173 PF01122 Cobalamin_bind: Eukar 20.4 5.5E+02 0.012 29.2 9.4 136 598-733 53-224 (326)
174 TIGR00540 hemY_coli hemY prote 20.3 1.3E+03 0.029 26.4 24.4 286 411-719 83-385 (409)
175 PF13461 C-term_anchor: Cell-w 20.1 84 0.0018 26.0 2.3 34 814-852 2-39 (57)
No 1
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-233 Score=1919.66 Aligned_cols=832 Identities=65% Similarity=1.008 Sum_probs=803.9
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHh
Q 002870 24 KDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYE 103 (872)
Q Consensus 24 ~~~~~~~~~~~~~l~eed~~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye 103 (872)
++.++|+++|||+|||||+|||++||++|+|++|+|++|+++||++|+++||+|||||||||||||||||||++|+++|+
T Consensus 26 k~~~~k~~~k~e~lSEED~~lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~ 105 (878)
T KOG2005|consen 26 KKNKKKDKDKEEDLSEEDLQLKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYE 105 (878)
T ss_pred cccccccchhhhhccHHHHHhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHH
Confidence 33445666677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcchHHHHHHHHHHHhhhccCcccccchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhccCccCHHHHHHHHHH
Q 002870 104 TMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQE 183 (872)
Q Consensus 104 ~~~~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~wgheYvr~L~~ei~~~y~~~~~~~~~~~~L~~lv~~ 183 (872)
+|.+++.|+.+|||+|||+|||+. ..+.|+|||.|+..|+++||||||||||+||.++|+++....+.+++|..|+.+
T Consensus 106 ~~~~~n~Kk~laDIlSvLamt~se--~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~ 183 (878)
T KOG2005|consen 106 SMADSNLKKWLADILSVLAMTMSE--RGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQE 183 (878)
T ss_pred hccCchhHhHHHHHHHHHheeecc--cchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Confidence 999999999999999999999984 457799999999999999999999999999999999965555668999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccchHHHHHHHHhhcccCCCCChHHHHHHHHHHHHccCCHHHHHHHHH
Q 002870 184 IVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIAL 263 (872)
Q Consensus 184 iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~k~~~~~~al~~al 263 (872)
||+||||||+|.||||+++|+++||++.+|||++||+|+|+|+.+|++++|+|+|..++++++.||+|+++|++|+++||
T Consensus 184 iV~f~mkHNAE~eAiDlL~Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai 263 (878)
T KOG2005|consen 184 IVPFHMKHNAEFEAIDLLMEVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAI 263 (878)
T ss_pred HHHHHHhccchhHHHHHHHHhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHhcchHHHHHHHHHHHHhhcccccccCCCCCCcccHHHHHHHHcccCcchhHHHHHHHhhccCCCChH
Q 002870 264 FLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPE 343 (872)
Q Consensus 264 ~l~d~~~i~~i~~~~~d~~~~~Qlaf~larq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~~~k~~~ 343 (872)
+++|.+.|+++|.+|+|+.++||+||+||||++.+++.+ ++.+++|++|.+++++|++++||+++++||+||
T Consensus 264 ~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~--------~e~l~di~sN~~Lse~f~~LarELeimepk~pe 335 (878)
T KOG2005|consen 264 RLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSE--------DEELQDILSNGKLSEHFLYLARELEIMEPKVPE 335 (878)
T ss_pred hcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCc--------CHHHHHHHccccHHHHHHHHHHHhcccCCCChH
Confidence 999999999999999999999999999999999998742 478999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccCchhHHHHHHHhhhhcc
Q 002870 344 DIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILL 423 (872)
Q Consensus 344 ~iyK~~l~~~r~~~~~~~dsa~~~la~~~~nafvnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~~A~aslGlI~~ 423 (872)
+|||+|++++|...+.++||||||+|++|||||||+|||+||+|.+..+ +..+|+||||++++.+|+||+|+|.+
T Consensus 336 dIyK~hl~~~r~~s~a~vdSarqnla~~fvNgFVn~Gyg~Dkl~~~~~~-----s~~~w~yknke~g~~sa~aS~G~I~~ 410 (878)
T KOG2005|consen 336 DIYKSHLEDSRGGSGAGVDSARQNLAATFVNGFVNAGYGQDKLMLVQEG-----SRVNWLYKNKEHGMTSAAASLGMIQL 410 (878)
T ss_pred HHHHHHHhccccccccCccHHHHHHHHHHHHHHhhcccCCCceeccCcc-----ccCcceeeccccCchHhhhhcchhhe
Confidence 9999999998966678999999999999999999999999999998753 46679999999999999999999999
Q ss_pred ccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHH
Q 002870 424 WDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRH 503 (872)
Q Consensus 424 ~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e 503 (872)
||+|.|++++++|++++++|+++|||+|+|++++|+++||||++++|++|+.+++..+|+||+||||++|+||+++++..
T Consensus 411 Wnvd~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~ 490 (878)
T KOG2005|consen 411 WNVDKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLE 490 (878)
T ss_pred ecchhhHHHHHHHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHH
Q 002870 504 KLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEV 583 (872)
Q Consensus 504 ~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~ 583 (872)
.|.|++.|++.++|+.++|+|+||+||+||||++++..|++++|++.++++.+.|.||+++|||++|+|++|++|++.+.
T Consensus 491 lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~ 570 (878)
T KOG2005|consen 491 LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVET 570 (878)
T ss_pred HHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 99999999888999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhHHHHHHhhhcCCCHHHH--HHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhh
Q 002870 584 SKTFNEKIRKYCDMTLLSCAYAGTGNVLKV--QNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQ 661 (872)
Q Consensus 584 L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i--~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~ 661 (872)
++++++|+.++..+++.+|||+||||+.+| |.++|+|.+|..+.+..+..||+|+|+|+||+++|++|+.|+|+|+++
T Consensus 571 ~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~ 650 (878)
T KOG2005|consen 571 IKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLH 650 (878)
T ss_pred HHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999 889999999987644566799999999999999999999999999999
Q ss_pred cCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhhccChhhHH
Q 002870 662 YGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLF 741 (872)
Q Consensus 662 ~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~s~~~~d~~~~f 741 (872)
|++|+||+++|+|+|++|+|||+.+++|+|++++||.|.+|..+||||||+|||||||+|++++||||+|||+||+.++|
T Consensus 651 yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~mLrqlaSYyyKd~~~Lf 730 (878)
T KOG2005|consen 651 YGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLRQLASYYYKDSKALF 730 (878)
T ss_pred cCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHHHHHHHHHHhccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCceeecccCCCCCCCChHHHHHHHHHHHhhccccccccCchhHHHHHHhhhcccceeeeecCCCCcc
Q 002870 742 CVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPL 821 (872)
Q Consensus 742 ~~~lAqGll~~G~g~~tlsp~~sd~~~~~~~a~agLl~~l~~~~d~~~~i~~~~h~l~~~l~lA~~Pr~li~ld~~l~~~ 821 (872)
.+||||||+|+|||++|++|+|+||++++|+|+|||++++++++|++.+++.++||++|||++||+|||++|+|+++||+
T Consensus 731 ~vriAQGL~hlGKGtltl~p~~~dr~ll~p~alagl~t~~~~~LD~~i~l~~~~H~~ly~Lv~amqprm~~T~~e~~~pl 810 (878)
T KOG2005|consen 731 VVRIAQGLVHLGKGTLTLSPFHSDRQLLMPTALAGLLTTVFALLDANIILLVKSHYLLYFLVLAMQPRMLVTVDEELEPL 810 (878)
T ss_pred HHHHHHHHHHhcCCceecccccchhhhhchHHHHHHHHHHHHHhccchhccchHHHHHHHHHHhhCceEEEeecccCccc
Confidence 99999999999999999999999999999999999999999999999666668999999999999999999999999999
Q ss_pred ceeeeecccccccccCCccceeeceeeeecceeecccceeeeccccccc
Q 002870 822 SVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKSDI 870 (872)
Q Consensus 822 ~v~vrvgqavd~vg~ag~pk~itg~qt~~tpvll~~~erael~~~~y~~ 870 (872)
+|+|||||||||||||||||||||||||||||||+||||||||||||+-
T Consensus 811 ~V~VRVGqaVdvVGqaGrPKtITg~qTHtTPVlLahgeRAElatd~y~p 859 (878)
T KOG2005|consen 811 PVNVRVGQAVDVVGQAGRPKTITGFQTHTTPVLLAHGERAELATDEYLP 859 (878)
T ss_pred cceeeccchhhhhhccCCCceecceeccCcceecccchhhhhccccccc
Confidence 9999999999999999999999999999999999999999999999953
No 2
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-200 Score=1619.83 Aligned_cols=834 Identities=41% Similarity=0.685 Sum_probs=802.1
Q ss_pred CCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHH
Q 002870 19 VKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTL 98 (872)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~l~eed~~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l 98 (872)
|.+...++|.|+++++|.|||||.++|.+||++|+|++|+|++|+..+|.+|++.||+||||||.||||||||||||..+
T Consensus 20 ~e~~~~n~~~k~kee~e~lseed~~lk~dLellVeriqd~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl 99 (881)
T COG5110 20 PEKQTPNKKDKKKEEEEQLSEEDAMLKGDLELLVERIQDPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDL 99 (881)
T ss_pred cccCCCCccchhhhhHhhhchhhhhhcccHHHHHHHhhCCChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchH
Confidence 54444444445555678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhhccCcccccchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhccCccC-HHHH
Q 002870 99 KAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEAS-IDDL 177 (872)
Q Consensus 99 ~~~ye~~~~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~wgheYvr~L~~ei~~~y~~~~~~~~~-~~~L 177 (872)
.++|++|+.+..|+.+|||+|+++|+|+..+++++|+|||+|+..|+..|||||||||++||+++|..+.+.+.+ .+++
T Consensus 100 ~~iydkw~~~n~K~~LaDilS~l~m~yse~~kh~sL~YRl~g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt 179 (881)
T COG5110 100 LEIYDKWLEGNKKRWLADILSALCMVYSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADT 179 (881)
T ss_pred HHHHhhccCcchhhHHHHHHHHHeeecccccchhhHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhcchhhccCCchhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887765 6899
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccchHHHHHHHHhhcccCCCCChHHHHHHHHHHHHccCCHHH
Q 002870 178 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPN 257 (872)
Q Consensus 178 ~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~k~~~~~~ 257 (872)
.++-..||||+++||+|.+|||+++|++.||++.+|||.+||.|+|+|+.+|++.+|+|++..++++++.||+|++++.+
T Consensus 180 ~~l~l~ivpfflkHNaE~dAiDlL~Evg~Iekv~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~ 259 (881)
T COG5110 180 RDLGLEIVPFFLKHNAEFDAIDLLVEVGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTR 259 (881)
T ss_pred HHHHHHHhHHHHhcccchHHHHHHHHhcchhhhhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHhcchHHHHHHHHHHHHhhcccccccCCCCCCcccHHHHHHHHcccCcchhHHHHHHHhhcc
Q 002870 258 ALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVM 337 (872)
Q Consensus 258 al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~larq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~ 337 (872)
|+..|||+++.+.+++.+.+.+||.++||++|+||||++.++..+ ++++.||+|.+++++|++++|++|++
T Consensus 260 av~~aiRl~~~~~i~e~~~a~~Dp~~kKQ~~YiLArq~~~~e~~d---------ee~~dil~Ng~lsdhf~ylgkELnl~ 330 (881)
T COG5110 260 AVVGAIRLQKSKEIIEYVRAIEDPDYKKQCLYILARQNLYYEASD---------EEEKDILSNGYLSDHFRYLGKELNLD 330 (881)
T ss_pred HHHHHHhcccHHHHHHHHHhccChHHHHHHHHHHHhccCCcccCC---------HHHHHHhcCCcHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999998644 68999999999999999999999999
Q ss_pred CCCChHHHHHhhhccCCCCc-CcchhHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccCchhHHHHHH
Q 002870 338 EPKSPEDIYKAHLLDGRASA-GASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAA 416 (872)
Q Consensus 338 ~~k~~~~iyK~~l~~~r~~~-~~~~dsa~~~la~~~~nafvnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~~A~a 416 (872)
+||.||+|||+|++..|.+. .++++||.+|+|.+|+|+++|+|+.+|+++-.+. +|+||++..++.+|++
T Consensus 331 ~PkvpedI~K~hl~~~k~~~~~agi~sA~qnla~~fvn~~inlgy~nD~li~~dd---------~wiyk~k~~gliSa~a 401 (881)
T COG5110 331 KPKVPEDILKGHLKYDKDTRQLAGIGSANQNLAMGFVNDPINLGYENDSLIPLDD---------EWIYKCKVPGLISAFA 401 (881)
T ss_pred CCCChHHHHHhhhhccccchhhcccchhhhHHHHhhhccccccCccCCeeeecch---------hhhhcCCCCChhheee
Confidence 99999999999998666543 5789999999999999999999999999987654 4999999999999999
Q ss_pred HhhhhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccC
Q 002870 417 SLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGT 496 (872)
Q Consensus 417 slGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt 496 (872)
|+|+|..||.|.|++.|++|++.+.++.|+||++|+|+.+.++++|.+|++++|++||++++...+.+|+||||++|.|+
T Consensus 402 SIG~i~~WN~d~gl~~Ldkyly~de~~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt 481 (881)
T COG5110 402 SIGVIESWNSDKGLETLDKYLYADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGT 481 (881)
T ss_pred cchhhhhhhhHhhHHHHHHHHhcCcccccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhh
Q 002870 497 QNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES 576 (872)
Q Consensus 497 ~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~ 576 (872)
+++++.+.|.|++.+++.++|++++|+++||.||+||||+++...|+++++|+.+.+.+..|.||+++|+|++|+||+++
T Consensus 482 ~~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d~ 561 (881)
T COG5110 482 QAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYGRKDQ 561 (881)
T ss_pred cHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHccccch
Confidence 99999999999999888899999999999999999999999999999999999776667889999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCC-----ccchhhhHhHhhhhhhcchhhHhH
Q 002870 577 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKG-----EAYQGPAVLGIAMVAMAEELGLEM 651 (872)
Q Consensus 577 a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~-----~~vrr~Avl~iglI~~~~~~g~e~ 651 (872)
+|.+.+++.++++++.|...+++-+|+|+||||+..||.|||+|.+...|+ ..++..|++|+|+|+||+++|+||
T Consensus 562 ~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eM 641 (881)
T COG5110 562 VDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEM 641 (881)
T ss_pred hHHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHH
Confidence 999999999999999999999999999999999999999999998766552 246789999999999999999999
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhh
Q 002870 652 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSS 731 (872)
Q Consensus 652 ~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~s 731 (872)
+.|+|+|++||+++|||+.+|+|+|+++++||+++++|+|++++||.|..|..++|+|||+|||||+|+|++++|||++|
T Consensus 642 vlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT~NaRlaqlLrQlaS 721 (881)
T COG5110 642 VLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQMNVFDTLERSSHDGDLNVIINTIFAMGLIGAGTLNARLAQLLRQLAS 721 (881)
T ss_pred HHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcchHHHHHHHHhccccchhHHHHHHHHhhccccCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccChhhHHHHHHHHhhhhcCCCceeecccCCCCCCCChHHHHHHHHHHHhhccccccccCchhHHHHHHhhhccccee
Q 002870 732 YYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRML 811 (872)
Q Consensus 732 ~~~~d~~~~f~~~lAqGll~~G~g~~tlsp~~sd~~~~~~~a~agLl~~l~~~~d~~~~i~~~~h~l~~~l~lA~~Pr~l 811 (872)
||+|+.+++|.+||||||+++|||++|++|+|.|+..+.+++.|||+++.+.++|+++|.+..+|+++||+.++++|+++
T Consensus 722 YY~kes~aLfv~riAQGLl~LGKGtmti~p~~~d~~~l~~~~~agl~ttv~~lld~~~f~L~ssH~l~y~l~~~irp~~~ 801 (881)
T COG5110 722 YYYKESKALFVLRIAQGLLSLGKGTMTISPLYFDKTTLMPKNTAGLFTTVFMLLDSSIFPLVSSHALMYFLLCQIRPQKY 801 (881)
T ss_pred HHhhccchhhHHHHHHHHHHhcCCceeeccccccchhhcchhHHHHHHHHHHHHccccchhhhhHHHHHHHHhccCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred eeecCCCCccceeeeecccccccccCCccceeeceeeeecceeecccceeeeccccccc
Q 002870 812 LTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKSDI 870 (872)
Q Consensus 812 i~ld~~l~~~~v~vrvgqavd~vg~ag~pk~itg~qt~~tpvll~~~erael~~~~y~~ 870 (872)
+|++|+++|+||+|||||||+||||||+||.|||||||||||||+|+||||++||||+.
T Consensus 802 vtl~e~ge~i~vnvRVGqav~tVGqaGrPKkitgw~ThttPVlL~h~eRAEl~td~y~~ 860 (881)
T COG5110 802 VTLSEKGEPIKVNVRVGQAVNTVGQAGRPKKITGWQTHTTPVLLSHKERAELDTDEYNV 860 (881)
T ss_pred EEecCCCceeeeEEeecchhhhhhccCCCceeeeeeecCcceeeccchhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999975
No 3
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-136 Score=1154.22 Aligned_cols=730 Identities=22% Similarity=0.321 Sum_probs=676.3
Q ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCcchHHHHHHHHHHHhhhccC
Q 002870 48 LELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSA 127 (872)
Q Consensus 48 l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~~~ 127 (872)
.-.++.+|+|+.++|+.+||..++++|+.+|+ ++.+.++.||.+||+.+|+ .|+++|.++|+|| |++
T Consensus 6 Aa~lialL~e~~~~lk~~Al~~in~vVd~~Wp----------EIsd~l~~IE~lyed~~F~-er~~AaL~~SKVy--y~L 72 (929)
T KOG2062|consen 6 AAGLIALLREPEPSLKVHALFKINNVVDQFWP----------EISDSLPKIESLYEDETFP-ERQLAALLASKVY--YYL 72 (929)
T ss_pred hHHHHHHHhCCchHHHHHHHHHHHHHHHHhhH----------HhhhhHHHHHHHhccCCCc-hhHHHHHHHHHHH--HHH
Confidence 45688999999999999999999999999955 5555566999999999999 5999999999998 999
Q ss_pred cccccchhhhhcCC-CCCCCCcccHHHHHHHHHHHHHHHHhccCc-------cCH-HHHHHHHHHHHHHHhcCCCHHHHH
Q 002870 128 EGERESLKYRLLGS-EGDIGSWGHEYVRNLAGEIAQEYAKRQTDE-------ASI-DDLMELVQEIVAFHMKHNAEPEAV 198 (872)
Q Consensus 128 ~~~~~~L~y~L~~~-~~d~~~wgheYvr~L~~ei~~~y~~~~~~~-------~~~-~~L~~lv~~iv~~~l~~n~e~eAv 198 (872)
++|+++|.|+|.|+ .||+.+ +++|+.+++++|+|.|++.+.+. ..+ ++|+++|++|+..|+..|++.+|+
T Consensus 73 geye~Al~yAL~ag~~F~Vd~-~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~ai 151 (929)
T KOG2062|consen 73 GEYEDALEYALRAGDDFDVDE-NSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAI 151 (929)
T ss_pred HHHHHHHHHHHcCCccccccC-ccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99999999999995 899999 59999999999999999875431 123 699999999999999999999999
Q ss_pred HHHHhcCChhhhHH-HhhccchHHHHHHHHhhcccCCCCChH--HHHHHHHHHHHccC--CHHHHHHHHHhCCChHHHHH
Q 002870 199 DLLMEVEDLDLLVE-HVDATNFKRTCLYLTSAAKYLPGPDDM--LVLDIAYMIYLKFE--EFPNALQIALFLDNMQYVKQ 273 (872)
Q Consensus 199 dlalE~~~ld~i~~-~vd~~~~~rv~~Yl~~~~~~~~~p~~~--~vl~~~~~iy~k~~--~~~~al~~al~l~d~~~i~~ 273 (872)
+||+|++|+|+|++ .++.++....|.|++..+..++..+.| ++|+++++.|++.+ +|+..|+|.+.++|++.+.+
T Consensus 152 Gia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ 231 (929)
T KOG2062|consen 152 GIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVAD 231 (929)
T ss_pred hHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHH
Confidence 99999999999999 567788889999999999999998887 79999999999975 79999999999999999999
Q ss_pred HHHhc---chHHHHHHHHHHH---Hhhcccccc----cCCCCCCcccHHHHHHHHcccCcchhHHHHHHHhhccCCCChH
Q 002870 274 IFTSC---DDLLRKKQFCYIL---ARHGITLEL----DDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPE 343 (872)
Q Consensus 274 i~~~~---~d~~~~~Qlaf~l---arq~~~~~~----~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~~~k~~~ 343 (872)
+++++ +|.+++||+||+| +.|+|+..+ ...+..++..-+++..||||+...+++++|.-++|.+|..+++
T Consensus 232 ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~l~~d~~~de~p~~kii~ILSGe~tik~~l~FL~~~N~tD~~iL~ 311 (929)
T KOG2062|consen 232 LLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDRLPADDARDEKPMEKIISILSGEETIKLYLQFLLRHNNTDLLILE 311 (929)
T ss_pred HHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHHcccccccccChHHHHHHHhcCchHHHHHHHHHHHcCCchHHHHH
Confidence 99998 4589999999999 567776543 1112234455688999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccCchhHHHHHHHhhhhcc
Q 002870 344 DIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILL 423 (872)
Q Consensus 344 ~iyK~~l~~~r~~~~~~~dsa~~~la~~~~nafvnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~~A~aslGlI~~ 423 (872)
.| |..+ | .+.+|.|.+++|||||+||++|.|+|+|++ |+.|+++|+||+|+||||+||+
T Consensus 312 ~i-K~s~---r--------~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~---------WlskAtNWaKFtAtAsLGvIH~ 370 (929)
T KOG2062|consen 312 EI-KESV---R--------NSVCHTATLIANAFMHAGTTSDTFLRNNLD---------WLSKATNWAKFTATASLGVIHR 370 (929)
T ss_pred HH-HHHH---H--------HhhhhHHHHHHHHHHhcCCcchHHHHhchh---------HHhhcchHhhhhhhhhcceeec
Confidence 99 7654 3 467899999999999999999999999998 9999999999999999999999
Q ss_pred ccchhhHHhHhhhccC----CCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCC-CCHHHHHHHHHHHHHHhccCCC
Q 002870 424 WDVDSGLAQIDKYFHS----TDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGISYAGTQN 498 (872)
Q Consensus 424 ~~~~~~l~~l~~yL~s----~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGLay~Gt~~ 498 (872)
||..+|++++.+|||+ ++.|.++||++|+|+||+||..+ +..+|.+.|.+ +++++|||+|||||++.+||.+
T Consensus 371 G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~---~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~ 447 (929)
T KOG2062|consen 371 GHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG---ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN 447 (929)
T ss_pred cccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc---HHHHHHHHHHhccchhhhhhhhhhccchhccccc
Confidence 9999999999999997 68999999999999999999877 89999999976 4689999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhH
Q 002870 499 DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV 577 (872)
Q Consensus 499 ~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a 577 (872)
+++++.|+.+++ |+++++| +|++||||+++||.+.+++++|++| +++|| ||++.|++++|++|+.|||++.+
T Consensus 448 ~eiYe~lKevLy~D~AvsGE---AAgi~MGl~mlGt~~~eaiedm~~Y---a~ETQ-Heki~RGl~vGiaL~~ygrqe~A 520 (929)
T KOG2062|consen 448 EEIYEKLKEVLYNDSAVSGE---AAGIAMGLLMLGTANQEAIEDMLTY---AQETQ-HEKIIRGLAVGIALVVYGRQEDA 520 (929)
T ss_pred HHHHHHHHHHHhccchhhhh---HHHHhhhhHhhCcCcHHHHHHHHHH---hhhhh-HHHHHHHHHHhHHHHHhhhhhhh
Confidence 999999999997 8889999 7999999999999999999999998 67899 99999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHH
Q 002870 578 EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLE 657 (872)
Q Consensus 578 ~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~ 657 (872)
+.+|+.|..+.||+.||++++++++||+||||+.+|++|||++++|++| ||||+||+|||||++++| ++++++++
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nD--DVrRaAVialGFVl~~dp---~~~~s~V~ 595 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVND--DVRRAAVIALGFVLFRDP---EQLPSTVS 595 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccch--HHHHHHHHHheeeEecCh---hhchHHHH
Confidence 9999999999999999999999999999999999999999999999998 999999999999999999 99999999
Q ss_pred HHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC---chHHHHHHHHhhhhh-
Q 002870 658 HLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN---NARIAGMLRNLSSYY- 733 (872)
Q Consensus 658 ~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~---n~rv~~~lr~l~s~~- 733 (872)
.|++++|||||||+++|||++|||||+.+++++|+++++|++++|||+|+||+|||++|++ +|++..+++++.+.+
T Consensus 596 lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~ 675 (929)
T KOG2062|consen 596 LLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIN 675 (929)
T ss_pred HHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999998 699999999999876
Q ss_pred --ccChhhHHHHHHHHhhhhcCCCceeecccCCCCCCCChHHHHHHHHHHHhhccccccccCchhHHHHHHhhhccccee
Q 002870 734 --YKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRML 811 (872)
Q Consensus 734 --~~d~~~~f~~~lAqGll~~G~g~~tlsp~~sd~~~~~~~a~agLl~~l~~~~d~~~~i~~~~h~l~~~l~lA~~Pr~l 811 (872)
|+|.+++||+.+||||+++||+|+||+.. ++.|+.+..|++||++|+|.|+ ||+|.||++||+.|||+
T Consensus 676 dKhEd~~aK~GAilAqGildaGGrNvtislq-s~tg~~~~~~vvGl~~Flq~Wy---------WfPL~~flSLaf~PT~v 745 (929)
T KOG2062|consen 676 DKHEDGMAKFGAILAQGILDAGGRNVTISLQ-SMTGHTKLDAVVGLVVFLQYWY---------WFPLIHFLSLAFTPTTV 745 (929)
T ss_pred hhhhHHHHHHHHHHHhhhhhcCCceEEEEEe-ccCCCCchHHHHHHHHHHHHHH---------HHHHHHHHHHhcCcceE
Confidence 67899999999999999999999999998 8999999999999999999872 34599999999999999
Q ss_pred eeecCCCCccceeeeecccccccccC
Q 002870 812 LTVDENLKPLSVPVRVGQAVDVVGQA 837 (872)
Q Consensus 812 i~ld~~l~~~~v~vrvgqavd~vg~a 837 (872)
|++|+|||+|+++......-+....+
T Consensus 746 igln~dLk~Pk~e~~s~ak~~~faYP 771 (929)
T KOG2062|consen 746 IGLNEDLKIPKFEYISHAKPSLFAYP 771 (929)
T ss_pred EEeccccCCcceeeeccCChhhccCC
Confidence 99999999999999887777766664
No 4
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-111 Score=924.16 Aligned_cols=748 Identities=20% Similarity=0.259 Sum_probs=663.2
Q ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCcchHHHHHHHHHHHhhhccCc
Q 002870 49 ELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAE 128 (872)
Q Consensus 49 ~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~~~~ 128 (872)
..|.+.|.|-..+++.+||+.++..|+..| .++.+-++.||.+|+|.+|++ |+++|.++|++| |.++
T Consensus 7 ~~L~all~e~~d~~~~~Al~~In~~vDqlw----------peIsddl~~Ie~lydd~sf~~-remaaL~~SKvY--y~Lg 73 (926)
T COG5116 7 RILPALLAELRDGRESEALDVINAHVDQLW----------PEISDDLRYIEALYDDDSFDP-REMAALCLSKVY--YVLG 73 (926)
T ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHHHHhh----------hhhhchhhHHHHhhccCCCCH-HHHHHHHHHHHH--HHHH
Confidence 356677778788899999999999999995 466677779999999999984 999999999998 9999
Q ss_pred ccccchhhhhcCCC-CCCCCcccHHHHHHHHHHHHHHHHhccC-----ccC-H-HHHHHHHHHHHHHHhcCCCHHHHHHH
Q 002870 129 GERESLKYRLLGSE-GDIGSWGHEYVRNLAGEIAQEYAKRQTD-----EAS-I-DDLMELVQEIVAFHMKHNAEPEAVDL 200 (872)
Q Consensus 129 ~~~~~L~y~L~~~~-~d~~~wgheYvr~L~~ei~~~y~~~~~~-----~~~-~-~~L~~lv~~iv~~~l~~n~e~eAvdl 200 (872)
+|+++++|+|.++. |++.+ |+.|+++++.+|++-|.+...+ +.+ + +.|..+++.|+..|++.++..-+++|
T Consensus 74 eY~~Ai~yAL~agdrfl~D~-~S~y~etiv~k~iem~vh~~~~~y~~~~~d~iD~~l~~v~e~i~~kc~~~se~~~~lgI 152 (926)
T COG5116 74 EYQQAIEYALRAGDRFLVDD-GSFYYETIVYKSIEMYVHMMDSAYIGGDKDIIDRILDFVLEVIGAKCVDDSEIGYLLGI 152 (926)
T ss_pred hHHHHHHHHHhcCCceeecC-CccceehhHHhHHHHHHHHHHHhhhCCCcccchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999954 88888 7999999999999999977543 122 3 57889999999999999999999999
Q ss_pred HHhcCChhhhHHHhhccchHHHHHHHHhhcccCCCCChH--HHHHHHHHHHHcc--CCHHHHHHHHHhCCChHHHHHHHH
Q 002870 201 LMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDM--LVLDIAYMIYLKF--EEFPNALQIALFLDNMQYVKQIFT 276 (872)
Q Consensus 201 alE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~--~vl~~~~~iy~k~--~~~~~al~~al~l~d~~~i~~i~~ 276 (872)
++|.-|+|.|+.++...+..++..|++..+..++..+.+ ++|+.+.+++... .+|+-...|.+.|||.+.++++|+
T Consensus 153 a~eg~rldiie~~l~~~~d~di~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~ 232 (926)
T COG5116 153 AAEGLRLDIIEKYLSDGNDCDIINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIE 232 (926)
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHH
Confidence 999999999999999999999999999999999888887 6999999998876 368888899999999999999999
Q ss_pred hc---chHHHHHHHHHHH---HhhcccccccCCCCCCcccHHHHHHHHcccCcchhHHHHHHHhhccCCCChHHHHHhhh
Q 002870 277 SC---DDLLRKKQFCYIL---ARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHL 350 (872)
Q Consensus 277 ~~---~d~~~~~Qlaf~l---arq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~~~k~~~~iyK~~l 350 (872)
++ +|...--|+||++ +.|++.--+.....+ ...++.+..||||++..+++..|.-++|.+|.+.++.- |+.+
T Consensus 233 kL~~end~~l~aqvAFdledsasqe~leil~t~~vA-~~~d~av~~ILSGe~t~ky~~~FLl~~nntd~~~Ln~s-k~sl 310 (926)
T COG5116 233 KLVKENDLLLYAQVAFDLEDSASQEILEILVTELVA-QGYDQAVMSILSGEFTKKYLGAFLLEKNNTDFKFLNSS-KSSL 310 (926)
T ss_pred HHHhhhhhhhhhhheehhccccCHHHHHhccchhhh-ccccHHHHHHhcCcchhHHHHHHHHhcCCcceeehhcc-hhhh
Confidence 97 3444445999998 567776222110000 01246799999999999999999999999999999887 8777
Q ss_pred ccCCCCcCcchhHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccCchhHHHHHHHhhhhccccchhhH
Q 002870 351 LDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGL 430 (872)
Q Consensus 351 ~~~r~~~~~~~dsa~~~la~~~~nafvnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~~A~aslGlI~~~~~~~~l 430 (872)
+. | .++.|.|.+++|+|||.||++|.|+++|++ |+.|+.+|+||+|+||+|+||+|+..+|.
T Consensus 311 ~~-k--------~s~fH~avs~AN~fMn~GTs~dsf~r~Nl~---------wlgka~nWaKFtatAslGvIH~gn~n~~~ 372 (926)
T COG5116 311 AR-K--------FSRFHYAVSLANSFMNLGTSNDSFYRNNLD---------WLGKASNWAKFTATASLGVIHLGNSNPGY 372 (926)
T ss_pred hh-h--------hhhhhhHHHHHHHHhhcCCCcchHhhcCch---------hhhhcchHhhhhhhhhceeEeeccCCchh
Confidence 72 3 367899999999999999999999999998 99999999999999999999999999999
Q ss_pred HhHhhhccCC---CchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCC-C---HHHHHHHHHHHHHHhccCCCHHHHH
Q 002870 431 AQIDKYFHST---DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRE-D---ACIRIGAIMGLGISYAGTQNDQIRH 503 (872)
Q Consensus 431 ~~l~~yL~s~---~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~-~---~~v~~gA~lGLGLay~Gt~~~~i~e 503 (872)
+++.+|||++ +.++++||++|+|+|++|+..+ ..++|.+++.++ + +.+.+|+|||+|++.+||.|+++++
T Consensus 373 ~il~pYLP~e~ass~~~eGGalyalGLI~Agfgr~---~TeYL~e~~~~teDe~~~~l~yG~~LGiGL~~MgSan~eiye 449 (926)
T COG5116 373 EILKPYLPSEVASSRQKEGGALYALGLIKAGFGRE---DTEYLLEYFLDTEDELTPELAYGVCLGIGLINMGSANREIYE 449 (926)
T ss_pred HhhhccCCcccchhhhccCceeeeehhhccCcCcc---cHHHHHHHhCcccccccHHHHHHHHhhhcchhcccccHHHHH
Confidence 9999999964 5599999999999999998777 678888876543 3 5899999999999999999999999
Q ss_pred HHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHH
Q 002870 504 KLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAE 582 (872)
Q Consensus 504 ~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~ 582 (872)
.|+.++. |.++.+| +|+++|||+++||+..++++.|+++ +++|| |+++.|++++|++|+.||||+.++.+|.
T Consensus 450 ~lKe~l~nD~a~~ge---Aa~~gMGl~mLgt~s~eai~dm~ty---a~ETq-he~i~Rglgig~aLi~ygrqe~add~I~ 522 (926)
T COG5116 450 KLKELLKNDRALLGE---AAVYGMGLLMLGTWSVEAIEDMRTY---AGETQ-HERIKRGLGIGFALILYGRQEMADDYIN 522 (926)
T ss_pred HHHHHHhcchhhhhh---hhhhccceeeecCCCHHHHHHHHHH---hcchh-hhhHHhhhhhhhhHhhhhhHHHHHHHHH
Confidence 9999997 7767777 7999999999999999999999998 67899 9999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhc
Q 002870 583 VSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY 662 (872)
Q Consensus 583 ~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~ 662 (872)
.|..+.+|+.||++++++++||+||||..+|+.+||++++|.+| +|||+||+++|||++.++ ...+++++.|+.+
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nD--DVrRAAViAlGfvc~~D~---~~lv~tvelLs~s 597 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGND--DVRRAAVIALGFVCCDDR---DLLVGTVELLSES 597 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCch--HHHHHHHHheeeeEecCc---chhhHHHHHhhhc
Confidence 99999999999999999999999999999999999999999998 999999999999999999 8999999999999
Q ss_pred CChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC---chHHHHHHHHhhhhh---ccC
Q 002870 663 GEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN---NARIAGMLRNLSSYY---YKD 736 (872)
Q Consensus 663 ~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~---n~rv~~~lr~l~s~~---~~d 736 (872)
+|+|||+|+++|||+.|||+|...++|+|++++.|++++|||+|.||+|||.+|+| ||++..+.+.+.+.+ |++
T Consensus 598 hN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 598 HNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred cchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999 688888888877664 677
Q ss_pred hhhHHHHHHHHhhhhcCCCceeecccCCCCCCCChHHHHHHHHHHHhhccccccccCchh-HHHHHHhhhcccceeeeec
Q 002870 737 ANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYH-YVLYFLVLAMQPRMLLTVD 815 (872)
Q Consensus 737 ~~~~f~~~lAqGll~~G~g~~tlsp~~sd~~~~~~~a~agLl~~l~~~~d~~~~i~~~~h-~l~~~l~lA~~Pr~li~ld 815 (872)
..++||+.+||||..+||+|+||+.. +-+|.++-.+++||.+|+|.| || +|.||++|+|.||.+|+++
T Consensus 678 glaklGA~laqGi~~aGGRNvti~l~-natG~l~~~~ivGlv~FlqyW----------YWfPL~hf~SLsf~Pttvigi~ 746 (926)
T COG5116 678 GLAKLGAVLAQGISEAGGRNVTISLR-NATGILSADRIVGLVLFLQYW----------YWFPLIHFVSLSFLPTTVIGIR 746 (926)
T ss_pred HHHHHHHHHHhhhhhcCCceEEEEEe-cccCcccHHHHHHHHHHHHHH----------HHHHHHHHHhhhcCcceeeccc
Confidence 88999999999999999999999987 558999999999999999987 54 5999999999999999999
Q ss_pred CCCCccceeeeecccccccccCCcccee--eceeeeecceeec
Q 002870 816 ENLKPLSVPVRVGQAVDVVGQAGRPKTI--TGFQTHSTPVLLA 856 (872)
Q Consensus 816 ~~l~~~~v~vrvgqavd~vg~ag~pk~i--tg~qt~~tpvll~ 856 (872)
.++..|+......-.-+-...+.+--.- +-.|...|.||..
T Consensus 747 ~s~~~pkF~fn~~~~e~~f~yP~~~~e~s~k~v~kv~tavlst 789 (926)
T COG5116 747 GSQAIPKFCFNEDLEEEEFEYPRMYEEASGKSVRKVNTAVLST 789 (926)
T ss_pred ccccCceeeeccccCHhhhcCCccccccccchhhhhhhheech
Confidence 9999888887776666655553221111 2244556666654
No 5
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-52 Score=470.13 Aligned_cols=544 Identities=19% Similarity=0.254 Sum_probs=424.9
Q ss_pred HHHHHHHHHHHHHHHHhc--cCc--cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhH---HHhhccchHHHH
Q 002870 151 EYVRNLAGEIAQEYAKRQ--TDE--ASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLV---EHVDATNFKRTC 223 (872)
Q Consensus 151 eYvr~L~~ei~~~y~~~~--~~~--~~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~---~~vd~~~~~rv~ 223 (872)
..|..+.-||.+.-.... -.+ .+-+++.+|+.+.|+||+ ++|.+|+.+||.+++...+. +|++..-+..+-
T Consensus 30 ~vVd~~WpEIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~L--geye~Al~yAL~ag~~F~Vd~~S~y~etivak~id 107 (929)
T KOG2062|consen 30 NVVDQFWPEISDSLPKIESLYEDETFPERQLAALLASKVYYYL--GEYEDALEYALRAGDDFDVDENSDYVETIVAKCID 107 (929)
T ss_pred HHHHHhhHHhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHcCCccccccCccchhhHHHHHHHH
Confidence 445555566666533221 112 223589999999999999 99999999999999655332 233333334444
Q ss_pred HHHHhhcccCCCCC--------hHHHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHH-HHHhcchH---HHHHHHHHHH
Q 002870 224 LYLTSAAKYLPGPD--------DMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQ-IFTSCDDL---LRKKQFCYIL 291 (872)
Q Consensus 224 ~Yl~~~~~~~~~p~--------~~~vl~~~~~iy~k~~~~~~al~~al~l~d~~~i~~-i~~~~~d~---~~~~Qlaf~l 291 (872)
.|+..++...-.|+ ...|.+.++..|...++|.++++++++..+.+.+++ ++++-.+. ....-++.-+
T Consensus 108 ~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~ 187 (929)
T KOG2062|consen 108 MYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISL 187 (929)
T ss_pred HHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 67777765544333 346899999999999999999999999999999998 44442111 1111111111
Q ss_pred H-----hhccc-------ccccCCC----------CCCccc-------------------------HHHHHHHHcccC--
Q 002870 292 A-----RHGIT-------LELDDDM----------VPDDDD-------------------------RYALQDIVNNVK-- 322 (872)
Q Consensus 292 a-----rq~~~-------~~~~~~~----------~~~~~~-------------------------~~~l~~il~n~~-- 322 (872)
. |.+++ .+.+..+ -+|.+- ...-|++|....
T Consensus 188 v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~ 267 (929)
T KOG2062|consen 188 VNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDR 267 (929)
T ss_pred HhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHH
Confidence 1 22221 1110000 000000 011122222111
Q ss_pred ----cchhHHHHHHHhhccCCCChHHHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhccc-CCccccccCCCCCCCC
Q 002870 323 ----LSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGF-GQDKLMTVPSDASSGG 397 (872)
Q Consensus 323 ----l~~~~~~~~~~l~i~~~k~~~~iyK~~l~~~r~~~~~~~dsa~~~la~~~~nafvnaG~-~~D~~l~~~~~~~~~~ 397 (872)
-...+....+-.+|+++....++|..||.+++++|...+++.+.++ .|+..|..+ -++.||+.. +
T Consensus 268 l~~d~~~de~p~~kii~ILSGe~tik~~l~FL~~~N~tD~~iL~~iK~s~----r~sv~H~A~~iAN~fMh~G------T 337 (929)
T KOG2062|consen 268 LPADDARDEKPMEKIISILSGEETIKLYLQFLLRHNNTDLLILEEIKESV----RNSVCHTATLIANAFMHAG------T 337 (929)
T ss_pred cccccccccChHHHHHHHhcCchHHHHHHHHHHHcCCchHHHHHHHHHHH----HHhhhhHHHHHHHHHHhcC------C
Confidence 1112223456688999999999999999989999988888888775 677777665 589999876 4
Q ss_pred CCCccccccCchhHHHHHHHhhhhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCC-
Q 002870 398 SSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR- 476 (872)
Q Consensus 398 ~~~~wl~k~~~~~k~~A~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~- 476 (872)
++++|+..|-+| |....+|.|+.|..+||+||.|+.++ ++++|.+||+.
T Consensus 338 T~D~FlR~NL~W---------------------------lskAtNWaKFtAtAsLGvIH~G~~~~---~~~ll~pYLP~~ 387 (929)
T KOG2062|consen 338 TSDTFLRNNLDW---------------------------LSKATNWAKFTATASLGVIHRGHENQ---AMKLLAPYLPKE 387 (929)
T ss_pred cchHHHHhchhH---------------------------HhhcchHhhhhhhhhcceeeccccch---HHHHhhhhCCcc
Confidence 588999999999 45678999999999999999999877 89999999987
Q ss_pred ---CCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccc
Q 002870 477 ---EDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESE 553 (872)
Q Consensus 477 ---~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~ 553 (872)
.+.+...||++||||+++|+++. +.++|+..|.+.+ +..++++++|||||+.|||.|.++++.+...|+..
T Consensus 388 ~~~~s~y~EGGalyAlGLIhA~hG~~-~~~yL~~~Lk~~~-~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D---- 461 (929)
T KOG2062|consen 388 AGEGSGYKEGGALYALGLIHANHGRG-ITDYLLQQLKTAE-NEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYND---- 461 (929)
T ss_pred CCCCCCccccchhhhhhccccCcCcc-HHHHHHHHHHhcc-chhhhhhhhhhccchhcccccHHHHHHHHHHHhcc----
Confidence 46788899999999999999987 9999999997543 45678999999999999999999999999988632
Q ss_pred cCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhh
Q 002870 554 LGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGP 633 (872)
Q Consensus 554 l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~ 633 (872)
......++++|+||++ +||+|.+++..|++|+.+++++ .+.|+
T Consensus 462 -~AvsGEAAgi~MGl~m----------------------------------lGt~~~eaiedm~~Ya~ETQHe--ki~RG 504 (929)
T KOG2062|consen 462 -SAVSGEAAGIAMGLLM----------------------------------LGTANQEAIEDMLTYAQETQHE--KIIRG 504 (929)
T ss_pred -chhhhhHHHHhhhhHh----------------------------------hCcCcHHHHHHHHHHhhhhhHH--HHHHH
Confidence 2345677888888888 5899999999999999999998 89999
Q ss_pred hHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHh-hcCCchHHHHHHHHHHHH
Q 002870 634 AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL-SHDTDSEVAMAAVISLGL 712 (872)
Q Consensus 634 Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l-~~D~d~~Vr~~AiiAlGl 712 (872)
..+||+|++||+. |.+..++..|+.+.||.+||+..+++|+.|+||||..+|..|.++ .+|++++||+.|++|+||
T Consensus 505 l~vGiaL~~ygrq---e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGF 581 (929)
T KOG2062|consen 505 LAVGIALVVYGRQ---EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGF 581 (929)
T ss_pred HHHhHHHHHhhhh---hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHhee
Confidence 9999999999998 899999999999999999999999999999999999999998888 899999999999999999
Q ss_pred HcCCCCc--hHHHHHHHHhhhhhccChhhHHHHHHHHhhhhcCCCcee----ecccCCCC-CCCChHHHHHHHHHHHhhc
Q 002870 713 IGSGTNN--ARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLT----LNPYHSDR-FLLSPTALAGIVTTLFACL 785 (872)
Q Consensus 713 V~aGt~n--~rv~~~lr~l~s~~~~d~~~~f~~~lAqGll~~G~g~~t----lsp~~sd~-~~~~~~a~agLl~~l~~~~ 785 (872)
|...+++ +++.++|.. +.|||+|+|+.||+||.|+|+|+.. |.|+.+|. ++++|.|++++.+++.-+.
T Consensus 582 Vl~~dp~~~~s~V~lLse-----s~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 582 VLFRDPEQLPSTVSLLSE-----SYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred eEecChhhchHHHHHHhh-----hcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 9999986 788888887 6799999999999999999999985 99999998 9999999999999997654
Q ss_pred cc
Q 002870 786 DM 787 (872)
Q Consensus 786 d~ 787 (872)
|-
T Consensus 657 ~~ 658 (929)
T KOG2062|consen 657 EQ 658 (929)
T ss_pred cc
Confidence 43
No 6
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-47 Score=423.81 Aligned_cols=545 Identities=20% Similarity=0.246 Sum_probs=427.8
Q ss_pred cHHHHHHHHHHHHHHH--HhccCc--cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCh---hhhHHHhhccchHHH
Q 002870 150 HEYVRNLAGEIAQEYA--KRQTDE--ASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDL---DLLVEHVDATNFKRT 222 (872)
Q Consensus 150 heYvr~L~~ei~~~y~--~~~~~~--~~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~l---d~i~~~vd~~~~~rv 222 (872)
.++|..|..||.|.-. +..-.+ -+-++|.+|+.+.|+|.+ ++|.+|+.+||.+++- |.=..|.+.--|+.+
T Consensus 29 n~~vDqlwpeIsddl~~Ie~lydd~sf~~remaaL~~SKvYy~L--geY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~i 106 (926)
T COG5116 29 NAHVDQLWPEISDDLRYIEALYDDDSFDPREMAALCLSKVYYVL--GEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSI 106 (926)
T ss_pred HHHHHHhhhhhhchhhHHHHhhccCCCCHHHHHHHHHHHHHHHH--HhHHHHHHHHHhcCCceeecCCccceehhHHhHH
Confidence 5677778888877643 322222 234689999999999999 9999999999999973 322334444445555
Q ss_pred HHHHHhhcccCCCCC----hH---HHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhcchHH---HHHHHHHHHH
Q 002870 223 CLYLTSAAKYLPGPD----DM---LVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLL---RKKQFCYILA 292 (872)
Q Consensus 223 ~~Yl~~~~~~~~~p~----~~---~vl~~~~~iy~k~~~~~~al~~al~l~d~~~i~~i~~~~~d~~---~~~Qlaf~la 292 (872)
-.|+..+..-...++ |. -|++.+...|.+.+++--++++++.--+.|.++.+++.-.|.. ...-+|.-+.
