Query 002871
Match_columns 872
No_of_seqs 805 out of 3263
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:50:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 1.4E-29 4.9E-34 261.3 16.2 166 191-358 12-185 (213)
2 3smz_A Protein raver-1, ribonu 100.0 7.1E-29 2.4E-33 265.6 20.5 235 101-362 27-272 (284)
3 3md3_A Nuclear and cytoplasmic 100.0 2.8E-28 9.5E-33 238.0 19.2 157 195-353 1-166 (166)
4 2ghp_A U4/U6 snRNA-associated 100.0 4.8E-28 1.6E-32 260.2 19.2 226 101-354 46-291 (292)
5 1b7f_A Protein (SXL-lethal pro 100.0 9.3E-28 3.2E-32 235.5 19.1 155 193-351 2-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 1.4E-27 4.7E-32 233.4 19.6 155 193-351 1-167 (167)
7 3smz_A Protein raver-1, ribonu 100.0 2.6E-27 9E-32 253.4 20.7 179 192-382 20-211 (284)
8 1l3k_A Heterogeneous nuclear r 100.0 1.6E-27 5.6E-32 239.9 17.8 169 188-358 7-187 (196)
9 2qfj_A FBP-interacting repress 100.0 1.6E-27 5.3E-32 243.7 17.9 164 193-356 27-207 (216)
10 1fje_B Nucleolin RBD12, protei 99.9 5.1E-28 1.7E-32 239.9 13.7 162 190-354 9-174 (175)
11 2adc_A Polypyrimidine tract-bi 99.9 3.3E-27 1.1E-31 246.2 20.2 164 191-354 31-228 (229)
12 3pgw_A U1-A; protein-RNA compl 99.9 5.6E-27 1.9E-31 250.7 21.0 164 190-353 5-282 (282)
13 2g4b_A Splicing factor U2AF 65 99.9 3.3E-27 1.1E-31 232.8 16.7 154 192-351 2-171 (172)
14 3tyt_A Heterogeneous nuclear r 99.9 5.6E-27 1.9E-31 241.7 18.4 159 193-351 3-204 (205)
15 1qm9_A Polypyrimidine tract-bi 99.9 3E-27 1E-31 239.5 15.7 162 193-354 2-197 (198)
16 3nmr_A Cugbp ELAV-like family 99.9 1.2E-26 4E-31 228.8 18.3 157 193-352 2-175 (175)
17 2yh0_A Splicing factor U2AF 65 99.9 7E-27 2.4E-31 235.6 17.0 162 193-356 3-196 (198)
18 2cjk_A Nuclear polyadenylated 99.9 2.3E-27 7.8E-32 232.8 12.9 155 193-354 2-166 (167)
19 2ghp_A U4/U6 snRNA-associated 99.9 1E-26 3.5E-31 249.9 17.8 183 188-382 35-237 (292)
20 3sde_A Paraspeckle component 1 99.9 8.2E-25 2.8E-29 232.7 18.3 157 191-358 19-183 (261)
21 2i2y_A Fusion protein consists 99.8 4.8E-19 1.6E-23 172.8 12.2 127 228-355 10-149 (150)
22 2kn4_A Immunoglobulin G-bindin 99.8 3.1E-18 1.1E-22 168.0 14.7 131 227-357 9-153 (158)
23 4f25_A Polyadenylate-binding p 99.7 6.8E-18 2.3E-22 157.8 10.6 103 193-295 4-113 (115)
24 4f25_A Polyadenylate-binding p 99.6 5.4E-16 1.8E-20 144.9 9.3 81 278-358 4-87 (115)
25 4fxv_A ELAV-like protein 1; RN 99.6 7.1E-16 2.4E-20 140.6 9.2 76 278-353 18-98 (99)
26 3lqv_A PRE-mRNA branch site pr 99.6 7.3E-16 2.5E-20 143.2 8.1 102 192-305 6-109 (115)
27 4fxv_A ELAV-like protein 1; RN 99.6 1.5E-15 5.3E-20 138.4 10.0 76 193-268 18-98 (99)
28 2lea_A Serine/arginine-rich sp 99.6 6E-16 2.1E-20 149.0 7.2 121 232-357 5-130 (135)
29 3s8s_A Histone-lysine N-methyl 99.6 2.8E-15 9.4E-20 139.5 9.7 83 278-360 5-92 (110)
30 3lqv_A PRE-mRNA branch site pr 99.6 3.6E-15 1.2E-19 138.5 10.0 103 278-384 7-111 (115)
31 2hvz_A Splicing factor, argini 99.6 3.5E-15 1.2E-19 135.4 9.3 94 195-288 1-100 (101)
32 3md3_A Nuclear and cytoplasmic 99.6 6.4E-15 2.2E-19 143.2 11.7 150 101-267 5-165 (166)
33 3tyt_A Heterogeneous nuclear r 99.6 5.6E-15 1.9E-19 152.0 10.8 105 278-382 3-149 (205)
34 1fxl_A Paraneoplastic encephal 99.6 8.9E-15 3E-19 142.3 11.3 104 279-382 2-114 (167)
35 3r27_A HnRNP L, heterogeneous 99.6 1.1E-14 3.7E-19 133.5 10.8 81 189-270 16-98 (100)
36 3nmr_A Cugbp ELAV-like family 99.6 1.3E-14 4.6E-19 142.3 11.6 151 101-266 8-174 (175)
37 1whw_A Hypothetical protein ri 99.6 2.7E-14 9.3E-19 128.9 12.5 82 191-272 5-91 (99)
38 1sjq_A Polypyrimidine tract-bi 99.5 1.5E-14 5.2E-19 133.7 10.8 82 191-273 13-96 (105)
