Query 002870
Match_columns 872
No_of_seqs 294 out of 810
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 04:48:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ady_A RPN2, 26S proteasome re 100.0 4E-155 1E-159 1401.2 55.5 732 49-838 18-797 (963)
2 4ady_A RPN2, 26S proteasome re 100.0 2.6E-51 8.8E-56 496.5 35.4 519 174-784 68-678 (963)
3 1oyz_A Hypothetical protein YI 98.9 1.8E-07 6E-12 99.0 22.2 122 588-730 140-261 (280)
4 1oyz_A Hypothetical protein YI 98.9 1.7E-07 5.7E-12 99.1 21.8 250 429-711 24-278 (280)
5 3ltm_A Alpha-REP4; protein eng 98.7 2.3E-07 8E-12 93.8 16.4 96 609-717 110-205 (211)
6 3ltj_A Alpharep-4; protein eng 98.7 5.4E-07 1.9E-11 90.3 16.7 182 466-713 15-196 (201)
7 1b3u_A Protein (protein phosph 98.5 2.4E-06 8.3E-11 98.5 20.0 332 410-750 142-507 (588)
8 1b3u_A Protein (protein phosph 98.5 5.7E-06 1.9E-10 95.5 22.9 332 410-750 64-429 (588)
9 3ltm_A Alpha-REP4; protein eng 98.5 2.8E-06 9.5E-11 85.8 16.5 187 534-751 16-202 (211)
10 3ltj_A Alpharep-4; protein eng 98.5 5.9E-06 2E-10 82.7 18.8 185 534-749 11-195 (201)
11 2jdq_A Importin alpha-1 subuni 98.4 7.7E-05 2.6E-09 83.1 28.2 274 433-718 25-350 (450)
12 2jdq_A Importin alpha-1 subuni 98.3 7.7E-05 2.6E-09 83.1 24.2 295 409-715 35-390 (450)
13 4b8j_A Importin subunit alpha- 98.3 0.00012 4.1E-09 84.3 25.5 274 409-718 89-403 (528)
14 2vgl_B AP-2 complex subunit be 98.3 0.00013 4.5E-09 86.0 26.0 299 408-718 100-422 (591)
15 2vgl_B AP-2 complex subunit be 98.2 0.00014 4.8E-09 85.7 25.7 268 430-717 88-384 (591)
16 1wa5_B Importin alpha subunit; 98.2 6.1E-05 2.1E-09 86.9 21.0 275 430-717 89-414 (530)
17 1w63_A Adapter-related protein 98.2 7.6E-05 2.6E-09 88.6 22.2 275 430-716 109-415 (618)
18 1wa5_B Importin alpha subunit; 98.2 0.00012 4.1E-09 84.5 23.3 293 409-714 102-456 (530)
19 4fdd_A Transportin-1; heat rep 98.1 0.033 1.1E-06 67.9 43.7 301 408-715 334-699 (852)
20 4b8j_A Importin subunit alpha- 98.0 0.0003 1E-08 80.9 22.6 288 428-753 74-401 (528)
21 4hxt_A De novo protein OR329; 98.0 0.00067 2.3E-08 69.0 22.0 213 467-718 4-244 (252)
22 3ul1_B Importin subunit alpha- 98.0 0.0012 4E-08 76.4 26.1 276 433-719 62-391 (510)
23 1w63_A Adapter-related protein 97.9 0.00038 1.3E-08 82.6 20.2 309 425-752 67-414 (618)
24 3tpo_A Importin subunit alpha- 97.9 0.0025 8.6E-08 73.8 26.1 244 467-719 121-410 (529)
25 4fdd_A Transportin-1; heat rep 97.9 0.0031 1E-07 77.1 28.1 317 436-762 98-480 (852)
26 1te4_A Conserved protein MTH18 97.7 8.6E-05 3E-09 69.7 8.6 118 611-748 12-129 (131)
27 1qgr_A Protein (importin beta 97.6 0.019 6.4E-07 69.4 29.3 307 436-750 98-477 (876)
28 4db6_A Armadillo repeat protei 97.6 0.001 3.4E-08 66.4 15.0 85 629-713 111-207 (210)
29 1u6g_C TIP120 protein, CAND1; 97.6 0.015 5.2E-07 73.9 29.4 280 429-714 49-402 (1230)
30 1ibr_B P95, importin beta-1 su 97.6 0.018 6.1E-07 63.8 26.4 87 629-715 343-437 (462)
31 2z6g_A B-catenin; FULL-length, 97.6 0.0056 1.9E-07 74.6 23.9 279 429-718 151-475 (780)
32 3ul1_B Importin subunit alpha- 97.5 0.029 1E-06 64.6 28.6 302 406-714 69-429 (510)
33 2z6g_A B-catenin; FULL-length, 97.5 0.01 3.5E-07 72.3 25.6 301 409-718 165-521 (780)
34 1jdh_A Beta-catenin; beta-cate 97.5 0.021 7.3E-07 64.8 25.8 301 409-719 32-389 (529)
35 1jdh_A Beta-catenin; beta-cate 97.5 0.027 9.2E-07 63.9 26.5 296 409-714 116-488 (529)
36 1te4_A Conserved protein MTH18 97.4 0.0001 3.5E-09 69.2 4.7 116 578-712 15-130 (131)
37 4hxt_A De novo protein OR329; 97.4 0.015 5.1E-07 58.9 21.4 216 502-754 4-243 (252)
38 2z6h_A Catenin beta-1, beta-ca 97.4 0.043 1.5E-06 64.9 28.2 329 409-752 113-527 (644)
39 4db8_A Armadillo-repeat protei 97.4 0.0038 1.3E-07 63.9 16.5 51 661-711 190-247 (252)
40 3tpo_A Importin subunit alpha- 97.3 0.023 7.7E-07 65.7 23.3 277 430-713 121-447 (529)
41 2bpt_A Importin beta-1 subunit 97.3 0.052 1.8E-06 65.5 27.3 318 433-751 100-481 (861)
42 4db6_A Armadillo repeat protei 97.3 0.0044 1.5E-07 61.7 14.9 134 612-750 55-207 (210)
43 2z6h_A Catenin beta-1, beta-ca 97.3 0.068 2.3E-06 63.1 27.7 302 409-719 29-386 (644)
44 4db8_A Armadillo-repeat protei 97.2 0.0083 2.8E-07 61.4 16.9 213 430-679 14-250 (252)
45 3now_A UNC-45 protein, SD10334 97.1 0.025 8.4E-07 69.1 22.6 202 502-718 497-740 (810)
46 2bpt_A Importin beta-1 subunit 97.1 0.085 2.9E-06 63.6 26.5 298 411-717 348-713 (861)
47 3now_A UNC-45 protein, SD10334 97.0 0.14 4.8E-06 62.5 27.6 339 402-753 255-695 (810)
48 1u6g_C TIP120 protein, CAND1; 97.0 0.028 9.4E-07 71.5 21.6 248 430-716 8-285 (1230)
49 2vgl_A Adaptor protein complex 96.7 0.18 6.2E-06 59.7 24.1 98 650-750 328-431 (621)
50 2xpi_A Anaphase-promoting comp 96.6 1.3 4.4E-05 50.3 30.4 263 416-700 311-583 (597)
51 1qgr_A Protein (importin beta 96.4 0.49 1.7E-05 57.0 26.4 300 410-715 344-722 (876)
52 2vgl_A Adaptor protein complex 96.2 0.31 1E-05 57.8 22.0 293 410-715 90-433 (621)
53 1xm9_A Plakophilin 1; armadill 96.1 1.1 3.9E-05 50.6 25.7 275 431-718 5-363 (457)
54 3l6x_A Catenin delta-1; cateni 96.1 1.3 4.5E-05 52.1 26.7 118 411-529 25-161 (584)
55 1ibr_B P95, importin beta-1 su 96.1 0.54 1.8E-05 51.8 22.4 240 468-713 5-286 (462)
56 2qk1_A Protein STU2; STU2P, XM 95.9 0.24 8.1E-06 51.7 17.3 75 654-729 150-234 (249)
57 3l6x_A Catenin delta-1; cateni 95.7 1.1 3.9E-05 52.6 24.1 270 446-721 26-390 (584)
58 1xqr_A HSPBP1 protein; armadil 95.7 0.042 1.4E-06 59.2 10.8 136 578-717 84-240 (296)
59 2qk2_A LP04448P; mini spindles 95.4 0.081 2.8E-06 54.3 11.3 102 613-719 100-209 (242)
60 2xpi_A Anaphase-promoting comp 95.4 1.2 4E-05 50.6 22.1 216 522-753 307-530 (597)
61 3l9t_A Putative uncharacterize 95.0 0.93 3.2E-05 47.2 17.6 174 564-750 59-238 (240)
62 1xm9_A Plakophilin 1; armadill 94.6 5 0.00017 45.1 24.3 309 409-719 17-410 (457)
63 1xqr_A HSPBP1 protein; armadil 94.5 0.16 5.6E-06 54.6 11.1 137 614-753 84-239 (296)
64 3hym_B Cell division cycle pro 94.5 2 6.9E-05 43.9 19.2 224 420-662 32-265 (330)
65 3nmw_A APC variant protein; AR 94.2 2.4 8.2E-05 46.5 19.9 89 630-719 234-338 (354)
66 3mkr_A Coatomer subunit epsilo 94.1 3.6 0.00012 43.1 20.4 144 422-587 11-159 (291)
67 2y4t_A DNAJ homolog subfamily 94.0 7.9 0.00027 41.8 27.1 308 415-742 31-368 (450)
68 1lrv_A LRV, leucine-rich repea 93.9 0.0033 1.1E-07 66.1 -3.7 189 433-712 55-243 (244)
69 2qk2_A LP04448P; mini spindles 93.9 1.2 4.2E-05 45.3 15.8 150 611-763 56-216 (242)
70 3l9t_A Putative uncharacterize 93.8 0.24 8.2E-06 51.6 10.1 118 605-729 64-186 (240)
71 1w3b_A UDP-N-acetylglucosamine 93.6 8.6 0.0003 40.8 28.2 285 420-731 77-367 (388)
72 3tjz_B Coatomer subunit gamma; 93.4 1 3.5E-05 49.7 14.9 230 430-710 106-348 (355)
73 3hym_B Cell division cycle pro 92.2 9 0.00031 38.9 19.6 224 421-662 67-299 (330)
74 3nmw_A APC variant protein; AR 92.0 4 0.00014 44.8 17.3 153 613-774 172-351 (354)
75 3nmz_A APC variant protein; pr 91.9 8.4 0.00029 43.8 20.4 63 656-718 384-453 (458)
76 1lrv_A LRV, leucine-rich repea 91.4 0.019 6.6E-07 60.3 -2.1 189 470-749 55-243 (244)
77 2gw1_A Mitochondrial precursor 90.2 24 0.00081 38.4 23.7 230 482-731 236-477 (514)
78 3ieg_A DNAJ homolog subfamily 89.7 19 0.00066 36.7 25.8 303 420-742 13-345 (359)
79 1fch_A Peroxisomal targeting s 89.4 6.7 0.00023 40.9 15.6 270 407-694 22-311 (368)
80 3nmz_A APC variant protein; pr 89.4 33 0.0011 38.9 22.6 104 613-718 288-411 (458)
81 3tjz_B Coatomer subunit gamma; 89.4 2.3 7.9E-05 46.9 12.2 103 407-511 117-220 (355)
82 3opb_A SWI5-dependent HO expre 88.5 28 0.00096 42.1 21.6 98 613-713 608-726 (778)
83 1w3b_A UDP-N-acetylglucosamine 87.5 32 0.0011 36.3 26.5 279 422-729 45-331 (388)
84 2y4t_A DNAJ homolog subfamily 86.9 36 0.0012 36.4 23.3 307 429-757 11-345 (450)
85 2gw1_A Mitochondrial precursor 86.7 39 0.0013 36.7 22.9 222 420-661 247-477 (514)
86 3ieg_A DNAJ homolog subfamily 86.5 30 0.001 35.2 25.0 264 420-700 47-339 (359)
87 3oc3_A Helicase MOT1, MOT1; re 86.5 6.1 0.00021 46.0 13.4 207 466-714 175-403 (800)
88 2pl2_A Hypothetical conserved 86.1 25 0.00086 34.4 16.7 54 486-544 8-63 (217)
89 3ro2_A PINS homolog, G-protein 85.3 14 0.00048 37.2 14.7 115 419-535 14-138 (338)
90 1lsh_A Lipovitellin (LV-1N, LV 85.0 17 0.00058 45.7 18.0 229 324-588 310-559 (1056)
91 4eqf_A PEX5-related protein; a 84.5 41 0.0014 35.0 19.8 54 636-694 219-273 (365)
92 3sf4_A G-protein-signaling mod 83.6 20 0.00068 37.6 15.5 194 421-617 58-290 (406)
93 3cv0_A Peroxisome targeting si 82.1 33 0.0011 34.6 16.1 84 421-509 32-116 (327)
94 4a1s_A PINS, partner of inscut 82.1 27 0.00092 37.0 16.0 124 410-535 46-181 (411)
95 3ulq_A Response regulator aspa 82.0 56 0.0019 34.6 21.7 198 422-622 115-331 (383)
96 2vq2_A PILW, putative fimbrial 81.8 35 0.0012 32.1 19.3 13 599-611 118-130 (225)
97 2pl2_A Hypothetical conserved 81.1 42 0.0014 32.7 15.9 180 522-719 7-200 (217)
98 2q7f_A YRRB protein; TPR, prot 80.5 42 0.0014 32.2 16.7 11 601-611 132-142 (243)
99 3fp2_A TPR repeat-containing p 80.1 74 0.0025 34.8 22.4 251 425-695 217-489 (537)
100 3qou_A Protein YBBN; thioredox 80.1 57 0.0019 33.5 18.1 159 562-732 121-285 (287)
101 2q7f_A YRRB protein; TPR, prot 79.7 44 0.0015 32.0 16.8 205 518-738 21-228 (243)
102 2qk1_A Protein STU2; STU2P, XM 79.2 18 0.00063 37.2 12.9 149 610-761 59-229 (249)
103 3mkq_B Coatomer subunit alpha; 78.6 17 0.0006 35.9 11.7 103 183-296 10-129 (177)
104 3sf4_A G-protein-signaling mod 77.9 70 0.0024 33.2 20.2 195 420-617 19-250 (406)
105 3nf1_A KLC 1, kinesin light ch 77.8 51 0.0017 32.8 15.7 172 412-586 27-223 (311)
106 4eqf_A PEX5-related protein; a 77.7 59 0.002 33.7 16.7 226 420-660 75-308 (365)
107 3fp2_A TPR repeat-containing p 77.7 87 0.003 34.2 23.0 181 521-717 244-431 (537)
108 2ho1_A Type 4 fimbrial biogene 76.9 56 0.0019 31.7 21.5 16 524-539 75-90 (252)
109 3ulq_A Response regulator aspa 74.3 91 0.0031 32.8 18.8 205 411-619 142-364 (383)
110 3qky_A Outer membrane assembly 73.7 74 0.0025 31.5 16.3 18 598-615 152-169 (261)
111 2ho1_A Type 4 fimbrial biogene 73.6 68 0.0023 31.0 19.8 204 521-738 38-244 (252)
112 1lsh_A Lipovitellin (LV-1N, LV 73.4 34 0.0012 43.0 15.3 81 666-754 493-576 (1056)
113 3qou_A Protein YBBN; thioredox 72.4 39 0.0013 34.7 13.4 55 485-544 119-175 (287)
114 1fch_A Peroxisomal targeting s 70.5 1E+02 0.0034 31.7 20.5 219 483-719 64-300 (368)
115 3nf1_A KLC 1, kinesin light ch 65.5 1.1E+02 0.0038 30.3 16.3 174 441-618 22-219 (311)
116 3as5_A MAMA; tetratricopeptide 63.6 83 0.0028 28.2 15.6 11 600-610 116-126 (186)
117 3mkr_A Coatomer subunit epsilo 63.4 1.4E+02 0.0048 30.7 25.0 243 466-737 18-269 (291)
118 3opb_A SWI5-dependent HO expre 63.2 1.4E+02 0.0048 36.1 16.9 107 611-717 545-685 (778)
119 3cv0_A Peroxisome targeting si 62.8 1.3E+02 0.0043 30.0 20.1 94 444-545 19-114 (327)
120 2vq2_A PILW, putative fimbrial 60.9 1.1E+02 0.0037 28.6 20.1 203 522-738 10-217 (225)
121 3edt_B KLC 2, kinesin light ch 59.2 1.3E+02 0.0045 29.0 16.9 143 441-586 38-197 (283)
122 3mkq_A Coatomer beta'-subunit; 57.3 38 0.0013 39.7 10.8 52 239-294 723-774 (814)
123 3q15_A PSP28, response regulat 57.2 1.9E+02 0.0065 30.3 19.4 198 422-622 113-328 (378)
124 3jxy_A Alkylpurine DNA glycosy 57.2 1E+02 0.0035 31.3 12.7 86 638-728 121-207 (232)
125 1hz4_A MALT regulatory protein 56.8 1.9E+02 0.0064 30.0 24.1 246 410-659 14-279 (373)
126 2pm7_A Protein WEB1, protein t 55.7 47 0.0016 37.0 10.4 99 182-293 160-275 (399)
127 4gmo_A Putative uncharacterize 55.6 11 0.00036 45.0 5.5 65 650-715 34-105 (684)
128 1xi4_A Clathrin heavy chain; a 54.1 40 0.0014 43.7 10.4 101 181-291 1137-1260(1630)
129 3tt9_A Plakophilin-2; cell adh 54.1 49 0.0017 34.0 9.6 49 661-709 62-118 (233)
130 4f3v_A ESX-1 secretion system 53.6 88 0.003 33.0 11.7 135 410-549 102-237 (282)
131 3as5_A MAMA; tetratricopeptide 52.7 1.3E+02 0.0043 26.9 13.8 17 422-438 20-36 (186)
132 3mkq_A Coatomer beta'-subunit; 51.9 89 0.0031 36.5 12.8 82 182-282 633-724 (814)
133 4abn_A Tetratricopeptide repea 50.3 2.9E+02 0.01 30.4 17.9 18 804-821 382-399 (474)
134 2r5s_A Uncharacterized protein 49.4 65 0.0022 30.0 9.1 21 564-584 46-66 (176)
135 3ro2_A PINS homolog, G-protein 49.2 2E+02 0.007 28.3 19.4 230 486-719 8-278 (338)
136 4f3v_A ESX-1 secretion system 48.0 1.2E+02 0.004 32.1 11.6 133 522-662 104-237 (282)
137 4a1s_A PINS, partner of inscut 47.9 2.6E+02 0.0089 29.1 20.0 63 481-544 46-110 (411)
138 3oc3_A Helicase MOT1, MOT1; re 47.5 1.8E+02 0.0062 34.2 13.4 212 437-673 183-429 (800)
139 2pzi_A Probable serine/threoni 47.0 2.8E+02 0.0095 32.4 16.0 123 484-618 434-558 (681)
140 4abn_A Tetratricopeptide repea 46.5 1.6E+02 0.0056 32.5 13.3 70 421-496 113-183 (474)
141 1hz4_A MALT regulatory protein 46.3 2.7E+02 0.0091 28.8 17.4 211 409-620 90-319 (373)
142 3vtx_A MAMA; tetratricopeptide 45.7 1.8E+02 0.0061 26.6 14.2 15 524-538 9-23 (184)
143 2b6c_A Hypothetical protein EF 45.6 80 0.0028 31.8 9.6 97 638-746 114-211 (220)
144 3vtx_A MAMA; tetratricopeptide 45.5 1.8E+02 0.0061 26.6 15.7 25 634-661 145-169 (184)
145 3tt9_A Plakophilin-2; cell adh 45.2 68 0.0023 32.9 9.0 69 613-684 54-128 (233)
146 3gs3_A Symplekin, LD45768P; he 43.6 1.5E+02 0.0051 30.9 11.4 105 611-718 53-177 (257)
147 3ro3_A PINS homolog, G-protein 43.1 1.6E+02 0.0055 25.3 11.4 137 480-617 6-152 (164)
148 3qky_A Outer membrane assembly 43.0 2.5E+02 0.0085 27.5 17.3 82 522-606 17-101 (261)
149 3b2a_A TON_1937, putative unch 42.9 2.3E+02 0.008 29.5 12.3 128 610-737 70-203 (265)
150 3u4t_A TPR repeat-containing p 40.9 2.6E+02 0.0088 27.0 23.8 231 486-732 6-250 (272)
151 2bb6_A TCII, TC II, transcobal 40.6 93 0.0032 34.8 9.7 152 630-782 84-282 (414)
152 2yhc_A BAMD, UPF0169 lipoprote 39.5 2.6E+02 0.0089 26.9 12.2 24 522-545 43-66 (225)
153 2yhc_A BAMD, UPF0169 lipoprote 39.1 2.7E+02 0.0092 26.8 14.4 61 673-733 151-214 (225)
154 2r5s_A Uncharacterized protein 39.0 1.4E+02 0.0047 27.6 9.6 146 421-579 17-165 (176)
155 4ffb_C Protein STU2; tubulin f 38.9 3.3E+02 0.011 27.7 13.4 101 651-751 103-211 (278)
156 2fo7_A Synthetic consensus TPR 38.7 1.7E+02 0.0057 24.2 12.6 89 524-618 5-93 (136)
157 3q15_A PSP28, response regulat 38.5 3.6E+02 0.012 28.1 21.2 168 448-618 103-285 (378)
158 2pmv_A Gastric intrinsic facto 36.6 97 0.0033 34.5 8.9 93 689-782 138-258 (399)
159 4ga2_A E3 SUMO-protein ligase 35.2 2.5E+02 0.0086 25.3 12.4 13 598-610 35-47 (150)
160 4gyw_A UDP-N-acetylglucosamine 35.1 5.2E+02 0.018 30.7 15.8 151 444-609 7-160 (723)
161 3mv2_B Coatomer subunit epsilo 34.7 4.4E+02 0.015 28.0 14.2 130 598-733 104-241 (310)
162 3o2t_A Symplekin; heat repeat, 32.3 1.7E+02 0.0058 32.3 10.1 103 613-718 65-187 (386)
163 3uq3_A Heat shock protein STI1 30.9 3.4E+02 0.012 25.5 18.7 79 633-719 142-222 (258)
164 1xi4_A Clathrin heavy chain; a 30.5 1.8E+02 0.0062 37.9 10.9 132 94-247 1444-1588(1630)
165 3gyz_A Chaperone protein IPGC; 30.0 3.3E+02 0.011 25.0 11.8 86 521-612 37-122 (151)
166 2db0_A 253AA long hypothetical 29.5 2.6E+02 0.009 28.2 9.7 118 410-531 123-246 (253)
167 2vsy_A XCC0866; transferase, g 29.4 2.7E+02 0.0092 31.2 11.6 148 424-585 3-155 (568)
168 2pm7_A Protein WEB1, protein t 29.0 2.4E+02 0.0082 31.2 10.7 61 182-248 147-212 (399)
169 1xnf_A Lipoprotein NLPI; TPR, 28.6 4E+02 0.014 25.5 22.9 111 465-584 23-137 (275)
170 3gw4_A Uncharacterized protein 27.6 3.5E+02 0.012 24.6 14.6 157 422-582 4-171 (203)
171 3uq3_A Heat shock protein STI1 26.9 4E+02 0.014 25.0 19.2 225 445-694 4-233 (258)
172 1hxi_A PEX5, peroxisome target 25.7 2.4E+02 0.0083 24.4 8.4 21 563-583 56-76 (121)
173 3edt_B KLC 2, kinesin light ch 25.5 4.4E+02 0.015 25.0 16.1 24 521-544 86-109 (283)
174 2xcb_A PCRH, regulatory protei 24.9 3.5E+02 0.012 23.7 11.8 93 484-585 19-113 (142)
175 3mkq_B Coatomer subunit alpha; 24.8 2.8E+02 0.0097 27.2 9.1 90 193-292 7-103 (177)
176 3ro3_A PINS homolog, G-protein 24.8 3.2E+02 0.011 23.2 10.7 98 519-617 8-112 (164)
177 3urz_A Uncharacterized protein 24.7 3.3E+02 0.011 25.8 9.9 94 561-661 7-116 (208)
178 3gw4_A Uncharacterized protein 24.3 4E+02 0.014 24.2 14.4 15 705-719 148-162 (203)
179 3u4t_A TPR repeat-containing p 23.9 4.8E+02 0.017 24.9 19.9 165 523-700 6-175 (272)
180 2ifu_A Gamma-SNAP; membrane fu 23.6 5.8E+02 0.02 25.7 15.9 160 422-585 48-222 (307)
181 2of3_A ZYG-9; multifunctional 23.6 3.6E+02 0.012 28.1 10.2 59 661-719 177-240 (266)
182 3mzk_B Protein transport prote 23.3 2.8E+02 0.0095 31.2 9.9 43 254-296 251-308 (441)
183 3grl_A General vesicular trans 23.2 5.5E+02 0.019 30.3 12.6 74 641-718 116-198 (651)
184 2vsy_A XCC0866; transferase, g 22.2 4.8E+02 0.016 29.1 12.0 143 466-621 8-155 (568)
185 2e2e_A Formate-dependent nitri 21.9 1.9E+02 0.0066 26.3 7.2 118 421-549 21-144 (177)
186 3u0r_A Apoptosis inhibitor 5; 21.5 1.9E+02 0.0063 33.1 7.8 92 610-707 64-155 (507)
187 3urz_A Uncharacterized protein 21.3 5.2E+02 0.018 24.4 12.9 94 521-620 5-114 (208)
188 1wa5_C Importin alpha RE-expor 21.2 1.9E+02 0.0065 35.3 8.8 101 611-713 402-523 (960)
189 4gyw_A UDP-N-acetylglucosamine 20.5 1.1E+03 0.037 27.8 16.5 117 484-611 10-128 (723)
190 1b89_A Protein (clathrin heavy 20.1 5.4E+02 0.018 28.9 11.4 157 68-255 257-448 (449)
No 1
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=100.00 E-value=3.8e-155 Score=1401.24 Aligned_cols=732 Identities=19% Similarity=0.277 Sum_probs=683.6
Q ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCcchHHHHHHHHHHHhhhccCc
Q 002870 49 ELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAE 128 (872)
Q Consensus 49 ~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~~~~ 128 (872)
..++++|+|+|++|+.+||++|+++|+++ |.++.++++.||++||+++|+ .|+++|+|+|||| ||++
T Consensus 18 ~~~l~lL~e~~~~lk~~aL~~l~~~vd~~----------w~eia~~i~~ie~l~ed~~f~-~r~laalvaSkvy--y~Lg 84 (963)
T 4ady_A 18 APLLALLRENQDSVKTYALESINNVVDQL----------WSEISNELPDIEALYDDDTFS-DREMAALIASKVY--YNLG 84 (963)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHH----------HHHHHTTHHHHHHHHSCTTCT-THHHHHHHHHHHH--HHHT
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhhh----------HHHHHhhHHHHHHHHcCCCcc-hHHHHHHHHHHHh--eecc
Confidence 46899999999999999999999999999 679999999999999999998 6999999999998 8999
Q ss_pred ccccchhhhhc-CCCCCCCCcccHHHHHHHHHHHHHHHHhccCc----c------CH-HHHHHHHHHHHHHHhcCCCHHH
Q 002870 129 GERESLKYRLL-GSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDE----A------SI-DDLMELVQEIVAFHMKHNAEPE 196 (872)
Q Consensus 129 ~~~~~L~y~L~-~~~~d~~~wgheYvr~L~~ei~~~y~~~~~~~----~------~~-~~L~~lv~~iv~~~l~~n~e~e 196 (872)
+++|||+|||. |+.||+.+ |||||+||+++|||+|++.+.+. + .+ ++|++||++||+||++||+|+|
T Consensus 85 ~~~~al~yaL~aG~~fd~~~-~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv~~iv~~cl~hnae~~ 163 (963)
T 4ady_A 85 EYESAVKYALAAKDRFDIDE-KSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIFERMIEKCLKASELKL 163 (963)
T ss_dssp CHHHHHHHHHHHGGGSCTTS-CSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred chHHHHHHHHhCCCcCCCCC-cchHHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHhCCCHHH
Confidence 99999999999 58899998 89999999999999999886532 1 23 6999999999999999999999
Q ss_pred HHHHHHhcCChhhhHHHhhc-------cchHHHHHHHHhhcccCCCCChH--HHHHHHHHHHHccC--CHHHHHHHHHhC
Q 002870 197 AVDLLMEVEDLDLLVEHVDA-------TNFKRTCLYLTSAAKYLPGPDDM--LVLDIAYMIYLKFE--EFPNALQIALFL 265 (872)
Q Consensus 197 AvdlalE~~~ld~i~~~vd~-------~~~~rv~~Yl~~~~~~~~~p~~~--~vl~~~~~iy~k~~--~~~~al~~al~l 265 (872)
|||||||++|||+|+++|++ +||.|+|+|+++|++++++|+++ +||+++++||++++ +|+++|+|+++|
T Consensus 164 AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~dy~~a~~~ai~L 243 (963)
T 4ady_A 164 ALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNL 243 (963)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHc
Confidence 99999999999999999998 89999999999999999999986 89999999999987 999999999999
Q ss_pred CChHHHHHHHHh---cchHHHHHHHHHHHHh---hcccccccCCCCCCcccHHHHHHHHcccCcchhHHHHHHHhhccCC
Q 002870 266 DNMQYVKQIFTS---CDDLLRKKQFCYILAR---HGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEP 339 (872)
Q Consensus 266 ~d~~~i~~i~~~---~~d~~~~~Qlaf~lar---q~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~~~ 339 (872)
||++.++++|++ |+|++++|||||+|+| |+|+.++.+... ..+..+++.+||+|..++++|++|++++|.+|+
T Consensus 244 nD~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~-~~e~~~kL~~ILsg~~~~~Lyl~FL~~~n~~d~ 322 (963)
T 4ady_A 244 NDAGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILVTELT-AQGYDPALLNILSGLPTCDYYNTFLLNNKNIDI 322 (963)
T ss_dssp TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHH-HTTCCHHHHHHTTSHHHHHHHHHHHHHHCCCCH
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHhcccchHHHHHHHHhcc-ccchhHHHHHHhCCCChHHHHHHHHHhccccch
Confidence 999999999999 6899999999999996 566654411000 011357899999999999999999999999999
Q ss_pred CChHHHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccCchhHHHHHHHhh
Q 002870 340 KSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLG 419 (872)
Q Consensus 340 k~~~~iyK~~l~~~r~~~~~~~dsa~~~la~~~~nafvnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~~A~aslG 419 (872)
++|+++ |++++ +| ++++|+|++|+|||||+||++|+||+.+.+ |++|+++|+||+|++|||
T Consensus 323 ~~l~~~-K~~ld-~r--------~s~~~~A~~f~Naf~naG~~~D~~l~~~~~---------Wl~k~~~~~k~sA~aSLG 383 (963)
T 4ady_A 323 GLLNKS-KSSLD-GK--------FSLFHTAVSVANGFMHAGTTDNSFIKANLP---------WLGKAQNWAKFTATASLG 383 (963)
T ss_dssp HHHHHH-HHHSC-TT--------SHHHHHHHHHHHHHHTTTTCCCHHHHHCHH---------HHHHCCTHHHHHHHHHHH
T ss_pred hhHHHH-Hhhhc-ch--------hhHHHHHHHHHHHHHhCCCCcchhhhcchh---------hhhccchHHHHHHHHHhh
Confidence 999987 99998 45 478999999999999999999999998866 999999999999999999
Q ss_pred hhccccchhhHHhHhhhcc---CCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCC--------HHHHHHHHHH
Q 002870 420 MILLWDVDSGLAQIDKYFH---STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED--------ACIRIGAIMG 488 (872)
Q Consensus 420 lI~~~~~~~~l~~l~~yL~---s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~--------~~v~~gA~lG 488 (872)
+||.||.++|+++|++||+ ++++++++||++|||++++|++++ ++++|.++|.+++ +.+|+||++|
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~---~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD---TTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH---HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 9999999999999999999 678999999999999999999854 8999999998655 7899999999
Q ss_pred HHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHh
Q 002870 489 LGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGL 568 (872)
Q Consensus 489 LGLay~Gt~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgL 568 (872)
||++|+||+++++++.|++++.|++ ..+..+|++|||+||+||||.++++.|++++++ ++ +++++|++++||||
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e---~~-~e~vrR~aalgLGl 534 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE---TQ-HGNITRGLAVGLAL 534 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---CS-CHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc---cC-cHHHHHHHHHHHHh
Confidence 9999999999999999999998653 234458999999999999999999999999875 34 78999999999999
Q ss_pred hhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhh
Q 002870 569 LYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG 648 (872)
Q Consensus 569 l~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g 648 (872)
+++|++++++.+++.|..+++|+.||++++++||||+||||+.+||+|||.|.+|.++ +|||+||+|||+|++|++
T Consensus 535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d--~VRraAViaLGlI~~g~~-- 610 (963)
T 4ady_A 535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSND--DVRRAAVIALGFVLLRDY-- 610 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTSSSC--
T ss_pred hhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcH--HHHHHHHHHHHhhccCCH--
Confidence 9999999999999999999999999999999999999999999999999999999887 899999999999999999
Q ss_pred HhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCch---HHHHH
Q 002870 649 LEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNA---RIAGM 725 (872)
Q Consensus 649 ~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~---rv~~~ 725 (872)
+|+++++++|++++||+||+|+|+|||++|+|||+++++++|++++||+|++||++|++|||+||+||||+ |++++
T Consensus 611 -e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~ 689 (963)
T 4ady_A 611 -TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADI 689 (963)
T ss_dssp -SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHH
T ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 99999
Q ss_pred HHHhhhhhc---cChhhHHHHHHHHhhhhcCCCceeecccCCCCCCCChHHHHHHHHHHHhhccccccccCchh-HHHHH
Q 002870 726 LRNLSSYYY---KDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYH-YVLYF 801 (872)
Q Consensus 726 lr~l~s~~~---~d~~~~f~~~lAqGll~~G~g~~tlsp~~sd~~~~~~~a~agLl~~l~~~~d~~~~i~~~~h-~l~~~ 801 (872)
||+|++||+ +|++++||+++||||+||||||+||||+||||++++++|++||++|+++| || ||+||
T Consensus 690 l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~s~~~~~~~~a~~Gl~~f~q~w----------yw~pl~~~ 759 (963)
T 4ady_A 690 NKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQFW----------YWFPLAHF 759 (963)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBCTTTCCBCHHHHHHHHHHTTTT----------TCGGGGGG
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCCCHHHHHHHHHHHHHH----------HHHHHHHH
Confidence 999999985 58999999999999999999999999999999999999999999998775 55 59999
Q ss_pred HhhhcccceeeeecC-CCCccceeeeecccccccccCC
Q 002870 802 LVLAMQPRMLLTVDE-NLKPLSVPVRVGQAVDVVGQAG 838 (872)
Q Consensus 802 l~lA~~Pr~li~ld~-~l~~~~v~vrvgqavd~vg~ag 838 (872)
|+|||+|||+||+|+ |||+|+..++++.+-.....+.
T Consensus 760 lsla~~Pt~li~l~e~dL~~p~~~~~~~~~~~~f~yp~ 797 (963)
T 4ady_A 760 LSLSFTPTTVIGIRGSDQAIPKFQMNCYAKEDAFSYPR 797 (963)
T ss_dssp GGGGEEECBEEEEETTTTBEECCEEEECSCTTTTCCCC
T ss_pred HHHhcCCcEEEEecccccCCCceEEeeCCChhhcCCCC
Confidence 999999999999999 9999999999999999988765
No 2
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=100.00 E-value=2.6e-51 Score=496.51 Aligned_cols=519 Identities=19% Similarity=0.256 Sum_probs=392.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccchHHHH------HHHHhhccc-----------CCCC
Q 002870 174 IDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTC------LYLTSAAKY-----------LPGP 236 (872)
Q Consensus 174 ~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~------~Yl~~~~~~-----------~~~p 236 (872)
-++|.++|.+.|+||+ ++|.+|+.+||.++.+..+.+ .+.|.+.+ .|...+..- -++|
T Consensus 68 ~r~laalvaSkvyy~L--g~~~~al~yaL~aG~~fd~~~---~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~ 142 (963)
T 4ady_A 68 DREMAALIASKVYYNL--GEYESAVKYALAAKDRFDIDE---KSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDP 142 (963)
T ss_dssp THHHHHHHHHHHHHHH--TCHHHHHHHHHHHGGGSCTTS---CSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCH
T ss_pred hHHHHHHHHHHHheec--cchHHHHHHHHhCCCcCCCCC---cchHHHHHHHHHHHHHHHHHhhccccccccccccccCH
Confidence 4799999999999999 999999999999998875542 34443333 455444321 3456
Q ss_pred ChHHHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhc--ch--HHHHHHHHHHH--H---------hhccc----
Q 002870 237 DDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSC--DD--LLRKKQFCYIL--A---------RHGIT---- 297 (872)
Q Consensus 237 ~~~~vl~~~~~iy~k~~~~~~al~~al~l~d~~~i~~i~~~~--~d--~~~~~Qlaf~l--a---------rq~~~---- 297 (872)
+...+.+.++.-|++++.|.+|+.++++..+.|.++++++++ +| ....+=+.|.+ + |.+++
T Consensus 143 rL~~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~ 222 (963)
T 4ady_A 143 KLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSF 222 (963)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Confidence 666899999999999999999999999999999999999872 01 11111111222 1 11111
Q ss_pred ---ccccCCCCC--------CcccHHHHHHHHccc----C--------------cchhHHH-----------HHHHhhcc
Q 002870 298 ---LELDDDMVP--------DDDDRYALQDIVNNV----K--------------LSEGYLT-----------LARDIEVM 337 (872)
Q Consensus 298 ---~~~~~~~~~--------~~~~~~~l~~il~n~----~--------------l~~~~~~-----------~~~~l~i~ 337 (872)
.++.. +.. .-++.+.+.+++... . -+..|+. +.+.++|+
T Consensus 223 ~Iy~k~~~-~dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~IL 301 (963)
T 4ady_A 223 DFLMNMPN-CDYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPALLNIL 301 (963)
T ss_dssp HHHHHSSS-CCHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHHT
T ss_pred HHHHhCCc-hhHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHHHHHHh
Confidence 11110 000 000122233333320 0 0123332 34778999
Q ss_pred CCCChHHHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccCchhHHHHHHH
Q 002870 338 EPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAAS 417 (872)
Q Consensus 338 ~~k~~~~iyK~~l~~~r~~~~~~~dsa~~~la~~~~nafvnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~~A~as 417 (872)
+++.+.++|++||.+++.++...++..+.++.. .++.. -..++.+
T Consensus 302 sg~~~~~Lyl~FL~~~n~~d~~~l~~~K~~ld~--r~s~~---------------------------------~~A~~f~ 346 (963)
T 4ady_A 302 SGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDG--KFSLF---------------------------------HTAVSVA 346 (963)
T ss_dssp TSHHHHHHHHHHHHHHCCCCHHHHHHHHHHSCT--TSHHH---------------------------------HHHHHHH
T ss_pred CCCChHHHHHHHHHhccccchhhHHHHHhhhcc--hhhHH---------------------------------HHHHHHH
Confidence 999999999999997777776555555544321 11111 1234455
Q ss_pred hhhhccccchhh-HHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcC---CCCHHHHHHHHHHHHHHh
Q 002870 418 LGMILLWDVDSG-LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG---REDACIRIGAIMGLGISY 493 (872)
Q Consensus 418 lGlI~~~~~~~~-l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~---~~~~~v~~gA~lGLGLay 493 (872)
.|+||.|...+. +..-.+|+++..+|.++||+++||+||.|+.++ .+.+|.+||. ++++.+++||++|||+++
T Consensus 347 Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~---gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ 423 (963)
T 4ady_A 347 NGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLE---GKKVMAPYLPGSRASSRFIKGGSLYGLGLIY 423 (963)
T ss_dssp HHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTT---HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHH---HHHHHHHhccccCCCcHHHHHHHHHHHHHhc
Confidence 677777766554 333345788889999999999999999999877 8999999998 567899999999999999
Q ss_pred ccCCCHHHHHHHHHHhcCCC-C-----chHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHH
Q 002870 494 AGTQNDQIRHKLSTILNDAK-S-----PLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLG 567 (872)
Q Consensus 494 ~Gt~~~~i~e~L~~~L~d~~-~-----~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglg 567 (872)
+|+++ ++++.|.+.+.+++ + ...++++|++|||++|+||+++++++.|++.|.+.+ .....++
T Consensus 424 ag~~~-~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-----~~~~~~A----- 492 (963)
T 4ady_A 424 AGFGR-DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-----ATSGEAA----- 492 (963)
T ss_dssp TTTTH-HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-----HHHHHHH-----
T ss_pred CCCcH-HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-----HHHHHHH-----
Confidence 99986 68999999997432 1 134678999999999999999999999999876321 1122244
Q ss_pred hhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchh
Q 002870 568 LLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEEL 647 (872)
Q Consensus 568 Ll~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~ 647 (872)
++++|+.|+||||.++++.||+++.++.++ ++||++++|||||++|++
T Consensus 493 -----------------------------alALGli~vGTgn~~ai~~LL~~~~e~~~e--~vrR~aalgLGll~~g~~- 540 (963)
T 4ady_A 493 -----------------------------ALGMGLCMLGTGKPEAIHDMFTYSQETQHG--NITRGLAVGLALINYGRQ- 540 (963)
T ss_dssp -----------------------------HHHHHHHHTTCCCHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTTTCG-
T ss_pred -----------------------------HHHHhhhhcccCCHHHHHHHHHHHhccCcH--HHHHHHHHHHHhhhCCCh-
Confidence 444555557999999999999999988776 899999999999999999
Q ss_pred hHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHH-HHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHH
Q 002870 648 GLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMD-TLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGML 726 (872)
Q Consensus 648 g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid-~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~l 726 (872)
+.++.+++.|..+.||++|+|+++|+|+.||||||..+|+ +|..+..|++++||++|++|+|+|++|..+ .+.+++
T Consensus 541 --e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e-~v~rlv 617 (963)
T 4ady_A 541 --ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT-TVPRIV 617 (963)
T ss_dssp --GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS-SHHHHT
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH-HHHHHH
Confidence 8999999999999999999999999999999999999999 788889999999999999999999999875 244455
Q ss_pred HHhhhhhccChhhHHHHHHHHhhhhcCCCce----eecccCCCC-CCCChHHHHHHHHHHHhh
Q 002870 727 RNLSSYYYKDANLLFCVRIAQGLVHMGKGLL----TLNPYHSDR-FLLSPTALAGIVTTLFAC 784 (872)
Q Consensus 727 r~l~s~~~~d~~~~f~~~lAqGll~~G~g~~----tlsp~~sd~-~~~~~~a~agLl~~l~~~ 784 (872)
+.|.. +.||++|+|+.+|+|++++|.|+. +|+++.+|. ..+++.|+.+|.++..--
T Consensus 618 ~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 618 QLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp TTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred HHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence 54444 469999999999999999999974 688988888 789999999999887543
No 3
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.86 E-value=1.8e-07 Score=98.95 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=72.3
Q ss_pred hhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhH
Q 002870 588 NEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNI 667 (872)
Q Consensus 588 ~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~V 667 (872)
+++..|..++.+++ . .|+..++..|+..+.+ .+ +.||..|+.+++.+....+ .+...+..++++.++.|
T Consensus 140 ~~~~vR~~a~~aL~--~--~~~~~~~~~L~~~l~d-~~--~~vr~~a~~aL~~~~~~~~----~~~~~L~~~l~d~~~~v 208 (280)
T 1oyz_A 140 KSTNVRRATAFAIS--V--INDKATIPLLINLLKD-PN--GDVRNWAAFAININKYDNS----DIRDCFVEMLQDKNEEV 208 (280)
T ss_dssp SCHHHHHHHHHHHH--T--C---CCHHHHHHHHTC-SS--HHHHHHHHHHHHHHTCCCH----HHHHHHHHHTTCSCHHH
T ss_pred CCHHHHHHHHHHHH--h--cCCHHHHHHHHHHHcC-CC--HHHHHHHHHHHHhhccCcH----HHHHHHHHHhcCCCHHH
Confidence 44445554444332 2 2333345555555432 22 2677788887777643333 33444445556777888
Q ss_pred HhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhh
Q 002870 668 RRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLS 730 (872)
Q Consensus 668 R~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~ 730 (872)
|..++.+||-+ ++.+++..|.++..|++ ||..|+.|+|-++- +++...|.++.
T Consensus 209 R~~A~~aL~~~----~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----~~~~~~L~~~l 261 (280)
T 1oyz_A 209 RIEAIIGLSYR----KDKRVLSVLCDELKKNT--VYDDIIEAAGELGD----KTLLPVLDTML 261 (280)
T ss_dssp HHHHHHHHHHT----TCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----GGGHHHHHHHH
T ss_pred HHHHHHHHHHh----CCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----hhhhHHHHHHH
Confidence 88888888877 36677888777777755 78888888888743 34444454443
No 4
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.86 E-value=1.7e-07 Score=99.14 Aligned_cols=250 Identities=12% Similarity=0.083 Sum_probs=168.9
Q ss_pred hHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC-CHHHHHHHHH
Q 002870 429 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ-NDQIRHKLST 507 (872)
Q Consensus 429 ~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~-~~~i~e~L~~ 507 (872)
++..|.+.|.++++.++..|+.+||-+.. ..++..|...+.++++.+|..|+.+||-...... -..+.+.|..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~ 97 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNN 97 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 35566677888899999999999998752 2378888889999999999999999987532211 1223334442
Q ss_pred H-hcCCCCchHHHHHHHHHHHhHhcCC--CCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHH
Q 002870 508 I-LNDAKSPLDVIAFSAISLGLIYVGS--CNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVS 584 (872)
Q Consensus 508 ~-L~d~~~~~e~~~~AaLALGLi~lGs--~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L 584 (872)
. +.|+ +.++...|+.+||.+..+. ..+++++.++..|. + .++..|..+ ..+|..+|.++.++.+++.+
T Consensus 98 ~~~~d~--~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~--d----~~~~vR~~a-~~aL~~~~~~~~~~~L~~~l 168 (280)
T 1oyz_A 98 MALNDK--SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF--D----KSTNVRRAT-AFAISVINDKATIPLLINLL 168 (280)
T ss_dssp HHHHCS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT--C----SCHHHHHHH-HHHHHTC---CCHHHHHHHH
T ss_pred HHhcCC--CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh--C----CCHHHHHHH-HHHHHhcCCHHHHHHHHHHH
Confidence 2 3454 5567778999999874322 13456666655432 1 234455433 23455677777888888876
Q ss_pred hhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCC
Q 002870 585 KTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGE 664 (872)
Q Consensus 585 ~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~ 664 (872)
. ++++..|..++.+++ ..|..+..++..|+....+. + +.||..|+.++|-+. ++ +.++.++..| ++
T Consensus 169 ~-d~~~~vr~~a~~aL~--~~~~~~~~~~~~L~~~l~d~-~--~~vR~~A~~aL~~~~--~~---~~~~~L~~~l-~d-- 234 (280)
T 1oyz_A 169 K-DPNGDVRNWAAFAIN--INKYDNSDIRDCFVEMLQDK-N--EEVRIEAIIGLSYRK--DK---RVLSVLCDEL-KK-- 234 (280)
T ss_dssp T-CSSHHHHHHHHHHHH--HHTCCCHHHHHHHHHHTTCS-C--HHHHHHHHHHHHHTT--CG---GGHHHHHHHH-TS--
T ss_pred c-CCCHHHHHHHHHHHH--hhccCcHHHHHHHHHHhcCC-C--HHHHHHHHHHHHHhC--CH---hhHHHHHHHh-cC--
Confidence 5 466778887777664 45777888888888887543 2 379999999999875 44 4555555555 43
Q ss_pred hhHHhHHHHHHhhhccCCCchHHHHHHHHhhcC-CchHHHHHHHHHHH
Q 002870 665 QNIRRAVPLALGLLCISNPKVNVMDTLSRLSHD-TDSEVAMAAVISLG 711 (872)
Q Consensus 665 ~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D-~d~~Vr~~AiiAlG 711 (872)
+.||..++.|||-+ +..+++..|..+..+ ++..+++.++-++.
T Consensus 235 ~~vr~~a~~aL~~i----~~~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 235 NTVYDDIIEAAGEL----GDKTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp SSCCHHHHHHHHHH----CCGGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhc----CchhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 45999999999988 456889999888755 45667766665553
No 5
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.71 E-value=2.3e-07 Score=93.76 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=63.5
Q ss_pred CHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHH
Q 002870 609 NVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVM 688 (872)
Q Consensus 609 n~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~ai 688 (872)
+..++..|+..+. +.+. .||..|+.++|-+ +++ +.+ ..+..++++.++.||..++.+||-+ +..+++
T Consensus 110 ~~~~~~~L~~~l~-d~~~--~vr~~a~~aL~~~--~~~---~~~-~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~ 176 (211)
T 3ltm_A 110 DERAVEPLIKALK-DEDW--FVRIAAAFALGEI--GDE---RAV-EPLIKALKDEDGWVRQSAADALGEI----GGERVR 176 (211)
T ss_dssp CGGGHHHHHHHTT-CSSH--HHHHHHHHHHHHH--CCG---GGH-HHHHHHTTCSSHHHHHHHHHHHHHH----CSHHHH
T ss_pred cHHHHHHHHHHHh-CCCH--HHHHHHHHHHHHc--CCH---HHH-HHHHHHHcCCCHHHHHHHHHHHHHh----CchhHH
Confidence 3444555555553 2222 6788888888776 333 333 3444455777888888888888887 567888
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHcCCC
Q 002870 689 DTLSRLSHDTDSEVAMAAVISLGLIGSGT 717 (872)
Q Consensus 689 d~L~~l~~D~d~~Vr~~AiiAlGlV~aGt 717 (872)
+.|.++.+|++..||..|+-+|+-+.-..
T Consensus 177 ~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 177 AAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 88888888888888888888887765443
No 6
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.65 E-value=5.4e-07 Score=90.34 Aligned_cols=182 Identities=20% Similarity=0.202 Sum_probs=106.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHH
Q 002870 466 ALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFA 545 (872)
Q Consensus 466 ~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~ 545 (872)
....+...|.+++..+|..|+-.||-. | +++..+.|...+.|+ +..+...|+.+||.+ ++.+.++.++..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~--~--~~~~~~~L~~~l~~~--~~~vr~~a~~~L~~~----~~~~~~~~L~~~ 84 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKI--G--DERAVEPLIKALKDE--DAWVRRAAADALGQI----GDERAVEPLIKA 84 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHH--C--CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH----CCGGGHHHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhc--C--ChhHHHHHHHHHcCC--CHHHHHHHHHHHHhh----CCHHHHHHHHHH
Confidence 455556666666666666666666643 2 234555566665543 334445566666654 333444444443
Q ss_pred HhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCC
Q 002870 546 LMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHE 625 (872)
Q Consensus 546 L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~ 625 (872)
| . +++|..|..++.+++ . .|+..++..|+..+. +.+
T Consensus 85 l--------------------------------------~-d~~~~vr~~a~~aL~--~--~~~~~~~~~L~~~l~-d~~ 120 (201)
T 3ltj_A 85 L--------------------------------------K-DEDGWVRQSAAVALG--Q--IGDERAVEPLIKALK-DED 120 (201)
T ss_dssp T--------------------------------------T-CSSHHHHHHHHHHHH--H--HCCGGGHHHHHHHTT-CSS
T ss_pred H--------------------------------------c-CCCHHHHHHHHHHHH--H--hCcHHHHHHHHHHHc-CCC
Confidence 3 1 122223332222221 1 123334455555543 222
Q ss_pred CCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHH
Q 002870 626 KGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMA 705 (872)
Q Consensus 626 d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~ 705 (872)
+.||..|+.++|-+. ++ + +...+..++++.++.||..++.|||-+ +..+++..|..+..|++..||..
T Consensus 121 --~~vr~~a~~aL~~~~--~~---~-~~~~L~~~l~d~~~~vr~~A~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~ 188 (201)
T 3ltj_A 121 --WFVRIAAAFALGEIG--DE---R-AVEPLIKALKDEDGWVRQSAADALGEI----GGERVRAAMEKLAETGTGFARKV 188 (201)
T ss_dssp --HHHHHHHHHHHHHHT--CG---G-GHHHHHHHTTCSSHHHHHHHHHHHHHH----CSHHHHHHHHHHHHHCCHHHHHH
T ss_pred --HHHHHHHHHHHHHhC--CH---H-HHHHHHHHHcCCCHHHHHHHHHHHHHh----CchhHHHHHHHHHhCCCHHHHHH
Confidence 267778877777763 33 3 333445555777888898888888887 66788888888888888888888
Q ss_pred HHHHHHHH
Q 002870 706 AVISLGLI 713 (872)
Q Consensus 706 AiiAlGlV 713 (872)
|+-+++-+
T Consensus 189 A~~aL~~l 196 (201)
T 3ltj_A 189 AVNYLETH 196 (201)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 88888754
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.53 E-value=2.4e-06 Score=98.55 Aligned_cols=332 Identities=10% Similarity=-0.014 Sum_probs=190.9
Q ss_pred hHHHHHHHhhhhccccc----hhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCC--hhhHHHHHHhhcCCCCHHHHH
Q 002870 410 GKMSAAASLGMILLWDV----DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND--CDPALALLSEYVGREDACIRI 483 (872)
Q Consensus 410 ~k~~A~aslGlI~~~~~----~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e--~d~~~~lL~~~L~~~~~~v~~ 483 (872)
.|..|...+|.+...-. +.-+..+...+.++++.+|..|+-++|-+......+ ...++..|...+.+++..+|.