T Consensus 107 em~vh~~~~~y~~~~~d~iD~~l~~v~e~i~~kc~~~se~~~~lgIa~eg~rldiie~~l~~~~d~di~~ylL~Lait~v 186 (926)
T COG5116 107 EMYVHMMDSAYIGGDKDIIDRILDFVLEVIGAKCVDDSEIGYLLGIAAEGLRLDIIEKYLSDGNDCDIINYLLDLAITLV 186 (926)
T ss_pred HHHHHHHHHhhhCCCcccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHh
Confidence 566666555444444 33 5999999999999999999999999888899998888743321 1111222221
Q ss_pred -----hhccc---ccc-cCCCC-------------CC----------------------------cccHHHHHHHHcccC
Q 002870 293 -----RHGIT---LEL-DDDMV-------------PD----------------------------DDDRYALQDIVNNVK 322 (872)
Q Consensus 293 -----rq~~~---~~~-~~~~~-------------~~----------------------------~~~~~~l~~il~n~~ 322 (872)
|..++ .++ ...+. +| +...+++.+||...-
T Consensus 187 ~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end~~l~aqvAFdledsasqe~leil~t~~ 266 (926)
T COG5116 187 EEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKENDLLLYAQVAFDLEDSASQEILEILVTEL 266 (926)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhhhhhhhhheehhccccCHHHHHhccchh
Confidence 22221 111 00000 00 001233444444443
Q ss_pred cchhHHHHHHHhhccCCCChHHHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCcc
Q 002870 323 LSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNW 402 (872)
Q Consensus 323 l~~~~~~~~~~l~i~~~k~~~~iyK~~l~~~r~~~~~~~dsa~~~la~~~~nafvnaG~~~D~~l~~~~~~~~~~~~~~w 402 (872)
..+.|- -..++|+++....++|.+||.++++++...+++++.+++.-|.- |=++++-++.||.-. +++++|
T Consensus 267 vA~~~d--~av~~ILSGe~t~ky~~~FLl~~nntd~~~Ln~sk~sl~~k~s~-fH~avs~AN~fMn~G------Ts~dsf 337 (926)
T COG5116 267 VAQGYD--QAVMSILSGEFTKKYLGAFLLEKNNTDFKFLNSSKSSLARKFSR-FHYAVSLANSFMNLG------TSNDSF 337 (926)
T ss_pred hhcccc--HHHHHHhcCcchhHHHHHHHHhcCCcceeehhcchhhhhhhhhh-hhhHHHHHHHHhhcC------CCcchH
Confidence 333332 24689999999999999999988999999999999999985533 555666788899765 458889
Q ss_pred ccccCchhHHHHHHHhhhhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCC---H
Q 002870 403 LFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED---A 479 (872)
Q Consensus 403 l~k~~~~~k~~A~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~---~ 479 (872)
+..|-+| |...++|.|+.|..+||.||.|+.++ .++.|.+||+... .
T Consensus 338 ~r~Nl~w---------------------------lgka~nWaKFtatAslGvIH~gn~n~---~~~il~pYLP~e~ass~ 387 (926)
T COG5116 338 YRNNLDW---------------------------LGKASNWAKFTATASLGVIHLGNSNP---GYEILKPYLPSEVASSR 387 (926)
T ss_pred hhcCchh---------------------------hhhcchHhhhhhhhhceeEeeccCCc---hhHhhhccCCcccchhh
Confidence 9888899 56678999999999999999999877 8999999998754 4
Q ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCC--CCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCch
Q 002870 480 CIRIGAIMGLGISYAGTQNDQIRHKLSTILNDA--KSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEP 557 (872)
Q Consensus 480 ~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~--~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~ 557 (872)
....||.+|||++++|.+ ++..|+|+..+.|+ ....+++++++|++||+.|||.|.++.+.+.+.+... +..
T Consensus 388 ~~eGGalyalGLI~Agfg-r~~TeYL~e~~~~teDe~~~~l~yG~~LGiGL~~MgSan~eiye~lKe~l~nD-----~a~ 461 (926)
T COG5116 388 QKEGGALYALGLIKAGFG-REDTEYLLEYFLDTEDELTPELAYGVCLGIGLINMGSANREIYEKLKELLKND-----RAL 461 (926)
T ss_pred hccCceeeeehhhccCcC-cccHHHHHHHhCcccccccHHHHHHHHhhhcchhcccccHHHHHHHHHHHhcc-----hhh
Confidence 677899999999999954 67899999776533 2356789999999999999999999999999887532 234
Q ss_pred hHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhH
Q 002870 558 LTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLG 637 (872)
Q Consensus 558 ~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~ 637 (872)
...++++|+||+++ ||+.+++|..|++|+.+++++ .++|+.-+|
T Consensus 462 ~geAa~~gMGl~mL----------------------------------gt~s~eai~dm~tya~ETqhe--~i~Rglgig 505 (926)
T COG5116 462 LGEAAVYGMGLLML----------------------------------GTWSVEAIEDMRTYAGETQHE--RIKRGLGIG 505 (926)
T ss_pred hhhhhhhccceeee----------------------------------cCCCHHHHHHHHHHhcchhhh--hHHhhhhhh
Confidence 66778888888884 799999999999999999997 899999999
Q ss_pred hhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHh-hcCCchHHHHHHHHHHHHHcCC
Q 002870 638 IAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL-SHDTDSEVAMAAVISLGLIGSG 716 (872)
Q Consensus 638 iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l-~~D~d~~Vr~~AiiAlGlV~aG 716 (872)
++||.||++ ||+.+++..|..+.||..||+..|++|++|+||+|..++..|.++ .+|.+++||++|++|+|+|.+.
T Consensus 506 ~aLi~ygrq---e~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~ 582 (926)
T COG5116 506 FALILYGRQ---EMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD 582 (926)
T ss_pred hhHhhhhhH---HHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEec
Confidence 999999998 999999999999999999999999999999999999999999888 8999999999999999999999
Q ss_pred CCc--hHHHHHHHHhhhhhccChhhHHHHHHHHhhhhcCCCcee----ecccCCCC-CCCChHHHHHHHHHHHhhc
Q 002870 717 TNN--ARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLT----LNPYHSDR-FLLSPTALAGIVTTLFACL 785 (872)
Q Consensus 717 t~n--~rv~~~lr~l~s~~~~d~~~~f~~~lAqGll~~G~g~~t----lsp~~sd~-~~~~~~a~agLl~~l~~~~ 785 (872)
..+ +++.++|.. +.|+++|.|+.+|+||.|+|+|.-. |+|+..|. ++++|.|++|+.+++.-+-
T Consensus 583 D~~~lv~tvelLs~-----shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 583 DRDLLVGTVELLSE-----SHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred CcchhhHHHHHhhh-----ccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 887 456666665 5799999999999999999999874 89988998 9999999999999987553
No 7
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-38 Score=352.91 Aligned_cols=475 Identities=18% Similarity=0.252 Sum_probs=371.3
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhc---cchHHHHHHHHhhcccCCCCC-hHHHHHHHHHHHH
Q 002870 175 DDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDA---TNFKRTCLYLTSAAKYLPGPD-DMLVLDIAYMIYL 250 (872)
Q Consensus 175 ~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~---~~~~rv~~Yl~~~~~~~~~p~-~~~vl~~~~~iy~ 250 (872)
++=..+.+.+...++|.|++++|+.+|+..++++.+.++++. ..+.+.|.|++..++...+-. +.++-+++.+-
T Consensus 236 Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~sN~-- 313 (878)
T KOG2005|consen 236 PDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSEDEELQDILSNG-- 313 (878)
T ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCcCHHHHHHHccc--
Confidence 344678888899999999999999999999999999999876 346899999999998877664 35666777666
Q ss_pred ccCCHHHHHHHHHhCCChHHHHHHHHhc-chHHHHHHHHHHHHhhcccccccCCCCCCcccHHHHHHHHcccCcchhHHH
Q 002870 251 KFEEFPNALQIALFLDNMQYVKQIFTSC-DDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLT 329 (872)
Q Consensus 251 k~~~~~~al~~al~l~d~~~i~~i~~~~-~d~~~~~Qlaf~larq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~ 329 (872)
+.++++.++..-+++.+|+..++||+.+ +|...----.-+.|||++...+ .+.|++
T Consensus 314 ~Lse~f~~LarELeimepk~pedIyK~hl~~~r~~s~a~vdSarqnla~~f-----------------------vNgFVn 370 (878)
T KOG2005|consen 314 KLSEHFLYLARELEIMEPKVPEDIYKSHLEDSRGGSGAGVDSARQNLAATF-----------------------VNGFVN 370 (878)
T ss_pred cHHHHHHHHHHHhcccCCCChHHHHHHHHhccccccccCccHHHHHHHHHH-----------------------HHHHhh
Confidence 4557999999999999999999999986 3332111111345566555433 234554
Q ss_pred H--HHHhhccCCC--ChHHHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccC-CccccccCCCCCCCCCCCcccc
Q 002870 330 L--ARDIEVMEPK--SPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDKLMTVPSDASSGGSSGNWLF 404 (872)
Q Consensus 330 ~--~~~l~i~~~k--~~~~iyK~~l~~~r~~~~~~~dsa~~~la~~~~nafvnaG~~-~D~~l~~~~~~~~~~~~~~wl~ 404 (872)
. +++.-++++. ...|+||+... .+-||.++++.+..| -+..|.. -|++++.
T Consensus 371 ~Gyg~Dkl~~~~~~s~~~w~yknke~--------g~~sa~aS~G~I~~W-nvd~gL~qldkylys--------------- 426 (878)
T KOG2005|consen 371 AGYGQDKLMLVQEGSRVNWLYKNKEH--------GMTSAAASLGMIQLW-NVDKGLEQLDKYLYS--------------- 426 (878)
T ss_pred cccCCCceeccCccccCcceeecccc--------CchHhhhhcchhhee-cchhhHHHHHHHhhc---------------
Confidence 3 4666666544 56799998754 233778788776554 5666754 6666654
Q ss_pred ccCchhHHHHHHHhhhhccc---cchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHH-
Q 002870 405 KNKEHGKMSAAASLGMILLW---DVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDAC- 480 (872)
Q Consensus 405 k~~~~~k~~A~aslGlI~~~---~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~- 480 (872)
+.++.|.+|..++|++..| +.++++++|..|+.+++...+.||++|||+.++|..+|. ++.+|++.+.+.+..
T Consensus 427 -~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~--V~~lL~Pi~~d~~~~~ 503 (878)
T KOG2005|consen 427 -DESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREE--VLELLSPIMFDTKSPM 503 (878)
T ss_pred -CCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHH--HHHHHhHHhcCCCCch
Confidence 4458999999999999987 467899999999999999999999999999999998764 777999999887655
Q ss_pred -HHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCC---CchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCc
Q 002870 481 -IRIGAIMGLGISYAGTQNDQIRHKLSTILNDAK---SPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGE 556 (872)
Q Consensus 481 -v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~~---~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e 556 (872)
+..-|.++||++|+||||+|+...++..+++.+ ....+.++-+||||++|+|+++ .+++....++. +.+
T Consensus 504 ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe--~~d~~~e~~~~-----i~~ 576 (878)
T KOG2005|consen 504 EVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQE--SVDAVVETIKA-----IEG 576 (878)
T ss_pred hHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccc--hHHHHHHHHHH-----hhh
Confidence 455699999999999999999999999887432 2345678999999999999984 66777776643 257
Q ss_pred hhHhHHH-HHHHhhhcCChh--hH--HHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCH----HHH---HHHHHhhcccC
Q 002870 557 PLTRLIP-LGLGLLYLGKQE--SV--EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV----LKV---QNLLGHCAQHH 624 (872)
Q Consensus 557 ~~~r~~~-lglgLl~~G~~e--~a--~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~----~~i---~~LL~~~~~~~ 624 (872)
++.+++. +-.+|.|.|+++ .+ +.++..+.+....-.......++|||....|+. .++ .++|||..+
T Consensus 577 ~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~-- 654 (878)
T KOG2005|consen 577 PIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEP-- 654 (878)
T ss_pred HHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCH--
Confidence 8888877 445899999998 34 566666665544444555578899999998874 333 356777543
Q ss_pred CCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhh----cCCch
Q 002870 625 EKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLS----HDTDS 700 (872)
Q Consensus 625 ~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~----~D~d~ 700 (872)
.+||+.++++|+++.++|. -.+.+++++++|+.|+.|.+.+++||||+.|||+|.++..+|++++ +|++.
T Consensus 655 ----~iRravPLal~llsvSNPq--~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~mLrqlaSYyyKd~~~ 728 (878)
T KOG2005|consen 655 ----HIRRAVPLALGLLSVSNPQ--VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLRQLASYYYKDSKA 728 (878)
T ss_pred ----HHHHHHHHHHhhhccCCCc--chHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHHHHHHHHHHhccchh
Confidence 7999999999999999994 7899999999999999999999999999999999999999999885 46554
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 002870 701 EVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 701 ~Vr~~AiiAlGlV~aGt~ 718 (872)
. .-..||+|++..|.+
T Consensus 729 L--f~vriAQGL~hlGKG 744 (878)
T KOG2005|consen 729 L--FVVRIAQGLVHLGKG 744 (878)
T ss_pred H--HHHHHHHHHHHhcCC
Confidence 3 112399999999876
No 8
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-33 Score=307.49 Aligned_cols=560 Identities=18% Similarity=0.224 Sum_probs=407.3
Q ss_pred cCCCccc--hhhhhHHHHHHHHhc---CC---CcchHHHHHHHHHHHhhhccCcccccchhhhhcCCCCCCCCcccHHHH
Q 002870 83 SVPKPLK--FLRPHYGTLKAYYET---MP---DSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVR 154 (872)
Q Consensus 83 svpkplk--~l~~~~~~l~~~ye~---~~---~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~wgheYvr 154 (872)
+=||-|- |+|--...|.+.|.+ +. |.+.|+++-+|+-++. -|. ...|++.+-+.=+..+ .- -.||.
T Consensus 144 ~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt~~l~l~ivpffl--kHN-aE~dAiDlL~Evg~Ie--kv-~~fVd 217 (881)
T COG5110 144 IDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGLEIVPFFL--KHN-AEFDAIDLLVEVGGIE--KV-LDFVD 217 (881)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcchhhccCCchhHHHHHHHHHhHHHH--hcc-cchHHHHHHHHhcchh--hh-hhhhc
Confidence 3355553 566667778888862 11 3346777777777774 343 3457777665532211 00 12232
Q ss_pred HHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhc---cchHHHHHHHHhhcc
Q 002870 155 NLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDA---TNFKRTCLYLTSAAK 231 (872)
Q Consensus 155 ~L~~ei~~~y~~~~~~~~~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~---~~~~rv~~Yl~~~~~ 231 (872)
+=-..=+--|..-+..--+.++-.++.+.+...+++.|+..+|+-.|++.+..+.|.++++. ..|.+.|+|++..++
T Consensus 218 ~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~av~~aiRl~~~~~i~e~~~a~~Dp~~kKQ~~YiLArq~ 297 (881)
T COG5110 218 THNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTRAVVGAIRLQKSKEIIEYVRAIEDPDYKKQCLYILARQN 297 (881)
T ss_pred ccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccHHHHHHHHHhccChHHHHHHHHHHHhcc
Confidence 21111122344433332234566888999999999999999999999999999999999875 568999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhc-chHHHHHHHH-HHHHhhcccccccCCCCCCcc
Q 002870 232 YLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSC-DDLLRKKQFC-YILARHGITLELDDDMVPDDD 309 (872)
Q Consensus 232 ~~~~p~~~~vl~~~~~iy~k~~~~~~al~~al~l~d~~~i~~i~~~~-~d~~~~~Qla-f~larq~~~~~~~~~~~~~~~ 309 (872)
...+-.|.++-.++.+-|.+ +++.+++..+.+.+|+..++||+.+ +...--+|+| ...|.|++...+
T Consensus 298 ~~~e~~dee~~dil~Ng~ls--dhf~ylgkELnl~~PkvpedI~K~hl~~~k~~~~~agi~sA~qnla~~f--------- 366 (881)
T COG5110 298 LYYEASDEEEKDILSNGYLS--DHFRYLGKELNLDKPKVPEDILKGHLKYDKDTRQLAGIGSANQNLAMGF--------- 366 (881)
T ss_pred CCcccCCHHHHHHhcCCcHH--HHHHHHHHHhcCCCCCChHHHHHhhhhccccchhhcccchhhhHHHHhh---------
Confidence 88887777777777777554 7999999999999999999999994 5444456666 667777766654
Q ss_pred cHHHHHHHHcccCcchhHHHHHHHhhccCCCChHHHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccC-Cccccc
Q 002870 310 DRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDKLMT 388 (872)
Q Consensus 310 ~~~~l~~il~n~~l~~~~~~~~~~l~i~~~k~~~~iyK~~l~~~r~~~~~~~dsa~~~la~~~~nafvnaG~~-~D~~l~ 388 (872)
.+.++++..+.+-+-|..-+||||.... .+-||.++.+....| -+..|.. -|++++
T Consensus 367 --------------vn~~inlgy~nD~li~~dd~wiyk~k~~--------gliSa~aSIG~i~~W-N~d~gl~~Ldkyly 423 (881)
T COG5110 367 --------------VNDPINLGYENDSLIPLDDEWIYKCKVP--------GLISAFASIGVIESW-NSDKGLETLDKYLY 423 (881)
T ss_pred --------------hccccccCccCCeeeecchhhhhcCCCC--------Chhheeecchhhhhh-hhHhhHHHHHHHHh
Confidence 2335556667777777778999997643 344777777765544 3444533 455544
Q ss_pred cCCCCCCCCCCCccccccCchhHHHHHHHhhhhccccc---hhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhh
Q 002870 389 VPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDV---DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDP 465 (872)
Q Consensus 389 ~~~~~~~~~~~~~wl~k~~~~~k~~A~aslGlI~~~~~---~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~ 465 (872)
...++.|.+|..++|+...+.. ++++.+|.+|+.+++.-.+..|++|||+.++|..+|.
T Consensus 424 ----------------~de~~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~ee-- 485 (881)
T COG5110 424 ----------------ADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEE-- 485 (881)
T ss_pred ----------------cCcccccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHH--
Confidence 4445889999999999777654 4689999999999999999999999999999997664
Q ss_pred HHHHHHhhcCCCCHHHH--HHHHHHHHHHhccCCCHHHHHHHHHHhc-CC--CCchHHHHHHHHHHHhHhcCCCCHHHHH
Q 002870 466 ALALLSEYVGREDACIR--IGAIMGLGISYAGTQNDQIRHKLSTILN-DA--KSPLDVIAFSAISLGLIYVGSCNEEVAQ 540 (872)
Q Consensus 466 ~~~lL~~~L~~~~~~v~--~gA~lGLGLay~Gt~~~~i~e~L~~~L~-d~--~~~~e~~~~AaLALGLi~lGs~n~~~~e 540 (872)
++.+|++...+.+..++ .-|.+.||.+|+||||+|+...+++.+. .. +...++-++-+||||++|.|.++ .++
T Consensus 486 vl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d--~~d 563 (881)
T COG5110 486 VLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYGRKD--QVD 563 (881)
T ss_pred HHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHccccc--hhH
Confidence 99999999988776554 4689999999999999999999998875 22 34557888999999999999986 445
Q ss_pred HHHHHHhhcCccccCchhHhHHH-HHHHhhhcCChh--hHHHHHHHHhhhhhhhhh-----hhhHHHHHHhhhcCCCHH-
Q 002870 541 AIIFALMDRSESELGEPLTRLIP-LGLGLLYLGKQE--SVEATAEVSKTFNEKIRK-----YCDMTLLSCAYAGTGNVL- 611 (872)
Q Consensus 541 ~ll~~L~~~~~~~l~e~~~r~~~-lglgLl~~G~~e--~a~~ll~~L~~~~~~i~r-----~~~~~~~~lAyaGTGn~~- 611 (872)
+...+++.- ..++.+... +.-||-|.|+++ .++.++..+.+.+..-.+ --...++|||....|..-
T Consensus 564 ~v~eti~aI-----eg~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig 638 (881)
T COG5110 564 DVEETIMAI-----EGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIG 638 (881)
T ss_pred HHHHHHHHh-----cchhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhh
Confidence 555555431 223444433 334789999998 467777644332211111 112346889988888642
Q ss_pred ------HHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch
Q 002870 612 ------KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV 685 (872)
Q Consensus 612 ------~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~ 685 (872)
.+.+++||-.+ .+|++.++++|++..++|. ..+.+++++.+|++|-+|.+..++||||+.|||.|.
T Consensus 639 ~eMvlRhf~h~mhyg~~------hiR~~~PLa~gils~SnPQ--m~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT~Na 710 (881)
T COG5110 639 SEMVLRHFSHSMHYGSS------HIRSVLPLAYGILSPSNPQ--MNVFDTLERSSHDGDLNVIINTIFAMGLIGAGTLNA 710 (881)
T ss_pred HHHHHHHhhhHhhcCcH------HHHHHHHHHHhcccCCCcc--hHHHHHHHHhccccchhHHHHHHHHhhccccCcchH
Confidence 33356666554 5899999999999999994 779999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----cCCch-HHHHHHHHHHHHHcCCCC
Q 002870 686 NVMDTLSRLS----HDTDS-EVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 686 ~aid~L~~l~----~D~d~-~Vr~~AiiAlGlV~aGt~ 718 (872)
++..+|+++. ++++. +|- .||+|++..|.+
T Consensus 711 RlaqlLrQlaSYY~kes~aLfv~---riAQGLl~LGKG 745 (881)
T COG5110 711 RLAQLLRQLASYYYKESKALFVL---RIAQGLLSLGKG 745 (881)
T ss_pred HHHHHHHHHHHHHhhccchhhHH---HHHHHHHHhcCC
Confidence 9999998874 45543 333 389999998876
No 9
>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=316.76 Aligned_cols=410 Identities=20% Similarity=0.260 Sum_probs=294.5
Q ss_pred ccCchhHHHHHHHhhhhccccchh-hHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHH
Q 002870 405 KNKEHGKMSAAASLGMILLWDVDS-GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRI 483 (872)
Q Consensus 405 k~~~~~k~~A~aslGlI~~~~~~~-~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~ 483 (872)
.-++|+.|.+..|.|+-..---.+ --++|.-.-|.+.+..++|-++|||+- ||...- ..--+-.||...++.+.+
T Consensus 814 ~~teWp~FhngVa~GLrIsp~~~~Ids~WI~fnkp~~~~a~haGfl~glGLn--GhL~~L--~~~~i~qyls~~h~~tSv 889 (1496)
T KOG1858|consen 814 ELTEWPEFHNGVASGLRISPFATEIDSSWIVFNKPKELTAEHAGFLFGLGLN--GHLKAL--NTWHIYQYLSPKHEMTSV 889 (1496)
T ss_pred ccccchhhHHHHHhhcccCcccccccceeEEEecCCCcchheeheeeecccc--cccccc--cHHHHHHHccCCCcceeH
Confidence 446899999999998844321110 011222222456788899999999996 343221 111234678888899999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHhc--------CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCc----
Q 002870 484 GAIMGLGISYAGTQNDQIRHKLSTILN--------DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSE---- 551 (872)
Q Consensus 484 gA~lGLGLay~Gt~~~~i~e~L~~~L~--------d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~---- 551 (872)
|-++|++.+|.||++.++...|.-+|. +-+++.-++.+|.+|+||+|.||++..+.+.++..+.....
T Consensus 890 gLLlGlsaS~~GtmD~ki~Kllsvhl~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~~~~e~~ 969 (1496)
T KOG1858|consen 890 GLLLGLSASYRGTMDAKITKLLSVHLSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRPPNPENV 969 (1496)
T ss_pred HHHhhhhHhhcCccchhHHHHHHHHHhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCCCCcccc
Confidence 999999999999999999888876663 11233445778999999999999999999999988764322
Q ss_pred cccCchhHhHHHHHHHhhhcCChhhHH---------HHHHHHh-------------------------hhhhhhhhhhhH
Q 002870 552 SELGEPLTRLIPLGLGLLYLGKQESVE---------ATAEVSK-------------------------TFNEKIRKYCDM 597 (872)
Q Consensus 552 ~~l~e~~~r~~~lglgLl~~G~~e~a~---------~ll~~L~-------------------------~~~~~i~r~~~~ 597 (872)
++ +|.+.+++++++||+++|+++... .+..-+. ..+-.+..+|++
T Consensus 970 ~~-rE~Y~laAG~SLGLi~LG~G~~~~g~~d~~~~~~l~~ym~~g~~r~~~~~~~~~~~~~~q~~eg~t~~~dv~~pGAv 1048 (1496)
T KOG1858|consen 970 LE-REGYKLAAGFSLGLINLGRGSNLPGMSDLKLVSRLLVYMVGGVRRPIDVPQNEKYRSSTQILEGSTSNLDVTAPGAV 1048 (1496)
T ss_pred hh-hhhhhhhcCcccceeeeccCCCCcchhcccchHHHHHHhhccccccccccccccccchhhhccCceeeeecCCccHH
Confidence 13 678999999999999999986432 2222222 001134467999
Q ss_pred HHHHHhhhcCCCHHHHHHH----HHhhcccCCCCccchhhhHhHhhhhhhcch-----hhHhHHHHHHHHHhhc------
Q 002870 598 TLLSCAYAGTGNVLKVQNL----LGHCAQHHEKGEAYQGPAVLGIAMVAMAEE-----LGLEMAIRSLEHLLQY------ 662 (872)
Q Consensus 598 ~~~~lAyaGTGn~~~i~~L----L~~~~~~~~d~~~vrr~Avl~iglI~~~~~-----~g~e~~~~il~~L~~~------ 662 (872)
+|+++.|..|+|..+...| -+|.-+-+.+ +.--..++|..+|+|.+- +-..++|+++..-..+
T Consensus 1049 iAl~mmflktnn~~Ia~~l~~p~t~yll~~vrP--d~l~lR~~a~~lImW~~I~p~~~wv~~~vp~~ir~~~~~~~dvd~ 1126 (1496)
T KOG1858|consen 1049 IALGMMFLKTNNFEIANALRPPDTRYLLDFVRP--DFLLLRVIARNLIMWDRIKPDYDWVKSQVPDVIREQADLQEDVDL 1126 (1496)
T ss_pred HHHHHHHHHhchHHHHhhcCCCchhhHHhhcch--HHHHHHHHHhhhhHHHhhCchHHHHHhhCCHHHHHhhhhhhhhhh
Confidence 9999999999997665532 1111111111 444578999999999863 1234555554321111
Q ss_pred -----CChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCC-----------c----h----HHHHHHHHHHHHHcCCCC
Q 002870 663 -----GEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT-----------D----S----EVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 663 -----~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~-----------d----~----~Vr~~AiiAlGlV~aGt~ 718 (872)
--.++-.|+|||+||.+|||+|.++.++|..+..|- + . .+-+--|+++++|+||++
T Consensus 1127 ~tl~q~~~~~~aGac~slgLrfagt~n~~aknil~s~v~~fl~l~~~P~~~~~~~~~~~tv~~cl~v~i~sls~vmagSg 1206 (1496)
T KOG1858|consen 1127 ETLSQAYVNILAGACFSLGLRFAGTGNLKAKNILNSFVDDFLRLCSLPLKSNDGRVTAVTVERCLSVLIISLSMVMAGSG 1206 (1496)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHhhccCccCCCcccchhHHHHHHHHHHHHHHHHhhcC
Confidence 014789999999999999999999999998775331 1 1 122346899999999999
Q ss_pred chHHHHHHHHhhhhhc----cChhhHHHHHHHHhhhhcCCCceeecccCCCCCCCChHHHHHHHHHHHhhccccccccCc
Q 002870 719 NARIAGMLRNLSSYYY----KDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGK 794 (872)
Q Consensus 719 n~rv~~~lr~l~s~~~----~d~~~~f~~~lAqGll~~G~g~~tlsp~~sd~~~~~~~a~agLl~~l~~~~d~~~~i~~~ 794 (872)
|.+|.+.+|.|++..+ .+-..++++++|.||+++|+|++|+|. ++.++|.+++.+|+-++ .++.+++
T Consensus 1207 dleVlr~~r~Lr~~~~~~~~~~yg~~ma~h~alGil~lG~Gr~t~s~--------s~~sIa~ll~slfp~fP-~~~~Dnr 1277 (1496)
T KOG1858|consen 1207 DLEVLRRLRFLRSRTSPYGHMNYGAQMATHMALGILFLGGGRYTIST--------SNLSIAALLISLFPHFP-ISPSDNR 1277 (1496)
T ss_pred chHHHHHHHHHHHhccCCCcccchhHHHHHHhhceeEecCcccccCC--------CcHHHHHHHHHhCCCCC-CCCcccH
Confidence 9998888888887654 233478999999999999999999998 46899999999999874 4566888
Q ss_pred hhH--HHHHHhhhcccceeeeecCCCC-ccceeeeeccc
Q 002870 795 YHY--VLYFLVLAMQPRMLLTVDENLK-PLSVPVRVGQA 830 (872)
Q Consensus 795 ~h~--l~~~l~lA~~Pr~li~ld~~l~-~~~v~vrvgqa 830 (872)
||. ++|+|++|++||+++++|-|.+ |.-+++.|++.
T Consensus 1278 ~hlqalR~l~~La~e~r~lip~didt~~~~l~~~~v~~k 1316 (1496)
T KOG1858|consen 1278 YHLQALRHLYVLAVEPRLLIPRDIDTGQPCLAPLNVVQK 1316 (1496)
T ss_pred HHHHHHHHHHHHhcccccccccccccCceEEEeeeEEec
Confidence 885 9999999999999999997765 44677777543
No 10
>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6.2e-13 Score=163.60 Aligned_cols=175 Identities=21% Similarity=0.328 Sum_probs=130.9
Q ss_pred CCCccccccCchhHHHH---HHHhhhhccccchh-hHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhh
Q 002870 398 SSGNWLFKNKEHGKMSA---AASLGMILLWDVDS-GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEY 473 (872)
Q Consensus 398 ~~~~wl~k~~~~~k~~A---~aslGlI~~~~~~~-~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~ 473 (872)
.+.+||.-||.- +..| .--+|+-..||... ..-.+..||...++.+..|.|+|++..|-|+++. ++..+|+-|
T Consensus 838 Ids~WI~fnkp~-~~~a~haGfl~glGLnGhL~~L~~~~i~qyls~~h~~tSvgLLlGlsaS~~GtmD~--ki~Kllsvh 914 (1496)
T KOG1858|consen 838 IDSSWIVFNKPK-ELTAEHAGFLFGLGLNGHLKALNTWHIYQYLSPKHEMTSVGLLLGLSASYRGTMDA--KITKLLSVH 914 (1496)
T ss_pred ccceeEEEecCC-CcchheeheeeecccccccccccHHHHHHHccCCCcceeHHHHhhhhHhhcCccch--hHHHHHHHH
Confidence 577899888754 2222 22255555777764 2345778899999999999999999999999865 589999999
Q ss_pred cCCC----------CHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCC-CC-----chHHHHHHHHHHHhHhcCCCCH-
Q 002870 474 VGRE----------DACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDA-KS-----PLDVIAFSAISLGLIYVGSCNE- 536 (872)
Q Consensus 474 L~~~----------~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~-~~-----~~e~~~~AaLALGLi~lGs~n~- 536 (872)
|..- +..+|.+|++|+|+.|+||++..+.+.|+..+... .. .-.+..+|+++||||++|.|+.
T Consensus 915 l~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~~~~e~~~~rE~Y~laAG~SLGLi~LG~G~~~ 994 (1496)
T KOG1858|consen 915 LSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRPPNPENVLEREGYKLAAGFSLGLINLGRGSNL 994 (1496)
T ss_pred HhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCCCCcccchhhhhhhhhcCcccceeeeccCCCC
Confidence 8641 36899999999999999999999999999888522 11 1236789999999999999964
Q ss_pred ------HHHHHHHHHHhhcC--------------cccc-------CchhHhHHHHHHHhhhcCChh
Q 002870 537 ------EVAQAIIFALMDRS--------------ESEL-------GEPLTRLIPLGLGLLYLGKQE 575 (872)
Q Consensus 537 ------~~~e~ll~~L~~~~--------------~~~l-------~e~~~r~~~lglgLl~~G~~e 575 (872)
...+.++.+|++.. .+|+ -+.-+.+++++++++|+.+++
T Consensus 995 ~g~~d~~~~~~l~~ym~~g~~r~~~~~~~~~~~~~~q~~eg~t~~~dv~~pGAviAl~mmflktnn 1060 (1496)
T KOG1858|consen 995 PGMSDLKLVSRLLVYMVGGVRRPIDVPQNEKYRSSTQILEGSTSNLDVTAPGAVIALGMMFLKTNN 1060 (1496)
T ss_pred cchhcccchHHHHHHhhccccccccccccccccchhhhccCceeeeecCCccHHHHHHHHHHHhch
Confidence 45678888887210 0000 112345899999999998775
No 11
>PRK09687 putative lyase; Provisional
Probab=99.19 E-value=5.5e-09 Score=114.04 Aligned_cols=246 Identities=13% Similarity=0.096 Sum_probs=139.6
Q ss_pred HHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC---CHHHHHHHH
Q 002870 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ---NDQIRHKLS 506 (872)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~---~~~i~e~L~ 506 (872)
...|.++|.+.+..++..|+.+|+.+.. +.++..+...+.++++.+|..|+-+||-. |.. ..++...|.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~------~~~~~~l~~ll~~~d~~vR~~A~~aLg~l--g~~~~~~~~a~~~L~ 96 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG------QDVFRLAIELCSSKNPIERDIGADILSQL--GMAKRCQDNVFNILN 96 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc------chHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCccchHHHHHHHH
Confidence 4456677788888899999999887642 12677777777888889999999888874 432 246777777
Q ss_pred HHh-cCCCCchHHHHHHHHHHHhHhcCCC--CHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHH
Q 002870 507 TIL-NDAKSPLDVIAFSAISLGLIYVGSC--NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEV 583 (872)
Q Consensus 507 ~~L-~d~~~~~e~~~~AaLALGLi~lGs~--n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~ 583 (872)
..+ .|+ ..++...|+-+||-+.-+.. ..++.+.+...+.+ .+..+|+.+ +.+|..+|.++.++.++..
T Consensus 97 ~l~~~D~--d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D------~~~~VR~~a-~~aLg~~~~~~ai~~L~~~ 167 (280)
T PRK09687 97 NLALEDK--SACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD------KSTNVRFAV-AFALSVINDEAAIPLLINL 167 (280)
T ss_pred HHHhcCC--CHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC------CCHHHHHHH-HHHHhccCCHHHHHHHHHH
Confidence 764 454 45666778888887622111 12334444333211 122333322 2234455666666666665
Q ss_pred HhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcC
Q 002870 584 SKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYG 663 (872)
Q Consensus 584 L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~ 663 (872)
+. ++++..|+.++.++|-. +.++..++..|.+...+ .++ +||..|+.|+|-+ +++ .-++.++.. ++++
T Consensus 168 L~-d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D-~~~--~VR~~A~~aLg~~--~~~---~av~~Li~~-L~~~ 235 (280)
T PRK09687 168 LK-DPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQD-KNE--EIRIEAIIGLALR--KDK---RVLSVLIKE-LKKG 235 (280)
T ss_pred hc-CCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcC-CCh--HHHHHHHHHHHcc--CCh---hHHHHHHHH-HcCC
Confidence 54 34555666555544422 44555555555555532 222 5666666666653 333 333333333 3332
Q ss_pred ChhHHhHHHHHHhhhccCCCchHHHHHHHHhhc-CCchHHHHHHHHHH
Q 002870 664 EQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH-DTDSEVAMAAVISL 710 (872)
Q Consensus 664 ~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~-D~d~~Vr~~AiiAl 710 (872)
.+|..++-|||-+ |.++++..|.++.+ ++|..|++-|+-++
T Consensus 236 --~~~~~a~~ALg~i----g~~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 236 --TVGDLIIEAAGEL----GDKTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred --chHHHHHHHHHhc----CCHhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 2555666666655 44566666666654 55666666555443
No 12
>PRK09687 putative lyase; Provisional
Probab=99.14 E-value=9.2e-09 Score=112.33 Aligned_cols=243 Identities=14% Similarity=0.097 Sum_probs=169.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCC---HHHHHHH
Q 002870 466 ALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN---EEVAQAI 542 (872)
Q Consensus 466 ~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n---~~~~e~l 542 (872)
....|.++|.+++..+|..|+.+|+.. | .+++...+...+.|+ +..+..+|+-+||.+ |... .++...|
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~--~--~~~~~~~l~~ll~~~--d~~vR~~A~~aLg~l--g~~~~~~~~a~~~L 95 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLR--G--GQDVFRLAIELCSSK--NPIERDIGADILSQL--GMAKRCQDNVFNIL 95 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhc--C--cchHHHHHHHHHhCC--CHHHHHHHHHHHHhc--CCCccchHHHHHHH
Confidence 345677888999999999999999863 3 578999999887765 456677899999996 4322 3455555
Q ss_pred HHHHhhcCccccCchhHh-HHHHHHHhhhcCChhh------HHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHH
Q 002870 543 IFALMDRSESELGEPLTR-LIPLGLGLLYLGKQES------VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQN 615 (872)
Q Consensus 543 l~~L~~~~~~~l~e~~~r-~~~lglgLl~~G~~e~------a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~ 615 (872)
...+.+. .+..+| .++-+|| ++|.+.. ++.+. .+..++++..|++++.++| ..|+..++..
T Consensus 96 ~~l~~~D-----~d~~VR~~A~~aLG--~~~~~~~~~~~~a~~~l~-~~~~D~~~~VR~~a~~aLg----~~~~~~ai~~ 163 (280)
T PRK09687 96 NNLALED-----KSACVRASAINATG--HRCKKNPLYSPKIVEQSQ-ITAFDKSTNVRFAVAFALS----VINDEAAIPL 163 (280)
T ss_pred HHHHhcC-----CCHHHHHHHHHHHh--cccccccccchHHHHHHH-HHhhCCCHHHHHHHHHHHh----ccCCHHHHHH
Confidence 5443221 344556 4444444 4454332 22222 3334557888988777664 5578899999
Q ss_pred HHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhh
Q 002870 616 LLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLS 695 (872)
Q Consensus 616 LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~ 695 (872)
|+....+. +. +||..|+.++|-+..++| .+...+..++.+.|+.||.++..+||-+ ++.++++.|.+..
T Consensus 164 L~~~L~d~-~~--~VR~~A~~aLg~~~~~~~----~~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~~~av~~Li~~L 232 (280)
T PRK09687 164 LINLLKDP-NG--DVRNWAAFALNSNKYDNP----DIREAFVAMLQDKNEEIRIEAIIGLALR----KDKRVLSVLIKEL 232 (280)
T ss_pred HHHHhcCC-CH--HHHHHHHHHHhcCCCCCH----HHHHHHHHHhcCCChHHHHHHHHHHHcc----CChhHHHHHHHHH
Confidence 99988643 33 899999999999955554 4555566666888999999999999986 7789999999999
Q ss_pred cCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhhccChhhHHHHHHH
Q 002870 696 HDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIA 746 (872)
Q Consensus 696 ~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~s~~~~d~~~~f~~~lA 746 (872)
.|++ |+..|+.|+|-++- ++....|.++... ..|+.++.-++-|
T Consensus 233 ~~~~--~~~~a~~ALg~ig~----~~a~p~L~~l~~~-~~d~~v~~~a~~a 276 (280)
T PRK09687 233 KKGT--VGDLIIEAAGELGD----KTLLPVLDTLLYK-FDDNEIITKAIDK 276 (280)
T ss_pred cCCc--hHHHHHHHHHhcCC----HhHHHHHHHHHhh-CCChhHHHHHHHH
Confidence 9876 78889999998844 3555566665542 2366555555443
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.05 E-value=6.2e-08 Score=121.60 Aligned_cols=288 Identities=16% Similarity=0.079 Sum_probs=200.3
Q ss_pred CchhHHHHHHHhhhhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHH
Q 002870 407 KEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAI 486 (872)
Q Consensus 407 ~~~~k~~A~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~ 486 (872)
..|.++.++.+|+ .+.+..|..+|.++++.+|..|+.+||-+.. + .++..|...|.+++..+|..|+
T Consensus 607 ~~~~~~~~~~~l~-------~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----~--~~~~~L~~aL~D~d~~VR~~Aa 673 (897)
T PRK13800 607 PPSPRILAVLALD-------APSVAELAPYLADPDPGVRRTAVAVLTETTP----P--GFGPALVAALGDGAAAVRRAAA 673 (897)
T ss_pred CchHHHHHHHhcc-------chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc----h--hHHHHHHHHHcCCCHHHHHHHH
Confidence 4578887777772 3356778889999999999999999997642 2 2778888999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHH-HHH
Q 002870 487 MGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLI-PLG 565 (872)
Q Consensus 487 lGLGLay~Gt~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~-~lg 565 (872)
-+|+-+.-.... ...|...|.++ +.++...|+-+||.+- .++. ..+++.|. . .+...|.. +-+
T Consensus 674 ~aL~~l~~~~~~---~~~L~~~L~~~--d~~VR~~A~~aL~~~~--~~~~---~~l~~~L~-D-----~d~~VR~~Av~a 737 (897)
T PRK13800 674 EGLRELVEVLPP---APALRDHLGSP--DPVVRAAALDVLRALR--AGDA---ALFAAALG-D-----PDHRVRIEAVRA 737 (897)
T ss_pred HHHHHHHhccCc---hHHHHHHhcCC--CHHHHHHHHHHHHhhc--cCCH---HHHHHHhc-C-----CCHHHHHHHHHH
Confidence 998765211111 24555666654 4577778888888864 3332 34555442 1 23455543 344
Q ss_pred HHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcc
Q 002870 566 LGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAE 645 (872)
Q Consensus 566 lgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~ 645 (872)
|+ .++.. +.++ .+..++++..|..++ .+++..|++....+..|++.+.+. + +.||..|+-+||-+. .
T Consensus 738 L~--~~~~~---~~l~-~~l~D~~~~VR~~aa--~aL~~~~~~~~~~~~~L~~ll~D~-d--~~VR~aA~~aLg~~g--~ 804 (897)
T PRK13800 738 LV--SVDDV---ESVA-GAATDENREVRIAVA--KGLATLGAGGAPAGDAVRALTGDP-D--PLVRAAALAALAELG--C 804 (897)
T ss_pred Hh--cccCc---HHHH-HHhcCCCHHHHHHHH--HHHHHhccccchhHHHHHHHhcCC-C--HHHHHHHHHHHHhcC--C
Confidence 44 44443 3444 345667788887655 466777887776677777776543 3 389999999998874 3
Q ss_pred hhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHH
Q 002870 646 ELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGM 725 (872)
Q Consensus 646 ~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~ 725 (872)
+ +.+...+...+.+.++.||.+++-|||.+ +..++++.|.++..|++..||+.|+.+||-+ ..++.....
T Consensus 805 ~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~~~~a~~~ 874 (897)
T PRK13800 805 P---PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDPHLDVRKAAVLALTRW---PGDPAARDA 874 (897)
T ss_pred c---chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCCCHHHHHHHHHHHhcc---CCCHHHHHH
Confidence 3 33334455556778899999999999987 6678999999999999999999999999986 235556666
Q ss_pred HHHhhhhhccChhhHHHHHHHHh
Q 002870 726 LRNLSSYYYKDANLLFCVRIAQG 748 (872)
Q Consensus 726 lr~l~s~~~~d~~~~f~~~lAqG 748 (872)
|.+..+ ..|+.++=.+..|++
T Consensus 875 L~~al~--D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 875 LTTALT--DSDADVRAYARRALA 895 (897)
T ss_pred HHHHHh--CCCHHHHHHHHHHHh
Confidence 665544 467777766666653
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.78 E-value=5.8e-07 Score=113.00 Aligned_cols=262 Identities=18% Similarity=0.118 Sum_probs=182.4
Q ss_pred ccccCchhHHHHHHHhhhhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHH
Q 002870 403 LFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIR 482 (872)
Q Consensus 403 l~k~~~~~k~~A~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~ 482 (872)
+.......+..|+.+||-+.. .+++..|...|.+++..+|..|+.+|+-+.... +....|...|.++++.+|
T Consensus 630 L~D~d~~VR~~Av~~L~~~~~---~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-----~~~~~L~~~L~~~d~~VR 701 (897)
T PRK13800 630 LADPDPGVRRTAVAVLTETTP---PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-----PPAPALRDHLGSPDPVVR 701 (897)
T ss_pred hcCCCHHHHHHHHHHHhhhcc---hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----CchHHHHHHhcCCCHHHH
Confidence 334456789999999987642 345677778888889999999999998773211 122355677888899999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHh-H
Q 002870 483 IGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTR-L 561 (872)
Q Consensus 483 ~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r-~ 561 (872)
..|+-.||....+. . ..|...+.|+ +.++...|+-+||-+ +. . +.++..+. + .+..+| .
T Consensus 702 ~~A~~aL~~~~~~~--~---~~l~~~L~D~--d~~VR~~Av~aL~~~--~~--~---~~l~~~l~--D----~~~~VR~~ 761 (897)
T PRK13800 702 AAALDVLRALRAGD--A---ALFAAALGDP--DHRVRIEAVRALVSV--DD--V---ESVAGAAT--D----ENREVRIA 761 (897)
T ss_pred HHHHHHHHhhccCC--H---HHHHHHhcCC--CHHHHHHHHHHHhcc--cC--c---HHHHHHhc--C----CCHHHHHH
Confidence 99999999864432 2 3556677776 456777899999975 32 2 34444331 1 233444 4
Q ss_pred HHHHHHhhhcCChhh--HHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHH-HHHHHHHhhcccCCCCccchhhhHhHh
Q 002870 562 IPLGLGLLYLGKQES--VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL-KVQNLLGHCAQHHEKGEAYQGPAVLGI 638 (872)
Q Consensus 562 ~~lglgLl~~G~~e~--a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~-~i~~LL~~~~~~~~d~~~vrr~Avl~i 638 (872)
++- +|..+|.++. .+.+. .+..+++|..|..++.+++ -. |+.. .+..+++.+.+ .+. .||+.|+-+|
T Consensus 762 aa~--aL~~~~~~~~~~~~~L~-~ll~D~d~~VR~aA~~aLg--~~--g~~~~~~~~l~~aL~d-~d~--~VR~~Aa~aL 831 (897)
T PRK13800 762 VAK--GLATLGAGGAPAGDAVR-ALTGDPDPLVRAAALAALA--EL--GCPPDDVAAATAALRA-SAW--QVRQGAARAL 831 (897)
T ss_pred HHH--HHHHhccccchhHHHHH-HHhcCCCHHHHHHHHHHHH--hc--CCcchhHHHHHHHhcC-CCh--HHHHHHHHHH
Confidence 444 4555565553 45555 5556678999987776544 33 4333 34556666643 232 7999999999
Q ss_pred hhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHH
Q 002870 639 AMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLG 711 (872)
Q Consensus 639 glI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlG 711 (872)
+.+. . +.+...+..++.+.++.||..++.|||-+ .+++++.+.|.+..+|.|.+||+.|+.||.