39 1b7f_A Protein (SXL-lethal pro 99.5 1.3E-14 4.3E-19 141.8 10.7 104 279-382 3-115 (168)
40 2lxi_A RNA-binding protein 10; 99.5 2.5E-15 8.4E-20 134.8 5.2 78 280-357 2-86 (91)
41 4f02_A Polyadenylate-binding p 99.5 7.5E-15 2.5E-19 151.1 9.5 152 101-269 20-181 (213)
42 1rk8_A CG8781-PA, CG8781-PA pr 99.5 7.6E-15 2.6E-19 145.6 9.2 123 236-358 11-156 (165)
43 1fje_B Nucleolin RBD12, protei 99.5 1.1E-14 3.9E-19 143.7 10.4 156 101-269 18-174 (175)
44 2yh0_A Splicing factor U2AF 65 99.5 6.1E-14 2.1E-18 140.8 15.6 167 101-271 9-196 (198)
45 1whw_A Hypothetical protein ri 99.5 1.8E-14 6E-19 130.1 10.5 81 277-357 6-91 (99)
46 2lxi_A RNA-binding protein 10; 99.5 4.7E-15 1.6E-19 133.0 6.6 79 194-272 1-86 (91)
47 3s8s_A Histone-lysine N-methyl 99.5 1.7E-14 5.9E-19 134.1 10.6 79 191-269 3-86 (110)
48 2g4b_A Splicing factor U2AF 65 99.5 4E-14 1.4E-18 139.0 13.6 153 101-266 9-171 (172)
49 2do4_A Squamous cell carcinoma 99.5 3.2E-14 1.1E-18 128.8 11.1 81 276-356 14-98 (100)
50 1x4a_A Splicing factor, argini 99.5 3.2E-14 1.1E-18 130.9 11.2 82 276-357 19-102 (109)
51 1x5u_A Splicing factor 3B subu 99.5 5.8E-14 2E-18 128.1 12.8 83 189-271 10-97 (105)
52 2ad9_A Polypyrimidine tract-bi 99.5 3.2E-14 1.1E-18 134.5 11.2 89 184-273 21-111 (119)
53 3md1_A Nuclear and cytoplasmic 99.5 2.5E-14 8.4E-19 124.7 9.7 76 280-355 2-82 (83)
54 2cq0_A Eukaryotic translation 99.5 3E-14 1E-18 129.7 10.7 82 276-357 12-98 (103)
55 1wex_A Hypothetical protein (r 99.5 5E-14 1.7E-18 129.9 12.2 84 187-271 8-93 (104)
56 1x5u_A Splicing factor 3B subu 99.5 2.6E-14 9E-19 130.4 10.2 82 276-357 12-98 (105)
57 3bs9_A Nucleolysin TIA-1 isofo 99.5 2.1E-14 7.2E-19 126.2 9.2 77 278-354 5-86 (87)
58 2cph_A RNA binding motif prote 99.5 6.3E-14 2.1E-18 128.1 12.6 84 189-272 10-100 (107)
59 1sjq_A Polypyrimidine tract-bi 99.5 1.2E-14 4.1E-19 134.4 7.7 80 278-358 15-96 (105)
60 2dgs_A DAZ-associated protein 99.5 7.8E-14 2.7E-18 126.0 13.0 82 190-272 6-92 (99)
61 3r27_A HnRNP L, heterogeneous 99.5 2E-14 6.7E-19 131.8 9.1 77 278-355 20-98 (100)
62 2cph_A RNA binding motif prote 99.5 3.6E-14 1.2E-18 129.7 10.9 83 275-357 11-100 (107)
63 1x4a_A Splicing factor, argini 99.5 7.6E-14 2.6E-18 128.5 13.0 84 189-272 17-102 (109)
64 2dgo_A Cytotoxic granule-assoc 99.5 8.1E-14 2.8E-18 129.3 13.3 84 189-272 10-98 (115)
65 2d9p_A Polyadenylate-binding p 99.5 3.2E-14 1.1E-18 129.5 10.3 84 275-358 11-97 (103)
66 3bs9_A Nucleolysin TIA-1 isofo 99.5 3.3E-14 1.1E-18 125.0 10.1 78 192-269 4-86 (87)
67 2cqc_A Arginine/serine-rich sp 99.5 3.9E-14 1.3E-18 126.6 10.6 79 276-354 12-95 (95)
68 2cjk_A Nuclear polyadenylated 99.5 1.4E-14 4.7E-19 141.6 8.3 147 101-269 8-166 (167)
69 2kn4_A Immunoglobulin G-bindin 99.5 6.6E-14 2.2E-18 137.1 13.0 133 139-272 12-153 (158)
70 2dgv_A HnRNP M, heterogeneous 99.5 5.6E-14 1.9E-18 125.0 11.3 82 191-272 5-89 (92)
71 2dnm_A SRP46 splicing factor; 99.5 4.7E-14 1.6E-18 128.4 11.1 84 188-271 7-95 (103)
72 2do4_A Squamous cell carcinoma 99.5 6.1E-14 2.1E-18 127.0 11.7 82 189-270 12-97 (100)
73 2cpz_A CUG triplet repeat RNA- 99.5 2.6E-14 9.1E-19 132.8 9.5 82 277-358 23-109 (115)
74 2adc_A Polypyrimidine tract-bi 99.5 1.6E-13 5.3E-18 142.8 16.4 159 101-269 39-228 (229)
75 2x1f_A MRNA 3'-END-processing 99.5 4.5E-14 1.5E-18 127.0 10.7 78 193-270 1-83 (96)
76 2cqi_A Nucleolysin TIAR; RNA r 99.5 5.4E-14 1.9E-18 128.0 11.3 83 276-358 12-97 (103)
77 2dnz_A Probable RNA-binding pr 99.5 6.6E-14 2.3E-18 125.2 11.7 81 192-272 3-88 (95)
78 2cq0_A Eukaryotic translation 99.5 5.5E-14 1.9E-18 127.9 11.3 84 189-272 10-98 (103)