T Consensus 142 ~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~ 221 (588)
T 1b3u_A 142 SRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRL 221 (588)
T ss_dssp HHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHH
Confidence 34555555555433211 122333344446778999999999999886533221 123566677777888899999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHh----cCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc-CccccCchh
Q 002870 484 GAIMGLGISYAGTQNDQIRHKLSTIL----NDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR-SESELGEPL 558 (872)
Q Consensus 484 gA~lGLGLay~Gt~~~~i~e~L~~~L----~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~-~~~~l~e~~ 558 (872)
.|+.+||.+......++..+.++|.+ .|+ +..+...|+-+||.+.-+.+.+...+.++..+... .+. +..+
T Consensus 222 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~v 297 (588)
T 1b3u_A 222 LAVEACVNIAQLLPQEDLEALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEV 297 (588)
T ss_dssp THHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCS--SHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCS--SHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCC--cHHH
Confidence 99999998766555555555555554 344 45667788899998865444332233344433322 111 2345
Q ss_pred HhHHHHHHHhhh--cCCh----hhHH---HHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHH----HHHHhhcccCC
Q 002870 559 TRLIPLGLGLLY--LGKQ----ESVE---ATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQ----NLLGHCAQHHE 625 (872)
Q Consensus 559 ~r~~~lglgLl~--~G~~----e~a~---~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~----~LL~~~~~~~~ 625 (872)
.+.++-+++-+. +|.. ...+ ..+..+..++++..|..++.+++--.-..|...... .++..+. +.+
T Consensus 298 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-d~~ 376 (588)
T 1b3u_A 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK-DEC 376 (588)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHT-CSC
T ss_pred HHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-CCc
Confidence 556666666443 3332 1122 233334455667777665544332222223332222 2334433 323
Q ss_pred CCccchhhhHhHhhhhhhc--chhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCC----chHHHHHHHHhhcCCc
Q 002870 626 KGEAYQGPAVLGIAMVAMA--EELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP----KVNVMDTLSRLSHDTD 699 (872)
Q Consensus 626 d~~~vrr~Avl~iglI~~~--~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~----~~~aid~L~~l~~D~d 699 (872)
++||..++-+++-+.-. .+.-.+.+...+..++++.++.+|.+++-+++.+.-.-+ ...++..|.++.+|++
T Consensus 377 --~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 454 (588)
T 1b3u_A 377 --PEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHV 454 (588)
T ss_dssp --HHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSS
T ss_pred --hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCc
Confidence 27998888888766432 110012233334455677889999999999987643211 3467888889999999
Q ss_pred hHHHHHHHHHHHHHcCCCCch----HHHHHHHHhhhhhccChhhHHHHHHHHhhh
Q 002870 700 SEVAMAAVISLGLIGSGTNNA----RIAGMLRNLSSYYYKDANLLFCVRIAQGLV 750 (872)
Q Consensus 700 ~~Vr~~AiiAlGlV~aGt~n~----rv~~~lr~l~s~~~~d~~~~f~~~lAqGll 750 (872)
..||..|+-++|-+....++. .+...+..+.+ +.++..|..+.-+.|-+
T Consensus 455 ~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~--~~~~~~R~~a~~~l~~l 507 (588)
T 1b3u_A 455 YAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSG--DPNYLHRMTTLFCINVL 507 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTT--CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHH
Confidence 999999999999886544332 23333333221 34556666666666654
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.52 E-value=5.7e-06 Score=95.45 Aligned_cols=332 Identities=13% Similarity=0.055 Sum_probs=196.6
Q ss_pred hHHHHHHHhhhhcc--c---cchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCCh--hhHHHHHHhhcCCCCHHHH
Q 002870 410 GKMSAAASLGMILL--W---DVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC--DPALALLSEYVGREDACIR 482 (872)
Q Consensus 410 ~k~~A~aslGlI~~--~---~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~--d~~~~lL~~~L~~~~~~v~ 482 (872)
.+..++-.+|-+.. + +...-+..|...+.++++.+|..|.-+++-+......+. ..++.++.....+++..+|
T Consensus 64 vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R 143 (588)
T 1b3u_A 64 VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSR 143 (588)
T ss_dssp HHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 45666667775432 1 122234445444556788999999999998876443211 1244555555567788899
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHh----cCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchh
Q 002870 483 IGAIMGLGISYAGTQNDQIRHKLSTIL----NDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPL 558 (872)
Q Consensus 483 ~gA~lGLGLay~Gt~~~~i~e~L~~~L----~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~ 558 (872)
.+|+..+|.++-... +...+.+.|.+ .|+ +.+++..|+-+||-+.--.+.+...+.++..+......+ ...+
T Consensus 144 ~~a~~~l~~~~~~~~-~~~~~~l~~~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-~~~v 219 (588)
T 1b3u_A 144 TSACGLFSVCYPRVS-SAVKAELRQYFRNLCSDD--TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE-QDSV 219 (588)
T ss_dssp HHHGGGHHHHTTTSC-HHHHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCS-CHHH
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCC-cHHH
Confidence 999999998765433 34445555554 455 567778899999988654444444455555544321111 2334
Q ss_pred HhHHHHHHHhhh--cCChhh---HHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCH----HHHHHHHHhhcccCCCCcc
Q 002870 559 TRLIPLGLGLLY--LGKQES---VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV----LKVQNLLGHCAQHHEKGEA 629 (872)
Q Consensus 559 ~r~~~lglgLl~--~G~~e~---a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~----~~i~~LL~~~~~~~~d~~~ 629 (872)
.+.++.+++-+. ++.++. +-..+..+..++++..|..++.+++-...+.|.. ..+..+++.+.+ .+ +.
T Consensus 220 r~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~--~~ 296 (588)
T 1b3u_A 220 RLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKD-CE--AE 296 (588)
T ss_dssp HTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTC-SS--HH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCC-Cc--HH
Confidence 445555555433 232222 2233444555667778887776666554444432 234445555543 23 27
Q ss_pred chhhhHhHhhhhhhcchh------hHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch----HHHHHHHHhhcCCc
Q 002870 630 YQGPAVLGIAMVAMAEEL------GLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV----NVMDTLSRLSHDTD 699 (872)
Q Consensus 630 vrr~Avl~iglI~~~~~~------g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~----~aid~L~~l~~D~d 699 (872)
||+.+.-+++-+.-.-+. -.+.+...+..++++.++.||.+++.+++-++..-|.. .++..|..+.+|.+
T Consensus 297 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~ 376 (588)
T 1b3u_A 297 VRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDEC 376 (588)
T ss_dssp HHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCc
Confidence 999999988877643210 01234445556678889999999999999886443332 35566778889999
Q ss_pred hHHHHHHHHHHHHHcCCCCc----hHHHHHHHHhhhhhccChhhHHHHHHHHhhh
Q 002870 700 SEVAMAAVISLGLIGSGTNN----ARIAGMLRNLSSYYYKDANLLFCVRIAQGLV 750 (872)
Q Consensus 700 ~~Vr~~AiiAlGlV~aGt~n----~rv~~~lr~l~s~~~~d~~~~f~~~lAqGll 750 (872)
+.||..|+-+++-+....+. ..+...+.++.+ .++...+..+.-+.|-+
T Consensus 377 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~--d~~~~vr~~~~~~l~~l 429 (588)
T 1b3u_A 377 PEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE--DAKWRVRLAIIEYMPLL 429 (588)
T ss_dssp HHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHH
Confidence 99999999998887654442 223333333221 23445555555555543
No 9
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.48 E-value=2.8e-06 Score=85.78 Aligned_cols=187 Identities=18% Similarity=0.180 Sum_probs=133.4
Q ss_pred CCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHH
Q 002870 534 CNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKV 613 (872)
Q Consensus 534 ~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i 613 (872)
.+++.++.++..|.+ .+...|..+ .-+|..+|..+.++.+++.+.. +++..|..++.+++- . |+...+
T Consensus 16 ~~~~~~~~L~~~L~~------~~~~vR~~A-~~~L~~~~~~~~~~~L~~~l~~-~~~~vr~~a~~aL~~--~--~~~~~~ 83 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQD------DSYYVRRAA-AYALGKIGDERAVEPLIKALKD-EDAWVRRAAADALGQ--I--GDERAV 83 (211)
T ss_dssp CCGGGHHHHHHHTTC------SSHHHHHHH-HHHHHHHCCGGGHHHHHHHTTC-SCHHHHHHHHHHHHH--H--CCGGGH
T ss_pred cCHhHHHHHHHHHcC------CCHHHHHHH-HHHHHHhCCccHHHHHHHHHcC-CCHHHHHHHHHHHHh--h--CCHHHH
Confidence 567788888887531 234445433 2235567788888999887764 577888777665543 3 455667
Q ss_pred HHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHH
Q 002870 614 QNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 693 (872)
Q Consensus 614 ~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~ 693 (872)
..|+..+.+ .+ +.+|..++.+++-+ +++ +.++.++ .++.+.++.||..++.+||-+ +..++++.|.+
T Consensus 84 ~~L~~~l~~-~~--~~vr~~a~~aL~~~--~~~---~~~~~L~-~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~ 150 (211)
T 3ltm_A 84 EPLIKALKD-ED--GWVRQSAAVALGQI--GDE---RAVEPLI-KALKDEDWFVRIAAAFALGEI----GDERAVEPLIK 150 (211)
T ss_dssp HHHHHHTTC-SS--HHHHHHHHHHHHHH--CCG---GGHHHHH-HHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHH
T ss_pred HHHHHHHcC-CC--HHHHHHHHHHHHHh--CcH---HHHHHHH-HHHhCCCHHHHHHHHHHHHHc----CCHHHHHHHHH
Confidence 777777643 23 37999999999876 444 4444444 466888999999999999988 56788999999
Q ss_pred hhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhhccChhhHHHHHHHHhhhh
Q 002870 694 LSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVH 751 (872)
Q Consensus 694 l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~s~~~~d~~~~f~~~lAqGll~ 751 (872)
+.+|++..||..|+.++|-++ .+++...|.++.+ ..++.++..+.-|++-+.
T Consensus 151 ~l~d~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l~--d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 151 ALKDEDGWVRQSAADALGEIG----GERVRAAMEKLAE--TGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC----SHHHHHHHHHHHH--HCCHHHHHHHHHHHHC--
T ss_pred HHcCCCHHHHHHHHHHHHHhC----chhHHHHHHHHHh--CCCHHHHHHHHHHHHhcC
Confidence 999999999999999999994 3566666666544 467888777777666544
No 10
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.48 E-value=5.9e-06 Score=82.69 Aligned_cols=185 Identities=18% Similarity=0.166 Sum_probs=130.5
Q ss_pred CCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHH
Q 002870 534 CNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKV 613 (872)
Q Consensus 534 ~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i 613 (872)
.+......+++.|-+ .+...|..+ .-+|..+|..+.++.+++.+. ++++..|..++.+++ .. |+...+
T Consensus 11 ~~~~~~~~~i~~L~~------~~~~vr~~A-~~~L~~~~~~~~~~~L~~~l~-~~~~~vr~~a~~~L~--~~--~~~~~~ 78 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQD------DSYYVRRAA-AYALGKIGDERAVEPLIKALK-DEDAWVRRAAADALG--QI--GDERAV 78 (201)
T ss_dssp CCHHHHHHHHHHTTC------SCHHHHHHH-HHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHHHH--HH--CCGGGH
T ss_pred cCCcchHHHHHHhcC------CCHHHHHHH-HHHHHhcCChhHHHHHHHHHc-CCCHHHHHHHHHHHH--hh--CCHHHH
Confidence 345566777776522 233444433 223456777788899998885 567788887766554 33 455667
Q ss_pred HHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHH
Q 002870 614 QNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 693 (872)
Q Consensus 614 ~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~ 693 (872)
..|+..+.+ .+ +.+|..|+-+++-+ +++ +.++.+ ..++.+.++.||..++.+||-+ ++.++++.|.+
T Consensus 79 ~~L~~~l~d-~~--~~vr~~a~~aL~~~--~~~---~~~~~L-~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~ 145 (201)
T 3ltj_A 79 EPLIKALKD-ED--GWVRQSAAVALGQI--GDE---RAVEPL-IKALKDEDWFVRIAAAFALGEI----GDERAVEPLIK 145 (201)
T ss_dssp HHHHHHTTC-SS--HHHHHHHHHHHHHH--CCG---GGHHHH-HHHTTCSSHHHHHHHHHHHHHH----TCGGGHHHHHH
T ss_pred HHHHHHHcC-CC--HHHHHHHHHHHHHh--CcH---HHHHHH-HHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHH
Confidence 777777653 23 37999999999886 444 344444 4456788999999999999988 56789999999
Q ss_pred hhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhhccChhhHHHHHHHHhh
Q 002870 694 LSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGL 749 (872)
Q Consensus 694 l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~s~~~~d~~~~f~~~lAqGl 749 (872)
+.+|++..||..|+.++|-++ .++....|.++.+ ..++.++..+.-|++-
T Consensus 146 ~l~d~~~~vr~~A~~aL~~~~----~~~~~~~L~~~l~--d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 146 ALKDEDGWVRQSAADALGEIG----GERVRAAMEKLAE--TGTGFARKVAVNYLET 195 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC----SHHHHHHHHHHHH--HCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhC----chhHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 999999999999999999993 3556666666544 3677777777766653
No 11
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.43 E-value=7.7e-05 Score=83.14 Aligned_cols=274 Identities=14% Similarity=0.115 Sum_probs=176.8
Q ss_pred HhhhccCCCchhHHHHHHHHHHhhcCCCCC-h-----h-hHHHHHHhhcCCC-CHHHHHHHHHHHHHHhccCCC------
Q 002870 433 IDKYFHSTDNHVIAGALLGVGIVNCGIRND-C-----D-PALALLSEYVGRE-DACIRIGAIMGLGISYAGTQN------ 498 (872)
Q Consensus 433 l~~yL~s~~~~~k~GAllaLGli~~G~~~e-~-----d-~~~~lL~~~L~~~-~~~v~~gA~lGLGLay~Gt~~------ 498 (872)
+-..+.++++.++..|+.+|+-+-+...++ . . .++..|...+.++ ++.++..|+-.|+-+..++.+
T Consensus 25 l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 104 (450)
T 2jdq_A 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVI 104 (450)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 334456777788888888887653211111 0 0 2677777888877 789999999999887765431
Q ss_pred -HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCC-------HHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhh
Q 002870 499 -DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN-------EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLY 570 (872)
Q Consensus 499 -~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n-------~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~ 570 (872)
..+...|...+.++ +.+++..|+.+||-+.-.+.. ..++..++..|. . .. +..+.+.++-+++-+.
T Consensus 105 ~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~-~~-~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 105 QAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS--K-QN-RLTMTRNAVWALSNLC 178 (450)
T ss_dssp HTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTT--S-CC-CHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc--C-CC-CHHHHHHHHHHHHHHh
Confidence 24666777777654 456777889999987443210 013344444332 1 11 3456777777777665
Q ss_pred cCC---------hhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHH---------HHHHHHHhhcccCCCCccchh
Q 002870 571 LGK---------QESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL---------KVQNLLGHCAQHHEKGEAYQG 632 (872)
Q Consensus 571 ~G~---------~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~---------~i~~LL~~~~~~~~d~~~vrr 632 (872)
.+. ...++.+++.+.. +++-.+..++.+ +.+...+... .+..|++.+.+ .+ +.+|.
T Consensus 179 ~~~~~~~~~~~~~~~l~~L~~~l~~-~~~~v~~~a~~~--L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~--~~v~~ 252 (450)
T 2jdq_A 179 RGKSPPPEFAKVSPCLNVLSWLLFV-SDTDVLADACWA--LSYLSDGPNDKIQAVIDAGVCRRLVELLMH-ND--YKVVS 252 (450)
T ss_dssp CCSSSCCCGGGTGGGHHHHHHHTTC-CCHHHHHHHHHH--HHHHTSSSHHHHHHHHHTTTHHHHHHHTTC-SC--HHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHcc-CCHHHHHHHHHH--HHHHHCCCcHHHHHHHHcCcHHHHHHHHCC-Cc--hhHHH
Confidence 543 2356667766654 344445444433 4444444322 45566666643 22 27899
Q ss_pred hhHhHhhhhhhcchhhHh-----HHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-------hHHHHHHHHhhcCCch
Q 002870 633 PAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-------VNVMDTLSRLSHDTDS 700 (872)
Q Consensus 633 ~Avl~iglI~~~~~~g~e-----~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-------~~aid~L~~l~~D~d~ 700 (872)
.|+-+++-++.+.+...+ .+...+-.++++.++.+|..++.+||-++.|++. ..++..|.++..|++.
T Consensus 253 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~ 332 (450)
T 2jdq_A 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEF 332 (450)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 999999999887652111 2344455566778999999999999999887653 3566777788888999
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 002870 701 EVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 701 ~Vr~~AiiAlGlV~aGt~ 718 (872)
.||..|+.+++-+..+.+
T Consensus 333 ~v~~~a~~~L~~l~~~~~ 350 (450)
T 2jdq_A 333 RTRKEAAWAITNATSGGS 350 (450)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999998877643
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.30 E-value=7.7e-05 Score=83.12 Aligned_cols=295 Identities=15% Similarity=0.128 Sum_probs=188.7
Q ss_pred hhHHHHHHHhhhhcc--ccc------h--hhHHhHhhhccCC-CchhHHHHHHHHHHhhcCCCCCh-----hhHHHHHHh
Q 002870 409 HGKMSAAASLGMILL--WDV------D--SGLAQIDKYFHST-DNHVIAGALLGVGIVNCGIRNDC-----DPALALLSE 472 (872)
Q Consensus 409 ~~k~~A~aslGlI~~--~~~------~--~~l~~l~~yL~s~-~~~~k~GAllaLGli~~G~~~e~-----d~~~~lL~~ 472 (872)
..+..|+.+++-+.. ++. + ..+..|-..|.++ ++.++..|+-+|+.+..+..... ..++..|..
T Consensus 35 ~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 114 (450)
T 2jdq_A 35 EQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIE 114 (450)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHH
Confidence 356677777776532 221 1 3456666677776 78899999999998876431100 126777888
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccCCC-------HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCC-CC------HHH
Q 002870 473 YVGREDACIRIGAIMGLGISYAGTQN-------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGS-CN------EEV 538 (872)
Q Consensus 473 ~L~~~~~~v~~gA~lGLGLay~Gt~~-------~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs-~n------~~~ 538 (872)
.+.++++.+|..|+..||-+...+.. ..+...|...+.++ .+.++...|+.+||-+.-+. .. ..+
T Consensus 115 lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 193 (450)
T 2jdq_A 115 LLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPC 193 (450)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGG
T ss_pred HHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 88888999999999999987554311 13566677777642 24567778999999887654 11 235
Q ss_pred HHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChh---------hHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCC
Q 002870 539 AQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE---------SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGN 609 (872)
Q Consensus 539 ~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e---------~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn 609 (872)
+..+++.+.. . +..+.+.++-+++-+..+..+ .++.+++.+. .+++-.+..++.+ ++...+++
T Consensus 194 l~~L~~~l~~---~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~--L~~l~~~~ 265 (450)
T 2jdq_A 194 LNVLSWLLFV---S--DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM-HNDYKVVSPALRA--VGNIVTGD 265 (450)
T ss_dssp HHHHHHHTTC---C--CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT-CSCHHHHHHHHHH--HHHHTTSC
T ss_pred HHHHHHHHcc---C--CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC-CCchhHHHHHHHH--HHHHhhCC
Confidence 5666665421 1 234555555666655544433 3455666554 3445555555444 44555665
Q ss_pred HH---------HHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHh-----HHHHHHHHHhhcCChhHHhHHHHHH
Q 002870 610 VL---------KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLAL 675 (872)
Q Consensus 610 ~~---------~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e-----~~~~il~~L~~~~~~~VR~ga~lAL 675 (872)
.. .+..|++.+.+. + +.+|..|+.+|+-++.+.+...+ .+...+-.++++.++.||..++.+|
T Consensus 266 ~~~~~~~~~~~~l~~L~~ll~~~-~--~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L 342 (450)
T 2jdq_A 266 DIQTQVILNCSALQSLLHLLSSP-K--ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAI 342 (450)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCS-S--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHCccHHHHHHHHcCC-C--HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 43 445566666542 2 37999999999999876652111 2233444455678999999999999
Q ss_pred hhhccC-CCc-------hHHHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 002870 676 GLLCIS-NPK-------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGS 715 (872)
Q Consensus 676 GL~~ag-t~~-------~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~a 715 (872)
+-++.+ ++. ..++..|..+.++.+..|+..|+-+++-+..
T Consensus 343 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 343 TNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 988765 322 2356777888889999999999999887754
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.26 E-value=0.00012 Score=84.27 Aligned_cols=274 Identities=15% Similarity=0.208 Sum_probs=167.1
Q ss_pred hhHHHHHHHhhhhccccc---------hhhHHhHhhhccCCC-chhHHHHHHHHHHhhcCCCCChh-----hHHHHHHhh
Q 002870 409 HGKMSAAASLGMILLWDV---------DSGLAQIDKYFHSTD-NHVIAGALLGVGIVNCGIRNDCD-----PALALLSEY 473 (872)
Q Consensus 409 ~~k~~A~aslGlI~~~~~---------~~~l~~l~~yL~s~~-~~~k~GAllaLGli~~G~~~e~d-----~~~~lL~~~ 473 (872)
..+..|+.+++-+..++. ..++..|-.+|.+++ +.++..|+.+|+-+..+...... .++..|...
T Consensus 89 ~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 168 (528)
T 4b8j_A 89 NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168 (528)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHH
Confidence 467777777777655443 124566667777665 88999999999998875321100 256677888
Q ss_pred cCCCCHHHHHHHHHHHHHHhccCCC--H-----HHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCH--H----HHH
Q 002870 474 VGREDACIRIGAIMGLGISYAGTQN--D-----QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE--E----VAQ 540 (872)
Q Consensus 474 L~~~~~~v~~gA~lGLGLay~Gt~~--~-----~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~--~----~~e 540 (872)
+.+++..++..|+-+||-+...+.. . .++..|+..+.++ .+.++...|+.+|+-+..+..+. . ++.
T Consensus 169 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~ 247 (528)
T 4b8j_A 169 LGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALP 247 (528)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 8888899999999999987543221 1 1344555566322 24566678888888876654221 1 333
Q ss_pred HHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhh
Q 002870 541 AIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHC 620 (872)
Q Consensus 541 ~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~ 620 (872)
.+++.|. .. +..+...++.+|+-+..+..+..+.+++ .| .+..|++.+
T Consensus 248 ~L~~lL~----~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~------------------------~g---~v~~Lv~lL 295 (528)
T 4b8j_A 248 ALARLIH----SN-DEEVLTDACWALSYLSDGTNDKIQAVIE------------------------AG---VCPRLVELL 295 (528)
T ss_dssp HHHHHTT----CC-CHHHHHHHHHHHHHHTSSCHHHHHHHHH------------------------TT---CHHHHHHHT
T ss_pred HHHHHHC----CC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH------------------------cC---HHHHHHHHH
Confidence 3333321 11 2234444444444444333332222211 11 234455555
Q ss_pred cccCCCCccchhhhHhHhhhhhhcchhhHh-----HHHHHHHHHhhcC-ChhHHhHHHHHHhhhccCCCch-------HH
Q 002870 621 AQHHEKGEAYQGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYG-EQNIRRAVPLALGLLCISNPKV-------NV 687 (872)
Q Consensus 621 ~~~~~d~~~vrr~Avl~iglI~~~~~~g~e-----~~~~il~~L~~~~-~~~VR~ga~lALGL~~agt~~~-------~a 687 (872)
.+. ++ .++..|+-+|+-++.+.+...+ .+...+-.++++. ++.||..++.+|+-++++++.. .+
T Consensus 296 ~~~-~~--~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~ 372 (528)
T 4b8j_A 296 LHP-SP--SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI 372 (528)
T ss_dssp TCS-CH--HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTC
T ss_pred cCC-Ch--hHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
Confidence 432 22 6888888888888876652211 1233344445566 8999999999999998876532 34
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 002870 688 MDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 688 id~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~ 718 (872)
+..|..+..+.+..|+..|+.+++-+..+.+
T Consensus 373 i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~ 403 (528)
T 4b8j_A 373 IGPLVNLLQTAEFDIKKEAAWAISNATSGGS 403 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC
Confidence 5666777777888999999999998877633
No 14
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.25 E-value=0.00013 Score=85.95 Aligned_cols=299 Identities=14% Similarity=0.052 Sum_probs=164.3
Q ss_pred chhHHHHHHHhhhhccccchhh-HHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChh--hHHHHHHhhcCCCCHHHHHH
Q 002870 408 EHGKMSAAASLGMILLWDVDSG-LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCD--PALALLSEYVGREDACIRIG 484 (872)
Q Consensus 408 ~~~k~~A~aslGlI~~~~~~~~-l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d--~~~~lL~~~L~~~~~~v~~g 484 (872)
+..+..|.-++|-|...+.-+. ...+.+.+.+.++++|-.|+++++-++....+..+ ..+..|...|.++++.++.+
T Consensus 100 ~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~ 179 (591)
T 2vgl_B 100 PLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVAN 179 (591)
T ss_dssp HHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHH
Confidence 4567788888888875444333 23466777889999999999999998875433222 36688889999999999999
Q ss_pred HHHHHHHHhccCCC-------HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCch
Q 002870 485 AIMGLGISYAGTQN-------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEP 557 (872)
Q Consensus 485 A~lGLGLay~Gt~~-------~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~ 557 (872)
|+.+|+-+.....+ ...+..|+..+.+.+.-..+ ...=.++ .++..+++..+.++..+...-.. .+.
T Consensus 180 A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~--~il~~l~--~l~~~~~~~~~~~l~~l~~~l~~--~~~ 253 (591)
T 2vgl_B 180 AVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQI--FILDCLS--NYNPKDDREAQSICERVTPRLSH--ANS 253 (591)
T ss_dssp HHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHH--HHHHHHH--TSCCCSHHHHHHHHHHHTTCSCS--STT
T ss_pred HHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHH--HHHHHHH--HhCCCChHHHHHHHHHHHHHHcC--CCh
Confidence 99999987554332 13466666666544211221 1222222 33455555666777766543211 123
Q ss_pred hHhHHHHHHHhhhcC-----ChhhHHHHH----H---HHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCC
Q 002870 558 LTRLIPLGLGLLYLG-----KQESVEATA----E---VSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHE 625 (872)
Q Consensus 558 ~~r~~~lglgLl~~G-----~~e~a~~ll----~---~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~ 625 (872)
-+++.++. .+..++ .++..+.++ . .+.. .++-.||.+.-+++.--.. +...++..+.......+
T Consensus 254 ~V~~ea~~-~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~--~p~~~~~~~~~~~~~~~ 329 (591)
T 2vgl_B 254 AVVLSAVK-VLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQK--RPEILKQEIKVFFVKYN 329 (591)
T ss_dssp HHHHHHHH-HHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH--CCSTTTTCTTTTSCCTT
T ss_pred HHHHHHHH-HHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh--ChHHHHHHHHhheeccC
Confidence 33333321 233332 123332211 1 2322 5667777666554432211 11112111111000011
Q ss_pred CCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCC--chHHHHHHHHhhcCCchHHH
Q 002870 626 KGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP--KVNVMDTLSRLSHDTDSEVA 703 (872)
Q Consensus 626 d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~--~~~aid~L~~l~~D~d~~Vr 703 (872)
|+..+|+-++--+.-+. ++...+.+.+-+..++++.|+.+|..++.++|.++...+ ...+++.|..+..|.+++|+
T Consensus 330 d~~~Ir~~al~~L~~l~--~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~ 407 (591)
T 2vgl_B 330 DPIYVKLEKLDIMIRLA--SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVV 407 (591)
T ss_dssp SCHHHHHHHHHHHHHTC--CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred ChHHHHHHHHHHHHHHC--ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHH
Confidence 21256665554444332 331112222223334445677888888888887765544 25667777777788888888
Q ss_pred HHHHHHHHHHcCCCC
Q 002870 704 MAAVISLGLIGSGTN 718 (872)
Q Consensus 704 ~~AiiAlGlV~aGt~ 718 (872)
.-++.+++-+..+..
T Consensus 408 ~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 408 QEAIVVIRDIFRKYP 422 (591)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCc
Confidence 777777777655444
No 15
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.23 E-value=0.00014 Score=85.69 Aligned_cols=268 Identities=13% Similarity=0.082 Sum_probs=170.0
Q ss_pred HHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC----HHHHHHH
Q 002870 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN----DQIRHKL 505 (872)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~----~~i~e~L 505 (872)
.+.|.+-+.++++++++.|+-++|-+.. ..-.+.+...+...+.++++.+|..|+++|+-+|-...+ .++.+.|
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l 165 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRV--DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSL 165 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHH
Confidence 3455566778899999999999998752 111123444466778899999999999999998875433 1366778
Q ss_pred HHHhcCCCCchHHHHHHHHHHHhHhcCCCC-------HHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCCh--hh
Q 002870 506 STILNDAKSPLDVIAFSAISLGLIYVGSCN-------EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ--ES 576 (872)
Q Consensus 506 ~~~L~d~~~~~e~~~~AaLALGLi~lGs~n-------~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~--e~ 576 (872)
...+.|+ +..++..|+-+|+-+.--..+ ...+..++..+.+ .++|.+...+- .|..++.. +.
T Consensus 166 ~~lL~d~--d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~------~~~~~q~~il~-~l~~l~~~~~~~ 236 (591)
T 2vgl_B 166 RDLIADS--NPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE------CTEWGQIFILD-CLSNYNPKDDRE 236 (591)
T ss_dssp HHTTSCS--CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH------CCHHHHHHHHH-HHHTSCCCSHHH
T ss_pred HHHhCCC--ChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC------CCchHHHHHHH-HHHHhCCCChHH
Confidence 8888765 456777888999987443321 2446666665532 24566654433 34455543 24
Q ss_pred HHHHHHHHh---hhhhhhhhhhhHHHHHHhhhcC---CCHHHHH--------HHHHhhcccCCCCccchhhhHhHhhhhh
Q 002870 577 VEATAEVSK---TFNEKIRKYCDMTLLSCAYAGT---GNVLKVQ--------NLLGHCAQHHEKGEAYQGPAVLGIAMVA 642 (872)
Q Consensus 577 a~~ll~~L~---~~~~~i~r~~~~~~~~lAyaGT---Gn~~~i~--------~LL~~~~~~~~d~~~vrr~Avl~iglI~ 642 (872)
...+++.+. ...++-.++.++-++ .+.+. .+...++ .|+... + .+ +++|..|+-+++.+.
T Consensus 237 ~~~~l~~l~~~l~~~~~~V~~ea~~~i--~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~-~d--~~vr~~aL~~l~~i~ 310 (591)
T 2vgl_B 237 AQSICERVTPRLSHANSAVVLSAVKVL--MKFLELLPKDSDYYNMLLKKLAPPLVTLL-S-GE--PEVQYVALRNINLIV 310 (591)
T ss_dssp HHHHHHHHTTCSCSSTTHHHHHHHHHH--HHSCCSCCBTTBSHHHHHHHTHHHHHHHT-T-SC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHH--HHHhhccCCCHHHHHHHHHHHHHHHHHHh-c-CC--ccHHHHHHHHHHHHH
Confidence 455555543 334566666555443 33321 1222222 223322 2 12 379999999999998
Q ss_pred hcchhhHhHHHHHHHHHhh--cCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCC
Q 002870 643 MAEELGLEMAIRSLEHLLQ--YGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGT 717 (872)
Q Consensus 643 ~~~~~g~e~~~~il~~L~~--~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt 717 (872)
...| +.+...+..+.. +.++.||.-+.-.++-++-.++-..++..|..+..|.|..+|..++-++|.+....
T Consensus 311 ~~~p---~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~ 384 (591)
T 2vgl_B 311 QKRP---EILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV 384 (591)
T ss_dssp HHCC---STTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HhCh---HHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 7766 322222221111 33478998888777766655555678888899999999999999999999887654
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.19 E-value=6.1e-05 Score=86.94 Aligned_cols=275 Identities=16% Similarity=0.167 Sum_probs=173.3
Q ss_pred HHhHhhhccCCCchhHHHHHHHHHHhhcCCCCCh------hhHHHHHHhhcCCC-CHHHHHHHHHHHHHHhccCCC----
Q 002870 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC------DPALALLSEYVGRE-DACIRIGAIMGLGISYAGTQN---- 498 (872)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~------d~~~~lL~~~L~~~-~~~v~~gA~lGLGLay~Gt~~---- 498 (872)
+..|-..|.++++.++..|+.+|+-+-....++. ..++..|...|.++ ++.++..|+.+|+-+..++..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4445556677777888888888886644321110 01456777788876 788999999999887665421
Q ss_pred ---HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCC-H------HHHHHHHHHHhhcCccccCchhHhHHHHHHHh
Q 002870 499 ---DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN-E------EVAQAIIFALMDRSESELGEPLTRLIPLGLGL 568 (872)
Q Consensus 499 ---~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n-~------~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgL 568 (872)
..+...|...+.++ +.++...|+.+||-+...+.. . .++..++..|.. . ...+.+.++-+|+-
T Consensus 169 ~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~-~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS----N-KPSLIRTATWTLSN 241 (530)
T ss_dssp HHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS----C-CHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc----C-CHHHHHHHHHHHHH
Confidence 12355666666644 456677888888887533210 0 123344443321 1 34566666677776
Q ss_pred hhcCC-h--------hhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHH---------HHHHHHHhhcccCCCCccc
Q 002870 569 LYLGK-Q--------ESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL---------KVQNLLGHCAQHHEKGEAY 630 (872)
Q Consensus 569 l~~G~-~--------e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~---------~i~~LL~~~~~~~~d~~~v 630 (872)
+..+. + ..++.+++.+.. +++-.+..++.+ +.+...++.. .+..|++.+.+ .+ +.+
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~--L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~-~~--~~v 315 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYS-MDTETLVDACWA--ISYLSDGPQEAIQAVIDVRIPKRLVELLSH-ES--TLV 315 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTC-CCHHHHHHHHHH--HHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-SC--HHH
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcC-CCHHHHHHHHHH--HHHHhCCCHHHHHHHHhcCcHHHHHHHHCC-CC--hhh
Confidence 66554 1 235556665543 345555545444 4444455433 23455666543 22 278
Q ss_pred hhhhHhHhhhhhhcchhhHh-----HHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-------hHHHHHHHHhhcCC
Q 002870 631 QGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-------VNVMDTLSRLSHDT 698 (872)
Q Consensus 631 rr~Avl~iglI~~~~~~g~e-----~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-------~~aid~L~~l~~D~ 698 (872)
+..|+-+|+-++.+++...+ .+...+-.++++.++.+|..++.+|+-++.+++. ..++..|..+..++
T Consensus 316 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 395 (530)
T 1wa5_B 316 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 395 (530)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC
Confidence 89999999999887652211 2333445566778999999999999999887654 23566777778888
Q ss_pred chHHHHHHHHHHHHHcCCC
Q 002870 699 DSEVAMAAVISLGLIGSGT 717 (872)
Q Consensus 699 d~~Vr~~AiiAlGlV~aGt 717 (872)
+..|+..|+.+++-+..+.
T Consensus 396 ~~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 396 EYKTKKEACWAISNASSGG 414 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcC
Confidence 9999999999999887653
No 17
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.19 E-value=7.6e-05 Score=88.60 Aligned_cols=275 Identities=13% Similarity=0.111 Sum_probs=167.5
Q ss_pred HHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC--HHHHHHHHH
Q 002870 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN--DQIRHKLST 507 (872)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~--~~i~e~L~~ 507 (872)
.+.|.+-|.++++++++-|+-++|.+... .-.+++...+...+.++++.+|..|+++++-+|.+..+ +.+.+.|.+
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~~~--~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~ 186 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMGSS--EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKN 186 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTT
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 34566667889999999999999998631 11123456667778889999999999999999876432 133344444
Q ss_pred HhcCCCCchHHHHHHHHHHHhHhcCCCCHHH-------HHHHHHHHhhc---C-ccc-----cCchhHhHHHHHHHhhhc
Q 002870 508 ILNDAKSPLDVIAFSAISLGLIYVGSCNEEV-------AQAIIFALMDR---S-ESE-----LGEPLTRLIPLGLGLLYL 571 (872)
Q Consensus 508 ~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~-------~e~ll~~L~~~---~-~~~-----l~e~~~r~~~lglgLl~~ 571 (872)
.+.|. +..++..|.-+|+-+ +..+++. +..++..|... . ..+ ..++|.+...+- .|..+
T Consensus 187 lL~D~--d~~V~~~Al~~L~~i--~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~-~L~~l 261 (618)
T 1w63_A 187 LLNEK--NHGVLHTSVVLLTEM--CERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILR-LLRIL 261 (618)
T ss_dssp STTCC--CHHHHHHHHHHHHHH--CCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHH-HHHHH
T ss_pred HhCCC--CHhHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHH-HHHHh
Confidence 45554 456666777888876 4444432 23334333210 0 000 136777655432 23334
Q ss_pred CCh--hhHHHHHHHHhhh---------hhhhhhhhhHHHHHHhhhcCCCH---HHHHHHHHhhcccCCCCccchhhhHhH
Q 002870 572 GKQ--ESVEATAEVSKTF---------NEKIRKYCDMTLLSCAYAGTGNV---LKVQNLLGHCAQHHEKGEAYQGPAVLG 637 (872)
Q Consensus 572 G~~--e~a~~ll~~L~~~---------~~~i~r~~~~~~~~lAyaGTGn~---~~i~~LL~~~~~~~~d~~~vrr~Avl~ 637 (872)
++. +..+.+++.|... .++-..+.++-+ +...++... .+++.|..++.+. + +++|..|+-+
T Consensus 262 ~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~--i~~l~~~~~l~~~a~~~L~~~L~~~-d--~~vr~~aL~~ 336 (618)
T 1w63_A 262 GRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLT--IMDIKSESGLRVLAINILGRFLLNN-D--KNIRYVALTS 336 (618)
T ss_dssp TTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHH--HHHSCCCHHHHHHHHHHHHHHHTCS-S--TTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHhCC-C--CchHHHHHHH
Confidence 443 2333333333221 112223333222 222333221 3566666666532 2 3899999999
Q ss_pred hhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 002870 638 IAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716 (872)
Q Consensus 638 iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aG 716 (872)
++.+....|..-......+-..+.+.|+.||.-+.=.|.-++-.++-..+++.|..+..+.+.++|..++.++|-+...
T Consensus 337 L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 337 LLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999887762111112223333467789999988888877766666677889999999999999999999999988764
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.18 E-value=0.00012 Score=84.46 Aligned_cols=293 Identities=14% Similarity=0.122 Sum_probs=183.7
Q ss_pred hhHHHHHHHhhhhcccc--c-------hhhHHhHhhhccCC-CchhHHHHHHHHHHhhcCCCCChh-----hHHHHHHhh
Q 002870 409 HGKMSAAASLGMILLWD--V-------DSGLAQIDKYFHST-DNHVIAGALLGVGIVNCGIRNDCD-----PALALLSEY 473 (872)
Q Consensus 409 ~~k~~A~aslGlI~~~~--~-------~~~l~~l~~yL~s~-~~~~k~GAllaLGli~~G~~~e~d-----~~~~lL~~~ 473 (872)
..+..|+.+++-+.... . ..++..|-.+|.++ ++.++.-|+.+|+-+..+...... .++..|...
T Consensus 102 ~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 181 (530)
T 1wa5_B 102 QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQL 181 (530)
T ss_dssp HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHH
Confidence 45677777777664432 1 13466677777776 788999999999988765321000 134556666
Q ss_pred cCCCCHHHHHHHHHHHHHHhccCCC-------HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCC-CC--H----HHH
Q 002870 474 VGREDACIRIGAIMGLGISYAGTQN-------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGS-CN--E----EVA 539 (872)
Q Consensus 474 L~~~~~~v~~gA~lGLGLay~Gt~~-------~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs-~n--~----~~~ 539 (872)
+.+++..++..|+-+||-+...+.. ..+...|...+.+. +.++...|+.+|+-+..+. .. . .++
T Consensus 182 L~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l 259 (530)
T 1wa5_B 182 LYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 259 (530)
T ss_dssp HHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGH
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHH
Confidence 7777889999999999987654311 13556677777663 4566678889999887664 21 1 234
Q ss_pred HHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhH---------HHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCH
Q 002870 540 QAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV---------EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV 610 (872)
Q Consensus 540 e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a---------~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~ 610 (872)
..|+..|. + . ...+...++.+|+-+..+..+.. +.+++.+. .+++-.+..++.+ ++...+|+.
T Consensus 260 ~~L~~lL~--~-~--d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~-~~~~~v~~~a~~~--L~~l~~~~~ 331 (530)
T 1wa5_B 260 PTLAKLIY--S-M--DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTLVQTPALRA--VGNIVTGND 331 (530)
T ss_dssp HHHHHHTT--C-C--CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHH--HHHHTTSCH
T ss_pred HHHHHHHc--C-C--CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC-CCChhhHHHHHHH--HHHHHcCCH
Confidence 44554331 1 1 23455566666776666655433 34444444 3445555555544 444555654
Q ss_pred H---------HHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHh-----HHHHHHHHHhhcCChhHHhHHHHHHh
Q 002870 611 L---------KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLALG 676 (872)
Q Consensus 611 ~---------~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e-----~~~~il~~L~~~~~~~VR~ga~lALG 676 (872)
. .+..|++.+.+. + ..+|..|+.+|+-++.+.+.... .+...+-.++++.++.+|..++.||+
T Consensus 332 ~~~~~~~~~~~l~~L~~lL~~~-~--~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~ 408 (530)
T 1wa5_B 332 LQTQVVINAGVLPALRLLLSSP-K--ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 408 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-C--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHHcCC-C--HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3 334455565443 2 27899999999999876552111 12223334456789999999999999
Q ss_pred hhccC-CC---------chHHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 002870 677 LLCIS-NP---------KVNVMDTLSRLSHDTDSEVAMAAVISLGLIG 714 (872)
Q Consensus 677 L~~ag-t~---------~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~ 714 (872)
-++.+ ++ ...++..|..+..+.+..|+..|+-+++-+.
T Consensus 409 ~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 456 (530)
T ss_dssp HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 88764 33 1236777888888899999999888887664
No 19
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.10 E-value=0.033 Score=67.91 Aligned_cols=301 Identities=13% Similarity=0.074 Sum_probs=161.1
Q ss_pred chh-HHHHHHHhhhhccccchh----hHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCC----hhhHHHHHHhhcCCCC
Q 002870 408 EHG-KMSAAASLGMILLWDVDS----GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND----CDPALALLSEYVGRED 478 (872)
Q Consensus 408 ~~~-k~~A~aslGlI~~~~~~~----~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e----~d~~~~lL~~~L~~~~ 478 (872)
+|. +..|..++|.+-....+. .+..+.+++.+++..+|.+|+.++|.+..|.... .+.++..|...+.+++
T Consensus 334 ~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~ 413 (852)
T 4fdd_A 334 DWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK 413 (852)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSS
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCC
Confidence 453 556666666544322222 3455666677788999999999999998765321 1346677778888999
Q ss_pred HHHHHHHHHHHHHHhccC---CC----HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCC------HHHHHHHHHH
Q 002870 479 ACIRIGAIMGLGISYAGT---QN----DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN------EEVAQAIIFA 545 (872)
Q Consensus 479 ~~v~~gA~lGLGLay~Gt---~~----~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n------~~~~e~ll~~ 545 (872)
+.+|..|+..||-..... .. ..+...|...+.|+ +.+++..|+.+|+-+.-+.+. +++.+.++..
T Consensus 414 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~ 491 (852)
T 4fdd_A 414 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFA 491 (852)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHH
Confidence 999999999998654321 11 24555555555555 456777889999887543332 2344444444
Q ss_pred HhhcCccccCchhHhHHHHHHHhhh------cCChhhHHHHHHHHh----h--hhhhhhh-hhhHHHHHHhhhcCCCHH-
Q 002870 546 LMDRSESELGEPLTRLIPLGLGLLY------LGKQESVEATAEVSK----T--FNEKIRK-YCDMTLLSCAYAGTGNVL- 611 (872)
Q Consensus 546 L~~~~~~~l~e~~~r~~~lglgLl~------~G~~e~a~~ll~~L~----~--~~~~i~r-~~~~~~~~lAyaGTGn~~- 611 (872)
+-.. +.+..+.+.-+++-+. +.+.+-.+.++..+. . ++++-.+ ...++...+.-.|.+-..
T Consensus 492 l~~~-----~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~ 566 (852)
T 4fdd_A 492 FSKY-----QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 566 (852)
T ss_dssp HHHC-----CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHh-----ChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 3211 2222222333333322 223333333333332 1 1222221 111222222223443221
Q ss_pred ---HHHHHHHhhccc-------------C-CCCccchhhhHhHhhhhhh--cchhhH----hHHHHHHHHHhhcCChhHH
Q 002870 612 ---KVQNLLGHCAQH-------------H-EKGEAYQGPAVLGIAMVAM--AEELGL----EMAIRSLEHLLQYGEQNIR 668 (872)
Q Consensus 612 ---~i~~LL~~~~~~-------------~-~d~~~vrr~Avl~iglI~~--~~~~g~----e~~~~il~~L~~~~~~~VR 668 (872)
.+..++..+.+. . +++.+++..++-.++-|.- |..... ..+..++-..+++.++.||
T Consensus 567 ~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr 646 (852)
T 4fdd_A 567 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVR 646 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHH
Confidence 222222222110 0 1112455555555555442 322110 2344555555677779999
Q ss_pred hHHHHHHhhhccCCCc------hHHHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 002870 669 RAVPLALGLLCISNPK------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGS 715 (872)
Q Consensus 669 ~ga~lALGL~~agt~~------~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~a 715 (872)
..+..++|-++.+.+. ..++..|.+...+.+..||.+|+.++|-+..
T Consensus 647 ~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~ 699 (852)
T 4fdd_A 647 QSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISI 699 (852)
T ss_dssp HHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHH
Confidence 9999999977543332 2345555566666677899999999998644
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.03 E-value=0.0003 Score=80.88 Aligned_cols=288 Identities=15% Similarity=0.125 Sum_probs=168.7
Q ss_pred hhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCC-hh-----hHHHHHHhhcCCCC-HHHHHHHHHHHHHHhccCCCH-
Q 002870 428 SGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND-CD-----PALALLSEYVGRED-ACIRIGAIMGLGISYAGTQND- 499 (872)
Q Consensus 428 ~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e-~d-----~~~~lL~~~L~~~~-~~v~~gA~lGLGLay~Gt~~~- 499 (872)
+.+..|-..|.++++.++..|+.+|+-+-++..++ .+ .++..|...|.+++ +.++..|+.+|+-+..++...
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 35777777788888888989999988876655422 11 14556667777765 788888888888877654321
Q ss_pred ------HHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHH-----HHHhhcC-ccccCchhHhHHHHHHH
Q 002870 500 ------QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAII-----FALMDRS-ESELGEPLTRLIPLGLG 567 (872)
Q Consensus 500 ------~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll-----~~L~~~~-~~~l~e~~~r~~~lglg 567 (872)
.++..|...+.++ +.+++..|+.+||-+.. .+++..+.++ ..|+..- ... +..+.+.++-+++
T Consensus 154 ~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~--~~~~~~~~i~~~g~l~~Ll~lL~~~~-~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAG--DSPKCRDLVLANGALLPLLAQLNEHT-KLSMLRNATWTLS 228 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHH--TCHHHHHHHHHTTCHHHHHHTCCTTC-CHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhC--CChhhHHHHHHCCcHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 2455566666553 78888888888888743 2222222111 1111110 010 1223333333333
Q ss_pred hhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchh
Q 002870 568 LLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEEL 647 (872)
Q Consensus 568 Ll~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~ 647 (872)
-+..+.+..... . ...++..|++.+.+. + +.++..++.+++-++.+.+.
T Consensus 229 ~L~~~~~~~~~~------------------~----------~~~~l~~L~~lL~~~-~--~~v~~~a~~aL~~l~~~~~~ 277 (528)
T 4b8j_A 229 NFCRGKPQPSFE------------------Q----------TRPALPALARLIHSN-D--EEVLTDACWALSYLSDGTND 277 (528)
T ss_dssp HHHCSSSCCCHH------------------H----------HTTHHHHHHHHTTCC-C--HHHHHHHHHHHHHHTSSCHH
T ss_pred HHHcCCCCCcHH------------------H----------HHHHHHHHHHHHCCC-C--HHHHHHHHHHHHHHHcCCHH
Confidence 332221110000 0 012344555555332 2 26777888888887766542
Q ss_pred hHhH-----HHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-------hHHHHHHHHhhcCC-chHHHHHHHHHHHHHc
Q 002870 648 GLEM-----AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-------VNVMDTLSRLSHDT-DSEVAMAAVISLGLIG 714 (872)
Q Consensus 648 g~e~-----~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-------~~aid~L~~l~~D~-d~~Vr~~AiiAlGlV~ 714 (872)
..+. +...+-.++.+.++.+|..++.+||-++.+++. ..++..|..+.+++ +..|+..|+.+++-+.
T Consensus 278 ~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~ 357 (528)
T 4b8j_A 278 KIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNIT 357 (528)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 1111 223444556777899999999999999887763 34577788888888 8999999999999998
Q ss_pred CCCCch-------HHHHHHHHhhhhhccChhhHHHHHHHHhhhhcC
Q 002870 715 SGTNNA-------RIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMG 753 (872)
Q Consensus 715 aGt~n~-------rv~~~lr~l~s~~~~d~~~~f~~~lAqGll~~G 753 (872)
.|..+. .+...|-++.+ +.++..+..+..|+|-+..+
T Consensus 358 ~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 358 AGNKDQIQAVINAGIIGPLVNLLQ--TAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHH--HSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHcC
Confidence 875431 11112222211 24677777777777766555
No 21
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.00 E-value=0.00067 Score=69.04 Aligned_cols=213 Identities=19% Similarity=0.182 Sum_probs=127.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC-------HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHH-
Q 002870 467 LALLSEYVGREDACIRIGAIMGLGISYAGTQN-------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEV- 538 (872)
Q Consensus 467 ~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~-------~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~- 538 (872)
+..|...|.++++.++..|+..|+-...+..+ ..+.+.|...+.++ +.++...|+.+|+-+.. .+++.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~--~~~~~~ 79 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIAS--GPDEAI 79 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT--SCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHc--CChHHH
Confidence 44556666666677777777777665544320 13556666777654 35666678888887743 22332
Q ss_pred --------HHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCH
Q 002870 539 --------AQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV 610 (872)
Q Consensus 539 --------~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~ 610 (872)
+..++..|. .+ +..+.+.++.+++-+..+.++..+.+++ .
T Consensus 80 ~~~~~~~~i~~l~~ll~----~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~------------------------~--- 127 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLT----ST-DSEVQKEAARALANIASGPDEAIKAIVD------------------------A--- 127 (252)
T ss_dssp HHHHHTTHHHHHHHHTT----CS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH------------------------T---
T ss_pred HHHHHCCCHHHHHHHHc----CC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH------------------------C---
Confidence 333333321 11 2344445444455444333332222111 0
Q ss_pred HHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhH-----hHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-
Q 002870 611 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGL-----EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK- 684 (872)
Q Consensus 611 ~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~-----e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~- 684 (872)
..+..|++.+.+. + +.++..++-+++-++.+.+... ..+...+-.++++.++.+|..++.+|+-++.+++.
T Consensus 128 ~~i~~L~~~l~~~-~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 128 GGVEVLVKLLTST-D--SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp THHHHHHHHTTCS-C--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred CCHHHHHHHHcCC-C--HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1345566665432 2 2688888888888877655211 11444555666788899999999999999876554
Q ss_pred ------hHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 002870 685 ------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 685 ------~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~ 718 (872)
..+++.|.++.++++..|+..|+.+++-+.....
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 2357788888899999999999888887765443
No 22
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.98 E-value=0.0012 Score=76.37 Aligned_cols=276 Identities=14% Similarity=0.132 Sum_probs=166.8
Q ss_pred HhhhccCCCchhHHHHHHHHHHhhcCCCCC-hhh-----HHHHHHhhcCC-CCHHHHHHHHHHHHHHhccCCCH------
Q 002870 433 IDKYFHSTDNHVIAGALLGVGIVNCGIRND-CDP-----ALALLSEYVGR-EDACIRIGAIMGLGISYAGTQND------ 499 (872)
Q Consensus 433 l~~yL~s~~~~~k~GAllaLGli~~G~~~e-~d~-----~~~lL~~~L~~-~~~~v~~gA~lGLGLay~Gt~~~------ 499 (872)
|-+.+.+++...+.-|+-++--+-+...+. .+. ++..|...|.. +++.+|..|+-+|+-+..|+.+.
T Consensus 62 ~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~ 141 (510)
T 3ul1_B 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 141 (510)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 444556666666666666665333222221 111 34556677764 45789999999999877765421
Q ss_pred -HHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCC-HH------HHHHHHHHHhhcCccccCchhHhHHHHHHHhhhc
Q 002870 500 -QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN-EE------VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYL 571 (872)
Q Consensus 500 -~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n-~~------~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~ 571 (872)
..+..|...|.++ +.+++..|+.+||-+-..+.. .+ ++..++..|.............|.++..++-+..
T Consensus 142 ~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 142 GGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp TTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 1345566666654 457777899999988432211 11 1334444332111111123455666666666655
Q ss_pred CChh-----hH----HHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHH---------HHHHhhcccCCCCccchhh
Q 002870 572 GKQE-----SV----EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQ---------NLLGHCAQHHEKGEAYQGP 633 (872)
Q Consensus 572 G~~e-----~a----~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~---------~LL~~~~~~~~d~~~vrr~ 633 (872)
++.. .+ +.+...+ ..+++-.+..++ .+++|...++...++ .|...+.+. + ..++..
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~--~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~--~~v~~~ 293 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSC--WAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-E--LPIVTP 293 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHH--HHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-C--HHHHHH
T ss_pred cccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHH--HHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-C--hhhhhH
Confidence 5432 12 2233333 334454554444 345666666654433 345555432 2 278899
Q ss_pred hHhHhhhhhhcchhhHhHHHHH--------HHHHhhcCChhHHhHHHHHHhhhccCCCch-------HHHHHHHHhhcCC
Q 002870 634 AVLGIAMVAMAEELGLEMAIRS--------LEHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSRLSHDT 698 (872)
Q Consensus 634 Avl~iglI~~~~~~g~e~~~~i--------l~~L~~~~~~~VR~ga~lALGL~~agt~~~-------~aid~L~~l~~D~ 698 (872)
++-+++-++.+++ ++...+ +..|+++.++.||..++.+|+-++++++.. .++..|..+..+.