T Consensus 832 ~~l~--~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 832 AGAA--A----DVAVPALVEALTDPHLDVRKAAVLALTRW---PGDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred Hhcc--c----cchHHHHHHHhcCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9863 2 34556677777889999999999999986 357789999999999999999999999886
No 15
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.26 E-value=7.2e-05 Score=85.98 Aligned_cols=211 Identities=15% Similarity=0.110 Sum_probs=131.1
Q ss_pred HHHHHHhhcC-CCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHH
Q 002870 466 ALALLSEYVG-REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIF 544 (872)
Q Consensus 466 ~~~lL~~~L~-~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~ 544 (872)
+...|...|. +++.-++..++++|+- ..+..+.+.|...+.|. +..+...++-|||.+ ++.++...++.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~----~~~~~~~~~L~~~L~d~--~~~vr~aaa~ALg~i----~~~~a~~~L~~ 124 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLA----QEDALDLRSVLAVLQAG--PEGLCAGIQAALGWL----GGRQAEPWLEP 124 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc----cCChHHHHHHHHHhcCC--CHHHHHHHHHHHhcC----CchHHHHHHHH
Confidence 6777777773 4556666667766652 23445688888888765 334667888888877 66777777777
Q ss_pred HHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccC
Q 002870 545 ALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHH 624 (872)
Q Consensus 545 ~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~ 624 (872)
.|- + .++..|.+++ +.+-..+.+..+.++..|. +.+|..|..++-++ ++.|.. ..+..|.... .+.
T Consensus 125 ~L~--~----~~p~vR~aal--~al~~r~~~~~~~L~~~L~-d~d~~Vra~A~raL--G~l~~~--~a~~~L~~al-~d~ 190 (410)
T TIGR02270 125 LLA--A----SEPPGRAIGL--AALGAHRHDPGPALEAALT-HEDALVRAAALRAL--GELPRR--LSESTLRLYL-RDS 190 (410)
T ss_pred Hhc--C----CChHHHHHHH--HHHHhhccChHHHHHHHhc-CCCHHHHHHHHHHH--Hhhccc--cchHHHHHHH-cCC
Confidence 652 1 3456666554 2222233445566666655 66777777666554 444443 4444555443 333
Q ss_pred CCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHH
Q 002870 625 EKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAM 704 (872)
Q Consensus 625 ~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~ 704 (872)
++ .||++|+-+++.+ |.+ .+...+..+.....+..+.....++++. +..++++.|..+++|+. |+.
T Consensus 191 ~~--~VR~aA~~al~~l--G~~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~~~a~~~L~~ll~d~~--vr~ 256 (410)
T TIGR02270 191 DP--EVRFAALEAGLLA--GSR----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GGPDAQAWLRELLQAAA--TRR 256 (410)
T ss_pred CH--HHHHHHHHHHHHc--CCH----hHHHHHHHHHhccCccHHHHHHHHHHhC----CchhHHHHHHHHhcChh--hHH
Confidence 33 7898998888776 443 3334444432333445555555555554 66688999999988866 888
Q ss_pred HHHHHHHHHc
Q 002870 705 AAVISLGLIG 714 (872)
Q Consensus 705 ~AiiAlGlV~ 714 (872)
.++.++|.++
T Consensus 257 ~a~~AlG~lg 266 (410)
T TIGR02270 257 EALRAVGLVG 266 (410)
T ss_pred HHHHHHHHcC
Confidence 9999999774
No 16
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.25 E-value=9.2e-05 Score=85.10 Aligned_cols=220 Identities=17% Similarity=0.099 Sum_probs=148.3
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHH
Q 002870 486 IMGLGISYAGTQNDQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPL 564 (872)
Q Consensus 486 ~lGLGLay~Gt~~~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~l 564 (872)
+=||.. +| +...+.|.+.+. |. ..++...++++++. ..+..+++.++..|-+. .+...+.++-
T Consensus 45 LdgL~~--~G---~~a~~~L~~aL~~d~--~~ev~~~aa~al~~----~~~~~~~~~L~~~L~d~-----~~~vr~aaa~ 108 (410)
T TIGR02270 45 VDGLVL--AG---KAATELLVSALAEAD--EPGRVACAALALLA----QEDALDLRSVLAVLQAG-----PEGLCAGIQA 108 (410)
T ss_pred HHHHHH--hh---HhHHHHHHHHHhhCC--ChhHHHHHHHHHhc----cCChHHHHHHHHHhcCC-----CHHHHHHHHH
Confidence 455554 45 578899999995 43 35665556666542 24455688888876321 2335555544
Q ss_pred HHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhc
Q 002870 565 GLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMA 644 (872)
Q Consensus 565 glgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~ 644 (872)
+|..+|.+.....++..+ ..++|..|.++.- +|+.-+-. ....++..+. |.+. .||+.|+-++|.+.-.
T Consensus 109 --ALg~i~~~~a~~~L~~~L-~~~~p~vR~aal~--al~~r~~~---~~~~L~~~L~-d~d~--~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 109 --ALGWLGGRQAEPWLEPLL-AASEPPGRAIGLA--ALGAHRHD---PGPALEAALT-HEDA--LVRAAALRALGELPRR 177 (410)
T ss_pred --HHhcCCchHHHHHHHHHh-cCCChHHHHHHHH--HHHhhccC---hHHHHHHHhc-CCCH--HHHHHHHHHHHhhccc
Confidence 455778888888888777 4568888887664 44444422 2334555543 3333 8999999999997533
Q ss_pred chhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHH
Q 002870 645 EELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAG 724 (872)
Q Consensus 645 ~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~ 724 (872)
+-++ .+....++.||.||+++.-+++.+ |...+.+.|..+..+++..+++.+..++++. | .+++..
T Consensus 178 -----~a~~-~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~g~~~~~~l~~~lal~--~--~~~a~~ 243 (410)
T TIGR02270 178 -----LSES-TLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLEGGPHRQRLLVLLAVA--G--GPDAQA 243 (410)
T ss_pred -----cchH-HHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhccCccHHHHHHHHHHhC--C--chhHHH
Confidence 2233 344667889999999999999988 5578999999988888888876666655554 3 347777
Q ss_pred HHHHhhhhhccChhhHHHHHHHHhhh
Q 002870 725 MLRNLSSYYYKDANLLFCVRIAQGLV 750 (872)
Q Consensus 725 ~lr~l~s~~~~d~~~~f~~~lAqGll 750 (872)
.|+++.. ++.++..+..|.|.+
T Consensus 244 ~L~~ll~----d~~vr~~a~~AlG~l 265 (410)
T TIGR02270 244 WLRELLQ----AAATRREALRAVGLV 265 (410)
T ss_pred HHHHHhc----ChhhHHHHHHHHHHc
Confidence 7777654 566888999998854
No 17
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.19 E-value=0.00037 Score=77.77 Aligned_cols=215 Identities=20% Similarity=0.220 Sum_probs=133.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHH
Q 002870 466 ALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFA 545 (872)
Q Consensus 466 ~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~ 545 (872)
....+...+.+++..+|+.|...+|. ...++.+..|...+.|.+ ..+...|+.+||-+ ++++.+..++..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~----~~~~~av~~l~~~l~d~~--~~vr~~a~~aLg~~----~~~~a~~~li~~ 113 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGE----LGSEEAVPLLRELLSDED--PRVRDAAADALGEL----GDPEAVPPLVEL 113 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhh----hchHHHHHHHHHHhcCCC--HHHHHHHHHHHHcc----CChhHHHHHHHH
Confidence 34445555556666667666666554 234566666666666542 24455666666655 566666666665
Q ss_pred HhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhh---------hh--hhhhhhHHHHHHhhhcCCCHHHHH
Q 002870 546 LMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFN---------EK--IRKYCDMTLLSCAYAGTGNVLKVQ 614 (872)
Q Consensus 546 L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~---------~~--i~r~~~~~~~~lAyaGTGn~~~i~ 614 (872)
+.. + .+..+|..+ +.+|..+|.+..++.+++.+.... .+ ..|..++. +....|+...+.
T Consensus 114 l~~----d-~~~~vR~~a-a~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~----~l~~~~~~~~~~ 183 (335)
T COG1413 114 LEN----D-ENEGVRAAA-ARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE----ALGELGDPEAIP 183 (335)
T ss_pred HHc----C-CcHhHHHHH-HHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH----HHHHcCChhhhH
Confidence 532 1 223333322 334555566666666666665533 11 12332222 233457777777
Q ss_pred HHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHh
Q 002870 615 NLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL 694 (872)
Q Consensus 615 ~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l 694 (872)
.+...+..... +||+.|..+++.+.... ..+...|....++.+..+|..++.++|-. +..++.+.|-..
T Consensus 184 ~l~~~l~~~~~---~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~ 252 (335)
T COG1413 184 LLIELLEDEDA---DVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGEI----GDEEAVDALAKA 252 (335)
T ss_pred HHHHHHhCchH---HHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhccc----CcchhHHHHHHH
Confidence 77766654332 68888888888886554 23455566666778888999999999888 778888888888
Q ss_pred hcCCchHHHHHHHHHHH
Q 002870 695 SHDTDSEVAMAAVISLG 711 (872)
Q Consensus 695 ~~D~d~~Vr~~AiiAlG 711 (872)
..+.+..++..+..+++
T Consensus 253 l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 253 LEDEDVILALLAAAALG 269 (335)
T ss_pred HhccchHHHHHHHHHhc
Confidence 88888888877777776
No 18
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.89 E-value=0.0011 Score=74.05 Aligned_cols=219 Identities=25% Similarity=0.262 Sum_probs=153.4
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHH
Q 002870 499 DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 578 (872)
Q Consensus 499 ~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~ 578 (872)
+...+.+...+.+. +..+...|+..+|.+ ++.+++..+...+.+ .++..|..+. .+|.-+|.++.++
T Consensus 42 ~~~~~~~~~~l~~~--~~~vr~~aa~~l~~~----~~~~av~~l~~~l~d------~~~~vr~~a~-~aLg~~~~~~a~~ 108 (335)
T COG1413 42 PEAADELLKLLEDE--DLLVRLSAAVALGEL----GSEEAVPLLRELLSD------EDPRVRDAAA-DALGELGDPEAVP 108 (335)
T ss_pred hhhHHHHHHHHcCC--CHHHHHHHHHHHhhh----chHHHHHHHHHHhcC------CCHHHHHHHH-HHHHccCChhHHH
Confidence 45566666677665 445566788888877 778888888887632 2234444332 2777888999999
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCC-------CC--ccchhhhHhHhhhhhhcchhhH
Q 002870 579 ATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHE-------KG--EAYQGPAVLGIAMVAMAEELGL 649 (872)
Q Consensus 579 ~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~-------d~--~~vrr~Avl~iglI~~~~~~g~ 649 (872)
.+++.+..+++...|..+..++ .+.|+..++..++....+..+ +. ..+|..++-+++.+ +++
T Consensus 109 ~li~~l~~d~~~~vR~~aa~aL----~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~--~~~--- 179 (335)
T COG1413 109 PLVELLENDENEGVRAAAARAL----GKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL--GDP--- 179 (335)
T ss_pred HHHHHHHcCCcHhHHHHHHHHH----HhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc--CCh---
Confidence 9999999877788887666543 467888888889888765431 10 13566676666664 554
Q ss_pred hHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHh
Q 002870 650 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNL 729 (872)
Q Consensus 650 e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l 729 (872)
+..+-++.. +.+.+..||+.++.+||.+...+ ..+.+.+.+..+|.+..||..++.++|-++......-+...++.
T Consensus 180 ~~~~~l~~~-l~~~~~~vr~~Aa~aL~~~~~~~--~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~l~~~l~~- 255 (335)
T COG1413 180 EAIPLLIEL-LEDEDADVRRAAASALGQLGSEN--VEAADLLVKALSDESLEVRKAALLALGEIGDEEAVDALAKALED- 255 (335)
T ss_pred hhhHHHHHH-HhCchHHHHHHHHHHHHHhhcch--hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhHHHHHHHHhc-
Confidence 444444444 45567799999999999886544 57778999999999999999999999999888766555555554
Q ss_pred hhhhccChhhHHHHHHHHh
Q 002870 730 SSYYYKDANLLFCVRIAQG 748 (872)
Q Consensus 730 ~s~~~~d~~~~f~~~lAqG 748 (872)
.++........+.|
T Consensus 256 -----~~~~~~~~~~~~~~ 269 (335)
T COG1413 256 -----EDVILALLAAAALG 269 (335)
T ss_pred -----cchHHHHHHHHHhc
Confidence 34444555555554
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.14 Score=64.28 Aligned_cols=150 Identities=17% Similarity=0.244 Sum_probs=96.8
Q ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCcchHHHHHHHHHHHhhhc
Q 002870 46 QQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTM 125 (872)
Q Consensus 46 ~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~ 125 (872)
..|+.|+..|..+|.++++.|=+.|.++-++.. -.+.|..+-....+++.|+++|=.+-++..++
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~ 68 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTEP---------------LLPALAHILATSADPQVRQLAAVLLRKLLTKH 68 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc---------------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999998888773 24577777777888888888888888887442
Q ss_pred cCcccccchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhccCccCH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHhc
Q 002870 126 SAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASI-DDLMELVQEIVAFHMKHNAEPEAVDLLMEV 204 (872)
Q Consensus 126 ~~~~~~~~L~y~L~~~~~d~~~wgheYvr~L~~ei~~~y~~~~~~~~~~-~~L~~lv~~iv~~~l~~n~e~eAvdlalE~ 204 (872)
. + .+. .|=-.+|-+.+.+..+. +.+..+ ..+.+++.++...-+-. .++|-+-++..+
T Consensus 69 w----------~------~l~---~e~~~siks~lL~~~~~--E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~ 126 (1075)
T KOG2171|consen 69 W----------S------RLS---AEVQQSIKSSLLEIIQS--ETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQS 126 (1075)
T ss_pred h----------h------cCC---HHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHH
Confidence 1 0 011 12222333344333332 222334 47788888888877755 777777766543
Q ss_pred CChhhhHHHhhccchHHHHHHHHhhcccCCCCChH
Q 002870 205 EDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDM 239 (872)
Q Consensus 205 ~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~ 239 (872)
=.- ...+...+-.++++.++..++..+.
T Consensus 127 ~~S-------~~~~~rE~al~il~s~~~~~~~~~~ 154 (1075)
T KOG2171|consen 127 TKS-------PNPSLRESALLILSSLPETFGNTLQ 154 (1075)
T ss_pred hcC-------CCcchhHHHHHHHHhhhhhhccccc
Confidence 211 0134556666666666666665554
No 20
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.0036 Score=66.83 Aligned_cols=228 Identities=14% Similarity=0.164 Sum_probs=118.9
Q ss_pred CchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCC--CHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHH
Q 002870 441 DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRE--DACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDV 518 (872)
Q Consensus 441 ~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~--~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~~~~~e~ 518 (872)
+.--+.-+.+.||-.. ++ .++..|...+.+. .+.+||.|.-+||-+. ++++.+.|.....|+. .++
T Consensus 49 s~llkhe~ay~LgQ~~----~~--~Av~~l~~vl~desq~pmvRhEAaealga~~----~~~~~~~l~k~~~dp~--~~v 116 (289)
T KOG0567|consen 49 SALLKHELAYVLGQMQ----DE--DAVPVLVEVLLDESQEPMVRHEAAEALGAIG----DPESLEILTKYIKDPC--KEV 116 (289)
T ss_pred hhhhccchhhhhhhhc----cc--hhhHHHHHHhcccccchHHHHHHHHHHHhhc----chhhHHHHHHHhcCCc--ccc
Confidence 3334444556666432 12 2666777766543 4788888888888743 5677777777775553 233
Q ss_pred HHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHH-hhhhhhhhhhhhH
Q 002870 519 IAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVS-KTFNEKIRKYCDM 597 (872)
Q Consensus 519 ~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L-~~~~~~i~r~~~~ 597 (872)
.-..-+|+..+--+.+-.... ....+. .. +|-.+ ...+ .+..+-..+ ....+-+-||.++
T Consensus 117 ~ETc~lAi~rle~~~~~~~~~-~~~p~~-Sv------dPa~p--------~~~s---sv~~lr~~lld~t~~l~~Ry~am 177 (289)
T KOG0567|consen 117 RETCELAIKRLEWKDIIDKIA-NSSPYI-SV------DPAPP--------ANLS---SVHELRAELLDETKPLFERYRAM 177 (289)
T ss_pred chHHHHHHHHHHHhhcccccc-ccCccc-cC------CCCCc--------cccc---cHHHHHHHHHhcchhHHHHHhhh
Confidence 223456666552222111100 000000 00 01100 0000 011111111 1222334455433
Q ss_pred HHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhc-CChhHHhHHHHHHh
Q 002870 598 TLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY-GEQNIRRAVPLALG 676 (872)
Q Consensus 598 ~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~-~~~~VR~ga~lALG 676 (872)
+. .---|...+|..|..-...+ +. -.|--+...+|- ++.| ..++.+...|... .+|-||.=++.|||
T Consensus 178 F~----LRn~g~EeaI~al~~~l~~~-Sa--lfrhEvAfVfGQ--l~s~---~ai~~L~k~L~d~~E~pMVRhEaAeALG 245 (289)
T KOG0567|consen 178 FY----LRNIGTEEAINALIDGLADD-SA--LFRHEVAFVFGQ--LQSP---AAIPSLIKVLLDETEHPMVRHEAAEALG 245 (289)
T ss_pred hH----hhccCcHHHHHHHHHhcccc-hH--HHHHHHHHHHhh--ccch---hhhHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 32 12334455555444433322 10 222222222222 2333 4455555555433 46999999999999
Q ss_pred hhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 002870 677 LLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGS 715 (872)
Q Consensus 677 L~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~a 715 (872)
-+ ++.++++.|.++++|+++-||..+.+|+-|.--
T Consensus 246 aI----a~e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 246 AI----ADEDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred hh----cCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 88 899999999999999999999999999988743
No 21
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.69 E-value=5.1e-05 Score=56.81 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=31.0
Q ss_pred HHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHH
Q 002870 670 AVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAM 704 (872)
Q Consensus 670 ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~ 704 (872)
|++++|||+|||+++.++++.|.++.+|++.+++|
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~~~~~~ 35 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTSNEMIQ 35 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSSHHHHH
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhccccccC
Confidence 68999999999999999999999999999998875
No 22
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.68 E-value=4e-05 Score=57.36 Aligned_cols=30 Identities=43% Similarity=0.802 Sum_probs=25.8
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHhcCCC
Q 002870 484 GAIMGLGISYAGTQNDQIRHKLSTILNDAK 513 (872)
Q Consensus 484 gA~lGLGLay~Gt~~~~i~e~L~~~L~d~~ 513 (872)
||++|||++|+||+++++++.|.|.+.|++
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~ 30 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTS 30 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSS
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 799999999999999999999999998764
No 23
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.60 E-value=0.00022 Score=63.22 Aligned_cols=86 Identities=27% Similarity=0.319 Sum_probs=49.7
Q ss_pred HHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHH
Q 002870 614 QNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 693 (872)
Q Consensus 614 ~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~ 693 (872)
..|++.+.++.+. .+|..++-.+|-+ ++ +.+...+..++++.||.||+.++.|||-+ |+.++++.|.+
T Consensus 2 ~~L~~~l~~~~~~--~vr~~a~~~L~~~--~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~~~~~~~L~~ 69 (88)
T PF13646_consen 2 PALLQLLQNDPDP--QVRAEAARALGEL--GD----PEAIPALIELLKDEDPMVRRAAARALGRI----GDPEAIPALIK 69 (88)
T ss_dssp HHHHHHHHTSSSH--HHHHHHHHHHHCC--TH----HHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HHHHTHHHHHH
T ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHc--CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHH
Confidence 3455555333332 5666666666622 22 33444444444667777777777777766 45667777766
Q ss_pred hhcC-CchHHHHHHHHHHH
Q 002870 694 LSHD-TDSEVAMAAVISLG 711 (872)
Q Consensus 694 l~~D-~d~~Vr~~AiiAlG 711 (872)
+..| .+..||..|+-|||
T Consensus 70 ~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTC-SSHHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhcC
Confidence 5544 44556777776665
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.43 E-value=0.00093 Score=59.25 Aligned_cols=87 Identities=26% Similarity=0.225 Sum_probs=67.8
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhh
Q 002870 653 IRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSY 732 (872)
Q Consensus 653 ~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~s~ 732 (872)
+.++..|.++.++.||..++.+||-. ++.++++.|..+.+|++..||+.|+.++|-++ +++....|.++..-
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----~~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL----GDPEAIPALIELLKDEDPMVRRAAARALGRIG----DPEAIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC----THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----HHHTHHHHHHHHTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHcC
Confidence 45677777889999999999999955 78899999999999999999999999999874 45666666664331
Q ss_pred hccChhhHHHHHHHHh
Q 002870 733 YYKDANLLFCVRIAQG 748 (872)
Q Consensus 733 ~~~d~~~~f~~~lAqG 748 (872)
..+...+..+.-|+|
T Consensus 74 -~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 74 -DDDEVVREAAAEALG 88 (88)
T ss_dssp --SSHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHhhcC
Confidence 234455676666655
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.88 E-value=0.084 Score=62.35 Aligned_cols=291 Identities=16% Similarity=0.148 Sum_probs=162.3
Q ss_pred HHHHHHHhhhhccccchh---hHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHH
Q 002870 411 KMSAAASLGMILLWDVDS---GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIM 487 (872)
Q Consensus 411 k~~A~aslGlI~~~~~~~---~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~l 487 (872)
|-.+-..+..+...+.+. +.+.+.+-+.++++++++-||=.++-+.. ..-.+++...+...+.++++.+|..|++
T Consensus 59 Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~l~~~v~~ll~~~~~~VRk~A~~ 136 (526)
T PF01602_consen 59 KRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEPLIPDVIKLLSDPSPYVRKKAAL 136 (526)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhHHHHHHHHHhcCCchHHHHHHHH
Confidence 333334444444444442 23445566778999999999999998863 1112345556666778899999999999
Q ss_pred HHHHHhccCCC--HH-HHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHH----HHHHHHHHhhcCccccCchhHh
Q 002870 488 GLGISYAGTQN--DQ-IRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEV----AQAIIFALMDRSESELGEPLTR 560 (872)
Q Consensus 488 GLGLay~Gt~~--~~-i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~----~e~ll~~L~~~~~~~l~e~~~r 560 (872)
++.-+|-...+ ++ +.+.|...+.|.+ ..+...|..++.-+ ..+++. ...+...|...- .. .++|.+
T Consensus 137 ~l~~i~~~~p~~~~~~~~~~l~~lL~d~~--~~V~~~a~~~l~~i---~~~~~~~~~~~~~~~~~L~~~l-~~-~~~~~q 209 (526)
T PF01602_consen 137 ALLKIYRKDPDLVEDELIPKLKQLLSDKD--PSVVSAALSLLSEI---KCNDDSYKSLIPKLIRILCQLL-SD-PDPWLQ 209 (526)
T ss_dssp HHHHHHHHCHCCHHGGHHHHHHHHTTHSS--HHHHHHHHHHHHHH---HCTHHHHTTHHHHHHHHHHHHH-TC-CSHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHH---ccCcchhhhhHHHHHHHhhhcc-cc-cchHHH
Confidence 99999865332 23 5777777776653 45555666666655 455544 333333332110 11 456766
Q ss_pred HHHHHHHhhhcCCh--hhH--HHHHHHHhh---hhhhhhhhhhHHHHHHhhhcCCC--HHHHHHHHHhhcccCCCCccch
Q 002870 561 LIPLGLGLLYLGKQ--ESV--EATAEVSKT---FNEKIRKYCDMTLLSCAYAGTGN--VLKVQNLLGHCAQHHEKGEAYQ 631 (872)
Q Consensus 561 ~~~lglgLl~~G~~--e~a--~~ll~~L~~---~~~~i~r~~~~~~~~lAyaGTGn--~~~i~~LL~~~~~~~~d~~~vr 631 (872)
...+-+- ..+.+. +.. ..+++.+.. ..++-..+.++-+.. .+...-. ..+++.|.+++.+. + +++|
T Consensus 210 ~~il~~l-~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~-~l~~~~~~~~~~~~~L~~lL~s~-~--~nvr 284 (526)
T PF01602_consen 210 IKILRLL-RRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLII-KLSPSPELLQKAINPLIKLLSSS-D--PNVR 284 (526)
T ss_dssp HHHHHHH-TTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSSSHHHHHHHHHHHHHHHTSS-S--HHHH
T ss_pred HHHHHHH-HhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHH-HhhcchHHHHhhHHHHHHHhhcc-c--chhe
Confidence 5554432 233332 222 234444332 233333333322211 1111111 24566677777632 2 2678
Q ss_pred hhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCC-chHHHHHHHHHH
Q 002870 632 GPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT-DSEVAMAAVISL 710 (872)
Q Consensus 632 r~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~-d~~Vr~~AiiAl 710 (872)
..++-.+..+....+.......-.+..+..+.|+.||.-+.-.+--++--++-..+++.|.++.++. +.+++..++-++
T Consensus 285 ~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I 364 (526)
T PF01602_consen 285 YIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAI 364 (526)
T ss_dssp HHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHH
T ss_pred hhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHH
Confidence 7777778888777631111111122333346788998877666666655555567888888888665 666888777777
Q ss_pred HHHcC
Q 002870 711 GLIGS 715 (872)
Q Consensus 711 GlV~a 715 (872)
+-+..
T Consensus 365 ~~la~ 369 (526)
T PF01602_consen 365 GDLAE 369 (526)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76543
No 26
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.86 E-value=0.077 Score=62.70 Aligned_cols=288 Identities=17% Similarity=0.073 Sum_probs=157.0
Q ss_pred cchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHH
Q 002870 425 DVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHK 504 (872)
Q Consensus 425 ~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~ 504 (872)
+++.++..+-+++.+.+...|--+.+++..+.....+..--+...|..-+.++++.+|.-|+=.|+-+. .+++.+.
T Consensus 39 ~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~ 114 (526)
T PF01602_consen 39 DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEP 114 (526)
T ss_dssp --GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHH
T ss_pred CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhH
Confidence 455566666777778888888888888888765432111113345555678899999988888877653 5666666
Q ss_pred HHHHh----cCCCCchHHHHHHHHHHHhHhcCCCCH--H-HHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCCh---
Q 002870 505 LSTIL----NDAKSPLDVIAFSAISLGLIYVGSCNE--E-VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ--- 574 (872)
Q Consensus 505 L~~~L----~d~~~~~e~~~~AaLALGLi~lGs~n~--~-~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~--- 574 (872)
+.|.+ .|+ +..+...|++++.-+|--..+. . ..+.+.+.|. + .++..+.+++.+-.-.-..+
T Consensus 115 l~~~v~~ll~~~--~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~---d---~~~~V~~~a~~~l~~i~~~~~~~ 186 (526)
T PF01602_consen 115 LIPDVIKLLSDP--SPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLS---D---KDPSVVSAALSLLSEIKCNDDSY 186 (526)
T ss_dssp HHHHHHHHHHSS--SHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTT---H---SSHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHhcCC--chHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhcc---C---CcchhHHHHHHHHHHHccCcchh
Confidence 66554 455 4577889999999998653331 1 2344444331 1 23444544433221110112
Q ss_pred -hhHHHHHHHHh---hhhhhhhhhhhHHHHHHhhhcCCCHHH------HHHHHHhhcccCCCCccchhhhHhHhhhhhhc
Q 002870 575 -ESVEATAEVSK---TFNEKIRKYCDMTLLSCAYAGTGNVLK------VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMA 644 (872)
Q Consensus 575 -e~a~~ll~~L~---~~~~~i~r~~~~~~~~lAyaGTGn~~~------i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~ 644 (872)
.....+++.|. ...+|+.+...+ ..+......+... ++.++....+. ++ .|.-.++-.+.-+.-.
T Consensus 187 ~~~~~~~~~~L~~~l~~~~~~~q~~il--~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~-~~--~V~~e~~~~i~~l~~~ 261 (526)
T PF01602_consen 187 KSLIPKLIRILCQLLSDPDPWLQIKIL--RLLRRYAPMEPEDADKNRIIEPLLNLLQSS-SP--SVVYEAIRLIIKLSPS 261 (526)
T ss_dssp TTHHHHHHHHHHHHHTCCSHHHHHHHH--HHHTTSTSSSHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHSSS
T ss_pred hhhHHHHHHHhhhcccccchHHHHHHH--HHHHhcccCChhhhhHHHHHHHHHHHhhcc-cc--HHHHHHHHHHHHhhcc
Confidence 22455555555 445666543222 2222333333222 33333333211 11 3333333333322222
Q ss_pred chhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCC-CchHHHHH-HHHhhcCCchHHHHHHHHHHHHHcCCCCchHH
Q 002870 645 EELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISN-PKVNVMDT-LSRLSHDTDSEVAMAAVISLGLIGSGTNNARI 722 (872)
Q Consensus 645 ~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt-~~~~aid~-L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv 722 (872)
.+ -...+...+..++.+.++++|+.+.-++..++..+ +...-... +..+..|.|..||..|+--+..+ .++..+
T Consensus 262 ~~-~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l---~~~~n~ 337 (526)
T PF01602_consen 262 PE-LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKL---ANESNV 337 (526)
T ss_dssp HH-HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH-----HHHH
T ss_pred hH-HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhc---ccccch
Confidence 22 12456666677778899999999999998887666 22221122 23334588999998665544444 344455
Q ss_pred HHHHHHhhhhh
Q 002870 723 AGMLRNLSSYY 733 (872)
Q Consensus 723 ~~~lr~l~s~~ 733 (872)
..++..|.+|.
T Consensus 338 ~~Il~eL~~~l 348 (526)
T PF01602_consen 338 KEILDELLKYL 348 (526)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 66777776665
No 27
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.13 Score=60.43 Aligned_cols=242 Identities=16% Similarity=0.198 Sum_probs=161.3
Q ss_pred HHHhhcC-CCCHHHHHHHHHHHHHHhccCCCH-------HHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCH----
Q 002870 469 LLSEYVG-REDACIRIGAIMGLGISYAGTQND-------QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE---- 536 (872)
Q Consensus 469 lL~~~L~-~~~~~v~~gA~lGLGLay~Gt~~~-------~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~---- 536 (872)
.|.+.+. +.++.++.-|+-+|-=+..||... ..+-.+..++.++ +.+++.-|..|||-| .|-+..
T Consensus 113 ~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~--~~~v~eQavWALgNI-agds~~~Rd~ 189 (514)
T KOG0166|consen 113 RLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP--SADVREQAVWALGNI-AGDSPDCRDY 189 (514)
T ss_pred HHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC--cHHHHHHHHHHHhcc-ccCChHHHHH
Confidence 3444454 455788888988888887777632 2334455555544 456677899999988 444421
Q ss_pred ----HHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCCh-----hhHHHHHHH---HhhhhhhhhhhhhHHHHHHhh
Q 002870 537 ----EVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ-----ESVEATAEV---SKTFNEKIRKYCDMTLLSCAY 604 (872)
Q Consensus 537 ----~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~-----e~a~~ll~~---L~~~~~~i~r~~~~~~~~lAy 604 (872)
.+++.++..+.. .. ...+.|-+.-.|.-++-|+. +.+..++.. |....|+....-++ -+++|
T Consensus 190 vl~~g~l~pLl~~l~~--~~--~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~--WAlsy 263 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNK--SD--KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDAC--WALSY 263 (514)
T ss_pred HHhhcchHHHHHHhcc--cc--chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHH
Confidence 234455554321 11 23578888888898888885 455555444 44456666664444 45888
Q ss_pred hcCCCHHHHHHHHHh--------hcccCCCCccchhhhHhHhhhhhhcchhhHhH-----HHHHHHHHhh-cCChhHHhH
Q 002870 605 AGTGNVLKVQNLLGH--------CAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM-----AIRSLEHLLQ-YGEQNIRRA 670 (872)
Q Consensus 605 aGTGn~~~i~~LL~~--------~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~-----~~~il~~L~~-~~~~~VR~g 670 (872)
.--|.++.||.++.. +-.+.+. .++-.|+-++|=|..|++.-.+. +.+.|..|+. ++..+||.-
T Consensus 264 Lsdg~ne~iq~vi~~gvv~~LV~lL~~~~~--~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkE 341 (514)
T KOG0166|consen 264 LTDGSNEKIQMVIDAGVVPRLVDLLGHSSP--KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKE 341 (514)
T ss_pred HhcCChHHHHHHHHccchHHHHHHHcCCCc--ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHH
Confidence 888888888865432 2233343 67888999999999998832111 2334455554 777889999
Q ss_pred HHHHHhhhccCCC-------chHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchH
Q 002870 671 VPLALGLLCISNP-------KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNAR 721 (872)
Q Consensus 671 a~lALGL~~agt~-------~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~r 721 (872)
+|++++=+.|||. +..++..|-.+.+..+-..|.-|..|++=..+|.+...
T Consensus 342 AcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~q 399 (514)
T KOG0166|consen 342 ACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQ 399 (514)
T ss_pred HHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHH
Confidence 9999999999998 33455666777777887799999999998888877433
No 28
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.74 E-value=0.4 Score=64.61 Aligned_cols=280 Identities=14% Similarity=0.081 Sum_probs=172.4
Q ss_pred hhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChh-----hHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH--
Q 002870 427 DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCD-----PALALLSEYVGREDACIRIGAIMGLGISYAGTQND-- 499 (872)
Q Consensus 427 ~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d-----~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~-- 499 (872)
.++...|-..|...+..++.-++.+|..+..|..+... -.+..|...|.+++...|..|+..||.+..|+.+.
T Consensus 403 ~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 403 AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34556666667777788888888888777665321100 14567778888888888889999999887765431
Q ss_pred -----HHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCH-H------HHHHHHHHHhhcCccccCchhHhHHHHHHH
Q 002870 500 -----QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE-E------VAQAIIFALMDRSESELGEPLTRLIPLGLG 567 (872)
Q Consensus 500 -----~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~-~------~~e~ll~~L~~~~~~~l~e~~~r~~~lglg 567 (872)
..+..|..+|..+ +.+++.-|+.+||-+-.++.+. . ++..|++.|.. . ..+..+-++-+|.
T Consensus 483 aIieaGaIP~LV~LL~s~--~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s-g----d~~~q~~Aa~AL~ 555 (2102)
T PLN03200 483 AITAAGGIPPLVQLLETG--SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN-G----GPKGQEIAAKTLT 555 (2102)
T ss_pred HHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC-C----CHHHHHHHHHHHH
Confidence 3456677777643 3455567888999774433211 1 23344554421 1 2344555666665
Q ss_pred -hhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhh-hcCC---------CHHHHHHHHHhhcccCCCCccchhhhHh
Q 002870 568 -LLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAY-AGTG---------NVLKVQNLLGHCAQHHEKGEAYQGPAVL 636 (872)
Q Consensus 568 -Ll~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAy-aGTG---------n~~~i~~LL~~~~~~~~d~~~vrr~Avl 636 (872)
|+.-|..+.+..+++.|......+..+ ..-+++... .+.+ +...++.|.+...+. ++ .++.-|+-
T Consensus 556 nLi~~~d~~~I~~Lv~LLlsdd~~~~~~-aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~--~ikk~Aa~ 631 (2102)
T PLN03200 556 KLVRTADAATISQLTALLLGDLPESKVH-VLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KE--ETQEKAAS 631 (2102)
T ss_pred HHHhccchhHHHHHHHHhcCCChhHHHH-HHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CH--HHHHHHHH
Confidence 555566667777776665433222222 222222211 1112 223556666665543 33 78888888
Q ss_pred Hhhhhhhcchhh------HhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchH--------HHHHHHHhhcCCchHH
Q 002870 637 GIAMVAMAEELG------LEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVN--------VMDTLSRLSHDTDSEV 702 (872)
Q Consensus 637 ~iglI~~~~~~g------~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~--------aid~L~~l~~D~d~~V 702 (872)
.|+-++-+++-- .+.++.++..| ++++..+|+.++.||+-++.+....+ ++..|-++.++++..+
T Consensus 632 iLsnL~a~~~d~~~avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v 710 (2102)
T PLN03200 632 VLADIFSSRQDLCESLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEV 710 (2102)
T ss_pred HHHHHhcCChHHHHHHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHH
Confidence 888888777521 12345555555 67888999999999987764333222 2456777789999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 002870 703 AMAAVISLGLIGSGTN 718 (872)
Q Consensus 703 r~~AiiAlGlV~aGt~ 718 (872)
+..|.-|++-+.....
T Consensus 711 ~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 711 AEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHHHHHHHHHHcCch
Confidence 9999999988877654
No 29
>PTZ00429 beta-adaptin; Provisional
Probab=96.51 E-value=0.75 Score=57.16 Aligned_cols=271 Identities=15% Similarity=0.104 Sum_probs=133.9
Q ss_pred HhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC----HHHHHHHH
Q 002870 431 AQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN----DQIRHKLS 506 (872)
Q Consensus 431 ~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~----~~i~e~L~ 506 (872)
+.|.+-+.+.++.+|+-||=.+|.+.... -.+.+...+...+.+++++||-.|++++.-+|--..+ ..+.+.|.
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~~~--i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~ 185 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRVSS--VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLV 185 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCcHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHH
Confidence 34555667889999999999998774321 1233455556677889999999999999999865432 24567777
Q ss_pred HHhcCCCCchHHHHHHHHHHHhHhcCCCC-HHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCC--hhhHHHHHHH
Q 002870 507 TILNDAKSPLDVIAFSAISLGLIYVGSCN-EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGK--QESVEATAEV 583 (872)
Q Consensus 507 ~~L~d~~~~~e~~~~AaLALGLi~lGs~n-~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~--~e~a~~ll~~ 583 (872)
..+.|.+ ..|...|..+|=-|.--..+ -+.....+..|...- .+ -++|.+...+-+ |..+.- .+.+..+++.
T Consensus 186 ~LL~D~d--p~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L-~e-~~EW~Qi~IL~l-L~~y~P~~~~e~~~il~~ 260 (746)
T PTZ00429 186 ELLNDNN--PVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHL-PE-CNEWGQLYILEL-LAAQRPSDKESAETLLTR 260 (746)
T ss_pred HHhcCCC--ccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHh-hc-CChHHHHHHHHH-HHhcCCCCcHHHHHHHHH
Confidence 7777764 33433444444444211110 011112222222211 11 235766644332 222322 2234444444
Q ss_pred Hhh---hhhhhhhhhhHHHHHHhhhcCCCHHHHHHH--------HHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHH
Q 002870 584 SKT---FNEKIRKYCDMTLLSCAYAGTGNVLKVQNL--------LGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMA 652 (872)
Q Consensus 584 L~~---~~~~i~r~~~~~~~~lAyaGTGn~~~i~~L--------L~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~ 652 (872)
+.. ..++-.-++++-+ -+.+.-..+...++.. +... +. + +++|-.++-.|-+|....| ...
T Consensus 261 l~~~Lq~~N~AVVl~Aik~-il~l~~~~~~~~~~~~~~rl~~pLv~L~-ss-~--~eiqyvaLr~I~~i~~~~P---~lf 332 (746)
T PTZ00429 261 VLPRMSHQNPAVVMGAIKV-VANLASRCSQELIERCTVRVNTALLTLS-RR-D--AETQYIVCKNIHALLVIFP---NLL 332 (746)
T ss_pred HHHHhcCCCHHHHHHHHHH-HHHhcCcCCHHHHHHHHHHHHHHHHHhh-CC-C--ccHHHHHHHHHHHHHHHCH---HHH
Confidence 332 1222222222211 0111111122333221 2221 11 1 2455555556666666655 222
Q ss_pred HHHHHHH-hhcCCh-hHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 002870 653 IRSLEHL-LQYGEQ-NIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716 (872)
Q Consensus 653 ~~il~~L-~~~~~~-~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aG 716 (872)
..-++.+ ..+.|| +||.-.-=.|-.++-.++-.++++.|..|+.|.|..+++-||-|+|-+...
T Consensus 333 ~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 333 RTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred HHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 2223333 333343 344433333333333444456667777777777777777777777776543
No 30
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.45 E-value=0.64 Score=62.79 Aligned_cols=271 Identities=15% Similarity=0.084 Sum_probs=168.1
Q ss_pred cCchhHHHHHHHhhhhccccch--------hhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChh-----hHHHHHHh
Q 002870 406 NKEHGKMSAAASLGMILLWDVD--------SGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCD-----PALALLSE 472 (872)
Q Consensus 406 ~~~~~k~~A~aslGlI~~~~~~--------~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d-----~~~~lL~~ 472 (872)
.+.-.+-.|+..+|.+-.++.+ .++..|-+.|.+++..++--|+-+||-+.++..+-.+ -++..|.+
T Consensus 458 ~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~ 537 (2102)
T PLN03200 458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLW 537 (2102)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHH
Confidence 3344566677778877666543 3577788888888899999999999987663211000 13455666
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHh-cCCCC---------HHHHHHH
Q 002870 473 YVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIY-VGSCN---------EEVAQAI 542 (872)
Q Consensus 473 ~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~-lGs~n---------~~~~e~l 542 (872)
.|.+.+...+.-|+-+|.-...+. +.+....|...+..++.. ....+.-++|-+. ++.++ ...++.|
T Consensus 538 LL~sgd~~~q~~Aa~AL~nLi~~~-d~~~I~~Lv~LLlsdd~~--~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~L 614 (2102)
T PLN03200 538 LLKNGGPKGQEIAAKTLTKLVRTA-DAATISQLTALLLGDLPE--SKVHVLDVLGHVLSVASLEDLVREGSAANDALRTL 614 (2102)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhcc-chhHHHHHHHHhcCCChh--HHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHH
Confidence 777777788888888887765543 455666677776533222 2223444666652 23332 1244555
Q ss_pred HHHHhhcCccccCchhHhHHHHHHHhhhcCChhhH---------HHHHHHHhhhhhhhhhhhhHHHHHHhh-hcCCCH--
Q 002870 543 IFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV---------EATAEVSKTFNEKIRKYCDMTLLSCAY-AGTGNV-- 610 (872)
Q Consensus 543 l~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a---------~~ll~~L~~~~~~i~r~~~~~~~~lAy-aGTGn~-- 610 (872)
.+.|. ++ ++.+.+-++-.++=++-|+++.. +.+++.|...+.++.+. ++++++-.+ .|+.+.
T Consensus 615 v~LL~--sg---s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~ke-AA~AL~nL~~~~~~~q~~ 688 (2102)
T PLN03200 615 IQLLS--SS---KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQ-SARALAALSRSIKENRKV 688 (2102)
T ss_pred HHHHc--CC---CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHH-HHHHHHHHHhCCCHHHHH
Confidence 55442 22 45677777778888888888754 45666666655555555 444544333 233222
Q ss_pred H-----HHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchh----hHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccC
Q 002870 611 L-----KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEEL----GLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCIS 681 (872)
Q Consensus 611 ~-----~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~----g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~ag 681 (872)
. +|..|...+... +. +++..++-+++.++..-+. +.+-+...+-.+++++++..|..++.||.-+|-+
T Consensus 689 ~~v~~GaV~pL~~LL~~~-d~--~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 689 SYAAEDAIKPLIKLAKSS-SI--EVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred HHHHcCCHHHHHHHHhCC-Ch--HHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence 1 233455665432 22 6888899999998876542 2223344556677999999999999999999887
Q ss_pred CCchHHH
Q 002870 682 NPKVNVM 688 (872)
Q Consensus 682 t~~~~ai 688 (872)
.+..+++
T Consensus 766 ~~~~~~~ 772 (2102)
T PLN03200 766 FPVDDVL 772 (2102)
T ss_pred CChhHHH
Confidence 7755533
No 31
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.34 E-value=4.2 Score=50.03 Aligned_cols=252 Identities=15% Similarity=0.091 Sum_probs=121.3
Q ss_pred hhhhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC
Q 002870 418 LGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ 497 (872)
Q Consensus 418 lGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~ 497 (872)
......|+.++++..+.+.+....... .+...+|.++.... +.+.+...+...+....... .+...++.++.-.+
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQPDSA--LALLLLADAYAVMK-NYAKAITSLKRALELKPDNT--EAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcC
Confidence 334456788888877776654222222 33444555543221 22346766666654322111 23344555555555
Q ss_pred CHHHHHHHHHHh-cCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhh
Q 002870 498 NDQIRHKLSTIL-NDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES 576 (872)
Q Consensus 498 ~~~i~e~L~~~L-~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~ 576 (872)
+.+-...+...+ .......+ .-..+|.++...++.+.+...+...+...++ . .....++..+...|+.++
T Consensus 684 ~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 684 RTESAKKIAKSLQKQHPKAAL----GFELEGDLYLRQKDYPAAIQAYRKALKRAPS---S--QNAIKLHRALLASGNTAE 754 (899)
T ss_pred CHHHHHHHHHHHHhhCcCChH----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---c--hHHHHHHHHHHHCCCHHH
Confidence 443333333333 21111122 3445677777777765555555544433222 1 222334555667777777
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHH
Q 002870 577 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSL 656 (872)
Q Consensus 577 a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il 656 (872)
+...++........ .......++..|...|+.....+.++.+.....+ +.. +...+|.+...... ..+...+
T Consensus 755 A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~--~~~~l~~~~~~~~~--~~A~~~~ 826 (899)
T TIGR02917 755 AVKTLEAWLKTHPN--DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD--NAV--VLNNLAWLYLELKD--PRALEYA 826 (899)
T ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC--CHH--HHHHHHHHHHhcCc--HHHHHHH
Confidence 77666655443211 1233456777888889876665555544432221 222 23334444333221 2355555
Q ss_pred HHHhhc--CChhHHhHHHHHHhhhccCCCc-hHHHHHHHHhh
Q 002870 657 EHLLQY--GEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS 695 (872)
Q Consensus 657 ~~L~~~--~~~~VR~ga~lALGL~~agt~~-~~aid~L~~l~ 695 (872)
+..... .+|.+. ..+|.++...++ .+++..+.+..
T Consensus 827 ~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 827 EKALKLAPNIPAIL----DTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHhhCCCCcHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 554433 233332 234444444343 35777777665
No 32
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.08 E-value=5.6 Score=48.96 Aligned_cols=304 Identities=14% Similarity=0.110 Sum_probs=157.2
Q ss_pred hccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC-H
Q 002870 421 ILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-D 499 (872)
Q Consensus 421 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~-~ 499 (872)
...|+.++++..+.+.+........ +...+|.++.... +.+.++..+...+...... ..+...+|.+|.-.++ +
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAAPDSPE--AWLMLGRAQLAAG-DLNKAVSSFKKLLALQPDS--ALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHH
Confidence 3457888888888877653333333 3344444443222 2234666666555321111 1234455666644443 3
Q ss_pred HHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHH
Q 002870 500 QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 578 (872)
Q Consensus 500 ~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~ 578 (872)
+..+.+...+. ++. ..+ +-+.++.++.-.++.+.+..+++.+.+..+. + ......+|..+...|+-+++.
T Consensus 653 ~A~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 653 KAITSLKRALELKPD-NTE----AQIGLAQLLLAAKRTESAKKIAKSLQKQHPK---A-ALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHHHHHHHHHhcCCC-CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---C-hHHHHHHHHHHHHCCCHHHHH
Confidence 44555555543 221 222 4455666666666666666677666543221 1 122233444555566666666
Q ss_pred HHHHHHhhh-hhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHH
Q 002870 579 ATAEVSKTF-NEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLE 657 (872)
Q Consensus 579 ~ll~~L~~~-~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~ 657 (872)
..++..... +++ .....++.+|...|+.....+.+.-+.+...+ +......+|..+...|+. +.+..++.
T Consensus 724 ~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~---~~A~~~~~ 794 (899)
T TIGR02917 724 QAYRKALKRAPSS----QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN--DAVLRTALAELYLAQKDY---DKAIKHYR 794 (899)
T ss_pred HHHHHHHhhCCCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCcCH---HHHHHHHH
Confidence 666554432 222 33455677888899876555544443332222 444445555555556776 78888888
Q ss_pred HHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCCc-hHHHHHHHHhhhhhcc
Q 002870 658 HLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTNN-ARIAGMLRNLSSYYYK 735 (872)
Q Consensus 658 ~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~-D~d~~Vr~~AiiAlGlV~aGt~n-~rv~~~lr~l~s~~~~ 735 (872)
.+.+....+... -..+|.++...++.++++.+++... ++++.. ....+|.+....++ .+....+++..+....