79 3md1_A Nuclear and cytoplasmic 99.5 4.3E-14 1.5E-18 123.1 10.1 77 194-270 1-82 (83)
80 2cqi_A Nucleolysin TIAR; RNA r 99.5 9.2E-14 3.2E-18 126.4 12.5 83 189-271 10-95 (103)
81 2cq3_A RNA-binding protein 9; 99.5 1.2E-13 4E-18 125.7 13.3 84 189-272 10-96 (103)
82 2cq1_A PTB-like protein L; RRM 99.5 8.5E-14 2.9E-18 127.7 12.3 82 189-271 10-93 (101)
83 2d9p_A Polyadenylate-binding p 99.5 7.4E-14 2.5E-18 127.1 11.9 84 189-272 10-96 (103)
84 2lkz_A RNA-binding protein 5; 99.5 9.4E-15 3.2E-19 132.6 5.8 76 278-353 8-94 (95)
85 2qfj_A FBP-interacting repress 99.5 1.4E-13 4.7E-18 140.1 15.2 162 101-272 33-208 (216)
86 1qm9_A Polypyrimidine tract-bi 99.5 1.2E-13 4E-18 139.5 14.5 159 101-269 8-197 (198)
87 1x4d_A Matrin 3; structural ge 99.5 4.5E-14 1.5E-18 129.9 10.3 79 191-270 12-93 (102)
88 2dgo_A Cytotoxic granule-assoc 99.5 5.5E-14 1.9E-18 130.5 11.0 83 276-358 12-99 (115)
89 2wbr_A GW182, gawky, LD47780P; 99.5 2.5E-14 8.7E-19 127.6 8.3 74 278-352 6-79 (89)
90 2dnq_A RNA-binding protein 4B; 99.5 8.4E-14 2.9E-18 123.7 11.7 79 191-272 5-83 (90)
91 1p27_B RNA-binding protein 8A; 99.5 4.9E-14 1.7E-18 128.8 10.4 81 190-270 19-104 (106)
92 2dnz_A Probable RNA-binding pr 99.5 4.6E-14 1.6E-18 126.2 10.0 80 278-357 4-88 (95)
93 2dgs_A DAZ-associated protein 99.5 5.8E-14 2E-18 126.9 10.7 80 277-357 8-92 (99)
94 2cpz_A CUG triplet repeat RNA- 99.5 6.3E-14 2.2E-18 130.2 11.2 84 189-272 20-108 (115)
95 1why_A Hypothetical protein ri 99.5 5.6E-14 1.9E-18 126.6 10.5 78 278-356 16-95 (97)
96 2cq1_A PTB-like protein L; RRM 99.5 7.5E-14 2.6E-18 128.1 11.5 81 277-358 13-95 (101)
97 1x4h_A RNA-binding protein 28; 99.5 6.8E-14 2.3E-18 128.7 11.3 82 277-358 13-105 (111)
98 2x1f_A MRNA 3'-END-processing 99.5 5E-14 1.7E-18 126.7 10.1 79 279-357 2-85 (96)
99 1x4h_A RNA-binding protein 28; 99.5 1E-13 3.5E-18 127.5 12.3 84 189-272 10-104 (111)
100 3mdf_A Peptidyl-prolyl CIS-tra 99.5 4.4E-14 1.5E-18 123.7 9.3 75 278-352 6-85 (85)
101 2cpf_A RNA binding motif prote 99.5 5.6E-14 1.9E-18 126.6 10.3 81 192-272 3-91 (98)
102 2dgx_A KIAA0430 protein; RRM d 99.5 5.3E-14 1.8E-18 126.9 10.1 79 278-356 8-92 (96)
103 3mdf_A Peptidyl-prolyl CIS-tra 99.5 6.1E-14 2.1E-18 122.7 10.2 77 191-267 4-85 (85)
104 2i2y_A Fusion protein consists 99.5 7E-14 2.4E-18 136.1 11.6 128 141-270 14-149 (150)
105 2dnq_A RNA-binding protein 4B; 99.5 4.6E-14 1.6E-18 125.4 9.4 78 277-357 6-83 (90)
106 2cpf_A RNA binding motif prote 99.5 3.3E-14 1.1E-18 128.1 8.6 80 278-357 4-91 (98)
107 2e5h_A Zinc finger CCHC-type a 99.5 8.7E-14 3E-18 124.2 11.2 76 277-352 14-94 (94)
108 4a8x_A RNA-binding protein wit 99.5 3.9E-14 1.3E-18 124.6 8.8 79 278-356 3-87 (88)
109 2dgt_A RNA-binding protein 30; 99.5 9.1E-14 3.1E-18 124.0 11.2 81 189-272 5-85 (92)
110 2cq3_A RNA-binding protein 9; 99.5 8.6E-14 2.9E-18 126.6 11.2 82 276-357 12-96 (103)
111 1oo0_B CG8781-PA, drosophila Y 99.5 4.9E-14 1.7E-18 129.8 9.7 81 277-357 24-109 (110)
112 2dnh_A Bruno-like 5, RNA bindi 99.5 1.5E-13 5.1E-18 125.4 12.8 82 191-272 12-100 (105)
113 1fjc_A Nucleolin RBD2, protein 99.5 3E-14 1E-18 127.9 8.0 82 276-357 13-94 (96)
114 1why_A Hypothetical protein ri 99.5 1.3E-13 4.5E-18 124.2 12.2 79 191-270 14-94 (97)
115 1x4d_A Matrin 3; structural ge 99.5 4.2E-14 1.4E-18 130.1 9.0 77 278-355 14-93 (102)
116 1x5s_A Cold-inducible RNA-bind 99.5 7.8E-14 2.7E-18 126.5 10.7 82 191-272 9-95 (102)
117 2dnm_A SRP46 splicing factor; 99.5 4.2E-14 1.4E-18 128.7 8.9 81 277-357 11-96 (103)
118 1p27_B RNA-binding protein 8A; 99.5 3.6E-14 1.2E-18 129.7 8.5 80 277-356 21-105 (106)