T Consensus 294 al~aL~nl~~~~~---~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~ 370 (510)
T 3ul1_B 294 ALRAIGNIVTGTD---EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 370 (510)
T ss_dssp HHHHHHHHTTSCH---HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHhhcCCH---HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC
Confidence 9999999988877 333333 334667889999999999999999887653 3566778888999
Q ss_pred chHHHHHHHHHHHHHcCCCCc
Q 002870 699 DSEVAMAAVISLGLIGSGTNN 719 (872)
Q Consensus 699 d~~Vr~~AiiAlGlV~aGt~n 719 (872)
+..|+..|..|++-+..+.+.
T Consensus 371 ~~~v~~~Aa~aL~Nl~~~~~~ 391 (510)
T 3ul1_B 371 DFKTQKEAAWAITNYTSGGTV 391 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHHHHccCCH
Confidence 999999999999987776554
No 23
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.88 E-value=0.00038 Score=82.59 Aligned_cols=309 Identities=16% Similarity=0.057 Sum_probs=168.2
Q ss_pred cchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCC-hhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHH
Q 002870 425 DVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND-CDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRH 503 (872)
Q Consensus 425 ~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e-~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e 503 (872)
+...+...+-+++.+++...|--..+++....... .| .-.+...|..-+.++++.+|.-|+-+||-+. .+++.+
T Consensus 67 d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~----~~~~~~ 141 (618)
T 1w63_A 67 PAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDER-QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG----SSEMCR 141 (618)
T ss_dssp CCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----CHHHHH
T ss_pred CCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----CHHHHH
Confidence 34444444445555555444444444444432211 11 0124456666788999999999999999864 356655
Q ss_pred HHH----HHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHH-HHHhhhcCChh---
Q 002870 504 KLS----TILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPL-GLGLLYLGKQE--- 575 (872)
Q Consensus 504 ~L~----~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~l-glgLl~~G~~e--- 575 (872)
.+. ..+.|+ +..+...|+++++-++-+. ++.++.++..+...-. + .++.++..++ +++-+.-..++
T Consensus 142 ~l~~~l~~~L~~~--~~~VRk~A~~al~~l~~~~--p~~v~~~~~~l~~lL~-D-~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 142 DLAGEVEKLLKTS--NSYLRKKAALCAVHVIRKV--PELMEMFLPATKNLLN-E-KNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHC--GGGGGGGGGGTTTSTT-C-CCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHC--hHHHHHHHHHHHHHhC-C-CCHhHHHHHHHHHHHHHHhChHHHH
Confidence 444 444565 4577789999999998754 4455554443322211 1 2344444442 23322211122
Q ss_pred ----hHHHHHHHHhh--------------hhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcc----c-CCC--Cccc
Q 002870 576 ----SVEATAEVSKT--------------FNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQ----H-HEK--GEAY 630 (872)
Q Consensus 576 ----~a~~ll~~L~~--------------~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~----~-~~d--~~~v 630 (872)
-++.+++.|.. ..+|+.+.. +...++..+..+....+++++++.. . ... ...|
T Consensus 216 ~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~--il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 216 HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR--ILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH--HHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 13344554443 234555432 3345556666665443332222211 0 000 0023
Q ss_pred hhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHH----HHHHHhhcCCchHHHHHH
Q 002870 631 QGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVM----DTLSRLSHDTDSEVAMAA 706 (872)
Q Consensus 631 rr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~ai----d~L~~l~~D~d~~Vr~~A 706 (872)
...++-.+.-+.. ++.-.+.+...+..++.+.++++|+.+..+|+.+.... +.++ +.+....+|+|..||..|
T Consensus 294 ~~ea~~~i~~l~~-~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~--p~~~~~~~~~i~~~l~d~d~~Ir~~a 370 (618)
T 1w63_A 294 LYETVLTIMDIKS-ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD--HNAVQRHRSTIVDCLKDLDVSIKRRA 370 (618)
T ss_dssp HHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH--HHHHGGGHHHHHHGGGSSCHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHccCCChhHHHHH
Confidence 3333333332211 12111346666777788889999999999999886543 3333 456667789999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHhhhhh-ccChhhHHHHHHHHhhhhc
Q 002870 707 VISLGLIGSGTNNARIAGMLRNLSSYY-YKDANLLFCVRIAQGLVHM 752 (872)
Q Consensus 707 iiAlGlV~aGt~n~rv~~~lr~l~s~~-~~d~~~~f~~~lAqGll~~ 752 (872)
+-.+.-+.-.+|-. .++++|..|. ..|+..+-.+.-++|-+..
T Consensus 371 lelL~~l~~~~nv~---~iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 371 MELSFALVNGNNIR---GMMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHCCSSSTH---HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 98887776555533 3445554443 2466666677777776654
No 24
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.85 E-value=0.0025 Score=73.77 Aligned_cols=244 Identities=15% Similarity=0.135 Sum_probs=150.8
Q ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHHHhccCCCH-------HHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHH
Q 002870 467 LALLSEYVG-REDACIRIGAIMGLGISYAGTQND-------QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEV 538 (872)
Q Consensus 467 ~~lL~~~L~-~~~~~v~~gA~lGLGLay~Gt~~~-------~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~ 538 (872)
+..|...|. ++++.++..|+-+|+-+..|+... .....|...+.++ +.+++..|+.|||-+-.. +++.
T Consensus 121 ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~--~~~v~e~A~~aL~nLa~~--~~~~ 196 (529)
T 3tpo_A 121 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGA--GSAF 196 (529)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTT--CHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcc--CHHH
Confidence 445556665 445788888999988887776432 1345566666544 456777899999987432 2222
Q ss_pred ---------HHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChh-----hHHHHHH---HHhhhhhhhhhhhhHHHHH
Q 002870 539 ---------AQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE-----SVEATAE---VSKTFNEKIRKYCDMTLLS 601 (872)
Q Consensus 539 ---------~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e-----~a~~ll~---~L~~~~~~i~r~~~~~~~~ 601 (872)
+..++..|.............|.++..++-+..++.. .+...+. .+...+++-.+..++. +
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~--a 274 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW--A 274 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHH--H
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHH--H
Confidence 2334443321111111234556666667666665532 2222222 2333445555554444 4
Q ss_pred HhhhcCCCHHHHH---------HHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhH-----HHHHHHHHhhcCChhH
Q 002870 602 CAYAGTGNVLKVQ---------NLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM-----AIRSLEHLLQYGEQNI 667 (872)
Q Consensus 602 lAyaGTGn~~~i~---------~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~-----~~~il~~L~~~~~~~V 667 (872)
++|...++...++ .|...+.+ .+ ..++..++-+++-|+.+++..... +...+-.|+++.++.|
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~--~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i 351 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGA-TE--LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 351 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHTC-SC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhcC-CC--hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHH
Confidence 5666666654433 34454433 22 278889999999998887622111 2234566778889999
Q ss_pred HhHHHHHHhhhccCCCch-------HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 002870 668 RRAVPLALGLLCISNPKV-------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 719 (872)
Q Consensus 668 R~ga~lALGL~~agt~~~-------~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n 719 (872)
|..++.+|+-++++++.. .++..|..+..+.+..|+..|+.|++-+..+.+.
T Consensus 352 ~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~ 410 (529)
T 3tpo_A 352 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV 410 (529)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH
Confidence 999999999999987753 3566777888899999999999999977766553
No 25
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.85 E-value=0.0031 Score=77.08 Aligned_cols=317 Identities=11% Similarity=0.042 Sum_probs=174.3
Q ss_pred hccCCCchhHHHHHHHHHHhhc----CCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH-------HHHHH
Q 002870 436 YFHSTDNHVIAGALLGVGIVNC----GIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-------QIRHK 504 (872)
Q Consensus 436 yL~s~~~~~k~GAllaLGli~~----G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~-------~i~e~ 504 (872)
.+.++++.+|..+..+++.+.. +...+ .+..|...+.+++..++.+++..||-+.-..... ...+.
T Consensus 98 ~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~---ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~ 174 (852)
T 4fdd_A 98 NIGDSSPLIRATVGILITTIASKGELQNWPD---LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNI 174 (852)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHHHTTTTTCTT---HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhcCccccHH---HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHH
Confidence 3456677888888888887743 22223 7788888888888899999999999876443321 11334
Q ss_pred HHHHh----cCCCCchHHHHHHHHHHHhHhcCCCCHHH---HHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhh-
Q 002870 505 LSTIL----NDAKSPLDVIAFSAISLGLIYVGSCNEEV---AQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES- 576 (872)
Q Consensus 505 L~~~L----~d~~~~~e~~~~AaLALGLi~lGs~n~~~---~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~- 576 (872)
+.|.+ .|+ +.+++..|.-+|+-+.-+.. ... .+.++..+......+ ...+.+.+.-+++-+.-...+.
T Consensus 175 il~~l~~~l~~~--~~~vR~~A~~aL~~~~~~~~-~~~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 175 MIPKFLQFFKHS--SPKIRSHAVACVNQFIISRT-QALMLHIDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHTTTTTCS--SHHHHHHHHHHHHTTTTTTC-HHHHTSHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHHH
Confidence 44443 343 45666677777775543322 211 123333333221111 3345556655665444333321
Q ss_pred -------HHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCC---------CHHHHHHHHHhhc----------cc----CCC
Q 002870 577 -------VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTG---------NVLKVQNLLGHCA----------QH----HEK 626 (872)
Q Consensus 577 -------a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTG---------n~~~i~~LL~~~~----------~~----~~d 626 (872)
++.++..+. ++++-.|..++-.+. ..+... -...+..++.... .+ .++
T Consensus 251 ~~~l~~l~~~l~~~~~-~~~~~vr~~a~e~l~-~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~ 328 (852)
T 4fdd_A 251 LPHMHNIVEYMLQRTQ-DQDENVALEACEFWL-TLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG 328 (852)
T ss_dssp GGGHHHHHHHHHHHHT-CSSHHHHHHHHHHHH-HHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHcc-CCcHHHHHHHHHHHH-HHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccc
Confidence 222333333 234444444332211 111111 1123334444431 11 000
Q ss_pred -----CccchhhhHhHhhhhhhcchh-hHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc------hHHHHHHHHh
Q 002870 627 -----GEAYQGPAVLGIAMVAMAEEL-GLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK------VNVMDTLSRL 694 (872)
Q Consensus 627 -----~~~vrr~Avl~iglI~~~~~~-g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~------~~aid~L~~l 694 (872)
+-.+|+.|.-+++-++-.-+. -...+...+..++++.++.+|.+++.|+|-+.-|.+. ..++..|.++
T Consensus 329 dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~ 408 (852)
T 4fdd_A 329 DDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQC 408 (852)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 014688888887776543220 0122334445556778999999999999999777653 4577788888
Q ss_pred hcCCchHHHHHHHHHHHHHcCCC----CchHHHHHHHHhhhhh-ccChhhHHHHHHHHhhhhcCCCceeeccc
Q 002870 695 SHDTDSEVAMAAVISLGLIGSGT----NNARIAGMLRNLSSYY-YKDANLLFCVRIAQGLVHMGKGLLTLNPY 762 (872)
Q Consensus 695 ~~D~d~~Vr~~AiiAlGlV~aGt----~n~rv~~~lr~l~s~~-~~d~~~~f~~~lAqGll~~G~g~~tlsp~ 762 (872)
.+|++..||..|+.++|-+.... ...-+..++..|.+.. ..++.++-.+.-|++-+.-+.|.. +.|+
T Consensus 409 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~-l~~~ 480 (852)
T 4fdd_A 409 LSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPY 480 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-GGGG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh-hHhH
Confidence 99999999999999998765421 1112233333333322 256777777777777665443332 4443
No 26
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.70 E-value=8.6e-05 Score=69.72 Aligned_cols=118 Identities=17% Similarity=0.120 Sum_probs=72.1
Q ss_pred HHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHH
Q 002870 611 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDT 690 (872)
Q Consensus 611 ~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~ 690 (872)
..+..++..+.+ .+ +.+|+.|+.+++-+ +++ .++.++ .++++.++.||..++.+||-+ ++.++++.
T Consensus 12 ~~~~~l~~~L~~-~~--~~vR~~A~~~L~~~--~~~----~~~~L~-~~L~d~~~~vR~~A~~aL~~~----~~~~a~~~ 77 (131)
T 1te4_A 12 SGLVPRGSHMAD-EN--KWVRRDVSTALSRM--GDE----AFEPLL-ESLSNEDWRIRGAAAWIIGNF----QDERAVEP 77 (131)
T ss_dssp ---------CCS-SC--CCSSSSCCSSTTSC--SST----THHHHH-HGGGCSCHHHHHHHHHHHGGG----CSHHHHHH
T ss_pred ccHHHHHHHhcC-CC--HHHHHHHHHHHHHh--Cch----HHHHHH-HHHcCCCHHHHHHHHHHHHhc----CCHHHHHH
Confidence 344455555543 22 26787777777754 333 244443 444667888888888888877 45677888
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhhccChhhHHHHHHHHh
Q 002870 691 LSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQG 748 (872)
Q Consensus 691 L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~s~~~~d~~~~f~~~lAqG 748 (872)
|.++.+|++..||..|+.++|-++ +++....|.++.+ ..|+.++..+.-|+|
T Consensus 78 L~~~L~d~~~~VR~~A~~aL~~~~----~~~a~~~L~~~l~--d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 78 LIKLLEDDSGFVRSGAARSLEQIG----GERVRAAMEKLAE--TGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHCCTHHHHHHHHHHHHHC----SHHHHHHHHHHTT--SCCTHHHHHHHHHGG
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhC----cHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 888888888888888888888875 3444444444433 356777777776665
No 27
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.60 E-value=0.019 Score=69.45 Aligned_cols=307 Identities=13% Similarity=0.063 Sum_probs=156.2
Q ss_pred hccCCCchhHHHHHHHHHHhhc-----CCCCChhhHHHHHHhhcCCC--CHHHHHHHHHHHHHHhccCC-------CHHH
Q 002870 436 YFHSTDNHVIAGALLGVGIVNC-----GIRNDCDPALALLSEYVGRE--DACIRIGAIMGLGISYAGTQ-------NDQI 501 (872)
Q Consensus 436 yL~s~~~~~k~GAllaLGli~~-----G~~~e~d~~~~lL~~~L~~~--~~~v~~gA~lGLGLay~Gt~-------~~~i 501 (872)
.+.++++.+ .++...++.+.. +...+ ++..|...+.++ ++.+|.+++..|+-+.--.. -..+
T Consensus 98 ~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~---ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (876)
T 1qgr_A 98 TLGTETYRP-SSASQCVAGIACAEIPVNQWPE---LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (876)
T ss_dssp HTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTT---HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred HhCCCcHHH-HHHHHHHHHHHHhhCcccccHH---HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHH
Confidence 344445555 556555554422 33333 778888888877 88889999988887653211 1344
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHhHhc--CCC--CHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCCh---
Q 002870 502 RHKLSTILNDAKSPLDVIAFSAISLGLIYV--GSC--NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ--- 574 (872)
Q Consensus 502 ~e~L~~~L~d~~~~~e~~~~AaLALGLi~l--Gs~--n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~--- 574 (872)
...+...+.++..+.++...|.-+++.+.- +.. .....+.+++.+.+....+ +.++.+.+.-.++-+.-...
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~ 252 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYM 252 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHH
Confidence 555555555543234555566666765532 211 1111123444443321111 23344444434433221111
Q ss_pred ------hhHHHHHHHHhhhhhhhhhhhhH-HHHHHh-hh-------------c------CCC------HHHHHHHHHhhc
Q 002870 575 ------ESVEATAEVSKTFNEKIRKYCDM-TLLSCA-YA-------------G------TGN------VLKVQNLLGHCA 621 (872)
Q Consensus 575 ------e~a~~ll~~L~~~~~~i~r~~~~-~~~~lA-ya-------------G------TGn------~~~i~~LL~~~~ 621 (872)
.-.+.+++.+.. .++-.|..+. +...++ .. + .-+ ...+..+++.+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 253 ETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp HHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 112222222222 1222222111 111111 00 0 001 123334455543
Q ss_pred ccC----CCCccchhhhHhHhhhhhhcchhhHhHHHH---HHHHHhhcCChhHHhHHHHHHhhhccCCC-c------hHH
Q 002870 622 QHH----EKGEAYQGPAVLGIAMVAMAEELGLEMAIR---SLEHLLQYGEQNIRRAVPLALGLLCISNP-K------VNV 687 (872)
Q Consensus 622 ~~~----~d~~~vrr~Avl~iglI~~~~~~g~e~~~~---il~~L~~~~~~~VR~ga~lALGL~~agt~-~------~~a 687 (872)
+.. +++..+|++|.-+++.++-.-+ ...++. .+...+.+.++.+|.+++.++|-+..+.+ . ..+
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~ 409 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA 409 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCc--HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 221 1112678888888877754432 123333 34444567889999999999999987765 2 245
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHcCCCC-----chHHHHHHHHhhhhhccChhhHHHHHHHHhhh
Q 002870 688 MDTLSRLSHDTDSEVAMAAVISLGLIGSGTN-----NARIAGMLRNLSSYYYKDANLLFCVRIAQGLV 750 (872)
Q Consensus 688 id~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~-----n~rv~~~lr~l~s~~~~d~~~~f~~~lAqGll 750 (872)
+..|.+..+|++..||..|+.++|-+..... .+-+..++..+......++..+-.+.-|++-+
T Consensus 410 l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l 477 (876)
T 1qgr_A 410 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSL 477 (876)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6667777899999999999999998765432 13344444444443333455554444444433
No 28
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.59 E-value=0.001 Score=66.42 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=60.7
Q ss_pred cchhhhHhHhhhhhhcchhhH-----hHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch-------HHHHHHHHhhc
Q 002870 629 AYQGPAVLGIAMVAMAEELGL-----EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSRLSH 696 (872)
Q Consensus 629 ~vrr~Avl~iglI~~~~~~g~-----e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~-------~aid~L~~l~~ 696 (872)
.+|..|+-+++-++.+++... ..+...+-.++++.++.+|..++.+|+-++.+++.. .+++.|.++.+
T Consensus 111 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 190 (210)
T 4db6_A 111 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190 (210)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh
Confidence 566677777777765554211 112344445567778999999999999988765433 46788888999
Q ss_pred CCchHHHHHHHHHHHHH
Q 002870 697 DTDSEVAMAAVISLGLI 713 (872)
Q Consensus 697 D~d~~Vr~~AiiAlGlV 713 (872)
+.+..|+..|..+++-+
T Consensus 191 ~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 191 HENEKIQKEAQEALEKL 207 (210)
T ss_dssp CSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998888765
No 29
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.58 E-value=0.015 Score=73.86 Aligned_cols=280 Identities=11% Similarity=0.084 Sum_probs=162.7
Q ss_pred hHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCC-hhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH--------
Q 002870 429 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND-CDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-------- 499 (872)
Q Consensus 429 ~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e-~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~-------- 499 (872)
.+..+-+++.+.++.+|..|+.++|-+..+...+ .+.++..|.+.+.++++.+|.+|+.+||-+......+
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~ 128 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 128 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence 4555667778888999999999999887654321 1346667777788888888999999999876433322
Q ss_pred HHHHHHHHHh----cCCCCchHHHHHHHHHHHhHhc--CCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCC
Q 002870 500 QIRHKLSTIL----NDAKSPLDVIAFSAISLGLIYV--GSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGK 573 (872)
Q Consensus 500 ~i~e~L~~~L----~d~~~~~e~~~~AaLALGLi~l--Gs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~ 573 (872)
...+.++|.+ .| +.+.+++..|.-+++-+.- |..=....+.++..+...-..+ +..+.+.++-+++.+.-..
T Consensus 129 ~~~~~llp~L~~~l~~-~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~-~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 129 NVCKKITGRLTSAIAK-QEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHHHHHSC-CSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHhc
Confidence 2344455544 43 2245666677777776642 3211112344555444321111 2234445556666554333
Q ss_pred hh-----hHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCC------HHHHHHHHHhhcccCCCCccchhhhHhHhhhhh
Q 002870 574 QE-----SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGN------VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVA 642 (872)
Q Consensus 574 ~e-----~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn------~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~ 642 (872)
++ -.+.+++.+....++-.|..++-+++......|. ...++.+++.+.++ ++ .+|..+.-+++.+.
T Consensus 207 ~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~-~~--~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 207 GNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD-DD--ELREYCIQAFESFV 283 (1230)
T ss_dssp ----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC-CT--TTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CH--HHHHHHHHHHHHHH
Confidence 32 3666777776654444455555554444333343 34566777777532 33 78988888877665
Q ss_pred hc--chhhHhHHHHHHHHHhh----------------------------------------cCChhHHhHHHHHHhhhcc
Q 002870 643 MA--EELGLEMAIRSLEHLLQ----------------------------------------YGEQNIRRAVPLALGLLCI 680 (872)
Q Consensus 643 ~~--~~~g~e~~~~il~~L~~----------------------------------------~~~~~VR~ga~lALGL~~a 680 (872)
-. +++ ....+.++..+++ +....||++++-+++.+..
T Consensus 284 ~~~~~~~-~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~ 362 (1230)
T 1u6g_C 284 RRCPKEV-YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS 362 (1230)
T ss_dssp HCTTCCC-HHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHT
T ss_pred HHChHHH-HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHH
Confidence 32 211 1123333333321 1124689999999998876
Q ss_pred CCCc--h----HHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 002870 681 SNPK--V----NVMDTLSRLSHDTDSEVAMAAVISLGLIG 714 (872)
Q Consensus 681 gt~~--~----~aid~L~~l~~D~d~~Vr~~AiiAlGlV~ 714 (872)
..|. . +++..|.....|++..||..|+-+++-+.
T Consensus 363 ~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 363 TRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL 402 (1230)
T ss_dssp TCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 5553 1 22344555568999999998887776554
No 30
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.56 E-value=0.018 Score=63.84 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=58.9
Q ss_pred cchhhhHhHhhhhhhcchh-hHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCC-c------hHHHHHHHHhhcCCch
Q 002870 629 AYQGPAVLGIAMVAMAEEL-GLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP-K------VNVMDTLSRLSHDTDS 700 (872)
Q Consensus 629 ~vrr~Avl~iglI~~~~~~-g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~-~------~~aid~L~~l~~D~d~ 700 (872)
.+|++|.-+++-++-.-+. -...+...+...+++.++.+|.++++++|-++.|.. + ..++..|.++.+|++.
T Consensus 343 ~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~ 422 (462)
T 1ibr_B 343 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 422 (462)
T ss_dssp SHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 5677777777766543220 012233344445567788889999888888876654 1 4577788888888888
Q ss_pred HHHHHHHHHHHHHcC
Q 002870 701 EVAMAAVISLGLIGS 715 (872)
Q Consensus 701 ~Vr~~AiiAlGlV~a 715 (872)
.||..|+.++|-+..
T Consensus 423 ~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 423 VVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888887654
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.55 E-value=0.0056 Score=74.59 Aligned_cols=279 Identities=15% Similarity=0.112 Sum_probs=161.8
Q ss_pred hHHhHhhhccCCCchhHHHHHHHHHHhhcCCCC-----ChhhHHHHHHhhcCC-CCHHHHHHHHHHHHHHhccCCC----
Q 002870 429 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRN-----DCDPALALLSEYVGR-EDACIRIGAIMGLGISYAGTQN---- 498 (872)
Q Consensus 429 ~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~-----e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGLay~Gt~~---- 498 (872)
++..|.++|.++++.++.-|+.+|+.+.....+ +...++..|...|.+ ++..++..|+-.|.-......+
T Consensus 151 ~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i 230 (780)
T 2z6g_A 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAI 230 (780)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHH
Confidence 466677777788899999999999988653210 011255566666653 3778888888777764332111
Q ss_pred --HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCH-------HHHHHHHHHHhhcCccccCchhHhHHHHHHHhh
Q 002870 499 --DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE-------EVAQAIIFALMDRSESELGEPLTRLIPLGLGLL 569 (872)
Q Consensus 499 --~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~-------~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl 569 (872)
..++..|...+.+. +.+++..|+.+|+-+..++.+. .++..++..|.+ . +.++.+.++-++..+
T Consensus 231 ~~~g~I~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~----~-~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 231 FKSGGIPALVNMLGSP--VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----T-NVKFLAITTDCLQIL 303 (780)
T ss_dssp HHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC----C-CHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc----C-CHHHHHHHHHHHHHH
Confidence 13556677777654 3566778999999887765432 233445544321 1 234444444455544
Q ss_pred hcCCh---------hhHHHHHHHHhhhhhhhhhhh-hHHHHHHhhhcCCCHH------HHHHHHHhhcccCCCCccchhh
Q 002870 570 YLGKQ---------ESVEATAEVSKTFNEKIRKYC-DMTLLSCAYAGTGNVL------KVQNLLGHCAQHHEKGEAYQGP 633 (872)
Q Consensus 570 ~~G~~---------e~a~~ll~~L~~~~~~i~r~~-~~~~~~lAyaGTGn~~------~i~~LL~~~~~~~~d~~~vrr~ 633 (872)
..+.. ..++.+++.+........+.. ......++.. ..+.. ++..|+..+.+. + +.+++.
T Consensus 304 a~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~~-~--~~~~~~ 379 (780)
T 2z6g_A 304 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDP-S--QRLVQN 379 (780)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTTCS-C--HHHHHH
T ss_pred hcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHcCC-c--hHHHHH
Confidence 44432 345556666654332222221 1122222211 11111 345566666543 2 257777
Q ss_pred hHhHhhhhhhcch--hhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-------hHHHHHHHHhhcC-Cc-hHH
Q 002870 634 AVLGIAMVAMAEE--LGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-------VNVMDTLSRLSHD-TD-SEV 702 (872)
Q Consensus 634 Avl~iglI~~~~~--~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-------~~aid~L~~l~~D-~d-~~V 702 (872)
++-.++-++-+.+ .+.+.+...+-.++++.++.+|..++.+|+-++.+++. ..+++.|.++..+ .+ ..|
T Consensus 380 a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v 459 (780)
T 2z6g_A 380 CLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 459 (780)
T ss_dssp HHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHH
Confidence 7666666654332 11234555556667888999999999999998776542 2356666666654 33 389
Q ss_pred HHHHHHHHHHHcCCCC
Q 002870 703 AMAAVISLGLIGSGTN 718 (872)
Q Consensus 703 r~~AiiAlGlV~aGt~ 718 (872)
+..|+.++|-+..+..
T Consensus 460 ~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 460 TEPAICALRHLTSRHQ 475 (780)
T ss_dssp HHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHHhcCc
Confidence 9999999998866544
No 32
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.54 E-value=0.029 Score=64.58 Aligned_cols=302 Identities=10% Similarity=0.072 Sum_probs=181.5
Q ss_pred cCchhHHHHHHHhhhhccccchh---------hHHhHhhhccC-CCchhHHHHHHHHHHhhcCCCCChh-----hHHHHH
Q 002870 406 NKEHGKMSAAASLGMILLWDVDS---------GLAQIDKYFHS-TDNHVIAGALLGVGIVNCGIRNDCD-----PALALL 470 (872)
Q Consensus 406 ~~~~~k~~A~aslGlI~~~~~~~---------~l~~l~~yL~s-~~~~~k~GAllaLGli~~G~~~e~d-----~~~~lL 470 (872)
+....++.|+.++.-+..-+.++ ++..|-.+|.+ +++.++.-|+.+|+-+.+|...... -++..|
T Consensus 69 ~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~L 148 (510)
T 3ul1_B 69 NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF 148 (510)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHH
Confidence 34456777777776554332221 35556677764 4567899999999988776432111 156678
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhccCCC-H------HHHHHHHHHhcCCC---CchHHHHHHHHHHHhHhcCCCC---HH
Q 002870 471 SEYVGREDACIRIGAIMGLGISYAGTQN-D------QIRHKLSTILNDAK---SPLDVIAFSAISLGLIYVGSCN---EE 537 (872)
Q Consensus 471 ~~~L~~~~~~v~~gA~lGLGLay~Gt~~-~------~i~e~L~~~L~d~~---~~~e~~~~AaLALGLi~lGs~n---~~ 537 (872)
...|.+++..++..|+-+||-+...+.. . .....|...+.+.+ ........++.+|.-+..+... ..
T Consensus 149 v~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 228 (510)
T 3ul1_B 149 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 228 (510)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHH
Confidence 8889999999999999999977543221 1 13455666665332 1233445677777777665432 22
Q ss_pred HHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhH---------HHHHHHHhhhhhhhhhhhhHHHHHHhhhcCC
Q 002870 538 VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV---------EATAEVSKTFNEKIRKYCDMTLLSCAYAGTG 608 (872)
Q Consensus 538 ~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a---------~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTG 608 (872)
.+..++..|..--..+ .+.+...++.+++-+.-+..+.. +.+++.|... ++-.+..++.+ ++...+|
T Consensus 229 ~~~~~lp~L~~LL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~a--L~nl~~~ 304 (510)
T 3ul1_B 229 AVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRA--IGNIVTG 304 (510)
T ss_dssp HHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHH--HHHHTTS
T ss_pred HHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHH--HHHhhcC
Confidence 3334444443221111 34566666667766655555443 3445555443 33334334433 4445577
Q ss_pred CHHHHHHHHH---------hhcccCCCCccchhhhHhHhhhhhhcchhhHh-----HHHHHHHHHhhcCChhHHhHHHHH
Q 002870 609 NVLKVQNLLG---------HCAQHHEKGEAYQGPAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLA 674 (872)
Q Consensus 609 n~~~i~~LL~---------~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e-----~~~~il~~L~~~~~~~VR~ga~lA 674 (872)
+....+.++. .+. +.+ +.+|+.|+.+|+-++.+.+.... .+...+-.+++++++.+|..++.|
T Consensus 305 ~~~~~~~i~~~g~l~~L~~LL~-~~~--~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~a 381 (510)
T 3ul1_B 305 TDEQTQKVIDAGALAVFPSLLT-NPK--TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381 (510)
T ss_dssp CHHHHHHHHHTTGGGGCC-CTT-CSS--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CHHHHHHHhhccchHHHHHHhc-CCC--HHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 7665555443 221 222 37899999999999887762211 123344556688899999999999
Q ss_pred HhhhccC-CCc-------hHHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 002870 675 LGLLCIS-NPK-------VNVMDTLSRLSHDTDSEVAMAAVISLGLIG 714 (872)
Q Consensus 675 LGL~~ag-t~~-------~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~ 714 (872)
|+-++.+ ++. ..+++.|..+.+.+|..+++.++-++.-++
T Consensus 382 L~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 382 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9976543 332 234667788888999999888777766553
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.52 E-value=0.01 Score=72.27 Aligned_cols=301 Identities=13% Similarity=0.049 Sum_probs=175.6
Q ss_pred hhHHHHHHHhhhhcccc--------chhhHHhHhhhccC-CCchhHHHHHHHHHHhhcCCCCC----hhhHHHHHHhhcC
Q 002870 409 HGKMSAAASLGMILLWD--------VDSGLAQIDKYFHS-TDNHVIAGALLGVGIVNCGIRND----CDPALALLSEYVG 475 (872)
Q Consensus 409 ~~k~~A~aslGlI~~~~--------~~~~l~~l~~yL~s-~~~~~k~GAllaLGli~~G~~~e----~d~~~~lL~~~L~ 475 (872)
..+-.|+.+|+.+...+ ..+++..|-..|.+ .+..++.-|+.+|.-+.....+. ...++..|...|.
T Consensus 165 ~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~ 244 (780)
T 2z6g_A 165 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG 244 (780)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc
Confidence 46777777887765432 22345555556654 37778888888877654321000 0025667788888
Q ss_pred CCCHHHHHHHHHHHHHHhccCCC-------HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCC-------CCHHHHHH
Q 002870 476 REDACIRIGAIMGLGISYAGTQN-------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGS-------CNEEVAQA 541 (872)
Q Consensus 476 ~~~~~v~~gA~lGLGLay~Gt~~-------~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs-------~n~~~~e~ 541 (872)
++++.++..|+-.|+-+..++.+ ..++..|...+.++ +.++...++-+|..+-.+. .....++.
T Consensus 245 ~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~--~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~ 322 (780)
T 2z6g_A 245 SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQA 322 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHH
Confidence 88899999999999988766432 24556777777654 3344445555666544332 11234566
Q ss_pred HHHHHhhcCccccCchhHhHHHHHHHhhhcCChh--------hHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcC---CCH
Q 002870 542 IIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE--------SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGT---GNV 610 (872)
Q Consensus 542 ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e--------~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGT---Gn~ 610 (872)
++..|... . .+.....++-++..+...... .++.+++.+...+..+.+.+......++...+ +..
T Consensus 323 Lv~lL~~~--~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 398 (780)
T 2z6g_A 323 LVNIMRTY--T--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME 398 (780)
T ss_dssp HHHHHTTC--C--CHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCH
T ss_pred HHHHHhcC--C--HHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhh
Confidence 66654321 1 122222222233333322211 12334444433333333333222222332221 235
Q ss_pred HHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhH------hHHHHHHHHHhhcCCh-hHHhHHHHHHhhhccCCC
Q 002870 611 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGL------EMAIRSLEHLLQYGEQ-NIRRAVPLALGLLCISNP 683 (872)
Q Consensus 611 ~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~------e~~~~il~~L~~~~~~-~VR~ga~lALGL~~agt~ 683 (872)
.++..|++.+.+. + +.+|..|+.+++-++.+.+... ..++.++..|.+..++ .||..++.+||-++..++
T Consensus 399 ~~i~~Lv~lL~~~-d--~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 399 GLLGTLVQLLGSD-D--INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp HHHHHHHHHTTCS-C--HHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred hHHHHHHHHHcCC-C--HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 6777777776542 2 3789999999999888754211 2456677777665554 999999999999987666
Q ss_pred ch----------HHHHHHHHhhcCCch-HHHHHHHHHHHHHcCCCC
Q 002870 684 KV----------NVMDTLSRLSHDTDS-EVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 684 ~~----------~aid~L~~l~~D~d~-~Vr~~AiiAlGlV~aGt~ 718 (872)
.. .++..|.++..+++. .|+..|+.+++-+..+..
T Consensus 476 ~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~ 521 (780)
T 2z6g_A 476 DAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 521 (780)
T ss_dssp THHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH
Confidence 53 235667777766664 899999999998887543
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.46 E-value=0.021 Score=64.76 Aligned_cols=301 Identities=13% Similarity=0.016 Sum_probs=172.8
Q ss_pred hhHHHHHHHhhhhccccc--------hhhHHhHhhhccC-CCchhHHHHHHHHHHhhcCCCCC----hhhHHHHHHhhcC
Q 002870 409 HGKMSAAASLGMILLWDV--------DSGLAQIDKYFHS-TDNHVIAGALLGVGIVNCGIRND----CDPALALLSEYVG 475 (872)
Q Consensus 409 ~~k~~A~aslGlI~~~~~--------~~~l~~l~~yL~s-~~~~~k~GAllaLGli~~G~~~e----~d~~~~lL~~~L~ 475 (872)
..+..|+.+++-+-..+. ..++..|-+.|.+ +++.++..|+.+|+-+.....+. ...++..|...+.
T Consensus 32 ~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~ 111 (529)
T 1jdh_A 32 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG 111 (529)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHc
Confidence 456667777766543321 1345555566654 46778888888887754321000 0015567777888
Q ss_pred CCCHHHHHHHHHHHHHHhccCCC-------HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCC-------CHHHHHH
Q 002870 476 REDACIRIGAIMGLGISYAGTQN-------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSC-------NEEVAQA 541 (872)
Q Consensus 476 ~~~~~v~~gA~lGLGLay~Gt~~-------~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~-------n~~~~e~ 541 (872)
++++.++..|+-.|+-...++.+ ..+...|...+.++ +.++...++-+|+.+-.|+. +...++.
T Consensus 112 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~ 189 (529)
T 1jdh_A 112 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQA 189 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHH
Confidence 88889999999999887666432 34566677777654 34555566666765544321 1124556
Q ss_pred HHHHHhhcCccccCchhHhHHHHHHHhhhcCCh--------hhHHHHHHHHhhhhhhhhhhhhHHHH-HHhhhcC---CC
Q 002870 542 IIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ--------ESVEATAEVSKTFNEKIRKYCDMTLL-SCAYAGT---GN 609 (872)
Q Consensus 542 ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~--------e~a~~ll~~L~~~~~~i~r~~~~~~~-~lAyaGT---Gn 609 (872)
+++.|.... .+.....++-.+.-+..... ..++.+++.+... ++-.+..++.++ .++.... +.
T Consensus 190 L~~ll~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~ 264 (529)
T 1jdh_A 190 LVNIMRTYT----YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATKQEGM 264 (529)
T ss_dssp HHHHHHHCC----CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHHHHHHHTTCTTCSCC
T ss_pred HHHHHHhCC----hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHHHHHHHHHHhcCChhhHHH
Confidence 666553221 12222222222222222111 1233444444433 333333333322 2221111 12
Q ss_pred HHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhH------hHHHHHHHHHhhcC-ChhHHhHHHHHHhhhccCC
Q 002870 610 VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGL------EMAIRSLEHLLQYG-EQNIRRAVPLALGLLCISN 682 (872)
Q Consensus 610 ~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~------e~~~~il~~L~~~~-~~~VR~ga~lALGL~~agt 682 (872)
...+..|++.+.+. + ++++..++-+++-++.+++... .-++.++..|.+.. ++.+|..++.+|+-++.++
T Consensus 265 ~~~i~~L~~ll~~~-~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~ 341 (529)
T 1jdh_A 265 EGLLGTLVQLLGSD-D--INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341 (529)
T ss_dssp HHHHHHHHHHTTCS-C--HHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred HhHHHHHHHHHcCC-C--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCC
Confidence 45667777777432 2 3789899999998887654111 23456666665543 4899999999999998776
Q ss_pred Cch----------HHHHHHHHhhcCCc-hHHHHHHHHHHHHHcCCCCc
Q 002870 683 PKV----------NVMDTLSRLSHDTD-SEVAMAAVISLGLIGSGTNN 719 (872)
Q Consensus 683 ~~~----------~aid~L~~l~~D~d-~~Vr~~AiiAlGlV~aGt~n 719 (872)
+.. .++..|.++.++++ ..|+..|+.+++-+..+..+
T Consensus 342 ~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~ 389 (529)
T 1jdh_A 342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 389 (529)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG
T ss_pred chHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh
Confidence 653 34667777877776 48999999999999887554
No 35
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.45 E-value=0.027 Score=63.90 Aligned_cols=296 Identities=13% Similarity=0.026 Sum_probs=152.8
Q ss_pred hhHHHHHHHhhhhccccc--------hhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCC-----hhhHHHHHHhhcC
Q 002870 409 HGKMSAAASLGMILLWDV--------DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND-----CDPALALLSEYVG 475 (872)
Q Consensus 409 ~~k~~A~aslGlI~~~~~--------~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e-----~d~~~~lL~~~L~ 475 (872)
..+..|+.+|+-+-..+. ..++..|-+.+.+++..++..++.+|+.+..+.... ....+..|...+.
T Consensus 116 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~ 195 (529)
T 1jdh_A 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195 (529)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHH
Confidence 456667777776644321 235667777787777777777777777665542100 0013334444444
Q ss_pred CC-CHHHHHHHHHHHHHHhccCCC------HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCC----HHHHHHHHH
Q 002870 476 RE-DACIRIGAIMGLGISYAGTQN------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN----EEVAQAIIF 544 (872)
Q Consensus 476 ~~-~~~v~~gA~lGLGLay~Gt~~------~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n----~~~~e~ll~ 544 (872)
+. .+..+..++-.|.-....... ..+.+.|.+.+.+. +.++...++.+|+-+.-+... ..++..+++
T Consensus 196 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ 273 (529)
T 1jdh_A 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 273 (529)
T ss_dssp HCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS--CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHH
T ss_pred hCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC--ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHH
Confidence 33 334444444444333222211 12455666666554 445555677777766444322 245555555
Q ss_pred HHhhcCccccCchhHhHHHHHHHhhhcCChh---------hHHHHHHHHhhhhh-hhhhhhhHHHHHHhhhcCCCHH---
Q 002870 545 ALMDRSESELGEPLTRLIPLGLGLLYLGKQE---------SVEATAEVSKTFNE-KIRKYCDMTLLSCAYAGTGNVL--- 611 (872)
Q Consensus 545 ~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e---------~a~~ll~~L~~~~~-~i~r~~~~~~~~lAyaGTGn~~--- 611 (872)
.|. + + +..+...++-+++-+..+..+ .++.+++.+...++ +-.+..++.+++---.+.+...
T Consensus 274 ll~--~--~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 348 (529)
T 1jdh_A 274 LLG--S--D-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 348 (529)
T ss_dssp HTT--C--S-CHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHH
T ss_pred HHc--C--C-CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 442 1 1 234555555566655444332 35666777765332 4455555555443322222221
Q ss_pred -------HHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhH-----hHHHHHHHHHhhcCChhHHhHHHHHHhh--
Q 002870 612 -------KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGL-----EMAIRSLEHLLQYGEQNIRRAVPLALGL-- 677 (872)
Q Consensus 612 -------~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~-----e~~~~il~~L~~~~~~~VR~ga~lALGL-- 677 (872)
.+..|++.+.+..++ .+++.++-.++-++.+.+... .-++.++. ++++.++.+|..++++++-
T Consensus 349 ~~i~~~~~i~~L~~lL~~~~~~--~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~l~n~~ 425 (529)
T 1jdh_A 349 NAVRLHYGLPVVVKLLHPPSHW--PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ-LLVRAHQDTQRRTSMGGTQQQ 425 (529)
T ss_dssp HHHHHTTCHHHHHHTTSTTCCH--HHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHH-HHHHHHHHHC-----------
T ss_pred HHHHHcCChhHHHHHhccccch--HHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHH-HHHHHhHHHHHHHhcccCchh
Confidence 234556665543322 688888888888887654211 12333444 4456678888877666552
Q ss_pred --------------------hccCC------CchHHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 002870 678 --------------------LCISN------PKVNVMDTLSRLSHDTDSEVAMAAVISLGLIG 714 (872)
Q Consensus 678 --------------------~~agt------~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~ 714 (872)
++... .+..+++.|.++.+|++..|+..|..+++-+.
T Consensus 426 ~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~ 488 (529)
T 1jdh_A 426 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488 (529)
T ss_dssp CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred hhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 21110 01123467778889999999999998888765
No 36
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.42 E-value=0.0001 Score=69.23 Aligned_cols=116 Identities=17% Similarity=0.100 Sum_probs=78.9
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHH
Q 002870 578 EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLE 657 (872)
Q Consensus 578 ~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~ 657 (872)
+.+++.|. ++++..|..++.+++ ..|... +..|+..+. +.+ +.||..|+.++|-+. ++ +.++.++
T Consensus 15 ~~l~~~L~-~~~~~vR~~A~~~L~--~~~~~~---~~~L~~~L~-d~~--~~vR~~A~~aL~~~~--~~---~a~~~L~- 79 (131)
T 1te4_A 15 VPRGSHMA-DENKWVRRDVSTALS--RMGDEA---FEPLLESLS-NED--WRIRGAAAWIIGNFQ--DE---RAVEPLI- 79 (131)
T ss_dssp ------CC-SSCCCSSSSCCSSTT--SCSSTT---HHHHHHGGG-CSC--HHHHHHHHHHHGGGC--SH---HHHHHHH-
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHH--HhCchH---HHHHHHHHc-CCC--HHHHHHHHHHHHhcC--CH---HHHHHHH-
Confidence 33444443 356666666554432 333332 466666665 333 379999999988864 33 3344444
Q ss_pred HHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 002870 658 HLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGL 712 (872)
Q Consensus 658 ~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGl 712 (872)
.++++.++.||..++.|||-+ ++.++++.|.++.+|++..||..|+.|++-
T Consensus 80 ~~L~d~~~~VR~~A~~aL~~~----~~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 80 KLLEDDSGFVRSGAARSLEQI----GGERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHCCTHHHHHHHHHHHHH----CSHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 455788999999999999988 578899999999999999999999988864
No 37
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.41 E-value=0.015 Score=58.86 Aligned_cols=216 Identities=20% Similarity=0.215 Sum_probs=126.6
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCH-------HHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCCh
Q 002870 502 RHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE-------EVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ 574 (872)
Q Consensus 502 ~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~-------~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~ 574 (872)
.+.|...+.+++ .+++..|+.+|+-+..+..+. .++..+++.|.. . +..+.+.++.+++-+..+..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~-~~~v~~~a~~~L~~l~~~~~ 76 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS----T-DSEVQKEAARALANIASGPD 76 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----S-CHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC----C-CHHHHHHHHHHHHHHHcCCh
Confidence 466777776553 566678888888875544310 133444443311 1 23444455555554443323
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHh----
Q 002870 575 ESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLE---- 650 (872)
Q Consensus 575 e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e---- 650 (872)
+..+.+++ . ..++.|++.+.++ + +.+|..++-+++-++.+.+....
T Consensus 77 ~~~~~~~~------------------------~---~~i~~l~~ll~~~-~--~~v~~~a~~~L~~l~~~~~~~~~~~~~ 126 (252)
T 4hxt_A 77 EAIKAIVD------------------------A---GGVEVLVKLLTST-D--SEVQKEAARALANIASGPDEAIKAIVD 126 (252)
T ss_dssp HHHHHHHH------------------------T---THHHHHHHHTTCS-S--HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHH------------------------C---CCHHHHHHHHcCC-C--HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22222111 1 1345566665532 2 27888899999988866552222
Q ss_pred -HHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch-------HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchH-
Q 002870 651 -MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNAR- 721 (872)
Q Consensus 651 -~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~-------~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~r- 721 (872)
.+...+-.++++.++.+|..++.+|+-++.+++.. .++..|.++.++++..|+..|+.+++-+..+..+.+
T Consensus 127 ~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 206 (252)
T 4hxt_A 127 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIK 206 (252)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 23444556677889999999999999998876654 277888899999999999999999999987543211
Q ss_pred -H--HHHHHHhhhhh-ccChhhHHHHHHHHhhhhcCC
Q 002870 722 -I--AGMLRNLSSYY-YKDANLLFCVRIAQGLVHMGK 754 (872)
Q Consensus 722 -v--~~~lr~l~s~~-~~d~~~~f~~~lAqGll~~G~ 754 (872)
+ ...+..|.... +.++..+-.+..+++-+.-..
T Consensus 207 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 207 AIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 0 01112222211 345555555555555554443
No 38
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.40 E-value=0.043 Score=64.92 Aligned_cols=329 Identities=13% Similarity=0.021 Sum_probs=177.5
Q ss_pred hhHHHHHHHhhhhccccc--------hhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCCh-----hhHHHHHHhhcC
Q 002870 409 HGKMSAAASLGMILLWDV--------DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC-----DPALALLSEYVG 475 (872)
Q Consensus 409 ~~k~~A~aslGlI~~~~~--------~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~-----d~~~~lL~~~L~ 475 (872)
..+..|+.+|+-+-..+. ..++..|-+.|.+.+...+..++-+|+.+..+..... ...+..|...+.
T Consensus 113 ~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~ 192 (644)
T 2z6h_A 113 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192 (644)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHH
Confidence 467777777776654321 2356677777877777777777777776665421100 013455556665
Q ss_pred CCC-HHHHHHHHHHHHHHhccCCCH------HHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCC----HHHHHHHHH
Q 002870 476 RED-ACIRIGAIMGLGISYAGTQND------QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN----EEVAQAIIF 544 (872)
Q Consensus 476 ~~~-~~v~~gA~lGLGLay~Gt~~~------~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n----~~~~e~ll~ 544 (872)
+.+ +..+..++-.|.-......+. .+...|.+.+.+. +.++...++-+|+-+.-+... ..++..+++
T Consensus 193 ~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~ 270 (644)
T 2z6h_A 193 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 270 (644)
T ss_dssp TCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS--CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHH
Confidence 543 445545555544433222211 2345566666544 345666677777776544322 245555555
Q ss_pred HHhhcCccccCchhHhHHHHHHHhhhcCChh---------hHHHHHHHHhhhhh-hhhhhhhHHHHHHhhhcCCCHH---
Q 002870 545 ALMDRSESELGEPLTRLIPLGLGLLYLGKQE---------SVEATAEVSKTFNE-KIRKYCDMTLLSCAYAGTGNVL--- 611 (872)
Q Consensus 545 ~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e---------~a~~ll~~L~~~~~-~i~r~~~~~~~~lAyaGTGn~~--- 611 (872)
.|. + . ...+.+.++-+++-+..+..+ .++.+++.+...++ +-.+..++.+++---...++..
T Consensus 271 lL~--~--~-d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q 345 (644)
T 2z6h_A 271 LLG--S--D-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 345 (644)
T ss_dssp HTT--C--S-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHH
T ss_pred HHc--C--C-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 432 1 1 234555555666555444332 35666776665432 4445545544443322223322
Q ss_pred -------HHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhh-----HhHHHHHHHHHhhcCChhHHh----------
Q 002870 612 -------KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG-----LEMAIRSLEHLLQYGEQNIRR---------- 669 (872)
Q Consensus 612 -------~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g-----~e~~~~il~~L~~~~~~~VR~---------- 669 (872)
.+..|++.+.+..++ .++..++-.++-++.+++.. ...++.++.. +.+.++.+|.
T Consensus 346 ~~v~~~~~l~~L~~lL~~~~~~--~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~l-L~~~~~~vr~~a~~al~n~~ 422 (644)
T 2z6h_A 346 NAVRLHYGLPVVVKLLHPPSHW--PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL-LVRAHQDTQRRTSMGGTQQQ 422 (644)
T ss_dssp HHHHHTTHHHHHHHTTSTTCCH--HHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHH-HHHHHHHHTTC---------
T ss_pred HHHHHccChHHHHHHhCccCch--HHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHH-HhccchhhhhHhhhccccch
Confidence 344566666543222 68888888888888765421 1223334443 3444445554
Q ss_pred ------------HHHHHHhhhccCCC------chHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHH--------
Q 002870 670 ------------AVPLALGLLCISNP------KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIA-------- 723 (872)
Q Consensus 670 ------------ga~lALGL~~agt~------~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~-------- 723 (872)
.++-||+-++.... +..++..|.++.++.+..|++.|.-+++-+.. . +...
T Consensus 423 ~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~--~~~~~~i~~~g~ 499 (644)
T 2z6h_A 423 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-D--KEAAEAIEAEGA 499 (644)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT-S--HHHHHHHHHTTC
T ss_pred hcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc-C--HHHHHHHHHcCC
Confidence 44444443332211 12345677788889999999999988887652 2 2222
Q ss_pred -HHHHHhhhhhccChhhHHHHHHHHhhhhc
Q 002870 724 -GMLRNLSSYYYKDANLLFCVRIAQGLVHM 752 (872)
Q Consensus 724 -~~lr~l~s~~~~d~~~~f~~~lAqGll~~ 752 (872)
..|..+. .+.|+..+..+.-|++-+--
T Consensus 500 l~~L~~ll--~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 500 TAPLTELL--HSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HHHHHHHT--TCSCHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHH--cCCCHHHHHHHHHHHHHHhc
Confidence 2233322 25688888888888776543
No 39
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.37 E-value=0.0038 Score=63.91 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=23.6
Q ss_pred hcCChhHHhHHHHHHhhhccCCCch-------HHHHHHHHhhcCCchHHHHHHHHHHH
Q 002870 661 QYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSRLSHDTDSEVAMAAVISLG 711 (872)
Q Consensus 661 ~~~~~~VR~ga~lALGL~~agt~~~-------~aid~L~~l~~D~d~~Vr~~AiiAlG 711 (872)
.+.++.+|..++.+|+-++.+++.. .+++.|.++.++.+..|+..|..+++
T Consensus 190 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 190 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp GCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445555555555555444433321 13344444445555555555544444
No 40
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.27 E-value=0.023 Score=65.73 Aligned_cols=277 Identities=10% Similarity=0.069 Sum_probs=164.9
Q ss_pred HHhHhhhcc-CCCchhHHHHHHHHHHhhcCCCCChh-----hHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC-CH---
Q 002870 430 LAQIDKYFH-STDNHVIAGALLGVGIVNCGIRNDCD-----PALALLSEYVGREDACIRIGAIMGLGISYAGTQ-ND--- 499 (872)
Q Consensus 430 l~~l~~yL~-s~~~~~k~GAllaLGli~~G~~~e~d-----~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~-~~--- 499 (872)
+..|-.+|. +.++.++.-|+.+|+-+..|...... -++..|...+.+++..++..|+.+||-+...+. ..
T Consensus 121 ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i 200 (529)
T 3tpo_A 121 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200 (529)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 334555664 45577888899999988776422111 145677788889999999999999997644321 11
Q ss_pred ---HHHHHHHHHhcCCC---CchHHHHHHHHHHHhHhcCCCC---HHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhh
Q 002870 500 ---QIRHKLSTILNDAK---SPLDVIAFSAISLGLIYVGSCN---EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLY 570 (872)
Q Consensus 500 ---~i~e~L~~~L~d~~---~~~e~~~~AaLALGLi~lGs~n---~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~ 570 (872)
.+...|...+.+.. ........++.+|.-+..+..+ ...+..++..|..--..+ .+.+...++.+++-+.
T Consensus 201 ~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~aL~~l~ 279 (529)
T 3tpo_A 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLT 279 (529)
T ss_dssp HHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhh
Confidence 13455666665332 1233445677777777665532 223334444433211111 3455666666777666
Q ss_pred cCChhhH---------HHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHH---------HHHhhcccCCCCccchh
Q 002870 571 LGKQESV---------EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQN---------LLGHCAQHHEKGEAYQG 632 (872)
Q Consensus 571 ~G~~e~a---------~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~---------LL~~~~~~~~d~~~vrr 632 (872)
-+..+.. +.+++.|... ++-.+..++.+ +....+|+....+. |.+.+.+ .+ +.+|.