T Consensus 795 ~~~~~~p~~~~~--~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 795 TVVKKAPDNAVV--LNNLAWLYLELKDPRALEYAEKALKLAPNIPA---ILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHhCCCCHHH--HHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 887654332222 2233333334445779988887743 344322 23345555555554 2344555554442222
Q ss_pred ChhhHHHHHHHHhhhhcCC
Q 002870 736 DANLLFCVRIAQGLVHMGK 754 (872)
Q Consensus 736 d~~~~f~~~lAqGll~~G~ 754 (872)
++ .....+++.+...|+
T Consensus 870 ~~--~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 870 AA--AIRYHLALALLATGR 886 (899)
T ss_pred Ch--HHHHHHHHHHHHcCC
Confidence 33 344456666666654
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.92 E-value=4 Score=45.96 Aligned_cols=282 Identities=13% Similarity=0.073 Sum_probs=145.8
Q ss_pred hhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCC--HHHHHHHHHHHHHHhccCC
Q 002870 420 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED--ACIRIGAIMGLGISYAGTQ 497 (872)
Q Consensus 420 lI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~--~~v~~gA~lGLGLay~Gt~ 497 (872)
.+..++.++++..+.+-+...... ..+...+|.++....+ .+.++..+...+..+. .....-+...||.+|...+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPET--VELHLALGNLFRRRGE-VDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCc-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 345678888888888776543332 2345556655543322 3347777666665432 2333456777888888776
Q ss_pred CH-HHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHh-HHHHHHHhhhcCChh
Q 002870 498 ND-QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTR-LIPLGLGLLYLGKQE 575 (872)
Q Consensus 498 ~~-~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r-~~~lglgLl~~G~~e 575 (872)
+- +..+.+...+....... .+-..++.++.-.++.+-+..++..+....+......... ...+|..+.-.|+.+
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAE----GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CHHHHHHHHHHHHcCCcchH----HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 54 34444444443211111 3556677777777776655555555544322210111111 122333344456666
Q ss_pred hHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHH
Q 002870 576 SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRS 655 (872)
Q Consensus 576 ~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~i 655 (872)
++...++.+....... ....+.+|..|...|+.....+++.-+.+...+ ........++-++...|+. +.+.+.
T Consensus 198 ~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~l~~~~~~~g~~---~~A~~~ 271 (389)
T PRK11788 198 AARALLKKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPE-YLSEVLPKLMECYQALGDE---AEGLEF 271 (389)
T ss_pred HHHHHHHHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh-hHHHHHHHHHHHHHHcCCH---HHHHHH
Confidence 6766666554432111 123456788889999976655555554432111 0111123344455555665 777777
Q ss_pred HHHHhhcCChhHHhHHHHHHhhhccCCCch-HHHHHHHHhh-cCCchHHHHHHHHHHHHHcCCCC
Q 002870 656 LEHLLQYGEQNIRRAVPLALGLLCISNPKV-NVMDTLSRLS-HDTDSEVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 656 l~~L~~~~~~~VR~ga~lALGL~~agt~~~-~aid~L~~l~-~D~d~~Vr~~AiiAlGlV~aGt~ 718 (872)
+....+. +|..... ..+|.++...++. +++..|.+.. .+|++. ....+++..+..++.+
T Consensus 272 l~~~~~~-~p~~~~~--~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 272 LRRALEE-YPGADLL--LALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHHh-CCCchHH--HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCc
Confidence 7776554 2333222 4455444444433 5677776554 445543 3444555555455433
No 34
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.77 E-value=0.66 Score=50.11 Aligned_cols=256 Identities=16% Similarity=0.120 Sum_probs=153.0
Q ss_pred hHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHH
Q 002870 444 VIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSA 523 (872)
Q Consensus 444 ~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~~~~~e~~~~Aa 523 (872)
-+.-|++-|-.+... .+++.+.....+.++...|-.++.||= .++++....|..++.|.+..+.+.+-||
T Consensus 21 ~r~rALf~Lr~l~~~------~~i~~i~ka~~d~s~llkhe~ay~LgQ----~~~~~Av~~l~~vl~desq~pmvRhEAa 90 (289)
T KOG0567|consen 21 NRFRALFNLRNLLGP------AAIKAITKAFIDDSALLKHELAYVLGQ----MQDEDAVPVLVEVLLDESQEPMVRHEAA 90 (289)
T ss_pred HHHHHHHhhhccCCh------HHHHHHHHhcccchhhhccchhhhhhh----hccchhhHHHHHHhcccccchHHHHHHH
Confidence 445566655443221 145666677777777888888888885 4678999999999998876667788899
Q ss_pred HHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHH-hhhhhhhhhhhhHHHHHH
Q 002870 524 ISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVS-KTFNEKIRKYCDMTLLSC 602 (872)
Q Consensus 524 LALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L-~~~~~~i~r~~~~~~~~l 602 (872)
-+||-++ ..+..+.+-++. + ++ .-++...+-+++. .+...+..+...+.. -...||-.+
T Consensus 91 ealga~~----~~~~~~~l~k~~-~-dp---~~~v~ETc~lAi~--rle~~~~~~~~~~~~p~~SvdPa~p--------- 150 (289)
T KOG0567|consen 91 EALGAIG----DPESLEILTKYI-K-DP---CKEVRETCELAIK--RLEWKDIIDKIANSSPYISVDPAPP--------- 150 (289)
T ss_pred HHHHhhc----chhhHHHHHHHh-c-CC---ccccchHHHHHHH--HHHHhhccccccccCccccCCCCCc---------
Confidence 9999983 555666666653 1 11 1223333444433 222222222210000 000222222
Q ss_pred hhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCC
Q 002870 603 AYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISN 682 (872)
Q Consensus 603 AyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt 682 (872)
+.++++..++..|---.. . ..+|.. ++-..++--|.+.+..+.+-|.-+ .+-.|.-+++.+|.+
T Consensus 151 --~~~ssv~~lr~~lld~t~---~--l~~Ry~----amF~LRn~g~EeaI~al~~~l~~~-SalfrhEvAfVfGQl---- 214 (289)
T KOG0567|consen 151 --ANLSSVHELRAELLDETK---P--LFERYR----AMFYLRNIGTEEAINALIDGLADD-SALFRHEVAFVFGQL---- 214 (289)
T ss_pred --cccccHHHHHHHHHhcch---h--HHHHHh----hhhHhhccCcHHHHHHHHHhcccc-hHHHHHHHHHHHhhc----
Confidence 355666655554432111 1 444442 222223322237777777777544 789999999999999
Q ss_pred CchHHHHHHHHhhcCC--chHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhhccChhhHHHHHHHHhhhh
Q 002870 683 PKVNVMDTLSRLSHDT--DSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVH 751 (872)
Q Consensus 683 ~~~~aid~L~~l~~D~--d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~s~~~~d~~~~f~~~lAqGll~ 751 (872)
..+.+|..|.+-..|. ...||.-|..|||.|+ +....+.|+++.. -.++..+-.+..|+-+..
T Consensus 215 ~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa----~e~~~~vL~e~~~--D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 215 QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIA----DEDCVEVLKEYLG--DEERVVRESCEVALDMLE 279 (289)
T ss_pred cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhc----CHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHH
Confidence 6777888888777775 5789999999999983 4556677777433 133456667766665543
No 35
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.53 E-value=0.035 Score=51.38 Aligned_cols=79 Identities=24% Similarity=0.241 Sum_probs=54.9
Q ss_pred chhhhHhHhhhhhhcchhh-HhHHHHHHH---HHhhcCChhHHhHHHHHHhhhccCCC------chHHHHHHHHhhcCCc
Q 002870 630 YQGPAVLGIAMVAMAEELG-LEMAIRSLE---HLLQYGEQNIRRAVPLALGLLCISNP------KVNVMDTLSRLSHDTD 699 (872)
Q Consensus 630 vrr~Avl~iglI~~~~~~g-~e~~~~il~---~L~~~~~~~VR~ga~lALGL~~agt~------~~~aid~L~~l~~D~d 699 (872)
.|+++++|++-++.+-+.- .+....++. ..+.+.|+.|||.+|-||.-+.-..+ -.++++.|.+++.|+|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4778888888876664411 122222222 33477899999999999987743222 2567889999999999
Q ss_pred hHHHHHHHH
Q 002870 700 SEVAMAAVI 708 (872)
Q Consensus 700 ~~Vr~~Aii 708 (872)
..||.+|-+
T Consensus 82 ~~Vr~~a~~ 90 (97)
T PF12755_consen 82 ENVRSAAEL 90 (97)
T ss_pred hhHHHHHHH
Confidence 999987743
No 36
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=1.1 Score=56.53 Aligned_cols=265 Identities=17% Similarity=0.111 Sum_probs=133.9
Q ss_pred HHhHhhhccCCCchhHHHHHHHHHHh-------hcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccC-CCHHH
Q 002870 430 LAQIDKYFHSTDNHVIAGALLGVGIV-------NCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGT-QNDQI 501 (872)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli-------~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt-~~~~i 501 (872)
++.|..-..+.++..|-.|++-|--+ ..++.+ .++.++..-+.+++..+|+.|+=|+|....-. .+.+.
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~---~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~ 196 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD---DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSE 196 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH---HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHH
Confidence 45555556677777777776654332 222222 37788888888887779999999998765544 33333
Q ss_pred H---HHHHHHhc----CCCCchHHHHHHHHHHHhH--hcCCCC---HHHHHHHHHHHhh-cCccccCchhHhHHHHHHHh
Q 002870 502 R---HKLSTILN----DAKSPLDVIAFSAISLGLI--YVGSCN---EEVAQAIIFALMD-RSESELGEPLTRLIPLGLGL 568 (872)
Q Consensus 502 ~---e~L~~~L~----d~~~~~e~~~~AaLALGLi--~lGs~n---~~~~e~ll~~L~~-~~~~~l~e~~~r~~~lglgL 568 (872)
. -.++|-+. +.-...+. -.|..+++.+ ++.+.. ....+.+++..++ ..+.++ +.-+|-.++-+=.
T Consensus 197 ~~~~~~llP~~l~vl~~~i~~~d~-~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l-~~~~R~~ALe~iv 274 (1075)
T KOG2171|consen 197 VDKFRDLLPSLLNVLQEVIQDGDD-DAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKEL-ENSIRHLALEFLV 274 (1075)
T ss_pred HHHHHHHhHHHHHHhHhhhhccch-HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccc-cHHHHHHHHHHHH
Confidence 2 33444221 10000110 0233444332 111111 1222333332222 122332 3334444333211
Q ss_pred hhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCC---ccchhhhHhHhhhhhhcc
Q 002870 569 LYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKG---EAYQGPAVLGIAMVAMAE 645 (872)
Q Consensus 569 l~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~---~~vrr~Avl~iglI~~~~ 645 (872)
.+.. .+..+..... ++...--..++.++-=++.+ + .+.+++..|+ +...+.|.-+|..++++=
T Consensus 275 s~~e---~Ap~~~k~~~----~~~~~lv~~~l~~mte~~~D----~---ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L 340 (1075)
T KOG2171|consen 275 SLSE---YAPAMCKKLA----LLGHTLVPVLLAMMTEEEDD----D---EWSNEDDLDEDDEETPYRAAEQALDRLALHL 340 (1075)
T ss_pred HHHH---hhHHHhhhch----hhhccHHHHHHHhcCCcccc----h---hhccccccccccccCcHHHHHHHHHHHHhcC
Confidence 1110 0222222111 11111111122222222222 1 1112122111 235677888888887765
Q ss_pred hhhHhHHHHHH---HHHhhcCChhHHhHHHHHHhhhccCCCc------hHHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 002870 646 ELGLEMAIRSL---EHLLQYGEQNIRRAVPLALGLLCISNPK------VNVMDTLSRLSHDTDSEVAMAAVISLGLIG 714 (872)
Q Consensus 646 ~~g~e~~~~il---~~L~~~~~~~VR~ga~lALGL~~agt~~------~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~ 714 (872)
+ |...+|-++ ..++++.++.-|.++-+|++.+.=|.++ +++++...++..||.+.||.+|+.|+|-+.
T Consensus 341 ~-g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~s 417 (1075)
T KOG2171|consen 341 G-GKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMS 417 (1075)
T ss_pred C-hhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhh
Confidence 4 345555554 5567889999999999999977555443 234455556679999999999999999873
No 37
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.40 E-value=0.032 Score=45.42 Aligned_cols=48 Identities=35% Similarity=0.464 Sum_probs=36.6
Q ss_pred hhHHhHHHHHHhhhccCCCc------hHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 002870 665 QNIRRAVPLALGLLCISNPK------VNVMDTLSRLSHDTDSEVAMAAVISLGL 712 (872)
Q Consensus 665 ~~VR~ga~lALGL~~agt~~------~~aid~L~~l~~D~d~~Vr~~AiiAlGl 712 (872)
|.||.+++.+||-+.-+.+. .+++..|.++..|+++.||.+|+.|+|-
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 56888888888865433332 3567778888899999999999999984
No 38
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.99 E-value=1.2 Score=52.62 Aligned_cols=275 Identities=19% Similarity=0.153 Sum_probs=144.3
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHhhcCCCC-HHHHHHHHHHHHHHh-ccCCCHHHHHHHHHHhc----C--CCCchHHHH
Q 002870 449 LLGVGIVNCGIRNDCDPALALLSEYVGRED-ACIRIGAIMGLGISY-AGTQNDQIRHKLSTILN----D--AKSPLDVIA 520 (872)
Q Consensus 449 llaLGli~~G~~~e~d~~~~lL~~~L~~~~-~~v~~gA~lGLGLay-~Gt~~~~i~e~L~~~L~----d--~~~~~e~~~ 520 (872)
.=|+|+.+--.+.+. -++.-|.+++..+. -.-+++-+++.-.+. .=-.|.+....+.|.|. | ..+.+|++
T Consensus 208 YHalGlLyq~kr~dk-ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~A- 285 (898)
T COG5240 208 YHALGLLYQSKRTDK-MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAA- 285 (898)
T ss_pred HHHHHHHHHHhcccH-HHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHH-
Confidence 345677776554331 13333445554432 222333333322211 11245677788888875 3 23567753
Q ss_pred HHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHH-HhhhcCChh---hHHHHHHHHhhhhh-hhhhhh
Q 002870 521 FSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGL-GLLYLGKQE---SVEATAEVSKTFNE-KIRKYC 595 (872)
Q Consensus 521 ~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lgl-gLl~~G~~e---~a~~ll~~L~~~~~-~i~r~~ 595 (872)
-+..++..=++|+..-+.+-.-++.++.. +....||.|+-+ .=+-+.+++ .+..-+|.|..+.+ .|.-|+
T Consensus 286 r~v~~~~~~nv~~~~~~~~vs~L~~fL~s-----~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyA 360 (898)
T COG5240 286 RAVCALSEENVGSQFVDQTVSSLRTFLKS-----TRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYA 360 (898)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHH
Confidence 24445556666665443333333333321 445677777543 333334444 33444555554433 233333
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHhhcc---cCCCC------------------------------------ccchhhhHh
Q 002870 596 DMTLLSCAYAGTGNVLKVQNLLGHCAQ---HHEKG------------------------------------EAYQGPAVL 636 (872)
Q Consensus 596 ~~~~~~lAyaGTGn~~~i~~LL~~~~~---~~~d~------------------------------------~~vrr~Avl 636 (872)
-+ ....||+.+.|.+|+....+ |.+|+ =..++++|=
T Consensus 361 IT-----tLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vd 435 (898)
T COG5240 361 IT-----TLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVD 435 (898)
T ss_pred HH-----HHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 22 23689999989888765543 33332 022455555
Q ss_pred HhhhhhhcchhhHhHHH-----------------HHHHHHhh--------------------cCChhHHhHHHHHHhhhc
Q 002870 637 GIAMVAMAEELGLEMAI-----------------RSLEHLLQ--------------------YGEQNIRRAVPLALGLLC 679 (872)
Q Consensus 637 ~iglI~~~~~~g~e~~~-----------------~il~~L~~--------------------~~~~~VR~ga~lALGL~~ 679 (872)
+|.=++-..|...|.+. ||+..|-+ -.|.+||.|+--||.-..
T Consensus 436 aisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ 515 (898)
T COG5240 436 AISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFA 515 (898)
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 55554444442222222 23322211 135688999888884321
Q ss_pred --cC--CCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC-c--------hHHHHHHHHhhhhhcc
Q 002870 680 --IS--NPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN-N--------ARIAGMLRNLSSYYYK 735 (872)
Q Consensus 680 --ag--t~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~-n--------~rv~~~lr~l~s~~~~ 735 (872)
++ +-...+...|.+..+|.|+.||-.|-|++-.+--..- . +.+..+-+.+..|.++
T Consensus 516 ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~~pl~~sd~~~dipsle~~l~~yIse 584 (898)
T COG5240 516 LNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACEPLFSSDELGDIPSLELELIGYISE 584 (898)
T ss_pred cCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhhhccccccccCCcchhHHhhheeecc
Confidence 11 2234566789999999999999999999887752211 1 2345666677676655
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=94.68 E-value=16 Score=45.64 Aligned_cols=332 Identities=13% Similarity=0.085 Sum_probs=160.3
Q ss_pred chhHHHHHHHhhhhccccchh-hHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCCh--hhHHHHHHhhcCCCCHHHHHH
Q 002870 408 EHGKMSAAASLGMILLWDVDS-GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC--DPALALLSEYVGREDACIRIG 484 (872)
Q Consensus 408 ~~~k~~A~aslGlI~~~~~~~-~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~--d~~~~lL~~~L~~~~~~v~~g 484 (872)
+..+..|.-+++.|...+.-+ ....+.+-+.+.++|+|-.|++|+.-++....+.. ......|.+.|.++++.+...
T Consensus 119 p~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~n 198 (746)
T PTZ00429 119 PVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASN 198 (746)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHH
Confidence 356677777777776554322 23345555667778888888887777765332211 113445555566666666555
Q ss_pred HHHHHHHHhcc---------------------------------------CCC---HHHHHHHHHHhcCCCCchHHHHHH
Q 002870 485 AIMGLGISYAG---------------------------------------TQN---DQIRHKLSTILNDAKSPLDVIAFS 522 (872)
Q Consensus 485 A~lGLGLay~G---------------------------------------t~~---~~i~e~L~~~L~d~~~~~e~~~~A 522 (872)
|+..|--+.-- +.+ .++.+.+.|.+...+ + -| ..+
T Consensus 199 Al~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N-~-AV-Vl~ 275 (746)
T PTZ00429 199 AAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQN-P-AV-VMG 275 (746)
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCC-H-HH-HHH
Confidence 55444332110 001 123344444443221 1 11 112
Q ss_pred HHHHHhHhcCCCCHHHHHHHHHH----HhhcCccccCchhHhHHHH-HHHhhhcCChhhHHHHHHHH-hhhhhhh-hhhh
Q 002870 523 AISLGLIYVGSCNEEVAQAIIFA----LMDRSESELGEPLTRLIPL-GLGLLYLGKQESVEATAEVS-KTFNEKI-RKYC 595 (872)
Q Consensus 523 aLALGLi~lGs~n~~~~e~ll~~----L~~~~~~~l~e~~~r~~~l-glgLl~~G~~e~a~~ll~~L-~~~~~~i-~r~~ 595 (872)
|.-+=+-+.-..+.+..+.+... |+.-.. .++-++++++ -+-++....++....-++.. ...+||. .|.-
T Consensus 276 Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s---s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~ 352 (746)
T PTZ00429 276 AIKVVANLASRCSQELIERCTVRVNTALLTLSR---RDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLE 352 (746)
T ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC---CCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHH
Confidence 22211111112233333332211 110000 1233555554 33344444444333333322 1223333 2221
Q ss_pred hHHHHHHhhhcCCCH-HHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhh-------------
Q 002870 596 DMTLLSCAYAGTGNV-LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQ------------- 661 (872)
Q Consensus 596 ~~~~~~lAyaGTGn~-~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~------------- 661 (872)
-+-+-+..+...|. .++++|.+|+.+ .+. ++++-++-+||-++..-|...+.|.+.+..|++
T Consensus 353 -KLeIL~~Lane~Nv~~IL~EL~eYa~d-~D~--ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vi 428 (746)
T PTZ00429 353 -KLRLLLKLVTPSVAPEILKELAEYASG-VDM--VFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAA 428 (746)
T ss_pred -HHHHHHHHcCcccHHHHHHHHHHHhhc-CCH--HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 12222222333343 577788888864 333 688889999988887655222333332222211
Q ss_pred ------------------------cCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhc---CCchHHHHHHHHHHHHHc
Q 002870 662 ------------------------YGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH---DTDSEVAMAAVISLGLIG 714 (872)
Q Consensus 662 ------------------------~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~---D~d~~Vr~~AiiAlGlV~ 714 (872)
-.+|..|.+..+.+|-.|-- -.++-+.|+++.+ +-+..||...+.+..=+.
T Consensus 429 k~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~--I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlf 506 (746)
T PTZ00429 429 KDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF--IENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMF 506 (746)
T ss_pred HHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhh--HhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHH
Confidence 12355777888888876432 2245677777763 345679888887777555
Q ss_pred CCCCc---hHHHHHHHHhhhhhccChhhHHHHHHHHhhhhc
Q 002870 715 SGTNN---ARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHM 752 (872)
Q Consensus 715 aGt~n---~rv~~~lr~l~s~~~~d~~~~f~~~lAqGll~~ 752 (872)
.-... ..+..+|+.+.++ ..||+.|=-+++-.-|+..
T Consensus 507 l~~p~~~~~~l~~vL~~~t~~-~~d~DVRDRA~~Y~rLLs~ 546 (746)
T PTZ00429 507 LRDPQGMEPQLNRVLETVTTH-SDDPDVRDRAFAYWRLLSK 546 (746)
T ss_pred hcCcHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHcC
Confidence 55442 2345555544433 4577766555555545544
No 40
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=93.95 E-value=2.5 Score=47.22 Aligned_cols=238 Identities=18% Similarity=0.152 Sum_probs=141.2
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCH-------HHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCH-------HHHHH
Q 002870 476 REDACIRIGAIMGLGISYAGTQND-------QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE-------EVAQA 541 (872)
Q Consensus 476 ~~~~~v~~gA~lGLGLay~Gt~~~-------~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~-------~~~e~ 541 (872)
......+..|+-+|-=+..||.+. ..+..+.+.|+++ ..++.-.|..|||-|.=.|... -+.+.
T Consensus 126 ~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~--~~~V~eQavWALGNiAGDS~~~RD~vL~~galep 203 (526)
T COG5064 126 IQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST--EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEP 203 (526)
T ss_pred cchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc--hHHHHHHHHHHhccccCCchhHHHHHHhcCchHH
Confidence 344567777777777777777643 3455666666655 2334445777777763111100 13445
Q ss_pred HHHHHhhcCccccCchhHhHHHHHHHhhhcCChh--------hHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHH
Q 002870 542 IIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE--------SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKV 613 (872)
Q Consensus 542 ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e--------~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i 613 (872)
++..+.+ +..|-++.|-+.--|+=++-|+.- ++-.++..|.-..||-.-.-++++ +.|..-|.+++|
T Consensus 204 lL~ll~s---s~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WA--iSYlsDg~~E~i 278 (526)
T COG5064 204 LLGLLLS---SAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWA--ISYLSDGPNEKI 278 (526)
T ss_pred HHHHHHh---ccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHH--HHHhccCcHHHH
Confidence 5554432 112446677766666666666542 233344445545555555555554 679999999988
Q ss_pred HHHHHhhc--------ccCCCCccchhhhHhHhhhhhhcchhhHh-----HHHHHHHHHhhcCChhHHhHHHHHHhhhcc
Q 002870 614 QNLLGHCA--------QHHEKGEAYQGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLALGLLCI 680 (872)
Q Consensus 614 ~~LL~~~~--------~~~~d~~~vrr~Avl~iglI~~~~~~g~e-----~~~~il~~L~~~~~~~VR~ga~lALGL~~a 680 (872)
+..|.... +|.+ ..++.-|+=++|-|..|++.-.+ -+...|..|+.+.-..||.-+|+.+.=+-|
T Consensus 279 ~avld~g~~~RLvElLs~~s--a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA 356 (526)
T COG5064 279 QAVLDVGIPGRLVELLSHES--AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA 356 (526)
T ss_pred HHHHhcCCcHHHHHHhcCcc--ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc
Confidence 86654321 2222 25677777788888777762111 133445555666556899999999998888
Q ss_pred CCCch-------HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc-hHH
Q 002870 681 SNPKV-------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN-ARI 722 (872)
Q Consensus 681 gt~~~-------~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n-~rv 722 (872)
||-.. +.+..|-++++-.+-..+--|+-|..=.+.|.++ |.+
T Consensus 357 Gnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~ 406 (526)
T COG5064 357 GNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDI 406 (526)
T ss_pred CCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchH
Confidence 87532 2233455555666667777888888777777765 433
No 41
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.31 E-value=26 Score=43.06 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=72.5
Q ss_pred HHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHh
Q 002870 615 NLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL 694 (872)
Q Consensus 615 ~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l 694 (872)
+||..+..|.. .+||+|+=..|+|+ +-+|-..+..++-.-+...+-+-|-+..+|++++.--++-..++-.|..=
T Consensus 929 eLlelLkahkK---~iRRaa~nTfG~Ia--kaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmne 1003 (1172)
T KOG0213|consen 929 ELLELLKAHKK---EIRRAAVNTFGYIA--KAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNE 1003 (1172)
T ss_pred HHHHHHHHHHH---HHHHHHHhhhhHHH--HhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhh
Confidence 56666666644 69999999999985 55665666666555456667788988999999887667777777666544
Q ss_pred hcCCchHHHHHHHHHHHHHcCCCC
Q 002870 695 SHDTDSEVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 695 ~~D~d~~Vr~~AiiAlGlV~aGt~ 718 (872)
=.-|..+|.++.+=||.+..--++
T Consensus 1004 YrtPe~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen 1004 YRTPEANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred ccCchhHHHHhHHHHHHHHHHHHH
Confidence 456888999999999988754333
No 42
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.13 E-value=4.4 Score=48.79 Aligned_cols=311 Identities=17% Similarity=0.190 Sum_probs=160.3
Q ss_pred HHHHHHHhhhhccccchhh----HHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhh----HHHHHHhhcCCCCHHHH
Q 002870 411 KMSAAASLGMILLWDVDSG----LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDP----ALALLSEYVGREDACIR 482 (872)
Q Consensus 411 k~~A~aslGlI~~~~~~~~----l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~----~~~lL~~~L~~~~~~v~ 482 (872)
|-..+|+|++.-.--.++- +.+|+..|.+..=.+|-.+++|+|.|.-|-++-.-| .+.+|...|+++.+.+|
T Consensus 372 RkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVR 451 (885)
T KOG2023|consen 372 RKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVR 451 (885)
T ss_pred hhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCcccee
Confidence 4455566776554322333 344455555555557888888999888886553322 45666666778888888
Q ss_pred HHHHHHHHHH--hc--cCCCHHHHHHHHHH---hcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccC
Q 002870 483 IGAIMGLGIS--YA--GTQNDQIRHKLSTI---LNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELG 555 (872)
Q Consensus 483 ~gA~lGLGLa--y~--Gt~~~~i~e~L~~~---L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~ 555 (872)
.-.|--|+=- ++ -+.++-....|.++ +.|+ +-.|+-+|+.|..-+ .+++.++++.+|-
T Consensus 452 sITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~--NK~VQEAAcsAfAtl-----eE~A~~eLVp~l~-------- 516 (885)
T KOG2023|consen 452 SITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDS--NKKVQEAACSAFATL-----EEEAGEELVPYLE-------- 516 (885)
T ss_pred eeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcc--cHHHHHHHHHHHHHH-----HHhccchhHHHHH--------
Confidence 8777776631 11 11112222222222 2354 778888888887654 3344444444431
Q ss_pred chhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCC-CHHH-HHHHHHhhcccC----CCCcc
Q 002870 556 EPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTG-NVLK-VQNLLGHCAQHH----EKGEA 629 (872)
Q Consensus 556 e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTG-n~~~-i~~LL~~~~~~~----~d~~~ 629 (872)
.+-.- +..++-.|.+.+-. -+. |.| +.++.. +|.. |..+ ||.|+.-+.+.- ++|.+
T Consensus 517 -~IL~~--l~~af~kYQ~KNLl-ILY-------DAI----gtlAds---vg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKd 578 (885)
T KOG2023|consen 517 -YILDQ--LVFAFGKYQKKNLL-ILY-------DAI----GTLADS---VGHALNKPAYIQILMPPLIEKWELLSDSDKD 578 (885)
T ss_pred -HHHHH--HHHHHHHHhhccee-hHH-------HHH----HHHHHH---HHHhcCcHHHHHHhccHHHHHHHhcCcccch
Confidence 11111 12234444443310 011 111 111222 1111 2222 454443322211 11111
Q ss_pred c----h----hhhHhHhhhhhhcchhhHhHHHHHHHHH----hhcCC-h--------------hHHhHHHHHHhhhccC-
Q 002870 630 Y----Q----GPAVLGIAMVAMAEELGLEMAIRSLEHL----LQYGE-Q--------------NIRRAVPLALGLLCIS- 681 (872)
Q Consensus 630 v----r----r~Avl~iglI~~~~~~g~e~~~~il~~L----~~~~~-~--------------~VR~ga~lALGL~~ag- 681 (872)
+ . -+..++-||.-|..|+ .+.+.+++.+- +...+ | ..-.|.+=+|| .-.
T Consensus 579 LfPLLEClSsia~AL~~gF~P~~~~V-y~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg--~~ie 655 (885)
T KOG2023|consen 579 LFPLLECLSSIASALGVGFLPYAQPV-YQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLG--SHIE 655 (885)
T ss_pred HHHHHHHHHHHHHHHhccccccCHHH-HHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhh--hchH
Confidence 1 1 2456788888888885 57788887632 22211 1 22334443443 110
Q ss_pred --CCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC---chHHHHHHHHhhhhh-ccChhhHHHHHHHHhhhhcCCC
Q 002870 682 --NPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN---NARIAGMLRNLSSYY-YKDANLLFCVRIAQGLVHMGKG 755 (872)
Q Consensus 682 --t~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~---n~rv~~~lr~l~s~~-~~d~~~~f~~~lAqGll~~G~g 755 (872)
-.+.++.++|...+.|..++|||.|..=||=+-.-.. -|.++.++.-+.... ..+..+-.-+.-|.|-+.+-.|
T Consensus 656 ~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g 735 (885)
T KOG2023|consen 656 PLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMG 735 (885)
T ss_pred HHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc
Confidence 0233478889999999999999998776665433322 244556665554211 1223455667888898877655
Q ss_pred ce
Q 002870 756 LL 757 (872)
Q Consensus 756 ~~ 757 (872)
.-
T Consensus 736 ~~ 737 (885)
T KOG2023|consen 736 LK 737 (885)
T ss_pred hh
Confidence 43
No 43
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=92.90 E-value=19 Score=40.41 Aligned_cols=261 Identities=14% Similarity=0.118 Sum_probs=139.9
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 002870 449 LLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-QIRHKLSTILNDAKSPLDVIAFSAISLG 527 (872)
Q Consensus 449 llaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~-~i~e~L~~~L~d~~~~~e~~~~AaLALG 527 (872)
..|+.....|.. +.++..+...+...... ..+...+|.+|...++. +..+.+...+..+.........+...||
T Consensus 40 ~~g~~~~~~~~~---~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 40 FKGLNFLLNEQP---DKAIDLFIEMLKVDPET--VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred HHHHHHHhcCCh---HHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 344444444443 34888888877543222 23556677777666653 4445555444433222222234667889
Q ss_pred hHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhh-hhhhh--hhhHHHHHHhh
Q 002870 528 LIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFN-EKIRK--YCDMTLLSCAY 604 (872)
Q Consensus 528 Li~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~-~~i~r--~~~~~~~~lAy 604 (872)
.+++..++.+.+...+..+.+..+ ....-...++..+...|+-+++...++.+.... .+... ......++..|
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGD----FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 999988887777776666543211 112223334555666677777777776655432 21111 11223567778
Q ss_pred hcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCC-
Q 002870 605 AGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP- 683 (872)
Q Consensus 605 aGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~- 683 (872)
...|+.....+.+.-+.+...+ ..+....+|..+...|+. +.+.+.+....+. +|.....+-..++.++...+
T Consensus 191 ~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 191 LARGDLDAARALLKKALAADPQ--CVRASILLGDLALAQGDY---AAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHCcC--CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCC
Confidence 8899976555555444332222 445555666666677776 7788888887664 33332222334444444434
Q ss_pred chHHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCCc-hHHHHHHHH
Q 002870 684 KVNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTNN-ARIAGMLRN 728 (872)
Q Consensus 684 ~~~aid~L~~l~~-D~d~~Vr~~AiiAlGlV~aGt~n-~rv~~~lr~ 728 (872)
..+++..+.++.. +|+..+. ..+|.+....++ .+...++++
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~----~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLL----LALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHH----HHHHHHHHHhCCHHHHHHHHHH
Confidence 4456667776543 4554332 344444444443 233444544
No 44
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.73 E-value=2.1 Score=53.21 Aligned_cols=156 Identities=23% Similarity=0.285 Sum_probs=96.7
Q ss_pred HHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHH
Q 002870 611 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDT 690 (872)
Q Consensus 611 ~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~ 690 (872)
++..-|++.|... +| -.|....=.+|.+..-+| +....-+..++.++.|+.|.-+--|+- |.=+-++.-+|.
T Consensus 932 ~IW~lL~k~cE~~-ee--gtR~vvAECLGkL~l~ep---esLlpkL~~~~~S~a~~~rs~vvsavK--fsisd~p~~id~ 1003 (1233)
T KOG1824|consen 932 KIWALLFKHCECA-EE--GTRNVVAECLGKLVLIEP---ESLLPKLKLLLRSEASNTRSSVVSAVK--FSISDQPQPIDP 1003 (1233)
T ss_pred HHHHHHHHhcccc-hh--hhHHHHHHHhhhHHhCCh---HHHHHHHHHHhcCCCcchhhhhhheee--eeecCCCCccCH
Confidence 3444556666432 33 578888889999999999 666666788889999999988777655 444555666665
Q ss_pred HH--------HhhcCCchHHHHHHHHHHHHHcCCCCch-HHHHHHHHhhhhhccChhh-HHHHHHHHhhhhcCCCceeec
Q 002870 691 LS--------RLSHDTDSEVAMAAVISLGLIGSGTNNA-RIAGMLRNLSSYYYKDANL-LFCVRIAQGLVHMGKGLLTLN 760 (872)
Q Consensus 691 L~--------~l~~D~d~~Vr~~AiiAlGlV~aGt~n~-rv~~~lr~l~s~~~~d~~~-~f~~~lAqGll~~G~g~~tls 760 (872)
+. ++..|+|..|||.|+.++--+ -.|-| -|..+|-.|---.+.+... +=-+ +.+-+.
T Consensus 1004 ~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSa--ahNKpslIrDllpeLLp~Ly~eTkvrkelI-----------reVeMG 1070 (1233)
T KOG1824|consen 1004 LLKQQIGDFLKLLRDPDLEVRRVALVVLNSA--AHNKPSLIRDLLPELLPLLYSETKVRKELI-----------REVEMG 1070 (1233)
T ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHHHH--HccCHhHHHHHHHHHHHHHHHhhhhhHhhh-----------hhhccc
Confidence 43 346899999999998876554 33322 3455555543322111111 0011 223444
Q ss_pred ccCC--CCC-CCChHHHHHHHHHHHhhccc
Q 002870 761 PYHS--DRF-LLSPTALAGIVTTLFACLDM 787 (872)
Q Consensus 761 p~~s--d~~-~~~~~a~agLl~~l~~~~d~ 787 (872)
||.. |.| -+++.|+=+|.+.+=+++|-
T Consensus 1071 PFKH~VDdgLd~RKaaFEcmytLLdscld~ 1100 (1233)
T KOG1824|consen 1071 PFKHTVDDGLDLRKAAFECMYTLLDSCLDR 1100 (1233)
T ss_pred CccccccchHHHHHHHHHHHHHHHHhhhhh
Confidence 5421 223 36788888888888776654
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=92.67 E-value=35 Score=42.88 Aligned_cols=178 Identities=12% Similarity=0.038 Sum_probs=99.0
Q ss_pred hhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCc--cchhhhHhHhhhhhhcc
Q 002870 568 LLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE--AYQGPAVLGIAMVAMAE 645 (872)
Q Consensus 568 Ll~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~--~vrr~Avl~iglI~~~~ 645 (872)
|+..|+-+++...++.+...+++...+...+ .+.+|..+|+.......+.-+........ .....+-++.++.-.++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~-la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRW-VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHH-HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 4455666777777777776554444443333 47899999998766666554433211100 11233444445555555
Q ss_pred hhhHhHHHHHHHHHhhcCC------------hh---HHhHHHHHHhhhccCCCchHHHHHHHHhh-cCCchHHHHHHHHH
Q 002870 646 ELGLEMAIRSLEHLLQYGE------------QN---IRRAVPLALGLLCISNPKVNVMDTLSRLS-HDTDSEVAMAAVIS 709 (872)
Q Consensus 646 ~~g~e~~~~il~~L~~~~~------------~~---VR~ga~lALGL~~agt~~~~aid~L~~l~-~D~d~~Vr~~AiiA 709 (872)
. +.+.+.+..+.+... |+ ...-.-+|..+...| -..++++.|.++. .+|++ ..+.+.
T Consensus 326 ~---~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g-~~~eA~~~l~~al~~~P~n---~~l~~~ 398 (765)
T PRK10049 326 Y---PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN-DLPQAEMRARELAYNAPGN---QGLRID 398 (765)
T ss_pred H---HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC---HHHHHH
Confidence 5 777778777765421 11 111122233333332 2356778887764 45665 246788
Q ss_pred HHHHcCCCCch-HHHHHHHHhhhhhccChhhHHHHHHHHhhhhcCCCce
Q 002870 710 LGLIGSGTNNA-RIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLL 757 (872)
Q Consensus 710 lGlV~aGt~n~-rv~~~lr~l~s~~~~d~~~~f~~~lAqGll~~G~g~~ 757 (872)
+|.+....+++ +..+.+++... .+|.. ..+.+++|...++.|..
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~---l~Pd~-~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEV---LEPRN-INLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHh---hCCCC-hHHHHHHHHHHHHhCCH
Confidence 88888777754 44555555444 35542 23666777777776654
No 46
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.43 E-value=2.4 Score=51.17 Aligned_cols=175 Identities=10% Similarity=0.033 Sum_probs=107.3
Q ss_pred HhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCC-CccchhhhHhHhhhhhhc-
Q 002870 567 GLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEK-GEAYQGPAVLGIAMVAMA- 644 (872)
Q Consensus 567 gLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d-~~~vrr~Avl~iglI~~~- 644 (872)
+|.+.|+++.+..+.+.+...+-+-......+...++++-+-+...++.++.+|.+.... ...++..++++.|-+...
T Consensus 349 al~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~ 428 (574)
T smart00638 349 AVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRY 428 (574)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 577788888888888877764433333344455555656678888888888888754221 125677788887765432
Q ss_pred ---chh-----hHhHHHHHHHHHh---hcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhc---CCchHHHHHHHHHH
Q 002870 645 ---EEL-----GLEMAIRSLEHLL---QYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH---DTDSEVAMAAVISL 710 (872)
Q Consensus 645 ---~~~-----g~e~~~~il~~L~---~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~---D~d~~Vr~~AiiAl 710 (872)
.+. -.+-++.+.+.|. ...+...+....-|||=+ |.+.++..|.++.. +...++|..|+.||
T Consensus 429 c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~----g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 429 CVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA----GHPSSIKVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred hcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc----CChhHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 110 0122222333232 235666777778888855 66778888888865 34567999999999
Q ss_pred HHHcCCCCchHHHHHHHHhhhhhccChhhHHHHHHH
Q 002870 711 GLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIA 746 (872)
Q Consensus 711 GlV~aGt~n~rv~~~lr~l~s~~~~d~~~~f~~~lA 746 (872)
.-+.. ....++...|-.+.....+++..|+++-++
T Consensus 505 r~~a~-~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~ 539 (574)
T smart00638 505 RNLAK-RDPRKVQEVLLPIYLNRAEPPEVRMAAVLV 539 (574)
T ss_pred HHHHH-hCchHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 85533 223355555555444445666677666654
No 47
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.28 E-value=0.83 Score=41.92 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=52.1
Q ss_pred cchhhhHhHhhhhhhcchhhHh-----HHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch-------HHHHHHHHhhc
Q 002870 629 AYQGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSRLSH 696 (872)
Q Consensus 629 ~vrr~Avl~iglI~~~~~~g~e-----~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~-------~aid~L~~l~~ 696 (872)
.+|..++.+++-++.+.|.... .+.+.+-.++.+.|+.+|..++.+|+-++.+.+.. .++..|.++.+
T Consensus 22 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~ 101 (120)
T cd00020 22 NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD 101 (120)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHh
Confidence 5677777777777666332111 12223334456677888888888888887665321 23555666677
Q ss_pred CCchHHHHHHHHHHHHH
Q 002870 697 DTDSEVAMAAVISLGLI 713 (872)
Q Consensus 697 D~d~~Vr~~AiiAlGlV 713 (872)
+.+..++..|+.+++-+
T Consensus 102 ~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 102 SSNEDIQKNATGALSNL 118 (120)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777776666543
No 48
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.22 E-value=8.4 Score=47.32 Aligned_cols=268 Identities=14% Similarity=0.114 Sum_probs=138.9
Q ss_pred HHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccC------CCHHHHH
Q 002870 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGT------QNDQIRH 503 (872)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt------~~~~i~e 503 (872)
+..|+.++.+.++.+--=|..++--...-..++--|+...|+..++++....|..|..-|--+.+-. ||.|
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~e--- 323 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLD--- 323 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchh---
Confidence 3445555555565554444444433333333444578889999999999999999998887766543 3333
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc-CccccCchhH-hHHHHHHHhhhcCChhhHHHHH
Q 002870 504 KLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR-SESELGEPLT-RLIPLGLGLLYLGKQESVEATA 581 (872)
Q Consensus 504 ~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~-~~~~l~e~~~-r~~~lglgLl~~G~~e~a~~ll 581 (872)
|-+.+.|++-+ .|.+|+-.. +-||++.-++.|++.+..- ++....-|++ -=+..++.+.|-.+.......+
T Consensus 324 -lE~lItd~Nrs-----Iat~AITtL-LKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL 396 (865)
T KOG1078|consen 324 -LESLITDSNRS-----IATLAITTL-LKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL 396 (865)
T ss_pred -HHhhhcccccc-----hhHHHHHHH-HHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence 33444554322 366776665 5788888888887754321 1211011111 1112233333333222222222
Q ss_pred H-HHhhhhhhhhhhhhHHHHHHhhhcC-CCHHHHHHHHHhhcccCCCCccchhhhHhHhhhh-----hhcchhhHhHHHH
Q 002870 582 E-VSKTFNEKIRKYCDMTLLSCAYAGT-GNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMV-----AMAEELGLEMAIR 654 (872)
Q Consensus 582 ~-~L~~~~~~i~r~~~~~~~~lAyaGT-Gn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI-----~~~~~~g~e~~~~ 654 (872)
. .|++ +. -..|-...+..+.=+-. ....+-..|.|.|. ..+|- ..+..++-=+.++ -..+| +.-.|
T Consensus 397 ~~~Lr~-eG-g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCe-fIEDc-e~~~i~~rILhlLG~EgP~a~~P---skyir 469 (865)
T KOG1078|consen 397 SNMLRE-EG-GFEFKRAIVDAIIDIIEENPDSKERGLEHLCE-FIEDC-EFTQIAVRILHLLGKEGPKAPNP---SKYIR 469 (865)
T ss_pred HHHHHh-cc-CchHHHHHHHHHHHHHHhCcchhhHHHHHHHH-HHHhc-cchHHHHHHHHHHhccCCCCCCc---chhhH
Confidence 1 1221 10 01111111111110001 11112223334432 22211 1222222222222 12223 22333
Q ss_pred HHHHHhhcCChhHHhHHHHHHhhhccCC--CchHHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 002870 655 SLEHLLQYGEQNIRRAVPLALGLLCISN--PKVNVMDTLSRLSHDTDSEVAMAAVISLGLIG 714 (872)
Q Consensus 655 il~~L~~~~~~~VR~ga~lALGL~~agt--~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~ 714 (872)
.+-...+-.|++||.++--||+-..++. ..+.+.-+|.+...|+|+.||-.|-+++-...
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3333445578899999999999887664 45678889999999999999999999988876
No 49
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.04 E-value=1.3 Score=52.22 Aligned_cols=169 Identities=20% Similarity=0.249 Sum_probs=106.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHH---------HHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchh
Q 002870 577 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL---------KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEEL 647 (872)
Q Consensus 577 a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~---------~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~ 647 (872)
++.+++.|...++|-.++-+++++ .++.+|+.+ ++-.+.+...+ .++ +|+.-||.+||=|+-..|.
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWaL--TnIAsgtse~T~~vv~agavp~fi~Ll~s-~~~--~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWAL--TNIASGTSEQTKVVVDAGAVPIFIQLLSS-PSA--DVREQAVWALGNIAGDSPD 185 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHHH--HHHhcCchhhccccccCCchHHHHHHhcC-CcH--HHHHHHHHHHhccccCChH
Confidence 456667776666777777766653 344444432 22234454433 343 7999999999999866552
Q ss_pred hHhHHHH--HHHH---HhhcCCh-hHHhHHHHHHhhhccCC-CchH------HHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 002870 648 GLEMAIR--SLEH---LLQYGEQ-NIRRAVPLALGLLCISN-PKVN------VMDTLSRLSHDTDSEVAMAAVISLGLIG 714 (872)
Q Consensus 648 g~e~~~~--il~~---L~~~~~~-~VR~ga~lALGL~~agt-~~~~------aid~L~~l~~D~d~~Vr~~AiiAlGlV~ 714 (872)
-.+-+.+ .+.. ++...++ ...+.+.++|.-+|-|. |.+. ++..|.++.+..|..|...|.-|+.-+.
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 2222221 1222 2233333 57888999999999987 5443 5667889999999999999999999999
Q ss_pred CCCCc-----------hHHHHHHHHhhhhhccChhhHHHHHHHHhhhhcCCCc
Q 002870 715 SGTNN-----------ARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGL 756 (872)
Q Consensus 715 aGt~n-----------~rv~~~lr~l~s~~~~d~~~~f~~~lAqGll~~G~g~ 756 (872)
.|+|+ +|+..+|.. .++.+.--+-.|.|=+-.|...
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~------~~~~v~~PaLRaiGNIvtG~d~ 312 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGH------SSPKVVTPALRAIGNIVTGSDE 312 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcC------CCcccccHHHhhccceeeccHH
Confidence 99985 344444443 3444444455555554444433
No 50
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.55 E-value=48 Score=40.15 Aligned_cols=192 Identities=14% Similarity=0.132 Sum_probs=112.5
Q ss_pred HHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHh
Q 002870 615 NLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL 694 (872)
Q Consensus 615 ~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l 694 (872)
+|+..+.++.. .+||+|+-..|+| ++-+|-+.+..++-.-+...+-+-|-+..+|+|+..--+|-..++-+|..=
T Consensus 734 eLvd~Lks~nK---eiRR~A~~tfG~I--s~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~d 808 (975)
T COG5181 734 ELVDSLKSWNK---EIRRNATETFGCI--SRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSD 808 (975)
T ss_pred HHHHHHHHhhH---HHHHhhhhhhhhH--HhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhc
Confidence 45555555433 6899999999998 466666767776655556677888999999999987666777777766554
Q ss_pred hcCCchHHHHHHHHHHHHHcCCCCchH---HHHHHHHhhhh-hccChh-----hHHHHHHHHhhhhcCCCcee-------
Q 002870 695 SHDTDSEVAMAAVISLGLIGSGTNNAR---IAGMLRNLSSY-YYKDAN-----LLFCVRIAQGLVHMGKGLLT------- 758 (872)
Q Consensus 695 ~~D~d~~Vr~~AiiAlGlV~aGt~n~r---v~~~lr~l~s~-~~~d~~-----~~f~~~lAqGll~~G~g~~t------- 758 (872)
-..|..+|.++.+=||.+..--+++.. |-.+.--|+-. ..+||. .-.-.++++| |-|.|-..