119 2e5h_A Zinc finger CCHC-type a 99.5 8.6E-14 3E-18 124.2 10.7 78 190-267 12-94 (94)
120 2dnh_A Bruno-like 5, RNA bindi 99.5 7.4E-14 2.5E-18 127.4 10.5 82 277-358 13-101 (105)
121 2cqb_A Peptidyl-prolyl CIS-tra 99.5 4.7E-14 1.6E-18 128.0 9.0 82 277-358 10-96 (102)
122 1l3k_A Heterogeneous nuclear r 99.5 1.2E-13 4E-18 138.5 12.9 157 101-272 18-186 (196)
123 2jvr_A Nucleolar protein 3; RN 99.5 3.3E-14 1.1E-18 132.7 8.1 78 278-355 27-106 (111)
124 2cqc_A Arginine/serine-rich sp 99.5 8.3E-14 2.8E-18 124.4 10.4 79 190-268 11-94 (95)
125 2cqb_A Peptidyl-prolyl CIS-tra 99.5 6.9E-14 2.4E-18 126.9 9.9 82 191-272 9-95 (102)
126 1wf1_A RNA-binding protein RAL 99.5 3.8E-14 1.3E-18 130.8 8.3 96 257-356 6-102 (110)
127 2dgt_A RNA-binding protein 30; 99.5 8E-14 2.7E-18 124.4 10.0 79 276-357 7-85 (92)
128 2jrs_A RNA-binding protein 39; 99.5 8.1E-14 2.8E-18 128.8 10.4 82 189-270 21-107 (108)
129 2dgp_A Bruno-like 4, RNA bindi 99.5 1.1E-13 3.9E-18 126.3 11.1 83 189-271 8-98 (106)
130 1x5t_A Splicing factor 3B subu 99.5 5.4E-14 1.8E-18 126.1 8.6 81 192-272 3-89 (96)
131 2dgv_A HnRNP M, heterogeneous 99.5 5E-14 1.7E-18 125.3 8.4 80 278-357 7-89 (92)
132 2jvo_A Nucleolar protein 3; nu 99.5 4.4E-14 1.5E-18 130.7 8.3 80 275-357 27-106 (108)
133 2dnp_A RNA-binding protein 14; 99.5 8.2E-14 2.8E-18 123.8 9.7 78 277-357 7-84 (90)
134 3pgw_S U1-70K; protein-RNA com 99.5 1.3E-14 4.5E-19 165.6 5.7 146 211-356 9-184 (437)
135 1whx_A Hypothetical protein ri 99.5 4.3E-14 1.5E-18 131.3 8.1 77 191-268 7-83 (111)
136 1x5s_A Cold-inducible RNA-bind 99.5 4.1E-14 1.4E-18 128.4 7.7 82 277-358 10-96 (102)
137 2ywk_A Putative RNA-binding pr 99.5 7.4E-14 2.5E-18 124.9 9.3 77 277-353 14-94 (95)
138 2cpi_A CCR4-NOT transcription 99.5 1.1E-13 3.8E-18 128.2 10.8 80 276-355 12-102 (111)
139 1wex_A Hypothetical protein (r 99.5 7E-14 2.4E-18 128.9 9.3 80 277-357 13-94 (104)
140 2wbr_A GW182, gawky, LD47780P; 99.5 6.6E-14 2.3E-18 124.9 8.8 73 193-266 6-78 (89)
141 2xnq_A Nuclear polyadenylated 99.5 1.1E-13 3.6E-18 125.5 10.3 76 277-355 20-96 (97)
142 1wi8_A EIF-4B, eukaryotic tran 99.5 1.6E-13 5.4E-18 125.2 11.5 82 189-272 10-97 (104)
143 3sde_A Paraspeckle component 1 99.5 8.4E-14 2.9E-18 147.8 11.2 104 276-382 19-122 (261)
144 2jrs_A RNA-binding protein 39; 99.5 7.7E-14 2.6E-18 129.0 9.5 81 275-355 22-107 (108)
145 1wi8_A EIF-4B, eukaryotic tran 99.5 8.7E-14 3E-18 127.0 9.7 80 277-358 13-98 (104)
146 1fjc_A Nucleolin RBD2, protein 99.5 6E-14 2E-18 125.9 8.4 82 190-271 12-93 (96)
147 2ytc_A PRE-mRNA-splicing facto 99.5 1.1E-13 3.8E-18 121.2 9.9 78 189-267 7-85 (85)
148 2cpd_A Apobec-1 stimulating pr 99.5 1.7E-13 5.6E-18 124.0 11.4 77 277-356 13-91 (99)
149 1x4g_A Nucleolysin TIAR; struc 99.5 7.7E-14 2.6E-18 128.5 9.3 80 278-358 24-103 (109)
150 2cpj_A Non-POU domain-containi 99.5 1.1E-13 3.7E-18 125.2 10.1 81 190-271 11-91 (99)
151 3p5t_L Cleavage and polyadenyl 99.5 1.6E-14 5.4E-19 128.7 4.5 77 280-356 2-85 (90)
152 2ywk_A Putative RNA-binding pr 99.5 8.2E-14 2.8E-18 124.6 9.2 80 188-267 10-93 (95)
153 1u6f_A Tcubp1, RNA-binding pro 99.5 8.6E-14 3E-18 133.5 9.9 83 276-358 39-126 (139)
154 2e5j_A Methenyltetrahydrofolat 99.5 4.9E-14 1.7E-18 127.1 7.7 80 277-356 17-96 (97)
155 1x5t_A Splicing factor 3B subu 99.5 4.3E-14 1.5E-18 126.7 7.2 81 278-358 4-90 (96)
156 2la4_A Nuclear and cytoplasmic 99.5 7.8E-14 2.7E-18 126.5 9.0 77 192-269 25-101 (101)
157 2ad9_A Polypyrimidine tract-bi 99.5 4.9E-14 1.7E-18 133.2 7.9 81 277-358 29-111 (119)
158 3ns6_A Eukaryotic translation 99.5 2.7E-14 9.3E-19 130.0 5.9 78 278-355 5-94 (100)