T Consensus 280 ~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~a--L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~--~~i~~ 353 (529)
T 3tpo_A 280 DGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRA--IGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PK--TNIQK 353 (529)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHH--HHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SS--HHHHH
T ss_pred hhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHH--HHHHHccchHHHHHHhhcccHHHHHHHHcC-CC--HHHHH
Confidence 6665543 3455555443 33333333333 33345666544333 3444432 22 27899
Q ss_pred hhHhHhhhhhhcchhhHh-----HHHHHHHHHhhcCChhHHhHHHHHHhhhccC-CCch-------HHHHHHHHhhcCCc
Q 002870 633 PAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLALGLLCIS-NPKV-------NVMDTLSRLSHDTD 699 (872)
Q Consensus 633 ~Avl~iglI~~~~~~g~e-----~~~~il~~L~~~~~~~VR~ga~lALGL~~ag-t~~~-------~aid~L~~l~~D~d 699 (872)
.|+.+|+-|+.+.+.... .+...+-.+++++++.+|..++.||+-++.+ ++.. .++..|-.+.+.+|
T Consensus 354 ~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 354 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence 999999999888762211 1233444566888999999999999976553 3321 24667778888899
Q ss_pred hHHHHHHHHHHHHH
Q 002870 700 SEVAMAAVISLGLI 713 (872)
Q Consensus 700 ~~Vr~~AiiAlGlV 713 (872)
..+++.++-|+.-+
T Consensus 434 ~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 434 TKIIQVILDAISNI 447 (529)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99888877776654
No 41
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.26 E-value=0.052 Score=65.46 Aligned_cols=318 Identities=11% Similarity=0.053 Sum_probs=162.8
Q ss_pred HhhhccCCCchhHHHHHHHHHHhhcCCC--CChhhHHHHHHhhcCCC-CHHHHHHHHHHHHHHhccCCC---------HH
Q 002870 433 IDKYFHSTDNHVIAGALLGVGIVNCGIR--NDCDPALALLSEYVGRE-DACIRIGAIMGLGISYAGTQN---------DQ 500 (872)
Q Consensus 433 l~~yL~s~~~~~k~GAllaLGli~~G~~--~e~d~~~~lL~~~L~~~-~~~v~~gA~lGLGLay~Gt~~---------~~ 500 (872)
+-+.+.++++.++..+..+++.+..... +.-...+..|...+.++ ++.++.+++..|+.+.-.... ..
T Consensus 100 ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 179 (861)
T 2bpt_A 100 ALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNN 179 (861)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHH
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHH
Confidence 3344566778888888888887644211 11123777888888887 888999999988877642211 23
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHhH--hcCCC--CHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChh-
Q 002870 501 IRHKLSTILNDAKSPLDVIAFSAISLGLI--YVGSC--NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE- 575 (872)
Q Consensus 501 i~e~L~~~L~d~~~~~e~~~~AaLALGLi--~lGs~--n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e- 575 (872)
+...+...+.|+..+.+++..|.-+++-+ +++.. .....+.+++.+......+ ...+.+.+.-+++-+.-..++
T Consensus 180 ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~ 258 (861)
T 2bpt_A 180 ILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTF 258 (861)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556533456666677777754 22211 1111123444443221111 233444444444433221111
Q ss_pred ---hHH-HHHHHH---hhhhhhhhhhhhHHHH-HHhhhc----------------CCC------HHHHHHHHHhhcccCC
Q 002870 576 ---SVE-ATAEVS---KTFNEKIRKYCDMTLL-SCAYAG----------------TGN------VLKVQNLLGHCAQHHE 625 (872)
Q Consensus 576 ---~a~-~ll~~L---~~~~~~i~r~~~~~~~-~lAyaG----------------TGn------~~~i~~LL~~~~~~~~ 625 (872)
... .++..+ ..+.++-.|..++-.+ .++-.. ..+ ...+..|+....+..+
T Consensus 259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~ 338 (861)
T 2bpt_A 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNE 338 (861)
T ss_dssp CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 122 222221 1222333333322211 111100 001 2234445555443221
Q ss_pred ----CCccchhhhHhHhhhhhhcch-hhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-------hHHHHHHHH
Q 002870 626 ----KGEAYQGPAVLGIAMVAMAEE-LGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-------VNVMDTLSR 693 (872)
Q Consensus 626 ----d~~~vrr~Avl~iglI~~~~~-~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-------~~aid~L~~ 693 (872)
++..+|+.+.-.++-++-.-+ .-...+...+...+++.++.+|.+++.++|-+.-|.+. ..++..|.+
T Consensus 339 d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~ 418 (861)
T 2bpt_A 339 DPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN 418 (861)
T ss_dssp C-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 112467777666665543211 00123334444555678899999999999999866541 245666777
Q ss_pred hhcCCchHHHHHHHHHHHHHcCCC-----CchHHHHHHHHhhhhhccChhhHHHHHHHHhhhh
Q 002870 694 LSHDTDSEVAMAAVISLGLIGSGT-----NNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVH 751 (872)
Q Consensus 694 l~~D~d~~Vr~~AiiAlGlV~aGt-----~n~rv~~~lr~l~s~~~~d~~~~f~~~lAqGll~ 751 (872)
...|++..||..|+.++|-+.... +..-+..++..+....+.++..+..+..|.+-+.
T Consensus 419 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 419 LMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLV 481 (861)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 789999999999998888655321 1122333444433333334666655555555443
No 42
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.26 E-value=0.0044 Score=61.68 Aligned_cols=134 Identities=17% Similarity=0.195 Sum_probs=91.3
Q ss_pred HHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhH-----HHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch-
Q 002870 612 KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM-----AIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV- 685 (872)
Q Consensus 612 ~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~-----~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~- 685 (872)
.+..|++.+.+. + +.+|..|+.+++-++.+++..... +...+-.++++.++.+|..++.+|+-++.+++..
T Consensus 55 ~i~~L~~lL~~~-~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 131 (210)
T 4db6_A 55 ALPALVQLLSSP-N--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131 (210)
T ss_dssp HHHHHHHHTTCS-C--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CHHHHHHHHcCC-C--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHH
Confidence 345566666543 2 278889999999988776522111 2334455667889999999999999998876643
Q ss_pred ------HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchH-------HHHHHHHhhhhhccChhhHHHHHHHHhhh
Q 002870 686 ------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNAR-------IAGMLRNLSSYYYKDANLLFCVRIAQGLV 750 (872)
Q Consensus 686 ------~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~r-------v~~~lr~l~s~~~~d~~~~f~~~lAqGll 750 (872)
.++..|-++..+++..|+..|+.+++-+..+..+.+ +...|.++.+ +.++..+-.+..|++-+
T Consensus 132 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS--HENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 357788888899999999999999999987644321 2233333332 45666666666665543
No 43
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.25 E-value=0.068 Score=63.14 Aligned_cols=302 Identities=14% Similarity=0.051 Sum_probs=176.2
Q ss_pred hhHHHHHHHhhhhccccc--------hhhHHhHhhhccCC-CchhHHHHHHHHHHhhcCCCCC----hhhHHHHHHhhcC
Q 002870 409 HGKMSAAASLGMILLWDV--------DSGLAQIDKYFHST-DNHVIAGALLGVGIVNCGIRND----CDPALALLSEYVG 475 (872)
Q Consensus 409 ~~k~~A~aslGlI~~~~~--------~~~l~~l~~yL~s~-~~~~k~GAllaLGli~~G~~~e----~d~~~~lL~~~L~ 475 (872)
..+..|+.+|+-+-..+. ..++..|-+.|.++ +..++..|+.+|..+.....+. ...++..|...+.
T Consensus 29 ~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~ 108 (644)
T 2z6h_A 29 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG 108 (644)
T ss_dssp HHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHh
Confidence 456677777776654331 13455555666544 6778878887777554321000 0025667778888
Q ss_pred CCCHHHHHHHHHHHHHHhccCCC-------HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCC-------HHHHHH
Q 002870 476 REDACIRIGAIMGLGISYAGTQN-------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCN-------EEVAQA 541 (872)
Q Consensus 476 ~~~~~v~~gA~lGLGLay~Gt~~-------~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n-------~~~~e~ 541 (872)
++++.++..|+-.|+-+..+..+ ..++..|...+.+. +.++...++-+|+.+-.|... ...++.
T Consensus 109 ~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~ 186 (644)
T 2z6h_A 109 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQA 186 (644)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC--CHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHH
Confidence 88899999999999887766432 23566777777655 335555566667766544311 123556
Q ss_pred HHHHHhhcCccccCchhHhHHHHHHHhhhcCChh--------hHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcC---CCH
Q 002870 542 IIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE--------SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGT---GNV 610 (872)
Q Consensus 542 ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e--------~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGT---Gn~ 610 (872)
+++.|... . .+...+.++-++.-+...... .++.+++.+...+..+.+.+......++..+. +..
T Consensus 187 Lv~lL~~~--~--~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 262 (644)
T 2z6h_A 187 LVNIMRTY--T--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME 262 (644)
T ss_dssp HHHHHTTC--C--CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCH
T ss_pred HHHHHHcC--C--hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 66655221 1 233333333333333222221 23344444443333333333333333332211 123
Q ss_pred HHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhH------hHHHHHHHHHhhcCC-hhHHhHHHHHHhhhccCCC
Q 002870 611 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGL------EMAIRSLEHLLQYGE-QNIRRAVPLALGLLCISNP 683 (872)
Q Consensus 611 ~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~------e~~~~il~~L~~~~~-~~VR~ga~lALGL~~agt~ 683 (872)
..+..|++.+.+. + +.+|..|+-+++-+..+.+... .-++.++..|.+..+ +.+|..++.+|+-++..++
T Consensus 263 ~~i~~Lv~lL~~~-d--~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~ 339 (644)
T 2z6h_A 263 GLLGTLVQLLGSD-D--INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339 (644)
T ss_dssp HHHHHHHHHTTCS-C--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred hHHHHHHHHHcCC-C--HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCc
Confidence 5677777776533 2 2788889888888877654211 135566666666554 8999999999999987665
Q ss_pred c----------hHHHHHHHHhhcCCc-hHHHHHHHHHHHHHcCCCCc
Q 002870 684 K----------VNVMDTLSRLSHDTD-SEVAMAAVISLGLIGSGTNN 719 (872)
Q Consensus 684 ~----------~~aid~L~~l~~D~d-~~Vr~~AiiAlGlV~aGt~n 719 (872)
. ..++..|.++.++++ ..|+..|+.+++-+..+..+
T Consensus 340 ~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~ 386 (644)
T 2z6h_A 340 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 386 (644)
T ss_dssp THHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG
T ss_pred hHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH
Confidence 3 235677777777765 58999999999998877544
No 44
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.22 E-value=0.0083 Score=61.37 Aligned_cols=213 Identities=18% Similarity=0.174 Sum_probs=123.8
Q ss_pred HHhHhhhccCCCchhHHHHHHHHHHhhcCCCCCh-----hhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC------
Q 002870 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDC-----DPALALLSEYVGREDACIRIGAIMGLGISYAGTQN------ 498 (872)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~-----d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~------ 498 (872)
+..+.+-|.++++.++.-|+.+|.-+-+...... ..++..|...+.++++.++..|+..|+-...++..
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3445555677788888888888743222110000 01556777888888889999999999887654321
Q ss_pred -HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCH-H------HHHHHHHHHhhcCccccCchhHhHHHHHHHhhh
Q 002870 499 -DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE-E------VAQAIIFALMDRSESELGEPLTRLIPLGLGLLY 570 (872)
Q Consensus 499 -~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~-~------~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~ 570 (872)
....+.|...+.++ +.+++..|+.+||-+..+..+. + +++.+++.|. .. +..+.+.++.+++-+.
T Consensus 94 ~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~----~~-~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 94 DAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS----SP-NEQILQEALWALSNIA 166 (252)
T ss_dssp HTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG----CS-CHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh----CC-CHHHHHHHHHHHHHHH
Confidence 12556677777654 4567778899999885443322 1 2233333221 11 2234444444555444
Q ss_pred cCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHh
Q 002870 571 LGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLE 650 (872)
Q Consensus 571 ~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e 650 (872)
.+..+..+.+++ .| .+..|++.+.+. + +.++..|+-+++-++.+++....
T Consensus 167 ~~~~~~~~~~~~------------------------~~---~i~~L~~ll~~~-~--~~v~~~a~~~L~~l~~~~~~~~~ 216 (252)
T 4db8_A 167 SGGNEQIQAVID------------------------AG---ALPALVQLLSSP-N--EQILQEALWALSNIASGGNEQKQ 216 (252)
T ss_dssp TSCHHHHHHHHH------------------------TT---CHHHHHHGGGCS-S--HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cCChHHHHHHHH------------------------CC---CHHHHHHHHCCC-C--HHHHHHHHHHHHHHhcCCHHHHH
Confidence 333332222111 11 245566666543 2 26888888888888766652211
Q ss_pred -----HHHHHHHHHhhcCChhHHhHHHHHHhhhc
Q 002870 651 -----MAIRSLEHLLQYGEQNIRRAVPLALGLLC 679 (872)
Q Consensus 651 -----~~~~il~~L~~~~~~~VR~ga~lALGL~~ 679 (872)
.+...+..++++.++.+|..++.+|+-++
T Consensus 217 ~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 217 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 23344556678889999999999998664
No 45
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.15 E-value=0.025 Score=69.08 Aligned_cols=202 Identities=12% Similarity=0.092 Sum_probs=122.1
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHH---------HHHHHHHHHhhcCccccCchhHhHHHHHHH-hhhc
Q 002870 502 RHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEE---------VAQAIIFALMDRSESELGEPLTRLIPLGLG-LLYL 571 (872)
Q Consensus 502 ~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~---------~~e~ll~~L~~~~~~~l~e~~~r~~~lglg-Ll~~ 571 (872)
...|..++..+ +.+++..|+-+|+-+- | +.+ ++..|+..|.+. .....+.++-+|+ |...
T Consensus 497 Vp~LV~LL~s~--s~~vqe~Aa~aL~NLA-~--d~~~r~~Vv~~Gaip~Lv~LL~s~-----~~~~k~~Aa~AL~nL~~~ 566 (810)
T 3now_A 497 TTALCALAKTE--SHNSQELIARVLNAVC-G--LKELRGKVVQEGGVKALLRMALEG-----TEKGKRHATQALARIGIT 566 (810)
T ss_dssp HHHHHHHHTCC--CHHHHHHHHHHHHHHH-T--SHHHHHHHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHc-C--CHHHHHHHHHCCCHHHHHHHHccC-----CHHHHHHHHHHHHHHhcC
Confidence 45555555533 3456667888888773 3 332 233444444221 2244555555655 2222
Q ss_pred CCh----------hhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHH---------HHHHHHHhhcccCCCCccchh
Q 002870 572 GKQ----------ESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL---------KVQNLLGHCAQHHEKGEAYQG 632 (872)
Q Consensus 572 G~~----------e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~---------~i~~LL~~~~~~~~d~~~vrr 632 (872)
+.+ +.++.+++.|....+...++-+. .++.+.-+++.. .+..|..+..+ .++ .+|+
T Consensus 567 ~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl--~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s-~~~--~Vq~ 641 (810)
T 3now_A 567 INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL--MALTNLASMNESVRQRIIKEQGVSKIEYYLME-DHL--YLTR 641 (810)
T ss_dssp SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHH--HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-CCT--THHH
T ss_pred CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHH--HHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCH--HHHH
Confidence 222 23455555554322333333333 355566666533 23445555543 333 7999
Q ss_pred hhHhHhhhhhhcchhhHh-----HHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc--------hHHHHHHHHhhcCCc
Q 002870 633 PAVLGIAMVAMAEELGLE-----MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK--------VNVMDTLSRLSHDTD 699 (872)
Q Consensus 633 ~Avl~iglI~~~~~~g~e-----~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~--------~~aid~L~~l~~D~d 699 (872)
.|.-.|+-++.+++.-.. .+.+.+-.|+++.+..+|..++.||+.+++|++. ...+..|-.+..+.+
T Consensus 642 ~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d 721 (810)
T 3now_A 642 AAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS 721 (810)
T ss_dssp HHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSS
T ss_pred HHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCC
Confidence 999999999887653111 1334555677888999999999999999987543 234557778888999
Q ss_pred hHHHHHHHHHHHHHcCCCC
Q 002870 700 SEVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 700 ~~Vr~~AiiAlGlV~aGt~ 718 (872)
..++..|+.+++=+..++.
T Consensus 722 ~~vq~~A~~aL~NL~~~s~ 740 (810)
T 3now_A 722 PAVQHRGIVIILNMINAGE 740 (810)
T ss_dssp HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCH
Confidence 9999999999988877653
No 46
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.07 E-value=0.085 Score=63.56 Aligned_cols=298 Identities=11% Similarity=0.039 Sum_probs=158.3
Q ss_pred HHHHHHHhhhhccccch----hhHHhHhhhccCCCchhHHHHHHHHHHhhcCCC-CC----hhhHHHHHHhhcCCCCHHH
Q 002870 411 KMSAAASLGMILLWDVD----SGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIR-ND----CDPALALLSEYVGREDACI 481 (872)
Q Consensus 411 k~~A~aslGlI~~~~~~----~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~-~e----~d~~~~lL~~~L~~~~~~v 481 (872)
+..|...++.+-....+ .-+..+...+.+.+...|-+|+.++|.+..+.. .. .+.++..|...+.++++.+
T Consensus 348 r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~v 427 (861)
T 2bpt_A 348 SMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQV 427 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 44555555543321112 233444555566777899999999999987653 11 1235566667788889999
Q ss_pred HHHHHHHHHHHhcc--C------CCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCC----C------HHHHHHHH
Q 002870 482 RIGAIMGLGISYAG--T------QNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSC----N------EEVAQAII 543 (872)
Q Consensus 482 ~~gA~lGLGLay~G--t------~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~----n------~~~~e~ll 543 (872)
|..++.+||-.... . .-+.++..|...+.|+ .+++..|+.+++-+.-+.+ + +++++.++
T Consensus 428 r~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~ 504 (861)
T 2bpt_A 428 KETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLI 504 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 99999888855422 1 1234555555555553 5677788888887654422 1 23444444
Q ss_pred HHHhhcCccccCchhHhHHHHHHHhhhcCChhhH--------HHHHHHHhhh--------------hhhhhhhhhHHHHH
Q 002870 544 FALMDRSESELGEPLTRLIPLGLGLLYLGKQESV--------EATAEVSKTF--------------NEKIRKYCDMTLLS 601 (872)
Q Consensus 544 ~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a--------~~ll~~L~~~--------------~~~i~r~~~~~~~~ 601 (872)
..+-. .+.+..+...+.-+++-+.-..++.. +.+++.+... +.+-.+...+-+++
T Consensus 505 ~~l~~---~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 581 (861)
T 2bpt_A 505 GAANR---IDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLA 581 (861)
T ss_dssp HHHTC---SCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC---cCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHH
Confidence 44321 11123344445555554433333222 2234444321 11222333333333
Q ss_pred HhhhcCCC------HHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhc--chhh---HhHHHHHHHHHhhcCChhHHhH
Q 002870 602 CAYAGTGN------VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMA--EELG---LEMAIRSLEHLLQYGEQNIRRA 670 (872)
Q Consensus 602 lAyaGTGn------~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~--~~~g---~e~~~~il~~L~~~~~~~VR~g 670 (872)
-...+.|. ...++.+++.+.....+ .+|..+..+++.++.. +... ...++.++..+ ...++.+|..
T Consensus 582 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~--~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~~~~~~vr~~ 658 (861)
T 2bpt_A 582 AVIRKSPSSVEPVADMLMGLFFRLLEKKDSA--FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKAL-NQVDSPVSIT 658 (861)
T ss_dssp HHHHHCGGGTGGGHHHHHHHHHHHHHSTTGG--GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH-HCTTSHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHccCCCC--cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccHHHHHH
Confidence 33233333 23344455555433221 5776766666665532 2211 12233333333 5678899999
Q ss_pred HHHHHhhhccCCCc------hHHHHHHHHhhcCCc--hHHHHHHHHHHHHHcCCC
Q 002870 671 VPLALGLLCISNPK------VNVMDTLSRLSHDTD--SEVAMAAVISLGLIGSGT 717 (872)
Q Consensus 671 a~lALGL~~agt~~------~~aid~L~~l~~D~d--~~Vr~~AiiAlGlV~aGt 717 (872)
+.-++|-++-.-+. ..++..|.+...|++ ..||..|+-++|-+....
T Consensus 659 a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~ 713 (861)
T 2bpt_A 659 AVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI 713 (861)
T ss_dssp HHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHh
Confidence 88888866533332 234444455555553 789999999998776543
No 47
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.03 E-value=0.14 Score=62.46 Aligned_cols=339 Identities=15% Similarity=0.086 Sum_probs=195.3
Q ss_pred cccccCchhHHHHHHHhhhhccccchhh---------HHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhh----HHH
Q 002870 402 WLFKNKEHGKMSAAASLGMILLWDVDSG---------LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDP----ALA 468 (872)
Q Consensus 402 wl~k~~~~~k~~A~aslGlI~~~~~~~~---------l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~----~~~ 468 (872)
|+.+.....+..|+.++..|..|.++.+ +..+-+.+.+++...+--|+.++|.+..+. ...+. -..
T Consensus 255 ~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~-~~R~~I~~~gv~ 333 (810)
T 3now_A 255 KLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK-DKAKALCEQGVD 333 (810)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSH-HHHHTTHHHHHH
T ss_pred HhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCc-HHHHHHHHcCcH
Confidence 6667777788999999999998877643 344455566888899999999999975541 11111 125
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhc-cCCC-----------HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCC--
Q 002870 469 LLSEYVGREDACIRIGAIMGLGISYA-GTQN-----------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSC-- 534 (872)
Q Consensus 469 lL~~~L~~~~~~v~~gA~lGLGLay~-Gt~~-----------~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~-- 534 (872)
.|...+.+++..+|.-|+.+|.-... ++.+ +++.+.|...|.++..+.++...|+-||.-+-.+..
T Consensus 334 ~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk 413 (810)
T 3now_A 334 ILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECK 413 (810)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHH
Confidence 66677777778888888888766532 2211 234556666665442234555567777766643332
Q ss_pred -----CHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChh----------------------------------
Q 002870 535 -----NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE---------------------------------- 575 (872)
Q Consensus 535 -----n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e---------------------------------- 575 (872)
+..++..|++.|.. + +..+...+.-.++=+--|..+
T Consensus 414 ~~lv~d~g~Ip~LV~LL~s--~---d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~ 488 (810)
T 3now_A 414 EKLIEDKASIHALMDLARG--G---NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI 488 (810)
T ss_dssp HHHHHCHHHHHHHHHHHHT--T---CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHhCC--C---ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHH
Confidence 12234445554421 1 234555555666655444310
Q ss_pred -------hHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCH-------HHHHHHHHhhcccCCCCccchhhhHhHhhhh
Q 002870 576 -------SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV-------LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMV 641 (872)
Q Consensus 576 -------~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~-------~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI 641 (872)
.++.++..|.. ++|-.+.-++.+++-. +|.... -++..|++.+.+... ..|+.|+-+|+-+
T Consensus 489 ~~VveaGaVp~LV~LL~s-~s~~vqe~Aa~aL~NL-A~d~~~r~~Vv~~Gaip~Lv~LL~s~~~---~~k~~Aa~AL~nL 563 (810)
T 3now_A 489 TVLANEGITTALCALAKT-ESHNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTE---KGKRHATQALARI 563 (810)
T ss_dssp HHHHHTTHHHHHHHHHTC-CCHHHHHHHHHHHHHH-HTSHHHHHHHHHTTHHHHHHHHHHSSCH---HHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHccCCH---HHHHHHHHHHHHH
Confidence 12333433433 4455555555554433 333211 123446666654322 6788888888877
Q ss_pred hhc-chh----h---HhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch-------HHHHHHHHhhcCCchHHHHHH
Q 002870 642 AMA-EEL----G---LEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSRLSHDTDSEVAMAA 706 (872)
Q Consensus 642 ~~~-~~~----g---~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~-------~aid~L~~l~~D~d~~Vr~~A 706 (872)
+.+ +|. + .+-++.++..|.+..+...+.-+++||+-+..++... .+++.|..+..+.+..|++.|
T Consensus 564 ~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A 643 (810)
T 3now_A 564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAA 643 (810)
T ss_dssp HHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHH
T ss_pred hcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHH
Confidence 654 331 0 1234455554433334455677888888776664321 246677778778888899999
Q ss_pred HHHHHHHcCCCCch-------HHHHHHHHhhhhhccChhhHHHHHHHHhhhhcC
Q 002870 707 VISLGLIGSGTNNA-------RIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMG 753 (872)
Q Consensus 707 iiAlGlV~aGt~n~-------rv~~~lr~l~s~~~~d~~~~f~~~lAqGll~~G 753 (872)
.-+++=+..+..+- ...+.|-.|.. +.+...+-.+.-|++-+..|
T Consensus 644 ~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~--s~d~~vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 644 AQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE--DEDEETATACAGALAIITSV 695 (810)
T ss_dssp HHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHhccCcHHHHHHHhc--CCCHHHHHHHHHHHHHHhCC
Confidence 99988887654320 11222222222 35666777777777777765
No 48
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.95 E-value=0.028 Score=71.50 Aligned_cols=248 Identities=11% Similarity=0.060 Sum_probs=137.0
Q ss_pred HHhHhhhccCCCchhHHHHHHHHHHhhcCC-C--CC--hhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC---HHH
Q 002870 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGI-R--ND--CDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN---DQI 501 (872)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~G~-~--~e--~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~---~~i 501 (872)
+..+-.-+.+.++.+|.-|+..|.-.-... . ++ .+.++..|.+.+.+++..+|..|+..||-..-+... +.+
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i 87 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETI 87 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 333333356777788887777665433211 1 10 123566667777777888888888888876654432 234
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHH--------HHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCC
Q 002870 502 RHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEE--------VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGK 573 (872)
Q Consensus 502 ~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~--------~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~ 573 (872)
.+.|...+.|+. .+++.+|+.+||.+.-.-+... ....++..|...
T Consensus 88 ~~~Ll~~l~d~~--~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~------------------------ 141 (1230)
T 1u6g_C 88 VDTLCTNMLSDK--EQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSA------------------------ 141 (1230)
T ss_dssp HHHHHHHTTCSS--SHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHhcCCc--HHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHH------------------------
Confidence 444444444542 3556677788877654444331 233444433322
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhHHHHHHh--hhcCC----CHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchh
Q 002870 574 QESVEATAEVSKTFNEKIRKYCDMTLLSCA--YAGTG----NVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEEL 647 (872)
Q Consensus 574 ~e~a~~ll~~L~~~~~~i~r~~~~~~~~lA--yaGTG----n~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~ 647 (872)
+...+++-.|.+++.+++-. ..|.. -...+..|++.+.+ .+ ..||..|+-+++.++..-+.
T Consensus 142 ----------l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~-~~--~~vR~~a~~al~~l~~~~~~ 208 (1230)
T 1u6g_C 142 ----------IAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS-PR--LAVRKRTIIALGHLVMSCGN 208 (1230)
T ss_dssp ----------HSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGC-SS--HHHHHHHHHHHHHHTTTC--
T ss_pred ----------HcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcC-Cc--HHHHHHHHHHHHHHHHhcCH
Confidence 11111112222222111111 01110 12344555555532 22 26888888888887654321
Q ss_pred --hHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc------hHHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 002870 648 --GLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716 (872)
Q Consensus 648 --g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~------~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aG 716 (872)
-...++.++..|.+..++.+|.+++-++|.+....|. .+++..+....+|.++.||..|+-+++.+..-
T Consensus 209 ~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 209 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 0123555666665554567899999998887654332 56788888888899999999999888877653
No 49
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.66 E-value=0.18 Score=59.74 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=61.9
Q ss_pred hHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHH----HHHHhhc-CCchHHHHHHHHHHHHHcCCCCchHHHH
Q 002870 650 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMD----TLSRLSH-DTDSEVAMAAVISLGLIGSGTNNARIAG 724 (872)
Q Consensus 650 e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid----~L~~l~~-D~d~~Vr~~AiiAlGlV~aGt~n~rv~~ 724 (872)
.++...+..++.+.++++||.+.-+|..+....|+.+++. .+..... |+|..||.-|+--+--+. +...+..
T Consensus 328 ~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~ 404 (621)
T 2vgl_A 328 VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQ 404 (621)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHH
Confidence 4566667777778899999999999999987776554443 2333345 899999987765544442 3334566
Q ss_pred HHHHhhhhhc-cChhhHHHHHHHHhhh
Q 002870 725 MLRNLSSYYY-KDANLLFCVRIAQGLV 750 (872)
Q Consensus 725 ~lr~l~s~~~-~d~~~~f~~~lAqGll 750 (872)
++++|..|.. -|+..+--+.-+.|.+
T Consensus 405 Iv~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 405 IVAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 6666666643 2444333344444444
No 50
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.63 E-value=1.3 Score=50.28 Aligned_cols=263 Identities=13% Similarity=0.059 Sum_probs=122.9
Q ss_pred HHhhhhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhcc
Q 002870 416 ASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAG 495 (872)
Q Consensus 416 aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~G 495 (872)
.+.+....|+.++|+..+.+.+.........-..++.+....|.. +.+..++...+....... .+...+|.+|..
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 385 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK---NKLYLISNDLVDRHPEKA--VTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCH---HHHHHHHHHHHHHCTTSH--HHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhhCcccH--HHHHHHHHHHHH
Confidence 334445567777777777665532211222222233333333432 336666555543211111 222334444444
Q ss_pred CCC-HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCC
Q 002870 496 TQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGK 573 (872)
Q Consensus 496 t~~-~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~ 573 (872)
.++ ++..+.+...+. ++. ..+ +-..+|.++.-.++.+-+..+++.+.+..+. ...-...+|.++...|+
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQ-FGP----AWIGFAHSFAIEGEHDQAISAYTTAARLFQG----THLPYLFLGMQHMQLGN 456 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT----CSHHHHHHHHHHHHHTC
T ss_pred hccHHHHHHHHHHHHHhCCC-CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHcCC
Confidence 443 234444444432 221 122 3334455555555555444555444432221 12333445666777777
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhccc----CCCCcc--chhhhHhHhhhhhhcchh
Q 002870 574 QESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQH----HEKGEA--YQGPAVLGIAMVAMAEEL 647 (872)
Q Consensus 574 ~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~----~~d~~~--vrr~Avl~iglI~~~~~~ 647 (872)
-+++...++.+....... ......++..|...|+.....+++.-+.+. ..+ ++ ......++.++...|+.
T Consensus 457 ~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~g~~- 532 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQYD--PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN-EKPWAATWANLGHAYRKLKMY- 532 (597)
T ss_dssp HHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-SGGGHHHHHHHHHHHHHTTCH-
T ss_pred HHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc-hhhHHHHHHHHHHHHHHhcCH-
Confidence 777777776655432211 122345666777778765444444333221 101 12 34445555566666665
Q ss_pred hHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-hHHHHHHHHhh-cCCch
Q 002870 648 GLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDS 700 (872)
Q Consensus 648 g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-~~aid~L~~l~-~D~d~ 700 (872)
+.+.+.++...+....+.. +-..+|.++...|+ .++++.+.+.. -+|++
T Consensus 533 --~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 533 --DAAIDALNQGLLLSTNDAN--VHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp --HHHHHHHHHHHHHSSCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred --HHHHHHHHHHHHhCCCChH--HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 7777777776654322222 22334444444444 35666666553 35554
No 51
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.43 E-value=0.49 Score=56.98 Aligned_cols=300 Identities=15% Similarity=0.052 Sum_probs=154.7
Q ss_pred hHHHHHHHhhhhcccc----chhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCC-h----hhHHHHHHhhcCCCCHH
Q 002870 410 GKMSAAASLGMILLWD----VDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRND-C----DPALALLSEYVGREDAC 480 (872)
Q Consensus 410 ~k~~A~aslGlI~~~~----~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e-~----d~~~~lL~~~L~~~~~~ 480 (872)
.+..|..+++.+-... ....+..+...+.+.+..+|.+|+.++|.+..+...+ . ..++..|...+.+++..
T Consensus 344 ~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~ 423 (876)
T 1qgr_A 344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423 (876)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 3445555565544322 2223445556666778889999999999998765411 1 12455666778888999
Q ss_pred HHHHHHHHHHHHhccCCC--------HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCC------------------
Q 002870 481 IRIGAIMGLGISYAGTQN--------DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSC------------------ 534 (872)
Q Consensus 481 v~~gA~lGLGLay~Gt~~--------~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~------------------ 534 (872)
+|..|+.+||-....... +.++..|...+.|+ ..+...|+.+|+.+.-..+
T Consensus 424 vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~ 500 (876)
T 1qgr_A 424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS 500 (876)
T ss_dssp HHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSST
T ss_pred HHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhccccccccccccchhhh
Confidence 999999999976543221 24455555555553 4556677777777653211
Q ss_pred --CHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhh--cCCh------hhHHHHHHHHhh----------hhh----h
Q 002870 535 --NEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLY--LGKQ------ESVEATAEVSKT----------FNE----K 590 (872)
Q Consensus 535 --n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~--~G~~------e~a~~ll~~L~~----------~~~----~ 590 (872)
-+.++..+++.+. ..+.+ .......+.-+++.+. .|.. .-.+.+++.+.. ..+ +
T Consensus 501 ~~~~~il~~L~~~l~-~~~~~-~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~ 578 (876)
T 1qgr_A 501 SSFELIVQKLLETTD-RPDGH-QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFN 578 (876)
T ss_dssp TTHHHHHHHHHHHTT-SCSSC-STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHH
T ss_pred HhHHHHHHHHHHHHh-CcCcc-hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHH
Confidence 1233444444332 11111 1122222333343222 2321 112223333332 112 1
Q ss_pred hhhhhhHHHHHHhhhcCC-C------HHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhc--chhh--HhHHHHHHHHH
Q 002870 591 IRKYCDMTLLSCAYAGTG-N------VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMA--EELG--LEMAIRSLEHL 659 (872)
Q Consensus 591 i~r~~~~~~~~lAyaGTG-n------~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~--~~~g--~e~~~~il~~L 659 (872)
-.+...+.+++-...+.| . ...+..|+..+...... ..+|..++..++.++-. +... .+.+...+...
T Consensus 579 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~ 657 (876)
T 1qgr_A 579 DLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGS-GGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG 657 (876)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----C-CHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 122222223322223344 2 23445555555433210 14666666666666542 2111 12233344444
Q ss_pred hhcC-ChhHHhHHHHHHhhhccCCCc------hHHHHHHHHhhcC--CchHHHHHHHHHHHHHcC
Q 002870 660 LQYG-EQNIRRAVPLALGLLCISNPK------VNVMDTLSRLSHD--TDSEVAMAAVISLGLIGS 715 (872)
Q Consensus 660 ~~~~-~~~VR~ga~lALGL~~agt~~------~~aid~L~~l~~D--~d~~Vr~~AiiAlGlV~a 715 (872)
+++. ++.||..+.-++|-++..-+. .+++..|.+...+ .+..+|..++.++|-+..
T Consensus 658 l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 658 LKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH
Confidence 4555 899999999999887643332 3555655555544 466799999999888754
No 52
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.16 E-value=0.31 Score=57.77 Aligned_cols=293 Identities=12% Similarity=0.081 Sum_probs=162.6
Q ss_pred hHHHHHHHhhhhccccchhh---HHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhc--CCCCHHHHHH
Q 002870 410 GKMSAAASLGMILLWDVDSG---LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYV--GREDACIRIG 484 (872)
Q Consensus 410 ~k~~A~aslGlI~~~~~~~~---l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L--~~~~~~v~~g 484 (872)
-|-.+-.++...-..+.+.. .+.|.+=+.++++++++-|+-++|.+.... -.+.+...+...+ .+.++++|--
T Consensus 90 ~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e--~~~~l~~~v~~~l~~~d~~~~VRK~ 167 (621)
T 2vgl_A 90 EKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSRE--MAEAFAGEIPKILVAGDTMDSVKQS 167 (621)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH--HHHHHTTHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHH--HHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34444444555444555543 344555667899999999999999984311 1122334445567 7889999999
Q ss_pred HHHHHHHHhccCCC----HHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHH----HHHHHHHH---hhcCcc-
Q 002870 485 AIMGLGISYAGTQN----DQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEV----AQAIIFAL---MDRSES- 552 (872)
Q Consensus 485 A~lGLGLay~Gt~~----~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~----~e~ll~~L---~~~~~~- 552 (872)
|++++.-+|--..+ +++.+.|...|.|.+ .-+..+|..+++-+.- .+++. +..+++.| +...+.
T Consensus 168 A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d--~~V~~~a~~~l~~i~~--~~~~~~~~~~~~~~~~L~~ll~~~~~~ 243 (621)
T 2vgl_A 168 AALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQH--LGVVTAATSLITTLAQ--KNPEEFKTSVSLAVSRLSRIVTSASTD 243 (621)
T ss_dssp HHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSC--HHHHHHHHHHHHHHHH--HCHHHHTTHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHhChhhcCchhHHHHHHHHhCCCC--ccHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999988863221 257788888887653 3455555555665532 23331 22222222 111111
Q ss_pred -c------cCchhHhHHHHHHHhhhcCCh---hhHHHHHHHHhhhh-----hh------------hhhhhhHHHHHHhhh
Q 002870 553 -E------LGEPLTRLIPLGLGLLYLGKQ---ESVEATAEVSKTFN-----EK------------IRKYCDMTLLSCAYA 605 (872)
Q Consensus 553 -~------l~e~~~r~~~lglgLl~~G~~---e~a~~ll~~L~~~~-----~~------------i~r~~~~~~~~lAya 605 (872)
+ ..++|.+...+-+ |..+++. +..+.+.+.+...= .| -.-+.++ -.+.+.
T Consensus 244 ~~~~~~~~~~~~w~qi~il~l-l~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~--~~i~~l 320 (621)
T 2vgl_A 244 LQDYTYYFVPAPWLSVKLLRL-LQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAI--SLIIHH 320 (621)
T ss_dssp CSTTEETTEESHHHHHHHHHH-GGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHH--HHHHHH
T ss_pred ccchhhcCCCCchHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHH--HHHHhc
Confidence 0 1257877665543 3345543 33343433322110 01 1111111 112222
Q ss_pred cCCCH----HHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchh---hHhHHHHHHHHHhhcCChhHHhHHHHHHhhh
Q 002870 606 GTGNV----LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEEL---GLEMAIRSLEHLLQYGEQNIRRAVPLALGLL 678 (872)
Q Consensus 606 GTGn~----~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~---g~e~~~~il~~L~~~~~~~VR~ga~lALGL~ 678 (872)
+ .+. .++..|..++.+. + +++|..++-.+..+....|. -..-...++..|..+.|+.||+-+.=.+--+
T Consensus 321 ~-~~~~~~~~~~~~L~~~L~~~-~--~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l 396 (621)
T 2vgl_A 321 D-SEPNLLVRACNQLGQFLQHR-E--TNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAM 396 (621)
T ss_dssp C-CCHHHHHHHHHHHHHHSSCS-C--HHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHHhcCC-C--cchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHH
Confidence 3 232 3455555665422 2 37898999999998877641 0111222333332277889987655444444
Q ss_pred ccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcC
Q 002870 679 CISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGS 715 (872)
Q Consensus 679 ~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~a 715 (872)
+-.++-..+++.|..+..+.|..+|..++.++|.+..
T Consensus 397 ~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 397 CDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred cChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4334445677888888889999999888888887653
No 53
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.12 E-value=1.1 Score=50.56 Aligned_cols=275 Identities=12% Similarity=0.029 Sum_probs=146.6
Q ss_pred HhHhhhccCCCchhHHHHHHHHHHhhcCCCCChh------hHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC-CH-HH-
Q 002870 431 AQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCD------PALALLSEYVGREDACIRIGAIMGLGISYAGTQ-ND-QI- 501 (872)
Q Consensus 431 ~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d------~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~-~~-~i- 501 (872)
..+-.+|.++++.++..|+.+|+-+..+.. +.. -++..|...|.++++.++..|+-+|+-...++. +. .+
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCS-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345556777778888888888887654321 111 134567777888888899999999998776522 11 22
Q ss_pred ----HHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHH-----HHHHHHHHHhh------cCcc-c----cCchhHhH
Q 002870 502 ----RHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEE-----VAQAIIFALMD------RSES-E----LGEPLTRL 561 (872)
Q Consensus 502 ----~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~-----~~e~ll~~L~~------~~~~-~----l~e~~~r~ 561 (872)
...|...|.++ .+.+++..|+-+|+-+-.+..+.+ ++..+++.|.. .++. + ....+.|-
T Consensus 84 ~~G~i~~Lv~lL~~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 84 RQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HcCCHHHHHHHHhhC-CCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 34566667622 145666678888988876654443 33444554421 0010 0 12344455
Q ss_pred HHHHHHhhhcCChh----------hHHHHHHHHhh------hhhhhhhhhhHHHHHHhhh-----cCCCHHHHHHHHHhh
Q 002870 562 IPLGLGLLYLGKQE----------SVEATAEVSKT------FNEKIRKYCDMTLLSCAYA-----GTGNVLKVQNLLGHC 620 (872)
Q Consensus 562 ~~lglgLl~~G~~e----------~a~~ll~~L~~------~~~~i~r~~~~~~~~lAya-----GTGn~~~i~~LL~~~ 620 (872)
++-+|.=+.-+ ++ .++.+++.+.. .++.....+......++|. .+|... +...
T Consensus 163 a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~-----~~~~ 236 (457)
T 1xm9_A 163 ATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ-----LEYN 236 (457)
T ss_dssp HHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHH-----HHHT
T ss_pred HHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhh-----cccc
Confidence 55455433332 22 22333333332 1112222222222333321 011100 0000
Q ss_pred cccC-CCCccchhhhH---------------------hHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhh
Q 002870 621 AQHH-EKGEAYQGPAV---------------------LGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLL 678 (872)
Q Consensus 621 ~~~~-~d~~~vrr~Av---------------------l~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~ 678 (872)
.... ...+.+..... -++..+ -++ ..++.++..|.+..++.++.+++.||+-+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~---~~l~~L~~lL~~~~~~~~~e~a~~aL~nl 311 (457)
T 1xm9_A 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL--YHS---DAIRTYLNLMGKSKKDATLEACAGALQNL 311 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGG--GSH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhccchhhhhccccCCccccccCchHHHHH--hCc---chHHHHHHHHhhcCCHHHHHHHHHHHHHh
Confidence 0000 00000000000 001111 111 34566677777778899999999999999
Q ss_pred ccCCCch------------HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 002870 679 CISNPKV------------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 679 ~agt~~~------------~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~ 718 (872)
++|++.. .++..|-++.++.+..|+..|+.++.-+..+..
T Consensus 312 ~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp TTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred ccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 9998652 234678888999999999999999998866543
No 54
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.11 E-value=1.3 Score=52.06 Aligned_cols=118 Identities=14% Similarity=0.053 Sum_probs=66.7
Q ss_pred HHHHHHHhhhhccc------cchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChh-----hHHHHHHhhcCCCCH
Q 002870 411 KMSAAASLGMILLW------DVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCD-----PALALLSEYVGREDA 479 (872)
Q Consensus 411 k~~A~aslGlI~~~------~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d-----~~~~lL~~~L~~~~~ 479 (872)
+-++.++|.-++.. .-++++..+-.+|.++++.++.-|..+|..+..+...... -++..|...|.+++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~ 104 (584)
T 3l6x_A 25 ERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK 104 (584)
T ss_dssp ---------------CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH
T ss_pred ccchHHHHHHHHhcCCCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH
Confidence 34667777777652 1234677777888888888888888888877654311000 145677788889999
Q ss_pred HHHHHHHHHHHHHhccCC--CH------HHHHHHHHHhcCCCCchHHHHHHHHHHHhH
Q 002870 480 CIRIGAIMGLGISYAGTQ--ND------QIRHKLSTILNDAKSPLDVIAFSAISLGLI 529 (872)
Q Consensus 480 ~v~~gA~lGLGLay~Gt~--~~------~i~e~L~~~L~d~~~~~e~~~~AaLALGLi 529 (872)
.++..|+-+|+-+..|+. +. ..+..|..+|.+.. +.+++..|+-+|.-+
T Consensus 105 ~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~-~~~~~e~aa~aL~nL 161 (584)
T 3l6x_A 105 EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR-DMDLTEVITGTLWNL 161 (584)
T ss_dssp HHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 999999999999877632 22 13455666665321 334444555555544
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.09 E-value=0.54 Score=51.79 Aligned_cols=240 Identities=8% Similarity=-0.033 Sum_probs=135.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcC--------------C
Q 002870 468 ALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVG--------------S 533 (872)
Q Consensus 468 ~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lG--------------s 533 (872)
.+|.. ..+++..+|..|---|.-.. .+..++....|..++.+++.+.++..+|+..|.-..-. .
T Consensus 5 ~~L~~-~~s~d~~~r~~Ae~~L~~~~-~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~ 82 (462)
T 1ibr_B 5 TILEK-TVSPDRLELEAAQKFLERAA-VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (462)
T ss_dssp HHHHH-TTCSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHHH-hcCCCHHHHHHHHHHHHHHH-hhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhc
Confidence 34443 33556677777766666532 22235666777777766545667777888888876321 1
Q ss_pred CCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhc------CChhhHHHHHHHHhhhh-hhhhhhhhHHHHHHhhhc
Q 002870 534 CNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYL------GKQESVEATAEVSKTFN-EKIRKYCDMTLLSCAYAG 606 (872)
Q Consensus 534 ~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~------G~~e~a~~ll~~L~~~~-~~i~r~~~~~~~~lAyaG 606 (872)
-+++.-+.+.+.|+..-..+ ...+ +.++.+++-+.- .-++-.+.+++.+.... ++..|.++..+++--.--
T Consensus 83 l~~~~~~~ik~~ll~~l~~~-~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (462)
T 1ibr_B 83 IDANARREVKNYVLQTLGTE-TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (462)
T ss_dssp SCHHHHHHHHHHHHHHTTCC-CSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCC-Cchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 23444444444444321111 2234 444444432221 12345566666665432 677788777666543211
Q ss_pred C-CC------HHHHHHHHHhhcccC-CCCccchhhhHhHhhhhhh--cchhh----HhHHHHHHHHHhhcCChhHHhHHH
Q 002870 607 T-GN------VLKVQNLLGHCAQHH-EKGEAYQGPAVLGIAMVAM--AEELG----LEMAIRSLEHLLQYGEQNIRRAVP 672 (872)
Q Consensus 607 T-Gn------~~~i~~LL~~~~~~~-~d~~~vrr~Avl~iglI~~--~~~~g----~e~~~~il~~L~~~~~~~VR~ga~ 672 (872)
. +. ...++.+++.+.+.. + ..||..|+-+++-+.. .+... ...+.+.+..+..+.++.+|.+++
T Consensus 161 ~~~~~~~~~~~~ll~~l~~~l~~~~~~--~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~ 238 (462)
T 1ibr_B 161 IDPEQLQDKSNEILTAIIQGMRKEEPS--NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (462)
T ss_dssp SCGGGTGGGHHHHHHHHHHHHSTTCCC--HHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred CCchhhHhHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 1 11 234455666654431 2 2788888877765321 11110 022344555566778899999999
Q ss_pred HHHhhhccCCCc------h-HHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 002870 673 LALGLLCISNPK------V-NVMDTLSRLSHDTDSEVAMAAVISLGLI 713 (872)
Q Consensus 673 lALGL~~agt~~------~-~aid~L~~l~~D~d~~Vr~~AiiAlGlV 713 (872)
-+++.+.-..+. . .++..+....+|.++.||..|+-.++-+
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp HHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 999877533222 2 6788777778899999998887666555
No 56
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.24 Score=51.72 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=54.8
Q ss_pred HHHHHHhhcCChhHHhHHHHHHhhhccCCC----------chHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHH
Q 002870 654 RSLEHLLQYGEQNIRRAVPLALGLLCISNP----------KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIA 723 (872)
Q Consensus 654 ~il~~L~~~~~~~VR~ga~lALGL~~agt~----------~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~ 723 (872)
+++. .+++.+|.+|.++.-.++-+...++ ...++..|.++++|++..||..|+-++|.++.--++..+.
T Consensus 150 ~l~~-~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~ 228 (249)
T 2qk1_A 150 DILE-HMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFV 228 (249)
T ss_dssp HHHH-HTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGH
T ss_pred HHHH-HHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 3443 3455688888888888877764444 2578888999999999999999999999987433444466
Q ss_pred HHHHHh
Q 002870 724 GMLRNL 729 (872)
Q Consensus 724 ~~lr~l 729 (872)
.++..|
T Consensus 229 p~l~~L 234 (249)
T 2qk1_A 229 KTLEHL 234 (249)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 666654
No 57
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=95.75 E-value=1.1 Score=52.57 Aligned_cols=270 Identities=16% Similarity=0.082 Sum_probs=140.3
Q ss_pred HHHHHHHHHhhcC---CCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC--HH-----HHHHHHHHhcCCCCc
Q 002870 446 AGALLGVGIVNCG---IRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN--DQ-----IRHKLSTILNDAKSP 515 (872)
Q Consensus 446 ~GAllaLGli~~G---~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~--~~-----i~e~L~~~L~d~~~~ 515 (872)
-|++..|.-+..+ -..-.++.+..|...|.++++.++..|+..|.....++.. .. .+..|...|... +
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~--~ 103 (584)
T 3l6x_A 26 RGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP--K 103 (584)
T ss_dssp --------------CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS--S
T ss_pred cchHHHHHHHHhcCCCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC--C
Confidence 3666666655442 1111235677788889888888998888888776654321 12 335566666543 4
Q ss_pred hHHHHHHHHHHHhHhcCCC--CHH------HHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCCh-------hhHHHH
Q 002870 516 LDVIAFSAISLGLIYVGSC--NEE------VAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQ-------ESVEAT 580 (872)
Q Consensus 516 ~e~~~~AaLALGLi~lGs~--n~~------~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~-------e~a~~l 580 (872)
.+++..|+-+|+-+-.|+. +.. ++..|++.|.... .....+.++-+|.-+-.... +.++.+
T Consensus 104 ~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~----~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~L 179 (584)
T 3l6x_A 104 KEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR----DMDLTEVITGTLWNLSSHDSIKMEIVDHALHAL 179 (584)
T ss_dssp HHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCC----SHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCC----CHHHHHHHHHHHHHHhCCchhhHHHHhccHHHH
Confidence 6777889999999977632 221 3556666554211 12233333323321111111 123334
Q ss_pred HHHHhh-----------------hhh-hhhhhhhHHHHHHhhhcCCCHH-------HHHHHHHhhccc---CCCCccchh
Q 002870 581 AEVSKT-----------------FNE-KIRKYCDMTLLSCAYAGTGNVL-------KVQNLLGHCAQH---HEKGEAYQG 632 (872)
Q Consensus 581 l~~L~~-----------------~~~-~i~r~~~~~~~~lAyaGTGn~~-------~i~~LL~~~~~~---~~d~~~vrr 632 (872)
++.+.. ..+ .+...+....-.|+-.+..+.. .|..|++++.+. .+.+...+.
T Consensus 180 v~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~e 259 (584)
T 3l6x_A 180 TDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVE 259 (584)
T ss_dssp HHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHH
T ss_pred HHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHH
Confidence 443310 001 1222222222333321111111 123456665432 111113445
Q ss_pred hhHhHhhhhhhc-------------------------chhhHh-----HHHH-HHHHHhhcCChhHHhHHHHHHhhhccC
Q 002870 633 PAVLGIAMVAMA-------------------------EELGLE-----MAIR-SLEHLLQYGEQNIRRAVPLALGLLCIS 681 (872)
Q Consensus 633 ~Avl~iglI~~~-------------------------~~~g~e-----~~~~-il~~L~~~~~~~VR~ga~lALGL~~ag 681 (872)
.|+-.|.-++++ ++.|.+ .+.+ ++..|-++.++.++..++.||.-+|+|
T Consensus 260 nav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag 339 (584)
T 3l6x_A 260 NCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAG 339 (584)
T ss_dssp HHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 555555444433 111221 2233 344444567899999999999999998
Q ss_pred CCc-----------hHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchH
Q 002870 682 NPK-----------VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNAR 721 (872)
Q Consensus 682 t~~-----------~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~r 721 (872)
++. ..++..|.++.+.++..|+..|+-|++-+..+..|-.
T Consensus 340 ~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~ 390 (584)
T 3l6x_A 340 RWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKE 390 (584)
T ss_dssp CSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHH
T ss_pred CccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHH
Confidence 742 2456778888999999999999999999988887643
No 58
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.70 E-value=0.042 Score=59.23 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=90.2
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCH---------HHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhh
Q 002870 578 EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNV---------LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG 648 (872)
Q Consensus 578 ~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~---------~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g 648 (872)
+.++..+...+++-.|..++.++|-. -++|. .++..|++.+.++.+. .+|+.|+-+|+-+.-+.+.+
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~i--a~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~--~v~~~A~~ALsnl~~~~~~~ 159 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTC--SQNVAAIQEQVLGLGALRKLLRLLDRDACD--TVRVKALFAISCLVREQEAG 159 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHH--HTTCHHHHHHHHHTTHHHHHHHHHHHCSCH--HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH--HhCCHHHHHHHHHCCCHHHHHHHHccCCCH--HHHHHHHHHHHHHHcCCcHH
Confidence 34444122334555555555554433 22332 2455677777654333 78999999999888776533
Q ss_pred Hh-----HHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch-------HHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 002870 649 LE-----MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716 (872)
Q Consensus 649 ~e-----~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~-------~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aG 716 (872)
.+ .....+-.++++.++.+|.-+++||+-++.+++.. .++..|-.+...++..|+..|+-+++-+..+
T Consensus 160 ~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 160 LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 22 23335566678889999999999999888876532 3566777788888899999999999888777
Q ss_pred C
Q 002870 717 T 717 (872)
Q Consensus 717 t 717 (872)
.
T Consensus 240 ~ 240 (296)
T 1xqr_A 240 F 240 (296)
T ss_dssp C
T ss_pred C
Confidence 3
No 59
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.38 E-value=0.081 Score=54.28 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=67.9
Q ss_pred HHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCC-Cc-------
Q 002870 613 VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISN-PK------- 684 (872)
Q Consensus 613 i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt-~~------- 684 (872)
+..++..+.+. +. .||.++.-++.-++-.-+. +.+...+...+++.+|.+|..+.-.++-+.... +.