T Consensus 809 Y~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Ln--c~gtg~eda~IHLlN 886 (975)
T COG5181 809 YETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLN--CPGTGDEDAAIHLLN 886 (975)
T ss_pred ccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcC--CCCcccHHHHHHHHH
Confidence 456889999999999988755444321 11111111111 124553 2344567777 66666542
Q ss_pred -ecccCCCC-CCCChH---HHHHHHH----------HHHhhccccccccCchh--H--HHHHHhhhcccceeee
Q 002870 759 -LNPYHSDR-FLLSPT---ALAGIVT----------TLFACLDMKAVIVGKYH--Y--VLYFLVLAMQPRMLLT 813 (872)
Q Consensus 759 -lsp~~sd~-~~~~~~---a~agLl~----------~l~~~~d~~~~i~~~~h--~--l~~~l~lA~~Pr~li~ 813 (872)
|.|-.-+. -++-+. .+=|+.. +-+..+-|.+++-+.|| | +.+|.+-||.|-+=++
T Consensus 887 llwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~~damvp~ypv~ 960 (975)
T COG5181 887 LLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDSDAMVPCYPVE 960 (975)
T ss_pred HhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhccCchHHHHHHHHHHHhhhhhcccccccccccCC
Confidence 22211111 111111 1111111 11344555555556666 3 7788888888876554
No 51
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.18 E-value=9.1 Score=46.23 Aligned_cols=208 Identities=15% Similarity=0.154 Sum_probs=125.9
Q ss_pred cchhHHHHHHHhhccCCCChHHHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccC-CccccccCCCCCCCCCCCc
Q 002870 323 LSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDKLMTVPSDASSGGSSGN 401 (872)
Q Consensus 323 l~~~~~~~~~~l~i~~~k~~~~iyK~~l~~~r~~~~~~~dsa~~~la~~~~nafvnaG~~-~D~~l~~~~~~~~~~~~~~ 401 (872)
....|..+.+.+..++-+..+.+|+..-. .. ...-..|..|+..+|+. +-+++..
T Consensus 309 ~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-----------~~~r~~~~Dal~~~GT~~a~~~i~~------------ 364 (574)
T smart00638 309 AAAKFLRLVRLLRTLSEEQLEQLWRQLYE-KK-----------KKARRIFLDAVAQAGTPPALKFIKQ------------ 364 (574)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHh-CC-----------HHHHHHHHHHHHhcCCHHHHHHHHH------------
Confidence 45678888888888888888888776421 10 23346788999999988 5555543
Q ss_pred cccccCchhHHHHHHH---hhhhccccchhhHHhHhhhcc----CCCchhHHHHHHHHHHhhcCCCCCh--------hhH
Q 002870 402 WLFKNKEHGKMSAAAS---LGMILLWDVDSGLAQIDKYFH----STDNHVIAGALLGVGIVNCGIRNDC--------DPA 466 (872)
Q Consensus 402 wl~k~~~~~k~~A~as---lGlI~~~~~~~~l~~l~~yL~----s~~~~~k~GAllaLGli~~G~~~e~--------d~~ 466 (872)
||.+.+--+.-.+.+- ++.+.. -..+.++.+.+.+. ..+.+.+.++++++|..-.....+. +..
T Consensus 365 ~i~~~~~~~~ea~~~~~~~~~~~~~-Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~ 443 (574)
T smart00638 365 WIKNKKITPLEAAQLLAVLPHTARY-PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEEL 443 (574)
T ss_pred HHHcCCCCHHHHHHHHHHHHHhhhc-CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHH
Confidence 7766653322222222 222211 22334555544443 3577899999999996643211111 123
Q ss_pred HHHHHhhcC----CCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHH
Q 002870 467 LALLSEYVG----REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQA 541 (872)
Q Consensus 467 ~~lL~~~L~----~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ 541 (872)
...|...|. ..+...+..++-|||= .+.+.....|.|.+. +...+..++.+|..||-.+- =.+...+.+.
T Consensus 444 ~~~l~~~l~~~~~~~~~~~~~~~LkaLGN----~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a-~~~p~~v~~~ 518 (574)
T smart00638 444 LKYLHELLQQAVSKGDEEEIQLYLKALGN----AGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLA-KRDPRKVQEV 518 (574)
T ss_pred HHHHHHHHHHHHhcCCchheeeHHHhhhc----cCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH-HhCchHHHHH
Confidence 334444332 3455667788999993 356788999999997 65566677778889988541 1355667777
Q ss_pred HHHHHhhcCccccCchhHhHHHH
Q 002870 542 IIFALMDRSESELGEPLTRLIPL 564 (872)
Q Consensus 542 ll~~L~~~~~~~l~e~~~r~~~l 564 (872)
++..++...+ +.=.|.+|+
T Consensus 519 l~~i~~n~~e----~~EvRiaA~ 537 (574)
T smart00638 519 LLPIYLNRAE----PPEVRMAAV 537 (574)
T ss_pred HHHHHcCCCC----ChHHHHHHH
Confidence 7887654322 223566553
No 52
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.96 E-value=5 Score=48.79 Aligned_cols=209 Identities=17% Similarity=0.212 Sum_probs=119.7
Q ss_pred hhHHHHHHHhhccCCCChHHHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccC-CccccccCCCCCCCCCCCccc
Q 002870 325 EGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDKLMTVPSDASSGGSSGNWL 403 (872)
Q Consensus 325 ~~~~~~~~~l~i~~~k~~~~iyK~~l~~~r~~~~~~~dsa~~~la~~~~nafvnaG~~-~D~~l~~~~~~~~~~~~~~wl 403 (872)
..|..+.+.+..++-+....+|+...... .....-..|.-|+..+|+. +-.++.. ||
T Consensus 347 ~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~----------~~~~~r~~~lDal~~aGT~~av~~i~~------------~I 404 (618)
T PF01347_consen 347 SKFSRLVRLLRTLSYEDLEELYKQLKSKS----------KKEQARKIFLDALPQAGTNPAVKFIKD------------LI 404 (618)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHTTS-------------HHHHHHHHHHHHHH-SHHHHHHHHH------------HH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhc----------cHHHHHHHHHHHHHHcCCHHHHHHHHH------------HH
Confidence 45888888888888888888887653310 1122335788999999988 5555553 77
Q ss_pred cccCchh--HHHHHHHhhhhccccchhhHHhHhhhcc----CCCchhHHHHHHHHHHhhcCCCCC--------------h
Q 002870 404 FKNKEHG--KMSAAASLGMILLWDVDSGLAQIDKYFH----STDNHVIAGALLGVGIVNCGIRND--------------C 463 (872)
Q Consensus 404 ~k~~~~~--k~~A~aslGlI~~~~~~~~l~~l~~yL~----s~~~~~k~GAllaLGli~~G~~~e--------------~ 463 (872)
.+.+--. -.....++...-.--..+-+..+.+.+. ..+.+.+..|++++|-........ .
T Consensus 405 ~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~ 484 (618)
T PF01347_consen 405 KSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCII 484 (618)
T ss_dssp HTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--
T ss_pred HcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhH
Confidence 6654322 2222333333221112233443333332 356789999999999764321111 1
Q ss_pred hhHHHHHHhhcC----CCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCC-CCchHHHHHHHHHHHhHhcCCCCHHH
Q 002870 464 DPALALLSEYVG----REDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDA-KSPLDVIAFSAISLGLIYVGSCNEEV 538 (872)
Q Consensus 464 d~~~~lL~~~L~----~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~-~~~~e~~~~AaLALGLi~lGs~n~~~ 538 (872)
+.+...|...+. ..+...+..++-|||=+ | .+.+.+.|.|++.+. ..+..++.+|..||..+ .-.+..++
T Consensus 485 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g--~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~-~~~~~~~v 559 (618)
T PF01347_consen 485 EKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--G--HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRL-AKHCPEKV 559 (618)
T ss_dssp GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTG-GGT-HHHH
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--C--CchhhHHHHhHhhhccccchHHHHHHHHHHHHH-hhcCcHHH
Confidence 123333444443 44667788899999954 4 468999999999865 56777888899999966 44555577
Q ss_pred HHHHHHHHhhcCccccCchhHhHHHH
Q 002870 539 AQAIIFALMDRSESELGEPLTRLIPL 564 (872)
Q Consensus 539 ~e~ll~~L~~~~~~~l~e~~~r~~~l 564 (872)
.+.++..+.+..+ +.=+|.+|+
T Consensus 560 ~~~l~~I~~n~~e----~~EvRiaA~ 581 (618)
T PF01347_consen 560 REILLPIFMNTTE----DPEVRIAAY 581 (618)
T ss_dssp HHHHHHHHH-TTS-----HHHHHHHH
T ss_pred HHHHHHHhcCCCC----ChhHHHHHH
Confidence 7888887765432 222676664
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=89.67 E-value=36 Score=41.06 Aligned_cols=208 Identities=12% Similarity=-0.012 Sum_probs=100.8
Q ss_pred HHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHH
Q 002870 500 QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 578 (872)
Q Consensus 500 ~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~ 578 (872)
+..+.+...+. |+. +.+ +-..+|.++...++.+.+...++..++..++ . ..-...+|..+...|+.+++.
T Consensus 322 ~A~~~~~~Al~ldP~-~~~----a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~-~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 322 KAKEHAIKATELDHN-NPQ----ALGLLGLINTIHSEYIVGSLLFKQANLLSPI---S-ADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred HHHHHHHHHHhcCCC-CHH----HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---C-HHHHHHHHHHHHHCCCHHHHH
Confidence 34444455554 432 223 3445666666666655555555544333222 1 112334566777788887777
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCH-HHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHH
Q 002870 579 ATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV-LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLE 657 (872)
Q Consensus 579 ~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~-~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~ 657 (872)
..++.....+..... ..+..+.++.-.|+. +++..+.+.......+ .......+|..+...|+. +.+...+.
T Consensus 393 ~~~~~Al~l~P~~~~--~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~--~~~~~~~la~~l~~~G~~---~eA~~~~~ 465 (553)
T PRK12370 393 QTINECLKLDPTRAA--AGITKLWITYYHTGIDDAIRLGDELRSQHLQD--NPILLSMQVMFLSLKGKH---ELARKLTK 465 (553)
T ss_pred HHHHHHHhcCCCChh--hHHHHHHHHHhccCHHHHHHHHHHHHHhcccc--CHHHHHHHHHHHHhCCCH---HHHHHHHH
Confidence 766665543221111 111222223335653 3444433332221111 223345566666666765 66777777
Q ss_pred HHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCC---chHHHHHHHHHHHHHcCCCCchHHHHHHHHhhh
Q 002870 658 HLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT---DSEVAMAAVISLGLIGSGTNNARIAGMLRNLSS 731 (872)
Q Consensus 658 ~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~---d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~s 731 (872)
.+.... | -...+...++-.+++.++ ++...|.++.... ....+. +.+|.+..++++-+.+++++.+
T Consensus 466 ~~~~~~-~-~~~~~~~~l~~~~~~~g~-~a~~~l~~ll~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~ 534 (553)
T PRK12370 466 EISTQE-I-TGLIAVNLLYAEYCQNSE-RALPTIREFLESEQRIDNNPGL-----LPLVLVAHGEAIAEKMWNKFKN 534 (553)
T ss_pred Hhhhcc-c-hhHHHHHHHHHHHhccHH-HHHHHHHHHHHHhhHhhcCchH-----HHHHHHHHhhhHHHHHHHHhhc
Confidence 665432 2 123333444545555553 5555555543221 111111 5566666667777777776544
No 54
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.58 E-value=8.3 Score=43.58 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=53.8
Q ss_pred chhHHHHHHHHHHhhcCCCCChh-hHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHH--------HHHHHHHHhcCC
Q 002870 442 NHVIAGALLGVGIVNCGIRNDCD-PALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQ--------IRHKLSTILNDA 512 (872)
Q Consensus 442 ~~~k~GAllaLGli~~G~~~e~d-~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~--------i~e~L~~~L~d~ 512 (872)
.+--.|+++++--+.-+.+.-.. -.+..|...+++.+.-+|.=++-++|.+.+.-.++. ++..|...+.|.
T Consensus 184 qrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~ 263 (550)
T KOG4224|consen 184 QRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG 263 (550)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC
Confidence 45556777776544332211000 034566777888888899989999999877654432 444555554444
Q ss_pred CCchHHHHHHHHHHHhH
Q 002870 513 KSPLDVIAFSAISLGLI 529 (872)
Q Consensus 513 ~~~~e~~~~AaLALGLi 529 (872)
+..+.+.|++|||-+
T Consensus 264 --s~kvkcqA~lALrnl 278 (550)
T KOG4224|consen 264 --SDKVKCQAGLALRNL 278 (550)
T ss_pred --ChHHHHHHHHHHhhh
Confidence 445667899999987
No 55
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=89.13 E-value=1.5 Score=54.03 Aligned_cols=87 Identities=25% Similarity=0.335 Sum_probs=69.5
Q ss_pred ccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch----HHHHHHHHhhcCCchHHH
Q 002870 628 EAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV----NVMDTLSRLSHDTDSEVA 703 (872)
Q Consensus 628 ~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~----~aid~L~~l~~D~d~~Vr 703 (872)
+.+|..|.=.++.+-.++=+ +.+...+..+.++.+|.||+.|++|++=+|-=.++. -.++.|.-++.|+|+.|.
T Consensus 106 ~~iR~~AlR~ls~l~~~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi 183 (757)
T COG5096 106 EEIRGFALRTLSLLRVKELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVI 183 (757)
T ss_pred HHHHHHHHHHHHhcChHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHH
Confidence 47888888888887666554 566677778889999999999999999888322221 256778889999999999
Q ss_pred HHHHHHHHHHcCC
Q 002870 704 MAAVISLGLIGSG 716 (872)
Q Consensus 704 ~~AiiAlGlV~aG 716 (872)
.+|++++..+.-.
T Consensus 184 ~nAl~sl~~i~~e 196 (757)
T COG5096 184 ANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHhchh
Confidence 9999999999766
No 56
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=88.08 E-value=25 Score=39.31 Aligned_cols=51 Identities=27% Similarity=0.290 Sum_probs=35.6
Q ss_pred cchhhhHhHhhhhhhcchhh-----HhHHHHHHHHHhhcCChhHHhHHHHHHhhhc
Q 002870 629 AYQGPAVLGIAMVAMAEELG-----LEMAIRSLEHLLQYGEQNIRRAVPLALGLLC 679 (872)
Q Consensus 629 ~vrr~Avl~iglI~~~~~~g-----~e~~~~il~~L~~~~~~~VR~ga~lALGL~~ 679 (872)
.+..+|+-+-||++..-|.. .+.....|..++++.|..||-++.-+++++|
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 56777888888877554421 1223344555668889999999999999885
No 57
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=87.98 E-value=4.6 Score=49.12 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=94.9
Q ss_pred HhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhc-CCCHHHHHHHHHhhcccCC-CCccchhhhHhHhhhhhhc
Q 002870 567 GLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAG-TGNVLKVQNLLGHCAQHHE-KGEAYQGPAVLGIAMVAMA 644 (872)
Q Consensus 567 gLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaG-TGn~~~i~~LL~~~~~~~~-d~~~vrr~Avl~iglI~~~ 644 (872)
+|...|+++.+..+.+.+...+-+-.... -+...+++.- +-+.+.++.|+.+|..... ..+.++..|++++|-+.-.
T Consensus 387 al~~aGT~~av~~i~~~I~~~~~~~~ea~-~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~ 465 (618)
T PF01347_consen 387 ALPQAGTNPAVKFIKDLIKSKKLTDDEAA-QLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHK 465 (618)
T ss_dssp HHHHH-SHHHHHHHHHHHHTT-S-HHHHH-HHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCc
Confidence 46667888888888877776433333322 2333444444 6777888877777754321 1125777788887765433
Q ss_pred chhh---------------HhHHHHHHHHH---hhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCC---chHHH
Q 002870 645 EELG---------------LEMAIRSLEHL---LQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT---DSEVA 703 (872)
Q Consensus 645 ~~~g---------------~e~~~~il~~L---~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~---d~~Vr 703 (872)
--.. .+-++.+...| ...++..-+..+.-|||=+ |.+.+++.|.++..+. ..++|
T Consensus 466 ~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~----g~~~~i~~l~~~i~~~~~~~~~~R 541 (618)
T PF01347_consen 466 YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL----GHPESIPVLLPYIEGKEEVPHFIR 541 (618)
T ss_dssp HHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----T-GGGHHHHHTTSTTSS-S-HHHH
T ss_pred eeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc----CCchhhHHHHhHhhhccccchHHH
Confidence 1110 01122222333 2455667788888888865 5567899999987766 67899
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHhhhhhccChhhHHHHH
Q 002870 704 MAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVR 744 (872)
Q Consensus 704 ~~AiiAlGlV~aGt~n~rv~~~lr~l~s~~~~d~~~~f~~~ 744 (872)
..||-|+.-+ +-....++.+.+-.+..-..+++..|.+|-
T Consensus 542 ~~Ai~Alr~~-~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~ 581 (618)
T PF01347_consen 542 VAAIQALRRL-AKHCPEKVREILLPIFMNTTEDPEVRIAAY 581 (618)
T ss_dssp HHHHHTTTTG-GGT-HHHHHHHHHHHHH-TTS-HHHHHHHH
T ss_pred HHHHHHHHHH-hhcCcHHHHHHHHHHhcCCCCChhHHHHHH
Confidence 9999998866 233333555555554443345566655554
No 58
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.94 E-value=13 Score=45.11 Aligned_cols=268 Identities=17% Similarity=0.175 Sum_probs=134.5
Q ss_pred hhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHH---HhccCCC-----H----HHH
Q 002870 435 KYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGI---SYAGTQN-----D----QIR 502 (872)
Q Consensus 435 ~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGL---ay~Gt~~-----~----~i~ 502 (872)
.|....+.-++..|+-|+=..+-|..- ....+....+++.+..+-+|.+|+-.+-+ .+.+.-. + +++
T Consensus 205 ~~~~~~D~~Vrt~A~eglL~L~eg~kL-~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF 283 (823)
T KOG2259|consen 205 YLEHDQDFRVRTHAVEGLLALSEGFKL-SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAF 283 (823)
T ss_pred HHhcCCCcchHHHHHHHHHhhcccccc-cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHH
Confidence 334455667788887764444434422 23467777788888888999887554333 2322211 1 233
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHH-HHhhc---CccccCchhHhHHHHHHHhhhcCChhhHH
Q 002870 503 HKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIF-ALMDR---SESELGEPLTRLIPLGLGLLYLGKQESVE 578 (872)
Q Consensus 503 e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~-~L~~~---~~~~l~e~~~r~~~lglgLl~~G~~e~a~ 578 (872)
..+-..+.|-+....| .|+=+||-. ++-+++++...+. -+|.+ ..+. |++-.+. .+-|=---|++-.+|
T Consensus 284 ~~vC~~v~D~sl~VRV--~AaK~lG~~--~~vSee~i~QTLdKKlms~lRRkr~a-hkrpk~l--~s~GewSsGk~~~ad 356 (823)
T KOG2259|consen 284 SSVCRAVRDRSLSVRV--EAAKALGEF--EQVSEEIIQQTLDKKLMSRLRRKRTA-HKRPKAL--YSSGEWSSGKEWNAD 356 (823)
T ss_pred HHHHHHHhcCceeeee--hHHHHhchH--HHhHHHHHHHHHHHHHhhhhhhhhhc-ccchHHH--HhcCCcccCcccccc
Confidence 3344455676655555 588888875 4444444333222 22221 0111 1111111 111111123332333
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHH
Q 002870 579 ATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 658 (872)
Q Consensus 579 ~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~ 658 (872)
.--+...+-...++-.|++-+ +.|-+.+..- +||++||-+++.++.+.| ..+.+.+.-
T Consensus 357 vpsee~d~~~~siI~sGACGA----------------~VhGlEDEf~---EVR~AAV~Sl~~La~ssP---~FA~~aldf 414 (823)
T KOG2259|consen 357 VPSEEDDEEEESIIPSGACGA----------------LVHGLEDEFY---EVRRAAVASLCSLATSSP---GFAVRALDF 414 (823)
T ss_pred Cchhhccccccccccccccce----------------eeeechHHHH---HHHHHHHHHHHHHHcCCC---CcHHHHHHH
Confidence 333333333333444443321 2222211111 578888888888888777 555555555
Q ss_pred Hhhc---CChhHHhHHHHHHhhhcc-CCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc---hHHHHHHHHhhh
Q 002870 659 LLQY---GEQNIRRAVPLALGLLCI-SNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN---ARIAGMLRNLSS 731 (872)
Q Consensus 659 L~~~---~~~~VR~ga~lALGL~~a-gt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n---~rv~~~lr~l~s 731 (872)
|... ....||--+..||-.+.. ++=+.+-+++...-..|...+||.+..-=|+..-.-+-+ --++.+|+.|.+
T Consensus 415 LvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~k 494 (823)
T KOG2259|consen 415 LVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGK 494 (823)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh
Confidence 5433 335677777777765532 334455555666666777777887655444433222222 235677777776
Q ss_pred h
Q 002870 732 Y 732 (872)
Q Consensus 732 ~ 732 (872)
|
T Consensus 495 y 495 (823)
T KOG2259|consen 495 Y 495 (823)
T ss_pred C
Confidence 6
No 59
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=87.53 E-value=83 Score=38.94 Aligned_cols=298 Identities=12% Similarity=0.003 Sum_probs=147.0
Q ss_pred cCchhHHHHHHHhhhhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHH
Q 002870 406 NKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGA 485 (872)
Q Consensus 406 ~~~~~k~~A~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA 485 (872)
..++.......+......|+.++++..+++.+........ +...+|.++.... ..+.+...+...+.-.... ..+
T Consensus 72 ~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~--a~~~la~~l~~~g-~~~~Ai~~l~~Al~l~P~~--~~a 146 (656)
T PRK15174 72 AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE--DVLLVASVLLKSK-QYATVADLAEQAWLAFSGN--SQI 146 (656)
T ss_pred CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCc--HHH
Confidence 3334444445555556789999999999888764333333 3444555443322 2345777777776532111 123
Q ss_pred HHHHHHHhccCCCH-HHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHH
Q 002870 486 IMGLGISYAGTQND-QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIP 563 (872)
Q Consensus 486 ~lGLGLay~Gt~~~-~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~ 563 (872)
...+|-++...++. +..+.+...+. ++. +.+.. ..+ ..++..++.+.+...+..++...+.. .+.. ...
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~----~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~-~~~~--~~~ 217 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMI----ATC-LSFLNKSRLPEDHDLARALLPFFALE-RQES--AGL 217 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHH----HHH-HHHHHcCCHHHHHHHHHHHHhcCCCc-chhH--HHH
Confidence 34455556555553 45555555443 222 22221 112 22445565554455555444332111 1111 122
Q ss_pred HHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHH-----HHHHHHHhhcccCCCCccchhhhHhHh
Q 002870 564 LGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL-----KVQNLLGHCAQHHEKGEAYQGPAVLGI 638 (872)
Q Consensus 564 lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~-----~i~~LL~~~~~~~~d~~~vrr~Avl~i 638 (872)
++..+...|+.+++...++........ .......+|.+|...|+.. ++..+-+...-+.+ +.+....+|.
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~--~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~---~~~a~~~lg~ 292 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLD--GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD---NVRIVTLYAD 292 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Confidence 345667778888777766665443211 1223345778888888754 34433333332222 3444455555
Q ss_pred hhhhhcchhhHhHHHHHHHHHhhcC--ChhHHhHHHHHHhhhccCCCc-hHHHHHHHHhh-cCCchHHHHHHHHHHHHHc
Q 002870 639 AMVAMAEELGLEMAIRSLEHLLQYG--EQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDSEVAMAAVISLGLIG 714 (872)
Q Consensus 639 glI~~~~~~g~e~~~~il~~L~~~~--~~~VR~ga~lALGL~~agt~~-~~aid~L~~l~-~D~d~~Vr~~AiiAlGlV~ 714 (872)
.+...|+. +.+...+...++.. ++.++.. +|.++...++ .++++.+.+.. .+|+... .....+..+..
T Consensus 293 ~l~~~g~~---~eA~~~l~~al~l~P~~~~a~~~----La~~l~~~G~~~eA~~~l~~al~~~P~~~~-~~~~~a~al~~ 364 (656)
T PRK15174 293 ALIRTGQN---EKAIPLLQQSLATHPDLPYVRAM----YARALRQVGQYTAASDEFVQLAREKGVTSK-WNRYAAAALLQ 364 (656)
T ss_pred HHHHCCCH---HHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHhCccchH-HHHHHHHHHHH
Confidence 55555665 67777777665442 3444433 3444333343 35667777665 3454321 11112333444
Q ss_pred CCCCchHHHHHHHHhhh
Q 002870 715 SGTNNARIAGMLRNLSS 731 (872)
Q Consensus 715 aGt~n~rv~~~lr~l~s 731 (872)
.|..+ .....+++..+
T Consensus 365 ~G~~d-eA~~~l~~al~ 380 (656)
T PRK15174 365 AGKTS-EAESVFEHYIQ 380 (656)
T ss_pred CCCHH-HHHHHHHHHHH
Confidence 44433 33344444433
No 60
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=86.37 E-value=1.1e+02 Score=39.09 Aligned_cols=287 Identities=18% Similarity=0.154 Sum_probs=152.3
Q ss_pred CCchhHHHHHHHHHHhhcCCCC----ChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHH---HHHHHHHHh---
Q 002870 440 TDNHVIAGALLGVGIVNCGIRN----DCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQ---IRHKLSTIL--- 509 (872)
Q Consensus 440 ~~~~~k~GAllaLGli~~G~~~----e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~---i~e~L~~~L--- 509 (872)
.+..+|--|+-.+|.+-+.-.+ +-.+.+..|.+-+ .++++|..|+=++-++++..-+=+ +...+.+.+
T Consensus 582 ~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~f 659 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASF 659 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHH
Confidence 4567777787777766443221 1112344444444 357899999999999887654322 222333333
Q ss_pred -cCCC-CchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc-CccccCchhHhHHHHHHHhhhcCChhhH----HHHHH
Q 002870 510 -NDAK-SPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR-SESELGEPLTRLIPLGLGLLYLGKQESV----EATAE 582 (872)
Q Consensus 510 -~d~~-~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~-~~~~l~e~~~r~~~lglgLl~~G~~e~a----~~ll~ 582 (872)
.... ........|...|--.+.++...+.++.++..|-.- .++++| ....+.--+..++.+..... +.+++
T Consensus 660 lrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlh--vt~~a~~~L~tl~~~~ps~l~~~~~~iL~ 737 (1233)
T KOG1824|consen 660 LRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLH--VTQLAVAFLTTLAIIQPSSLLKISNPILD 737 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHH--HHHHHHHHHHHHHhcccHHHHHHhhhhHH
Confidence 2110 011122345556666777788878888777654321 233321 22222222344454444321 12222
Q ss_pred HHh-hhhhhhhhhhh---HHHHHHhhhcCCCHHH-HHHHHHhhcccCCCCc--cchhhhHhHhh-----hhhhcchhhHh
Q 002870 583 VSK-TFNEKIRKYCD---MTLLSCAYAGTGNVLK-VQNLLGHCAQHHEKGE--AYQGPAVLGIA-----MVAMAEELGLE 650 (872)
Q Consensus 583 ~L~-~~~~~i~r~~~---~~~~~lAyaGTGn~~~-i~~LL~~~~~~~~d~~--~vrr~Avl~ig-----lI~~~~~~g~e 650 (872)
.+. -...|...-++ ++-.=-|..+|++... +-.++..+...+.+.. -+-+-|-.+|| ++..-.+.+..
T Consensus 738 ~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s 817 (1233)
T KOG1824|consen 738 EIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKS 817 (1233)
T ss_pred HHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchh
Confidence 221 12334333222 1111123345655433 5556665544433210 12222222222 22222222335
Q ss_pred HHHHHHHHHhhc-CChhHHhHHHHHHhhhccC---CCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHH
Q 002870 651 MAIRSLEHLLQY-GEQNIRRAVPLALGLLCIS---NPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGML 726 (872)
Q Consensus 651 ~~~~il~~L~~~-~~~~VR~ga~lALGL~~ag---t~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~l 726 (872)
-+.+++..+... .+..+|--+-+.+|-+.=+ +|..+.-+++-...+.|..+|+.+|-.|||-+..|.-+.=+.-+|
T Consensus 818 ~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil 897 (1233)
T KOG1824|consen 818 LATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFIL 897 (1233)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHH
Confidence 566666666533 3567899999999988644 567777788778888899999999999999999998765444455
Q ss_pred HHhh
Q 002870 727 RNLS 730 (872)
Q Consensus 727 r~l~ 730 (872)
.|+.
T Consensus 898 ~qi~ 901 (1233)
T KOG1824|consen 898 EQIE 901 (1233)
T ss_pred HHHh
Confidence 5443
No 61
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.59 E-value=8.9 Score=50.20 Aligned_cols=82 Identities=21% Similarity=0.283 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhhcCChhHHhHHHHHH-hhh-ccC------CCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcC-CCCc-
Q 002870 650 EMAIRSLEHLLQYGEQNIRRAVPLAL-GLL-CIS------NPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGS-GTNN- 719 (872)
Q Consensus 650 e~~~~il~~L~~~~~~~VR~ga~lAL-GL~-~ag------t~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~a-Gt~n- 719 (872)
.....++.++.-+.|||.|++.|.=| .++ +.| ..++++.....++..|.|.++.-.|-=+||+|.- |...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchh
Confidence 56778889999999999999987432 221 333 4455666666777889999999989999999863 3332
Q ss_pred --hHHHHHHHHhhh
Q 002870 720 --ARIAGMLRNLSS 731 (872)
Q Consensus 720 --~rv~~~lr~l~s 731 (872)
.-|..++.+|..
T Consensus 897 k~~LV~sL~~tl~~ 910 (1702)
T KOG0915|consen 897 KKSLVDSLVNTLTG 910 (1702)
T ss_pred HHHHHHHHHHHHhc
Confidence 235566666643
No 62
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=84.50 E-value=65 Score=36.49 Aligned_cols=250 Identities=15% Similarity=0.145 Sum_probs=140.8
Q ss_pred CCCchhHHHHHHHHHHhhcCCCCCh----h-hHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC--HH-----HHHHHH
Q 002870 439 STDNHVIAGALLGVGIVNCGIRNDC----D-PALALLSEYVGREDACIRIGAIMGLGISYAGTQN--DQ-----IRHKLS 506 (872)
Q Consensus 439 s~~~~~k~GAllaLGli~~G~~~e~----d-~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~--~~-----i~e~L~ 506 (872)
...+.-++-|.-+|--|.+|+.+.. | -+..++...|.+++.-++--++-+||=+.-.|.. .. +++.|+
T Consensus 126 ~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL 205 (526)
T COG5064 126 IQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLL 205 (526)
T ss_pred cchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHH
Confidence 3445666777777777777765421 0 2556666777777777777888888876433321 11 334455
Q ss_pred HHhcCCCCchHHHHHHHHHHHhHhcCCCCH-------HHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHH
Q 002870 507 TILNDAKSPLDVIAFSAISLGLIYVGSCNE-------EVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEA 579 (872)
Q Consensus 507 ~~L~d~~~~~e~~~~AaLALGLi~lGs~n~-------~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ 579 (872)
.++..++...-..+-+-..|.-+.-|...+ .++..|...++.+ +..+.-=+.-+++-+-=|.+|.+++
T Consensus 206 ~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~-----D~evlvDA~WAiSYlsDg~~E~i~a 280 (526)
T COG5064 206 GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR-----DPEVLVDACWAISYLSDGPNEKIQA 280 (526)
T ss_pred HHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHHhccCcHHHHHH
Confidence 555444333333445666666665555421 2223333322222 1223334445666666677777776
Q ss_pred HHH---------HHhh----hhhhhhhhhhHHHHHHhhhcCCCH------------HHHHHHHHhhcccCCCCccchhhh
Q 002870 580 TAE---------VSKT----FNEKIRKYCDMTLLSCAYAGTGNV------------LKVQNLLGHCAQHHEKGEAYQGPA 634 (872)
Q Consensus 580 ll~---------~L~~----~~~~i~r~~~~~~~~lAyaGTGn~------------~~i~~LL~~~~~~~~d~~~vrr~A 634 (872)
+++ .|.+ +..|..|.-+-. =||+. .+.+.|| ++..+ .+|.-|
T Consensus 281 vld~g~~~RLvElLs~~sa~iqtPalR~vGNI-------VTG~D~QTqviI~~G~L~a~~~lL----s~~ke--~irKEa 347 (526)
T COG5064 281 VLDVGIPGRLVELLSHESAKIQTPALRSVGNI-------VTGSDDQTQVIINCGALKAFRSLL----SSPKE--NIRKEA 347 (526)
T ss_pred HHhcCCcHHHHHHhcCccccccCHHHHhhcCe-------eecCccceehheecccHHHHHHHh----cChhh--hhhhhh
Confidence 554 3332 122444443222 24442 2333332 22232 688888
Q ss_pred HhHhhhhhhcchhhHhHHHHH--------HHHHhhcCChhHHhHHHHHHhhh-ccCCCchHHHHHHHHhhcCCchHHHHH
Q 002870 635 VLGIAMVAMAEELGLEMAIRS--------LEHLLQYGEQNIRRAVPLALGLL-CISNPKVNVMDTLSRLSHDTDSEVAMA 705 (872)
Q Consensus 635 vl~iglI~~~~~~g~e~~~~i--------l~~L~~~~~~~VR~ga~lALGL~-~agt~~~~aid~L~~l~~D~d~~Vr~~ 705 (872)
.-.|.-|..|+. +++..+ +-||+.+++-.+|.-+|+|+.=+ +-|.+.++++..| |.|+
T Consensus 348 CWTiSNITAGnt---eqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryL----------v~qG 414 (526)
T COG5064 348 CWTISNITAGNT---EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYL----------VSQG 414 (526)
T ss_pred heeecccccCCH---HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHH----------HHcc
Confidence 888888888876 544433 45677888999999999998755 4555666655443 5566
Q ss_pred HHHHHHHHcCCCCc
Q 002870 706 AVISLGLIGSGTNN 719 (872)
Q Consensus 706 AiiAlGlV~aGt~n 719 (872)
+|=.|.=.+.+..|
T Consensus 415 ~IkpLc~~L~~~dN 428 (526)
T COG5064 415 FIKPLCDLLDVVDN 428 (526)
T ss_pred chhHHHHHHhccCc
Confidence 66666666666665
No 63
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=84.37 E-value=13 Score=38.87 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=47.0
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHhhhccCCC--------c---hHHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 002870 653 IRSLEHLLQYGEQNIRRAVPLALGLLCISNP--------K---VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716 (872)
Q Consensus 653 ~~il~~L~~~~~~~VR~ga~lALGL~~agt~--------~---~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aG 716 (872)
..++...+.+.+|.+|..++-.+..+.-..+ . ..++..+.++..|++..||..|.-++..+.-.
T Consensus 133 ~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 133 LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 7777888889999999999988887765555 1 34677888999999999999988777776433
No 64
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=84.35 E-value=1.6 Score=31.47 Aligned_cols=26 Identities=38% Similarity=0.447 Sum_probs=17.5
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHH
Q 002870 688 MDTLSRLSHDTDSEVAMAAVISLGLI 713 (872)
Q Consensus 688 id~L~~l~~D~d~~Vr~~AiiAlGlV 713 (872)
+..|.++.+|++..||.+|+.++|-+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 44566777777777777777777755
No 65
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.00 E-value=1.3e+02 Score=37.27 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=32.9
Q ss_pred cchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHh-HHHHHHhhh
Q 002870 629 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRR-AVPLALGLL 678 (872)
Q Consensus 629 ~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~-ga~lALGL~ 678 (872)
+.+-...++++-|+--.|.....=.+++-..+.+.|+.||- +.-|-.|++
T Consensus 314 NLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 314 NLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred cHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 67777777777777777755444555666667777777774 344555655
No 66
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=82.91 E-value=3.2 Score=37.99 Aligned_cols=66 Identities=26% Similarity=0.335 Sum_probs=51.7
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-------hHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 002870 652 AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 652 ~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-------~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~ 718 (872)
++.++. ++.++++.+|..++.+++-++.+++. ..+++.|.++.+|++..|+..|+.+++-+..+..
T Consensus 9 i~~l~~-~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 9 LPALVS-LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHHH-HHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 344444 45677899999999999999877422 2556778888899999999999999999987664
No 67
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=82.90 E-value=8.6 Score=39.21 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=61.6
Q ss_pred cchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccC---CCchHHHHHHHHhhcCCchHHHHH
Q 002870 629 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCIS---NPKVNVMDTLSRLSHDTDSEVAMA 705 (872)
Q Consensus 629 ~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~ag---t~~~~aid~L~~l~~D~d~~Vr~~ 705 (872)
.+|..+++++|=++.+-|.-.+.....+-..+++.+|.||+.+...+.-+-.. ......+..+-.+..|+++.||..
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHH
Confidence 68899999999777776632343344444556888999999999988866322 122233233345568999999999
Q ss_pred HHHHHHHHcCC
Q 002870 706 AVISLGLIGSG 716 (872)
Q Consensus 706 AiiAlGlV~aG 716 (872)
|...+.-+...
T Consensus 83 A~~~~~e~~~~ 93 (178)
T PF12717_consen 83 ARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHh
Confidence 99888888776
No 68
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=82.44 E-value=2.5 Score=34.17 Aligned_cols=49 Identities=22% Similarity=0.170 Sum_probs=32.5
Q ss_pred cchhhhHhHhhhhhhcchh-hHh---HHHHHHHHHhhcCChhHHhHHHHHHhh
Q 002870 629 AYQGPAVLGIAMVAMAEEL-GLE---MAIRSLEHLLQYGEQNIRRAVPLALGL 677 (872)
Q Consensus 629 ~vrr~Avl~iglI~~~~~~-g~e---~~~~il~~L~~~~~~~VR~ga~lALGL 677 (872)
.||+.|+.+||-++-..+. ... .+...+..++++.++.||..++.|||-
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4688888888876544331 112 233334455677888999999999984
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=81.87 E-value=1.3e+02 Score=36.38 Aligned_cols=254 Identities=10% Similarity=-0.023 Sum_probs=120.0
Q ss_pred chhhHHhHhhhccCCCchhHHHHHHHHHHhh-----cCCC---CChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC
Q 002870 426 VDSGLAQIDKYFHSTDNHVIAGALLGVGIVN-----CGIR---NDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ 497 (872)
Q Consensus 426 ~~~~l~~l~~yL~s~~~~~k~GAllaLGli~-----~G~~---~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~ 497 (872)
.++|+..+.+.+.....+..+-+ ++|.++ .|.. ...+.+...+...+.-...... +...+|.++...+
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~--~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~--a~~~lg~~~~~~g 352 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYC--ALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ--ALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHH--HHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHcc
Confidence 34566777776654444444333 333222 1211 1123466666666653222222 2233455554444
Q ss_pred C-HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChh
Q 002870 498 N-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE 575 (872)
Q Consensus 498 ~-~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e 575 (872)
+ ++....+...+. +++ +.+ +-+.+|.++.-.|+.+.+...+...++..+. ..... ...+..+...|+-+
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~----a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~---~~~~~-~~~~~~~~~~g~~e 423 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SAD----IKYYYGWNLFMAGQLEEALQTINECLKLDPT---RAAAG-ITKLWITYYHTGID 423 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---ChhhH-HHHHHHHHhccCHH
Confidence 4 345555555554 332 222 4456677777777755444444444333222 11111 12233456677777
Q ss_pred hHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHH
Q 002870 576 SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRS 655 (872)
Q Consensus 576 ~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~i 655 (872)
++...++.+....+|-. ......+|.+|...|+.......+.-...... ....+.-.++-+..+.. +.+...
T Consensus 424 eA~~~~~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g---~~a~~~ 495 (553)
T PRK12370 424 DAIRLGDELRSQHLQDN-PILLSMQVMFLSLKGKHELARKLTKEISTQEI----TGLIAVNLLYAEYCQNS---ERALPT 495 (553)
T ss_pred HHHHHHHHHHHhccccC-HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc----hhHHHHHHHHHHHhccH---HHHHHH
Confidence 66666655443222211 12335578888899996544444333322211 12223333333333332 345555
Q ss_pred HHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHH
Q 002870 656 LEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEV 702 (872)
Q Consensus 656 l~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~V 702 (872)
+..|.... .-+..-+-.+.++++.-|+.+.-..+.++-++.+..+
T Consensus 496 l~~ll~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 540 (553)
T PRK12370 496 IREFLESE--QRIDNNPGLLPLVLVAHGEAIAEKMWNKFKNEDNIWF 540 (553)
T ss_pred HHHHHHHh--hHhhcCchHHHHHHHHHhhhHHHHHHHHhhccchHhh
Confidence 55554322 1122112224555555578877777777766655443
No 70
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=81.13 E-value=1.6e+02 Score=37.08 Aligned_cols=167 Identities=8% Similarity=0.016 Sum_probs=96.7
Q ss_pred HHHHhhhcCChhhHHHHHHHHhhhhhhhh---hhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCC------------C-
Q 002870 564 LGLGLLYLGKQESVEATAEVSKTFNEKIR---KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEK------------G- 627 (872)
Q Consensus 564 lglgLl~~G~~e~a~~ll~~L~~~~~~i~---r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d------------~- 627 (872)
+|..++..|+.+++...++.+...+ |.. .......++.+|.-.|........+.-+.+...+ +
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 4667888888899988888765432 221 1223344566778889876665555443332110 0
Q ss_pred ccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-hHHHHHHHHhh-cCCchHHHHH
Q 002870 628 EAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDSEVAMA 705 (872)
Q Consensus 628 ~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-~~aid~L~~l~-~D~d~~Vr~~ 705 (872)
.........+..++..++. +.+...++.+......+. .+-+.+|.+....++ .++++.|.+.. .+|++. .
T Consensus 357 ~~~~a~~~~a~~l~~~g~~---~eA~~~l~~al~~~P~n~--~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~---~ 428 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDL---PQAEMRARELAYNAPGNQ--GLRIDYASVLQARGWPRAAENELKKAEVLEPRNI---N 428 (765)
T ss_pred hHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---H
Confidence 0112234555666666766 788888888766543232 234455555543343 45666777654 466653 2
Q ss_pred HHHHHHHHcCCCCc-hHHHHHHHHhhhhhccChhh
Q 002870 706 AVISLGLIGSGTNN-ARIAGMLRNLSSYYYKDANL 739 (872)
Q Consensus 706 AiiAlGlV~aGt~n-~rv~~~lr~l~s~~~~d~~~ 739 (872)
+.+++|++..+.++ .+....++++.+..-.|+.+
T Consensus 429 l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 429 LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 45677777777776 45566777776655555543
No 71
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.35 E-value=1e+02 Score=34.33 Aligned_cols=158 Identities=13% Similarity=0.058 Sum_probs=79.3
Q ss_pred HHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhH-hhhh
Q 002870 563 PLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLG-IAMV 641 (872)
Q Consensus 563 ~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~-iglI 641 (872)
+-+..++--|.-..++.++.........- ....+.++-.|.-+|.++..+.+|...-.+..+ -++.++.+ |.|+
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~--~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~---~~~~~l~a~i~ll 213 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPEN--SEAKLLLAECLLAAGDVEAAQAILAALPLQAQD---KAAHGLQAQIELL 213 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCccc--chHHHHHHHHHHHcCChHHHHHHHHhCcccchh---hHHHHHHHHHHHH
Confidence 34444555555555555554433221111 223444556667778877777777765544332 11111222 3332
Q ss_pred hhcchhhHhHHHHHHHHHhhcC-ChhHHhHHHHHHhhhccCCCchHHHHHHHHh----hcCCchHHHHHHHHHHHHHcCC
Q 002870 642 AMAEELGLEMAIRSLEHLLQYG-EQNIRRAVPLALGLLCISNPKVNVMDTLSRL----SHDTDSEVAMAAVISLGLIGSG 716 (872)
Q Consensus 642 ~~~~~~g~e~~~~il~~L~~~~-~~~VR~ga~lALGL~~agt~~~~aid~L~~l----~~D~d~~Vr~~AiiAlGlV~aG 716 (872)
---.. ......+...+..+. |+..|...+..+-+. | -+..+.+.|..+ ..+.|+.+|..-+=-+.+ +|
T Consensus 214 ~qaa~--~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~--g-~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~--~g 286 (304)
T COG3118 214 EQAAA--TPEIQDLQRRLAADPDDVEAALALADQLHLV--G-RNEAALEHLLALLRRDRGFEDGEARKTLLELFEA--FG 286 (304)
T ss_pred HHHhc--CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh--cC
Confidence 11110 012334445555443 455555433333322 2 233455554433 345577788754444444 48
Q ss_pred CCchHHHHHHHHhhhh
Q 002870 717 TNNARIAGMLRNLSSY 732 (872)
Q Consensus 717 t~n~rv~~~lr~l~s~ 732 (872)
+.+|.+.+.+|+|++.
T Consensus 287 ~~Dp~~~~~RRkL~sl 302 (304)
T COG3118 287 PADPLVLAYRRKLYSL 302 (304)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 8889999999999874
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=79.62 E-value=1.1e+02 Score=34.00 Aligned_cols=165 Identities=13% Similarity=0.089 Sum_probs=78.4
Q ss_pred HHHHHHhhhhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCC-hhhHHHHHHhhcCCCCHHHHHHHHHHHH
Q 002870 412 MSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND-CDPALALLSEYVGREDACIRIGAIMGLG 490 (872)
Q Consensus 412 ~~A~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e-~d~~~~lL~~~L~~~~~~v~~gA~lGLG 490 (872)
.....++.....++.+++...+.+.+.........-.+ ++.....|.... .+.+...+.......... .-+..-+|
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a 121 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY--WYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc--HHHHHHHH
Confidence 34455666667788888888777766432222222222 333333332211 111333332211111111 22222334
Q ss_pred HHhccCCC-HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhH-hHHHHHHH
Q 002870 491 ISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLT-RLIPLGLG 567 (872)
Q Consensus 491 Lay~Gt~~-~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~-r~~~lglg 567 (872)
.++...++ ++..+.+...+. ++.. ..+...+|.++...+..+.....++......+.. ..... -...++..
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~-----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~-~~~~~~~~~~la~~ 195 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDD-----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS-SMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC-----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC-cchhHHHHHHHHHH
Confidence 44444444 345566666654 2211 1466778888888777655555554333221111 11111 12235555
Q ss_pred hhhcCChhhHHHHHHHHh
Q 002870 568 LLYLGKQESVEATAEVSK 585 (872)
Q Consensus 568 Ll~~G~~e~a~~ll~~L~ 585 (872)
+...|+.+++...++...