159 2dhg_A TRNA selenocysteine ass 99.5 1.6E-13 5.4E-18 125.0 10.9 82 191-272 6-93 (104)
160 1oo0_B CG8781-PA, drosophila Y 99.5 1.2E-13 4.1E-18 127.2 10.2 82 189-270 21-107 (110)
161 2lkz_A RNA-binding protein 5; 99.5 5.5E-14 1.9E-18 127.5 7.8 77 191-267 6-93 (95)
162 2dgp_A Bruno-like 4, RNA bindi 99.5 8.2E-14 2.8E-18 127.3 8.9 82 276-357 10-99 (106)
163 2la4_A Nuclear and cytoplasmic 99.5 4.3E-14 1.5E-18 128.2 7.0 76 278-354 26-101 (101)
164 1x4c_A Splicing factor, argini 99.5 1.2E-13 4.3E-18 127.2 10.2 78 278-357 14-96 (108)
165 2dgu_A Heterogeneous nuclear r 99.5 1.1E-13 3.8E-18 126.2 9.7 78 278-358 10-87 (103)
166 2cq4_A RNA binding motif prote 99.5 3.3E-14 1.1E-18 131.9 6.2 80 277-357 23-107 (114)
167 2err_A Ataxin-2-binding protei 99.5 6.8E-14 2.3E-18 129.3 8.3 82 274-355 24-108 (109)
168 2dgu_A Heterogeneous nuclear r 99.5 2.2E-13 7.5E-18 124.2 11.5 79 191-272 8-86 (103)
169 4a8x_A RNA-binding protein wit 99.5 1.5E-13 5.2E-18 120.8 10.1 78 193-270 3-86 (88)
170 1x4c_A Splicing factor, argini 99.5 2.8E-13 9.5E-18 124.8 12.3 80 190-271 11-95 (108)
171 2fc9_A NCL protein; structure 99.5 8.4E-14 2.9E-18 126.2 8.5 82 276-357 12-94 (101)
172 2cpj_A Non-POU domain-containi 99.5 9.1E-14 3.1E-18 125.7 8.7 79 277-356 13-91 (99)
173 2ytc_A PRE-mRNA-splicing facto 99.5 1E-13 3.5E-18 121.4 8.8 76 276-352 9-85 (85)
174 2fc9_A NCL protein; structure 99.5 1.4E-13 4.8E-18 124.8 9.9 83 190-272 11-94 (101)
175 2e5j_A Methenyltetrahydrofolat 99.5 1.2E-13 4.1E-18 124.6 9.4 80 191-270 16-95 (97)
176 2kxn_B Transformer-2 protein h 99.5 1.3E-13 4.3E-18 131.8 10.0 79 277-355 44-127 (129)
177 2dnp_A RNA-binding protein 14; 99.5 2.2E-13 7.4E-18 121.1 10.9 78 191-271 6-83 (90)
178 2dgx_A KIAA0430 protein; RRM d 99.5 1.8E-13 6.2E-18 123.4 10.5 81 192-272 7-93 (96)
179 2a3j_A U1 small nuclear ribonu 99.5 1.7E-13 5.8E-18 130.9 10.8 80 191-270 26-111 (127)
180 2fy1_A RNA-binding motif prote 99.5 2E-13 6.7E-18 127.9 10.9 81 191-271 4-88 (116)
181 2khc_A Testis-specific RNP-typ 99.5 1.1E-13 3.9E-18 128.9 9.3 77 276-352 37-118 (118)
182 2div_A TRNA selenocysteine ass 99.5 1.2E-13 4.3E-18 124.5 9.3 81 191-271 6-96 (99)
183 1x4g_A Nucleolysin TIAR; struc 99.5 2.4E-13 8.2E-18 125.2 11.3 81 191-272 22-102 (109)
184 3ex7_B RNA-binding protein 8A; 99.5 1.7E-13 6E-18 129.1 10.6 83 189-271 17-104 (126)
185 2kxn_B Transformer-2 protein h 99.5 1.5E-13 5.1E-18 131.3 10.2 82 189-270 41-127 (129)
186 2cqd_A RNA-binding region cont 99.5 2.4E-13 8.4E-18 126.4 11.4 84 188-272 11-99 (116)
187 2fc8_A NCL protein; structure 99.5 1.8E-13 6.2E-18 124.1 10.2 84 274-357 10-95 (102)
188 2la6_A RNA-binding protein FUS 99.5 1.3E-13 4.3E-18 124.8 9.1 77 276-352 10-99 (99)
189 2xnq_A Nuclear polyadenylated 99.5 2.6E-13 8.8E-18 122.9 11.2 77 190-269 18-95 (97)
190 2cpd_A Apobec-1 stimulating pr 99.5 4.9E-13 1.7E-17 120.9 12.9 79 190-271 11-91 (99)
191 2kvi_A Nuclear polyadenylated 99.5 1.3E-13 4.5E-18 124.2 9.1 79 191-272 7-86 (96)
192 2cpe_A RNA-binding protein EWS 99.5 1.2E-13 4E-18 127.9 8.9 82 276-357 12-106 (113)
193 3p5t_L Cleavage and polyadenyl 99.5 4.5E-14 1.5E-18 125.7 5.9 77 195-271 2-85 (90)
194 2err_A Ataxin-2-binding protei 99.5 1.3E-13 4.3E-18 127.5 9.1 82 188-269 23-107 (109)
195 2a3j_A U1 small nuclear ribonu 99.5 1.1E-13 3.8E-18 132.2 8.8 81 278-358 28-114 (127)
196 3ucg_A Polyadenylate-binding p 99.5 9.2E-14 3.1E-18 122.7 7.7 76 278-354 5-85 (89)
197 2dhg_A TRNA selenocysteine ass 99.5 8.7E-14 3E-18 126.7 7.7 81 278-358 8-94 (104)
198 2dh8_A DAZ-associated protein 99.5 2E-13 6.8E-18 124.7 10.1 84 188-272 10-98 (105)