T Consensus 100 lp~ll~~l~d~-~~--~vr~~a~~aL~~~~~~~~~--~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 100 VPSLLEKFKEK-KP--NVVTALREAIDAIYASTSL--EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHGGGCC-CH--HHHHHHHHHHHHHHTTSCH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHcCC-CH--HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 44555555432 22 6777777776655543332 333344444456679999999999999854332 22
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 002870 685 VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 719 (872)
Q Consensus 685 ~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n 719 (872)
..++..|.++.+|++..||..|+-++|.++.--++
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 25677788889999999999999999998754444
No 60
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.37 E-value=1.2 Score=50.59 Aligned_cols=216 Identities=7% Similarity=-0.022 Sum_probs=116.8
Q ss_pred HHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHH
Q 002870 522 SAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLS 601 (872)
Q Consensus 522 AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~ 601 (872)
+-..+|.++.-.++.+.+..+++.+.+..+. ...-...++.++...|+.+++..+++.+...... .......++
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~ 380 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPY----NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE--KAVTWLAVG 380 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--SHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc--cHHHHHHHH
Confidence 4556777777777776666666655443222 1222344566677888888888777766543211 112334577
Q ss_pred HhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccC
Q 002870 602 CAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCIS 681 (872)
Q Consensus 602 lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~ag 681 (872)
.+|...|+.....+++.-+.+...+ ++.....++.++...|+. +.+.+.+.........+...... +|.++.-
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~--l~~~~~~ 453 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQ--FGPAWIGFAHSFAIEGEH---DQAISAYTTAARLFQGTHLPYLF--LGMQHMQ 453 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHTTTTCSHHHHH--HHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCccchHHHHH--HHHHHHH
Confidence 8889999987666665544332111 444555666677777776 88888888876654323322222 3333333
Q ss_pred CCc-hHHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCCc-hHHHHHHHHhhhhh---ccChh--hHHHHHHHHhhhhcC
Q 002870 682 NPK-VNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTNN-ARIAGMLRNLSSYY---YKDAN--LLFCVRIAQGLVHMG 753 (872)
Q Consensus 682 t~~-~~aid~L~~l~~-D~d~~Vr~~AiiAlGlV~aGt~n-~rv~~~lr~l~s~~---~~d~~--~~f~~~lAqGll~~G 753 (872)
.++ .++++.+.++.. ++++.. +...+|.+....++ .+...++++..... ..+|. ...-..++......|
T Consensus 454 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALFQYDPL---LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 333 456677776643 444322 23455555555554 24445555544432 22555 333334444444443
No 61
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.00 E-value=0.93 Score=47.16 Aligned_cols=174 Identities=11% Similarity=0.078 Sum_probs=108.4
Q ss_pred HHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhh
Q 002870 564 LGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAM 643 (872)
Q Consensus 564 lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~ 643 (872)
.+..+.--...+..-.+...|-..+..-.|+-++.+++-+ +-+..+...|......|.+= .||-.+..+++=++.
T Consensus 59 ~a~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~---~~~~~~L~~ir~~va~D~~W--rVre~lA~a~~~~~~ 133 (240)
T 3l9t_A 59 RALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL---SKDKEILIFMRDEVSKDNNW--RVQEVLAKAFDEFCK 133 (240)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT---TTSHHHHHHHHHTGGGCSCH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc---cCcHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHH
Confidence 3444444444566667777787777777888888765544 44444444444423333221 356566666666664
Q ss_pred -cchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhc----cCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 002870 644 -AEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLC----ISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 644 -~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~----agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~ 718 (872)
..| +.+...+...+++.|++||+.+...+=.-+ .-+.-..++..|.++..|++.+||.+ +|-.+=...-.
T Consensus 134 ~~~p---e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKS--Van~LrD~SK~ 208 (240)
T 3l9t_A 134 KIEY---KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKS--VGNALRDISKK 208 (240)
T ss_dssp HHCT---TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHH--HHHHHHHHHTT
T ss_pred hcCH---HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHH--HHHHHHHHhhh
Confidence 445 666778889999999999999988763211 22333457788999999999999974 33333333333
Q ss_pred ch-HHHHHHHHhhhhhccChhhHHHHHHHHhhh
Q 002870 719 NA-RIAGMLRNLSSYYYKDANLLFCVRIAQGLV 750 (872)
Q Consensus 719 n~-rv~~~lr~l~s~~~~d~~~~f~~~lAqGll 750 (872)
|| .|..++.+ ....+|.+.+.++.|.-.+
T Consensus 209 ~Pd~V~~~~~~---w~~~~~~~~~i~k~A~k~l 238 (240)
T 3l9t_A 209 FPDLVKIELKN---WKLESKEINQVYKLASKFI 238 (240)
T ss_dssp CHHHHHHHHHT---CCCCSHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHH---hhccCHhHHHHHHHHHhhc
Confidence 43 34555544 2245788888888876443
No 62
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=94.61 E-value=5 Score=45.14 Aligned_cols=309 Identities=10% Similarity=0.023 Sum_probs=154.9
Q ss_pred hhHHHHHHHhhhhccccch--------hhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhh-----HHHHHHhhcC
Q 002870 409 HGKMSAAASLGMILLWDVD--------SGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDP-----ALALLSEYVG 475 (872)
Q Consensus 409 ~~k~~A~aslGlI~~~~~~--------~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~-----~~~lL~~~L~ 475 (872)
..++.|+.+++-+-.++.+ .++..|-..|.++++.++..|+-+|+.+..++...... ++..|...|.
T Consensus 17 ~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~ 96 (457)
T 1xm9_A 17 KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLR 96 (457)
T ss_dssp HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Confidence 4677777777776544321 24566777888888899999999999887752110011 2456667777
Q ss_pred -CCCHHHHHHHHHHHHHHhccCCCHH-----HHHHHHHHhc--------CCC------CchHHHHHHHHHHHhHhcCCCC
Q 002870 476 -REDACIRIGAIMGLGISYAGTQNDQ-----IRHKLSTILN--------DAK------SPLDVIAFSAISLGLIYVGSCN 535 (872)
Q Consensus 476 -~~~~~v~~gA~lGLGLay~Gt~~~~-----i~e~L~~~L~--------d~~------~~~e~~~~AaLALGLi~lGs~n 535 (872)
+++..++.-|+-.|+-...+....+ ....|...+. ++. ...++..-|+-+|+-+-.+..+
T Consensus 97 ~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~ 176 (457)
T 1xm9_A 97 RTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176 (457)
T ss_dssp TCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHH
Confidence 6678888888888887766644333 3445555552 110 1233444677777766432100
Q ss_pred -------HHHHHHHHHHHhhcC-ccccCchhHhHHHHHHHhhhcCChhhH---HHHHHHHhhhhhhhhhhhhHHHH----
Q 002870 536 -------EEVAQAIIFALMDRS-ESELGEPLTRLIPLGLGLLYLGKQESV---EATAEVSKTFNEKIRKYCDMTLL---- 600 (872)
Q Consensus 536 -------~~~~e~ll~~L~~~~-~~~l~e~~~r~~~lglgLl~~G~~e~a---~~ll~~L~~~~~~i~r~~~~~~~---- 600 (872)
+.++..|++.|.... .....++...-+...+.-+.+..+... ...+..............+++..
T Consensus 177 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (457)
T 1xm9_A 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDK 256 (457)
T ss_dssp HHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-------------------
T ss_pred HHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchh
Confidence 023344444443210 000012333222222222221111000 00000000000000000000000
Q ss_pred ----H--Hh-------hhcC---CCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcch-----h-----hHhHHHH
Q 002870 601 ----S--CA-------YAGT---GNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEE-----L-----GLEMAIR 654 (872)
Q Consensus 601 ----~--lA-------yaGT---Gn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~-----~-----g~e~~~~ 654 (872)
+ +. .-|+ -+..+++.|++...+..++ .++..|+-+|+-+..++. + ..+.+..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~--~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~ 334 (457)
T 1xm9_A 257 MMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD--ATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLP 334 (457)
T ss_dssp ---------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHH
T ss_pred hhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCH--HHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCch
Confidence 0 00 0011 1456677676666544333 677777777766654421 1 1244445
Q ss_pred HHHHHhhcCChhHHhHHHHHHhhhccCCCch-----HHHHHHHHhhcCCc------hHHHHHHHHHHHHHcCCCCc
Q 002870 655 SLEHLLQYGEQNIRRAVPLALGLLCISNPKV-----NVMDTLSRLSHDTD------SEVAMAAVISLGLIGSGTNN 719 (872)
Q Consensus 655 il~~L~~~~~~~VR~ga~lALGL~~agt~~~-----~aid~L~~l~~D~d------~~Vr~~AiiAlGlV~aGt~n 719 (872)
.+-.|+++++..||+.++.+|.-++.+..+. .++..|-++...++ +.|...|+-+++-+..++++
T Consensus 335 ~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~ 410 (457)
T 1xm9_A 335 QIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ 410 (457)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH
Confidence 5556667788889888888888776654322 35555555554432 45777788888888777663
No 63
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=94.51 E-value=0.16 Score=54.56 Aligned_cols=137 Identities=14% Similarity=0.058 Sum_probs=91.5
Q ss_pred HHHHH-hhcccCCCCccchhhhHhHhhhhhhcchhhHh------HHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch-
Q 002870 614 QNLLG-HCAQHHEKGEAYQGPAVLGIAMVAMAEELGLE------MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV- 685 (872)
Q Consensus 614 ~~LL~-~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e------~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~- 685 (872)
..|+. .+.+ .++ .+|..|+-+||-|+-++|..+. -++.++..|..+.++.+|..+++||+-++.+++..
T Consensus 84 ~~Lv~~lL~s-~~~--~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~ 160 (296)
T 1xqr_A 84 HLLVGRYLEA-GAA--GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL 160 (296)
T ss_dssp HHHHHTTTTC-SSH--HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcC-CCH--HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 45555 5443 232 7999999999999887763222 34455555544557899999999999998887642
Q ss_pred ------HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchH--H--HHHHHHhhhhh-ccChhhHHHHHHHHhhhhcC
Q 002870 686 ------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNAR--I--AGMLRNLSSYY-YKDANLLFCVRIAQGLVHMG 753 (872)
Q Consensus 686 ------~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~r--v--~~~lr~l~s~~-~~d~~~~f~~~lAqGll~~G 753 (872)
.++..|.++.++++..|+..|+.+++-+..|+++.+ + ...++.|.... +.|+..+--+.-|+|-+.-|
T Consensus 161 ~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 161 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 356678888899999999999999999988855321 1 11222222221 35666666666666655544
No 64
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.50 E-value=2 Score=43.95 Aligned_cols=224 Identities=11% Similarity=0.002 Sum_probs=114.6
Q ss_pred hhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCC-C
Q 002870 420 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQ-N 498 (872)
Q Consensus 420 lI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~-~ 498 (872)
....|+.++++..+.+.+.........-..++..+...|. .+.++..+...+...... ..+...+|.++...+ +
T Consensus 32 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 32 HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNK---ANELFYLSHKLVDLYPSN--PVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTTS--THHHHHHHHHHHHSCSC
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhh---HHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHhhhh
Confidence 3445888889888777664322221111112222233333 233666666655421111 134556667776666 4
Q ss_pred -HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhh
Q 002870 499 -DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES 576 (872)
Q Consensus 499 -~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~ 576 (872)
++..+.+...+. ++. ..+ +-..+|.++.-.++.+.+...+.......+. .......+|..+...|+-++
T Consensus 107 ~~~A~~~~~~a~~~~~~-~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 107 NEHARRYLSKATTLEKT-YGP----AWIAYGHSFAVESEHDQAMAAYFTAAQLMKG----CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHHHHHHHHHTTCTT-CTH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT----CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCc-cHH----HHHHHHHHHHHccCHHHHHHHHHHHHHhccc----cHHHHHHHHHHHHHHhhHHH
Confidence 346666666664 332 222 4556677777767765554444443332221 11223336666777788887
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccC----CC---CccchhhhHhHhhhhhhcchhhH
Q 002870 577 VEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHH----EK---GEAYQGPAVLGIAMVAMAEELGL 649 (872)
Q Consensus 577 a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~----~d---~~~vrr~Avl~iglI~~~~~~g~ 649 (872)
+...++......... ......+|..|...|+.......+.-+.... +. .........+|..+...|+.
T Consensus 178 A~~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--- 252 (330)
T 3hym_B 178 AERFFSQALSIAPED--PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY--- 252 (330)
T ss_dssp HHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHhCCCC--hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH---
Confidence 777777655432211 2234456777888888654444433332211 00 00233344555555555665
Q ss_pred hHHHHHHHHHhhc
Q 002870 650 EMAIRSLEHLLQY 662 (872)
Q Consensus 650 e~~~~il~~L~~~ 662 (872)
+.+.+.+....+.
T Consensus 253 ~~A~~~~~~a~~~ 265 (330)
T 3hym_B 253 AEALDYHRQALVL 265 (330)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 6677777665543
No 65
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.21 E-value=2.4 Score=46.55 Aligned_cols=89 Identities=18% Similarity=0.067 Sum_probs=56.1
Q ss_pred chhhhHhHhhhhhh---cchhhHh------HHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch-------HHHHHHHH
Q 002870 630 YQGPAVLGIAMVAM---AEELGLE------MAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-------NVMDTLSR 693 (872)
Q Consensus 630 vrr~Avl~iglI~~---~~~~g~e------~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~-------~aid~L~~ 693 (872)
++..|+-.|.-++. +.+...+ .++.++ .+++++++.++..++.||+-++.+++.. .++..|-.
T Consensus 234 v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~ 312 (354)
T 3nmw_A 234 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL-QHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN 312 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHH-HHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHH-HHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHH
Confidence 55555555555553 3332211 123333 4456677888888888888887765543 23566667
Q ss_pred hhcCCchHHHHHHHHHHHHHcCCCCc
Q 002870 694 LSHDTDSEVAMAAVISLGLIGSGTNN 719 (872)
Q Consensus 694 l~~D~d~~Vr~~AiiAlGlV~aGt~n 719 (872)
+.+..+..++..|..||.-+..++.+
T Consensus 313 LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 313 LIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 77777888888888888888777654
No 66
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.11 E-value=3.6 Score=43.14 Aligned_cols=144 Identities=13% Similarity=0.057 Sum_probs=69.1
Q ss_pred ccccchhhHHhHhhhccCCCch-hHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC-H
Q 002870 422 LLWDVDSGLAQIDKYFHSTDNH-VIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-D 499 (872)
Q Consensus 422 ~~~~~~~~l~~l~~yL~s~~~~-~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~-~ 499 (872)
+.|+...+++.+.+....+.+. ...-.+++-..+..|.. +.++..+.. .++. ..-+...++..+.+..+ +
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~---~~al~~~~~----~~~~-~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKY---GVVLDEIKP----SSAP-ELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCH---HHHHHHSCT----TSCH-HHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCH---HHHHHHhcc----cCCh-hHHHHHHHHHHHcCCCcHH
Confidence 4566666666665544332222 23334444444444432 235443322 2221 23455555555665543 3
Q ss_pred HHHHHHHHHhcC---CCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhh
Q 002870 500 QIRHKLSTILND---AKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQES 576 (872)
Q Consensus 500 ~i~e~L~~~L~d---~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~ 576 (872)
+..+.+...+.+ ++ +.+ +-+.+|.+++..|+.+-+...+. + + ....-...+|..+..+|+.++
T Consensus 83 ~A~~~l~~ll~~~~~P~-~~~----~~~~la~~~~~~g~~~~Al~~l~----~-~----~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVT-NTT----FLLMAASIYFYDQNPDAALRTLH----Q-G----DSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp HHHHHHHHHHHSCCCCS-CHH----HHHHHHHHHHHTTCHHHHHHHHT----T-C----CSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcccCCC-CHH----HHHHHHHHHHHCCCHHHHHHHHh----C-C----CCHHHHHHHHHHHHHCCCHHH
Confidence 455555555532 21 222 45666777776666544333332 1 1 111223334555666777777
Q ss_pred HHHHHHHHhhh
Q 002870 577 VEATAEVSKTF 587 (872)
Q Consensus 577 a~~ll~~L~~~ 587 (872)
+...++.+...
T Consensus 149 A~~~l~~~~~~ 159 (291)
T 3mkr_A 149 ARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 77666665543
No 67
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=94.05 E-value=7.9 Score=41.75 Aligned_cols=308 Identities=10% Similarity=-0.007 Sum_probs=164.0
Q ss_pred HHHhhhhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 002870 415 AASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYA 494 (872)
Q Consensus 415 ~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~ 494 (872)
..+......|+.++|+..+.+.+...... .-+.+.+|.++.... +.+.++..+...+...... ..+...+|.+|.
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~ 105 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGDPDN--YIAYYRRATVFLAMG-KSKAALPDLTKVIQLKMDF--TAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHH
Confidence 33444455789999998888776532222 344555555554332 2344777777665422111 245566777777
Q ss_pred cCCCH-HHHHHHHHHhc-CCCCch---HHH--------HHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhH
Q 002870 495 GTQND-QIRHKLSTILN-DAKSPL---DVI--------AFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRL 561 (872)
Q Consensus 495 Gt~~~-~i~e~L~~~L~-d~~~~~---e~~--------~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~ 561 (872)
..++. +..+.+...+. ++. .. +.. ....+.+|.++...++.+.+...++.+.+..+. ...-.
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~ 180 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW----DAELR 180 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHH
Confidence 66654 45555555554 332 22 210 112345577777777766555555554433221 12233
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhH------
Q 002870 562 IPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAV------ 635 (872)
Q Consensus 562 ~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Av------ 635 (872)
..+|..+...|+.+++...++......... ......+|..|...|+.......+.-+.....+ .......
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQD--HKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHH
Confidence 446666777888888777776655432111 223456778888999976555544443322111 2221111
Q ss_pred ------hHhhhhhhcchhhHhHHHHHHHHHhhcC--ChhHHhHHHHHHhhhccCCCc-hHHHHHHHHhh-cCCchHHHHH
Q 002870 636 ------LGIAMVAMAEELGLEMAIRSLEHLLQYG--EQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDSEVAMA 705 (872)
Q Consensus 636 ------l~iglI~~~~~~g~e~~~~il~~L~~~~--~~~VR~ga~lALGL~~agt~~-~~aid~L~~l~-~D~d~~Vr~~ 705 (872)
+|..+...|+. +.+.+.+....... ++..+.-+-..+|.++...++ .++++.+.+.. .+|+.. .
T Consensus 257 ~~~~~~~~~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~ 330 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRY---TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV---N 330 (450)
T ss_dssp HHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---H
T ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---H
Confidence 15555555665 77777777765432 344444455556665555554 35677777653 355443 2
Q ss_pred HHHHHHHHcCCCCc-hHHHHHHHHhhhhhccChhhHHH
Q 002870 706 AVISLGLIGSGTNN-ARIAGMLRNLSSYYYKDANLLFC 742 (872)
Q Consensus 706 AiiAlGlV~aGt~n-~rv~~~lr~l~s~~~~d~~~~f~ 742 (872)
+...+|.+....++ .+....+++..+....++..+..
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 368 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHH
Confidence 34556666655554 34455556555543344444333
No 68
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.92 E-value=0.0033 Score=66.08 Aligned_cols=189 Identities=17% Similarity=0.113 Sum_probs=98.3
Q ss_pred HhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCC
Q 002870 433 IDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDA 512 (872)
Q Consensus 433 l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~ 512 (872)
+..++.++++.++..|...++ ...|...+.+++..+|..++-.|+ . +.|...+.|+
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l~-------------~~~l~~L~~D~~~~VR~~aA~~L~--------~---~~L~~ll~D~ 110 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYSP-------------VEALTPLIRDSDEVVRRAVAYRLP--------R---EQLSALMFDE 110 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTSC-------------GGGGGGGTTCSSHHHHHHHHTTSC--------S---GGGGGTTTCS
T ss_pred HHHHhcCCCHHHHHHHHHhCC-------------HHHHHHHccCcCHHHHHHHHHHCC--------H---HHHHHHHcCC
Confidence 555666777888877776431 113455667888888888776542 1 3455555665
Q ss_pred CCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhh
Q 002870 513 KSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIR 592 (872)
Q Consensus 513 ~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~ 592 (872)
+.++..+++-.+ . . .++..|.. + .+..+|..+.. . +. ...+..+..++++..
T Consensus 111 --d~~VR~~aA~~l------~--~----~~L~~L~~----D-~d~~VR~~aA~-~---l~-----~~~l~~l~~D~d~~V 162 (244)
T 1lrv_A 111 --DREVRITVADRL------P--L----EQLEQMAA----D-RDYLVRAYVVQ-R---IP-----PGRLFRFMRDEDRQV 162 (244)
T ss_dssp --CHHHHHHHHHHS------C--T----GGGGGGTT----C-SSHHHHHHHHH-H---SC-----GGGGGGTTTCSCHHH
T ss_pred --CHHHHHHHHHhC------C--H----HHHHHHHc----C-CCHHHHHHHHH-h---cC-----HHHHHHHHcCCCHHH
Confidence 345555555542 1 1 12222221 1 34455554433 1 11 123344555666666
Q ss_pred hhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHH
Q 002870 593 KYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVP 672 (872)
Q Consensus 593 r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~ 672 (872)
|...+-. .+ ..+|..+..|.+. .||+.++-.+ .. ..+..|+++.++.||..++
T Consensus 163 R~~aa~~-------l~-----~~ll~~ll~D~d~--~VR~aaa~~l-----~~--------~~L~~Ll~D~d~~VR~~aa 215 (244)
T 1lrv_A 163 RKLVAKR-------LP-----EESLGLMTQDPEP--EVRRIVASRL-----RG--------DDLLELLHDPDWTVRLAAV 215 (244)
T ss_dssp HHHHHHH-------SC-----GGGGGGSTTCSSH--HHHHHHHHHC-----CG--------GGGGGGGGCSSHHHHHHHH
T ss_pred HHHHHHc-------CC-----HHHHHHHHcCCCH--HHHHHHHHhC-----CH--------HHHHHHHcCCCHHHHHHHH
Confidence 6554432 11 1233333333332 5666555442 11 2345556666777777777
Q ss_pred HHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 002870 673 LALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGL 712 (872)
Q Consensus 673 lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGl 712 (872)
.++| ...|..+ .|++..||..|.-+||+
T Consensus 216 ~~l~-----------~~~L~~L-~D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 216 EHAS-----------LEALREL-DEPDPEVRLAIAGRLGI 243 (244)
T ss_dssp HHSC-----------HHHHHHC-CCCCHHHHHHHHCCC--
T ss_pred HcCC-----------HHHHHHc-cCCCHHHHHHHHHHhCC
Confidence 7765 2456666 77777777776666554
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.90 E-value=1.2 Score=45.26 Aligned_cols=150 Identities=13% Similarity=0.062 Sum_probs=96.5
Q ss_pred HHHHHHHHhhcccCCCCccchhhhHhHhhhhhh--cchhhHhHHHHHHHHH---hhcCChhHHhHHHHHHhhhccCCCch
Q 002870 611 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAM--AEELGLEMAIRSLEHL---LQYGEQNIRRAVPLALGLLCISNPKV 685 (872)
Q Consensus 611 ~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~--~~~~g~e~~~~il~~L---~~~~~~~VR~ga~lALGL~~agt~~~ 685 (872)
..++.|...+..+.+. .||..|.-+++.++- +... ...+..++..+ +.+.++.||.++.-|+.-++...+-.
T Consensus 56 ~i~~~L~~~l~kd~~~--~V~~~a~~~l~~la~~l~~~~-~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~ 132 (242)
T 2qk2_A 56 ALVSALKKVITKDSNV--VLVAMAGKCLALLAKGLAKRF-SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE 132 (242)
T ss_dssp HHHHHHHHHHHHCSCH--HHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 3444455544323332 678888888887763 2221 12333333333 35567999999999999887777777
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc-----hHHHHHHHHhhhhh-ccChhhHHHHHHHHhhhhcCCCceee
Q 002870 686 NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN-----ARIAGMLRNLSSYY-YKDANLLFCVRIAQGLVHMGKGLLTL 759 (872)
Q Consensus 686 ~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n-----~rv~~~lr~l~s~~-~~d~~~~f~~~lAqGll~~G~g~~tl 759 (872)
.+++.|.....+.+..||..++-.++-+..-.+. +.+..++..|.... ..++..|-.+.-+.|.+..-=|.-.+
T Consensus 133 ~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~ 212 (242)
T 2qk2_A 133 AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV 212 (242)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence 8888888888889999999999999997655431 22333333333332 35667888888888887744344445
Q ss_pred cccC
Q 002870 760 NPYH 763 (872)
Q Consensus 760 sp~~ 763 (872)
.|+.
T Consensus 213 ~~~l 216 (242)
T 2qk2_A 213 TPLL 216 (242)
T ss_dssp GGGG
T ss_pred HHHH
Confidence 5553
No 70
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=93.83 E-value=0.24 Score=51.56 Aligned_cols=118 Identities=9% Similarity=0.031 Sum_probs=81.8
Q ss_pred hcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHH-HhhcCChhHHhHHHHHHhhhccCCC
Q 002870 605 AGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH-LLQYGEQNIRRAVPLALGLLCISNP 683 (872)
Q Consensus 605 aGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~-L~~~~~~~VR~ga~lALGL~~agt~ 683 (872)
..+.+...+-.|..-+-.+..+ .||..|+-.||-. . +. +.+...+.. +..+.+-.||..++.+++=.|...+
T Consensus 64 ~~~~~~~~~~~la~~L~~~~~d--eVR~~Av~lLg~~--~-~~--~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~ 136 (240)
T 3l9t_A 64 YKSNDGEYIKKLAFLAYQSDVY--QVRMYAVFLFGYL--S-KD--KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIE 136 (240)
T ss_dssp HHHSCHHHHHHHHHHHHTCSSH--HHHHHHHHHHHHT--T-TS--HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHhCCHHHHHHHHHHHHhCcch--HHHHHHHHHHHhc--c-Cc--HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC
Confidence 3445555555565555555555 7898999988876 2 22 567777776 8888889999999999998886333
Q ss_pred chHHHHHHHHhhcCCchHHHHHHHHHHHHHc----CCCCchHHHHHHHHh
Q 002870 684 KVNVMDTLSRLSHDTDSEVAMAAVISLGLIG----SGTNNARIAGMLRNL 729 (872)
Q Consensus 684 ~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~----aGt~n~rv~~~lr~l 729 (872)
-..+++.+.+.+.|++..||+.|+.++--.. ..++-.++..++..|
T Consensus 137 pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L 186 (240)
T 3l9t_A 137 YKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADL 186 (240)
T ss_dssp TTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHh
Confidence 3357888999999999999998888753211 223333455555554
No 71
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=93.65 E-value=8.6 Score=40.83 Aligned_cols=285 Identities=9% Similarity=-0.023 Sum_probs=150.9
Q ss_pred hhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH
Q 002870 420 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND 499 (872)
Q Consensus 420 lI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~ 499 (872)
....|+.++++..+.+-+........+-..+|......|...+ +...+...+...... ..+...+|.++...++.
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQAYVSALQYNPDL--YCVRSDLGNLLKALGRL 151 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSH---HHHHHHHHHHHCTTC--THHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCCc--HHHHHHHHHHHHHccCH
Confidence 3446888999888877664333333332333444444555443 666666554321111 12344567777666553
Q ss_pred -HHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhH
Q 002870 500 -QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV 577 (872)
Q Consensus 500 -~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a 577 (872)
+..+.+...+. ++. .. .+-..+|.++...++.+.+...++......+. ...-...+|..+...|+-+++
T Consensus 152 ~~A~~~~~~al~~~p~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 152 EEAKACYLKAIETQPN-FA----VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN----FLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHH
Confidence 45555555554 332 12 25567888888888876655555544433221 122233455556666666666
Q ss_pred HHHHHHHhh-hhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHH
Q 002870 578 EATAEVSKT-FNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSL 656 (872)
Q Consensus 578 ~~ll~~L~~-~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il 656 (872)
...++.... .++. ......+|.+|...|+.....+.+.-+.+...+ .......+|..+...|+. +.+.+.+
T Consensus 223 ~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~---~~A~~~~ 294 (388)
T 1w3b_A 223 VAAYLRALSLSPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH--FPDAYCNLANALKEKGSV---AEAEDCY 294 (388)
T ss_dssp HHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS--CHHHHHHHHHHHHHHSCH---HHHHHHH
T ss_pred HHHHHHHHhhCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCH---HHHHHHH
Confidence 555544333 2221 123345788889999976555555544332221 333445566666666776 7777887
Q ss_pred HHHhhcCChhHHhHHHHHHhhhccCCCch-HHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCCc-hHHHHHHHHhhh
Q 002870 657 EHLLQYGEQNIRRAVPLALGLLCISNPKV-NVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTNN-ARIAGMLRNLSS 731 (872)
Q Consensus 657 ~~L~~~~~~~VR~ga~lALGL~~agt~~~-~aid~L~~l~~-D~d~~Vr~~AiiAlGlV~aGt~n-~rv~~~lr~l~s 731 (872)
....+....+.. +-..+|.++...++. ++++.+.+... +|+.. .+...+|.+....++ .+....+++..+
T Consensus 295 ~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 295 NTALRLCPTHAD--SLNNLANIKREQGNIEEAVRLYRKALEVFPEFA---AAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHCTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH---HHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHhhCcccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 776655332322 223445555555544 56777777654 44432 234555666555553 233445554433
No 72
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.38 E-value=1 Score=49.69 Aligned_cols=230 Identities=11% Similarity=0.112 Sum_probs=88.0
Q ss_pred HHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHH----H
Q 002870 430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHK----L 505 (872)
Q Consensus 430 l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~----L 505 (872)
.+-|.+-+.++++++|+-|+=++|-|..... .+++...+...+.+.++++|-.|+++..-.+- ..+|+.+. +
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m--~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~--~~pe~v~~~~~~l 181 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDSTM--LQAIERYMKQAIVDKVPSVSSSALVSSLHLLK--CSFDVVKRWVNEA 181 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT--TCHHHHHTTHHHH
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhc--cCHHHHHHHHHHH
Confidence 3445555667788888888888888865432 23466666777778888888888888665543 34555444 3
Q ss_pred HHHhcCCCCchHHHHHHHHHHHhHhc-CCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChh---hHHHHH
Q 002870 506 STILNDAKSPLDVIAFSAISLGLIYV-GSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQE---SVEATA 581 (872)
Q Consensus 506 ~~~L~d~~~~~e~~~~AaLALGLi~l-Gs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e---~a~~ll 581 (872)
...+.|. +.-++ +.|+ ++++- ...+..++..+++.+.+. .+..+|.....+=+ +.-+++++ ..+.++
T Consensus 182 ~~ll~d~--n~~V~-~~Al--~lL~ei~~~d~~a~~kLv~~l~~~---~l~~~~~q~~llr~-l~~~~~~d~~~~~~~~~ 252 (355)
T 3tjz_B 182 QEAASSD--NIMVQ-YHAL--GLLYHVRKNDRLAVSKMISKFTRH---GLKSPFAYCMMIRV-ASRQLEDEDGSRDSPLF 252 (355)
T ss_dssp HHHTTCS--SHHHH-HHHH--HHHHHHHTTCHHHHHHHHHHHHSS---CCSCHHHHHHHHHH-HTCC-------------
T ss_pred HHHhcCC--CccHH-HHHH--HHHHHHHhhchHHHHHHHHHHhcC---CCcChHHHHHHHHH-HHHhccccchhhHHHHH
Confidence 3344443 22332 2222 22222 233455666666665321 12334443221111 12233332 233344
Q ss_pred HHHhhh---hhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHH
Q 002870 582 EVSKTF---NEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 658 (872)
Q Consensus 582 ~~L~~~---~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~ 658 (872)
+.+... .++..-| ++++-++.+-. ... .++ ..+...+..
T Consensus 253 ~~l~~~L~~~~~aVvy----------------Ea~k~I~~l~~--~~~--~~~------------------~~a~~~L~~ 294 (355)
T 3tjz_B 253 DFIESCLRNKHEMVVY----------------EAASAIVNLPG--CSA--KEL------------------APAVSVLQL 294 (355)
T ss_dssp ----CCCCCSSHHHHH----------------HHHHHHTC---------------------------------CCCTHHH
T ss_pred HHHHHHHcCCChHHHH----------------HHHHHHHhccC--CCH--HHH------------------HHHHHHHHH
Confidence 333211 1111111 12222222211 000 011 112234556
Q ss_pred HhhcCChhHHhHHHHHHhhhccCCCchH--HHHHHHHhhcCCchHHHHHHHHHH
Q 002870 659 LLQYGEQNIRRAVPLALGLLCISNPKVN--VMDTLSRLSHDTDSEVAMAAVISL 710 (872)
Q Consensus 659 L~~~~~~~VR~ga~lALGL~~agt~~~~--aid~L~~l~~D~d~~Vr~~AiiAl 710 (872)
++.+.+|++|+.+-=.+-.+....|+.= .-..++.+.+|+|..++.-||..|
T Consensus 295 fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 295 FCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHSSSSSSHHHHHHCC-------------------------------------
T ss_pred HHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 6667788888887766666655444321 123467888899988887766554
No 73
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=92.23 E-value=9 Score=38.94 Aligned_cols=224 Identities=13% Similarity=0.007 Sum_probs=127.4
Q ss_pred hccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC-H
Q 002870 421 ILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-D 499 (872)
Q Consensus 421 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~-~ 499 (872)
...|+.++++..+.+.+....... .+.+.+|.++....+..+.+...+...+...... ..+...+|.+|...++ +
T Consensus 67 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 67 VELNKANELFYLSHKLVDLYPSNP--VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY--GPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTST--HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC--THHHHHHHHHHHHHTCHH
T ss_pred HHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHccCHH
Confidence 556788899888877765332222 3455566655544323445777777776532211 1235566666665555 3
Q ss_pred HHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHH
Q 002870 500 QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVE 578 (872)
Q Consensus 500 ~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~ 578 (872)
+..+.+...+. ++. ..+ +.+.+|.++.-.++.+.+...+.......+. ...-...+|..+...|+-+++.
T Consensus 143 ~A~~~~~~a~~~~~~-~~~----~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~~~~~~A~ 213 (330)
T 3hym_B 143 QAMAAYFTAAQLMKG-CHL----PMLYIGLEYGLTNNSKLAERFFSQALSIAPE----DPFVMHEVGVVAFQNGEWKTAE 213 (330)
T ss_dssp HHHHHHHHHHHHTTT-CSH----HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccc-cHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcccHHHHH
Confidence 45555555553 222 122 3445888888888877666666655443222 1223344666677778888877
Q ss_pred HHHHHHhhhhh----h---hhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhH
Q 002870 579 ATAEVSKTFNE----K---IRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM 651 (872)
Q Consensus 579 ~ll~~L~~~~~----~---i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~ 651 (872)
..++....... + -........+|.+|...|+.......+.-+.....+ +......+|..+...|+. +.
T Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~---~~ 288 (330)
T 3hym_B 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ--NASTYSAIGYIHSLMGNF---EN 288 (330)
T ss_dssp HHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CSHHHHHHHHHHHHHTCH---HH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc--chHHHHHHHHHHHHhccH---HH
Confidence 77666544321 1 111234456788889999976555554444332222 344455566666666766 77
Q ss_pred HHHHHHHHhhc
Q 002870 652 AIRSLEHLLQY 662 (872)
Q Consensus 652 ~~~il~~L~~~ 662 (872)
+.+.+....+.
T Consensus 289 A~~~~~~al~~ 299 (330)
T 3hym_B 289 AVDYFHTALGL 299 (330)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHHHHcc
Confidence 77777766554
No 74
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=91.97 E-value=4 Score=44.76 Aligned_cols=153 Identities=16% Similarity=0.105 Sum_probs=83.2
Q ss_pred HHHHHHhhcccCCCCccchhhhHhHhhhhhhcc-hh----h-HhHHHHHHHHHhhcCCh----hHHhHHHHHHhhhcc--
Q 002870 613 VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAE-EL----G-LEMAIRSLEHLLQYGEQ----NIRRAVPLALGLLCI-- 680 (872)
Q Consensus 613 i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~-~~----g-~e~~~~il~~L~~~~~~----~VR~ga~lALGL~~a-- 680 (872)
|..|++.+.+..++ .+++.|+-++.-++... +. . ..-+...+-.++.+.++ .++..++.+|.-++.
T Consensus 172 Ip~Lv~lL~~~~~~--~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~ 249 (354)
T 3nmw_A 172 VKALMECALEVKKE--STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249 (354)
T ss_dssp HHHHHHHHHHCCCH--HHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc
Confidence 44555543322222 56666666666666522 21 1 11223334445555544 478878877776654
Q ss_pred -CCCch-------HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchH-------HHHHHHHhhhhhccChhhHHHHHH
Q 002870 681 -SNPKV-------NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNAR-------IAGMLRNLSSYYYKDANLLFCVRI 745 (872)
Q Consensus 681 -gt~~~-------~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~r-------v~~~lr~l~s~~~~d~~~~f~~~l 745 (872)
+++.. .++..|-.+..+.+..++.+|+-+++-+..|+.+-+ +...|.+|.. ++++..+-.+.-
T Consensus 250 a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~--s~~~~i~~~A~~ 327 (354)
T 3nmw_A 250 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH--SKHKMIAMGSAA 327 (354)
T ss_dssp TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTT--CSSHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHH
Confidence 44432 245667777888889999999999999977754322 1233333322 467777778888
Q ss_pred HHhhhhcCCCceeecccCCCCCCCChHHH
Q 002870 746 AQGLVHMGKGLLTLNPYHSDRFLLSPTAL 774 (872)
Q Consensus 746 AqGll~~G~g~~tlsp~~sd~~~~~~~a~ 774 (872)
|+.-+..+... .+.|+.++++++.
T Consensus 328 aL~nL~~~~~~-----~~~~~~~~~~~~~ 351 (354)
T 3nmw_A 328 ALRNLMANRPA-----KYKDANIMSPGSS 351 (354)
T ss_dssp HHHHHHTTCCG-----GGC----------
T ss_pred HHHHHHcCCHH-----HHhhhcccCCcCc
Confidence 88877776443 2355566666653
No 75
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=91.94 E-value=8.4 Score=43.78 Aligned_cols=63 Identities=22% Similarity=0.181 Sum_probs=47.5
Q ss_pred HHHHhhcCChhHHhHHHHHHhhhccCCCchH-------HHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 002870 656 LEHLLQYGEQNIRRAVPLALGLLCISNPKVN-------VMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 656 l~~L~~~~~~~VR~ga~lALGL~~agt~~~~-------aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~ 718 (872)
+-.++.+++..++..++.||+-++++++... ++..|-.+.+..+..++..|..||.-+....+
T Consensus 384 Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 384 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 3345567888999999999999987765432 35667777788888899999888888876643
No 76
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=91.38 E-value=0.019 Score=60.25 Aligned_cols=189 Identities=21% Similarity=0.147 Sum_probs=112.9
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc
Q 002870 470 LSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR 549 (872)
Q Consensus 470 L~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~ 549 (872)
+...+.++++.+|..++..|+ .+.|...+.|+ +..|...++-+|+ . + .+..+..
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l~-----------~~~l~~L~~D~--~~~VR~~aA~~L~-----~------~-~L~~ll~- 108 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYSP-----------VEALTPLIRDS--DEVVRRAVAYRLP-----R------E-QLSALMF- 108 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTSC-----------GGGGGGGTTCS--SHHHHHHHHTTSC-----S------G-GGGGTTT-
T ss_pred HHHHhcCCCHHHHHHHHHhCC-----------HHHHHHHccCc--CHHHHHHHHHHCC-----H------H-HHHHHHc-
Confidence 345567888999988887642 12355555666 4455556665432 1 1 2222221
Q ss_pred CccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCcc
Q 002870 550 SESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEA 629 (872)
Q Consensus 550 ~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~ 629 (872)
+ .+..+|..+.. .+ . ..++..|..++++..|...+-.+ + ..++..+..|.+. .
T Consensus 109 ---D-~d~~VR~~aA~-~l----~----~~~L~~L~~D~d~~VR~~aA~~l-------~-----~~~l~~l~~D~d~--~ 161 (244)
T 1lrv_A 109 ---D-EDREVRITVAD-RL----P----LEQLEQMAADRDYLVRAYVVQRI-------P-----PGRLFRFMRDEDR--Q 161 (244)
T ss_dssp ---C-SCHHHHHHHHH-HS----C----TGGGGGGTTCSSHHHHHHHHHHS-------C-----GGGGGGTTTCSCH--H
T ss_pred ---C-CCHHHHHHHHH-hC----C----HHHHHHHHcCCCHHHHHHHHHhc-------C-----HHHHHHHHcCCCH--H
Confidence 1 34566665433 22 1 12455667778888888665421 1 1233334444443 7
Q ss_pred chhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHH
Q 002870 630 YQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVIS 709 (872)
Q Consensus 630 vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiA 709 (872)
||+.++-.+ +. .++..++++.++.||..++-.++ .+.|..+.+|++..||..++-+
T Consensus 162 VR~~aa~~l-----~~--------~ll~~ll~D~d~~VR~aaa~~l~-----------~~~L~~Ll~D~d~~VR~~aa~~ 217 (244)
T 1lrv_A 162 VRKLVAKRL-----PE--------ESLGLMTQDPEPEVRRIVASRLR-----------GDDLLELLHDPDWTVRLAAVEH 217 (244)
T ss_dssp HHHHHHHHS-----CG--------GGGGGSTTCSSHHHHHHHHHHCC-----------GGGGGGGGGCSSHHHHHHHHHH
T ss_pred HHHHHHHcC-----CH--------HHHHHHHcCCCHHHHHHHHHhCC-----------HHHHHHHHcCCCHHHHHHHHHc
Confidence 887776652 22 25557889999999999998742 2478899999999999999988
Q ss_pred HHHHcCCCCchHHHHHHHHhhhhhccChhhHHHHHHHHhh
Q 002870 710 LGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGL 749 (872)
Q Consensus 710 lGlV~aGt~n~rv~~~lr~l~s~~~~d~~~~f~~~lAqGl 749 (872)
+| ...|..| . ..++.++..+.-++|+
T Consensus 218 l~-----------~~~L~~L-~--D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 218 AS-----------LEALREL-D--EPDPEVRLAIAGRLGI 243 (244)
T ss_dssp SC-----------HHHHHHC-C--CCCHHHHHHHHCCC--
T ss_pred CC-----------HHHHHHc-c--CCCHHHHHHHHHHhCC
Confidence 76 1344444 2 2455677777666654
No 77
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=90.22 E-value=24 Score=38.45 Aligned_cols=230 Identities=11% Similarity=0.091 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhccCCCH-HHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhH
Q 002870 482 RIGAIMGLGISYAGTQND-QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLT 559 (872)
Q Consensus 482 ~~gA~lGLGLay~Gt~~~-~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~ 559 (872)
..-+...+|.++...++. +..+.+...+. ++. . .+-..+|.++.-.++.+-+...+.......+. ...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~ 305 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--V----NSYIYMALIMADRNDSTEYYNYFDKALKLDSN----NSS 305 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--H----HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT----CTH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--H----HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC----CHH
Confidence 344566666666655543 34444444443 332 1 24455566655555443333333322222111 111
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhh
Q 002870 560 RLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIA 639 (872)
Q Consensus 560 r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~ig 639 (872)
-...+|..+...|+.+++...++......... ......+|..|...|+.......+.-+.....+ +......+|..
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~ 381 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPEN--IFPYIQLACLAYRENKFDDCETLFSEAKRKFPE--APEVPNFFAEI 381 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC--SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT--CSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--CHHHHHHHHHH
Confidence 22334445555666666655555443322111 123445666777777765444444433332221 33334445555
Q ss_pred hhhhcchhhHhHHHHHHHHHhhcC--Chh--HHhHHHHHHhhhccC---CCc-hHHHHHHHHhh-cCCchHHHHHHHHHH
Q 002870 640 MVAMAEELGLEMAIRSLEHLLQYG--EQN--IRRAVPLALGLLCIS---NPK-VNVMDTLSRLS-HDTDSEVAMAAVISL 710 (872)
Q Consensus 640 lI~~~~~~g~e~~~~il~~L~~~~--~~~--VR~ga~lALGL~~ag---t~~-~~aid~L~~l~-~D~d~~Vr~~AiiAl 710 (872)
+...|+. +.+.+.+....... ++. ....+-+.+|.++.. .++ .+++..+.+.. .+++.. .+...+
T Consensus 382 ~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l 455 (514)
T 2gw1_A 382 LTDKNDF---DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE---QAKIGL 455 (514)
T ss_dssp HHHTTCH---HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH---HHHHHH
T ss_pred HHHCCCH---HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Confidence 5555555 55666555543321 111 001133444554444 443 34555555443 233332 233445
Q ss_pred HHHcCCCCc-hHHHHHHHHhhh
Q 002870 711 GLIGSGTNN-ARIAGMLRNLSS 731 (872)
Q Consensus 711 GlV~aGt~n-~rv~~~lr~l~s 731 (872)
|.+....++ .+....+++...
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 555554443 233344444333
No 78
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=89.75 E-value=19 Score=36.72 Aligned_cols=303 Identities=9% Similarity=-0.004 Sum_probs=159.0
Q ss_pred hhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCC-CCHHHHHHHHHHHHHHhccCCC
Q 002870 420 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGISYAGTQN 498 (872)
Q Consensus 420 lI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGLay~Gt~~ 498 (872)
....|+.++|+..+.+.+....... .+.+.+|.++.... +.+.++..+...+.. ++.. .+...+|.+|.-.++
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGDPDNY--IAYYRRATVFLAMG-KSKAALPDLTKVIALKMDFT---AARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhhCcccH--HHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcc---hHHHHHHHHHHHcCC
Confidence 3456888999888887765332322 35555555554322 234477777666542 2211 456777777766665
Q ss_pred H-HHHHHHHHHhc-CCC--CchHHHH--------HHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHH
Q 002870 499 D-QIRHKLSTILN-DAK--SPLDVIA--------FSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGL 566 (872)
Q Consensus 499 ~-~i~e~L~~~L~-d~~--~~~e~~~--------~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lgl 566 (872)
. +..+.+...+. +++ ...+... ..-+.+|.++...++.+.+...+..+....+. .......+|.
T Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~ 162 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW----DAELRELRAE 162 (359)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----chHHHHHHHH
Confidence 3 45556665554 320 1222110 11133467777777766655555554433221 1223344566
Q ss_pred HhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchh------------hh
Q 002870 567 GLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQG------------PA 634 (872)
Q Consensus 567 gLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr------------~A 634 (872)
.+...|+.+++...++......... ......+|..|...|+.......+.-+.....+ .... ..
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQD--HKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--chHHHHHHHHHHHHHHHH
Confidence 6777788888777776655432211 124456777888889876555555444332221 1111 11
Q ss_pred HhHhhhhhhcchhhHhHHHHHHHHHhhcC--ChhHHhHHHHHHhhhccCCCc-hHHHHHHHHhhc-CCchHHHHHHHHHH
Q 002870 635 VLGIAMVAMAEELGLEMAIRSLEHLLQYG--EQNIRRAVPLALGLLCISNPK-VNVMDTLSRLSH-DTDSEVAMAAVISL 710 (872)
Q Consensus 635 vl~iglI~~~~~~g~e~~~~il~~L~~~~--~~~VR~ga~lALGL~~agt~~-~~aid~L~~l~~-D~d~~Vr~~AiiAl 710 (872)
.+|..+...++. +.+...+....... ++.....+-..+|.++...++ .++++.+.+... +|++. .+...+
T Consensus 239 ~~a~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ 312 (359)
T 3ieg_A 239 ESAEELIRDGRY---TDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV---NALKDR 312 (359)
T ss_dssp HHHHHHHHTTCH---HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHH
T ss_pred HHHHHHHHcCCH---HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH---HHHHHH
Confidence 224445555555 67777777665432 344444445556666555554 456667766643 55442 234556
Q ss_pred HHHcCCCCc-hHHHHHHHHhhhhhccChhhHHH
Q 002870 711 GLIGSGTNN-ARIAGMLRNLSSYYYKDANLLFC 742 (872)
Q Consensus 711 GlV~aGt~n-~rv~~~lr~l~s~~~~d~~~~f~ 742 (872)
|.+....++ .+....+++..+....++..+..
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 345 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 666665554 23445555544433334433333
No 79
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=89.40 E-value=6.7 Score=40.94 Aligned_cols=270 Identities=15% Similarity=0.093 Sum_probs=119.3
Q ss_pred CchhHHHHHHHhhhhccccchhhHH-hHhhhcc--CCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHH
Q 002870 407 KEHGKMSAAASLGMILLWDVDSGLA-QIDKYFH--STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRI 483 (872)
Q Consensus 407 ~~~~k~~A~aslGlI~~~~~~~~l~-~l~~yL~--s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~ 483 (872)
..|..+.....-.....++.++++. .+.+-+. ..++....-+++.+|..+.... +.+.++..+...+...... .
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~--~ 98 (368)
T 1fch_A 22 AELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG-DLPNAVLLFEAAVQQDPKH--M 98 (368)
T ss_dssp ------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTC--H
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCC--H
Confidence 3454443333222223346666665 4443332 2233333344455555554332 2344777777766532211 2
Q ss_pred HHHHHHHHHhccCCCH-HHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhH
Q 002870 484 GAIMGLGISYAGTQND-QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRL 561 (872)
Q Consensus 484 gA~lGLGLay~Gt~~~-~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~ 561 (872)
.+...+|.+|...++. +..+.+...+. ++. .. .+-..+|.++...++.+.+...+.......+.. ......
T Consensus 99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~ 171 (368)
T 1fch_A 99 EAWQYLGTTQAENEQELLAISALRRCLELKPD-NQ----TALMALAVSFTNESLQRQACEILRDWLRYTPAY--AHLVTP 171 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT--GGGCC-
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHHHH
Confidence 3556677777766653 45555555554 332 22 256677888888887766555555544432211 111110
Q ss_pred H--------------HHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCC
Q 002870 562 I--------------PLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKG 627 (872)
Q Consensus 562 ~--------------~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~ 627 (872)
. .++..+ ..|+-+++...++.................+|..|...|+.......+.-+.....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~- 249 (368)
T 1fch_A 172 AEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN- 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 0 122222 344445555555544433221112233456778888889876555444443322111
Q ss_pred ccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-hHHHHHHHHh
Q 002870 628 EAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRL 694 (872)
Q Consensus 628 ~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-~~aid~L~~l 694 (872)
+......+|..+...|+. +.+.+.+...+........ +-..+|.++...++ .++++.+.+.
T Consensus 250 -~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 250 -DYLLWNKLGATLANGNQS---EEAVAAYRRALELQPGYIR--SRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp -CHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334445555556666665 7777777766554322221 12333333333333 3455555544
No 80
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=89.39 E-value=33 Score=38.87 Aligned_cols=104 Identities=14% Similarity=0.084 Sum_probs=61.7
Q ss_pred HHHHHHhhcccCCCCccchhhhHhHhhhhhh-cchhh-----HhHHHHHHHHHhhcCCh----hHHhHHHHHHhhhcc--
Q 002870 613 VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAM-AEELG-----LEMAIRSLEHLLQYGEQ----NIRRAVPLALGLLCI-- 680 (872)
Q Consensus 613 i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~-~~~~g-----~e~~~~il~~L~~~~~~----~VR~ga~lALGL~~a-- 680 (872)
|..|++.+.+..++ .+++.|+-++.-++. .++.. ..-+...+-.++.+.++ .++..++.+|.-++.
T Consensus 288 I~~LV~lLl~s~~~--~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~ 365 (458)
T 3nmz_A 288 VKALMECALEVKKE--STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365 (458)
T ss_dssp HHHHHHHHTTCCSH--HHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 34455543322222 566666666666665 22211 11233344455555543 378878877776654
Q ss_pred -CCCchH-------HHHHHHHhhcCCchHHHHHHHHHHHHHcCCCC
Q 002870 681 -SNPKVN-------VMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718 (872)
Q Consensus 681 -gt~~~~-------aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~ 718 (872)
+++..+ ++..|-.+..+.+..|+..|+-+++-+..|+.
T Consensus 366 a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~ 411 (458)
T 3nmz_A 366 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP 411 (458)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCH
T ss_pred cCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCH
Confidence 554322 34566777788888899999999999977754
No 81
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=89.35 E-value=2.3 Score=46.89 Aligned_cols=103 Identities=10% Similarity=-0.046 Sum_probs=68.5
Q ss_pred CchhHHHHHHHhhhhccccchhhH-HhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHH
Q 002870 407 KEHGKMSAAASLGMILLWDVDSGL-AQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGA 485 (872)
Q Consensus 407 ~~~~k~~A~aslGlI~~~~~~~~l-~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA 485 (872)
.+..+..|.-++|.|.....-+.+ ..+..-+.+.++|++-.|+++..-++.-..+-....+..+.+.+.+.++.++..|
T Consensus 117 N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~A 196 (355)
T 3tjz_B 117 EDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHA 196 (355)
T ss_dssp CHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHH
T ss_pred cHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHH
Confidence 357788999999999876654432 3455556788999999999998866543321112234456667788888888766
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHhcC
Q 002870 486 IMGLGISYAGTQNDQIRHKLSTILND 511 (872)
Q Consensus 486 ~lGLGLay~Gt~~~~i~e~L~~~L~d 511 (872)
+-.|--+. ..+...+..|.+.+.+
T Consensus 197 l~lL~ei~--~~d~~a~~kLv~~l~~ 220 (355)
T 3tjz_B 197 LGLLYHVR--KNDRLAVSKMISKFTR 220 (355)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHHS
T ss_pred HHHHHHHH--hhchHHHHHHHHHHhc
Confidence 55554443 3355567777777654
No 82
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=88.49 E-value=28 Score=42.11 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=66.0
Q ss_pred HHHHHHhhcccCCCCccchhhhHhHhhhhhhcchh-hHhH----------HHHHHHHHhhcCChhHHhHHHHHHhhhccC
Q 002870 613 VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEEL-GLEM----------AIRSLEHLLQYGEQNIRRAVPLALGLLCIS 681 (872)
Q Consensus 613 i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~-g~e~----------~~~il~~L~~~~~~~VR~ga~lALGL~~ag 681 (872)
+..|..++.++ ++ .+||+|+-.++-++...+. ..+. -..++-.|++..|+.+|++++.||+.+..+
T Consensus 608 ~~~L~~LL~s~-n~--~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 608 WSTIENLMLDE-NV--PLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHGGGCS-SH--HHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CH--HHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 44555555443 32 7899998888888765441 0111 133566677899999999999999999766
Q ss_pred CCc--------hHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Q 002870 682 NPK--------VNVMDTLSRLSHD--TDSEVAMAAVISLGLI 713 (872)
Q Consensus 682 t~~--------~~aid~L~~l~~D--~d~~Vr~~AiiAlGlV 713 (872)
.+. .+.++.|..+.++ .++.++..++..+-=+
T Consensus 685 ~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL 726 (778)
T 3opb_A 685 IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGL 726 (778)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 665 3566777777777 6777776665554433
No 83
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=87.46 E-value=32 Score=36.33 Aligned_cols=279 Identities=11% Similarity=0.005 Sum_probs=136.6
Q ss_pred ccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC-HH
Q 002870 422 LLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQ 500 (872)
Q Consensus 422 ~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~-~~ 500 (872)
..++.+++...+...+....... -+...+|.++.... +.+.++..+...+...... ..+...+|.++...++ ++
T Consensus 45 ~~~~~~~a~~~~~~a~~~~p~~~--~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 45 QCRRLDRSAHFSTLAIKQNPLLA--EAYSNLGNVYKERG-QLQEAIEHYRHALRLKPDF--IDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHSCSSH
T ss_pred HcCCHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCcch--HHHHHHHHHHHHHcCCHHH
Confidence 35677777766665554332232 34445555444322 2234666666655321111 1234455555544333 34
Q ss_pred HHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHH
Q 002870 501 IRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEA 579 (872)
Q Consensus 501 i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ 579 (872)
..+.+...+. +++. . .+-..+|.++...++.+.+...+.......+. .......+|..+...|+-+++..