T Consensus 196 ~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 196 YLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHCCCHHHHHHHHHHHh
Confidence 666777778777777653
No 73
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=77.43 E-value=25 Score=44.05 Aligned_cols=104 Identities=22% Similarity=0.246 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhcccCCCCccchhhhHhHhhhh--hhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHh----hhccCCC
Q 002870 610 VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMV--AMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALG----LLCISNP 683 (872)
Q Consensus 610 ~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI--~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALG----L~~agt~ 683 (872)
...|.++|....++ +- -+|+..+.+|.++ .+|.++-.+....++..+..+..|+||.+++-.+- ++.+..-
T Consensus 556 ~~~i~k~L~~~~q~-~y--~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~ 632 (759)
T KOG0211|consen 556 LEEIPKLLAMDLQD-NY--LVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR 632 (759)
T ss_pred HHhhHHHHHHhcCc-cc--chhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH
Confidence 34555666655443 21 4677777777664 46777767778888899999999999999987764 4456677
Q ss_pred chHHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 002870 684 KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716 (872)
Q Consensus 684 ~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aG 716 (872)
+..+..+|..+..|++-+||..|+.|.|.|..=
T Consensus 633 ~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 633 DEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 778888899999999999999999999988643
No 74
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.07 E-value=5.7 Score=50.06 Aligned_cols=87 Identities=29% Similarity=0.295 Sum_probs=67.2
Q ss_pred cchhhhHhHhhhhhhcchhhHhHHHH-----H-HHHHhhc-CChhHHhHHHHHHhhhccCCC-------chHHHHHHHHh
Q 002870 629 AYQGPAVLGIAMVAMAEELGLEMAIR-----S-LEHLLQY-GEQNIRRAVPLALGLLCISNP-------KVNVMDTLSRL 694 (872)
Q Consensus 629 ~vrr~Avl~iglI~~~~~~g~e~~~~-----i-l~~L~~~-~~~~VR~ga~lALGL~~agt~-------~~~aid~L~~l 694 (872)
+.|..|+.-+|-|.-+-+.|++.|.. + +++| .+ .+|-.|..+|++||.+..-.. ...|.+.|-.+
T Consensus 572 EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~l-nd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~ 650 (1387)
T KOG1517|consen 572 EQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHL-NDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL 650 (1387)
T ss_pred HHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHh-cCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH
Confidence 56778888888888777778776654 2 2344 44 368999999999999865433 33467889999
Q ss_pred hcCCchHHHHHHHHHHHHHcCC
Q 002870 695 SHDTDSEVAMAAVISLGLIGSG 716 (872)
Q Consensus 695 ~~D~d~~Vr~~AiiAlGlV~aG 716 (872)
..|+...||-+|+||||-..-+
T Consensus 651 LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 651 LSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred hcCccHHHHHHHHHHHHHHhcc
Confidence 9999999999999999976654
No 75
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=76.49 E-value=2.7 Score=29.44 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=21.6
Q ss_pred HHhHHHHHHhhhccCCCchHHHHHHHHhhcC
Q 002870 667 IRRAVPLALGLLCISNPKVNVMDTLSRLSHD 697 (872)
Q Consensus 667 VR~ga~lALGL~~agt~~~~aid~L~~l~~D 697 (872)
||+.++.+||-+ +++++++.|.+...|
T Consensus 1 VR~~Aa~aLg~i----gd~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQI----GDPRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-----SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc----CCHHHHHHHHHHhcC
Confidence 789999999988 778999988877654
No 76
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=75.25 E-value=1.9e+02 Score=34.65 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=52.3
Q ss_pred HHhhcCChhHHhHHHHHHhhhccCCCchHHH---------HHHHHh---hcCCchHHHHHHHHHHHHHcCCCC---chHH
Q 002870 658 HLLQYGEQNIRRAVPLALGLLCISNPKVNVM---------DTLSRL---SHDTDSEVAMAAVISLGLIGSGTN---NARI 722 (872)
Q Consensus 658 ~L~~~~~~~VR~ga~lALGL~~agt~~~~ai---------d~L~~l---~~D~d~~Vr~~AiiAlGlV~aGt~---n~rv 722 (872)
.+.++.|+.++-.|.=++|.++..+--..++ ..|..+ .+....++|..++=|++.+..... +.++
T Consensus 297 ~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i 376 (503)
T PF10508_consen 297 SMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDI 376 (503)
T ss_pred HHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 4457788999988888999987544333333 112222 234556788888999998854333 3466
Q ss_pred HHHHHHhhhhhccChhhH
Q 002870 723 AGMLRNLSSYYYKDANLL 740 (872)
Q Consensus 723 ~~~lr~l~s~~~~d~~~~ 740 (872)
..+.+......+.+|...
T Consensus 377 ~~~~~~w~~~~~~~~~~~ 394 (503)
T PF10508_consen 377 LSITESWYESLSGSPLSN 394 (503)
T ss_pred HHHHHHHHHHhcCCchHH
Confidence 667777666556666653
No 77
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.34 E-value=2.4e+02 Score=35.45 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=64.8
Q ss_pred HhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC--CHHHHHHHHHH
Q 002870 431 AQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ--NDQIRHKLSTI 508 (872)
Q Consensus 431 ~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~--~~~i~e~L~~~ 508 (872)
+-+.+-|..+++.+|+.||-.+.-|---.... -++...++...++++++|..|+.++--.|---. ..++.+.+..+
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSsIRvp~IaP--I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~L 188 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSSIRVPMIAP--IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKL 188 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcchhhHHH--HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHH
Confidence 44556677888999999999888775433221 134455677888999999999999888885322 23566667777
Q ss_pred hcCCCCchHHHHHHHHHHHhH
Q 002870 509 LNDAKSPLDVIAFSAISLGLI 529 (872)
Q Consensus 509 L~d~~~~~e~~~~AaLALGLi 529 (872)
|.|.+ .-|...|.+|.--|
T Consensus 189 LaD~s--plVvgsAv~AF~ev 207 (968)
T KOG1060|consen 189 LADRS--PLVVGSAVMAFEEV 207 (968)
T ss_pred hcCCC--CcchhHHHHHHHHh
Confidence 77763 34555677776555
No 78
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=74.17 E-value=2.3e+02 Score=35.10 Aligned_cols=278 Identities=10% Similarity=-0.019 Sum_probs=140.3
Q ss_pred hhhhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC
Q 002870 418 LGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ 497 (872)
Q Consensus 418 lGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~ 497 (872)
+-..+.|+.++++..+..-+........+-..+|......|.. +.+...+...+...... ..+...+|.++...+
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~---~~A~~~l~~~l~~~P~~--~~a~~~la~~l~~~g 124 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQP---DAVLQVVNKLLAVNVCQ--PEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCH---HHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcC
Confidence 3445678999998888777654444444444444444455443 34777777766532111 124466667666655
Q ss_pred C-HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChh
Q 002870 498 N-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE 575 (872)
Q Consensus 498 ~-~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e 575 (872)
+ ++..+.+...+. ++. ..+ +-..+|.++...++.+-+...+..+....+.. ...... + ..+...|+-+
T Consensus 125 ~~~~Ai~~l~~Al~l~P~-~~~----a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~--~~a~~~--~-~~l~~~g~~~ 194 (656)
T PRK15174 125 QYATVADLAEQAWLAFSG-NSQ----IFALHLRTLVLMDKELQAISLARTQAQEVPPR--GDMIAT--C-LSFLNKSRLP 194 (656)
T ss_pred CHHHHHHHHHHHHHhCCC-cHH----HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC--HHHHHH--H-HHHHHcCCHH
Confidence 4 356666666664 332 222 45566777777777654444444333222211 111111 1 2355667777
Q ss_pred hHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhh-HhHHHH
Q 002870 576 SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG-LEMAIR 654 (872)
Q Consensus 576 ~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g-~e~~~~ 654 (872)
++...++.+.... |..........+.++...|+.......+.-+.....+ +......+|..+...|+.-. .+.+..
T Consensus 195 eA~~~~~~~l~~~-~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~--~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 195 EDHDLARALLPFF-ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD--GAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHhcC-CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 7777776654432 1111112234466778889865444444433322222 33333445666666666510 013677
Q ss_pred HHHHHhhcCChhHHhHHHHHHhhhccCCCc-hHHHHHHHHhh-cCCchHHHHHHHHHHHHHcCCCC
Q 002870 655 SLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDSEVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 655 il~~L~~~~~~~VR~ga~lALGL~~agt~~-~~aid~L~~l~-~D~d~~Vr~~AiiAlGlV~aGt~ 718 (872)
.++..+.-...+.+. -..+|.++...++ .+++..+.+.. .+|+.... ...+|.+....+
T Consensus 272 ~~~~Al~l~P~~~~a--~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a---~~~La~~l~~~G 332 (656)
T PRK15174 272 HWRHALQFNSDNVRI--VTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV---RAMYARALRQVG 332 (656)
T ss_pred HHHHHHhhCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCC
Confidence 777666543223332 3334444433333 45677776654 45654322 233455544444
No 79
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=72.56 E-value=36 Score=41.11 Aligned_cols=181 Identities=15% Similarity=0.161 Sum_probs=108.6
Q ss_pred hhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHH------HHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 002870 434 DKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALA------LLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLST 507 (872)
Q Consensus 434 ~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~------lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~ 507 (872)
.+-|.+.+.-+.+..+--+|.|..+.. +--++.+ -|.+.|.+.+..+|..|.-.+|.+.-.-+..|++..|+.
T Consensus 694 tPILrnkh~Kv~~nti~lvg~I~~~~p-eyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~Lln 772 (975)
T COG5181 694 TPILRNKHQKVVANTIALVGTICMNSP-EYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLN 772 (975)
T ss_pred cHhhhhhhHHHhhhHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHh
Confidence 334446677777777777888876442 2112222 234456666778999999999999877777899999998
Q ss_pred HhcCCCCchHHHHHHHHHHHhH--hcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhh-------HH
Q 002870 508 ILNDAKSPLDVIAFSAISLGLI--YVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES-------VE 578 (872)
Q Consensus 508 ~L~d~~~~~e~~~~AaLALGLi--~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~-------a~ 578 (872)
-|.-.+-...+| .++|+|.+ ++|-- .+ +.+||...+|. ...+..+.-=++++.|--.+++ +-
T Consensus 773 nLkvqeRq~Rvc--tsvaI~iVae~cgpf--sV----lP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dYvy~it 843 (975)
T COG5181 773 NLKVQERQQRVC--TSVAISIVAEYCGPF--SV----LPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDYVYSIT 843 (975)
T ss_pred cchHHHHHhhhh--hhhhhhhhHhhcCch--hh----HHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 875221123443 45556655 23322 23 34444444443 2233344434444444333332 33
Q ss_pred HHHHHHhhhhhhhhhhhhHHH---HHHhhhcCCCHHHHHHHHHhhcccC
Q 002870 579 ATAEVSKTFNEKIRKYCDMTL---LSCAYAGTGNVLKVQNLLGHCAQHH 624 (872)
Q Consensus 579 ~ll~~L~~~~~~i~r~~~~~~---~~lAyaGTGn~~~i~~LL~~~~~~~ 624 (872)
.+++.-..+.||.-|..++-+ +++.+.|||+.++.=+||..+-...
T Consensus 844 PlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNI 892 (975)
T COG5181 844 PLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNI 892 (975)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhc
Confidence 466666677888888766532 4566789999998888888765543
No 80
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=71.73 E-value=13 Score=46.32 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=65.6
Q ss_pred HhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC---HH-HHHHHH
Q 002870 431 AQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN---DQ-IRHKLS 506 (872)
Q Consensus 431 ~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~---~~-i~e~L~ 506 (872)
+.+.+=++++++++|+-|+=.+|.+.-+-. .+.++.-+...+++++++||..|+++++-.|-=..+ +. ..+.+.
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~~~el--~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~ 172 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLRVKEL--LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILK 172 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcChHHH--HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHH
Confidence 345555788999999999999999865432 234677778889999999999999999999943222 22 344455
Q ss_pred HHhcCCCCchHHHHHHHHHHHhH
Q 002870 507 TILNDAKSPLDVIAFSAISLGLI 529 (872)
Q Consensus 507 ~~L~d~~~~~e~~~~AaLALGLi 529 (872)
..+.|+ ++.|++.|-.+|-.|
T Consensus 173 ~l~~D~--dP~Vi~nAl~sl~~i 193 (757)
T COG5096 173 ELVADS--DPIVIANALASLAEI 193 (757)
T ss_pred HHhhCC--CchHHHHHHHHHHHh
Confidence 555566 445555565555544
No 81
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=70.06 E-value=6.4 Score=28.28 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=19.5
Q ss_pred HHHHHHhhcCChhHHhHHHHHHhhh
Q 002870 654 RSLEHLLQYGEQNIRRAVPLALGLL 678 (872)
Q Consensus 654 ~il~~L~~~~~~~VR~ga~lALGL~ 678 (872)
..+-+++++.+|.||.+++.++|-+
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3455677889999999999999965
No 82
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=70.06 E-value=15 Score=41.08 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcC---CCcchHHHHHHHHHH
Q 002870 44 LKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETM---PDSDLKKYMADILSV 120 (872)
Q Consensus 44 ~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~---~~~~~k~~~AdilS~ 120 (872)
+.++|+..++.|.|...+-+..||+.+...+++... -.|+..++.+|.+.+++- ..++.+.+++-+++.
T Consensus 41 ~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~--------~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~L 112 (309)
T PF05004_consen 41 LEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYL--------PDFVEDRRETLLDALLKSLKKGKSEEQALAARALAL 112 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 357799999999999999999999999999987742 369999999988888752 233457788889999
Q ss_pred HhhhccC
Q 002870 121 LALTMSA 127 (872)
Q Consensus 121 l~~t~~~ 127 (872)
+++|.+.
T Consensus 113 l~ltlg~ 119 (309)
T PF05004_consen 113 LALTLGA 119 (309)
T ss_pred HhhhcCC
Confidence 9987653
No 83
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=69.43 E-value=6.7 Score=27.76 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=23.9
Q ss_pred hHHhHHHHHHhhhccCCCchHHHHHHHHhhcCC
Q 002870 666 NIRRAVPLALGLLCISNPKVNVMDTLSRLSHDT 698 (872)
Q Consensus 666 ~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~ 698 (872)
.||+.++.+||-+ +++++++.|..++.|+
T Consensus 2 ~vR~~aa~aLg~~----~~~~a~~~L~~~l~d~ 30 (30)
T smart00567 2 LVRHEAAFALGQL----GDEEAVPALIKALEDE 30 (30)
T ss_pred HHHHHHHHHHHHc----CCHhHHHHHHHHhcCC
Confidence 5899999999977 7788888888887764
No 84
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=68.95 E-value=41 Score=32.34 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=40.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhC-CChHHHHHHHHhcchHHHHHHHH
Q 002870 241 VLDIAYMIYLKFEEFPNALQIALFL-DNMQYVKQIFTSCDDLLRKKQFC 288 (872)
Q Consensus 241 vl~~~~~iy~k~~~~~~al~~al~l-~d~~~i~~i~~~~~d~~~~~Qla 288 (872)
+.+.++-+|.+.++|.+|+.++++- +|++...+.+.+..++..-.+++
T Consensus 84 l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~ 132 (140)
T smart00299 84 LYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVL 132 (140)
T ss_pred cHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHH
Confidence 5567888899999999999999987 89999999999987776555554
No 85
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=67.71 E-value=60 Score=33.03 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=62.6
Q ss_pred CchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccC---CCHHHHHHHHHHhcCCCCchH
Q 002870 441 DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGT---QNDQIRHKLSTILNDAKSPLD 517 (872)
Q Consensus 441 ~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt---~~~~i~e~L~~~L~d~~~~~e 517 (872)
++.+|..++.++|=...-+.+-.||....+...|.++++.+|..|++.|--....- .+..++-.+...+.|+ +.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~--~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE--NPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC--CHH
Confidence 35688899999995544444556778888999999999999999999877544321 1334534444566676 556
Q ss_pred HHHHHHHHHHhHhcC
Q 002870 518 VIAFSAISLGLIYVG 532 (872)
Q Consensus 518 ~~~~AaLALGLi~lG 532 (872)
++..|...+.-+..-
T Consensus 79 Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 79 IRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHHh
Confidence 767777777766544
No 86
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.42 E-value=3.3e+02 Score=34.10 Aligned_cols=260 Identities=15% Similarity=0.131 Sum_probs=129.2
Q ss_pred cCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHhcCCC
Q 002870 438 HSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ----NDQIRHKLSTILNDAK 513 (872)
Q Consensus 438 ~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~----~~~i~e~L~~~L~d~~ 513 (872)
++.++.+++=|+=.+|.+.-+...+ -+..=|...+++.++++|..|.++..-.|--.. +..+.+.|+..+.|+
T Consensus 96 ~d~np~iR~lAlrtm~~l~v~~i~e--y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~- 172 (734)
T KOG1061|consen 96 EDPNPLIRALALRTMGCLRVDKITE--YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDS- 172 (734)
T ss_pred CCCCHHHHHHHhhceeeEeehHHHH--HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCC-
Confidence 4567788887777777665433222 233444567788899999999888777664322 235778888888866
Q ss_pred CchHHHHHHHHHHHhHhcCCCC---HHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChh-hHHHHHHHHhhhhh
Q 002870 514 SPLDVIAFSAISLGLIYVGSCN---EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE-SVEATAEVSKTFNE 589 (872)
Q Consensus 514 ~~~e~~~~AaLALGLi~lGs~n---~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e-~a~~ll~~L~~~~~ 589 (872)
+..|++-|-=||-.|.--+.+ ......++..++++- ++ -+.|.+...+-.-.-|.-+.. .++.+++.+..
T Consensus 173 -~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al-~e-c~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p--- 246 (734)
T KOG1061|consen 173 -NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL-NE-CTEWGQIFILDCLAEYVPKDSREAEDICERLTP--- 246 (734)
T ss_pred -CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH-HH-hhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhh---
Confidence 334544444455555443332 122223333333321 11 235877766554333333333 56666665432
Q ss_pred hhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcc---cC----C--------CCccchhhhHhHhhhhhhcchhhHhHHHH
Q 002870 590 KIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQ---HH----E--------KGEAYQGPAVLGIAMVAMAEELGLEMAIR 654 (872)
Q Consensus 590 ~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~---~~----~--------d~~~vrr~Avl~iglI~~~~~~g~e~~~~ 654 (872)
...++... .=-+.++++-+++.+... .. . -.+.++-.+.=-+.+|....|. ....+
T Consensus 247 -~Lqh~n~a------vvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~--~~~~~ 317 (734)
T KOG1061|consen 247 -RLQHANSA------VVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPE--ILKVE 317 (734)
T ss_pred -hhccCCcc------eEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChH--HHHhH
Confidence 11111100 011234444444433322 00 0 0023444555567777777761 12222
Q ss_pred HHHHHhhcCChh-HHhH-HHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 002870 655 SLEHLLQYGEQN-IRRA-VPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716 (872)
Q Consensus 655 il~~L~~~~~~~-VR~g-a~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aG 716 (872)
+-.-+.+|.||. |+-- .=.-.++++ ++.-.+++.-|..+..+.|....+-||-|+|=+...
T Consensus 318 ~~~Ff~kynDPiYvK~eKleil~~la~-~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik 380 (734)
T KOG1061|consen 318 IKVFFCKYNDPIYVKLEKLEILIELAN-DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIK 380 (734)
T ss_pred hHeeeeecCCchhhHHHHHHHHHHHhh-HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhh
Confidence 222234555542 1110 001112222 233344666677777787766666677777766554
No 87
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.30 E-value=32 Score=43.80 Aligned_cols=139 Identities=19% Similarity=0.323 Sum_probs=88.2
Q ss_pred CCCCCCcc------cHHHHHHHHHHHHHHHHhccCccCH-------------HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 002870 142 EGDIGSWG------HEYVRNLAGEIAQEYAKRQTDEASI-------------DDLMELVQEIVAFHMKHNAEPEAVDLLM 202 (872)
Q Consensus 142 ~~d~~~wg------heYvr~L~~ei~~~y~~~~~~~~~~-------------~~L~~lv~~iv~~~l~~n~e~eAvdlal 202 (872)
.-|..-|+ ++|-|.|+-..++.-.......+++ .+|.+|.++||--.-..++-..-=.|+
T Consensus 949 R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLL- 1027 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLL- 1027 (1666)
T ss_pred ccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhH-
Confidence 45666664 6788999888776543222221111 366677776663222111111111111
Q ss_pred hcCChhhhHHHhhccchHHHHHHHHhhcccCCCCChH-----HHHHHHHHHHHccCCHHHHHHHHHh-CCChHHHHHHHH
Q 002870 203 EVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDM-----LVLDIAYMIYLKFEEFPNALQIALF-LDNMQYVKQIFT 276 (872)
Q Consensus 203 E~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~-----~vl~~~~~iy~k~~~~~~al~~al~-l~d~~~i~~i~~ 276 (872)
.+ ..+ +.+-.||..|+-..-+|-.+.-.. .+++-++.||.|++.+.+|++++|+ .++.|...+.-+
T Consensus 1028 ------iL-tAi-kad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe 1099 (1666)
T KOG0985|consen 1028 ------IL-TAI-KADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAE 1099 (1666)
T ss_pred ------HH-HHh-hcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHH
Confidence 11 111 134578888888887775432211 5889999999999999999999987 688898889889
Q ss_pred hcchHHHHHHHHH
Q 002870 277 SCDDLLRKKQFCY 289 (872)
Q Consensus 277 ~~~d~~~~~Qlaf 289 (872)
+|+.|.+--|+|=
T Consensus 1100 ~~n~p~vWsqlak 1112 (1666)
T KOG0985|consen 1100 RCNEPAVWSQLAK 1112 (1666)
T ss_pred hhCChHHHHHHHH
Confidence 9999888888763
No 88
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=64.89 E-value=46 Score=39.20 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhcchHHHHHHHHHHHHh
Q 002870 240 LVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILAR 293 (872)
Q Consensus 240 ~vl~~~~~iy~k~~~~~~al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~lar 293 (872)
+-|+-+.++....+++--++.|++.++|.+...++|.+++ +...|+..||
T Consensus 390 ~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~----~~~~A~~~A~ 439 (443)
T PF04053_consen 390 EKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETG----RLPEAALFAR 439 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcC----CchHHHHHHH
Confidence 4455555666666677777777777777776666666643 2344555554
No 89
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=64.70 E-value=49 Score=36.08 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhH-----HHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc
Q 002870 610 VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM-----AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK 684 (872)
Q Consensus 610 ~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~-----~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~ 684 (872)
...+++|+++.....++ .+++.+.++++-.+.-.. .++- ...++..++.+.+|.+|.-+.-||.=++....|
T Consensus 11 ~~~l~~Ll~lL~~t~dp--~i~e~al~al~n~aaf~~-nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDP--FIQEKALIALGNSAAFPF-NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred HHHHHHHHHHHhcCCCh--HHHHHHHHHHHhhccChh-HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 34445555555433222 455555555544332211 1111 112334444555555554444444444343333
Q ss_pred hHHH
Q 002870 685 VNVM 688 (872)
Q Consensus 685 ~~ai 688 (872)
...+
T Consensus 88 ~~~I 91 (254)
T PF04826_consen 88 QEQI 91 (254)
T ss_pred HHHH
Confidence 3333
No 90
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.32 E-value=31 Score=41.28 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=0.0
Q ss_pred hhcCCCHHHHHHHHH-----hhcccCCCCccchhhhHhHhhhhhhc--------chhhHhHHHHHHHHHhhcCChhHHhH
Q 002870 604 YAGTGNVLKVQNLLG-----HCAQHHEKGEAYQGPAVLGIAMVAMA--------EELGLEMAIRSLEHLLQYGEQNIRRA 670 (872)
Q Consensus 604 yaGTGn~~~i~~LL~-----~~~~~~~d~~~vrr~Avl~iglI~~~--------~~~g~e~~~~il~~L~~~~~~~VR~g 670 (872)
|.-.|+...|++++. |+.+-.. ..|++..+|+|.++.+ .+ .+++.++.-+ ++.|..|||-
T Consensus 31 l~~~~~~~~i~k~I~~L~~d~a~s~~~---n~rkGgLiGlAA~~iaLg~~~~~Y~~---~iv~Pv~~cf-~D~d~~vRyy 103 (675)
T KOG0212|consen 31 LVNNNDYDQIRKVISELAGDYAYSPHA---NMRKGGLIGLAAVAIALGIKDAGYLE---KIVPPVLNCF-SDQDSQVRYY 103 (675)
T ss_pred HHccCcHHHHHHHHHHHHHHhccCccc---ccccchHHHHHHHHHHhccccHHHHH---HhhHHHHHhc-cCccceeeeH
Q ss_pred HHHHHhhhccC------CCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc-------hHHHHHHHHhhhhhccCh
Q 002870 671 VPLALGLLCIS------NPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN-------ARIAGMLRNLSSYYYKDA 737 (872)
Q Consensus 671 a~lALGL~~ag------t~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n-------~rv~~~lr~l~s~~~~d~ 737 (872)
+|-+|=-++-. ..-++++|.|-+++.|+|..||-+|=+-=.++-.=-.. +.+..+||. ..|..+|
T Consensus 104 ACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~e--riy~~n~ 181 (675)
T KOG0212|consen 104 ACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRE--RIYVINP 181 (675)
T ss_pred hHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHH--HHhcCCc
Q ss_pred hhHHHH
Q 002870 738 NLLFCV 743 (872)
Q Consensus 738 ~~~f~~ 743 (872)
++|..+
T Consensus 182 ~tR~fl 187 (675)
T KOG0212|consen 182 MTRQFL 187 (675)
T ss_pred hHHHHH
No 91
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=61.56 E-value=1.7e+02 Score=28.93 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=9.9
Q ss_pred HHHHhhhcCCCHHHHHHHHH
Q 002870 599 LLSCAYAGTGNVLKVQNLLG 618 (872)
Q Consensus 599 ~~~lAyaGTGn~~~i~~LL~ 618 (872)
.+|..|...|+.......+.
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~ 159 (234)
T TIGR02521 140 NAGLCALKAGDFDKAEKYLT 159 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 34555556666544443333
No 92
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=60.24 E-value=5.1e+02 Score=33.92 Aligned_cols=223 Identities=12% Similarity=-0.042 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHhhcCC-CCHHHHHHHHHHHHHHhccCCC-HHHHHHHHHHhcCCCCchHHHHHH
Q 002870 445 IAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGISYAGTQN-DQIRHKLSTILNDAKSPLDVIAFS 522 (872)
Q Consensus 445 k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGLay~Gt~~-~~i~e~L~~~L~d~~~~~e~~~~A 522 (872)
...+...+|.+.... .. +.++..+...+.. ++. ..-+++|.++.-.++ ++..+.+...+..+... . +
T Consensus 476 ~~~a~~~LG~~l~~~-~~-~eAi~a~~~Al~~~Pd~----~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~----a 544 (987)
T PRK09782 476 DAAAWNRLAKCYRDT-LP-GVALYAWLQAEQRQPDA----WQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-E----D 544 (987)
T ss_pred CHHHHHHHHHHHHhC-Cc-HHHHHHHHHHHHhCCch----HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-H----H
Confidence 455777777776642 22 2366655555432 222 236666776544444 33444444444322111 1 3
Q ss_pred HHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 002870 523 AISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSC 602 (872)
Q Consensus 523 aLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~l 602 (872)
.+.+|.+++..++.+.+...++......+ +.......++..+...|+.+++...++...... |- ......+|.
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P----~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-P~--~~a~~~LA~ 617 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGL----GDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-PS--ANAYVARAT 617 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CC--HHHHHHHHH
Confidence 45667777777887766666655443321 122333344445555688888877776655432 21 234456778
Q ss_pred hhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhc--CChhHHhHHHHHHhhhcc
Q 002870 603 AYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY--GEQNIRRAVPLALGLLCI 680 (872)
Q Consensus 603 AyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~--~~~~VR~ga~lALGL~~a 680 (872)
++...|+.......+.-+.....+ +.....-+|..+...|+. +.+...+...++. .++.+.+..++++-
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd--~~~a~~nLG~aL~~~G~~---eeAi~~l~~AL~l~P~~~~a~~nLA~al~---- 688 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPN--NSNYQAALGYALWDSGDI---AQSREMLERAHKGLPDDPALIRQLAYVNQ---- 688 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHH----
Confidence 888999876555544444333222 455566677777777776 7777777765543 34555554444443
Q ss_pred CCCch-HHHHHHHHh
Q 002870 681 SNPKV-NVMDTLSRL 694 (872)
Q Consensus 681 gt~~~-~aid~L~~l 694 (872)
..|+. ++++.+++.
T Consensus 689 ~lGd~~eA~~~l~~A 703 (987)
T PRK09782 689 RLDDMAATQHYARLV 703 (987)
T ss_pred HCCCHHHHHHHHHHH
Confidence 23443 355556555
No 93
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=59.83 E-value=3.9e+02 Score=34.85 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=44.2
Q ss_pred HhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcC----CCCHHHHHHHHHHHHHH-hccCCCHHHHHHH
Q 002870 431 AQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACIRIGAIMGLGIS-YAGTQNDQIRHKL 505 (872)
Q Consensus 431 ~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v~~gA~lGLGLa-y~Gt~~~~i~e~L 505 (872)
..+-.-+.+.+..++..|.=|+|-++.--. -+-+-..+...++ -.+...=||||++|+-. ..|---++..+.+
T Consensus 344 e~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dV 421 (1133)
T KOG1943|consen 344 EHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDV 421 (1133)
T ss_pred HHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 334344567889999999999999976322 2112222222222 12355667999999864 3454444444444
Q ss_pred HHHh
Q 002870 506 STIL 509 (872)
Q Consensus 506 ~~~L 509 (872)
.|++
T Consensus 422 vplI 425 (1133)
T KOG1943|consen 422 VPLI 425 (1133)
T ss_pred HHHH
Confidence 4444
No 94
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.04 E-value=39 Score=41.74 Aligned_cols=102 Identities=18% Similarity=0.272 Sum_probs=71.3
Q ss_pred HHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch----HH
Q 002870 612 KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV----NV 687 (872)
Q Consensus 612 ~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~----~a 687 (872)
+|..+++-|.+. + +.+|..|+=.++.+-+.+-+ +.+.+=+....++.+|.+|+.++++.+-++-=++.. ..
T Consensus 87 avnt~~kD~~d~-n--p~iR~lAlrtm~~l~v~~i~--ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl 161 (734)
T KOG1061|consen 87 AVNTFLKDCEDP-N--PLIRALALRTMGCLRVDKIT--EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGL 161 (734)
T ss_pred hhhhhhccCCCC-C--HHHHHHHhhceeeEeehHHH--HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccch
Confidence 344455544322 2 25666666666666555432 444444455568888999999999988876555543 35
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 002870 688 MDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 688 id~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~ 718 (872)
++.|..+..|+++.|-.||+-|+.-|...++
T Consensus 162 ~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 162 VDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 7889999999999999999999999998876
No 95
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.75 E-value=5.1e+02 Score=32.79 Aligned_cols=126 Identities=16% Similarity=0.189 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHH----HHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHH
Q 002870 650 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMD----TLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGM 725 (872)
Q Consensus 650 e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid----~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~ 725 (872)
+.+..++.+++-..|.++||-+-=+|+-+-- -++.|+. +.....+|+|...|+-|+ -+..+=+|...|..+
T Consensus 312 vlainiLgkFL~n~d~NirYvaLn~L~r~V~--~d~~avqrHr~tIleCL~DpD~SIkrral---ELs~~lvn~~Nv~~m 386 (866)
T KOG1062|consen 312 VLAINILGKFLLNRDNNIRYVALNMLLRVVQ--QDPTAVQRHRSTILECLKDPDVSIKRRAL---ELSYALVNESNVRVM 386 (866)
T ss_pred HHHHHHHHHHhcCCccceeeeehhhHHhhhc--CCcHHHHHHHHHHHHHhcCCcHHHHHHHH---HHHHHHhccccHHHH
Confidence 5566788888888888999987777765543 3344443 455667899999987553 333333454445566
Q ss_pred HHHhhhhhccChhhHHHHHHHHhhhhcCCCcee---------ecccCCCCCCCChHHHHHHHHHH
Q 002870 726 LRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLT---------LNPYHSDRFLLSPTALAGIVTTL 781 (872)
Q Consensus 726 lr~l~s~~~~d~~~~f~~~lAqGll~~G~g~~t---------lsp~~sd~~~~~~~a~agLl~~l 781 (872)
-+.|-.|..+- ...|-+-+|.||.++--.--. +.-+..-..+++...+-.++..+
T Consensus 387 v~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LI 450 (866)
T KOG1062|consen 387 VKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLI 450 (866)
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 66666665433 446788899999887532211 11111223456666666666554
No 96
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=55.71 E-value=1.6e+02 Score=29.91 Aligned_cols=76 Identities=22% Similarity=0.202 Sum_probs=53.5
Q ss_pred HHHHHHhhcCChhHHhHHHHHHhhhccC-CCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhh
Q 002870 654 RSLEHLLQYGEQNIRRAVPLALGLLCIS-NPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLS 730 (872)
Q Consensus 654 ~il~~L~~~~~~~VR~ga~lALGL~~ag-t~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~ 730 (872)
+.+...+.+.|+.+|+.+...+.-.... +--..+++.+..+.+|.+.+|+.+.--+|.-++.- +..++..+++...
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~l~~~~ 184 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAFLEKNG 184 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence 6777788888999988887777554443 45556777888888999999998766666665544 2345666766643
No 97
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=55.24 E-value=56 Score=33.75 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 002870 651 MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRN 728 (872)
Q Consensus 651 ~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~ 728 (872)
...+.+...+++.|+.+|+.++.++--....+.-....+.+....+|++.+|+.+.--+|.-++.. +...+.+++.+
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~~~~v~~~l~~ 196 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK-DPDEVLEFLQK 196 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-CHHHHHHHHHH
Confidence 356677777888899999888777644444444455666777888999999998654444444333 22356677766
No 98
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.01 E-value=6.8e+02 Score=34.04 Aligned_cols=235 Identities=19% Similarity=0.263 Sum_probs=126.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHH-HHHH-hccCCC------HHHHHHHHHHhcCCC-CchHHHHHHHHHHHhHhc-CCCC
Q 002870 466 ALALLSEYVGREDACIRIGAIMG-LGIS-YAGTQN------DQIRHKLSTILNDAK-SPLDVIAFSAISLGLIYV-GSCN 535 (872)
Q Consensus 466 ~~~lL~~~L~~~~~~v~~gA~lG-LGLa-y~Gt~~------~~i~e~L~~~L~d~~-~~~e~~~~AaLALGLi~l-Gs~n 535 (872)
+...|...+.++++..|.++|.= |.++ |+|+.. .+|.+.....|.|.+ .+.+ .|+=|||+||= |-++
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QD---vAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQD---VASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHH---HHhcCceEEEecCCch
Confidence 44556666778888888765543 3333 677654 366666777777653 2334 58899999983 2221
Q ss_pred --HHHHHHHHHHHhhcC--ccccCchhHhHHHHHHHhhhcC-ChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCH
Q 002870 536 --EEVAQAIIFALMDRS--ESELGEPLTRLIPLGLGLLYLG-KQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV 610 (872)
Q Consensus 536 --~~~~e~ll~~L~~~~--~~~l~e~~~r~~~lglgLl~~G-~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~ 610 (872)
.+.++.++.+|++.. .+++.+..--|-. | .+| +++. ..++.|-....++ ---|..
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~---G--~Lg~Tp~G------------g~isTYKELc~LA---Sdl~qP 955 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQE---G--TLGKTPDG------------GKISTYKELCNLA---SDLGQP 955 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccC---C--cCCCCCCC------------CcchHHHHHHHHH---hhcCCh
Confidence 256778888777632 2222222111110 1 223 2211 0111111111111 123555
Q ss_pred HHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhh-HhHHHHHHHHHhhc-CC--hhHHhHHHHHHhhhccCCCc-h
Q 002870 611 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG-LEMAIRSLEHLLQY-GE--QNIRRAVPLALGLLCISNPK-V 685 (872)
Q Consensus 611 ~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g-~e~~~~il~~L~~~-~~--~~VR~ga~lALGL~~agt~~-~ 685 (872)
.-|-+.++.++.+-.= +-|++|..|+|-|+-.--.. ..-...++=+|-+| || +.|+.+-.--.+.+- ++ .
T Consensus 956 dLVYKFM~LAnh~A~w--nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li---~D~k 1030 (1702)
T KOG0915|consen 956 DLVYKFMQLANHNATW--NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALI---TDSK 1030 (1702)
T ss_pred HHHHHHHHHhhhhchh--hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhc---cChH
Confidence 6666777777654332 45899999999998653200 01223344444444 34 566665554444442 33 3
Q ss_pred HHHH--------HHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 002870 686 NVMD--------TLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRN 728 (872)
Q Consensus 686 ~aid--------~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~ 728 (872)
+++| -|.+-..+..=-||-++.+|+.=+.-|..+..+...+..
T Consensus 1031 ~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpe 1081 (1702)
T KOG0915|consen 1031 KVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPE 1081 (1702)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 3433 333334455556999999999999999987665544443
No 99
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.64 E-value=79 Score=38.99 Aligned_cols=48 Identities=31% Similarity=0.338 Sum_probs=38.3
Q ss_pred hcCChhHHhHHHHHHhhhc--cCCCchHHHHHHHHh-hcCCchHHHHHHHH
Q 002870 661 QYGEQNIRRAVPLALGLLC--ISNPKVNVMDTLSRL-SHDTDSEVAMAAVI 708 (872)
Q Consensus 661 ~~~~~~VR~ga~lALGL~~--agt~~~~aid~L~~l-~~D~d~~Vr~~Aii 708 (872)
-+.+|.||.-|-+||.-.- .++++.++..+|..+ -+||++.||+.|+.
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred hccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4567999999999998663 667777889888766 58999999986543
No 100
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.05 E-value=1.5e+02 Score=34.02 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=52.7
Q ss_pred HHHHhhcCChhHHhHHHHHHhhhccCCC--------chHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 002870 656 LEHLLQYGEQNIRRAVPLALGLLCISNP--------KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 719 (872)
Q Consensus 656 l~~L~~~~~~~VR~ga~lALGL~~agt~--------~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n 719 (872)
+-.++.++|+.+||-++-|+|.+..-.. -++++..|-.++.|+++-|+..|-.|++.+.+.|.-
T Consensus 213 LVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 213 LVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred hhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence 3445688999999999999998864432 345677888889999999999999999999998873
No 101
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.87 E-value=5.4e+02 Score=32.23 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhcCccccCchhHhHHHHHH-HhhhcCCh----hhHHHHHHHHh-h--hhhhhhhhhhHHHHHHhhh-cC
Q 002870 537 EVAQAIIFALMDRSESELGEPLTRLIPLGL-GLLYLGKQ----ESVEATAEVSK-T--FNEKIRKYCDMTLLSCAYA-GT 607 (872)
Q Consensus 537 ~~~e~ll~~L~~~~~~~l~e~~~r~~~lgl-gLl~~G~~----e~a~~ll~~L~-~--~~~~i~r~~~~~~~~lAya-GT 607 (872)
+.+..++..+....++ +++-+|+=++-+ ++++=.-. +-.+.+.+.+. + +..|..|--++++++ -|- -+
T Consensus 81 DlV~~~f~hlLRg~Es--kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLs-rlQ~d~ 157 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTES--KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALS-RLQGDP 157 (892)
T ss_pred hHHHHHHHHHHhcccC--cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHH-HHhcCC
Confidence 4666666666654444 567777766544 44442111 12334444433 2 356788877776643 222 23
Q ss_pred CC--HHHHHHHHHhhcccCCCCccchhhhHhHhhh
Q 002870 608 GN--VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAM 640 (872)
Q Consensus 608 Gn--~~~i~~LL~~~~~~~~d~~~vrr~Avl~igl 640 (872)
+| ..+++-+......|.++ .|||+|...|.-
T Consensus 158 ~dee~~v~n~l~~liqnDpS~--EVRRaaLsnI~v 190 (892)
T KOG2025|consen 158 KDEECPVVNLLKDLIQNDPSD--EVRRAALSNISV 190 (892)
T ss_pred CCCcccHHHHHHHHHhcCCcH--HHHHHHHHhhcc
Confidence 33 45777777777777776 899998887654
No 102
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.00 E-value=4.9e+02 Score=32.64 Aligned_cols=200 Identities=19% Similarity=0.227 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHH-------------HHHHHhcCCC--
Q 002870 43 ALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGT-------------LKAYYETMPD-- 107 (872)
Q Consensus 43 ~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~-------------l~~~ye~~~~-- 107 (872)
+|+--..-++++|+++||+++..|..-..++-|.. ||+.-.|+|-+-+ |..+|-..+.
T Consensus 178 Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKn-------PknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE 250 (877)
T KOG1059|consen 178 ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN-------PQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE 250 (877)
T ss_pred hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC-------CcccccccHHHHHHHhccCCCeehHHHHHHHhhccccC
Confidence 56666777888999999999999999999999988 8888888886544 3444444331
Q ss_pred cch-HHH----HHHHHHHHhhhccCcccccchhhhhcCCCCCCCCc--ccHHHHHHHHHHHHHHHHhccC-ccCH-----
Q 002870 108 SDL-KKY----MADILSVLALTMSAEGERESLKYRLLGSEGDIGSW--GHEYVRNLAGEIAQEYAKRQTD-EASI----- 174 (872)
Q Consensus 108 ~~~-k~~----~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~w--gheYvr~L~~ei~~~y~~~~~~-~~~~----- 174 (872)
|.. |++ .-.|=|-+||.. .+||++=-..+ ++.+= .|+= .+.=|++.-....+. +++.
T Consensus 251 PRLgKKLieplt~li~sT~AmSL----lYECvNTVVa~---s~s~g~~d~~a---siqLCvqKLr~fiedsDqNLKYlgL 320 (877)
T KOG1059|consen 251 PRLGKKLIEPITELMESTVAMSL----LYECVNTVVAV---SMSSGMSDHSA---SIQLCVQKLRIFIEDSDQNLKYLGL 320 (877)
T ss_pred chhhhhhhhHHHHHHHhhHHHHH----HHHHHHHheee---hhccCCCCcHH---HHHHHHHHHhhhhhcCCccHHHHHH
Confidence 211 222 223345555421 23666555544 22221 1332 222233333333322 1221
Q ss_pred ----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccchHHHHHHHHhhcccCCCCChH--HHH
Q 002870 175 ----------DDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDM--LVL 242 (872)
Q Consensus 175 ----------~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~--~vl 242 (872)
++...=-..++=.||.+.++ -+..+-||.+...|++.|-..+..-+..-+- ..++.++ +++
T Consensus 321 lam~KI~ktHp~~Vqa~kdlIlrcL~DkD~------SIRlrALdLl~gmVskkNl~eIVk~LM~~~~-~ae~t~yrdell 393 (877)
T KOG1059|consen 321 LAMSKILKTHPKAVQAHKDLILRCLDDKDE------SIRLRALDLLYGMVSKKNLMEIVKTLMKHVE-KAEGTNYRDELL 393 (877)
T ss_pred HHHHHHhhhCHHHHHHhHHHHHHHhccCCc------hhHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-hccchhHHHHHH
Confidence 23444445677788866654 3556777777778887776655543322221 1122232 577
Q ss_pred HHHHHHHHccC-----CHHHHHHHHHhCC
Q 002870 243 DIAYMIYLKFE-----EFPNALQIALFLD 266 (872)
Q Consensus 243 ~~~~~iy~k~~-----~~~~al~~al~l~ 266 (872)
-.+..||.+.+ +|--++.+.++|-
T Consensus 394 ~~II~iCS~snY~~ItdFEWYlsVlveLa 422 (877)
T KOG1059|consen 394 TRIISICSQSNYQYITDFEWYLSVLVELA 422 (877)
T ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Confidence 77778877643 5556666665543
No 103
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=52.82 E-value=42 Score=31.08 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=47.9
Q ss_pred HHhHHHHHHhhhccCCCch------HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCch---HHHHHHHHhhhhh-ccC
Q 002870 667 IRRAVPLALGLLCISNPKV------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNA---RIAGMLRNLSSYY-YKD 736 (872)
Q Consensus 667 VR~ga~lALGL~~agt~~~------~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~---rv~~~lr~l~s~~-~~d 736 (872)
-|+|+-++|+-.+.+-++. ++++-+.....|+|.-||..|+-|+.-+.--..+. ...+++..|.+.. --|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4788888887776665554 23333344568999999999999998886544431 1222222222221 135
Q ss_pred hhhHHHHHH
Q 002870 737 ANLLFCVRI 745 (872)
Q Consensus 737 ~~~~f~~~l 745 (872)
++++-|+.+
T Consensus 82 ~~Vr~~a~~ 90 (97)
T PF12755_consen 82 ENVRSAAEL 90 (97)
T ss_pred hhHHHHHHH
Confidence 567777654
No 104
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=48.42 E-value=8.1e+02 Score=32.66 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=44.3
Q ss_pred cchhhhHhHhhh--hhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhh--ccCCC--chHHHHHHHHhhcCCchHH
Q 002870 629 AYQGPAVLGIAM--VAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLL--CISNP--KVNVMDTLSRLSHDTDSEV 702 (872)
Q Consensus 629 ~vrr~Avl~igl--I~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~--~agt~--~~~aid~L~~l~~D~d~~V 702 (872)
.|||..+-+|+. +++|++...+-+.+++-.++.+.|+..|.+--=.+.=+ |.|.- ..=++-+|.+-..|+...|
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~V 672 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAV 672 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhh
Confidence 566666655554 44565544445555555556666777776544333321 33333 2223334444467777777
Q ss_pred HHHHHHHHH
Q 002870 703 AMAAVISLG 711 (872)
Q Consensus 703 r~~AiiAlG 711 (872)
-..|+=++.