199 1p1t_A Cleavage stimulation fa 99.5 5.1E-14 1.7E-18 128.1 6.2 81 190-270 4-89 (104)
200 3pgw_A U1-A; protein-RNA compl 99.5 1.9E-13 6.6E-18 145.6 11.7 79 277-355 7-91 (282)
201 3ns6_A Eukaryotic translation 99.5 5.8E-14 2E-18 127.8 6.5 78 192-269 4-93 (100)
202 2jvo_A Nucleolar protein 3; nu 99.5 1.5E-13 5.3E-18 127.0 9.5 79 189-270 26-104 (108)
203 2cpe_A RNA-binding protein EWS 99.5 2.1E-13 7.1E-18 126.2 10.3 84 189-272 10-106 (113)
204 2khc_A Testis-specific RNP-typ 99.5 1.7E-13 5.8E-18 127.8 9.8 78 189-266 35-117 (118)
205 1nu4_A U1A RNA binding domain; 99.5 1.7E-13 5.7E-18 123.1 9.4 80 191-270 5-90 (97)
206 2do0_A HnRNP M, heterogeneous 99.5 2.5E-13 8.7E-18 125.7 10.9 81 277-357 13-97 (114)
207 1x4f_A Matrin 3; structural ge 99.5 1.2E-13 4.1E-18 129.2 8.6 80 191-271 22-104 (112)
208 2fy1_A RNA-binding motif prote 99.5 1.1E-13 3.7E-18 129.6 8.4 79 278-356 6-88 (116)
209 2cqd_A RNA-binding region cont 99.5 1.7E-13 5.8E-18 127.5 9.7 83 275-358 13-100 (116)
210 2dng_A Eukaryotic translation 99.4 2.3E-13 7.7E-18 124.0 10.3 80 277-358 13-97 (103)
211 2dng_A Eukaryotic translation 99.4 3.5E-13 1.2E-17 122.8 11.4 82 189-272 10-96 (103)
212 2j76_E EIF-4B, EIF4B, eukaryot 99.4 8.4E-14 2.9E-18 126.5 7.3 77 277-355 17-99 (100)
213 2do0_A HnRNP M, heterogeneous 99.4 4.2E-13 1.4E-17 124.2 12.1 80 190-269 11-94 (114)
214 1whx_A Hypothetical protein ri 99.4 1E-13 3.5E-18 128.7 8.0 76 278-354 9-84 (111)
215 2nlw_A Eukaryotic translation 99.4 1.6E-13 5.6E-18 125.8 9.2 78 277-354 13-100 (105)
216 3ex7_B RNA-binding protein 8A; 99.4 1.2E-13 4.2E-18 130.2 8.5 81 277-357 20-105 (126)
217 2hvz_A Splicing factor, argini 99.4 4.8E-14 1.6E-18 127.9 5.5 77 280-356 1-77 (101)
218 2la6_A RNA-binding protein FUS 99.4 2.3E-13 7.9E-18 123.0 10.0 77 190-266 9-98 (99)
219 1u6f_A Tcubp1, RNA-binding pro 99.4 2.9E-13 9.9E-18 129.8 11.3 83 190-272 38-125 (139)
220 2dis_A Unnamed protein product 99.4 2.9E-13 1E-17 124.2 10.8 82 192-273 6-96 (109)
221 1h2v_Z 20 kDa nuclear CAP bind 99.4 2E-13 6.9E-18 133.7 10.4 82 277-358 37-123 (156)
222 1p1t_A Cleavage stimulation fa 99.4 5.9E-14 2E-18 127.7 6.1 82 277-358 6-92 (104)
223 2cqh_A IGF-II mRNA-binding pro 99.4 6.6E-14 2.3E-18 125.0 6.2 78 278-357 7-86 (93)
224 1x5p_A Negative elongation fac 99.4 3.3E-13 1.1E-17 121.7 10.9 78 277-357 13-90 (97)
225 2cpx_A Hypothetical protein FL 99.4 2.3E-13 8E-18 126.1 10.0 83 190-272 21-108 (115)
226 2cqh_A IGF-II mRNA-binding pro 99.4 1.4E-13 4.7E-18 123.0 8.1 80 191-272 5-86 (93)
227 2jvr_A Nucleolar protein 3; RN 99.4 1.5E-13 5.3E-18 128.2 8.7 78 191-268 25-104 (111)
228 1x4f_A Matrin 3; structural ge 99.4 9.1E-14 3.1E-18 130.0 7.0 79 277-356 23-104 (112)
229 2kvi_A Nuclear polyadenylated 99.4 9.4E-14 3.2E-18 125.2 6.8 78 277-357 8-86 (96)
230 2m2b_A RNA-binding protein 10; 99.4 1.8E-13 6.3E-18 130.5 9.2 84 187-271 16-110 (131)
231 3ulh_A THO complex subunit 4; 99.4 3.2E-13 1.1E-17 123.6 10.3 78 190-267 25-106 (107)
232 3zzy_A Polypyrimidine tract-bi 99.4 1.6E-13 5.4E-18 131.5 8.5 77 280-356 29-108 (130)
233 2nlw_A Eukaryotic translation 99.4 3.7E-13 1.3E-17 123.5 10.4 80 190-269 11-100 (105)
234 1x5p_A Negative elongation fac 99.4 8.4E-13 2.9E-17 119.0 12.5 79 190-271 11-89 (97)
235 2div_A TRNA selenocysteine ass 99.4 1.3E-13 4.4E-18 124.4 7.2 80 277-356 7-96 (99)
236 2dh8_A DAZ-associated protein 99.4 1.9E-13 6.4E-18 124.8 8.3 81 276-357 13-98 (105)
237 1wf1_A RNA-binding protein RAL 99.4 3.9E-13 1.3E-17 124.0 10.6 77 191-270 24-101 (110)
238 2fc8_A NCL protein; structure 99.4 3.2E-13 1.1E-17 122.4 9.8 83 190-272 11-95 (102)