T Consensus 120 A~~~~~~al~~~p~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~ 190 (388)
T 1w3b_A 120 AVQAYVSALQYNPDL-Y----CVRSDLGNLLKALGRLEEAKACYLKAIETQPN----FAVAWSNLGCVFNAQGEIWLAIH 190 (388)
T ss_dssp HHHHHHHHHHHCTTC-T----HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCc-H----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555543 3321 1 24556788888777766655555544433221 12233345555555666666666
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHH-HHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHH
Q 002870 580 TAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL-KVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 658 (872)
Q Consensus 580 ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~-~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~ 658 (872)
.++......... ......+|..|...|+.. +++.+.+....+.+ +......+|..+...|+. +.+.+.+..
T Consensus 191 ~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~---~~A~~~~~~ 262 (388)
T 1w3b_A 191 HFEKAVTLDPNF--LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN---HAVVHGNLACVYYEQGLI---DLAIDTYRR 262 (388)
T ss_dssp HHHHHHHHCTTC--HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCH---HHHHHHHHH
T ss_pred HHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---CHHHHHHHHHHHHHcCCH---HHHHHHHHH
Confidence 665544432211 123445677777788743 33333333222222 233334455555555665 777777777
Q ss_pred HhhcC--ChhHHhHHHHHHhhhccCCCc-hHHHHHHHHhh-cCCchHHHHHHHHHHHHHcCCCCch-HHHHHHHHh
Q 002870 659 LLQYG--EQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDSEVAMAAVISLGLIGSGTNNA-RIAGMLRNL 729 (872)
Q Consensus 659 L~~~~--~~~VR~ga~lALGL~~agt~~-~~aid~L~~l~-~D~d~~Vr~~AiiAlGlV~aGt~n~-rv~~~lr~l 729 (872)
..... ++.+. ..+|.++...++ .++++.+.+.. .+|++. .+...+|.+....++. +....+++.
T Consensus 263 al~~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 263 AIELQPHFPDAY----CNLANALKEKGSVAEAEDCYNTALRLCPTHA---DSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHTCSSCHHHH----HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHhhCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66543 23332 333433333343 35666666553 344432 2345566666666642 344455543
No 84
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=86.93 E-value=36 Score=36.44 Aligned_cols=307 Identities=9% Similarity=0.038 Sum_probs=145.8
Q ss_pred hHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC-HHHHHHHHH
Q 002870 429 GLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQIRHKLST 507 (872)
Q Consensus 429 ~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~-~~i~e~L~~ 507 (872)
+...+..-+.........-..+|......|.. +.++..+...+...... ..+...+|.+|...++ ++..+.+..
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~---~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQL---ADALSQFHAAVDGDPDN--YIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444454544444444444444444444433 34777777665421111 3455666777766555 345555555
Q ss_pred Hhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccC---chhHh---------HHHHHHHhhhcCCh
Q 002870 508 ILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELG---EPLTR---------LIPLGLGLLYLGKQ 574 (872)
Q Consensus 508 ~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~---e~~~r---------~~~lglgLl~~G~~ 574 (872)
.+. ++. .. .+-..+|.++.-.++.+.+...+..+....+.. . +.+.. ....|..+...|.-
T Consensus 86 al~~~p~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 86 VIQLKMD-FT----AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE-NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHhcCCC-cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 554 332 12 356677888877787766666666554432211 1 11111 11224445556666
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHH
Q 002870 575 ESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIR 654 (872)
Q Consensus 575 e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~ 654 (872)
+++...++.+...... .......+|.+|...|+.....+.+.-+.....+ +......+|..+...|+. +.+..
T Consensus 160 ~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~---~~A~~ 232 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVW--DAELRELRAECFIKEGEPRKAISDLKAASKLKND--NTEAFYKISTLYYQLGDH---ELSLS 232 (450)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS--CHHHHHHHHHHHHHTTCH---HHHHH
T ss_pred HHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCH---HHHHH
Confidence 6766666655443221 1223455677788888754433333332221111 344455566666666666 77777
Q ss_pred HHHHHhhcCChhHHhHHH----------HHHhhhccCCCc-hHHHHHHHHhh-cCCc-hHHHHHHHHHHHHHcCCCCc-h
Q 002870 655 SLEHLLQYGEQNIRRAVP----------LALGLLCISNPK-VNVMDTLSRLS-HDTD-SEVAMAAVISLGLIGSGTNN-A 720 (872)
Q Consensus 655 il~~L~~~~~~~VR~ga~----------lALGL~~agt~~-~~aid~L~~l~-~D~d-~~Vr~~AiiAlGlV~aGt~n-~ 720 (872)
.+.........+...... +.+|..+...++ .++++.+.+.. .+|+ ......+...+|.+....++ .
T Consensus 233 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 233 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 777765543222221111 222444433333 45666666653 2333 33334456667777666665 3
Q ss_pred HHHHHHHHhhhhhccChhhHHHHHHHHhhhhcCCCce
Q 002870 721 RIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLL 757 (872)
Q Consensus 721 rv~~~lr~l~s~~~~d~~~~f~~~lAqGll~~G~g~~ 757 (872)
+....+++.......++ -+....|.++.-.|+.
T Consensus 313 ~A~~~~~~a~~~~p~~~----~~~~~l~~~~~~~~~~ 345 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNV----NALKDRAEAYLIEEMY 345 (450)
T ss_dssp HHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCcccH----HHHHHHHHHHHHhcCH
Confidence 44455555444322222 2333444444444443
No 85
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=86.72 E-value=39 Score=36.66 Aligned_cols=222 Identities=10% Similarity=0.033 Sum_probs=108.0
Q ss_pred hhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC-
Q 002870 420 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN- 498 (872)
Q Consensus 420 lI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~- 498 (872)
....|+.++++..+.+.+..... ..+...+|.++....+- +.++..+...+....... .+...+|.+|...++
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR---VNSYIYMALIMADRNDS-TEYYNYFDKALKLDSNNS--SVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHTSSCC-TTGGGHHHHHHTTCTTCT--HHHHHHHHHHHHTTCT
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc---HHHHHHHHHHHHHCCCH-HHHHHHHHHHhhcCcCCH--HHHHHHHHHHHHhCCH
Confidence 34467888888877776653333 45555566555433221 225555555554321111 234555666655543
Q ss_pred HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhH
Q 002870 499 DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV 577 (872)
Q Consensus 499 ~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a 577 (872)
++..+.+...+. ++. ..+ +-..+|.++.-.++.+.+...+.......+. ...-...+|..+...|+.+++
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIF----PYIQLACLAYRENKFDDCETLFSEAKRKFPE----APEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSH----HHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT----CSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhChh-hHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHccc----CHHHHHHHHHHHHHCCCHHHH
Confidence 345555555553 222 222 5567777777777766555555544432221 112233455556666777766
Q ss_pred HHHHHHHhhhhhhhhh----hhhHHHHHHhhhc---CCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHh
Q 002870 578 EATAEVSKTFNEKIRK----YCDMTLLSCAYAG---TGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLE 650 (872)
Q Consensus 578 ~~ll~~L~~~~~~i~r----~~~~~~~~lAyaG---TGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e 650 (872)
...++........... ......+|..|.. .|+.....+.+.-+.....+ .......+|..+...|+. +
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~---~ 466 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR--SEQAKIGLAQMKLQQEDI---D 466 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCH---H
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhcCH---H
Confidence 6665554432211110 1134456666666 67655444444333322111 222233344444444444 4
Q ss_pred HHHHHHHHHhh
Q 002870 651 MAIRSLEHLLQ 661 (872)
Q Consensus 651 ~~~~il~~L~~ 661 (872)
.+...+....+
T Consensus 467 ~A~~~~~~a~~ 477 (514)
T 2gw1_A 467 EAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 86
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=86.53 E-value=30 Score=35.20 Aligned_cols=264 Identities=9% Similarity=0.032 Sum_probs=140.4
Q ss_pred hhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCC---HHHHHHH----------H
Q 002870 420 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED---ACIRIGA----------I 486 (872)
Q Consensus 420 lI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~---~~v~~gA----------~ 486 (872)
....|+.++++..+.+.+....... .+...+|.++.... +-+.+...+...+.... .....-. .
T Consensus 47 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (359)
T 3ieg_A 47 FLAMGKSKAALPDLTKVIALKMDFT--AARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL 123 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHH
Confidence 3456889999988887765333333 45556666554332 23447777877776433 2222111 1
Q ss_pred HHHHHHhccCCC-HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHH
Q 002870 487 MGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPL 564 (872)
Q Consensus 487 lGLGLay~Gt~~-~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~l 564 (872)
..+|.++...++ ++..+.+...+. ++. .. .+-..+|.++.-.++.+.+...+.......+. .......+
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l 194 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVCVW-DA----ELRELRAECFIKEGEPRKAISDLKAASKLKSD----NTEAFYKI 194 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC----CHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC-ch----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHH
Confidence 233566666555 345555555554 322 22 25667788888888876666666555433221 12233456
Q ss_pred HHHhhhcCChhhHHHHHHHHhhhhhhhhh----h------hhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccc--hh
Q 002870 565 GLGLLYLGKQESVEATAEVSKTFNEKIRK----Y------CDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAY--QG 632 (872)
Q Consensus 565 glgLl~~G~~e~a~~ll~~L~~~~~~i~r----~------~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~v--rr 632 (872)
|..+...|+.+++...++........... + ...+..|..|...|+.......+.-+.....+++.. +.
T Consensus 195 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 274 (359)
T 3ieg_A 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 66677778888777766655433221111 1 122345777888998765555544433322211112 12
Q ss_pred hhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-hHHHHHHHHhh-cCCch
Q 002870 633 PAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDS 700 (872)
Q Consensus 633 ~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-~~aid~L~~l~-~D~d~ 700 (872)
...+|..+...|+. +.+.+.+.........+.. +-+.+|.++...++ .++++.+.+.. .+|++
T Consensus 275 ~~~la~~~~~~~~~---~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 275 KERICHCFSKDEKP---VEAIRICSEVLQMEPDNVN--ALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHHHHTTCH---HHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHccCH---HHHHHHHHHHHHhCcccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 33455666666776 7788888777654322222 22333444433344 45666776654 35543
No 87
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=86.46 E-value=6.1 Score=46.02 Aligned_cols=207 Identities=9% Similarity=0.009 Sum_probs=104.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHH
Q 002870 466 ALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFA 545 (872)
Q Consensus 466 ~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~ 545 (872)
..+.|..-|-++.=.+||||++||.-+.-..+.. -|.. ...|.+++-.++.+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G--------------------------AGR~--~~~N~DLAvRLLCV 226 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG--------------------------GDIQ--IRVDSKLFSKIYEI 226 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC------------------------------CC--CCCCTTHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC--------------------------Ccee--ccccHHHHHHHHHH
Confidence 6677777777788888888888877543322100 0110 22333455555555
Q ss_pred HhhcC-----ccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHh---hhhhhhhhhhhHHHHHHhhhcCCC-----HHH
Q 002870 546 LMDRS-----ESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSK---TFNEKIRKYCDMTLLSCAYAGTGN-----VLK 612 (872)
Q Consensus 546 L~~~~-----~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~---~~~~~i~r~~~~~~~~lAyaGTGn-----~~~ 612 (872)
+.-.. ..+.-.|++..+|-+||.+ .--++.. .++..|. ..+.--.|+|+. +|+-|. .+ ..+
T Consensus 227 LALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e~-~IL~qLV~~l~~~~WEVRHGGL--LGLKYL--~DLL~~Ld~V 300 (800)
T 3oc3_A 227 LVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGPN-DIIEQLVGFLDSGDWQVQFSGL--IALGYL--KEFVEDKDGL 300 (800)
T ss_dssp HHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCSC-CHHHHHTTGGGCSCHHHHHHHH--HHHHHT--GGGCCCHHHH
T ss_pred HHhccccccccCeeeeehHHHHHHHHHHH-HhCChhH-HHHHHHHhhcCCCCeeehhhhH--HHHHHH--HHHHHHHHHH
Confidence 54211 1122346666676666655 3333222 2233332 223345577766 456676 22 233
Q ss_pred HHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHH----hhcCChhHHhHHHH-HHhhhc----cCCC
Q 002870 613 VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHL----LQYGEQNIRRAVPL-ALGLLC----ISNP 683 (872)
Q Consensus 613 i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L----~~~~~~~VR~ga~l-ALGL~~----agt~ 683 (872)
+..+++-+. +.+| |||..|+-++-=|+ .+ +.+..+++.+ .+..|-..-.|..| -|+-+| ....
T Consensus 301 v~aVL~GL~-D~DD--DVRAVAAetLiPIA--~p---~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~ 372 (800)
T 3oc3_A 301 CRKLVSLLS-SPDE--DIKLLSAELLCHFP--IT---DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI 372 (800)
T ss_dssp HHHHHHHTT-CSSH--HHHHHHHHHHTTSC--CS---STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHhhcC-Cccc--HHHHHHHHHhhhhc--ch---hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc
Confidence 344444333 3344 89977776666555 44 4444444333 33322111111111 111111 1122
Q ss_pred chHHHHHHHHhhcCCchHHHHHHHHHHHHHc
Q 002870 684 KVNVMDTLSRLSHDTDSEVAMAAVISLGLIG 714 (872)
Q Consensus 684 ~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~ 714 (872)
++..+..|-|+.+.+-..||.+++-++--+.
T Consensus 373 dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 373 PPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 3466777889999999999998777665554
No 88
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=86.07 E-value=25 Score=34.39 Aligned_cols=54 Identities=11% Similarity=-0.028 Sum_probs=24.7
Q ss_pred HHHHHHHhccCCC-HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHH
Q 002870 486 IMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIF 544 (872)
Q Consensus 486 ~lGLGLay~Gt~~-~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~ 544 (872)
.+.+|.++...++ ++....+...+. ++. ..+ +-+.+|.++...++.+.+...++
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~----a~~~lg~~~~~~g~~~~A~~~~~ 63 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQ-DPE----ALYWLARTQLKLGLVNPALENGK 63 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHH----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH----HHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555555444 234444444443 321 222 44555555555555444433333
No 89
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=85.33 E-value=14 Score=37.16 Aligned_cols=115 Identities=14% Similarity=0.042 Sum_probs=65.2
Q ss_pred hhhccccchhhHHhHhhhcc--CCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcC----CCCHHHHHHHHHHHHHH
Q 002870 419 GMILLWDVDSGLAQIDKYFH--STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACIRIGAIMGLGIS 492 (872)
Q Consensus 419 GlI~~~~~~~~l~~l~~yL~--s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v~~gA~lGLGLa 492 (872)
-....|+.++++..+.+.+. ..++...+-++..+|.++....+ .+.+...+...+. ..+.....-+...+|.+
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD-YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 33556888888888877654 33445556677778877764432 3446666555432 12344555677788888
Q ss_pred hccCCCH-HHHHHHHHHhc---CCCCchHHHHHHHHHHHhHhcCCCC
Q 002870 493 YAGTQND-QIRHKLSTILN---DAKSPLDVIAFSAISLGLIYVGSCN 535 (872)
Q Consensus 493 y~Gt~~~-~i~e~L~~~L~---d~~~~~e~~~~AaLALGLi~lGs~n 535 (872)
|.-.++. +..+.+...+. +.. .......+-..+|.++...++
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELN-DKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHcCc
Confidence 8776654 33444433331 111 122223466677777766555
No 90
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=85.01 E-value=17 Score=45.68 Aligned_cols=229 Identities=13% Similarity=0.078 Sum_probs=134.2
Q ss_pred chhHHHHHHHhhccCCCChHHHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccC-CccccccCCCCCCCCCCCcc
Q 002870 324 SEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFG-QDKLMTVPSDASSGGSSGNW 402 (872)
Q Consensus 324 ~~~~~~~~~~l~i~~~k~~~~iyK~~l~~~r~~~~~~~dsa~~~la~~~~nafvnaG~~-~D~~l~~~~~~~~~~~~~~w 402 (872)
...|..+.+.+-.++.+..+.+|+..-. + ...+ ..|..|+..+|+. +-+++.. |
T Consensus 310 ~~~f~~Lv~~lR~~~~e~L~~l~~~~~~--~-------~~~r----~~~lDal~~aGT~~a~~~i~~------------~ 364 (1056)
T 1lsh_A 310 PAKFLRLTAFLRNVDAGVLQSIWHKLHQ--Q-------KDYR----RWILDAVPAMATSEALLFLKR------------T 364 (1056)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHTT--S-------HHHH----HHHHHHHHHHCSHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc--c-------HHHH----HHHHHHhHhcCCHHHHHHHHH------------H
Confidence 4567788888888887788888876532 1 1222 2488999999988 5455543 6
Q ss_pred ccccCc-hhHHHHHHHhhhhccccc-hhhHHhHhhhccC----CCchhHHHHHHHHHHhhc---CCCCC-----hhhHHH
Q 002870 403 LFKNKE-HGKMSAAASLGMILLWDV-DSGLAQIDKYFHS----TDNHVIAGALLGVGIVNC---GIRND-----CDPALA 468 (872)
Q Consensus 403 l~k~~~-~~k~~A~aslGlI~~~~~-~~~l~~l~~yL~s----~~~~~k~GAllaLGli~~---G~~~e-----~d~~~~ 468 (872)
|.+.+- -..+.-+.+. ..|.-.. .+.+..+.+.+.+ .++..+-.++||+|-.-. ..... ..++..
T Consensus 365 i~~~~l~~~ea~~~l~~-~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~ 443 (1056)
T 1lsh_A 365 LASEQLTSAEATQIVAS-TLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHD 443 (1056)
T ss_dssp HHTTCSCHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHH
T ss_pred HHcCCCCHHHHHHHHHH-hhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 655431 1222111111 2232222 3345555565543 466788889999875522 11111 235666
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcC-----CCCchHHHHHHHHHHHhHhcCCCCHH-HHHHH
Q 002870 469 LLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILND-----AKSPLDVIAFSAISLGLIYVGSCNEE-VAQAI 542 (872)
Q Consensus 469 lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e~L~~~L~d-----~~~~~e~~~~AaLALGLi~lGs~n~~-~~e~l 542 (872)
+|.+.+.+.+..-+.-++-|||=+ | .+..++.|.+++.. .+.+..++.+|..||-.+- ...++ +-+.+
T Consensus 444 ~l~~~~~~~~~~~~~~~LkaLGN~--g--~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~--~~~p~~v~~il 517 (1056)
T 1lsh_A 444 LLSQSSDRAKEEEIVLALKALGNA--G--QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA--KRDPRKVQEIV 517 (1056)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--T--CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG--GTCHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHhhcc--C--ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhh--hhchHHHHHHH
Confidence 677777777777788899999964 4 35788899998852 2335667778999998874 34444 45556
Q ss_pred HHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhh
Q 002870 543 IFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFN 588 (872)
Q Consensus 543 l~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~ 588 (872)
++.+++.. .+.=.|.+|+-+-+-.--.......+.+.+...+
T Consensus 518 ~~i~~n~~----e~~EvRiaA~~~Lm~t~P~~~~l~~ia~~l~~E~ 559 (1056)
T 1lsh_A 518 LPIFLNVA----IKSELRIRSCIVFFESKPSVALVSMVAVRLRREP 559 (1056)
T ss_dssp HHHHHCTT----SCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTTCS
T ss_pred HHHhcCCC----CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhhCc
Confidence 66654432 2344576654222211122345666777766543
No 91
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=84.51 E-value=41 Score=34.96 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=23.0
Q ss_pred hHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-hHHHHHHHHh
Q 002870 636 LGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRL 694 (872)
Q Consensus 636 l~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-~~aid~L~~l 694 (872)
+|..+...|+. +.+.+.+....+....+.. +-..+|.++...++ .++++.+.+.
T Consensus 219 l~~~~~~~g~~---~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 219 LGVLFHLSGEF---NRAIDAFNAALTVRPEDYS--LWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHTCH---HHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCH---HHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444 5566666555443221111 22333333333333 3455555544
No 92
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=83.59 E-value=20 Score=37.56 Aligned_cols=194 Identities=14% Similarity=0.025 Sum_probs=97.7
Q ss_pred hccccchhhHHhHhhhcc----CCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcC----CCCHHHHHHHHHHHHHH
Q 002870 421 ILLWDVDSGLAQIDKYFH----STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACIRIGAIMGLGIS 492 (872)
Q Consensus 421 I~~~~~~~~l~~l~~yL~----s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v~~gA~lGLGLa 492 (872)
...|+.++++..+.+.+. ..++...+-+...+|.++.... +.+.++..+...+. ..+.....-+...+|.+
T Consensus 58 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 58 FYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 345788888776665432 2445566677777787775432 23446665555443 12334445577777777
Q ss_pred hccCCC---------------------HHHHHHHHHHh---cCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhh
Q 002870 493 YAGTQN---------------------DQIRHKLSTIL---NDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMD 548 (872)
Q Consensus 493 y~Gt~~---------------------~~i~e~L~~~L---~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~ 548 (872)
|...++ ++..+.+...+ .... .......+-..+|.++...++.+-+...+.....
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 765554 22333332222 1111 1122234666777777777765544443333222
Q ss_pred cCccccCch---hHhHHHHHHHhhhcCChhhHHHHHHHHhh----hhhhhhhhhhHHHHHHhhhcCCCHHHHHHHH
Q 002870 549 RSESELGEP---LTRLIPLGLGLLYLGKQESVEATAEVSKT----FNEKIRKYCDMTLLSCAYAGTGNVLKVQNLL 617 (872)
Q Consensus 549 ~~~~~l~e~---~~r~~~lglgLl~~G~~e~a~~ll~~L~~----~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL 617 (872)
..+.. .+. ......+|..+...|+.+++...++.... .+++....-....+|..|...|+.....+.+
T Consensus 216 ~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 216 IAKEF-GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhc-CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 11110 111 11223345555566766666555544332 2233333344556677777788765444433
No 93
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=82.13 E-value=33 Score=34.56 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=41.2
Q ss_pred hccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH-
Q 002870 421 ILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND- 499 (872)
Q Consensus 421 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~- 499 (872)
...|+.++++..+.+.+....... .+...+|.++.... +.+.+...+...+...... ..+...+|.+|...++.
T Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 32 LKLANLAEAALAFEAVCQAAPERE--EAWRSLGLTQAENE-KDGLAIIALNHARMLDPKD--IAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCcCC--HHHHHHHHHHHHHcCCHH
Confidence 456788888887776654322222 33444444443222 2234666666554321111 22445566666655543
Q ss_pred HHHHHHHHHh
Q 002870 500 QIRHKLSTIL 509 (872)
Q Consensus 500 ~i~e~L~~~L 509 (872)
+..+.+...+
T Consensus 107 ~A~~~~~~~~ 116 (327)
T 3cv0_A 107 AALASLRAWL 116 (327)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 94
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=82.05 E-value=27 Score=36.98 Aligned_cols=124 Identities=13% Similarity=0.015 Sum_probs=70.1
Q ss_pred hHHHHHHHhhh--hccccchhhHHhHhhhcc--CCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcC----CCCHHH
Q 002870 410 GKMSAAASLGM--ILLWDVDSGLAQIDKYFH--STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACI 481 (872)
Q Consensus 410 ~k~~A~aslGl--I~~~~~~~~l~~l~~yL~--s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v 481 (872)
....+...+|. ...|+.++++..+.+-+. ..+....+-++..+|.++.... +.+.+...+...+. ..+...
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG-DYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHccCchH
Confidence 34444444554 446889999888877664 3344555667778887776332 23446666555443 133455
Q ss_pred HHHHHHHHHHHhccCCCH-HHHHHHHHHhc---CCCCchHHHHHHHHHHHhHhcCCCC
Q 002870 482 RIGAIMGLGISYAGTQND-QIRHKLSTILN---DAKSPLDVIAFSAISLGLIYVGSCN 535 (872)
Q Consensus 482 ~~gA~lGLGLay~Gt~~~-~i~e~L~~~L~---d~~~~~e~~~~AaLALGLi~lGs~n 535 (872)
...+...+|.+|.-.++. +..+.+...+. ... .......+-..+|.++...++
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-DRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHcCc
Confidence 566778888888776653 33333333331 110 112223466677777776665
No 95
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=81.96 E-value=56 Score=34.56 Aligned_cols=198 Identities=10% Similarity=0.006 Sum_probs=113.4
Q ss_pred ccccchhhHHhHhhhcc----CCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcC----CCC-HHHHHHHHHHHHHH
Q 002870 422 LLWDVDSGLAQIDKYFH----STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----RED-ACIRIGAIMGLGIS 492 (872)
Q Consensus 422 ~~~~~~~~l~~l~~yL~----s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~-~~v~~gA~lGLGLa 492 (872)
..|+.++|+..+.+-+. .+++...+-+...+|.++....+ .+.++..+...+. .++ ......+...||.+
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ-TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 35777788777666554 25566678888889988875433 3456666655442 222 44455688889999
Q ss_pred hccCCCH-HHHHHHHHHhc---CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc-Ccccc-CchhHhHHHHHH
Q 002870 493 YAGTQND-QIRHKLSTILN---DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR-SESEL-GEPLTRLIPLGL 566 (872)
Q Consensus 493 y~Gt~~~-~i~e~L~~~L~---d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~-~~~~l-~e~~~r~~~lgl 566 (872)
|...++. +..+.+...+. +.. .......+-..||.++...++.+-+...++...+- ....- .....-...+|.
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEK-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 9877764 34444444432 111 12233457778999999988876554444432221 00110 111222333555
Q ss_pred HhhhcCChhhHHHHHHHHhh----hhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcc
Q 002870 567 GLLYLGKQESVEATAEVSKT----FNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQ 622 (872)
Q Consensus 567 gLl~~G~~e~a~~ll~~L~~----~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~ 622 (872)
.+...|+-+++...++.... .++|..... ...++..|...|+...+++-+.++..
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 56666777777665554332 223433322 45688888889987666666666654
No 96
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=81.76 E-value=35 Score=32.12 Aligned_cols=13 Identities=15% Similarity=-0.072 Sum_probs=6.2
Q ss_pred HHHHhhhcCCCHH
Q 002870 599 LLSCAYAGTGNVL 611 (872)
Q Consensus 599 ~~~lAyaGTGn~~ 611 (872)
.+|.+|...|+..
T Consensus 118 ~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 118 NKGICSAKQGQFG 130 (225)
T ss_dssp HHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCHH
Confidence 3444445555543
No 97
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=81.13 E-value=42 Score=32.73 Aligned_cols=180 Identities=14% Similarity=0.112 Sum_probs=96.4
Q ss_pred HHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHH
Q 002870 522 SAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLS 601 (872)
Q Consensus 522 AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~ 601 (872)
+-+.+|.++...++.+-+...++......+. ...-...+|..+.-.|+-+++...++......... ..+...+|
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg 80 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQ----DPEALYWLARTQLKLGLVNPALENGKTLVARTPRY--LGGYMVLS 80 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHH
Confidence 5567888888888866555555544433222 12233456777777888887777776655432211 12334556
Q ss_pred HhhhcC-----------CCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhc-CChhHHh
Q 002870 602 CAYAGT-----------GNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY-GEQNIRR 669 (872)
Q Consensus 602 lAyaGT-----------Gn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~-~~~~VR~ 669 (872)
.+|... |+.......+.-+..-..+ +......+|..+...|+. +.+...+...+.- .++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~ 155 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--YAPLHLQRGLVYALLGER---DKAEASLKQALALEDTPEIRS 155 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcccchHHHH
Confidence 666666 7754444333333322111 344455666666666776 6666666654332 4455554
Q ss_pred HHHHHHhhhccCCCc-hHHHHHHHHhh-cCCchHHHHHHHHHHHHHcCCCCc
Q 002870 670 AVPLALGLLCISNPK-VNVMDTLSRLS-HDTDSEVAMAAVISLGLIGSGTNN 719 (872)
Q Consensus 670 ga~lALGL~~agt~~-~~aid~L~~l~-~D~d~~Vr~~AiiAlGlV~aGt~n 719 (872)
. +|.++...++ .+++..+.+.. .+|++. .+...+|.+....++
T Consensus 156 ~----la~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 156 A----LAELYLSMGRLDEALAQYAKALEQAPKDL---DLRVRYASALLLKGK 200 (217)
T ss_dssp H----HHHHHHHHTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHTC---
T ss_pred H----HHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHccC
Confidence 3 3333333343 35666666553 466553 234566777666654
No 98
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=80.49 E-value=42 Score=32.18 Aligned_cols=11 Identities=0% Similarity=-0.188 Sum_probs=4.7
Q ss_pred HHhhhcCCCHH
Q 002870 601 SCAYAGTGNVL 611 (872)
Q Consensus 601 ~lAyaGTGn~~ 611 (872)
|..|...|+..
T Consensus 132 a~~~~~~~~~~ 142 (243)
T 2q7f_A 132 GTVLVKLEQPK 142 (243)
T ss_dssp HHHHHHTSCHH
T ss_pred HHHHHHhccHH
Confidence 33444444433
No 99
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=80.12 E-value=74 Score=34.80 Aligned_cols=251 Identities=13% Similarity=0.049 Sum_probs=136.0
Q ss_pred cchhhHHhHhhhccCCCch-----hHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC-
Q 002870 425 DVDSGLAQIDKYFHSTDNH-----VIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN- 498 (872)
Q Consensus 425 ~~~~~l~~l~~yL~s~~~~-----~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~- 498 (872)
+.++++..+.+.+...... ..+-++..+|.++.... +.+.+...+...+..... ..+...+|.+|...++
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN-NLLDAQVLLQESINLHPT---PNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCC---HHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHhcCH
Confidence 5566776666665432221 23456777787765443 334577777766643222 3566778888877765
Q ss_pred HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhH
Q 002870 499 DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV 577 (872)
Q Consensus 499 ~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a 577 (872)
++..+.+...+. ++. ..+ +-..+|.++...++.+.+...+.......+. .......+|..+...|+-+++
T Consensus 293 ~~A~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPE-YPP----TYYHRGQMYFILQDYKNAKEDFQKAQSLNPE----NVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp HHHHHHHHHHHHHCTT-CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhccCCC-CHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHH
Confidence 455666666654 332 222 5677888888888876665555544433222 122344466677778888888
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccC-C-CCccchhhhHhHhhhhhh------------
Q 002870 578 EATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHH-E-KGEAYQGPAVLGIAMVAM------------ 643 (872)
Q Consensus 578 ~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~-~-d~~~vrr~Avl~iglI~~------------ 643 (872)
...++......... ......+|..|...|+.....+.+.-+.... + .............|.+..
T Consensus 364 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 364 EAFFNETKLKFPTL--PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 77776655432111 1233456888889999765544443332211 1 100122233444444443
Q ss_pred cchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-hHHHHHHHHhh
Q 002870 644 AEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS 695 (872)
Q Consensus 644 ~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-~~aid~L~~l~ 695 (872)
++. +.+...+....+....+. .+-..+|.++...++ .++++.+.+..
T Consensus 442 ~~~---~~A~~~~~~a~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 442 EKF---NAAIKLLTKACELDPRSE--QAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HHH---HHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 444 677777777665432222 123444444444444 35666666553
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=80.09 E-value=57 Score=33.48 Aligned_cols=159 Identities=12% Similarity=0.066 Sum_probs=77.0
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhh
Q 002870 562 IPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMV 641 (872)
Q Consensus 562 ~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI 641 (872)
..+|..+.-.|+.+++...++.....+... ..+.+.+|.+|...|+.......+.-+.....+ ........++.+.
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~--~~~~~~~~~~~l~ 196 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQN--GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD--TRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcc--hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc--hHHHHHHHHHHHH
Confidence 445555666677666666666544332111 123445666777777766555555554332111 2222333333343
Q ss_pred hhcchhhHhHHHHHHHHHhhc--CChhHHhHHHHHHhhhccCCCchHHHHHHHHhh-cCCch---HHHHHHHHHHHHHcC
Q 002870 642 AMAEELGLEMAIRSLEHLLQY--GEQNIRRAVPLALGLLCISNPKVNVMDTLSRLS-HDTDS---EVAMAAVISLGLIGS 715 (872)
Q Consensus 642 ~~~~~~g~e~~~~il~~L~~~--~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~-~D~d~---~Vr~~AiiAlGlV~a 715 (872)
..++. +.+.+.+...+.. .++..++..+. .+...| ...++++.|.+.. .||+. .++.+ ++.-+-..
T Consensus 197 ~~~~~---~~a~~~l~~al~~~P~~~~~~~~la~--~l~~~g-~~~~A~~~l~~~l~~~p~~~~~~a~~~--l~~~~~~~ 268 (287)
T 3qou_A 197 XQAAD---TPEIQQLQQQVAENPEDAALATQLAL--QLHQVG-RNEEALELLFGHLRXDLTAADGQTRXT--FQEILAAL 268 (287)
T ss_dssp HHHTS---CHHHHHHHHHHHHCTTCHHHHHHHHH--HHHHTT-CHHHHHHHHHHHHHHCTTGGGGHHHHH--HHHHHHHH
T ss_pred hhccc---CccHHHHHHHHhcCCccHHHHHHHHH--HHHHcc-cHHHHHHHHHHHHhcccccccchHHHH--HHHHHHHc
Confidence 33333 3344555544433 23444433222 222222 2345666666554 45543 23332 23333344
Q ss_pred CCCchHHHHHHHHhhhh
Q 002870 716 GTNNARIAGMLRNLSSY 732 (872)
Q Consensus 716 Gt~n~rv~~~lr~l~s~ 732 (872)
|..++.+..++|.|++.
T Consensus 269 g~~~~a~~~~r~al~~~ 285 (287)
T 3qou_A 269 GTGDALASXYRRQLYAL 285 (287)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 66677788888887764
No 101
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=79.72 E-value=44 Score=32.00 Aligned_cols=205 Identities=10% Similarity=0.054 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhH
Q 002870 518 VIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDM 597 (872)
Q Consensus 518 ~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~ 597 (872)
....+-+.+|..+.-.++-+.+...+.......+. ...-...+|..+...|+-+++...++......... ....
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~ 94 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE----DAIPYINFANLLSSVNELERALAFYDKALELDSSA--ATAY 94 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc--hHHH
Confidence 33455666777777666554433334333322111 12223345555666677776666665544332111 1233
Q ss_pred HHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhh
Q 002870 598 TLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGL 677 (872)
Q Consensus 598 ~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL 677 (872)
..++..|...|+.....+.+.-+.....+ +......+|..+...++. +.+...+............. -+.+|.
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~--~~~l~~ 167 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAGME--NGDLFYMLGTVLVKLEQP---KLALPYLQRAVELNENDTEA--RFQFGM 167 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTCC--SHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHHCTTCHHH--HHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhccH---HHHHHHHHHHHHhCCccHHH--HHHHHH
Confidence 45677777888866555544443332221 333344555556666665 77777777766543222222 223333
Q ss_pred hccCCC-chHHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCCc-hHHHHHHHHhhhhhccChh
Q 002870 678 LCISNP-KVNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTNN-ARIAGMLRNLSSYYYKDAN 738 (872)
Q Consensus 678 ~~agt~-~~~aid~L~~l~~-D~d~~Vr~~AiiAlGlV~aGt~n-~rv~~~lr~l~s~~~~d~~ 738 (872)
++...+ -.++++.+.+... +++.. .+...+|.+....++ .+....+++.......++.
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQDPGHA---DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 333223 3456777766543 44332 234556665555554 2445555555443333333
No 102
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=79.23 E-value=18 Score=37.20 Aligned_cols=149 Identities=6% Similarity=-0.043 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcc---hh----hHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCC
Q 002870 610 VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAE---EL----GLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISN 682 (872)
Q Consensus 610 ~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~---~~----g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt 682 (872)
...++.|.+....|.+. .|+..|.-+++.++-+= .+ ...-.+.+++.+ .+..+.||..+.-|+--++...
T Consensus 59 ~~~~~~L~~~l~~D~n~--~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 59 SNLLGIYGHIIQKDANI--QAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYY 135 (249)
T ss_dssp HHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHc
Confidence 45566666665444443 56777777777766321 11 112344455555 3445889888777776555544
Q ss_pred ------C-chHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCc------hHH-HHHHHHhhhhh-ccChhhHHHHHHHH
Q 002870 683 ------P-KVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN------ARI-AGMLRNLSSYY-YKDANLLFCVRIAQ 747 (872)
Q Consensus 683 ------~-~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n------~rv-~~~lr~l~s~~-~~d~~~~f~~~lAq 747 (872)
+ -..+++.|.......+..||+.++-.++-+..-++. +.+ ..+...+.+.. ..++.+|=++.-+.
T Consensus 136 ~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 136 DPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp CTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4 556788777777777889999998888877755442 223 34444444443 34677888888888
Q ss_pred hhhhcCCCceeecc
Q 002870 748 GLVHMGKGLLTLNP 761 (872)
Q Consensus 748 Gll~~G~g~~tlsp 761 (872)
|.++-==|+-.+.|
T Consensus 216 ~~i~~~vG~~~~~p 229 (249)
T 2qk1_A 216 AILIKIFGMNTFVK 229 (249)
T ss_dssp HHHHHHHCSGGGHH
T ss_pred HHHHHHhCHHHHHH
Confidence 88873223333444
No 103
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=78.57 E-value=17 Score=35.93 Aligned_cols=103 Identities=15% Similarity=0.145 Sum_probs=66.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHhcC----------------ChhhhHHHhhc-cchHHHHHHHHhhcccCCCCChHHHHHHH
Q 002870 183 EIVAFHMKHNAEPEAVDLLMEVE----------------DLDLLVEHVDA-TNFKRTCLYLTSAAKYLPGPDDMLVLDIA 245 (872)
Q Consensus 183 ~iv~~~l~~n~e~eAvdlalE~~----------------~ld~i~~~vd~-~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~ 245 (872)
.-|..-++-|++..|+++|-+.+ +++.-+.+..+ .++.+ ++++.++.. +.+=|+.+
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~-L~~Ly~~tg------~~e~L~kl 82 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDK-LSFLYLVTG------DVNKLSKM 82 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH-HHHHHHHHT------CHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHH-HHHHHHHhC------CHHHHHHH
Confidence 34555566666777766665544 44444444443 33333 234433332 22556777
Q ss_pred HHHHHccCCHHHHHHHHHhCCChHHHHHHHHhcchHHHHHHHHHHHHhhcc
Q 002870 246 YMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGI 296 (872)
Q Consensus 246 ~~iy~k~~~~~~al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~larq~~ 296 (872)
.++....+++.-+..+++.+||.+...++|.++.. ...|+..||..-
T Consensus 83 a~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r----~~eA~~~A~t~g 129 (177)
T 3mkq_B 83 QNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGS----LPLAYAVAKANG 129 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC----HHHHHHHHHHTT
T ss_pred HHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCC----hHHHHHHHHHcC
Confidence 78888889999999999999999999999988643 446677776533
No 104
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=77.89 E-value=70 Score=33.25 Aligned_cols=195 Identities=15% Similarity=0.063 Sum_probs=99.1
Q ss_pred hhccccchhhHHhHhhhcc--CCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcC----CCCHHHHHHHHHHHHHHh
Q 002870 420 MILLWDVDSGLAQIDKYFH--STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACIRIGAIMGLGISY 493 (872)
Q Consensus 420 lI~~~~~~~~l~~l~~yL~--s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v~~gA~lGLGLay 493 (872)
....|+.++++..+.+-+. ..++...+-++..+|.++.... +-+.+...+...+. ..+......+...+|.+|
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3456899999888877654 3344445667778887776443 23446666554432 233455566778888888
Q ss_pred ccCCCH-HHHHHHHHHhc---CCCCchHHHHHHHHHHHhHhcCCCC--------------------HHHHHHHHHHHhhc
Q 002870 494 AGTQND-QIRHKLSTILN---DAKSPLDVIAFSAISLGLIYVGSCN--------------------EEVAQAIIFALMDR 549 (872)
Q Consensus 494 ~Gt~~~-~i~e~L~~~L~---d~~~~~e~~~~AaLALGLi~lGs~n--------------------~~~~e~ll~~L~~~ 549 (872)
.-.++. +..+.+...+. +.. .......+-..+|.++...++ -+.+...+......
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 776654 33444333331 111 112223466777877776665 22222222211110
Q ss_pred -CccccCchhH--hHHHHHHHhhhcCChhhHHHHHHHHh----hhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHH
Q 002870 550 -SESELGEPLT--RLIPLGLGLLYLGKQESVEATAEVSK----TFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLL 617 (872)
Q Consensus 550 -~~~~l~e~~~--r~~~lglgLl~~G~~e~a~~ll~~L~----~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL 617 (872)
.... ..+.. -...+|..+...|+-+++...++... ..+++.........+|..|...|+.......+
T Consensus 177 ~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 177 VTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 0110 11111 12234444555566666655444332 22333333334556677777888765444433
No 105
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=77.84 E-value=51 Score=32.82 Aligned_cols=172 Identities=13% Similarity=0.035 Sum_probs=95.9
Q ss_pred HHHHHHhhh--hccccchhhHHhHhhhccC------CCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCC------C
Q 002870 412 MSAAASLGM--ILLWDVDSGLAQIDKYFHS------TDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR------E 477 (872)
Q Consensus 412 ~~A~aslGl--I~~~~~~~~l~~l~~yL~s------~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~------~ 477 (872)
..+...+|. ...|+.++++..+.+.+.. .+.....-+...+|.++.... +-+.+...+...+.- +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN-KYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhCC
Confidence 334444454 4468899998888776641 234556667777777765433 234466666655532 2
Q ss_pred CHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHhcC------CCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc-
Q 002870 478 DACIRIGAIMGLGISYAGTQND-QIRHKLSTILND------AKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR- 549 (872)
Q Consensus 478 ~~~v~~gA~lGLGLay~Gt~~~-~i~e~L~~~L~d------~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~- 549 (872)
+......+...+|.+|...++. +..+.+...+.- .. . .....+-..+|.++...++.+.+...++.....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-H-PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-C-HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-C-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3344556778888888877764 344444433320 11 1 122356778899999988876555544433321
Q ss_pred Ccc--ccC-chhHhHHHHHHHhhhcCChhhHHHHHHHHhh
Q 002870 550 SES--ELG-EPLTRLIPLGLGLLYLGKQESVEATAEVSKT 586 (872)
Q Consensus 550 ~~~--~l~-e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~ 586 (872)
... .-+ ....-...+|..+...|+.+++...++....
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000 001 1122233455566677888877776665443
No 106
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=77.70 E-value=59 Score=33.74 Aligned_cols=226 Identities=14% Similarity=0.084 Sum_probs=111.1
Q ss_pred hhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH
Q 002870 420 MILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND 499 (872)
Q Consensus 420 lI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~ 499 (872)
....|+.++++..+.+.+...... .-+...+|.++....+ .+.++..+...+.-.... ..+...+|.+|...++.
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~ 149 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQDPGD--AEAWQFLGITQAENEN-EQAAIVALQRCLELQPNN--LKALMALAVSYTNTSHQ 149 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHccccH
Confidence 345678888888888776533222 3456666666653322 344777776665421111 23566777777766653
Q ss_pred -HHHHHHHHHhc-CCCCchHH------HHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhc
Q 002870 500 -QIRHKLSTILN-DAKSPLDV------IAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYL 571 (872)
Q Consensus 500 -~i~e~L~~~L~-d~~~~~e~------~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~ 571 (872)
+..+.+...+. ++. .... .......+|.++...++.+.+...+.......+.. . ...-...+|..+...
T Consensus 150 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~-~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 150 QDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM-I-DPDLQTGLGVLFHLS 226 (365)
T ss_dssp HHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSS-C-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc-c-CHHHHHHHHHHHHHC
Confidence 44444444442 111 0000 01122345777776666555555555444332221 0 122234456666667
Q ss_pred CChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhH
Q 002870 572 GKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEM 651 (872)
Q Consensus 572 G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~ 651 (872)
|+-+++...++......... ......+|.+|...|+.......+.-+.....+ +.....-+|..+...|+. +.
T Consensus 227 g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~---~~ 299 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPED--YSLWNRLGATLANGDRSEEAVEAYTRALEIQPG--FIRSRYNLGISCINLGAY---RE 299 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCC---HH
T ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHCCCH---HH
Confidence 77777776666554432211 223456777888888865554444443332111 344445555556666665 56
Q ss_pred HHHHHHHHh
Q 002870 652 AIRSLEHLL 660 (872)
Q Consensus 652 ~~~il~~L~ 660 (872)
+.+.+...+
T Consensus 300 A~~~~~~al 308 (365)
T 4eqf_A 300 AVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
No 107
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=77.68 E-value=87 Score=34.22 Aligned_cols=181 Identities=8% Similarity=-0.053 Sum_probs=96.9
Q ss_pred HHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHH
Q 002870 521 FSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLL 600 (872)
Q Consensus 521 ~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~ 600 (872)
.+-..+|.++...++.+.+...++......+ + ......+|..+...|+-+.+...++......... ......+
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~----~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l 316 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHP----T-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY--PPTYYHR 316 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----C-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCC----C-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC--HHHHHHH
Confidence 4567788888888887665555555443221 1 2333345555666666667766666554432111 1234567
Q ss_pred HHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcC--ChhHHhHHHHHHhhh
Q 002870 601 SCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYG--EQNIRRAVPLALGLL 678 (872)
Q Consensus 601 ~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~--~~~VR~ga~lALGL~ 678 (872)
|..|...|+.......+.-+.....+ +......+|..+...|+. +.+...+....... ++.+.. .+|.+
T Consensus 317 ~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~----~l~~~ 387 (537)
T 3fp2_A 317 GQMYFILQDYKNAKEDFQKAQSLNPE--NVYPYIQLACLLYKQGKF---TESEAFFNETKLKFPTLPEVPT----FFAEI 387 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CSHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCTTCTHHHH----HHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCChHHHH----HHHHH
Confidence 78888899876555555444332222 344445566666666766 77888877766543 233333 33444
Q ss_pred ccCCCch-HHHHHHHHhh----cCCchHHHHHHHHHHHHHcCCC
Q 002870 679 CISNPKV-NVMDTLSRLS----HDTDSEVAMAAVISLGLIGSGT 717 (872)
Q Consensus 679 ~agt~~~-~aid~L~~l~----~D~d~~Vr~~AiiAlGlV~aGt 717 (872)
+...++. +++..+.+.. .++......+....+|.+....
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~ 431 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHH
Confidence 4444443 4566665543 2333333334445555555443
No 108
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=76.91 E-value=56 Score=31.67 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=6.9
Q ss_pred HHHHhHhcCCCCHHHH
Q 002870 524 ISLGLIYVGSCNEEVA 539 (872)
Q Consensus 524 LALGLi~lGs~n~~~~ 539 (872)
+.+|.++...++.+.+
T Consensus 75 ~~la~~~~~~~~~~~A 90 (252)
T 2ho1_A 75 AALAVVFQTEMEPKLA 90 (252)
T ss_dssp HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCHHHH
Confidence 3444444444444333
No 109
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=74.34 E-value=91 Score=32.84 Aligned_cols=205 Identities=8% Similarity=-0.027 Sum_probs=116.2
Q ss_pred HHHHHHHhhhhc--cccchhhHHhHhhhcc----CCC-chhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcC----CCCH
Q 002870 411 KMSAAASLGMIL--LWDVDSGLAQIDKYFH----STD-NHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDA 479 (872)
Q Consensus 411 k~~A~aslGlI~--~~~~~~~l~~l~~yL~----s~~-~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~ 479 (872)
...+...+|.++ .|+.+.|+..+.+-+. ..+ ....+.++..+|.++....+ -+.+...+...+. .++.
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~ 220 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ-YEDAISHFQKAYSMAEAEKQP 220 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHcCCh
Confidence 344445566554 5788888776665542 222 45566788888988875433 3457776665553 2345
Q ss_pred HHHHHHHHHHHHHhccCCCH-HHHHHHHHHhc---CCCC-chHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCcccc
Q 002870 480 CIRIGAIMGLGISYAGTQND-QIRHKLSTILN---DAKS-PLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESEL 554 (872)
Q Consensus 480 ~v~~gA~lGLGLay~Gt~~~-~i~e~L~~~L~---d~~~-~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l 554 (872)
.....+...||.+|...++. +..+.+...+. .... +.. ..+-..+|.++...++.+.+...++..++..+. .
T Consensus 221 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~ 297 (383)
T 3ulq_A 221 QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL--PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK-A 297 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-c
Confidence 55566888899999888764 34444444443 1111 222 357788999999888876555554433221111 1
Q ss_pred CchhHhHHHHHHHhhhcCChh--hHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHh
Q 002870 555 GEPLTRLIPLGLGLLYLGKQE--SVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGH 619 (872)
Q Consensus 555 ~e~~~r~~~lglgLl~~G~~e--~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~ 619 (872)
.++........+|.++...++ ..+..++.+...+.+.........+|..|...|+.....+.+.-
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 222222222335666655543 34455555554443333333455788889999997655544443
No 110
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=73.66 E-value=74 Score=31.48 Aligned_cols=18 Identities=6% Similarity=-0.219 Sum_probs=11.0
Q ss_pred HHHHHhhhcCCCHHHHHH
Q 002870 598 TLLSCAYAGTGNVLKVQN 615 (872)
Q Consensus 598 ~~~~lAyaGTGn~~~i~~ 615 (872)
+-+|..|...|+......
T Consensus 152 ~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 152 YEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHccCHHHHHH
Confidence 456777777787543333
No 111
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=73.57 E-value=68 Score=31.04 Aligned_cols=204 Identities=13% Similarity=0.036 Sum_probs=106.1
Q ss_pred HHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHH
Q 002870 521 FSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLL 600 (872)
Q Consensus 521 ~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~ 600 (872)
-+-+.+|.++.-.++.+.+...+.......+. ...-...+|..+...|+-+++...++......... ......+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l 111 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS----SADAHAALAVVFQTEMEPKLADEEYRKALASDSRN--ARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHHHHH
Confidence 45666777777666644433444333322211 12223345666777788788777776655432211 2234567
Q ss_pred HHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhcc
Q 002870 601 SCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCI 680 (872)
Q Consensus 601 ~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~a 680 (872)
+..|...|+.....+.+.-+.....+.........+|..+...|+. +.+.+.+.........+.. +-+.+|.++.
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~~~~~--~~~~la~~~~ 186 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP---AQAKEYFEKSLRLNRNQPS--VALEMADLLY 186 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCSCCHH--HHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCcccHH--HHHHHHHHHH
Confidence 7888899997766666655544111101233344455555556665 7788888776654322222 2234444444
Q ss_pred CCCc-hHHHHHHHHhhc-CCchHHHHHHHHHHHHHcCCCCc-hHHHHHHHHhhhhhccChh
Q 002870 681 SNPK-VNVMDTLSRLSH-DTDSEVAMAAVISLGLIGSGTNN-ARIAGMLRNLSSYYYKDAN 738 (872)
Q Consensus 681 gt~~-~~aid~L~~l~~-D~d~~Vr~~AiiAlGlV~aGt~n-~rv~~~lr~l~s~~~~d~~ 738 (872)
..++ .++++.+.+... +++.. . +...++.+....++ .+....++++......++.
T Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGGGQNA-R--SLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTSCCCH-H--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcH-H--HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 4444 466777777653 33332 1 23444544444443 3455666666554434443
No 112
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=73.39 E-value=34 Score=42.97 Aligned_cols=81 Identities=10% Similarity=0.167 Sum_probs=38.5
Q ss_pred hHHhHHHHHHhhhccCCCch-HHHHHHHHhhcC--CchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhhccChhhHHH
Q 002870 666 NIRRAVPLALGLLCISNPKV-NVMDTLSRLSHD--TDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFC 742 (872)
Q Consensus 666 ~VR~ga~lALGL~~agt~~~-~aid~L~~l~~D--~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~s~~~~d~~~~f~ 742 (872)
.||..+..||--+.. ..+ .+.+.|.+...| -+..||..|++.| +-|+.+ ..++.+++.+...|++...+
T Consensus 493 rvr~aAi~ALr~~~~--~~p~~v~~il~~i~~n~~e~~EvRiaA~~~L----m~t~P~--~~~l~~ia~~l~~E~~~QV~ 564 (1056)
T 1lsh_A 493 RVQAEAIMALRNIAK--RDPRKVQEIVLPIFLNVAIKSELRIRSCIVF----FESKPS--VALVSMVAVRLRREPNLQVA 564 (1056)
T ss_dssp HHHHHHHHTTTTGGG--TCHHHHHHHHHHHHHCTTSCHHHHHHHHHHH----HHTCCC--HHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHhhh--hchHHHHHHHHHHhcCCCCChHHHHHHHHHH----HHHCcC--HHHHHHHHHHHhhCchHHHH
Confidence 455666666554422 222 355566666533 3455665444433 222211 23444444444455555555
Q ss_pred HHHHHhhhhcCC
Q 002870 743 VRIAQGLVHMGK 754 (872)
Q Consensus 743 ~~lAqGll~~G~ 754 (872)
.=+-.-|-.+-+
T Consensus 565 sfv~S~l~sla~ 576 (1056)
T 1lsh_A 565 SFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 555555544443
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=72.42 E-value=39 Score=34.73 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=24.1
Q ss_pred HHHHHHHHhccCCCH-HHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHH
Q 002870 485 AIMGLGISYAGTQND-QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIF 544 (872)
Q Consensus 485 A~lGLGLay~Gt~~~-~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~ 544 (872)
+.+.+|..+...++. +..+.+...+. ++. +. .+-+.||.+++..++.+.+...++
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~----~a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NG----EIGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CH----HHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-ch----hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445555555444443 23333333332 221 11 244555555555555444444443
No 114
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=70.47 E-value=1e+02 Score=31.68 Aligned_cols=219 Identities=11% Similarity=0.051 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhccCCC-HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHh
Q 002870 483 IGAIMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTR 560 (872)
Q Consensus 483 ~gA~lGLGLay~Gt~~-~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r 560 (872)
..+.+.+|.++...++ ++..+.+...+. ++. .. .+-+.+|.++...++.+.+...+....+..+. ....