T Consensus 673 iv~aL~~ls 681 (1431)
T KOG1240|consen 673 IVSALGSLS 681 (1431)
T ss_pred HHHHHHHHH
Confidence 666655544
No 105
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=48.37 E-value=31 Score=42.20 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=64.1
Q ss_pred ccchhhhHhHhhhhhh-cchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhh--hccCCCchHHHHHHHHhhcCCchHHHH
Q 002870 628 EAYQGPAVLGIAMVAM-AEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGL--LCISNPKVNVMDTLSRLSHDTDSEVAM 704 (872)
Q Consensus 628 ~~vrr~Avl~iglI~~-~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL--~~agt~~~~aid~L~~l~~D~d~~Vr~ 704 (872)
+.++++|-+++--.|+ +.+...+-.|-++..+....+|.||..+.++||= +|--|--.+.-+.|.+-.+|.+.+||+
T Consensus 910 ~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V~r 989 (1128)
T COG5098 910 EELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVRR 989 (1128)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHHHH
Confidence 3678899888765544 4333334444445555557899999999999984 344454556667788888999999999
Q ss_pred HHHHHHHH-HcCCC
Q 002870 705 AAVISLGL-IGSGT 717 (872)
Q Consensus 705 ~AiiAlGl-V~aGt 717 (872)
++.+-+.+ ++||+
T Consensus 990 tclmti~fLilagq 1003 (1128)
T COG5098 990 TCLMTIHFLILAGQ 1003 (1128)
T ss_pred HHHHHHHHHHHccc
Confidence 99988775 56665
No 106
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=47.86 E-value=6e+02 Score=32.48 Aligned_cols=189 Identities=21% Similarity=0.208 Sum_probs=97.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCcchHH
Q 002870 33 KDEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKK 112 (872)
Q Consensus 33 ~~~~l~eed~~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~ 112 (872)
.+..|+.|=++|=.+-..+-.| .+ ..-|.+.+.++||...- .|-| |.+|-.+||.-.+
T Consensus 131 ~~~~l~~~l~~ll~eAN~lfar--g~----~eeA~~i~~EvIkqdp~----~~~a-------y~tL~~IyEqrGd----- 188 (895)
T KOG2076|consen 131 GKSKLAPELRQLLGEANNLFAR--GD----LEEAEEILMEVIKQDPR----NPIA-------YYTLGEIYEQRGD----- 188 (895)
T ss_pred cccccCHHHHHHHHHHHHHHHh--CC----HHHHHHHHHHHHHhCcc----chhh-------HHHHHHHHHHccc-----
Confidence 3568888877877777777776 22 25789999999998831 1222 5677777775532
Q ss_pred HHHHHHHHHhhhccCcccccchhhhhcCCCCCCCCcccHHHHHHH---------HHHHHHHHHhccCccCHHHHHHHHHH
Q 002870 113 YMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLA---------GEIAQEYAKRQTDEASIDDLMELVQE 183 (872)
Q Consensus 113 ~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~wgheYvr~L~---------~ei~~~y~~~~~~~~~~~~L~~lv~~ 183 (872)
...||.+-|.+..-++++| -.++ +++ .+..=-|.+....+++. ..++-+
T Consensus 189 -----------------~eK~l~~~llAAHL~p~d~-e~W~-~ladls~~~~~i~qA~~cy~rAI~~~p~n---~~~~~e 246 (895)
T KOG2076|consen 189 -----------------IEKALNFWLLAAHLNPKDY-ELWK-RLADLSEQLGNINQARYCYSRAIQANPSN---WELIYE 246 (895)
T ss_pred -----------------HHHHHHHHHHHHhcCCCCh-HHHH-HHHHHHHhcccHHHHHHHHHHHHhcCCcc---hHHHHH
Confidence 2355566666655555554 2222 221 11111122222211111 233333
Q ss_pred HHHHHhcCCCHHHHHHHHHhcCChh------hhHHH--------hhccchHHHHHHHHhhcccCCCCChH--HHHHHHHH
Q 002870 184 IVAFHMKHNAEPEAVDLLMEVEDLD------LLVEH--------VDATNFKRTCLYLTSAAKYLPGPDDM--LVLDIAYM 247 (872)
Q Consensus 184 iv~~~l~~n~e~eAvdlalE~~~ld------~i~~~--------vd~~~~~rv~~Yl~~~~~~~~~p~~~--~vl~~~~~ 247 (872)
-...+-++|..+.|++-=+++=+++ ++.+. +....-.+...++..-.. ...+.+ ..+.++.+
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s--~~~~~~~~ed~ni~ae 324 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS--KEKDEASLEDLNILAE 324 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hccccccccHHHHHHH
Confidence 4444556666666665444322211 11111 111112444444433322 111111 46778888
Q ss_pred HHHccCCHHHHHHHHHhCCC
Q 002870 248 IYLKFEEFPNALQIALFLDN 267 (872)
Q Consensus 248 iy~k~~~~~~al~~al~l~d 267 (872)
+|++.++|-.++.+.++..+
T Consensus 325 l~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 325 LFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHHhHHHHHhhHHHHHHhc
Confidence 88998888888887766544
No 107
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=47.00 E-value=2.4e+02 Score=36.55 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhcCChhh--------------hHHHhhc-cchHHHHHHHHhhc
Q 002870 178 MELVQEIVAFHMKHNAEPEAVDLLMEVEDLDL--------------LVEHVDA-TNFKRTCLYLTSAA 230 (872)
Q Consensus 178 ~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~--------------i~~~vd~-~~~~rv~~Yl~~~~ 230 (872)
..||...+..++...+|.+|..+. +..|+|+ ++.+|++ .+..-+++++.++.
T Consensus 694 R~LVL~~ir~~Ld~~~Y~~Af~~~-RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~ 760 (928)
T PF04762_consen 694 RALVLAGIRKLLDAKDYKEAFELC-RKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLR 760 (928)
T ss_pred HhHHHHHHHHHHhhccHHHHHHHH-HHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Confidence 478889999999999999999764 5555543 4455555 44456666665444
No 108
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=46.74 E-value=1.1e+02 Score=30.36 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=49.3
Q ss_pred HHHHHHhcCCCHHHHHHHHH-hcCChhhhHHHhhc----------------cchHHHHHHHHhhcccCCCCChH----HH
Q 002870 183 EIVAFHMKHNAEPEAVDLLM-EVEDLDLLVEHVDA----------------TNFKRTCLYLTSAAKYLPGPDDM----LV 241 (872)
Q Consensus 183 ~iv~~~l~~n~e~eAvdlal-E~~~ld~i~~~vd~----------------~~~~rv~~Yl~~~~~~~~~p~~~----~v 241 (872)
+-++.++++-+|.+|+|.++ ...+-+.+...+.+ ..-..++.|+ ++++.+|+-+ .+
T Consensus 23 ~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl~EL~~R~~L~~AL~~Rde~~L~piL~Fl---~k~i~~pr~~~~l~~v 99 (148)
T PF09384_consen 23 SKYDKLLRKFRYKKALDAALVKNKSPEVVVAVLEELIRRGALRAALAGRDEESLEPILKFL---IKNITDPRYTRILVDV 99 (148)
T ss_pred hHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHHHHHHHccHHHHHHHhCCHHHHHHHHHHH---HHhCCCcccHHHHHHH
Confidence 45778889999999999999 55565555544321 2223333443 4566677765 45
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhc
Q 002870 242 LDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSC 278 (872)
Q Consensus 242 l~~~~~iy~k~~~~~~al~~al~l~d~~~i~~i~~~~ 278 (872)
..+++++|... +++...+.+.|..+
T Consensus 100 ~~~ildiY~~~------------~~~s~~v~~~~~~L 124 (148)
T PF09384_consen 100 ANIILDIYSPV------------IGQSPEVDKLFQKL 124 (148)
T ss_pred HHHHHHHHHHH------------hcccHHHHHHHHHH
Confidence 56777776542 34444555556554
No 109
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=45.76 E-value=1.6e+02 Score=34.84 Aligned_cols=107 Identities=18% Similarity=0.153 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCCHHHHH----------HHHHhcCChhhhHHHhhccchHHHHHHHHhhcccCCCCChHHHHHHHHHHH
Q 002870 180 LVQEIVAFHMKHNAEPEAV----------DLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIY 249 (872)
Q Consensus 180 lv~~iv~~~l~~n~e~eAv----------dlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy 249 (872)
.-.++..|.-++|-...|+ +|||++++|+.=.+...+.+......-|-..+.-. -=++++-+-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~------g~~~lAe~c~ 370 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQ------GNIELAEECY 370 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHT------TBHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHc------CCHHHHHHHH
Confidence 3567788888888888887 67888888886666655433322222222222110 0124555556
Q ss_pred HccCCHHHHHHHHHhCCChHHHHHHHHhc---chHHHHHHHHHHHH
Q 002870 250 LKFEEFPNALQIALFLDNMQYVKQIFTSC---DDLLRKKQFCYILA 292 (872)
Q Consensus 250 ~k~~~~~~al~~al~l~d~~~i~~i~~~~---~d~~~~~Qlaf~la 292 (872)
.+.++|...+-+..-.+|.+.++++.+.+ .+..++.|.+|.+.
T Consensus 371 ~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lg 416 (443)
T PF04053_consen 371 QKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLG 416 (443)
T ss_dssp HHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT
T ss_pred HhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcC
Confidence 66677777777777777777777777665 35566666666664
No 110
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=44.76 E-value=3.4e+02 Score=31.55 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=63.0
Q ss_pred chhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc------hHHHHHH------------
Q 002870 630 YQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK------VNVMDTL------------ 691 (872)
Q Consensus 630 vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~------~~aid~L------------ 691 (872)
++..+-++-|+|+=+.|.+.+...++++.|.+ +.+...++-+++++..-.++ ...+..|
T Consensus 251 ~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~ 327 (415)
T PF12460_consen 251 LEILIWITKALVMRGHPLATELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPK 327 (415)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHH
Confidence 44567788899999998887888888776644 78899999999998765221 1223222
Q ss_pred -HHhhcCCchHHHHHHHHHHHHHcCCCCch
Q 002870 692 -SRLSHDTDSEVAMAAVISLGLIGSGTNNA 720 (872)
Q Consensus 692 -~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~ 720 (872)
....+..++..+.+-+.|++.+....+..
T Consensus 328 L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~ 357 (415)
T PF12460_consen 328 LLEGFKEADDEIKSNYLTALSHLLKNVPKS 357 (415)
T ss_pred HHHHHhhcChhhHHHHHHHHHHHHhhCCHH
Confidence 22234556668899999999999988853
No 111
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=44.40 E-value=3.2e+02 Score=26.93 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=9.8
Q ss_pred ccccchhhHHhHhhhcc
Q 002870 422 LLWDVDSGLAQIDKYFH 438 (872)
Q Consensus 422 ~~~~~~~~l~~l~~yL~ 438 (872)
..++.+++...+.+.+.
T Consensus 43 ~~~~~~~A~~~~~~~l~ 59 (234)
T TIGR02521 43 EQGDLEVAKENLDKALE 59 (234)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 34666666666655443
No 112
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=43.76 E-value=5.2e+02 Score=29.13 Aligned_cols=223 Identities=18% Similarity=0.207 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhh--ccccccCCC----ccchhh-hhHHHHHHHHhcCCCc
Q 002870 36 DLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTS--TSSMTSVPK----PLKFLR-PHYGTLKAYYETMPDS 108 (872)
Q Consensus 36 ~l~eed~~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~--tss~tsvpk----plk~l~-~~~~~l~~~ye~~~~~ 108 (872)
+|.|.+.+|..- ++..|++|.-..|-.|++-...+ ...+..-|. -.+|.| ...+.|.++|....
T Consensus 38 ~m~e~e~AL~kA-------i~SgD~DLi~~vLl~L~~~l~~s~f~~il~~~p~a~~l~~~~~r~~~~~~L~~~y~q~d-- 108 (319)
T PF04840_consen 38 KMGEDELALNKA-------IESGDTDLIYLVLLHLKRKLSLSQFFKILNQNPVASNLYKKYCREQDRELLKDFYYQED-- 108 (319)
T ss_pred cCCchHHHHHHH-------HHcCCccHHHHHHHHHHHhCCHHHHHHHHHhCcchHHHHHHHHHhccHHHHHHHHHhcc--
Confidence 566666655444 44788888888888877644332 222233332 123444 34556777777552
Q ss_pred chHHHHHHH-HHHHhhhccCcccccchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHh------ccCccCHHHHHHHH
Q 002870 109 DLKKYMADI-LSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKR------QTDEASIDDLMELV 181 (872)
Q Consensus 109 ~~k~~~Adi-lS~l~~t~~~~~~~~~L~y~L~~~~~d~~~wgheYvr~L~~ei~~~y~~~------~~~~~~~~~L~~lv 181 (872)
....+|-+ +..-+-+-..++..+.|+-+-.. +.-..- +. +..+++++..+. .++.....=+..=|
T Consensus 109 -~~~~~a~~~l~~~~~~~~~~~~~~~L~~a~~~--y~~~k~-~~----f~~~~~e~q~~Ll~~Q~~Le~~~~~~f~~~Sl 180 (319)
T PF04840_consen 109 -RFQELANLHLQEALSQKDVEEKISFLKQAQKL--YSKSKN-DA----FEAKLIEEQIKLLEYQKELEEKYNTNFVGLSL 180 (319)
T ss_pred -hHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH--HHhcch-hH----HHHHHHHHHHHHHHHHHHHHHHhccchhcCCH
Confidence 22333332 22211111111122223222221 110000 22 233344432222 11111111111224
Q ss_pred HHHHHHHhcCCCHHHHHHHH------------------HhcCChhhhHHHhhc----cchHHHHHHHHhhc------ccC
Q 002870 182 QEIVAFHMKHNAEPEAVDLL------------------MEVEDLDLLVEHVDA----TNFKRTCLYLTSAA------KYL 233 (872)
Q Consensus 182 ~~iv~~~l~~n~e~eAvdla------------------lE~~~ld~i~~~vd~----~~~~rv~~Yl~~~~------~~~ 233 (872)
...+..|+.+|....|-.+. .+.++.|.|+++..+ -.|.-....++..- .|+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI 260 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYI 260 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHH
Confidence 56677888888888887664 445566666655431 12222222221111 111
Q ss_pred CCCChHHHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhcc
Q 002870 234 PGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCD 279 (872)
Q Consensus 234 ~~p~~~~vl~~~~~iy~k~~~~~~al~~al~l~d~~~i~~i~~~~~ 279 (872)
+.- .- +--++.|.+.++|.+|...|.+.+|.+.+.++.+.|.
T Consensus 261 ~k~---~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 261 PKI---PD-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCP 302 (319)
T ss_pred HhC---Ch-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 000 01 3456778899999999999999999999999999883
No 113
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=43.72 E-value=98 Score=33.38 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=52.7
Q ss_pred CChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhH
Q 002870 572 GKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM 651 (872)
Q Consensus 572 G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~ 651 (872)
|..+++..+++.+......-......+..|-.|...|+.....+.+.-+.+...+ +..-..-++-.+|-.|+. +.
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~--~~~~~~~l~~~li~~~~~---~~ 198 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD--DPDARNALAWLLIDMGDY---DE 198 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHCTTCHH---HH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCh---HH
Confidence 4444555555554432211112222334455556666655444444443332221 111112223333444444 44
Q ss_pred HHHHHHHHhhc--CChhHHhHHHHHHhhhccCCCchHHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCC
Q 002870 652 AIRSLEHLLQY--GEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 652 ~~~il~~L~~~--~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~-D~d~~Vr~~AiiAlGlV~aGt~ 718 (872)
+..++..+... .||.+. .++|.+....|. ..+|+..+.+... +|++..- ...+|-++...+
T Consensus 199 ~~~~l~~~~~~~~~~~~~~--~~la~~~~~lg~-~~~Al~~~~~~~~~~p~d~~~---~~~~a~~l~~~g 262 (280)
T PF13429_consen 199 AREALKRLLKAAPDDPDLW--DALAAAYLQLGR-YEEALEYLEKALKLNPDDPLW---LLAYADALEQAG 262 (280)
T ss_dssp HHHHHHHHHHH-HTSCCHC--HHHHHHHHHHT--HHHHHHHHHHHHHHSTT-HHH---HHHHHHHHT---
T ss_pred HHHHHHHHHHHCcCHHHHH--HHHHHHhccccc-ccccccccccccccccccccc---cccccccccccc
Confidence 44555544433 234333 234444444443 3456666666544 4443322 234444444444
No 114
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=43.43 E-value=1.3e+02 Score=27.44 Aligned_cols=62 Identities=31% Similarity=0.524 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCcchHHHHH
Q 002870 36 DLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMA 115 (872)
Q Consensus 36 ~l~eed~~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~A 115 (872)
-+-+|-.+|++|++.|=+.+ |.+|.+.++|+|..+ |+.-...+..+|+.- .|..++
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qv-e~nPevtr~A~EN~r-------------------L~ee~rrl~~f~~~g----erE~l~ 76 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQV-EHNPEVTRFAMENIR-------------------LREELRRLQSFYVEG----EREMLL 76 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHH-------------------HHHHHHHHHHHHHhh----HHHHHH
Confidence 34455589999999998888 789999999999742 333344667777422 478888
Q ss_pred HHHHHH
Q 002870 116 DILSVL 121 (872)
Q Consensus 116 dilS~l 121 (872)
..+|.|
T Consensus 77 ~eis~L 82 (86)
T PF12711_consen 77 QEISEL 82 (86)
T ss_pred HHHHHH
Confidence 888776
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=43.31 E-value=1e+02 Score=38.72 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccchHHHHHH--HHhhcccCCCCChH--HHHHHHHHHHHccCC
Q 002870 179 ELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLY--LTSAAKYLPGPDDM--LVLDIAYMIYLKFEE 254 (872)
Q Consensus 179 ~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Y--l~~~~~~~~~p~~~--~vl~~~~~iy~k~~~ 254 (872)
+|++++-+||..|.+|.-||.|++-++.+..-.+.....|..-.-.+ +....+--..|+.. ++|+.+-+.|+++|.
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~ 1160 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA 1160 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999999999999988766666655443222222 22222211112222 799999999999998
Q ss_pred HHHHHHHHHhCCChH-HHHHHHHh
Q 002870 255 FPNALQIALFLDNMQ-YVKQIFTS 277 (872)
Q Consensus 255 ~~~al~~al~l~d~~-~i~~i~~~ 277 (872)
|-.|-...-+.+|-- ..+.++++
T Consensus 1161 Yh~AtKKfTQAGdKl~AMraLLKS 1184 (1416)
T KOG3617|consen 1161 YHAATKKFTQAGDKLSAMRALLKS 1184 (1416)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHhc
Confidence 888877776666543 34444443
No 116
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=43.13 E-value=43 Score=23.35 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=18.9
Q ss_pred HHHHHHHHHhHhcCCCCHHHHHHHHHHH
Q 002870 519 IAFSAISLGLIYVGSCNEEVAQAIIFAL 546 (872)
Q Consensus 519 ~~~AaLALGLi~lGs~n~~~~e~ll~~L 546 (872)
.+.|+.+||-+ +++++++.|++.|
T Consensus 2 R~~Aa~aLg~i----gd~~ai~~L~~~L 25 (27)
T PF03130_consen 2 RRAAARALGQI----GDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHGGG-----SHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCHHHHHHHHHHh
Confidence 46789999988 7788888888765
No 117
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=43.01 E-value=1.1e+02 Score=39.90 Aligned_cols=135 Identities=18% Similarity=0.209 Sum_probs=80.2
Q ss_pred HhhhccCCCchhHHHHHHHHHHhhc--CCCCChhhHHHHHHhhcCCCCHHHHHH---HHHHHHHHhccCC--CHHHHHHH
Q 002870 433 IDKYFHSTDNHVIAGALLGVGIVNC--GIRNDCDPALALLSEYVGREDACIRIG---AIMGLGISYAGTQ--NDQIRHKL 505 (872)
Q Consensus 433 l~~yL~s~~~~~k~GAllaLGli~~--G~~~e~d~~~~lL~~~L~~~~~~v~~g---A~lGLGLay~Gt~--~~~i~e~L 505 (872)
...+|..+++++|-..+-.++-... |.....|-++..|..+|++++...|.+ .+-|+. +|+|.. .+-+.-+|
T Consensus 583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvs-i~VG~rs~seyllPLl 661 (1431)
T KOG1240|consen 583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVS-IFVGWRSVSEYLLPLL 661 (1431)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceE-EEEeeeeHHHHHHHHH
Confidence 3455667778999888888775543 555556779999999999998888865 455543 478876 33344444
Q ss_pred HHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhh--cCccccCchhHhHHHHHHHhhhcCC
Q 002870 506 STILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMD--RSESELGEPLTRLIPLGLGLLYLGK 573 (872)
Q Consensus 506 ~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~--~~~~~l~e~~~r~~~lglgLl~~G~ 573 (872)
.+-|.|.....-+....++. +|+=.|-=...++-+|++...- .++ ..|+|.+++++-..-..+
T Consensus 662 ~Q~ltD~EE~Viv~aL~~ls-~Lik~~ll~K~~v~~i~~~v~PlL~hP----N~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 662 QQGLTDGEEAVIVSALGSLS-ILIKLGLLRKPAVKDILQDVLPLLCHP----NLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHhccCcchhhHHHHHHHHH-HHHHhcccchHHHHHHHHhhhhheeCc----hHHHHHHHHHHHHHHHhh
Confidence 44445654332232233333 4554554444455555553211 233 359998887765444433
No 118
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=42.07 E-value=5.1e+02 Score=28.51 Aligned_cols=166 Identities=12% Similarity=0.014 Sum_probs=81.8
Q ss_pred chhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCC-CCHHHHHHHHHHHHHHhccCC--CH-HHHHHHHHHhcCCCCchH
Q 002870 442 NHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGISYAGTQ--ND-QIRHKLSTILNDAKSPLD 517 (872)
Q Consensus 442 ~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGLay~Gt~--~~-~i~e~L~~~L~d~~~~~e 517 (872)
+..+...+.|+.....|... .+...+...+.. ++.. ..... ++...+.|.. .. ...+.+.. .. ...+..
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~---~A~~~~~~~l~~~P~~~-~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~ 113 (355)
T cd05804 41 TERERAHVEALSAWIAGDLP---KALALLEQLLDDYPRDL-LALKL-HLGAFGLGDFSGMRDHVARVLPL-WA-PENPDY 113 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHCCCcH-HHHHH-hHHHHHhcccccCchhHHHHHhc-cC-cCCCCc
Confidence 34445666677777665433 367766666543 2222 11111 4444444422 22 22233322 21 111112
Q ss_pred HHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhh--hhhhhhh
Q 002870 518 VIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFN--EKIRKYC 595 (872)
Q Consensus 518 ~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~--~~i~r~~ 595 (872)
. .+...+|.++...|+.+-....+....+..+. +.+ -...+|..+...|+-+++...++...... ++.....
T Consensus 114 ~--~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~---~~~-~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 114 W--YLLGMLAFGLEEAGQYDRAEEAARRALELNPD---DAW-AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CcH-HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 1 23334566677777655555555444433222 222 22334555556677777777766544432 1222222
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHhh
Q 002870 596 DMTLLSCAYAGTGNVLKVQNLLGHC 620 (872)
Q Consensus 596 ~~~~~~lAyaGTGn~~~i~~LL~~~ 620 (872)
..+..+..|...|+......+++-+
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3345778889999987766666654
No 119
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.75 E-value=35 Score=38.07 Aligned_cols=78 Identities=28% Similarity=0.491 Sum_probs=55.1
Q ss_pred CCCCHHHH-HHHHHHHHHHH--HhCCCChhhHHHHHHHHHHHHhhhcc--ccccCCCccchhhhhHHHHHHHHhcCCCcc
Q 002870 35 EDLSEEDL-ALKQQLELYVE--RVQDPDPGLQKVALESMRTEIRTSTS--SMTSVPKPLKFLRPHYGTLKAYYETMPDSD 109 (872)
Q Consensus 35 ~~l~eed~-~~k~~l~~~v~--~l~e~d~~l~~~aL~~L~~~i~~~ts--s~tsvpkplk~l~~~~~~l~~~ye~~~~~~ 109 (872)
+++||||. +|=.|| ++.. +=+|+|+.+++--||.|..+.-|-.+ .+-+ +.-|+.|.++|+..++++
T Consensus 231 ee~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~--------kgvYpilRElhk~e~ded 301 (353)
T KOG2973|consen 231 EELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRS--------KGVYPILRELHKWEEDED 301 (353)
T ss_pred cccCHHHHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHh--------cCchHHHHHHhcCCCcHH
Confidence 49999997 455666 3333 55689999999999999887766533 2222 245999999999887776
Q ss_pred hHHHHHHHHHHH
Q 002870 110 LKKYMADILSVL 121 (872)
Q Consensus 110 ~k~~~AdilS~l 121 (872)
.++.+=-+.+++
T Consensus 302 ~~~ace~vvq~L 313 (353)
T KOG2973|consen 302 IREACEQVVQML 313 (353)
T ss_pred HHHHHHHHHHHH
Confidence 555555556655
No 120
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=41.53 E-value=3.3e+02 Score=26.24 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcC--ChhhHHHHHHHHhhhhhhhhhhh
Q 002870 518 VIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLG--KQESVEATAEVSKTFNEKIRKYC 595 (872)
Q Consensus 518 ~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G--~~e~a~~ll~~L~~~~~~i~r~~ 595 (872)
....|.|.++-+++..++-+-+...++.+.+..+ ...+...+-+.+|.+++. +-+++-..+ ....++..+.-
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~---d~~l~~~a~l~LA~~~~~~~~~d~Al~~L---~~~~~~~~~~~ 119 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAP---DPELKPLARLRLARILLQQGQYDEALATL---QQIPDEAFKAL 119 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHH---HhccCcchHHH
Confidence 4457888899999988888777777776654321 233444555666666653 334444444 33334444444
Q ss_pred hHHHHHHhhhcCCCHHHHHH
Q 002870 596 DMTLLSCAYAGTGNVLKVQN 615 (872)
Q Consensus 596 ~~~~~~lAyaGTGn~~~i~~ 615 (872)
.....|-+|..-|+......
T Consensus 120 ~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 120 AAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHH
Confidence 56677888888887655443
No 121
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.25 E-value=37 Score=40.67 Aligned_cols=140 Identities=19% Similarity=0.180 Sum_probs=85.0
Q ss_pred hhhHHHHHHHHHHHHhhhccccccCC--Cccchh-------hhhHHHHHHHHhcCCC--c-chHHHHHHHHHHHhhhccC
Q 002870 60 PGLQKVALESMRTEIRTSTSSMTSVP--KPLKFL-------RPHYGTLKAYYETMPD--S-DLKKYMADILSVLALTMSA 127 (872)
Q Consensus 60 ~~l~~~aL~~L~~~i~~~tss~tsvp--kplk~l-------~~~~~~l~~~ye~~~~--~-~~k~~~AdilS~l~~t~~~ 127 (872)
.++...||.+|.+-|++...=.-.|+ ++-+|- ..|...|+++|=+... + ..---.-..|.||| |-.
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy--~ls 443 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY--NLS 443 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH--hcc
Confidence 47888999999999998844222222 133322 3466667766643210 0 00112334577775 555
Q ss_pred cccc---cchhhhhcCCCCCCCCcccHHHHHHH-----HHHHHHHHHhccCccCHHH-HHHHHHHHHHHHhcCCCHHHHH
Q 002870 128 EGER---ESLKYRLLGSEGDIGSWGHEYVRNLA-----GEIAQEYAKRQTDEASIDD-LMELVQEIVAFHMKHNAEPEAV 198 (872)
Q Consensus 128 ~~~~---~~L~y~L~~~~~d~~~wgheYvr~L~-----~ei~~~y~~~~~~~~~~~~-L~~lv~~iv~~~l~~n~e~eAv 198 (872)
++++ ||++.+|.=.-.|-.-| .-+=-+|+ .|.|..|++..+=.+..-| -.. +==-||.-|+|.||+
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lW-NRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN----lgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLW-NRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN----LGISCMNLGAYKEAV 518 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHH-HHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh----hhhhhhhhhhHHHHH
Confidence 5554 78999999776777778 66666776 6788999876443322100 001 111366679999999
Q ss_pred HHHHhcCC
Q 002870 199 DLLMEVED 206 (872)
Q Consensus 199 dlalE~~~ 206 (872)
..+|++=.
T Consensus 519 ~hlL~AL~ 526 (579)
T KOG1125|consen 519 KHLLEALS 526 (579)
T ss_pred HHHHHHHH
Confidence 99998744
No 122
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.11 E-value=5.4e+02 Score=32.80 Aligned_cols=67 Identities=22% Similarity=0.240 Sum_probs=51.0
Q ss_pred cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhc----CChhhhHHHhhccchHHHHHHHHhhcccCCCCCh
Q 002870 172 ASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEV----EDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDD 238 (872)
Q Consensus 172 ~~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~----~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~ 238 (872)
.+.+.++++...-=.|+.+.|++.+|++--+|+ +.-+.|.+|+|...-..++.||.+....-...+|
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~d 432 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSD 432 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccch
Confidence 445678888888888999999999999999983 4446677788877778888888777665444443
No 123
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=40.91 E-value=1.5e+02 Score=32.42 Aligned_cols=50 Identities=26% Similarity=0.333 Sum_probs=28.9
Q ss_pred HHHHHHHHHh--hcCChhHHhHHHHHHhhhccCCCch--HHHHHHHHhhcCCch
Q 002870 651 MAIRSLEHLL--QYGEQNIRRAVPLALGLLCISNPKV--NVMDTLSRLSHDTDS 700 (872)
Q Consensus 651 ~~~~il~~L~--~~~~~~VR~ga~lALGL~~agt~~~--~aid~L~~l~~D~d~ 700 (872)
...|++.+|. .++...++..++--+.++.-|+++. .++..|..++.+++.
T Consensus 114 agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~ 167 (254)
T PF04826_consen 114 AGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDM 167 (254)
T ss_pred HHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHH
Confidence 3445555443 2223445555665677777777766 556667777776654
No 124
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=40.47 E-value=5.6e+02 Score=28.57 Aligned_cols=186 Identities=16% Similarity=0.123 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCcchHHHHHHHHHHHhhhccCcccccchhhhhcCCCC
Q 002870 64 KVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEG 143 (872)
Q Consensus 64 ~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~ 143 (872)
...++.+++.|+.-|+-++ .+|.+...+-..+=...+.+-++.+..++++-- .|+
T Consensus 35 ~~~~~~~~~~IK~~t~~fS-------~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~----------~L~-------- 89 (297)
T PF13170_consen 35 AERFKEISKYIKKNTGWFS-------PLRGNHRFILAALLDISFEDPEEAFKEVLDIYE----------KLK-------- 89 (297)
T ss_pred HHHHHHHHHHHHHcccccc-------cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHH----------HHH--------
Confidence 5678888899998765332 356665444443333333223666777766553 121
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHhccCccC---HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhh-----
Q 002870 144 DIGSWGHEYVRNLAGEIAQEYAKRQTDEAS---IDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVD----- 215 (872)
Q Consensus 144 d~~~wgheYvr~L~~ei~~~y~~~~~~~~~---~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd----- 215 (872)
+-+-|.++|.--.+.-|... .+..+.++- ...+-....+-.||.....+++-|+=||.-.+..+.+-+.++
T Consensus 90 ~~gFk~~~y~~laA~~i~~~-~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~ 168 (297)
T PF13170_consen 90 EAGFKRSEYLYLAALIILEE-EEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCYQK 168 (297)
T ss_pred HhccCccChHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHHHHHHHHHH
Confidence 23456677765444444433 221111111 246677777888899999999999999998777776654432
Q ss_pred -------ccchHHHHHHHHhhcccCCCCChHHHHHHHHHHHHccC-----CHHHHHHHHHhCCChH-HHHHHHH
Q 002870 216 -------ATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFE-----EFPNALQIALFLDNMQ-YVKQIFT 276 (872)
Q Consensus 216 -------~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~k~~-----~~~~al~~al~l~d~~-~i~~i~~ 276 (872)
++|.-+.+.++++......++. ..=...+.+.+.+.+ .|...++++-.+++++ .+.+.+.
T Consensus 169 L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~-v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ 241 (297)
T PF13170_consen 169 LADAGFKKGNDLQFLSHILALSEGDDQEK-VARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIK 241 (297)
T ss_pred HHHhCCCCCcHHHHHHHHHHhccccchHH-HHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHH
Confidence 3556677777776665433222 111112223333322 3667777776666665 4333333
No 125
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=40.15 E-value=1.1e+02 Score=38.59 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch----HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHH
Q 002870 650 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV----NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGM 725 (872)
Q Consensus 650 e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~----~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~ 725 (872)
+-+++.+....+. +--.|.....++..+--==|+. .....+..+.+|++..||.|++-.+--++..--.+..-..
T Consensus 557 ~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~ 635 (759)
T KOG0211|consen 557 EEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEE 635 (759)
T ss_pred HhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHH
Confidence 4455666655553 4578888888888553222222 2234456779999999999999999888887665544444
Q ss_pred HHHhhhhhc--cChhhHHHHHHHHhhhhc
Q 002870 726 LRNLSSYYY--KDANLLFCVRIAQGLVHM 752 (872)
Q Consensus 726 lr~l~s~~~--~d~~~~f~~~lAqGll~~ 752 (872)
++++..... .|.+.+|.+..|+|.+.+
T Consensus 636 v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 636 VLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 444444333 456799999999998865
No 126
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.10 E-value=4.5e+02 Score=33.57 Aligned_cols=97 Identities=19% Similarity=0.185 Sum_probs=53.5
Q ss_pred hHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHh-hcCCC-----CHHHHHH-HH----HHHHHHhccCC
Q 002870 429 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSE-YVGRE-----DACIRIG-AI----MGLGISYAGTQ 497 (872)
Q Consensus 429 ~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~-~L~~~-----~~~v~~g-A~----lGLGLay~Gt~ 497 (872)
-++..-++|...++|+.-.|+=|+-...- ..++ .++..|.+ |.+.+ +..+++| |+ .++|=...+..
T Consensus 769 vl~i~ld~LkdedsyvyLnaI~gv~~Lce-vy~e--~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~ 845 (982)
T KOG4653|consen 769 VLAIALDTLKDEDSYVYLNAIRGVVSLCE-VYPE--DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK 845 (982)
T ss_pred HHHHHHHHhcccCceeeHHHHHHHHHHHH-hcch--hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH
Confidence 35556677888999999999988766543 3333 48888888 55432 3456666 22 23443333322
Q ss_pred CHHHHHHHHHHhcCCCCchHHHHHHHHHHHhH
Q 002870 498 NDQIRHKLSTILNDAKSPLDVIAFSAISLGLI 529 (872)
Q Consensus 498 ~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi 529 (872)
+.+....+..+.|++.....++.|.+|.=+.
T Consensus 846 -~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 846 -AVLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred -HHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 1333333334445533334455555554443
No 127
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.39 E-value=1.6e+02 Score=35.51 Aligned_cols=95 Identities=17% Similarity=0.272 Sum_probs=54.1
Q ss_pred HHHHHhcCCCHHHHHHHHHhcC----------ChhhhHHHhhccc-hHHHHHHHHhhc-ccCCC--C--Ch---H---HH
Q 002870 184 IVAFHMKHNAEPEAVDLLMEVE----------DLDLLVEHVDATN-FKRTCLYLTSAA-KYLPG--P--DD---M---LV 241 (872)
Q Consensus 184 iv~~~l~~n~e~eAvdlalE~~----------~ld~i~~~vd~~~-~~rv~~Yl~~~~-~~~~~--p--~~---~---~v 241 (872)
++..++++++..+|+.++...+ .|-.|.+++-+-. -..-..++..+- .+..+ | +. . .|
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d~V 493 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRDPV 493 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH
Confidence 3347889999999999998865 2333333332210 111122222222 22211 2 11 0 23
Q ss_pred ---HHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhc
Q 002870 242 ---LDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSC 278 (872)
Q Consensus 242 ---l~~~~~iy~k~~~~~~al~~al~l~d~~~i~~i~~~~ 278 (872)
.+..+.-.++.++|..|+..|+++++.|+.-++....
T Consensus 494 ~~~aRRfFhhLLR~~rfekAFlLAvdi~~~DLFmdlh~~A 533 (545)
T PF11768_consen 494 SDLARRFFHHLLRYQRFEKAFLLAVDIGDRDLFMDLHYLA 533 (545)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccchHHHHHHHHHH
Confidence 3334444445678999999999999999988887643
No 128
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=38.64 E-value=3e+02 Score=35.74 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=88.5
Q ss_pred HHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHH----HhhcCChhHHhHHHHHHhhhc-cCCCch
Q 002870 611 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH----LLQYGEQNIRRAVPLALGLLC-ISNPKV 685 (872)
Q Consensus 611 ~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~----L~~~~~~~VR~ga~lALGL~~-agt~~~ 685 (872)
.++..||....+..+ .||..|.=|+|.|.-+-|. +-+...++. +..-.++..=.|+|+|+|-+. +|==-+
T Consensus 341 ~vie~Lls~l~d~dt---~VrWSaAKg~grvt~rlp~--~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDT---VVRWSAAKGLGRVTSRLPP--ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcc---hhhHHHHHHHHHHHccCcH--HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 456677777654433 7999999999999999884 555554443 322223555669999999773 333333
Q ss_pred ----HHHHHHHHhhc--------CCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhh------ccChhhHHHHHHHH
Q 002870 686 ----NVMDTLSRLSH--------DTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYY------YKDANLLFCVRIAQ 747 (872)
Q Consensus 686 ----~aid~L~~l~~--------D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~s~~------~~d~~~~f~~~lAq 747 (872)
+++.++.+-.| -....||-+|....=-+.=+-+...+..++.+|++-. .++.++|.++.-|.
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 55655554433 2345688888776555543333334666777776642 45667888877665
Q ss_pred hhhhcCC-Cce
Q 002870 748 GLVHMGK-GLL 757 (872)
Q Consensus 748 Gll~~G~-g~~ 757 (872)
.=+.|. ||.
T Consensus 496 -qE~VGR~~n~ 505 (1133)
T KOG1943|consen 496 -QENVGRQGNF 505 (1133)
T ss_pred -HHHhccCCCC
Confidence 345676 777
No 129
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.38 E-value=9.8e+02 Score=30.74 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=47.8
Q ss_pred hhccCCCchhHHHHHHHHHHhhcCCCC----ChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 002870 435 KYFHSTDNHVIAGALLGVGIVNCGIRN----DCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLST 507 (872)
Q Consensus 435 ~yL~s~~~~~k~GAllaLGli~~G~~~----e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~ 507 (872)
.+++++...+|++++.-+.-.--.+.. ....+++...++|.+.++++-..|+=|+-.. +--.++++.+.|..
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~L-cevy~e~il~dL~e 809 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSL-CEVYPEDILPDLSE 809 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHH-HHhcchhhHHHHHH
Confidence 445677889999999877654332211 1124677888899998888777777766543 22256778877776
No 130
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.10 E-value=9.6e+02 Score=30.56 Aligned_cols=87 Identities=14% Similarity=0.018 Sum_probs=62.9
Q ss_pred chhHHHHHHHhhhhccccchhh-HHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHH
Q 002870 408 EHGKMSAAASLGMILLWDVDSG-LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAI 486 (872)
Q Consensus 408 ~~~k~~A~aslGlI~~~~~~~~-l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~ 486 (872)
.-.|.+|...+.-|...-+.+- +-.|.+.....++|+|..|..|+--.|.--.++-+.....+...|.+.++.+-..|+
T Consensus 122 ~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv 201 (968)
T KOG1060|consen 122 QLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAV 201 (968)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHH
Confidence 3467777777777765544442 445677777889999999999999888755554444566666677788888888888
Q ss_pred HHHHHHhc
Q 002870 487 MGLGISYA 494 (872)
Q Consensus 487 lGLGLay~ 494 (872)
++.--++.
T Consensus 202 ~AF~evCP 209 (968)
T KOG1060|consen 202 MAFEEVCP 209 (968)
T ss_pred HHHHHhch
Confidence 88766543
No 131
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.55 E-value=1.3e+02 Score=39.08 Aligned_cols=88 Identities=19% Similarity=0.185 Sum_probs=62.1
Q ss_pred ccchhhhHhHhhhhhhcc-hhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch--HHHHHHHHhhcCCchHHHH
Q 002870 628 EAYQGPAVLGIAMVAMAE-ELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV--NVMDTLSRLSHDTDSEVAM 704 (872)
Q Consensus 628 ~~vrr~Avl~iglI~~~~-~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~--~aid~L~~l~~D~d~~Vr~ 704 (872)
+++|++|.+++|-.|+=. +...+..+-+|.-+..+.+|.||..+-+|+|=+-..-||. .--+-|-+.++|++..||.
T Consensus 937 p~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vRk 1016 (1251)
T KOG0414|consen 937 PELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRK 1016 (1251)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHHHH
Confidence 478999999999766543 3333444555566666889999999999998553333321 2234567778999999999
Q ss_pred HHHHHHHHHcC
Q 002870 705 AAVISLGLIGS 715 (872)
Q Consensus 705 ~AiiAlGlV~a 715 (872)
+|++-|..+..
T Consensus 1017 ta~lvlshLIL 1027 (1251)
T KOG0414|consen 1017 TALLVLSHLIL 1027 (1251)
T ss_pred HHHHHHHHHHH
Confidence 99988876543
No 132
>PLN03077 Protein ECB2; Provisional
Probab=37.31 E-value=9.8e+02 Score=30.43 Aligned_cols=23 Identities=22% Similarity=0.041 Sum_probs=15.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhc
Q 002870 182 QEIVAFHMKHNAEPEAVDLLMEV 204 (872)
Q Consensus 182 ~~iv~~~l~~n~e~eAvdlalE~ 204 (872)
..++.-+.+.|...+|+.+.-+.
T Consensus 156 n~li~~~~~~g~~~~A~~~f~~M 178 (857)
T PLN03077 156 NVLVGGYAKAGYFDEALCLYHRM 178 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 34555666777777777776543
No 133
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=36.81 E-value=3.5e+02 Score=29.88 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=44.2
Q ss_pred cchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHH-------hhhccC--------CCchHHHHHHHH
Q 002870 629 AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLAL-------GLLCIS--------NPKVNVMDTLSR 693 (872)
Q Consensus 629 ~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lAL-------GL~~ag--------t~~~~aid~L~~ 693 (872)
.+|..++-++|+.++=+..-......+|.+..+.+++.||-.+.-++ |..... .....+.++|.+
T Consensus 42 ~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~ 121 (298)
T PF12719_consen 42 AVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTK 121 (298)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHH
Confidence 56666666666666655522222223333333444555554433322 221111 233566777777
Q ss_pred hhcCCchHHHHHHHHHHHHHc
Q 002870 694 LSHDTDSEVAMAAVISLGLIG 714 (872)
Q Consensus 694 l~~D~d~~Vr~~AiiAlGlV~ 714 (872)
+..+.++.++..|+-+++=++
T Consensus 122 ~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 122 FLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHhcCCHHHHHHHHHHHHHHH
Confidence 766667677766666665443
No 134
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=36.08 E-value=68 Score=37.52 Aligned_cols=88 Identities=24% Similarity=0.367 Sum_probs=46.9
Q ss_pred HHHHHhcCChhhhHHHhhccchHHHH---HHHHhhcccCCCCChH-HHHHHHHHHHHccCCHHHHHHHHHh---CCCh--
Q 002870 198 VDLLMEVEDLDLLVEHVDATNFKRTC---LYLTSAAKYLPGPDDM-LVLDIAYMIYLKFEEFPNALQIALF---LDNM-- 268 (872)
Q Consensus 198 vdlalE~~~ld~i~~~vd~~~~~rv~---~Yl~~~~~~~~~p~~~-~vl~~~~~iy~k~~~~~~al~~al~---l~d~-- 268 (872)
+++-||.+|-+.-..-++ +-+|.| .|...|- ..|... -.|+++..++.|.+.|..|-..|=+ ++-.
T Consensus 260 lgl~iEl~Rr~l~~~~~~--~~kR~lELAAYFThc~---LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 260 LGLSIELERRELPKDPVE--DQKRNLELAAYFTHCK---LQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHHCTS-TTTHH--HHHHHHHHHHHHCCS------HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHHhccccchh--hHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 466777766553222221 234544 5654443 233333 5899999999999999998866644 3311
Q ss_pred --HHHHHHHHhcc-hHHHHHHHHHH
Q 002870 269 --QYVKQIFTSCD-DLLRKKQFCYI 290 (872)
Q Consensus 269 --~~i~~i~~~~~-d~~~~~Qlaf~ 290 (872)
+..++|+..|+ ++.-+.||-|+
T Consensus 335 ~a~qArKil~~~e~~~tDa~~i~yD 359 (422)
T PF06957_consen 335 VAEQARKILQACERNPTDAHEIDYD 359 (422)
T ss_dssp HHHHHHHHHHHHCCS--BSS--S--
T ss_pred HHHHHHHHHHHHhcCCCCceecCCC
Confidence 35666777663 44445555554
No 135
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=34.53 E-value=2.6e+02 Score=25.62 Aligned_cols=81 Identities=20% Similarity=0.144 Sum_probs=52.9
Q ss_pred HHhHhhhccCCCchhHHHHHHHHHHh-hcCC-C-CChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHH
Q 002870 430 LAQIDKYFHSTDNHVIAGALLGVGIV-NCGI-R-NDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLS 506 (872)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli-~~G~-~-~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~ 506 (872)
++..-.++.++...+|+.++.-|.-. .... . -..+.++.++...|.++++++=..|+=||....- ...+++...|.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~-~~p~~vl~~L~ 83 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD-RHPDEVLPILL 83 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH-HChHHHHHHHH
Confidence 44445567778888999998887643 3333 1 1123577788888999998888888888765322 22335777777
Q ss_pred HHhcC
Q 002870 507 TILND 511 (872)
Q Consensus 507 ~~L~d 511 (872)
....|
T Consensus 84 ~~y~~ 88 (92)
T PF10363_consen 84 DEYAD 88 (92)
T ss_pred HHHhC
Confidence 65543
No 136
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.73 E-value=79 Score=38.74 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=58.7
Q ss_pred ch-hHHHHHHHhhhhccccch---hhHHhHhhhc----cCCCchhHHHHHHHHHHhhcCCCCCh-----hhHHHHHHhhc
Q 002870 408 EH-GKMSAAASLGMILLWDVD---SGLAQIDKYF----HSTDNHVIAGALLGVGIVNCGIRNDC-----DPALALLSEYV 474 (872)
Q Consensus 408 ~~-~k~~A~aslGlI~~~~~~---~~l~~l~~yL----~s~~~~~k~GAllaLGli~~G~~~e~-----d~~~~lL~~~L 474 (872)
+| .|=++..++|.|--|-.+ +.+..|-+|| .+..+.+|.-.+-.|+-....+..+. .|++.-|..-+
T Consensus 406 ~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l 485 (885)
T KOG2023|consen 406 EWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL 485 (885)
T ss_pred hhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH
Confidence 36 467778888888765332 2344444543 35677888888888887655443331 13333333334
Q ss_pred CCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHh
Q 002870 475 GREDACIRIGAIMGLGISYAGTQNDQIRHKLSTIL 509 (872)
Q Consensus 475 ~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L 509 (872)
-+++..+|-+||.+.... .|+.-+.|.|.+
T Consensus 486 lD~NK~VQEAAcsAfAtl-----eE~A~~eLVp~l 515 (885)
T KOG2023|consen 486 LDSNKKVQEAACSAFATL-----EEEAGEELVPYL 515 (885)
T ss_pred hcccHHHHHHHHHHHHHH-----HHhccchhHHHH
Confidence 467889999999997753 344555555554
No 137
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=32.87 E-value=2.1e+02 Score=26.22 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=32.3
Q ss_pred chHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 002870 684 KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRN 728 (872)
Q Consensus 684 ~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~ 728 (872)
-..+++++....+|+|++|=.+||=+++.+.-...+.-+..++++
T Consensus 41 ~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~~ 85 (92)
T PF10363_consen 41 IPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLDE 85 (92)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 346677888889999999999999888777655554334444444
No 138
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=31.83 E-value=8.4e+02 Score=28.03 Aligned_cols=130 Identities=12% Similarity=0.013 Sum_probs=60.3
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHH
Q 002870 485 AIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPL 564 (872)
Q Consensus 485 A~lGLGLay~Gt~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~l 564 (872)
..+.-|+.....++.+-.+.......+...... .+.+..+.+....++.+..+..+....+..+ ..........
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~---~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p---~~~l~~~~~~ 159 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV---LNLIKAAEAAQQRGDEARANQHLEEAAELAG---NDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---cCchHHHHHH
Confidence 344556666666665444333322221111111 2344445555555666666655554322211 1111111111
Q ss_pred HHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcc
Q 002870 565 GLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQ 622 (872)
Q Consensus 565 glgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~ 622 (872)
+--.+..|+.+++...++.+.... |-.. ......+.+|..+|+-....+++.....
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~-~~l~ll~~~~~~~~d~~~a~~~l~~l~k 215 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHK-EVLKLAEEAYIRSGAWQALDDIIDNMAK 215 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333444566666666666655432 1111 1334566777777777666666655543
No 139
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.52 E-value=1.5e+02 Score=37.59 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=56.0
Q ss_pred HHHHHhcCChhhhHHHhhccchHHHH---HHHHhhcccCCCCChH-HHHHHHHHHHHccCCHHHHHHHHHhCCC------
Q 002870 198 VDLLMEVEDLDLLVEHVDATNFKRTC---LYLTSAAKYLPGPDDM-LVLDIAYMIYLKFEEFPNALQIALFLDN------ 267 (872)
Q Consensus 198 vdlalE~~~ld~i~~~vd~~~~~rv~---~Yl~~~~~~~~~p~~~-~vl~~~~~iy~k~~~~~~al~~al~l~d------ 267 (872)
++|.+|.+|-+ +.+.+-.+.| .|...|- .+|... -.|+++++.|.|+++|.+|-..|.+|-.