239 1nu4_A U1A RNA binding domain; 99.4 1.7E-13 5.9E-18 123.0 7.8 80 278-357 7-92 (97)
240 3s7r_A Heterogeneous nuclear r 99.4 3.2E-13 1.1E-17 119.0 9.4 76 190-266 7-87 (87)
241 2cpx_A Hypothetical protein FL 99.4 1.7E-13 5.8E-18 127.0 8.0 82 277-358 23-109 (115)
242 2cqp_A RNA-binding protein 12; 99.4 1.6E-13 5.4E-18 123.6 7.6 78 277-354 13-95 (98)
243 3ulh_A THO complex subunit 4; 99.4 3.1E-13 1.1E-17 123.6 9.6 76 277-352 27-106 (107)
244 3ucg_A Polyadenylate-binding p 99.4 2.9E-13 9.9E-18 119.4 9.1 76 193-269 5-85 (89)
245 1h2v_Z 20 kDa nuclear CAP bind 99.4 5.6E-13 1.9E-17 130.5 12.1 81 191-271 36-121 (156)
246 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.9E-13 6.5E-18 124.2 8.0 79 190-270 15-99 (100)
247 2rs2_A Musashi-1, RNA-binding 99.4 2.6E-13 9E-18 125.5 9.1 81 276-357 22-107 (109)
248 1x4e_A RNA binding motif, sing 99.4 1.7E-13 5.8E-18 120.2 7.3 76 192-267 3-83 (85)
249 1x4b_A Heterogeneous nuclear r 99.4 1.5E-13 5.2E-18 127.8 7.4 81 276-357 24-109 (116)
250 3n9u_C Cleavage and polyadenyl 99.4 1.5E-13 5.2E-18 135.6 7.4 79 278-356 54-139 (156)
251 2kt5_A RNA and export factor-b 99.4 5.4E-13 1.8E-17 125.7 10.8 79 277-355 33-115 (124)
252 2e44_A Insulin-like growth fac 99.4 4.8E-13 1.6E-17 120.0 9.9 78 278-355 14-93 (96)
253 1x4e_A RNA binding motif, sing 99.4 8.9E-14 3E-18 122.0 5.0 76 278-353 4-84 (85)
254 1s79_A Lupus LA protein; RRM, 99.4 2.1E-13 7.3E-18 125.3 7.8 77 276-353 8-88 (103)
255 2ek1_A RNA-binding protein 12; 99.4 1.1E-13 3.8E-18 123.7 5.7 76 278-353 14-94 (95)
256 3s7r_A Heterogeneous nuclear r 99.4 3.8E-13 1.3E-17 118.5 9.0 75 276-351 8-87 (87)
257 2dis_A Unnamed protein product 99.4 2.4E-13 8.3E-18 124.8 8.1 80 278-357 7-95 (109)
258 1wg1_A KIAA1579 protein, homol 99.4 2.1E-13 7.3E-18 120.8 7.4 76 278-355 4-79 (88)
259 2lea_A Serine/arginine-rich sp 99.4 1.9E-13 6.5E-18 131.5 7.5 85 188-272 41-130 (135)
260 1s79_A Lupus LA protein; RRM, 99.4 3.1E-13 1.1E-17 124.2 8.5 76 191-267 8-87 (103)
261 1x5o_A RNA binding motif, sing 99.4 8.8E-13 3E-17 122.1 11.6 80 190-269 21-112 (114)
262 2cqp_A RNA-binding protein 12; 99.4 2.4E-13 8.4E-18 122.4 7.6 79 190-268 11-94 (98)
263 1wg1_A KIAA1579 protein, homol 99.4 2.5E-13 8.7E-18 120.3 7.6 75 192-268 3-77 (88)
264 2krb_A Eukaryotic translation 99.4 3E-13 1E-17 117.9 7.9 70 194-263 1-80 (81)
265 2cqg_A TDP-43, TAR DNA-binding 99.4 1.1E-12 3.7E-17 119.3 11.9 82 189-272 10-96 (103)
266 2ek1_A RNA-binding protein 12; 99.4 1.5E-13 5.3E-18 122.8 5.9 77 191-267 12-93 (95)
267 2m2b_A RNA-binding protein 10; 99.4 1.2E-13 4.2E-18 131.7 5.5 80 276-356 20-110 (131)
268 2kt5_A RNA and export factor-b 99.4 8.4E-13 2.9E-17 124.3 11.2 82 190-271 31-116 (124)
269 3n9u_C Cleavage and polyadenyl 99.4 3.5E-13 1.2E-17 133.0 8.9 78 192-269 53-137 (156)
270 2mss_A Protein (musashi1); RNA 99.4 1.5E-13 5.2E-18 117.6 5.5 70 281-351 1-75 (75)
271 2ki2_A SS-DNA binding protein 99.4 9.7E-14 3.3E-18 123.0 4.3 76 280-356 2-82 (90)
272 2cq4_A RNA binding motif prote 99.4 1.5E-13 5.3E-18 127.4 5.8 78 191-269 22-104 (114)
273 2cpi_A CCR4-NOT transcription 99.4 4.1E-13 1.4E-17 124.4 8.6 80 191-270 12-102 (111)
274 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1E-12 3.5E-17 125.6 11.5 78 189-266 58-140 (140)
275 2dgw_A Probable RNA-binding pr 99.4 5.4E-13 1.9E-17 118.6 8.9 77 277-355 8-88 (91)
276 2dgw_A Probable RNA-binding pr 99.4 8.2E-13 2.8E-17 117.4 9.9 78 191-270 7-88 (91)
277 2cqg_A TDP-43, TAR DNA-binding 99.4 1E-12 3.5E-17 119.5 10.7 79 276-356 12-95 (103)
278 1x5o_A RNA binding motif, sing 99.4 8.5E-13 2.9E-17 122.2 10.3 78 277-354 23-112 (114)