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~ 134 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HM----EAWQYLGTTQAENEQELLAISALRRCLELKPD----NQTA 134 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC----CHHH
Confidence 3455667777776665 355666666664 332 22 25567788888888876555555544433221 1223
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHH--------------HHHHhhhcCCCHHHHHHHHHhhcccCCC
Q 002870 561 LIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT--------------LLSCAYAGTGNVLKVQNLLGHCAQHHEK 626 (872)
Q Consensus 561 ~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~--------------~~~lAyaGTGn~~~i~~LL~~~~~~~~d 626 (872)
...+|..+...|+.+++...++............-... ..+..| ..|+.......+.-+.....+
T Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~ 213 (368)
T 1fch_A 135 LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPT 213 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcC
Confidence 34456667777888877777666554322111111000 234444 556544333333332221111
Q ss_pred CccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-hHHHHHHHHhh-cCCchHHHH
Q 002870 627 GEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDSEVAM 704 (872)
Q Consensus 627 ~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-~~aid~L~~l~-~D~d~~Vr~ 704 (872)
.........+|..+...|+. +.+.+.+...+........ +-..+|.++...++ .++++.+.+.. .+|+..
T Consensus 214 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--- 285 (368)
T 1fch_A 214 SIDPDVQCGLGVLFNLSGEY---DKAVDCFTAALSVRPNDYL--LWNKLGATLANGNQSEEAVAAYRRALELQPGYI--- 285 (368)
T ss_dssp SCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---
T ss_pred cccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCcCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---
Confidence 00122233344444555555 6777777766544322222 22334444433343 35666666553 344432
Q ss_pred HHHHHHHHHcCCCCc
Q 002870 705 AAVISLGLIGSGTNN 719 (872)
Q Consensus 705 ~AiiAlGlV~aGt~n 719 (872)
.+...+|.+....++
T Consensus 286 ~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 286 RSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCC
Confidence 223445555544443
No 115
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=65.52 E-value=1.1e+02 Score=30.25 Aligned_cols=174 Identities=16% Similarity=0.108 Sum_probs=93.0
Q ss_pred CchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCC------CCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHhcC--
Q 002870 441 DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR------EDACIRIGAIMGLGISYAGTQND-QIRHKLSTILND-- 511 (872)
Q Consensus 441 ~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~------~~~~v~~gA~lGLGLay~Gt~~~-~i~e~L~~~L~d-- 511 (872)
+.....-++..+|.++.... +.+.+..++...+.- ++.....-+...+|.+|...++. +..+.+...+.-
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQG-RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34455566777777765332 234577777666541 12344456777788888776653 333444333320
Q ss_pred ----CCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcC-cc--ccCchhHh--HHHHHHHhhhcCChhhHHHHHH
Q 002870 512 ----AKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRS-ES--ELGEPLTR--LIPLGLGLLYLGKQESVEATAE 582 (872)
Q Consensus 512 ----~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~-~~--~l~e~~~r--~~~lglgLl~~G~~e~a~~ll~ 582 (872)
.... ....+-..+|.++...++.+.+...++...+.. .. . ..+... ...+|..+...|+-+++...++
T Consensus 101 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 101 KTLGKDHP--AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-DHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHCTTCH--HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHhCCCCh--HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1112 223567788999988888765555554433211 00 0 112222 2334555555666667666665
Q ss_pred HHhhh------hhhhhhhhhHHHHHHhhhcCCCHHHHHHHHH
Q 002870 583 VSKTF------NEKIRKYCDMTLLSCAYAGTGNVLKVQNLLG 618 (872)
Q Consensus 583 ~L~~~------~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~ 618 (872)
..... +++.........+|..|...|+.....+.+.
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 219 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK 219 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 54433 2122233345567888889999655444443
No 116
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=63.62 E-value=83 Score=28.17 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=4.8
Q ss_pred HHHhhhcCCCH
Q 002870 600 LSCAYAGTGNV 610 (872)
Q Consensus 600 ~~lAyaGTGn~ 610 (872)
+|.+|...|+.
T Consensus 116 ~a~~~~~~~~~ 126 (186)
T 3as5_A 116 LGVALDNLGRF 126 (186)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHcCcH
Confidence 33444444443
No 117
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=63.36 E-value=1.4e+02 Score=30.68 Aligned_cols=243 Identities=10% Similarity=0.024 Sum_probs=122.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHH
Q 002870 466 ALALLSEYVGREDACIRIGAIMGLGISYAGTQND-QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIF 544 (872)
Q Consensus 466 ~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~-~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~ 544 (872)
++........ .++....-+-+-++-+|+..++. ++.+.+.. .+ +... .+-..++..+.+.++.+.+-..++
T Consensus 18 ai~~~~~~~~-~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~-~~~~--~a~~~la~~~~~~~~~~~A~~~l~ 89 (291)
T 3mkr_A 18 CINEAQRVKP-SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SS-APEL--QAVRMFAEYLASHSRRDAIVAELD 89 (291)
T ss_dssp HHHHHHHSCC-CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TS-CHHH--HHHHHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHhccc-CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cC-ChhH--HHHHHHHHHHcCCCcHHHHHHHHH
Confidence 5555544333 33333333444455667666653 34433322 21 2233 344556666777776555444455
Q ss_pred HHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccC
Q 002870 545 ALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHH 624 (872)
Q Consensus 545 ~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~ 624 (872)
.++.....+ ... .-...+|..+...|+-+++...++. -. ........+..|...|+.....+.+.-+....
T Consensus 90 ~ll~~~~~P-~~~-~~~~~la~~~~~~g~~~~Al~~l~~---~~----~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 90 REMSRSVDV-TNT-TFLLMAASIYFYDQNPDAALRTLHQ---GD----SLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHSCCCC-SCH-HHHHHHHHHHHHTTCHHHHHHHHTT---CC----SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcccCC-CCH-HHHHHHHHHHHHCCCHHHHHHHHhC---CC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 444321011 222 2244566777777888877776654 11 12244556778889999776655555444322
Q ss_pred CCCccchhhhHhHhhhhhh----cchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-hHHHHHHHHh-hcCC
Q 002870 625 EKGEAYQGPAVLGIAMVAM----AEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRL-SHDT 698 (872)
Q Consensus 625 ~d~~~vrr~Avl~iglI~~----~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-~~aid~L~~l-~~D~ 698 (872)
.+ .. ..-++.+++.+ ++. +.+..+++.+......+...- ..+|.++...++ .++...+.+. ..||
T Consensus 161 p~--~~--~~~l~~a~~~l~~~~~~~---~eA~~~~~~~l~~~p~~~~~~--~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 161 ED--AT--LTQLATAWVSLAAGGEKL---QDAYYIFQEMADKCSPTLLLL--NGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp TT--CH--HHHHHHHHHHHHHCTTHH---HHHHHHHHHHHHHSCCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cC--cH--HHHHHHHHHHHHhCchHH---HHHHHHHHHHHHhCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 22 22 22333333333 333 778888888776543332222 233333333333 4566677764 5677
Q ss_pred chHHHHHHHHHHHHHc--CCCCchHHHHHHHHhhhhhccCh
Q 002870 699 DSEVAMAAVISLGLIG--SGTNNARIAGMLRNLSSYYYKDA 737 (872)
Q Consensus 699 d~~Vr~~AiiAlGlV~--aGt~n~rv~~~lr~l~s~~~~d~ 737 (872)
++.-. ...+|.+. .|.....+..+++++....-.+|
T Consensus 232 ~~~~~---l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 232 GHPET---LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp TCHHH---HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred CCHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 65322 33344333 45444446678877666433343
No 118
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=63.20 E-value=1.4e+02 Score=36.13 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcccCC-C------C---ccc-hhhhHhHhhhhhhcc-----hhh----H-hHHHHHHHHHhhcCChhHHh
Q 002870 611 LKVQNLLGHCAQHHE-K------G---EAY-QGPAVLGIAMVAMAE-----ELG----L-EMAIRSLEHLLQYGEQNIRR 669 (872)
Q Consensus 611 ~~i~~LL~~~~~~~~-d------~---~~v-rr~Avl~iglI~~~~-----~~g----~-e~~~~il~~L~~~~~~~VR~ 669 (872)
.+|+.|++.+..+.. + + +.. +.-|+++|.-++... ++. . ..+...+..|+.+.++.||+
T Consensus 545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vrr 624 (778)
T 3opb_A 545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQR 624 (778)
T ss_dssp THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHH
T ss_pred cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHH
Confidence 577888887762211 0 0 001 457888888777764 221 1 13455666777788999999
Q ss_pred HHHHHHhhhccCCCc----------hHH---HHHHHHhhcCCchHHHHHHHHHHHHHcCCC
Q 002870 670 AVPLALGLLCISNPK----------VNV---MDTLSRLSHDTDSEVAMAAVISLGLIGSGT 717 (872)
Q Consensus 670 ga~lALGL~~agt~~----------~~a---id~L~~l~~D~d~~Vr~~AiiAlGlV~aGt 717 (872)
+++-++.-+.+.... ++. ++.|-.+++..|..+|++|.-|++.+-.+.
T Consensus 625 AA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 625 STLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp HHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 999999877653322 121 567888898889999999999999885443
No 119
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=62.83 E-value=1.3e+02 Score=30.04 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHhc-CCCCchHHHHH
Q 002870 444 VIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-QIRHKLSTILN-DAKSPLDVIAF 521 (872)
Q Consensus 444 ~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~-~i~e~L~~~L~-d~~~~~e~~~~ 521 (872)
...-.++.+|..+.... +.+.+..++...+..... ...+...+|.++.-.++. +..+.+...+. ++. ..+
T Consensus 19 ~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~---- 90 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLA-NLAEAALAFEAVCQAAPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIA---- 90 (327)
T ss_dssp GGSSCHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH----
T ss_pred hhhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHH----
Confidence 33444555555443222 123355555554432111 123445555555554442 33344443332 221 111
Q ss_pred HHHHHHhHhcCCCCHHHHHHHHHH
Q 002870 522 SAISLGLIYVGSCNEEVAQAIIFA 545 (872)
Q Consensus 522 AaLALGLi~lGs~n~~~~e~ll~~ 545 (872)
+-..+|.++...++.+.+...+..
T Consensus 91 ~~~~la~~~~~~~~~~~A~~~~~~ 114 (327)
T 3cv0_A 91 VHAALAVSHTNEHNANAALASLRA 114 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334455555555555444444433
No 120
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=60.87 E-value=1.1e+02 Score=28.57 Aligned_cols=203 Identities=9% Similarity=-0.043 Sum_probs=101.3
Q ss_pred HHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHH
Q 002870 522 SAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLS 601 (872)
Q Consensus 522 AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~ 601 (872)
+-+.+|.++.-.++.+.+...++......+. .......+|..+...|+-+++...++......... ......+|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~ 83 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPK----NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS--AEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHHH
Confidence 4566777777777765555545443332221 12233345666667777777766666554432111 12335577
Q ss_pred HhhhcC-CCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhcc
Q 002870 602 CAYAGT-GNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCI 680 (872)
Q Consensus 602 lAyaGT-Gn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~a 680 (872)
..|... |+.......+.-+.....+.........+|..+...|+. +.+.+.+....+....+... -..+|.++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~--~~~la~~~~ 158 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF---GLAEAYLKRSLAAQPQFPPA--FKELARTKM 158 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHSTTCHHH--HHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCchH--HHHHHHHHH
Confidence 788889 987665555555444111101234445555566666666 77778877766543222222 223333333
Q ss_pred CCCc-hHHHHHHHHhh-cCC-chHHHHHHHHHHHHHcCCCC-chHHHHHHHHhhhhhccChh
Q 002870 681 SNPK-VNVMDTLSRLS-HDT-DSEVAMAAVISLGLIGSGTN-NARIAGMLRNLSSYYYKDAN 738 (872)
Q Consensus 681 gt~~-~~aid~L~~l~-~D~-d~~Vr~~AiiAlGlV~aGt~-n~rv~~~lr~l~s~~~~d~~ 738 (872)
..++ .++++.+.+.. .++ +..... ..++.+....+ ......+++.+.+....++.
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDL---LLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHH---HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHH---HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 3333 35666666553 233 322221 22223322223 34555666666554333443
No 121
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=59.15 E-value=1.3e+02 Score=29.01 Aligned_cols=143 Identities=15% Similarity=0.070 Sum_probs=78.5
Q ss_pred CchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCC------CCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHhc---
Q 002870 441 DNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR------EDACIRIGAIMGLGISYAGTQND-QIRHKLSTILN--- 510 (872)
Q Consensus 441 ~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~------~~~~v~~gA~lGLGLay~Gt~~~-~i~e~L~~~L~--- 510 (872)
+....+-++..+|.++.... +.+.+...+...+.- ++......+...+|.+|.-.++. +..+.+...+.
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 38 DHPDVATMLNILALVYRDQN-KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 33455667777777766433 234477666665532 33345556788888888877764 33333333331
Q ss_pred ---CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc----CccccCchhHhHHHHHHHhhhcCChhhHHHHHHH
Q 002870 511 ---DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR----SESELGEPLTRLIPLGLGLLYLGKQESVEATAEV 583 (872)
Q Consensus 511 ---d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~----~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~ 583 (872)
++..+ ....+-..+|.++.-.++.+.+...++..+.. ....-.........+|..+...|+-+++...++.
T Consensus 117 ~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 117 KVLGKFHP--DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp HHHCTTCH--HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcCCCCh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11112 12357788899998888876555554443322 0000011122233455666667887777776665
Q ss_pred Hhh
Q 002870 584 SKT 586 (872)
Q Consensus 584 L~~ 586 (872)
...
T Consensus 195 ~l~ 197 (283)
T 3edt_B 195 ILT 197 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 122
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=57.26 E-value=38 Score=39.71 Aligned_cols=52 Identities=12% Similarity=-0.055 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhcchHHHHHHHHHHHHhh
Q 002870 239 MLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARH 294 (872)
Q Consensus 239 ~~vl~~~~~iy~k~~~~~~al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~larq 294 (872)
.+-+..+.++..+.+++..|..+++++++++...+++.+++. ...|+.|||+
T Consensus 723 ~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~----~~~A~~lA~~ 774 (814)
T 3mkq_A 723 KEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQR----FSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCC----hHHHHHHHHH
Confidence 345666777777888888899999999999999999887643 4456666665
No 123
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=57.21 E-value=1.9e+02 Score=30.31 Aligned_cols=198 Identities=14% Similarity=0.075 Sum_probs=108.7
Q ss_pred ccccchhhHHhHhhhcc----CCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcC----CCC-HHHHHHHHHHHHHH
Q 002870 422 LLWDVDSGLAQIDKYFH----STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----RED-ACIRIGAIMGLGIS 492 (872)
Q Consensus 422 ~~~~~~~~l~~l~~yL~----s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~-~~v~~gA~lGLGLa 492 (872)
..|+.++|+..+.+-+. ..++...+-+...+|.++.... +.+.++..+...+. ..+ ..-...+...||.+
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK-QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 35677777766655443 2456777888888998887543 33456666655543 122 33445677789999
Q ss_pred hccCCCH-HHHHHHHHHhc---CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc-CccccCchhHhHHHHHHH
Q 002870 493 YAGTQND-QIRHKLSTILN---DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR-SESELGEPLTRLIPLGLG 567 (872)
Q Consensus 493 y~Gt~~~-~i~e~L~~~L~---d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~-~~~~l~e~~~r~~~lglg 567 (872)
|...++- +..+.+...+. ... .......+-..||.++...++.+-+...++...+- ....-.........+|..
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQ-NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 9887764 34444444332 111 11233456778899998888765544444332221 000001112222334445
Q ss_pred hhhcCChhhHHHHHHHHhhh----hhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcc
Q 002870 568 LLYLGKQESVEATAEVSKTF----NEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQ 622 (872)
Q Consensus 568 Ll~~G~~e~a~~ll~~L~~~----~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~ 622 (872)
....|+.+++...++..... +++.... ....++..|...|+...+++-+.++..
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKE-LFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH-HHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 55566666666655543322 2332222 345667777788877666666666654
No 124
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=57.18 E-value=1e+02 Score=31.26 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=56.5
Q ss_pred hhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch-HHHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 002870 638 IAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV-NVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716 (872)
Q Consensus 638 iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~-~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aG 716 (872)
+|-+....| +.+...+...+.+.|+.+||.+..++ +.+....+. .....+..+.+|+..+|+.+.--+|.-++.-
T Consensus 121 ~g~~~~~~p---~~~~~~l~~W~~s~~~w~rR~ai~~~-l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 121 LGDIFLKHP---ELISAYIPKWIASDNIWLQRAAILFQ-LKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT 196 (232)
T ss_dssp HHHHHHHCG---GGGGGTHHHHHHSSCHHHHHHHHHTT-TTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCH---HHHHHHHHHHhcCCchHHHHHHHHHH-HHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 344444555 44556778888999999999887765 444433443 3445677889999999998755556555443
Q ss_pred CCchHHHHHHHH
Q 002870 717 TNNARIAGMLRN 728 (872)
Q Consensus 717 t~n~rv~~~lr~ 728 (872)
. ...+..++.+
T Consensus 197 ~-p~~v~~fl~~ 207 (232)
T 3jxy_A 197 N-PDVVWEYVQN 207 (232)
T ss_dssp C-HHHHHHHHHH
T ss_pred C-HHHHHHHHHH
Confidence 2 2356666665
No 125
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=56.81 E-value=1.9e+02 Score=30.04 Aligned_cols=246 Identities=13% Similarity=-0.020 Sum_probs=127.9
Q ss_pred hHHHHHHHhhhhccccchhhHHhHhhhc---cCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcC----CCCHHHH
Q 002870 410 GKMSAAASLGMILLWDVDSGLAQIDKYF---HSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACIR 482 (872)
Q Consensus 410 ~k~~A~aslGlI~~~~~~~~l~~l~~yL---~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v~ 482 (872)
+......+.-.+..|+.++++..+..-+ +..++...+.++..+|.++.... +.+.+...+...+. ..+....
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG-ELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3444444444556789998888766544 33445566677778887765332 23446666665543 2344555
Q ss_pred HHHHHHHHHHhccCCCH-HHHHHHHHHhc---C-CCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCc-cccCc
Q 002870 483 IGAIMGLGISYAGTQND-QIRHKLSTILN---D-AKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSE-SELGE 556 (872)
Q Consensus 483 ~gA~lGLGLay~Gt~~~-~i~e~L~~~L~---d-~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~-~~l~e 556 (872)
..+...+|.++...++. +..+.+...+. . ..........+...+|.++.-.++.+.+...+.......+ .....
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 56677888888777764 23333333321 1 1110011224556688888888887766666554333211 11011
Q ss_pred hhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhh--h-hhhhhH--HHHHHhhhcCCCHHHHHHHHHhhcccCCCCccch
Q 002870 557 PLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEK--I-RKYCDM--TLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQ 631 (872)
Q Consensus 557 ~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~--i-~r~~~~--~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vr 631 (872)
.......+|......|+.+++...++........ . ...... ...+..|...|+.......+.-+...........
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 1112233444555667777777777665433111 0 111111 1333447789998887777776654322100111
Q ss_pred --hhhHhHhhhhhhcchhhHhHHHHHHHHH
Q 002870 632 --GPAVLGIAMVAMAEELGLEMAIRSLEHL 659 (872)
Q Consensus 632 --r~Avl~iglI~~~~~~g~e~~~~il~~L 659 (872)
....++-.++..|+. +.+.+.+...
T Consensus 253 ~~~~~~la~~~~~~g~~---~~A~~~l~~a 279 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEF---EPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHHHHHTTCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHH
Confidence 122344445555665 5666665544
No 126
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=55.69 E-value=47 Score=37.01 Aligned_cols=99 Identities=10% Similarity=0.068 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCChhhh-H----HHhhc----cchHHHHHHHHhhcccCCCCChHHHHHHHHHHHHcc
Q 002870 182 QEIVAFHMKHNAEPEAVDLLMEVEDLDLL-V----EHVDA----TNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKF 252 (872)
Q Consensus 182 ~~iv~~~l~~n~e~eAvdlalE~~~ld~i-~----~~vd~----~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~k~ 252 (872)
+..|..||+.|.+.||+=||. ...-+.+ + .|+.+ +.|.|++..+++ .+-.+++.. ...
T Consensus 160 e~AV~~cl~~~r~adAllLA~-~gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~-------~n~~d~V~~-----~~l 226 (399)
T 2pm7_A 160 KSAVKNSLENDLMMEAMVIAL-DSNNERLKESVKNAYFAKYGSKSSLSRILYSISK-------REVDDLVEN-----LDV 226 (399)
T ss_dssp HHHHHHHHTTTCHHHHHHHHT-TCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHT-------TCCHHHHHH-----BCG
T ss_pred HHHHHHHHHCCChHHHHHHHH-hcCHHHHHHHHHHHHHHhcccCchHHHHHHHHHc-------cCHHHHHhc-----CCh
Confidence 456777888888888887776 3333444 2 34432 245565533321 000112211 134
Q ss_pred CCHHHHHHHHHhCCChH--HHHHHHHhcchH------HHHHHHHHHHHh
Q 002870 253 EEFPNALQIALFLDNMQ--YVKQIFTSCDDL------LRKKQFCYILAR 293 (872)
Q Consensus 253 ~~~~~al~~al~l~d~~--~i~~i~~~~~d~------~~~~Qlaf~lar 293 (872)
++|.+++...+--.+++ ...++...+.|. ...-.+||++|.
T Consensus 227 ~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag 275 (399)
T 2pm7_A 227 SQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAG 275 (399)
T ss_dssp GGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhC
Confidence 45666666665555555 555555444222 234456677663
No 127
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=55.56 E-value=11 Score=45.00 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCch------HHH-HHHHHhhcCCchHHHHHHHHHHHHHcC
Q 002870 650 EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV------NVM-DTLSRLSHDTDSEVAMAAVISLGLIGS 715 (872)
Q Consensus 650 e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~------~ai-d~L~~l~~D~d~~Vr~~AiiAlGlV~a 715 (872)
+.+..+++.| ++.+|..|.++|.||+-++.++... +++ .+|.++..|++..||..|.-+++-+..
T Consensus 34 ~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 34 DKILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp HTTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4556677764 7788999999999999987543322 223 346778899999999998888875543
No 128
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=54.11 E-value=40 Score=43.75 Aligned_cols=101 Identities=17% Similarity=0.150 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcC--------------------ChhhhHHHhhccch---HHHHHHHHhhcccCCCCC
Q 002870 181 VQEIVAFHMKHNAEPEAVDLLMEVE--------------------DLDLLVEHVDATNF---KRTCLYLTSAAKYLPGPD 237 (872)
Q Consensus 181 v~~iv~~~l~~n~e~eAvdlalE~~--------------------~ld~i~~~vd~~~~---~rv~~Yl~~~~~~~~~p~ 237 (872)
..++..++.+.|.+.+|+.++..++ +++.++.+++..+. .++-.|+.+.-
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg------- 1209 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK------- 1209 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC-------
Confidence 3447788888999999999996543 44455555544332 22222222222
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHHhCCChHHHHHHHHhcchHHHHHHHHHHH
Q 002870 238 DMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYIL 291 (872)
Q Consensus 238 ~~~vl~~~~~iy~k~~~~~~al~~al~l~d~~~i~~i~~~~~d~~~~~Qlaf~l 291 (872)
-++-+...|.+-+.|..+..|.+++++.+...+.+.+..++..-+|.+|.+
T Consensus 1210 ---~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1210 ---MYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC 1260 (1630)
T ss_pred ---CHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334566667777889999999999999999999999888877777777765
No 129
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=54.09 E-value=49 Score=33.96 Aligned_cols=49 Identities=18% Similarity=0.095 Sum_probs=25.4
Q ss_pred hcCChhHHhHHHHHHhhhccCCCch-H------HHHHHHHhhc-CCchHHHHHHHHH
Q 002870 661 QYGEQNIRRAVPLALGLLCISNPKV-N------VMDTLSRLSH-DTDSEVAMAAVIS 709 (872)
Q Consensus 661 ~~~~~~VR~ga~lALGL~~agt~~~-~------aid~L~~l~~-D~d~~Vr~~AiiA 709 (872)
.++++.++..++.||.-+..+++.. . ++..|-++.+ .++..++.+|.-+
T Consensus 62 ~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~a 118 (233)
T 3tt9_A 62 KVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGL 118 (233)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHH
Confidence 4556666666666666665554322 1 2344444443 3455555554433
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=53.58 E-value=88 Score=33.04 Aligned_cols=135 Identities=10% Similarity=0.000 Sum_probs=83.0
Q ss_pred hHHHHHHHhhhhccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHH
Q 002870 410 GKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGL 489 (872)
Q Consensus 410 ~k~~A~aslGlI~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGL 489 (872)
..+....+.-++-.|+.+++...+..-+....... +.+.+|+++.... .-+.++..|.+.+..+++.....+.+-|
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~---~~~~~a~l~~~~~-r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL---VAWMKAVVYGAAE-RWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH---HHHHHHHHHHHTT-CHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHcC-CHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 44455555556667889999988887765444444 5566666655332 2234777777766655566555677777
Q ss_pred HHHhccCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc
Q 002870 490 GISYAGTQND-QIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR 549 (872)
Q Consensus 490 GLay~Gt~~~-~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~ 549 (872)
|.++...++. +..+.+...+..+ ..+....-+.+.+|+++...|..+.+..+++.+...
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7777776654 5555565555322 101111236677777777778877777777776654
No 131
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=52.72 E-value=1.3e+02 Score=26.88 Aligned_cols=17 Identities=0% Similarity=0.069 Sum_probs=9.6
Q ss_pred ccccchhhHHhHhhhcc
Q 002870 422 LLWDVDSGLAQIDKYFH 438 (872)
Q Consensus 422 ~~~~~~~~l~~l~~yL~ 438 (872)
..|+.++++..+.+.+.
T Consensus 20 ~~~~~~~A~~~~~~~~~ 36 (186)
T 3as5_A 20 KAGRYSQAVMLLEQVYD 36 (186)
T ss_dssp HHTCHHHHHHHHTTTCC
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 34566666666655543
No 132
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=51.86 E-value=89 Score=36.51 Aligned_cols=82 Identities=13% Similarity=0.064 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCCHHHHHHHH----------HhcCChhhhHHHhhccchHHHHHHHHhhcccCCCCChHHHHHHHHHHHHc
Q 002870 182 QEIVAFHMKHNAEPEAVDLL----------MEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLK 251 (872)
Q Consensus 182 ~~iv~~~l~~n~e~eAvdla----------lE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~k 251 (872)
..+..|+-+++...+|+.+. ++.++++.-.++ +..+ ++...-+.+-+.+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~----------------~~~~---~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDL----------------LTDE---SAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHH----------------HTTC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHH----------------HHhh---CcHhHHHHHHHHHHH
Confidence 67777777777777776444 444444322222 2222 233566777777778
Q ss_pred cCCHHHHHHHHHhCCChHHHHHHHHhcchHH
Q 002870 252 FEEFPNALQIALFLDNMQYVKQIFTSCDDLL 282 (872)
Q Consensus 252 ~~~~~~al~~al~l~d~~~i~~i~~~~~d~~ 282 (872)
.+++..|.+|..+++|.+.+..++...++..
T Consensus 694 ~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~ 724 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHDLESLFLLHSSFNNKE 724 (814)
T ss_dssp TTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHccChhhhHHHHHHcCCHH
Confidence 8888888888888888887777776665543
No 133
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=50.28 E-value=2.9e+02 Score=30.41 Aligned_cols=18 Identities=17% Similarity=-0.057 Sum_probs=13.2
Q ss_pred hhcccceeeeecCCCCcc
Q 002870 804 LAMQPRMLLTVDENLKPL 821 (872)
Q Consensus 804 lA~~Pr~li~ld~~l~~~ 821 (872)
....|..++++|.++...
T Consensus 382 ~~~~p~~~~~~d~~~~~~ 399 (474)
T 4abn_A 382 EEKVPFTFGLVDSDGPCY 399 (474)
T ss_dssp TTCCSEEEEEESSSSCCE
T ss_pred CCCCceEEEEEcCCCCEE
Confidence 456788888888877664
No 134
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=49.45 E-value=65 Score=29.96 Aligned_cols=21 Identities=14% Similarity=-0.105 Sum_probs=9.8
Q ss_pred HHHHhhhcCChhhHHHHHHHH
Q 002870 564 LGLGLLYLGKQESVEATAEVS 584 (872)
Q Consensus 564 lglgLl~~G~~e~a~~ll~~L 584 (872)
+|..+...|+.+++...++..
T Consensus 46 la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 46 KADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHh
Confidence 344444455555555444443
No 135
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=49.22 E-value=2e+02 Score=28.25 Aligned_cols=230 Identities=14% Similarity=0.086 Sum_probs=98.7
Q ss_pred HHHHHHHhccCCC-HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc-CccccC-chhHhH
Q 002870 486 IMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR-SESELG-EPLTRL 561 (872)
Q Consensus 486 ~lGLGLay~Gt~~-~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~-~~~~l~-e~~~r~ 561 (872)
.+-.|..+...++ ++..+.+...+. ++. +.+....+...+|.++.-.++.+.+...++..... ....-. ....-.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3334555554444 233444444443 222 22322345566677777666655444433322211 000000 111122
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHh----hhhhhhhhhhhHHHHHHhhhcCCC--------------------HHHHHHH-
Q 002870 562 IPLGLGLLYLGKQESVEATAEVSK----TFNEKIRKYCDMTLLSCAYAGTGN--------------------VLKVQNL- 616 (872)
Q Consensus 562 ~~lglgLl~~G~~e~a~~ll~~L~----~~~~~i~r~~~~~~~~lAyaGTGn--------------------~~~i~~L- 616 (872)
..+|..+...|+-+++...++... ..+++.........+|..|...|+ .....+.
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 234455555666665554443322 222333333344556666666666 3322222
Q ss_pred ---HHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHh----hcCChhHHhHHHHHHhhhccCCCch-HHH
Q 002870 617 ---LGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLL----QYGEQNIRRAVPLALGLLCISNPKV-NVM 688 (872)
Q Consensus 617 ---L~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~----~~~~~~VR~ga~lALGL~~agt~~~-~ai 688 (872)
+..+....+..........+|......++. +.+.+.+.... ...++.....+-..+|.++...++. +++
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF---RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 222221111000111223333344444554 44554444332 3344444444555666665554543 445
Q ss_pred HHHHHhh----cCCchHHHHHHHHHHHHHcCCCCc
Q 002870 689 DTLSRLS----HDTDSEVAMAAVISLGLIGSGTNN 719 (872)
Q Consensus 689 d~L~~l~----~D~d~~Vr~~AiiAlGlV~aGt~n 719 (872)
+.+.+.. ...+......+...+|.+....++
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence 5554432 233344444556667776666664
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=48.05 E-value=1.2e+02 Score=32.07 Aligned_cols=133 Identities=14% Similarity=-0.021 Sum_probs=72.8
Q ss_pred HHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHH
Q 002870 522 SAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLS 601 (872)
Q Consensus 522 AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~ 601 (872)
..++++.+++..++.+-+..++..+.. .. .+.. ....+|+-+.-.|+-+.+...++.....++|.......+.+|
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~---~~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG 178 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPV---AG-SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHG 178 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCC---TT-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh---cC-CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHH
Confidence 344455555555555555555543221 11 1223 333444444445666677666665554455555555677889
Q ss_pred HhhhcCCCHHHHHHHHHhhcccCC-CCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhc
Q 002870 602 CAYAGTGNVLKVQNLLGHCAQHHE-KGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQY 662 (872)
Q Consensus 602 lAyaGTGn~~~i~~LL~~~~~~~~-d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~ 662 (872)
+++...|+.......++-..+... +.-........|+++.-.|++ +.+...++.+...
T Consensus 179 ~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~---deA~~~l~~a~a~ 237 (282)
T 4f3v_A 179 VAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE---SAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhc
Confidence 999999987655555554433221 100112334566666667776 7777777777554
No 137
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=47.88 E-value=2.6e+02 Score=29.09 Aligned_cols=63 Identities=10% Similarity=-0.061 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhccCCC-HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHH
Q 002870 481 IRIGAIMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIF 544 (872)
Q Consensus 481 v~~gA~lGLGLay~Gt~~-~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~ 544 (872)
....+.+.+|..+...++ ++..+.+...+. ++. +.+....+-..+|.++.-.++.+.+...++
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHK 110 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 333444455555544443 234444444443 221 222223344555555555555444333333
No 138
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=47.48 E-value=1.8e+02 Score=34.18 Aligned_cols=212 Identities=13% Similarity=0.037 Sum_probs=102.9
Q ss_pred ccCCCchhHHHHHHHHHHhhc------CC---CCChhhHHHHHH--------hhcCCC-CHHHHHHHHHHHHHHhccCCC
Q 002870 437 FHSTDNHVIAGALLGVGIVNC------GI---RNDCDPALALLS--------EYVGRE-DACIRIGAIMGLGISYAGTQN 498 (872)
Q Consensus 437 L~s~~~~~k~GAllaLGli~~------G~---~~e~d~~~~lL~--------~~L~~~-~~~v~~gA~lGLGLay~Gt~~ 498 (872)
|.++.=++|.||.+||--+-. |. .+. |-+..+|- +|+.+. -.+||-.++-.||.+ ...+
T Consensus 183 LFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL--~hLp 259 (800)
T 3oc3_A 183 LLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI--YPLI 259 (800)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH--TTTS
T ss_pred hcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH--HhCC
Confidence 455666788888888765432 11 122 43554443 344444 368999999999987 4444
Q ss_pred HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCC-----HHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcC
Q 002870 499 DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCN-----EEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLG 572 (872)
Q Consensus 499 ~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n-----~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G 572 (872)
++ ...|...+. .....-|+++++.|||.-+ .+ +.+++.++.-|. +. +|.+...+|-+ |+-+-
T Consensus 260 ~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~Ld~Vv~aVL~GL~---D~--DDDVRAVAAet--LiPIA 327 (800)
T 3oc3_A 260 GP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVEDKDGLCRKLVSLLS---SP--DEDIKLLSAEL--LCHFP 327 (800)
T ss_dssp CS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCCHHHHHHHHHHHTT---CS--SHHHHHHHHHH--HTTSC
T ss_pred hh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHHHHHHHHHHHhhcC---Cc--ccHHHHHHHHH--hhhhc
Confidence 33 333433332 1122578888888888744 21 234444444332 11 23343333333 33332
Q ss_pred ChhhHHHHHHH----Hhhhhhhhhhhhh-HH---HHHHhhhc--CCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhh
Q 002870 573 KQESVEATAEV----SKTFNEKIRKYCD-MT---LLSCAYAG--TGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVA 642 (872)
Q Consensus 573 ~~e~a~~ll~~----L~~~~~~i~r~~~-~~---~~~lAyaG--TGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~ 642 (872)
++++.+.+++. |.+. |+++...+ +| +--|.+-. ..+...|.+|..+...... .||++++-.+.-+.
T Consensus 328 ~p~~l~~LL~iLWd~L~~L-DDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtIT---SVR~AVL~TL~tfL 403 (800)
T 3oc3_A 328 ITDSLDLVLEKCWKNIESE-ELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVP---EVRTSILNMVKNLS 403 (800)
T ss_dssp CSSTHHHHHHHHHHHHHTC-CSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSH---HHHHHHHHHTTTCC
T ss_pred chhhHHHHHHHHHHHhhhh-cccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcH---HHHHHHHHHHHHHH
Confidence 66767766654 3333 33333222 22 11112111 1122344455555543333 67766555543332
Q ss_pred hcchhhHhHHHH-HHHHHhhcCChhHHhHHHH
Q 002870 643 MAEELGLEMAIR-SLEHLLQYGEQNIRRAVPL 673 (872)
Q Consensus 643 ~~~~~g~e~~~~-il~~L~~~~~~~VR~ga~l 673 (872)
. ..+.| +++.++--.++.||..+--
T Consensus 404 --~----~~~LRLIFQNILLE~neeIl~lS~~ 429 (800)
T 3oc3_A 404 --E----ESIDFLVAEVVLIEEKDEIREMAIK 429 (800)
T ss_dssp --C----HHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred --h----hhHHHHHHHHHHhCCcHHHHHHHHH
Confidence 1 33444 3444444456666664433
No 139
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=46.96 E-value=2.8e+02 Score=32.41 Aligned_cols=123 Identities=10% Similarity=0.006 Sum_probs=53.4
Q ss_pred HHHHHHHHHhccCCC-HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhH
Q 002870 484 GAIMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRL 561 (872)
Q Consensus 484 gA~lGLGLay~Gt~~-~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~ 561 (872)
.+.+.+|.+|...++ ++..+.+...+. ++. +.+ +-+.+|.++...++.+.+...++..+...+. ...-.
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~----~~~~~ 504 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWR----LVWYRAVAELLTGDYDSATKHFTEVLDTFPG----ELAPK 504 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT----CSHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHH
Confidence 355666666655544 344455555553 221 112 4455666666556544443333333222211 11222
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHH
Q 002870 562 IPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLG 618 (872)
Q Consensus 562 ~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~ 618 (872)
..+|..+...|+-++ ...++.....+... ..+.+-+|.+|...|+.....+.+.
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQTVWSTNDGV--ISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCChHH-HHHHHHHHHhCCch--HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444555555555 44333322221110 1123445566666666544333333
No 140
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=46.53 E-value=1.6e+02 Score=32.55 Aligned_cols=70 Identities=13% Similarity=-0.007 Sum_probs=38.6
Q ss_pred hccccc-hhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccC
Q 002870 421 ILLWDV-DSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGT 496 (872)
Q Consensus 421 I~~~~~-~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt 496 (872)
...++. ++|+..+.+-+...... ..+.+.+|.++.... +-+.+...+...+.-... ..+...||.+|...
T Consensus 113 ~~~g~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~---~~~~~~lg~~~~~~ 183 (474)
T 4abn_A 113 NVTPDYSPEAEVLLSKAVKLEPEL--VEAWNQLGEVYWKKG-DVTSAHTCFSGALTHCKN---KVSLQNLSMVLRQL 183 (474)
T ss_dssp TSSSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHT-CHHHHHHHHHHHHTTCCC---HHHHHHHHHHHTTC
T ss_pred HhccccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC---HHHHHHHHHHHHHh
Confidence 345677 77777776665432222 235555666554332 234466666666654322 25666777777655
No 141
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=46.29 E-value=2.7e+02 Score=28.78 Aligned_cols=211 Identities=12% Similarity=-0.016 Sum_probs=105.7
Q ss_pred hhHHHHHHHhhhhc--cccchhhHHhHhhhcc----CCC--chhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcC---CC
Q 002870 409 HGKMSAAASLGMIL--LWDVDSGLAQIDKYFH----STD--NHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG---RE 477 (872)
Q Consensus 409 ~~k~~A~aslGlI~--~~~~~~~l~~l~~yL~----s~~--~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~---~~ 477 (872)
+....+...+|.++ .|+.+++...+.+-+. ... ......+...+|.++.... +.+.+...+...+. ..
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcc
Confidence 34444555566655 5788888776665543 111 1334455566776654332 23446666665543 11
Q ss_pred CHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHh---cCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccc
Q 002870 478 DACIRIGAIMGLGISYAGTQND-QIRHKLSTIL---NDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESE 553 (872)
Q Consensus 478 ~~~v~~gA~lGLGLay~Gt~~~-~i~e~L~~~L---~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~ 553 (872)
.......+...+|.++...++. +..+.+...+ ........+.....++.+.++...|+.+.+...+..........
T Consensus 169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 248 (373)
T 1hz4_A 169 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 248 (373)
T ss_dssp CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc
Confidence 1111335666788888777664 3334443333 22211222222233456666777788776666665432211110
Q ss_pred cCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhh----hhhhhhhHHHHHHhhhcCCCHHHHHHHHHhh
Q 002870 554 LGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNE----KIRKYCDMTLLSCAYAGTGNVLKVQNLLGHC 620 (872)
Q Consensus 554 l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~----~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~ 620 (872)
.+........++-.++..|+.+++...++....... +....-....++.+|...|+.......+.-+
T Consensus 249 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 000011123445556667777777776665443321 1111123445677777777766555554443
No 142
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=45.68 E-value=1.8e+02 Score=26.57 Aligned_cols=15 Identities=7% Similarity=-0.066 Sum_probs=7.7
Q ss_pred HHHHhHhcCCCCHHH
Q 002870 524 ISLGLIYVGSCNEEV 538 (872)
Q Consensus 524 LALGLi~lGs~n~~~ 538 (872)
+-||.++.-.|+-+-
T Consensus 9 ~~lG~~~~~~g~~~~ 23 (184)
T 3vtx_A 9 MDIGDKKRTKGDFDG 23 (184)
T ss_dssp HHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCHHH
Confidence 345555555555433
No 143
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=45.56 E-value=80 Score=31.78 Aligned_cols=97 Identities=7% Similarity=-0.083 Sum_probs=61.4
Q ss_pred hhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchH-HHHHHHHhhcCCchHHHHHHHHHHHHHcCC
Q 002870 638 IAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVN-VMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716 (872)
Q Consensus 638 iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~-aid~L~~l~~D~d~~Vr~~AiiAlGlV~aG 716 (872)
++-++...| +.....+...+++.|+.+||.+..++ +.+...++.+ ++.++..+.+|++.+|+.+.-=+|.-++.-
T Consensus 114 ~~~~~~~~~---~~~~~~i~~W~~s~~~w~rR~ai~~~-l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 114 FGSWVALHL---TELPTIFALFYGAENFWNRRVALNLQ-LMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHHHHSG---GGHHHHHHHHTTCSSHHHHHHHHHTT-TTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCh---HHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 333334455 55667778889999999999988855 4555444443 455677789999999998765666655443
Q ss_pred CCchHHHHHHHHhhhhhccChhhHHHHHHH
Q 002870 717 TNNARIAGMLRNLSSYYYKDANLLFCVRIA 746 (872)
Q Consensus 717 t~n~rv~~~lr~l~s~~~~d~~~~f~~~lA 746 (872)
. -..+..++ . .+.+.++..+-|
T Consensus 190 ~-~~~v~~fl-~------~~~l~~~~~r~A 211 (220)
T 2b6c_A 190 N-PQWVEELM-K------ELVLSPLAQREG 211 (220)
T ss_dssp C-HHHHHHHH-H------HSCCCHHHHHHH
T ss_pred C-HHHHHHHH-h------hccCCHHHHHHH
Confidence 2 22455666 1 233445555554
No 144
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=45.54 E-value=1.8e+02 Score=26.55 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=11.6
Q ss_pred hHhHhhhhhhcchhhHhHHHHHHHHHhh
Q 002870 634 AVLGIAMVAMAEELGLEMAIRSLEHLLQ 661 (872)
Q Consensus 634 Avl~iglI~~~~~~g~e~~~~il~~L~~ 661 (872)
.-+|..+...|+. +.+.+.+..-++
T Consensus 145 ~~lg~~~~~~g~~---~~A~~~~~~al~ 169 (184)
T 3vtx_A 145 QSIGLAYEGKGLR---DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHTTCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCH---HHHHHHHHHHHh
Confidence 3344444444444 455555554443
No 145
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=45.19 E-value=68 Score=32.86 Aligned_cols=69 Identities=14% Similarity=0.073 Sum_probs=45.5
Q ss_pred HHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhH------hHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc
Q 002870 613 VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGL------EMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK 684 (872)
Q Consensus 613 i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~------e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~ 684 (872)
|..|.+.+.++ + +++|..|+-+|.-++.+++... .-++.++..|.+++++.++..++-||--++....+
T Consensus 54 Ip~LV~lL~s~-~--~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~ 128 (233)
T 3tt9_A 54 ILKLLQLLKVQ-N--EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL 128 (233)
T ss_dssp HHHHHHGGGCC-C--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG
T ss_pred HHHHHHHHcCC-C--HHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh
Confidence 56677777653 2 2789999999999998754211 13455566665567889999888666655444433
No 146
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=43.61 E-value=1.5e+02 Score=30.86 Aligned_cols=105 Identities=14% Similarity=0.101 Sum_probs=58.7
Q ss_pred HHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhc-------cCCC
Q 002870 611 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLC-------ISNP 683 (872)
Q Consensus 611 ~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~-------agt~ 683 (872)
+.++.+|.+..+ .+ ..+|+..+==|+-++...+.-...+...+..|+++.+|.|.+.+..+.+-+| +.++
T Consensus 53 ~~l~~il~~~~~-~~--~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~ 129 (257)
T 3gs3_A 53 EFLESVLSLAHD-SN--MEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLM 129 (257)
T ss_dssp HHHHHHHGGGGC-SC--HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhccC-Ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344566665433 22 1566665555555555555222334444556678888999888888877665 2344
Q ss_pred c-----hHHHHHHHHh-------hcCCchHHHHHHH-HHHHHHcCCCC
Q 002870 684 K-----VNVMDTLSRL-------SHDTDSEVAMAAV-ISLGLIGSGTN 718 (872)
Q Consensus 684 ~-----~~aid~L~~l-------~~D~d~~Vr~~Ai-iAlGlV~aGt~ 718 (872)
+ .+..+.+..+ ....+..||.+|+ |....|.++|.
T Consensus 130 ~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~ 177 (257)
T 3gs3_A 130 EPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSF 177 (257)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcC
Confidence 3 2344443332 1223455777666 66666666654
No 147
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=43.14 E-value=1.6e+02 Score=25.32 Aligned_cols=137 Identities=15% Similarity=-0.001 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhccCCCH-HHHHHHHHHhc--CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCc
Q 002870 480 CIRIGAIMGLGISYAGTQND-QIRHKLSTILN--DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGE 556 (872)
Q Consensus 480 ~v~~gA~lGLGLay~Gt~~~-~i~e~L~~~L~--d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e 556 (872)
..+.-+...+|.+|...++. +..+.+...+. ...........+-..+|.++.-.++.+.+...+.......+. ..+
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~ 84 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-LKD 84 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCC
Confidence 34445666677777666653 33333333331 000111222346666777777777765444444332221100 011
Q ss_pred hh---HhHHHHHHHhhhcCChhhHHHHHHHHh----hhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHH
Q 002870 557 PL---TRLIPLGLGLLYLGKQESVEATAEVSK----TFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLL 617 (872)
Q Consensus 557 ~~---~r~~~lglgLl~~G~~e~a~~ll~~L~----~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL 617 (872)
+. .-...+|..+...|+-+++...++... ...++.........++..|...|+.....+.+
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 11 112234555556666666655444322 22333333344455666666777655444333
No 148
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=43.00 E-value=2.5e+02 Score=27.46 Aligned_cols=82 Identities=9% Similarity=-0.076 Sum_probs=39.6
Q ss_pred HHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHh--HHHHHHHhhhcCChhhHHHHHHHHhhh-hhhhhhhhhHH
Q 002870 522 SAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTR--LIPLGLGLLYLGKQESVEATAEVSKTF-NEKIRKYCDMT 598 (872)
Q Consensus 522 AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r--~~~lglgLl~~G~~e~a~~ll~~L~~~-~~~i~r~~~~~ 598 (872)
+-+.+|..++..++-+-+...++.+....+. .+... ...+|..+...|+-+++...++.+... ++.-...-+.+
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRT---HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4566677777777665555555554433221 12211 223444445555555555555554432 21111223345
Q ss_pred HHHHhhhc
Q 002870 599 LLSCAYAG 606 (872)
Q Consensus 599 ~~~lAyaG 606 (872)
.+|.+|..
T Consensus 94 ~lg~~~~~ 101 (261)
T 3qky_A 94 ERAMCYYK 101 (261)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666666
No 149
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=42.91 E-value=2.3e+02 Score=29.49 Aligned_cols=128 Identities=13% Similarity=0.078 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhcccCCC-CccchhhhHhHhhhhhhcchhhHhHH---HHHHHHHhhcCChhHHhHHHHHHhhhccCCCch
Q 002870 610 VLKVQNLLGHCAQHHEK-GEAYQGPAVLGIAMVAMAEELGLEMA---IRSLEHLLQYGEQNIRRAVPLALGLLCISNPKV 685 (872)
Q Consensus 610 ~~~i~~LL~~~~~~~~d-~~~vrr~Avl~iglI~~~~~~g~e~~---~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~ 685 (872)
...++++|.-...-..+ ++.+.--|.=+++.+.-+.|.+.+.- ...+..+..++++.++-=++=.+|.+..-++.+
T Consensus 70 ~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~ 149 (265)
T 3b2a_A 70 MMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK 149 (265)
T ss_dssp HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH
Confidence 34455555544322111 11333345556777777777654443 344455567889999999999999999999999
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHH-HHHHHHhhhhh-ccCh
Q 002870 686 NVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARI-AGMLRNLSSYY-YKDA 737 (872)
Q Consensus 686 ~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv-~~~lr~l~s~~-~~d~ 737 (872)
++++.|..+.+-.|..|+..|+-++--+..-++++.+ ..+++.+.... ++||
T Consensus 150 ~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~ 203 (265)
T 3b2a_A 150 LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNE 203 (265)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCH
Confidence 9999999999888999998888888777777766542 23334433332 3565
No 150
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=40.87 E-value=2.6e+02 Score=27.03 Aligned_cols=231 Identities=8% Similarity=-0.021 Sum_probs=110.3
Q ss_pred HHHHHHHhccCCC-HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchh-H-hH
Q 002870 486 IMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPL-T-RL 561 (872)
Q Consensus 486 ~lGLGLay~Gt~~-~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~-~-r~ 561 (872)
.+..|..+...++ ++..+.+...+. ++. ..+ +-+.+|.++.-.++.+.+...+....+.. . +..+ . ..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~--~~~~~~~~~ 77 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPY----IYNRRAVCYYELAKYDLAQKDIETYFSKV-N--ATKAKSADF 77 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CST----THHHHHHHHHHTTCHHHHHHHHHHHHTTS-C--TTTCCHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcc-C--chhHHHHHH
Confidence 3445555555554 345555555553 332 122 34556667777777655555555444321 1 1112 1 13
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhh-h
Q 002870 562 IPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIA-M 640 (872)
Q Consensus 562 ~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~ig-l 640 (872)
..+|..+...|+-+++...++........ .......+|..|...|+.....+.+.-+.....+ +.. +...+| .
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~--~~~~l~~~ 151 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTT--RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT--DPK--VFYELGQA 151 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC--CHH--HHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC--cHH--HHHHHHHH
Confidence 44555666667777666666554443211 1123456778888899876666666555443221 222 333344 2
Q ss_pred hhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCC--chHHHHHHHHh----hcCCch--HHHHHHHHHHHH
Q 002870 641 VAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNP--KVNVMDTLSRL----SHDTDS--EVAMAAVISLGL 712 (872)
Q Consensus 641 I~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~--~~~aid~L~~l----~~D~d~--~Vr~~AiiAlGl 712 (872)
+..... .+.+.+.+....+....+...-..++......|.. ..+++..+.+. ...++. .....+...+|.
T Consensus 152 ~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 229 (272)
T 3u4t_A 152 YYYNKE--YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY 229 (272)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 222222 27777777776655432222222222222222321 22244444333 222332 222345666777
Q ss_pred HcCCCCc-hHHHHHHHHhhhh
Q 002870 713 IGSGTNN-ARIAGMLRNLSSY 732 (872)
Q Consensus 713 V~aGt~n-~rv~~~lr~l~s~ 732 (872)
+....++ .+....+++....
T Consensus 230 ~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 230 YYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc
Confidence 7766665 3444555554443
No 151
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=40.63 E-value=93 Score=34.80 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=78.9
Q ss_pred chhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHH------------HHHHhh--hccCCC--chHHHHHHHH
Q 002870 630 YQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAV------------PLALGL--LCISNP--KVNVMDTLSR 693 (872)
Q Consensus 630 vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga------------~lALGL--~~agt~--~~~aid~L~~ 693 (872)
.-+.|...+||.++++++....-.+++.+|-+..++..+... -+++|+ +|+..+ ...++..|..
T Consensus 84 ~G~lAl~iLAL~a~C~d~p~~~g~~Lv~~L~~~~~~e~~~~~~~~~~~p~tn~Yq~sL~vLALC~~g~~v~~~~v~~Ll~ 163 (414)
T 2bb6_A 84 MGQLALYLLALRANCEFIGGRKGDRLVSQLKRFLEDEKRAIGHNHQGHPRTSYYQYSLGILALCVHQKRVHDSVVGKLLY 163 (414)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHCSSSSCCCSSCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcccchhHHHHHHHHHHHHHhhccccCCCCcccchHHHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 346788899997777762223555666666322222222111 222222 233322 3445555544
Q ss_pred h-hcC-----CchHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhhhhh--ccChhh----HHHHHHH-HhhhhcCC
Q 002870 694 L-SHD-----TDSEVAMAAVISLGLIGSGTNN------ARIAGMLRNLSSYY--YKDANL----LFCVRIA-QGLVHMGK 754 (872)
Q Consensus 694 l-~~D-----~d~~Vr~~AiiAlGlV~aGt~n------~rv~~~lr~l~s~~--~~d~~~----~f~~~lA-qGll~~G~ 754 (872)
. .+| ...+|-..|+..|++..++..+ ++|.+.++.+.++. .+.++. .+-+.+| |+|.-+|.