T Consensus 1047 ~gL~~E~~Rr~-----l~~~~~~~~~ElAaYFt~~~---Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1047 VGLSVELERRK-----LKKPNLEQQLELAAYFTHCK---LQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred hhheeeeeecc-----cCCchHHHHHHHHHHhhcCC---CCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence 56777777755 3445555553 3443322 344443 5889999999999999999877765421
Q ss_pred -hHHHHHHHHhc-chHHHHHHHHHHH
Q 002870 268 -MQYVKQIFTSC-DDLLRKKQFCYIL 291 (872)
Q Consensus 268 -~~~i~~i~~~~-~d~~~~~Qlaf~l 291 (872)
.+.++++..++ .|+.-++||-|+-
T Consensus 1119 ~A~q~rki~~a~eknp~Da~~l~yd~ 1144 (1202)
T KOG0292|consen 1119 VAEQARKIKQAAEKNPTDAYELNYDP 1144 (1202)
T ss_pred HHHHHHHHHHHhhcCcccccccCccc
Confidence 14566677766 4777777877653
No 140
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.37 E-value=4.1e+02 Score=33.36 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccchHHHHHHHHhhcccCCCCChHHHHHHHHHHHHcc
Q 002870 173 SIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKF 252 (872)
Q Consensus 173 ~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~k~ 252 (872)
+.+.|..|..++-....++=.|.++-.-|.+.+|.+.=.+.++ .+|++..=.. ..+++
T Consensus 489 d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle------------------~E~~~~~qV~----lLL~m 546 (829)
T KOG2280|consen 489 DEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLE------------------LEPRSGEQVP----LLLKM 546 (829)
T ss_pred chHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHh------------------cCCCccchhH----HHhcc
Confidence 3455666666665555556678888888888888876555553 2344332111 23477
Q ss_pred CCHHHHHHHHHhCCChHHHHHHHHhcchHHHHHHHHHHHH
Q 002870 253 EEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILA 292 (872)
Q Consensus 253 ~~~~~al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~la 292 (872)
+++..||+.|++.+|+++|..++-.+.+.+.+-++--.|-
T Consensus 547 ~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~ 586 (829)
T KOG2280|consen 547 KDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLR 586 (829)
T ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988777666655544443
No 141
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=31.15 E-value=27 Score=39.35 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhhccCcc------cccchhhhhcC-CCCCCCCcccHHHHHHHHHHHHHHHHhccC---ccCHHHHHHH
Q 002870 111 KKYMADILSVLALTMSAEG------ERESLKYRLLG-SEGDIGSWGHEYVRNLAGEIAQEYAKRQTD---EASIDDLMEL 180 (872)
Q Consensus 111 k~~~AdilS~l~~t~~~~~------~~~~L~y~L~~-~~~d~~~wgheYvr~L~~ei~~~y~~~~~~---~~~~~~L~~l 180 (872)
++.=|..++.|+++-|++- +-.+|.|.+.. ...|...| .++..+|--++.+.|++.++- -+ ..+.++
T Consensus 212 ~E~EANFiayLac~~s~d~~frYSgy~~~l~y~l~~l~~~d~e~~-~~l~~~l~~~v~~d~~~~~~fW~~y~--~~i~~~ 288 (318)
T PF12725_consen 212 SEDEANFIAYLACINSPDPYFRYSGYLFALRYCLNALYRKDPEAY-KELYSQLSPGVKKDLKENRAFWQKYE--GPIEEV 288 (318)
T ss_pred CHHHHHHHHHHHHhcCCChheeHHHHHHHHHHHHHHHHhcCHHHH-HHHHHhCCHHHHHHHHHHHHHHHHhc--chHHHH
Confidence 5666888999998777652 44678898887 45788887 788888888888877765431 11 256777
Q ss_pred HHHHHHHHhcCCCHH
Q 002870 181 VQEIVAFHMKHNAEP 195 (872)
Q Consensus 181 v~~iv~~~l~~n~e~ 195 (872)
.+.+.+-++|.|.-+
T Consensus 289 ~~~~yd~yLKaN~q~ 303 (318)
T PF12725_consen 289 SDFVYDTYLKANNQE 303 (318)
T ss_pred HHHHHHHHHHhcCch
Confidence 888899999988543
No 142
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=30.73 E-value=5.2e+02 Score=26.81 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=56.5
Q ss_pred hcCChhHHhHHHHHHhhhccCCC-chHH-HHHHHHhhcCCchHHHHHHHHHHHHHcCCCC--chH------HHHHHHHhh
Q 002870 661 QYGEQNIRRAVPLALGLLCISNP-KVNV-MDTLSRLSHDTDSEVAMAAVISLGLIGSGTN--NAR------IAGMLRNLS 730 (872)
Q Consensus 661 ~~~~~~VR~ga~lALGL~~agt~-~~~a-id~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~--n~r------v~~~lr~l~ 730 (872)
.+.+..||..+--+|--++-..+ ..++ ...+....++.+..||..++-.+..+.-..+ .+. +.++.+.+.
T Consensus 104 ~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~ 183 (228)
T PF12348_consen 104 GDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALV 183 (228)
T ss_dssp G---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHH
Confidence 34567899999888888877777 6677 8889999999999999999888888776666 111 223333333
Q ss_pred hhh-ccChhhHHHHHHHHhhhh
Q 002870 731 SYY-YKDANLLFCVRIAQGLVH 751 (872)
Q Consensus 731 s~~-~~d~~~~f~~~lAqGll~ 751 (872)
+.. ..+|.+|-.++-+...++
T Consensus 184 ~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 184 KLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHH
Confidence 332 356777777777766653
No 143
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=30.63 E-value=77 Score=23.18 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHH
Q 002870 48 LELYVERVQDPDPGLQKVALESMRTEI 74 (872)
Q Consensus 48 l~~~v~~l~e~d~~l~~~aL~~L~~~i 74 (872)
++.++..|+.+++++++.|+..|+.+.
T Consensus 14 i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 14 LPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 788999999999999999999998764
No 144
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=30.12 E-value=1.4e+03 Score=30.23 Aligned_cols=291 Identities=12% Similarity=0.080 Sum_probs=154.0
Q ss_pred HHHhhhhc--cccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCC-------HHHHHHH
Q 002870 415 AASLGMIL--LWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED-------ACIRIGA 485 (872)
Q Consensus 415 ~aslGlI~--~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~-------~~v~~gA 485 (872)
...+|.++ .|+.++|...+.+-+...... ..++.+++.++... ..+.+..++........ ...+..+
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~--~~a~~~L~~l~~~~--~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~ 463 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMDPGN--TNAVRGLANLYRQQ--SPEKALAFIASLSASQRRSIDDIERSLQNDR 463 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhc--CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence 33445444 578888888887766432222 24567777766432 22346666654322110 1122234
Q ss_pred HHHHHHHhccCCC-HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHH
Q 002870 486 IMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIP 563 (872)
Q Consensus 486 ~lGLGLay~Gt~~-~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~ 563 (872)
...+|-++...++ ++..+.+...+. +++ +. .+-+.+|.++.-.++.+.+...++.++...+. +.-.++ +
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~----~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~---~~~~~~-a 534 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPG-SV----WLTYRLAQDLRQAGQRSQADALMRRLAQQKPN---DPEQVY-A 534 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHH-H
Confidence 4556666666555 456666666664 332 22 25678888888888887777777666543322 222222 2
Q ss_pred HHHHhhhcCChhhHHHHHHHHhhh--hhhhh------hhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhH
Q 002870 564 LGLGLLYLGKQESVEATAEVSKTF--NEKIR------KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAV 635 (872)
Q Consensus 564 lglgLl~~G~~e~a~~ll~~L~~~--~~~i~------r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Av 635 (872)
.++-+...|+.+++...++.+... .+.+. .....+..+-+|...|+......++.. +.. +.+....
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---~p~---~~~~~~~ 608 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---QPP---STRIDLT 608 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---CCC---CchHHHH
Confidence 344444456666666655544321 01111 111234556667888998877777762 222 3333444
Q ss_pred hHhhhhhhcchhhHhHHHHHHHHHhhcC--ChhHHhHHHHHHhhhccCCCchHHHHHHHHhhc-CCchHHHHHHHHHHHH
Q 002870 636 LGIAMVAMAEELGLEMAIRSLEHLLQYG--EQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH-DTDSEVAMAAVISLGL 712 (872)
Q Consensus 636 l~iglI~~~~~~g~e~~~~il~~L~~~~--~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~-D~d~~Vr~~AiiAlGl 712 (872)
+|-.+...++. +.+...+...+... ++..+.+.+.++ ...| -..++++.+.++.. ++++. ++...+|.
T Consensus 609 La~~~~~~g~~---~~A~~~y~~al~~~P~~~~a~~~la~~~--~~~g-~~~eA~~~l~~ll~~~p~~~---~~~~~la~ 679 (1157)
T PRK11447 609 LADWAQQRGDY---AAARAAYQRVLTREPGNADARLGLIEVD--IAQG-DLAAARAQLAKLPATANDSL---NTQRRVAL 679 (1157)
T ss_pred HHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHCC-CHHHHHHHHHHHhccCCCCh---HHHHHHHH
Confidence 55555555665 77888887776543 344444333322 2222 34467777777654 33332 22344555
Q ss_pred HcCCCCc-hHHHHHHHHhhhhh
Q 002870 713 IGSGTNN-ARIAGMLRNLSSYY 733 (872)
Q Consensus 713 V~aGt~n-~rv~~~lr~l~s~~ 733 (872)
+....++ .+..++++++.+..
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhC
Confidence 5555554 34456666655543
No 145
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=29.45 E-value=1e+03 Score=29.40 Aligned_cols=154 Identities=18% Similarity=0.094 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhhcCccccCchhHhHHHHH-HHhhhcCChh----hHHHHHHHHhh---hhhhhhhhhhHHHHHHhhhcCC
Q 002870 537 EVAQAIIFALMDRSESELGEPLTRLIPLG-LGLLYLGKQE----SVEATAEVSKT---FNEKIRKYCDMTLLSCAYAGTG 608 (872)
Q Consensus 537 ~~~e~ll~~L~~~~~~~l~e~~~r~~~lg-lgLl~~G~~e----~a~~ll~~L~~---~~~~i~r~~~~~~~~lAyaGTG 608 (872)
+.++.++..+....++ +++-+|+=++. +++++=.-++ -+..+++.|.. +.+|..|.-++.++.-----+|
T Consensus 87 ~~V~~~~~h~lRg~es--kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 87 ELVAGTFYHLLRGTES--KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred HHHHHHHHHHHhcccC--cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 3555555555443333 57777776554 3555543333 23344444432 3567788777766543334466
Q ss_pred CH--HHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhh---------------HhHHHHHHHH-----------H-
Q 002870 609 NV--LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG---------------LEMAIRSLEH-----------L- 659 (872)
Q Consensus 609 n~--~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g---------------~e~~~~il~~-----------L- 659 (872)
|. ..+.-|+.....|.++ .|||.|.+.|.-=-.--|-- ++.+..-+.. |
T Consensus 165 neen~~~n~l~~~vqnDPS~--EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ 242 (885)
T COG5218 165 NEENRIVNLLKDIVQNDPSD--EVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLM 242 (885)
T ss_pred ChHHHHHHHHHHHHhcCcHH--HHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhh
Confidence 64 3445555666667666 89999887664211111100 0111111111 1
Q ss_pred ---hhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHh
Q 002870 660 ---LQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL 694 (872)
Q Consensus 660 ---~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l 694 (872)
+.+.+-.||.++.=+++-...-+.+.+++++|+++
T Consensus 243 ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~l 280 (885)
T COG5218 243 EWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFL 280 (885)
T ss_pred hhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 13345677888888888888888888999999888
No 146
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=29.33 E-value=1.2e+02 Score=29.23 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=22.0
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 002870 687 VMDTLSRLSHDTDSEVAMAAVISLGLIGS 715 (872)
Q Consensus 687 aid~L~~l~~D~d~~Vr~~AiiAlGlV~a 715 (872)
+-+.+..+++++|+.||..|+.++..++.
T Consensus 87 ~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 87 AKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44556677788999999999999887754
No 147
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=28.02 E-value=7.6e+02 Score=31.66 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCC----chHHHHHH----HHhhcCCchHHHHHHHHHHHHHcCCCCchH
Q 002870 650 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP----KVNVMDTL----SRLSHDTDSEVAMAAVISLGLIGSGTNNAR 721 (872)
Q Consensus 650 e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~----~~~aid~L----~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~r 721 (872)
+...+.+...+..++|-+|...-..++-....++ ....++.+ -+.++|.+.+||-+|.=++|.|+-=.+...
T Consensus 370 ~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 370 SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 3334444444566888888887777766655544 33444444 344689999999999999998887777666
Q ss_pred HHHHHHHhhh
Q 002870 722 IAGMLRNLSS 731 (872)
Q Consensus 722 v~~~lr~l~s 731 (872)
+.++|..+.+
T Consensus 450 ~~k~L~~~~~ 459 (815)
T KOG1820|consen 450 FKKLLKDLDK 459 (815)
T ss_pred HHHHHHhhcc
Confidence 6777776653
No 148
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=26.84 E-value=7.2e+02 Score=25.62 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=15.3
Q ss_pred HHHHHHhHhcCCCCHHHHHHHHHHHhh
Q 002870 522 SAISLGLIYVGSCNEEVAQAIIFALMD 548 (872)
Q Consensus 522 AaLALGLi~lGs~n~~~~e~ll~~L~~ 548 (872)
+-+.+|.++...++.+.+...++.+.+
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456666666666665555555554443
No 149
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=26.84 E-value=82 Score=30.91 Aligned_cols=50 Identities=24% Similarity=0.223 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHh
Q 002870 36 DLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYE 103 (872)
Q Consensus 36 ~l~eed~~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye 103 (872)
.=|+|||+||-+...-| ++.|...+..+++--.+ .+.++.|++.|++.-+
T Consensus 13 SDS~~DQ~lKl~VRD~V--------------l~~l~~~~~~~~~~~ea----~~~i~~~~~~Ie~~A~ 62 (130)
T PF09551_consen 13 SDSPEDQALKLKVRDAV--------------LEYLSPWLSQAKSKEEA----REVIRENLPEIEQIAE 62 (130)
T ss_pred CCCHHHHHHHHHHHHHH--------------HHHHHHHhccCCCHHHH----HHHHHHhHHHHHHHHH
Confidence 34899999998865432 34444444444332222 5667777888877744
No 150
>PHA03033 hypothetical protein; Provisional
Probab=26.44 E-value=30 Score=33.40 Aligned_cols=52 Identities=25% Similarity=0.370 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhh--ccccccC---------CCccchhhhhHHHHHHHH
Q 002870 45 KQQLELYVERVQDPDPGLQKVALESMRTEIRTS--TSSMTSV---------PKPLKFLRPHYGTLKAYY 102 (872)
Q Consensus 45 k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~--tss~tsv---------pkplk~l~~~~~~l~~~y 102 (872)
|+=+|..|.-+ . ...||..++.++.+- +.+||+. .|.+|++|+|++..+.+|
T Consensus 77 Kdyie~~v~~~-----n-i~r~l~n~~~~~~~~~i~~~m~~~~~i~~~y~~~~~~~y~~~~~~~~~nly 139 (142)
T PHA03033 77 ADYIEDIVDDI-----N-ILRALDNFKEIIEKDKIADIMSHMKFIEDNYETDKLLKYIRDHIPEEKNLY 139 (142)
T ss_pred HHHHHHHHHHH-----H-HHHHHHHHHHHHHhhhHHHHHHHHHhhccccccchHHHHHHHhCcccccee
Confidence 44455555543 1 257888888888754 5577762 244555555555555444
No 151
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.40 E-value=3.7e+02 Score=35.34 Aligned_cols=114 Identities=16% Similarity=0.121 Sum_probs=66.9
Q ss_pred hhhhhhhhhHHHHHHhhhcCCC--HHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCCh
Q 002870 588 NEKIRKYCDMTLLSCAYAGTGN--VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQ 665 (872)
Q Consensus 588 ~~~i~r~~~~~~~~lAyaGTGn--~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~ 665 (872)
.+|-.+.+++++++=-.+=+.+ ....+-|........++ -+|..+|+|+|=.+++-|.--|.-...+=.-+++.++
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p--~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~ 1012 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSP--RIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESP 1012 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCc--eeeecchheccchhhhcccccchhhHHHHHHhcCccH
Confidence 3455566555554432222222 23344555655544444 8999999999988888763222223333333578889
Q ss_pred hHHhHHHHHHhhhccCCCchHHHHHHHHh---hcCCchHHHH
Q 002870 666 NIRRAVPLALGLLCISNPKVNVMDTLSRL---SHDTDSEVAM 704 (872)
Q Consensus 666 ~VR~ga~lALGL~~agt~~~~aid~L~~l---~~D~d~~Vr~ 704 (872)
.||..+-+.|.-+ ..++..++-..|..+ ..|++..++-
T Consensus 1013 ~vRkta~lvlshL-ILndmiKVKGql~eMA~cl~D~~~~Isd 1053 (1251)
T KOG0414|consen 1013 SVRKTALLVLSHL-ILNDMIKVKGQLSEMALCLEDPNAEISD 1053 (1251)
T ss_pred HHHHHHHHHHHHH-HHhhhhHhcccHHHHHHHhcCCcHHHHH
Confidence 9999999988866 334455554445444 4677766554
No 152
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.34 E-value=2e+03 Score=30.69 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=52.8
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhHHHHHHhh--hcCC-C----HHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhc
Q 002870 575 ESVEATAEVSKTFNEKIRKYCDMTLLSCAY--AGTG-N----VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMA 644 (872)
Q Consensus 575 e~a~~ll~~L~~~~~~i~r~~~~~~~~lAy--aGTG-n----~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~ 644 (872)
+.++..++.+..-.||+.|.|-.+++||-. .|++ + ...++.|+....+...+ .|++.+..+++++.-.
T Consensus 915 ~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p--~VqtwSL~al~~i~~s 989 (2067)
T KOG1822|consen 915 SLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSP--VVQTWSLHALALILDS 989 (2067)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCc--hhhhhHHHHHHHHHcC
Confidence 467889999999999999999999999975 4443 2 34677788776554443 8999999999998644
No 153
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=25.93 E-value=4.6e+02 Score=30.61 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=21.7
Q ss_pred HHHHHHHHhccCccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Q 002870 159 EIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLME 203 (872)
Q Consensus 159 ei~~~y~~~~~~~~~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE 203 (872)
++++-+.+.++.++++. --+...++..|+|.+||.++=+
T Consensus 187 ~ai~lle~L~~~~pev~------~~LA~v~l~~~~E~~AI~ll~~ 225 (395)
T PF09295_consen 187 EAIELLEKLRERDPEVA------VLLARVYLLMNEEVEAIRLLNE 225 (395)
T ss_pred HHHHHHHHHHhcCCcHH------HHHHHHHHhcCcHHHHHHHHHH
Confidence 44455555554444321 1244445567899999888644
No 154
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=25.66 E-value=1.2e+02 Score=22.82 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHH
Q 002870 48 LELYVERVQDPDPGLQKVALESMRTEI 74 (872)
Q Consensus 48 l~~~v~~l~e~d~~l~~~aL~~L~~~i 74 (872)
+..||.+|+.+|+++++.|+-.|..+-
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 678999999999999999999988764
No 155
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.59 E-value=1.5e+03 Score=28.87 Aligned_cols=73 Identities=11% Similarity=0.178 Sum_probs=50.8
Q ss_pred HhhhccCCCchhHHHHHHHHHHhhcCCCCCh---hhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC--HHHHHHHHH
Q 002870 433 IDKYFHSTDNHVIAGALLGVGIVNCGIRNDC---DPALALLSEYVGREDACIRIGAIMGLGISYAGTQN--DQIRHKLST 507 (872)
Q Consensus 433 l~~yL~s~~~~~k~GAllaLGli~~G~~~e~---d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~--~~i~e~L~~ 507 (872)
+.+-|.++++|+||..+=-|--. +|. +|.+......|+..++++|.-|+++++-+|-...+ +|.-+++-.
T Consensus 104 ~RkDLQHPNEyiRG~TLRFLckL-----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~ 178 (948)
T KOG1058|consen 104 YRKDLQHPNEYIRGSTLRFLCKL-----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIES 178 (948)
T ss_pred HhhhccCchHhhcchhhhhhhhc-----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHH
Confidence 44557788999997665444322 332 35666677778889999999999999999987543 455666666
Q ss_pred Hhc
Q 002870 508 ILN 510 (872)
Q Consensus 508 ~L~ 510 (872)
.|.
T Consensus 179 fL~ 181 (948)
T KOG1058|consen 179 FLL 181 (948)
T ss_pred HHH
Confidence 553
No 156
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=25.49 E-value=1.2e+03 Score=27.84 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=38.0
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-hH------HHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 002870 653 IRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VN------VMDTLSRLSHDTDSEVAMAAVISLGLIGS 715 (872)
Q Consensus 653 ~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-~~------aid~L~~l~~D~d~~Vr~~AiiAlGlV~a 715 (872)
...+..++...+..+|+-+.-.+.-++..++. .+ +++.|.+...+.|..|+.+|+--++-+..
T Consensus 162 ~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 162 LSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 45566666665677777655444444332221 11 44555555677777899888877777766
No 157
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=25.34 E-value=1.9e+02 Score=29.40 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=44.2
Q ss_pred cchhhhHhHhhhhhhc-chhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhc
Q 002870 629 AYQGPAVLGIAMVAMA-EELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSH 696 (872)
Q Consensus 629 ~vrr~Avl~iglI~~~-~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~ 696 (872)
-+||++.+.+.--... .. -+...++++.+.++.+..|+.|++.+|.-.+.-.++ .+++.+.+...
T Consensus 120 ~~rR~~~~~~~~~~~~~~~--~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~-~v~~~l~~~~~ 185 (197)
T cd06561 120 WVRRAAIVLLLRLIKKETD--FDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPE-RVIAFLEKNGL 185 (197)
T ss_pred HHHHHHHHHHHHHHHhccc--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHH-HHHHHHHHHHH
Confidence 5666666655443333 12 277888888888888899999999999988766333 45666665533
No 158
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=25.33 E-value=1.7e+02 Score=35.62 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHH
Q 002870 610 VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMD 689 (872)
Q Consensus 610 ~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid 689 (872)
..+|..++..|.++.. .||..|+=+|-.++-.++.-...+.+++.+|++..++..+-.|--||--+.--.|....-.
T Consensus 58 ~~Ai~a~~DLcEDed~---~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~ 134 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDV---QIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTG 134 (556)
T ss_dssp HHHHHHHHHHHT-SSH---HHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhcccH---HHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 5677888888864322 6888888888888877762224455566677888888777777777755544344333333
Q ss_pred HHHHhh--cCCchHHHHHHH
Q 002870 690 TLSRLS--HDTDSEVAMAAV 707 (872)
Q Consensus 690 ~L~~l~--~D~d~~Vr~~Ai 707 (872)
+++... ...|+.||.-++
T Consensus 135 lf~~i~~~~~~de~~Re~~l 154 (556)
T PF05918_consen 135 LFSQIESSKSGDEQVRERAL 154 (556)
T ss_dssp HHHHHH---HS-HHHHHHHH
T ss_pred HHHHHHhcccCchHHHHHHH
Confidence 444443 123455665544
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=24.82 E-value=2.8e+02 Score=24.70 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhhcCChhH-HhHHHHHHhhhccCCCc-hHHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCCc-hHHHHH
Q 002870 650 EMAIRSLEHLLQYGEQNI-RRAVPLALGLLCISNPK-VNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTNN-ARIAGM 725 (872)
Q Consensus 650 e~~~~il~~L~~~~~~~V-R~ga~lALGL~~agt~~-~~aid~L~~l~~-D~d~~Vr~~AiiAlGlV~aGt~n-~rv~~~ 725 (872)
+.+...+..+.+....+. ..-+.+-+|.++...++ ..+++.+..+.. +|+......+...+|.+..+.++ ....+.
T Consensus 19 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 98 (119)
T TIGR02795 19 ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKAT 98 (119)
T ss_pred HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHH
Confidence 555555555544321111 12234556666666666 447777776643 45433223445666666665554 344455
Q ss_pred HHHhhhh
Q 002870 726 LRNLSSY 732 (872)
Q Consensus 726 lr~l~s~ 732 (872)
++++...
T Consensus 99 ~~~~~~~ 105 (119)
T TIGR02795 99 LQQVIKR 105 (119)
T ss_pred HHHHHHH
Confidence 5554443
No 160
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.42 E-value=1.5e+03 Score=28.67 Aligned_cols=87 Identities=24% Similarity=0.205 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH---HHH----HHHHHHhcCCCCc
Q 002870 443 HVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND---QIR----HKLSTILNDAKSP 515 (872)
Q Consensus 443 ~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~---~i~----e~L~~~L~d~~~~ 515 (872)
..-+|.+|.+=.-.+|- +-..+++.+..+++.+++---|-.|++++|.+--|-... .+. ..+...+.|++
T Consensus 343 ~kAAg~CL~l~A~~~~D-~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s-- 419 (859)
T KOG1241|consen 343 AKAAGVCLMLFAQCVGD-DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS-- 419 (859)
T ss_pred HHHHHHHHHHHHHHhcc-cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch--
Confidence 45567777766655542 113468888888999998888889999999998886532 122 22333334664
Q ss_pred hHHHHHHHHHHHhHhcC
Q 002870 516 LDVIAFSAISLGLIYVG 532 (872)
Q Consensus 516 ~e~~~~AaLALGLi~lG 532 (872)
.-+...++..+|.|.=+
T Consensus 420 l~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 420 LWVKDTAAWTLGRIADF 436 (859)
T ss_pred hhhcchHHHHHHHHHhh
Confidence 33445789999998543
No 161
>PF12272 DUF3610: Protein of unknown function (DUF3610); InterPro: IPR022058 This domain family is found in eukaryotes, and is typically between 146 and 160 amino acids in length. There are two conserved sequence motifs: FNN and IDS.
Probab=24.09 E-value=55 Score=32.94 Aligned_cols=45 Identities=27% Similarity=0.460 Sum_probs=38.7
Q ss_pred eeeecccccccccCCccceeeceeeeecceeecccceeeeccccccc
Q 002870 824 PVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKSDI 870 (872)
Q Consensus 824 ~vrvgqavd~vg~ag~pk~itg~qt~~tpvll~~~erael~~~~y~~ 870 (872)
.+.-|++||. +.-|.|-++|||- .+.=-.+-|.-||-+|+++|.+
T Consensus 16 ~Ls~~~~v~~-~~~~~PMam~gFN-NsLGTFVE~~Gqasia~~dwti 60 (157)
T PF12272_consen 16 ALSHGTPVDR-EEDGNPMAMRGFN-NSLGTFVEYSGQASIASEDWTI 60 (157)
T ss_pred HhcCCCCCCc-cccCCceeeeecc-CccceeEeecceEEEeeCceEE
Confidence 3556788887 7889999999996 5888899999999999999876
No 162
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=24.03 E-value=73 Score=31.63 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=27.4
Q ss_pred HHHccCCHHHHHHHHHhCCChHHHHHHHHhc
Q 002870 248 IYLKFEEFPNALQIALFLDNMQYVKQIFTSC 278 (872)
Q Consensus 248 iy~k~~~~~~al~~al~l~d~~~i~~i~~~~ 278 (872)
-|.+.++|.+|+..|++|+.|-.+-++|+.+
T Consensus 6 N~l~~~~y~~Al~LAl~L~~P~~ll~i~~~~ 36 (141)
T PF08625_consen 6 NLLRQKDYKEALRLALKLDHPFRLLKILKDL 36 (141)
T ss_pred HHHHhhhHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3567889999999999999999999999874
No 163
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=23.76 E-value=96 Score=31.73 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhc
Q 002870 35 EDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYET 104 (872)
Q Consensus 35 ~~l~eed~~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~ 104 (872)
+.=|+|||+||-.... .=|+.|...+..+.|. ...-+.++.|.+.|++.-++
T Consensus 47 NSDs~~DQ~lKl~VRD--------------~Vl~~~~~~~~~~~s~----~ea~~~i~~~l~~Ie~~a~~ 98 (168)
T TIGR02837 47 NSDSDEDQALKLKVRD--------------AVLKEIRPWLSGLKSL----EEARRVIRENLPEIERIAES 98 (168)
T ss_pred CCCCHHHHHHHHHHHH--------------HHHHHHHHHhccCCCH----HHHHHHHHHhhHHHHHHHHH
Confidence 4559999999988754 3345555555554332 22366778888888777653
No 164
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=23.44 E-value=9.2e+02 Score=25.76 Aligned_cols=130 Identities=12% Similarity=0.031 Sum_probs=68.7
Q ss_pred cCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhh-hhh-hhhhhhhHHHHHHhhhcCC
Q 002870 531 VGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKT-FNE-KIRKYCDMTLLSCAYAGTG 608 (872)
Q Consensus 531 lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~-~~~-~i~r~~~~~~~~lAyaGTG 608 (872)
...++-+-+..++..+...... .....-+...|.-..-.|..+++...++.... .++ +-.+. .++..++.+|
T Consensus 121 ~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~----~l~~~li~~~ 194 (280)
T PF13429_consen 121 YRLGDYDEAEELLEKLEELPAA--PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN----ALAWLLIDMG 194 (280)
T ss_dssp HHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH----HHHHHHCTTC
T ss_pred HHHhHHHHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH----HHHHHHHHCC
Confidence 3445555556666655432211 12222333445555556777777666665433 332 22222 3455667888
Q ss_pred CHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhc--CChhHHhHH
Q 002870 609 NVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY--GEQNIRRAV 671 (872)
Q Consensus 609 n~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~--~~~~VR~ga 671 (872)
+....++++........+ +-.-...+|.+....|++ +.+...+...... .||.+...-
T Consensus 195 ~~~~~~~~l~~~~~~~~~--~~~~~~~la~~~~~lg~~---~~Al~~~~~~~~~~p~d~~~~~~~ 254 (280)
T PF13429_consen 195 DYDEAREALKRLLKAAPD--DPDLWDALAAAYLQLGRY---EEALEYLEKALKLNPDDPLWLLAY 254 (280)
T ss_dssp HHHHHHHHHHHHHHH-HT--SCCHCHHHHHHHHHHT-H---HHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred ChHHHHHHHHHHHHHCcC--HHHHHHHHHHHhcccccc---cccccccccccccccccccccccc
Confidence 887666666665544322 223345678888888888 8888888877653 355555433
No 165
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=23.43 E-value=1e+03 Score=26.19 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhcc-ccccCCC--ccchhhhhHHHHHHHHhcCCCcchHHHHHHHHHHH
Q 002870 45 KQQLELYVERVQDPDPGLQKVALESMRTEIRTSTS-SMTSVPK--PLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVL 121 (872)
Q Consensus 45 k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~ts-s~tsvpk--plk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l 121 (872)
++.+..+..-++.+++.++..||+.+.+++..+-. ..++-+. +-..-.+-...+....++. .++.+..++.-+++|
T Consensus 63 ~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 63 KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKL 141 (298)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 56677888888888999999999999999998732 2222221 0111223333444444444 445688888889999
Q ss_pred hhhccCcccc-cchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHhc
Q 002870 122 ALTMSAEGER-ESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMK 190 (872)
Q Consensus 122 ~~t~~~~~~~-~~L~y~L~~~~~d~~~wgheYvr~L~~ei~~~y~~~~~~~~~~~~L~~lv~~iv~~~l~ 190 (872)
.. +.-=.. ..+--+|.=-.|++..-..+++|+..+-+...|.....+. -..+.+..-..+....+
T Consensus 142 lL--~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~--Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 142 LL--SGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN--QERLAEAFLPTLRTLSN 207 (298)
T ss_pred Hh--cCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHHHh
Confidence 73 322122 3444466656788887777899999999999997532211 13444444444444443
No 166
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.26 E-value=2.3e+02 Score=36.69 Aligned_cols=102 Identities=23% Similarity=0.233 Sum_probs=64.1
Q ss_pred HHHhhcccCCCC--ccchhhhHhHhhhhhhcchhh-----HhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCC-----
Q 002870 616 LLGHCAQHHEKG--EAYQGPAVLGIAMVAMAEELG-----LEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP----- 683 (872)
Q Consensus 616 LL~~~~~~~~d~--~~vrr~Avl~iglI~~~~~~g-----~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~----- 683 (872)
|+.+|-++.+++ +-.|..++|+||.+--.-+.. ..++.+.+-.++.+.-|.||.++.||||-.- |++
T Consensus 600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl-~~~~d~fd 678 (1387)
T KOG1517|consen 600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFL-SNGSDNFD 678 (1387)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHh-cccccccc
Confidence 566676666652 356888999999875443321 1456666666667677999999999999653 322
Q ss_pred -chHH-------------HH--------HHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 002870 684 -KVNV-------------MD--------TLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 684 -~~~a-------------id--------~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~ 718 (872)
+..+ ++ .|..+.+|....||.--++++.=.+.|--
T Consensus 679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 1111 11 23344577788888777777776666644
No 167
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=22.86 E-value=1.1e+02 Score=30.42 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=36.9
Q ss_pred HHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCc
Q 002870 50 LYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDS 108 (872)
Q Consensus 50 ~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~ 108 (872)
.+...|..+|+++++.||+-|.+ |- -+.|.||-+.|+.+-++.+|.
T Consensus 21 ~~~~LL~~~d~~vQklAL~cll~-----~k--------~~~l~pY~d~L~~Lldd~~fr 66 (141)
T PF07539_consen 21 ALLRLLSSRDPEVQKLALDCLLT-----WK--------DPYLTPYKDNLENLLDDKTFR 66 (141)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH-----hC--------cHHHHhHHHHHHHHcCcchHH
Confidence 45678889999999999999876 21 136899999999999987653
No 168
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=22.62 E-value=9.5e+02 Score=26.22 Aligned_cols=88 Identities=13% Similarity=0.211 Sum_probs=59.0
Q ss_pred cCChhhHHHHHHHHhhhhhhhhhhh-----hHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcc
Q 002870 571 LGKQESVEATAEVSKTFNEKIRKYC-----DMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAE 645 (872)
Q Consensus 571 ~G~~e~a~~ll~~L~~~~~~i~r~~-----~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~ 645 (872)
++.....+.+++.+...++++-.+. ..+.-.+|-.|-|+...+.+++.- ++..+ .+|.+|.=+++.+....
T Consensus 69 ~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~--~~~~~--yvR~aa~~aL~~l~~~~ 144 (249)
T PF06685_consen 69 FREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDGDIEPLKELIED--PDADE--YVRMAAISALAFLVHEG 144 (249)
T ss_pred HhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhC--CcHHH--HHHHHHHHHHHHHHHcC
Confidence 3344455677777765555433222 233445666778888877777432 33333 88999999999999888
Q ss_pred hhhHhHHHHHHHHHhhc
Q 002870 646 ELGLEMAIRSLEHLLQY 662 (872)
Q Consensus 646 ~~g~e~~~~il~~L~~~ 662 (872)
++..+.+.+.|..++++
T Consensus 145 ~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 145 PISREEVIQYFRELLNY 161 (249)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 88788888888888765
No 169
>PF13934 ELYS: Nuclear pore complex assembly
Probab=22.41 E-value=3.2e+02 Score=29.11 Aligned_cols=89 Identities=18% Similarity=0.281 Sum_probs=57.1
Q ss_pred HHHhcCCCHHHHHHHHHhcCCh----hhhHHH-hhccchHHHHHHHHhhcccCCCCChHHHHHHHHHHHHccCCHHHHHH
Q 002870 186 AFHMKHNAEPEAVDLLMEVEDL----DLLVEH-VDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQ 260 (872)
Q Consensus 186 ~~~l~~n~e~eAvdlalE~~~l----d~i~~~-vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~k~~~~~~al~ 260 (872)
..+|.|+++.+||+++.+..-. ++|.+. +.+..+.-.+.|+....+-+.++++ +.....+ +..+..++|+.
T Consensus 86 ~W~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~---~~~~~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 86 FWLLDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEA---LTLYFVA-LANGLVTEAFS 161 (226)
T ss_pred HHHhChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHH---HHHHHHH-HHcCCHHHHHH
Confidence 4678999999999999987432 333333 3446677777888877666555533 3333333 45678888888
Q ss_pred HHHhCCChH---HHHHHHHhc
Q 002870 261 IALFLDNMQ---YVKQIFTSC 278 (872)
Q Consensus 261 ~al~l~d~~---~i~~i~~~~ 278 (872)
+.=...+.. ..+.+++.|
T Consensus 162 ~~R~~~~~~~~~l~e~l~~~~ 182 (226)
T PF13934_consen 162 FQRSYPDELRRRLFEQLLEHC 182 (226)
T ss_pred HHHhCchhhhHHHHHHHHHHH
Confidence 775555543 555555554
No 170
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=21.22 E-value=1.5e+03 Score=27.43 Aligned_cols=182 Identities=13% Similarity=-0.034 Sum_probs=92.9
Q ss_pred ccchhhHHhHhhhccCC-CchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC-HHH
Q 002870 424 WDVDSGLAQIDKYFHST-DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQI 501 (872)
Q Consensus 424 ~~~~~~l~~l~~yL~s~-~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~-~~i 501 (872)
++.++++..+.+.+... .....+-+...+|.++.... +-+.++..+...+...... ..+.+.+|.++...++ ++.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g-~~~eA~~~~~kal~l~P~~--~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG-KHLEALADLSKSIELDPRV--TQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHCCCHHHH
Confidence 35666777777666432 22344455666677664332 2344777777666532211 2355666777666554 345
Q ss_pred HHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHH
Q 002870 502 RHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEAT 580 (872)
Q Consensus 502 ~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~l 580 (872)
.+.+...+. ++. ..+ +-+.+|.++.-.++-+-+...++..++..+. .......+|..+...|+-+++...
T Consensus 385 ~~~~~~al~~~p~-~~~----~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~----~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 385 EEDFDKALKLNSE-DPD----IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD----FIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred HHHHHHHHHhCCC-CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc----CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 555555553 332 222 4556777777777665444444443332221 122233455555566666666666
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHh
Q 002870 581 AEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGH 619 (872)
Q Consensus 581 l~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~ 619 (872)
++...... |-. .......|.+|...|+.....+.+.-
T Consensus 456 ~~~al~~~-P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 456 FRRCKKNF-PEA-PDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHhC-CCC-hHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 65543321 111 11233456777778876544444433
No 171
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=20.55 E-value=1e+02 Score=27.53 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCChhhH
Q 002870 36 DLSEEDLALKQQLELYVERVQDPDPGLQ 63 (872)
Q Consensus 36 ~l~eed~~~k~~l~~~v~~l~e~d~~l~ 63 (872)
.|||+|++.=+|+| ..|.++||.+.
T Consensus 2 ~LSe~E~r~L~eiE---r~L~~~DP~fa 26 (82)
T PF11239_consen 2 PLSEHEQRRLEEIE---RQLRADDPRFA 26 (82)
T ss_pred CCCHHHHHHHHHHH---HHHHhcCcHHH
Confidence 48999987666666 67788898874
No 172
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=20.53 E-value=1.4e+02 Score=22.51 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=18.8
Q ss_pred HHHHHHhhcCChhHHhHHHHHHhhhc
Q 002870 654 RSLEHLLQYGEQNIRRAVPLALGLLC 679 (872)
Q Consensus 654 ~il~~L~~~~~~~VR~ga~lALGL~~ 679 (872)
..+-.|+++.++.||..++.||+=++
T Consensus 15 ~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 15 PPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 34445556888899998888887554
No 173
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=20.41 E-value=5.5e+02 Score=29.21 Aligned_cols=136 Identities=21% Similarity=0.212 Sum_probs=62.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHHhhcccCCC---------CccchhhhHhHhhhhhhcchhhHhHHHHHHHHHh--------
Q 002870 598 TLLSCAYAGTGNVLKVQNLLGHCAQHHEK---------GEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLL-------- 660 (872)
Q Consensus 598 ~~~~lAyaGTGn~~~i~~LL~~~~~~~~d---------~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~-------- 660 (872)
..+|+-.+|.-|..+-+.+++-...+... +...=+.|..-+||=+..++.+.-.-.+++.+|-
T Consensus 53 VllaLrL~~~~~~~~e~~ll~~Lk~~~~~~~~~s~~~~~~t~GqLALyiLAL~asC~dp~~~~~~~Lvs~Lk~~le~e~~ 132 (326)
T PF01122_consen 53 VLLALRLSGIHNLEKEQLLLQQLKEDYQQRLLSSLSSSDPTSGQLALYILALRASCRDPRFFKGHNLVSQLKRKLEEEKE 132 (326)
T ss_dssp HHHHHHTSSEE-CHHHHHHHHHHHHHHHHHHSTSSSGTC--HHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeecCcccHHHHHHHHHHHHHHHHHHHhhccccCCCCccHHHHHHHHHhhhccCCcccccccHHHHHHHHHHhhhh
Confidence 34556666666666655555554322110 0123356777788844433322222334444442
Q ss_pred ----hcCChhHH-hHHHHHHhhhccCCCc---hHHHHHHHHhhcC----CchHHHHHHHHHHHHHcCCC--Cc-----hH
Q 002870 661 ----QYGEQNIR-RAVPLALGLLCISNPK---VNVMDTLSRLSHD----TDSEVAMAAVISLGLIGSGT--NN-----AR 721 (872)
Q Consensus 661 ----~~~~~~VR-~ga~lALGL~~agt~~---~~aid~L~~l~~D----~d~~Vr~~AiiAlGlV~aGt--~n-----~r 721 (872)
|.++|.-- |.-.+++=-+|..++. ..+.+++....++ ....|-.+|+..|++.-+.. .+ .+
T Consensus 133 ~i~~h~g~P~TnyYq~sL~vLALCv~~~~~~~~~v~kL~~~~~~~~~~~~~~sVDT~AmA~LALtCv~~~~~~~~~~~~~ 212 (326)
T PF01122_consen 133 NIGNHKGHPLTNYYQYSLGVLALCVHNKRVSLSVVAKLLKAENHNFYHGSQFSVDTGAMAVLALTCVKNSNPNGPELRRR 212 (326)
T ss_dssp HHTSSSTS-SSGHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSSTSS-STCHHHHHHHHHHHHHHHHTTTSTTGGGHHH
T ss_pred hcccCCCCCCCcccchHHHHHHHHccCCCcCHHHHHHHHHHHHhhcccCCCCCccHHHHHHHHHHHHhccCcCcHhHHHH
Confidence 22223322 3333333233444433 2344455565665 33446666666666555443 34 46
Q ss_pred HHHHHHHhhhhh
Q 002870 722 IAGMLRNLSSYY 733 (872)
Q Consensus 722 v~~~lr~l~s~~ 733 (872)
+...++.+....
T Consensus 213 i~~~i~~~~~kI 224 (326)
T PF01122_consen 213 IQQAIRSLVEKI 224 (326)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 174
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=20.31 E-value=1.3e+03 Score=26.38 Aligned_cols=286 Identities=13% Similarity=0.032 Sum_probs=132.1
Q ss_pred HHHHHHHhhhhc--cccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCC-CCHHHHHHHHH
Q 002870 411 KMSAAASLGMIL--LWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIM 487 (872)
Q Consensus 411 k~~A~aslGlI~--~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~~~v~~gA~l 487 (872)
|......-|++. .||.+.+.+.+.+-....+.+...-.+.|--....| +.+.+..+|...... ++..+....
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g---~~~~A~~~l~~a~~~~p~~~l~~~~-- 157 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRG---DEARANQHLEEAAELAGNDNILVEI-- 157 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCcCchHHHH--
Confidence 334444445544 578888888777665444333333333333222223 233466666665432 222111111
Q ss_pred HHHHHhccCCCH-HHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHH--H
Q 002870 488 GLGISYAGTQND-QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLI--P 563 (872)
Q Consensus 488 GLGLay~Gt~~~-~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~--~ 563 (872)
..+-++...++. +..+.+...+. .+. +. .+...+|.+++..++-+.+..++..+...... ...-...+ .
T Consensus 158 ~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~----~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~--~~~~~~~l~~~ 230 (409)
T TIGR00540 158 ARTRILLAQNELHAARHGVDKLLEMAPR-HK----EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF--DDEEFADLEQK 230 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence 113333444443 34444444443 221 22 25667888888888888777888777643111 11111111 1
Q ss_pred HHHHhhhcCCh-hhHHHHHHHHhhhhhhhh-hhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchh--hhHhHhh
Q 002870 564 LGLGLLYLGKQ-ESVEATAEVSKTFNEKIR-KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQG--PAVLGIA 639 (872)
Q Consensus 564 lglgLl~~G~~-e~a~~ll~~L~~~~~~i~-r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr--~Avl~ig 639 (872)
...+++--+.. +..+.+.+.....+.... .....++.+-.+...|+.....+++.-......| +... ..+..++
T Consensus 231 a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd--~~~~~~~~l~~~~ 308 (409)
T TIGR00540 231 AEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD--DRAISLPLCLPIP 308 (409)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC--cccchhHHHHHhh
Confidence 12233322211 122334333433332111 2233445666777778766555555444332221 1111 1233333
Q ss_pred hhhhcchhhHhHHHHHHHHHhhc--CChhHHhHHHHHHhhhccCCCchH-HHHHHHH---hhcCCchHHHHHHHHHHHHH
Q 002870 640 MVAMAEELGLEMAIRSLEHLLQY--GEQNIRRAVPLALGLLCISNPKVN-VMDTLSR---LSHDTDSEVAMAAVISLGLI 713 (872)
Q Consensus 640 lI~~~~~~g~e~~~~il~~L~~~--~~~~VR~ga~lALGL~~agt~~~~-aid~L~~---l~~D~d~~Vr~~AiiAlGlV 713 (872)
.+--+++ +...+.++..... .||+ ...-.++|-++...++.. +.+.|++ +..+|++... ..+|.+
T Consensus 309 ~l~~~~~---~~~~~~~e~~lk~~p~~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~----~~La~l 379 (409)
T TIGR00540 309 RLKPEDN---EKLEKLIEKQAKNVDDKPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL----AMAADA 379 (409)
T ss_pred hcCCCCh---HHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH----HHHHHH
Confidence 3322333 4455555544433 3342 234457777776666654 5666763 2345655431 256666
Q ss_pred cCCCCc
Q 002870 714 GSGTNN 719 (872)
Q Consensus 714 ~aGt~n 719 (872)
....++
T Consensus 380 l~~~g~ 385 (409)
T TIGR00540 380 FDQAGD 385 (409)
T ss_pred HHHcCC
Confidence 665554
No 175
>PF13461 C-term_anchor: Cell-wall surface anchor repeat; PDB: 2KVZ_A.
Probab=20.07 E-value=84 Score=25.97 Aligned_cols=34 Identities=38% Similarity=0.579 Sum_probs=14.0
Q ss_pred ecCCCCccceeee----ecccccccccCCccceeeceeeeecc
Q 002870 814 VDENLKPLSVPVR----VGQAVDVVGQAGRPKTITGFQTHSTP 852 (872)
Q Consensus 814 ld~~l~~~~v~vr----vgqavd~vg~ag~pk~itg~qt~~tp 852 (872)
+|++++.+.-+.. +|++.++ +||+|.||.-..+|
T Consensus 2 ~D~~G~~i~~~~~~~G~~G~~Y~~-----~~~~I~gY~l~~~~ 39 (57)
T PF13461_consen 2 VDENGNEIAPPKTLTGKVGESYTT-----EAKTIPGYTLVSIP 39 (57)
T ss_dssp E-SSS-EEEEEEEE---TT--------------GGGEEEEEE-
T ss_pred CCCCcCCcCCCeEecCCCCCccEe-----CCceeCCEEEeecC
Confidence 5788877743332 3444444 68999999765553
Done!