T Consensus 164 ~~~~~~~~~g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FGN~~ST~lA~QAL~~~~~ 243 (414)
T 2bb6_A 164 AVEHKPHLLQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKAQTPEGYFGNVYSTPLALQLLMGSLR 243 (414)
T ss_dssp HHHSSSCSCCTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTBCTTSCBSSTTTHHHHHHHHTTCSS
T ss_pred HhhccCcCCCCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhcCC
Confidence 3 333 2345777887777777777532 45666665554432 123322 2223333 66666663
Q ss_pred C------ce------eecccCCCCCCCChHHHHHHHHHHH
Q 002870 755 G------LL------TLNPYHSDRFLLSPTALAGIVTTLF 782 (872)
Q Consensus 755 g------~~------tlsp~~sd~~~~~~~a~agLl~~l~ 782 (872)
- ++ -++ ..+|..|-++.+.+-++..|.
T Consensus 244 ~~~~~~w~~~~a~~~Ll~-q~~dG~F~np~ataQ~lpaL~ 282 (414)
T 2bb6_A 244 PSVELGTACLKAKAALQA-SLQHKTFQNPLMISQLLPVLN 282 (414)
T ss_dssp CCHHHHHHHHHHHHHHHH-HHTTTCCCSHHHHHHHHHHTT
T ss_pred CcccccchHHHHHHHHHH-hccCCCCCChHHHHHHHHHhc
Confidence 1 11 134 567777777777776666654
No 152
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=39.55 E-value=2.6e+02 Score=26.86 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=12.3
Q ss_pred HHHHHHhHhcCCCCHHHHHHHHHH
Q 002870 522 SAISLGLIYVGSCNEEVAQAIIFA 545 (872)
Q Consensus 522 AaLALGLi~lGs~n~~~~e~ll~~ 545 (872)
+-+.+|.++...++-+.+-..++.
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~ 66 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDR 66 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 455566666666655433333333
No 153
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=39.11 E-value=2.7e+02 Score=26.76 Aligned_cols=61 Identities=5% Similarity=0.001 Sum_probs=36.0
Q ss_pred HHHhhhccCCCch-HHHHHHHHhh-cCCchHHHHHHHHHHHHHcCCCCch-HHHHHHHHhhhhh
Q 002870 673 LALGLLCISNPKV-NVMDTLSRLS-HDTDSEVAMAAVISLGLIGSGTNNA-RIAGMLRNLSSYY 733 (872)
Q Consensus 673 lALGL~~agt~~~-~aid~L~~l~-~D~d~~Vr~~AiiAlGlV~aGt~n~-rv~~~lr~l~s~~ 733 (872)
+.+|..+...++. +++..+.++. .+|++....-|...+|.+....++. ...+.++.+...+
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 4455555444443 5667777665 4566554556777777777776653 4456666665543
No 154
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=38.98 E-value=1.4e+02 Score=27.59 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=67.8
Q ss_pred hccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCC-CHHHHHHHHHH-HHHHhccCCC
Q 002870 421 ILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRE-DACIRIGAIMG-LGISYAGTQN 498 (872)
Q Consensus 421 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~-~~~v~~gA~lG-LGLay~Gt~~ 498 (872)
+..|+.+++...+.+-+..... ...+.+.+|.++.... +.+.+...+...+... ++. ....++ +.+.-.+ ..
T Consensus 17 ~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~--~~~~~~~~~~~~~~-~~ 90 (176)
T 2r5s_A 17 LQQGEHAQALNVIQTLSDELQS--RGDVKLAKADCLLETK-QFELAQELLATIPLEYQDNS--YKSLIAKLELHQQA-AE 90 (176)
T ss_dssp HHTTCHHHHHHHHHTSCHHHHT--SHHHHHHHHHHHHHTT-CHHHHHHHHTTCCGGGCCHH--HHHHHHHHHHHHHH-TS
T ss_pred HHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHCC-CHHHHHHHHHHhhhccCChH--HHHHHHHHHHHhhc-cc
Confidence 4457788888777766542212 2345555665554332 2344777776655432 221 111111 1111111 11
Q ss_pred HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhH
Q 002870 499 DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESV 577 (872)
Q Consensus 499 ~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a 577 (872)
.+..+.+...+. ++. +. .+-+.+|.++...|+.+.+...+...+...+.. .+.. -...+|..+...|+.+.+
T Consensus 91 ~~a~~~~~~al~~~P~-~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~-a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 91 SPELKRLEQELAANPD-NF----ELACELAVQYNQVGRDEEALELLWNILKVNLGA-QDGE-VKKTFMDILSALGQGNAI 163 (176)
T ss_dssp CHHHHHHHHHHHHSTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT-TTTH-HHHHHHHHHHHHCSSCHH
T ss_pred chHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-ChHH-HHHHHHHHHHHhCCCCcH
Confidence 123444555543 332 22 256677777777777666555555444332221 1111 122344445556666544
Q ss_pred HH
Q 002870 578 EA 579 (872)
Q Consensus 578 ~~ 579 (872)
..
T Consensus 164 ~~ 165 (176)
T 2r5s_A 164 AS 165 (176)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 155
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=38.87 E-value=3.3e+02 Score=27.65 Aligned_cols=101 Identities=11% Similarity=0.036 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhcCChhHHhH-HHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHc--CCCC--chH--HH
Q 002870 651 MAIRSLEHLLQYGEQNIRRA-VPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIG--SGTN--NAR--IA 723 (872)
Q Consensus 651 ~~~~il~~L~~~~~~~VR~g-a~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~--aGt~--n~r--v~ 723 (872)
.++.+++..+.+..+.+|.. .-..+.++...++...+++.+.+.....++-|+..++..+.-+. .|+. +++ +.
T Consensus 103 ~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~ 182 (278)
T 4ffb_C 103 WTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLP 182 (278)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHH
Confidence 34555555445556777654 34445555666777788888888888888888888776665443 2433 332 22
Q ss_pred HHHHHhhhhh-ccChhhHHHHHHHHhhhh
Q 002870 724 GMLRNLSSYY-YKDANLLFCVRIAQGLVH 751 (872)
Q Consensus 724 ~~lr~l~s~~-~~d~~~~f~~~lAqGll~ 751 (872)
.++..+.+.. +.|+.+|=++.-..|-++
T Consensus 183 ~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 183 ELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3333333322 467777766666665554
No 156
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=38.72 E-value=1.7e+02 Score=24.22 Aligned_cols=89 Identities=12% Similarity=0.062 Sum_probs=37.9
Q ss_pred HHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHh
Q 002870 524 ISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCA 603 (872)
Q Consensus 524 LALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lA 603 (872)
+.+|.++.-.++.+.+..++.......+. .......+|..+...|+.+++...++......... ......++..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~ 78 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPR----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCc----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc--hHHHHHHHHH
Confidence 44555555555544444444433322111 11122233444445555555555555443321111 1122344555
Q ss_pred hhcCCCHHHHHHHHH
Q 002870 604 YAGTGNVLKVQNLLG 618 (872)
Q Consensus 604 yaGTGn~~~i~~LL~ 618 (872)
|...|+.....+.+.
T Consensus 79 ~~~~~~~~~A~~~~~ 93 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQ 93 (136)
T ss_dssp HHTTTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHH
Confidence 666666554444433
No 157
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=38.50 E-value=3.6e+02 Score=28.07 Aligned_cols=168 Identities=10% Similarity=-0.017 Sum_probs=89.4
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHhhcCC----CCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHhc---CCCCchHHH
Q 002870 448 ALLGVGIVNCGIRNDCDPALALLSEYVGR----EDACIRIGAIMGLGISYAGTQND-QIRHKLSTILN---DAKSPLDVI 519 (872)
Q Consensus 448 AllaLGli~~G~~~e~d~~~~lL~~~L~~----~~~~v~~gA~lGLGLay~Gt~~~-~i~e~L~~~L~---d~~~~~e~~ 519 (872)
..+-.|..+.... +-+.++..+...+.- ++......+...||.+|...++. ...+.+...+. .........
T Consensus 103 ~~~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEFDQK-EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 4445565544332 234477777665542 44566667888899998877764 34444444432 211111223
Q ss_pred HHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhH---HHHHHHhhhcCChhhHHHHHHHHhh----hhhhhh
Q 002870 520 AFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRL---IPLGLGLLYLGKQESVEATAEVSKT----FNEKIR 592 (872)
Q Consensus 520 ~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~---~~lglgLl~~G~~e~a~~ll~~L~~----~~~~i~ 592 (872)
..+-..+|.++...++-+-+...+...++-.+. ..++.... ..+|......|+-+++...++.... ..+|..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMD-IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 356678999999888866554444332221110 11222222 2244444555666666554443322 234444
Q ss_pred hhhhHHHHHHhhhcCCCHHHHHHHHH
Q 002870 593 KYCDMTLLSCAYAGTGNVLKVQNLLG 618 (872)
Q Consensus 593 r~~~~~~~~lAyaGTGn~~~i~~LL~ 618 (872)
......+|..|...|+.......+.
T Consensus 261 -~~~~~~la~~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 261 -PKVLFGLSWTLCKAGQTQKAFQFIE 285 (378)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5556678888888888665544443
No 158
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=36.57 E-value=97 Score=34.49 Aligned_cols=93 Identities=15% Similarity=0.108 Sum_probs=52.3
Q ss_pred HHHHHhhcC-CchHHHHHHHHHHHHHcCCC---Cc------hHHHHHHHHhhhhh--ccChh----hHHHHHHHHhh-hh
Q 002870 689 DTLSRLSHD-TDSEVAMAAVISLGLIGSGT---NN------ARIAGMLRNLSSYY--YKDAN----LLFCVRIAQGL-VH 751 (872)
Q Consensus 689 d~L~~l~~D-~d~~Vr~~AiiAlGlV~aGt---~n------~rv~~~lr~l~s~~--~~d~~----~~f~~~lAqGl-l~ 751 (872)
.++....+| ....|--.|+..|++..++. .+ .++...++++..+. .+.++ ..|-+.+|+=. .-
T Consensus 138 kLl~~~~~~g~~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fGn~yST~LA~QAL~~ 217 (399)
T 2pmv_A 138 RFAKTLLANSSPFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIGDIYSTGLAMQALSV 217 (399)
T ss_dssp HHHHHHHHCCSCCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBSSHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCcccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCcccccccHHHHHHHHHh
Confidence 344555666 34457777777777777776 22 24666666666654 23443 34555555444 44
Q ss_pred cCCC-----ce-----e-ecccCCCCCCCChHHHHHHHHHHH
Q 002870 752 MGKG-----LL-----T-LNPYHSDRFLLSPTALAGIVTTLF 782 (872)
Q Consensus 752 ~G~g-----~~-----t-lsp~~sd~~~~~~~a~agLl~~l~ 782 (872)
+|.. ++ + ++ ..+|..|-++-+.+-++-.|.
T Consensus 218 ~~~~~~~~W~c~~al~~l~~-q~~~G~F~np~~taQilPaL~ 258 (399)
T 2pmv_A 218 TPEPSKKEWNCKKTTDMILN-EIKQGKFHNPMSIAQILPSLK 258 (399)
T ss_dssp CSSCCSSCCCHHHHHHHHHH-HHTTTTTCSHHHHHHHHHHHT
T ss_pred cCCCccccccHHHHHHHHHH-HhhCCCcCCHHHHHHHHHHhc
Confidence 4431 11 0 22 456777777777776666664
No 159
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=35.25 E-value=2.5e+02 Score=25.27 Aligned_cols=13 Identities=8% Similarity=0.028 Sum_probs=6.3
Q ss_pred HHHHHhhhcCCCH
Q 002870 598 TLLSCAYAGTGNV 610 (872)
Q Consensus 598 ~~~~lAyaGTGn~ 610 (872)
+.+|..|...|+-
T Consensus 35 ~~la~~y~~~~~~ 47 (150)
T 4ga2_A 35 FYFAKLYYEAKEY 47 (150)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCH
Confidence 3444555555553
No 160
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=35.07 E-value=5.2e+02 Score=30.68 Aligned_cols=151 Identities=9% Similarity=-0.060 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCC-CCHHHHHHHHHHHHHHhccCCC-HHHHHHHHHHhc-CCCCchHHHH
Q 002870 444 VIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIA 520 (872)
Q Consensus 444 ~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGLay~Gt~~-~~i~e~L~~~L~-d~~~~~e~~~ 520 (872)
-.+-|+..||.++....+ -+.++..+...+.- ++. ..+...||.+|...++ ++..+.+...+. +++ ..
T Consensus 7 ~~a~al~nLG~~~~~~G~-~~eAi~~~~kAl~l~P~~---~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~---- 77 (723)
T 4gyw_A 7 THADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FA---- 77 (723)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH----
T ss_pred CcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH----
Confidence 345677777877764433 34477777666542 221 2467778888877665 355555655554 432 22
Q ss_pred HHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHH
Q 002870 521 FSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLL 600 (872)
Q Consensus 521 ~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~ 600 (872)
-+-..||.++.-.++.+.+...++..++..+. ...-...+|..+...|+-+++...++...+.+... ..+..-+
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~----~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~--~~a~~~L 151 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPA----FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF--PDAYCNL 151 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHhhh
Confidence 25667777777777765544444433332211 12223446666667777776666555544332111 1123345
Q ss_pred HHhhhcCCC
Q 002870 601 SCAYAGTGN 609 (872)
Q Consensus 601 ~lAyaGTGn 609 (872)
|.+|...|+
T Consensus 152 ~~~l~~~g~ 160 (723)
T 4gyw_A 152 AHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTC
T ss_pred hhHHHhccc
Confidence 556666665
No 161
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=34.67 E-value=4.4e+02 Score=27.97 Aligned_cols=130 Identities=12% Similarity=0.012 Sum_probs=68.5
Q ss_pred HHHHHhhhcCCCHHHHHHHHHhh-cccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCC------hhHHhH
Q 002870 598 TLLSCAYAGTGNVLKVQNLLGHC-AQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGE------QNIRRA 670 (872)
Q Consensus 598 ~~~~lAyaGTGn~~~i~~LL~~~-~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~------~~VR~g 670 (872)
..+|.+|.-.|+....-+.++-+ ..+.+. ......+.++--++.++++ +.+.+.+..+.+-.+ -.++.-
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~-~~lea~~l~vqi~L~~~r~---d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAE-GTTELLLLAIEVALLNNNV---STASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCST-THHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCc-CcHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCccccccchHHHHH
Confidence 34555566666665555555544 221100 1444555555556667777 778888877755432 244433
Q ss_pred HHHH-HhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhh
Q 002870 671 VPLA-LGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYY 733 (872)
Q Consensus 671 a~lA-LGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~s~~ 733 (872)
.+-| +++.--|....+++..+..++....+.-....+++ ..+..| +-+...+.|+++.+.+
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g-~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQR-NIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHT-CHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcC-CHHHHHHHHHHHHHhc
Confidence 3322 23333445677889899888776543222223333 222222 2255667777766544
No 162
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=32.29 E-value=1.7e+02 Score=32.34 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=60.5
Q ss_pred HHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhc-------cCCCc-
Q 002870 613 VQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLC-------ISNPK- 684 (872)
Q Consensus 613 i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~-------agt~~- 684 (872)
..+|+.+..+. + ..+|+..+==|+-++..+..-...+...+..|+++.++.|.+.++.|.+-+| +.+++
T Consensus 65 l~~il~f~~d~-~--~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~ 141 (386)
T 3o2t_A 65 LDEIIAFQADK-S--IEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVI 141 (386)
T ss_dssp HHHHHGGGGCS-C--HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHhccCC-c--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34555555432 1 1466655555555555554112334445566778888999888888887776 23333
Q ss_pred ----hHHHHHHHHh-------hcCCchHHHHHHH-HHHHHHcCCCC
Q 002870 685 ----VNVMDTLSRL-------SHDTDSEVAMAAV-ISLGLIGSGTN 718 (872)
Q Consensus 685 ----~~aid~L~~l-------~~D~d~~Vr~~Ai-iAlGlV~aGt~ 718 (872)
.++.+.+..+ ....+.-||..|+ |....|.++|.
T Consensus 142 ~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~ 187 (386)
T 3o2t_A 142 SELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSP 187 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSC
T ss_pred chhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCC
Confidence 2444444333 2234567898888 88888887774
No 163
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=30.93 E-value=3.4e+02 Score=25.55 Aligned_cols=79 Identities=8% Similarity=0.024 Sum_probs=36.4
Q ss_pred hhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc-hHHHHHHHHhh-cCCchHHHHHHHHHH
Q 002870 633 PAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK-VNVMDTLSRLS-HDTDSEVAMAAVISL 710 (872)
Q Consensus 633 ~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~-~~aid~L~~l~-~D~d~~Vr~~AiiAl 710 (872)
...+|..+...++. +.+...+............ +-..+|.++...++ .+++..+.+.. .+|+.. .+...+
T Consensus 142 ~~~~~~~~~~~~~~---~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~l 213 (258)
T 3uq3_A 142 ARLEGKEYFTKSDW---PNAVKAYTEMIKRAPEDAR--GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV---RAYIRK 213 (258)
T ss_dssp HHHHHHHHHHTTCH---HHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHH
T ss_pred HHHHHHHHHHhcCH---HHHHHHHHHHHhcCcccHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHH---HHHHHH
Confidence 34444455555554 6666666666544322221 22233333333333 45566665553 344331 234455
Q ss_pred HHHcCCCCc
Q 002870 711 GLIGSGTNN 719 (872)
Q Consensus 711 GlV~aGt~n 719 (872)
|.+....++
T Consensus 214 ~~~~~~~g~ 222 (258)
T 3uq3_A 214 ATAQIAVKE 222 (258)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhh
Confidence 555554444
No 164
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=30.49 E-value=1.8e+02 Score=37.89 Aligned_cols=132 Identities=19% Similarity=0.228 Sum_probs=75.8
Q ss_pred hHHHHHHHHhcCCCcchHHHHHHHHHHHhhhccCcccccchhhhhcC-CCCCCC------CcccHHH--HHHHHHHHHHH
Q 002870 94 HYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLG-SEGDIG------SWGHEYV--RNLAGEIAQEY 164 (872)
Q Consensus 94 ~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~-~~~d~~------~wgheYv--r~L~~ei~~~y 164 (872)
|+|.++.+.+.... ++.+..-+-+--++ -.++..++|+=.+.. ..||-- + .||=+ |.|++.|-..
T Consensus 1444 ~l~lik~yl~~vq~-~n~~~Vneal~el~---ieeed~~~Lr~si~~~~nfd~~~La~~le-kheLl~frrIAa~ly~~- 1517 (1630)
T 1xi4_A 1444 QLPLVKPYLRSVQN-HNNKSVNESLNNLF---ITEEDYQALRTSIDAYDNFDNISLAQRLE-KHELIEFRRIAAYLFKG- 1517 (1630)
T ss_pred ChHHhHHHHHHHHH-hcchhhhHHHHHHh---cCccchHHHHHHHhhccCcCHHHHHHHhh-hhhHHHHHHHHHHHHHh-
Confidence 34444444443321 23333344444442 234445667666665 345533 3 37777 7777766433
Q ss_pred HHhccCccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCChhhhHHH----hhccchHHHHHHHHhhcccCCCCChHH
Q 002870 165 AKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEH----VDATNFKRTCLYLTSAAKYLPGPDDML 240 (872)
Q Consensus 165 ~~~~~~~~~~~~L~~lv~~iv~~~l~~n~e~eAvdlalE~~~ld~i~~~----vd~~~~~rv~~Yl~~~~~~~~~p~~~~ 240 (872)
++. -.+-+..|.+++.+.+||+.|.+.++-+++++. ++..+...-+.-|..|-.+ +.|+ .
T Consensus 1518 ----n~~---------~~~ai~l~k~d~l~~dAm~~a~~S~d~e~~e~ll~~F~~~~~~E~f~a~Ly~cy~l-~~pd--~ 1581 (1630)
T 1xi4_A 1518 ----NNR---------WKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDL-LRPD--V 1581 (1630)
T ss_pred ----cCc---------HHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc-CCch--H
Confidence 110 014467788999999999999999999998664 4444554444444556554 4665 4
Q ss_pred HHHHHHH
Q 002870 241 VLDIAYM 247 (872)
Q Consensus 241 vl~~~~~ 247 (872)
||+++..
T Consensus 1582 vle~aw~ 1588 (1630)
T 1xi4_A 1582 VLETAWR 1588 (1630)
T ss_pred HHHHHHH
Confidence 6776643
No 165
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=29.96 E-value=3.3e+02 Score=25.05 Aligned_cols=86 Identities=10% Similarity=-0.035 Sum_probs=44.2
Q ss_pred HHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHH
Q 002870 521 FSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLL 600 (872)
Q Consensus 521 ~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~ 600 (872)
-+-+.+|.++...++-+-+...++.+....+. + ..-...+|..+...|+-+++-..++.....+.. .....+-+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~---~-~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--~~~~~~~l 110 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY---N-VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN--DYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--CCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C-HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--CcHHHHHH
Confidence 35677777777777766555555554433221 1 222334555566666666555544443332111 11233445
Q ss_pred HHhhhcCCCHHH
Q 002870 601 SCAYAGTGNVLK 612 (872)
Q Consensus 601 ~lAyaGTGn~~~ 612 (872)
|.+|...|+...
T Consensus 111 g~~~~~lg~~~e 122 (151)
T 3gyz_A 111 GQCQLRLKAPLK 122 (151)
T ss_dssp HHHHHHTTCHHH
T ss_pred HHHHHHcCCHHH
Confidence 666666666543
No 166
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=29.53 E-value=2.6e+02 Score=28.21 Aligned_cols=118 Identities=16% Similarity=0.105 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhhccccchhhHHhHhhhcc---CCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHH
Q 002870 410 GKMSAAASLGMILLWDVDSGLAQIDKYFH---STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAI 486 (872)
Q Consensus 410 ~k~~A~aslGlI~~~~~~~~l~~l~~yL~---s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~ 486 (872)
.|...+.+||=|..-|+.-.-....+.++ +.+..-|..||--+|.++-++....-|-+.-|...|.+.++++|.+|.
T Consensus 123 ikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaV 202 (253)
T 2db0_A 123 TKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAV 202 (253)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHH
T ss_pred ceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHH
Q ss_pred HHHHHHhccCCCHHHHHHHHHHhc---CCCCchHHHHHHHHHHHhHhc
Q 002870 487 MGLGISYAGTQNDQIRHKLSTILN---DAKSPLDVIAFSAISLGLIYV 531 (872)
Q Consensus 487 lGLGLay~Gt~~~~i~e~L~~~L~---d~~~~~e~~~~AaLALGLi~l 531 (872)
-.|+- ..+-|+.+...+...+. |+ +..+...---|||.+.+
T Consensus 203 EtL~~--lA~~npklRkii~~kl~e~~D~--S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 203 EALVH--LATLNDKLRKVVIKRLEELNDT--SSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHH--HHTSCHHHHHHHHHHHHHCCCS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHcCHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHH
No 167
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=29.44 E-value=2.7e+02 Score=31.22 Aligned_cols=148 Identities=15% Similarity=-0.017 Sum_probs=64.3
Q ss_pred ccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH-HHH
Q 002870 424 WDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-QIR 502 (872)
Q Consensus 424 ~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~-~i~ 502 (872)
|+.++|+..+.+.+...... ..+...+|.++.... +-+.+...+...+...... ..+...+|.+|...++. +..
T Consensus 3 g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQD--FVAWLMLADAELGMG-DTTAGEMAVQRGLALHPGH--PEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ------------------CC--HHHHHHHHHHHHHHT-CHHHHHHHHHHHHTTSTTC--HHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHH
Confidence 45555555555544322222 234555555544222 2234677777666532211 23556677777666653 455
Q ss_pred HHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhc---CChhhHH
Q 002870 503 HKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYL---GKQESVE 578 (872)
Q Consensus 503 e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~---G~~e~a~ 578 (872)
+.+...+. ++. .. .+-+.+|.++...++.+.+...++...+..+. . ..-...+|..+... |+-+++.
T Consensus 78 ~~~~~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~-~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 78 VLLQQASDAAPE-HP----GIALWLGHALEDAGQAEAAAAAYTRAHQLLPE---E-PYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C-HHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHhcCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C-HHHHHHHHHHHHHhhccccHHHHH
Confidence 55555553 332 22 25567777777777765555544443332221 1 12223345555556 6666655
Q ss_pred HHHHHHh
Q 002870 579 ATAEVSK 585 (872)
Q Consensus 579 ~ll~~L~ 585 (872)
..++...
T Consensus 149 ~~~~~al 155 (568)
T 2vsy_A 149 AQVRAAV 155 (568)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554433
No 168
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=28.95 E-value=2.4e+02 Score=31.22 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCChh-hh-HHH-hhccch-HHHH-HHHHhhcccCCCCChHHHHHHHHHH
Q 002870 182 QEIVAFHMKHNAEPEAVDLLMEVEDLD-LL-VEH-VDATNF-KRTC-LYLTSAAKYLPGPDDMLVLDIAYMI 248 (872)
Q Consensus 182 ~~iv~~~l~~n~e~eAvdlalE~~~ld-~i-~~~-vd~~~~-~rv~-~Yl~~~~~~~~~p~~~~vl~~~~~i 248 (872)
+..+...+=-|++..||+++|+.+|+- -| ... -+..-+ .++. .|+...... ..++++++.+
T Consensus 147 d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~gg~el~~~~vq~~Y~~k~~~~------~~~~rll~~i 212 (399)
T 2pm7_A 147 EQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALDSNNERLKESVKNAYFAKYGSK------SSLSRILYSI 212 (399)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTS------CHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHhcCHHHHHHHHHHHHHHhcccC------chHHHHHHHH
Confidence 445556666799999999999999975 11 111 122345 5555 366544421 1355666555
No 169
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=28.57 E-value=4e+02 Score=25.52 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=52.6
Q ss_pred hHHHHHHhhcCC--CCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHH
Q 002870 465 PALALLSEYVGR--EDACIRIGAIMGLGISYAGTQND-QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQ 540 (872)
Q Consensus 465 ~~~~lL~~~L~~--~~~~v~~gA~lGLGLay~Gt~~~-~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e 540 (872)
.++..+...+.. .+......+...+|.+|...++. +..+.+...+. ++. ..+ +-..+|.++.-.++.+.+.
T Consensus 23 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~----~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 23 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPE----VFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHH----HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHH----HHHHHHHHHHHccCHHHHH
Confidence 466666665553 22344555666777777666553 34455555553 332 222 4455666666666654444
Q ss_pred HHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHH
Q 002870 541 AIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVS 584 (872)
Q Consensus 541 ~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L 584 (872)
..+.......+. ...-...+|..+...|+-+++...++..
T Consensus 98 ~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 98 EAFDSVLELDPT----YNYAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp HHHHHHHHHCTT----CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCcc----ccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444433322111 1112223344444455555554444443
No 170
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=27.64 E-value=3.5e+02 Score=24.59 Aligned_cols=157 Identities=11% Similarity=-0.046 Sum_probs=79.3
Q ss_pred ccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcC----CCCHHHHHHHHHHHHHHhccCC
Q 002870 422 LLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACIRIGAIMGLGISYAGTQ 497 (872)
Q Consensus 422 ~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v~~gA~lGLGLay~Gt~ 497 (872)
..|+.+++...+..+. .++...+-++..+|.++....+ -+.+...+...+. .........+...+|.+|...+
T Consensus 4 ~~g~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALL--AHPATASGARFMLGYVYAFMDR-FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHH--TSTTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4566677766322222 2334566777777777664432 3446666655543 2345556667888888888777
Q ss_pred CH-HHHHHHHHHhc---CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhH---HHHHHHhhh
Q 002870 498 ND-QIRHKLSTILN---DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRL---IPLGLGLLY 570 (872)
Q Consensus 498 ~~-~i~e~L~~~L~---d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~---~~lglgLl~ 570 (872)
+. +..+.+...+. ...........+-..+|.++.-.++.+.+...++..+...+. ..++.... ..+|.....
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ-ADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHH
Confidence 64 33344443332 111112223356777888888777765544444332221111 12222222 234444555
Q ss_pred cCChhhHHHHHH
Q 002870 571 LGKQESVEATAE 582 (872)
Q Consensus 571 ~G~~e~a~~ll~ 582 (872)
.|+.+++...++
T Consensus 160 ~g~~~~A~~~~~ 171 (203)
T 3gw4_A 160 EKNLLEAQQHWL 171 (203)
T ss_dssp TTCHHHHHHHHH
T ss_pred CcCHHHHHHHHH
Confidence 666666655443
No 171
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=26.89 E-value=4e+02 Score=25.04 Aligned_cols=225 Identities=13% Similarity=0.046 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHhc---CCCCchHHHH
Q 002870 445 IAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQND-QIRHKLSTILN---DAKSPLDVIA 520 (872)
Q Consensus 445 k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~-~i~e~L~~~L~---d~~~~~e~~~ 520 (872)
.+-++..+|.++.... +-+.++..+...+... -...+...+|.+|...++. +..+.+...+. +.........
T Consensus 4 ~a~~~~~~g~~~~~~~-~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 4 MADKEKAEGNKFYKAR-QFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 4455666776665433 2344777666655432 1135677777777776653 34444444442 1111222224
Q ss_pred HHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHH
Q 002870 521 FSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLL 600 (872)
Q Consensus 521 ~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~ 600 (872)
.+-+.+|.++...++.+-+...++......+. +-.+...|+-+++...++........ .......+
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 145 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------------ADILTKLRNAEKELKKAEAEAYVNPE--KAEEARLE 145 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch------------hHHHHHHhHHHHHHHHHHHHHHcCcc--hHHHHHHH
Confidence 67778888888888766555555444332111 11123334444444444443332211 12234567
Q ss_pred HHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhcc
Q 002870 601 SCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCI 680 (872)
Q Consensus 601 ~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~a 680 (872)
|..|...|+.......+.-+.....+ +.....-+|..+...++. +.+.+.+...++....+... -+.+|.++.
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~~~~~--~~~l~~~~~ 218 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSF---PEAIADCNKAIEKDPNFVRA--YIRKATAQI 218 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCTTCHHH--HHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHhCHHHHHH--HHHHHHHHH
Confidence 77888889865544444443332221 334444556666666665 77777777766543322222 233444443
Q ss_pred CCCc-hHHHHHHHHh
Q 002870 681 SNPK-VNVMDTLSRL 694 (872)
Q Consensus 681 gt~~-~~aid~L~~l 694 (872)
..++ .++++.+.+.
T Consensus 219 ~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 219 AVKEYASALETLDAA 233 (258)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 3343 3455555544
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=25.72 E-value=2.4e+02 Score=24.39 Aligned_cols=21 Identities=19% Similarity=0.014 Sum_probs=10.3
Q ss_pred HHHHHhhhcCChhhHHHHHHH
Q 002870 563 PLGLGLLYLGKQESVEATAEV 583 (872)
Q Consensus 563 ~lglgLl~~G~~e~a~~ll~~ 583 (872)
.+|..+...|+.+++...++.
T Consensus 56 ~lg~~~~~~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 56 SLGLTQAENEKDGLAIIALNH 76 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 344445555555554444443
No 173
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=25.48 E-value=4.4e+02 Score=25.03 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=11.7
Q ss_pred HHHHHHHhHhcCCCCHHHHHHHHH
Q 002870 521 FSAISLGLIYVGSCNEEVAQAIIF 544 (872)
Q Consensus 521 ~AaLALGLi~lGs~n~~~~e~ll~ 544 (872)
.+-..+|.++.-.++.+-+...+.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~ 109 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCK 109 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHH
Confidence 445555555555555444333333
No 174
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=24.91 E-value=3.5e+02 Score=23.68 Aligned_cols=93 Identities=13% Similarity=-0.038 Sum_probs=47.1
Q ss_pred HHHHHHHHHhccCCCH-HHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhH
Q 002870 484 GAIMGLGISYAGTQND-QIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRL 561 (872)
Q Consensus 484 gA~lGLGLay~Gt~~~-~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~ 561 (872)
.+.+.+|.++...++- +..+.+...+. ++. +.+ +-+.+|.++...++.+.+...+...+...+. + ..-.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~-~~~~ 89 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DAR----YFLGLGACRQSLGLYEQALQSYSYGALMDIN---E-PRFP 89 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C-THHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---C-cHHH
Confidence 4556666666665543 44445555543 332 222 4456677777666655444444433322221 1 1223
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHh
Q 002870 562 IPLGLGLLYLGKQESVEATAEVSK 585 (872)
Q Consensus 562 ~~lglgLl~~G~~e~a~~ll~~L~ 585 (872)
..+|..+...|+-+++...++...
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666666777766666555443
No 175
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=24.83 E-value=2.8e+02 Score=27.17 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=42.4
Q ss_pred CHHHHHHHHHhcCChhhhHHHhhccc----hHHHHHHHHhhcccCCCCChHHHHHHHHHHHHccCCHHHHHHHHHhCCCh
Q 002870 193 AEPEAVDLLMEVEDLDLLVEHVDATN----FKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNM 268 (872)
Q Consensus 193 ~e~eAvdlalE~~~ld~i~~~vd~~~----~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~k~~~~~~al~~al~l~d~ 268 (872)
+...=.++||+.++++.=.++.++.+ +.++-.-.+...+ ++++-..|.+.++|...+-+..-.+|.
T Consensus 7 D~~~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn----------~~lAe~cy~~~~D~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 7 DPHIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGN----------ASLAEMIYQTQHSFDKLSFLYLVTGDV 76 (177)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHTTCHHHHHHHHHHHTCH
T ss_pred ChHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 34455789999999985544433211 1111111111110 123333444444544444444445555
Q ss_pred HHHHHHHHhc---chHHHHHHHHHHHH
Q 002870 269 QYVKQIFTSC---DDLLRKKQFCYILA 292 (872)
Q Consensus 269 ~~i~~i~~~~---~d~~~~~Qlaf~la 292 (872)
+.++++-+-+ ++..++.|.+|.++
T Consensus 77 e~L~kla~iA~~~g~~n~af~~~l~lG 103 (177)
T 3mkq_B 77 NKLSKMQNIAQTREDFGSMLLNTFYNN 103 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCccHHHHHHHHHHcC
Confidence 5444443332 34556666666554
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=24.77 E-value=3.2e+02 Score=23.22 Aligned_cols=98 Identities=13% Similarity=0.008 Sum_probs=52.2
Q ss_pred HHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhH---hHHHHHHHhhhcCChhhHHHHHHHHh----hhhhhh
Q 002870 519 IAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLT---RLIPLGLGLLYLGKQESVEATAEVSK----TFNEKI 591 (872)
Q Consensus 519 ~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~---r~~~lglgLl~~G~~e~a~~ll~~L~----~~~~~i 591 (872)
...+...+|.++...++.+.+...+....+..+.. .+... -...+|..+...|+-+++...++... ..+++.
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 34567788888888888655444443322211110 12211 22335555666677666655544432 233344
Q ss_pred hhhhhHHHHHHhhhcCCCHHHHHHHH
Q 002870 592 RKYCDMTLLSCAYAGTGNVLKVQNLL 617 (872)
Q Consensus 592 ~r~~~~~~~~lAyaGTGn~~~i~~LL 617 (872)
........+|..|...|+.....+.+
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~ 112 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYH 112 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44445566778888888865444433
No 177
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=24.70 E-value=3.3e+02 Score=25.79 Aligned_cols=94 Identities=17% Similarity=0.077 Sum_probs=45.9
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHH----------------HHHhhhcCCCHHHHHHHHHhhcccC
Q 002870 561 LIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTL----------------LSCAYAGTGNVLKVQNLLGHCAQHH 624 (872)
Q Consensus 561 ~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~----------------~~lAyaGTGn~~~i~~LL~~~~~~~ 624 (872)
.+..|..++-.|+-+++...++...... |-. ..+.+. +|.+|...|+.......+.-+.+..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN-IDR-TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHH-HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC-hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3445666777787777777666654432 111 112223 5666666666543333333332221
Q ss_pred CCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhh
Q 002870 625 EKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQ 661 (872)
Q Consensus 625 ~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~ 661 (872)
.+ +......+|..+...|+. +.+...+...++
T Consensus 85 p~--~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~ 116 (208)
T 3urz_A 85 PN--NVDCLEACAEMQVCRGQE---KDALRMYEKILQ 116 (208)
T ss_dssp TT--CHHHHHHHHHHHHHHTCH---HHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHH
Confidence 11 344444445555555554 555555555443
No 178
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=24.30 E-value=4e+02 Score=24.16 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=7.9
Q ss_pred HHHHHHHHHcCCCCc
Q 002870 705 AAVISLGLIGSGTNN 719 (872)
Q Consensus 705 ~AiiAlGlV~aGt~n 719 (872)
.+...+|.+....++
T Consensus 148 ~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCcC
Confidence 344556665555544
No 179
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=23.91 E-value=4.8e+02 Score=24.95 Aligned_cols=165 Identities=10% Similarity=0.022 Sum_probs=93.2
Q ss_pred HHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhh-hhhhhhhhHHHHH
Q 002870 523 AISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFN-EKIRKYCDMTLLS 601 (872)
Q Consensus 523 aLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~-~~i~r~~~~~~~~ 601 (872)
-+..|.++.-.++-+.+...++...+..+.. ..-...+|..+...|+-+++...++.....+ ++-...-....+|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNS----PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCC----STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3556777777787665555555544433221 1123345666777788777777666655432 2333333356788
Q ss_pred HhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcC--ChhHHhHHHHHHh-hh
Q 002870 602 CAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYG--EQNIRRAVPLALG-LL 678 (872)
Q Consensus 602 lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~--~~~VR~ga~lALG-L~ 678 (872)
..|...|+.....+.+.-+.+...+ .......+|..+...|+. +.+...+....+.. ++.+. ..+| ..
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~----~~l~~~~ 152 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT--RLDMYGQIGSYFYNKGNF---PLAIQYMEKQIRPTTTDPKVF----YELGQAY 152 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCH---HHHHHHHGGGCCSSCCCHHHH----HHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHccCH---HHHHHHHHHHhhcCCCcHHHH----HHHHHHH
Confidence 8999999976555555444332222 334445555556666665 77777777665542 23332 3344 33
Q ss_pred ccCCCchHHHHHHHHhh-cCCch
Q 002870 679 CISNPKVNVMDTLSRLS-HDTDS 700 (872)
Q Consensus 679 ~agt~~~~aid~L~~l~-~D~d~ 700 (872)
+....-.++++.+.+.. .+|+.
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~p~~ 175 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELKPNI 175 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCccc
Confidence 43346667888777664 34443
No 180
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=23.59 E-value=5.8e+02 Score=25.75 Aligned_cols=160 Identities=10% Similarity=-0.070 Sum_probs=82.9
Q ss_pred ccccchhhHHhHhhhcc----CCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcC----CCCHHHHHHHHHHHHHHh
Q 002870 422 LLWDVDSGLAQIDKYFH----STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVG----REDACIRIGAIMGLGISY 493 (872)
Q Consensus 422 ~~~~~~~~l~~l~~yL~----s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~----~~~~~v~~gA~lGLGLay 493 (872)
..++.++++..+.+-+. ..+....+-++..+|.++....+ .+.++..+...+. ..+......+...+|.+|
T Consensus 48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 126 (307)
T 2ifu_A 48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR-MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34777777665543332 23444455667778877763322 2336665554432 233444456777889999
Q ss_pred ccCCCH-HHHHHHHHHhc---CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhH-HHHHHHh
Q 002870 494 AGTQND-QIRHKLSTILN---DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRL-IPLGLGL 568 (872)
Q Consensus 494 ~Gt~~~-~i~e~L~~~L~---d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~-~~lglgL 568 (872)
.. ++. +..+.+...+. +.. .......+-..+|.++...++-+-+-..++..+...+.. ....... +-+++|+
T Consensus 127 ~~-g~~~~A~~~~~~Al~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 127 EP-LDLSKAVHLYQQAAAVFENEE-RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM-ENYPTCYKKCIAQVL 203 (307)
T ss_dssp TT-TCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHH
Confidence 77 543 34444444432 111 112223466778888888887654433333322211110 1222222 3455666
Q ss_pred hhc--CChhhHHHHHHHHh
Q 002870 569 LYL--GKQESVEATAEVSK 585 (872)
Q Consensus 569 l~~--G~~e~a~~ll~~L~ 585 (872)
+++ |+.+++...++...
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 665 77777766666544
No 181
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=23.58 E-value=3.6e+02 Score=28.12 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=38.2
Q ss_pred hcCChhHHhHHHHHHhhhc--cCCCchHHH---HHHHHhhcCCchHHHHHHHHHHHHHcCCCCc
Q 002870 661 QYGEQNIRRAVPLALGLLC--ISNPKVNVM---DTLSRLSHDTDSEVAMAAVISLGLIGSGTNN 719 (872)
Q Consensus 661 ~~~~~~VR~ga~lALGL~~--agt~~~~ai---d~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n 719 (872)
.+.|+-+|.++.-.++-+. -|.+...++ ..+-++..|+|..||.+|+-++.-+...-++
T Consensus 177 ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 177 KSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 5556666666555444331 122234466 7788899999999999998888766544443
No 182
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=23.31 E-value=2.8e+02 Score=31.21 Aligned_cols=43 Identities=9% Similarity=0.100 Sum_probs=25.3
Q ss_pred CHHHHHHHHHhCCC---------hHHHHHHHHhcchHH------HHHHHHHHHHhhcc
Q 002870 254 EFPNALQIALFLDN---------MQYVKQIFTSCDDLL------RKKQFCYILARHGI 296 (872)
Q Consensus 254 ~~~~al~~al~l~d---------~~~i~~i~~~~~d~~------~~~Qlaf~larq~~ 296 (872)
+|.+.+...+.-.. |..+.+.+..+.|.+ .+-.+||++|+..+
T Consensus 251 ~Wre~lA~IlsN~~~~~~~~~~~p~~~~~~l~~LGd~L~~~g~~~aAhiCYL~a~~p~ 308 (441)
T 3mzk_B 251 NWKSIVAAVLINIPENNEDPLLIPPVVLEFLIEFGIFLTKKGLTAAASTLFIIGNVPL 308 (441)
T ss_dssp SHHHHHHHHHHTSCCCSSCTTCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCCchhhcccccchHHHHHHHHHHHHHhCCCcchhHHhHhccCCCc
Confidence 56666665554221 223455666665543 35779999997633
No 183
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=23.21 E-value=5.5e+02 Score=30.34 Aligned_cols=74 Identities=15% Similarity=0.047 Sum_probs=52.5
Q ss_pred hhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCc---------hHHHHHHHHhhcCCchHHHHHHHHHHH
Q 002870 641 VAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPK---------VNVMDTLSRLSHDTDSEVAMAAVISLG 711 (872)
Q Consensus 641 I~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~---------~~aid~L~~l~~D~d~~Vr~~AiiAlG 711 (872)
++..++ +.++-+++.| +..+.++|..+.-.|..++..++. +..+..|-.+.+|+.+-+|--|+.-+.
T Consensus 116 ~f~~~~---~~i~~Ll~lL-~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~ 191 (651)
T 3grl_A 116 IFIKQQ---ENVTLLLSLL-EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQ 191 (651)
T ss_dssp HHHHST---HHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHH
T ss_pred HHHcCC---ccHHHHHHHh-cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHH
Confidence 334554 5566666654 778999999999999988887765 134556677788988888877777776
Q ss_pred HHcCCCC
Q 002870 712 LIGSGTN 718 (872)
Q Consensus 712 lV~aGt~ 718 (872)
-+.-+..
T Consensus 192 ~Lt~~n~ 198 (651)
T 3grl_A 192 ALTRSNG 198 (651)
T ss_dssp HHHTTCH
T ss_pred HHhcCCH
Confidence 6655544
No 184
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=22.21 E-value=4.8e+02 Score=29.09 Aligned_cols=143 Identities=13% Similarity=-0.020 Sum_probs=72.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC-HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHH
Q 002870 466 ALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAII 543 (872)
Q Consensus 466 ~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~-~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll 543 (872)
+...+...+..... ...+...+|.+|...++ ++..+.+...+. ++ .. ..+-+.+|.++...++.+.+...+
T Consensus 8 A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~--~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 8 ELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP---GH--PEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST---TC--HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45445544432111 12467777888776665 355566666664 32 12 357777888888888766555555
Q ss_pred HHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcC---CCHHHHHHHHHhh
Q 002870 544 FALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGT---GNVLKVQNLLGHC 620 (872)
Q Consensus 544 ~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGT---Gn~~~i~~LL~~~ 620 (872)
+...+..+. .......+|..+...|+-+++...++......... ......++.+|... |+.....+.+.-+
T Consensus 81 ~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAAPE----HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE--PYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 444332221 12233445666677777777766666544432111 12334566677777 7766555444444
Q ss_pred c
Q 002870 621 A 621 (872)
Q Consensus 621 ~ 621 (872)
.
T Consensus 155 l 155 (568)
T 2vsy_A 155 V 155 (568)
T ss_dssp H
T ss_pred H
Confidence 3
No 185
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=21.85 E-value=1.9e+02 Score=26.25 Aligned_cols=118 Identities=13% Similarity=0.068 Sum_probs=61.5
Q ss_pred hccccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCC-CCHHHHHHHHHHHHHH-hccCCC
Q 002870 421 ILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR-EDACIRIGAIMGLGIS-YAGTQN 498 (872)
Q Consensus 421 I~~~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~-~~~~v~~gA~lGLGLa-y~Gt~~ 498 (872)
...++.++++..+.+.+....... -+.+.+|.++.... +.+.+...+...+.- ++. ..+...+|.+ |...++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNS--EQWALLGEYYLWQN-DYSNSLLAYRQALQLRGEN---AELYAALATVLYYQASQ 94 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCH--HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHTTT
T ss_pred hhccCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCC
Confidence 345666777666666554322222 35555666554322 234466666655431 111 2345566766 655555
Q ss_pred ---HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhc
Q 002870 499 ---DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDR 549 (872)
Q Consensus 499 ---~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~ 549 (872)
++..+.+...+. ++. .. .+-+.+|.++.-.++.+.+...+...+..
T Consensus 95 ~~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSN-EI----TALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhCCC-cH----HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 667777776664 332 22 25567888888888776655555554443
No 186
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=21.45 E-value=1.9e+02 Score=33.13 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHH
Q 002870 610 VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMD 689 (872)
Q Consensus 610 ~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid 689 (872)
..+|..++..|.++.. .||+.|+=+|..++-.+-+ ..+.+++.+|++..++.-+..+--||--+.-..+....-.
T Consensus 64 ~~Ai~a~lDLcEDed~---~IR~qaik~Lp~~ck~~~i--~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~ 138 (507)
T 3u0r_A 64 DSAINAQLDLCEDEDV---SIRRQAIKELPQFATGENL--PRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGG 138 (507)
T ss_dssp HHHHHHHHHHHTCSSH---HHHHHHHHHGGGGCCTTCH--HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHhcccH---HHHHHHHHhhHHHhhhhhh--hhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHH
Q ss_pred HHHHhhcCCchHHHHHHH
Q 002870 690 TLSRLSHDTDSEVAMAAV 707 (872)
Q Consensus 690 ~L~~l~~D~d~~Vr~~Ai 707 (872)
++.+..+ +++.||--++
T Consensus 139 lf~~i~~-~~e~~Rer~l 155 (507)
T 3u0r_A 139 LFSQILQ-GEDIVRERAI 155 (507)
T ss_dssp HHHHHHH-SCHHHHHHHH
T ss_pred HHHHHcc-cchHHHHHHH
No 187
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=21.31 E-value=5.2e+02 Score=24.35 Aligned_cols=94 Identities=4% Similarity=-0.176 Sum_probs=57.6
Q ss_pred HHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHH----------------HHHHhhhcCChhhHHHHHHHH
Q 002870 521 FSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIP----------------LGLGLLYLGKQESVEATAEVS 584 (872)
Q Consensus 521 ~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~----------------lglgLl~~G~~e~a~~ll~~L 584 (872)
-..+..|..++..++.+.+...++..+...+. .... ... +|..+...|+-+++...++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID---RTEM-YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH---HHHH-HHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHH-HHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 35678889999888877666666655443322 1222 223 566667777777777766665
Q ss_pred hhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhh
Q 002870 585 KTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHC 620 (872)
Q Consensus 585 ~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~ 620 (872)
...+... ....+.+|.+|...|+.......+.-+
T Consensus 81 l~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 81 LQKAPNN--VDCLEACAEMQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp HHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5432211 234567889999999976555544443
No 188
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=21.23 E-value=1.9e+02 Score=35.33 Aligned_cols=101 Identities=10% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcccCCCCccchhhhHhHhhhhhhc---------------chhhHhHHHHHHHHHhhcC---ChhHHhHHH
Q 002870 611 LKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMA---------------EELGLEMAIRSLEHLLQYG---EQNIRRAVP 672 (872)
Q Consensus 611 ~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~---------------~~~g~e~~~~il~~L~~~~---~~~VR~ga~ 672 (872)
..+++++.-...+.+.+-..|-+|+.++|-|+-+ +=. ....+.+-..+++. +|.||+.++
T Consensus 402 ~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~--~~l~~~v~p~l~~~~~~~p~vr~~a~ 479 (960)
T 1wa5_C 402 AHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV--DFFTKEIAPDLTSNNIPHIILRVDAI 479 (960)
T ss_dssp HHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH--HHHHHHTHHHHHCSSCSCHHHHHHHH
T ss_pred HHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHH--HHHHHHhHHHhcCCCCCCceehHHHH
Q ss_pred HHHhhhccC---CCchHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 002870 673 LALGLLCIS---NPKVNVMDTLSRLSHDTDSEVAMAAVISLGLI 713 (872)
Q Consensus 673 lALGL~~ag---t~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV 713 (872)
.++|-.+-- .--..++..|.+..+|++.-|+..|..|+.-+
T Consensus 480 ~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~ 523 (960)
T 1wa5_C 480 KYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKI 523 (960)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
No 189
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=20.54 E-value=1.1e+03 Score=27.80 Aligned_cols=117 Identities=11% Similarity=-0.016 Sum_probs=54.9
Q ss_pred HHHHHHHHHhccCCC-HHHHHHHHHHhc-CCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhH
Q 002870 484 GAIMGLGISYAGTQN-DQIRHKLSTILN-DAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRL 561 (872)
Q Consensus 484 gA~lGLGLay~Gt~~-~~i~e~L~~~L~-d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~ 561 (872)
.|...||.+|...++ ++..+.+...+. +++ . ..|-..||.++.-.++-+.+...++..++..+. ...-.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~---~--~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~----~~~a~ 80 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE---F--AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT----FADAY 80 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHH
Confidence 455666666666554 344555555553 331 2 245556666666666544333333322222111 12223
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHH
Q 002870 562 IPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVL 611 (872)
Q Consensus 562 ~~lglgLl~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~ 611 (872)
..+|..+...|+-+++...++...+.+... ..+..-+|.+|...|+..
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~--~~a~~~Lg~~~~~~g~~~ 128 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAF--ADAHSNLASIHKDSGNIP 128 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Confidence 345555666666665555554433322111 112334566666666643
No 190
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=20.14 E-value=5.4e+02 Score=28.93 Aligned_cols=157 Identities=18% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCcchHHHHHHHHHHHhhhccCcccccchhhhhcCCCCCCCC
Q 002870 68 ESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGS 147 (872)
Q Consensus 68 ~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~ 147 (872)
++|.+.++.+||.+.-=| .|...-+-.-=++ ++.++ ++-++++.+..-.+..+. ..
T Consensus 257 ~k~~ehl~~~~~~ini~k-----------~~~~~~~~~~w~e--------~~~ly--~~~~e~d~A~~tm~~h~~---~a 312 (449)
T 1b89_A 257 QKMREHLELFWSRVNIPK-----------VLRAAEQAHLWAE--------LVFLY--DKYEEYDNAIITMMNHPT---DA 312 (449)
T ss_dssp HHHHHHHHHHSTTSCHHH-----------HHHHHHTTTCHHH--------HHHHH--HHTTCHHHHHHHHHHSTT---TT
T ss_pred HHHHHHHHHHHHHhcCcH-----------HHHHHHHHHHHHH--------HHHHH--HhhchHHHHHHHHHhCCh---hh
Q ss_pred cccHHHHHHHHH---------HHHHHHHhccCccCHHHHHHHH------HHHHHHHhcCCC------HHHHH--------
Q 002870 148 WGHEYVRNLAGE---------IAQEYAKRQTDEASIDDLMELV------QEIVAFHMKHNA------EPEAV-------- 198 (872)
Q Consensus 148 wgheYvr~L~~e---------i~~~y~~~~~~~~~~~~L~~lv------~~iv~~~l~~n~------e~eAv-------- 198 (872)
|-|.....++.+ .+..|. .+...-+.+|...+ .+.|.++-++|. |-++|
T Consensus 313 ~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~v 390 (449)
T 1b89_A 313 WKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSV 390 (449)
T ss_dssp CCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHH
T ss_pred hhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHH
Q ss_pred -----HHHHhcCChhhhHHHhhc-cchHHHHHHHHhhcccCCCCChHHHHHHHHHHHHccCCH
Q 002870 199 -----DLLMEVEDLDLLVEHVDA-TNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEF 255 (872)
Q Consensus 199 -----dlalE~~~ld~i~~~vd~-~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~k~~~~ 255 (872)
+|++|-++-+.|..-||. +||..+-+ ++.+-.-+..++=+++..+|++.++|
T Consensus 391 nealn~l~ieeed~~~lr~si~~~~nfd~~~l-----~~~le~h~l~~~r~iaa~~~~~~~~~ 448 (449)
T 1b89_A 391 NESLNNLFITEEDYQALRTSIDAYDNFDNISL-----AQRLEKHELIEFRRIAAYLFKGNNRW 448 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHCCCSCHHHH-----HHHHTTCSSHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhcCcCHHHH-----HHHHhcCchHHHHHHHHHHHHhccCC
Done!