279 2krb_A Eukaryotic translation 99.4 1.7E-13 5.8E-18 119.4 5.3 69 280-348 2-80 (81)
280 2cq2_A Hypothetical protein LO 99.4 7.9E-13 2.7E-17 123.9 10.1 77 191-268 22-105 (114)
281 2e44_A Insulin-like growth fac 99.4 1.3E-12 4.6E-17 117.0 11.1 79 192-270 13-93 (96)
282 3zzy_A Polypyrimidine tract-bi 99.4 1E-12 3.5E-17 125.9 10.9 78 193-270 27-107 (130)
283 1wg5_A Heterogeneous nuclear r 99.4 1.2E-12 3.9E-17 119.9 10.8 80 190-270 11-95 (104)
284 2rs2_A Musashi-1, RNA-binding 99.4 6.1E-13 2.1E-17 123.0 9.0 81 190-271 21-106 (109)
285 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 9.1E-13 3.1E-17 125.9 10.5 75 277-351 61-140 (140)
286 1sjr_A Polypyrimidine tract-bi 99.4 3.8E-13 1.3E-17 133.6 8.1 77 279-355 46-125 (164)
287 2jwn_A Embryonic polyadenylate 99.4 5.1E-13 1.8E-17 125.6 8.6 77 278-355 35-116 (124)
288 2e5i_A Heterogeneous nuclear r 99.4 6.6E-13 2.3E-17 126.3 9.1 74 281-355 27-103 (124)
289 2ki2_A SS-DNA binding protein 99.4 1.7E-13 5.8E-18 121.5 4.7 76 195-271 2-82 (90)
290 2mss_A Protein (musashi1); RNA 99.4 3.6E-13 1.2E-17 115.2 6.6 70 196-266 1-75 (75)
291 1wg5_A Heterogeneous nuclear r 99.4 6.5E-13 2.2E-17 121.6 8.6 78 277-355 13-95 (104)
292 1fj7_A Nucleolin RBD1, protein 99.4 1.6E-13 5.3E-18 124.5 4.4 80 278-358 16-99 (101)
293 2e5g_A U6 snRNA-specific termi 99.4 2.1E-12 7.1E-17 115.7 11.6 79 192-271 6-84 (94)
294 3d2w_A TAR DNA-binding protein 99.4 8.6E-13 2.9E-17 117.8 9.1 76 277-356 9-86 (89)
295 3beg_B Splicing factor, argini 99.4 7.4E-13 2.5E-17 123.6 8.7 76 278-355 15-95 (115)
296 1fj7_A Nucleolin RBD1, protein 99.4 3.4E-13 1.2E-17 122.2 5.7 80 191-271 14-97 (101)
297 1sjr_A Polypyrimidine tract-bi 99.4 2.1E-12 7.3E-17 128.2 11.8 79 192-270 44-125 (164)
298 2e5g_A U6 snRNA-specific termi 99.4 1E-12 3.5E-17 117.7 8.6 78 278-356 7-84 (94)
299 1uaw_A Mouse-musashi-1; RNP-ty 99.4 3.1E-13 1.1E-17 116.0 4.9 71 280-351 1-76 (77)
300 2jwn_A Embryonic polyadenylate 99.4 1.4E-12 4.9E-17 122.5 9.9 77 193-270 35-116 (124)
301 3d2w_A TAR DNA-binding protein 99.4 1.6E-12 5.5E-17 116.0 9.6 76 191-270 8-85 (89)
302 1uaw_A Mouse-musashi-1; RNP-ty 99.4 3.3E-13 1.1E-17 115.8 5.0 71 195-266 1-76 (77)
303 1rk8_A CG8781-PA, CG8781-PA pr 99.4 1.5E-12 5E-17 129.1 10.1 84 188-271 66-154 (165)
304 1x4b_A Heterogeneous nuclear r 99.4 1E-12 3.5E-17 122.2 8.4 81 191-272 24-109 (116)
305 2cq2_A Hypothetical protein LO 99.4 9.9E-13 3.4E-17 123.3 8.2 76 278-354 24-106 (114)
306 3egn_A RNA-binding protein 40; 99.4 1.9E-12 6.4E-17 125.0 10.3 80 191-270 42-131 (143)
307 2cpy_A RNA-binding protein 12; 99.4 4.2E-13 1.4E-17 124.9 5.5 80 277-357 13-97 (114)
308 3egn_A RNA-binding protein 40; 99.4 1.2E-12 4.2E-17 126.3 9.0 80 278-357 44-133 (143)
309 2diu_A KIAA0430 protein; struc 99.3 2.5E-12 8.6E-17 116.0 9.7 74 193-271 7-86 (96)
310 2hgl_A HNRPF protein, heteroge 99.3 4.7E-13 1.6E-17 129.3 5.3 77 278-355 43-126 (136)
311 2diu_A KIAA0430 protein; struc 99.3 1.4E-12 4.9E-17 117.6 8.1 72 280-356 10-86 (96)
312 2e5i_A Heterogeneous nuclear r 99.3 4E-12 1.4E-16 120.9 10.9 74 196-270 27-103 (124)
313 2cpy_A RNA-binding protein 12; 99.3 1.1E-12 3.7E-17 122.1 6.8 79 190-269 11-94 (114)
314 2db1_A Heterogeneous nuclear r 99.3 7.6E-13 2.6E-17 124.2 5.7 76 278-354 16-98 (118)
315 1wf0_A TDP-43, TAR DNA-binding 99.3 1.1E-12 3.8E-17 116.0 6.5 79 192-272 3-81 (88)
316 2lcw_A RNA-binding protein FUS 99.0 1.1E-13 3.9E-18 128.8 0.0 81 277-357 5-98 (116)
317 2dnn_A RNA-binding protein 12; 99.3 1.8E-12 6.2E-17 120.5 8.0 74 278-353 15-92 (109)
318 1wez_A HnRNP H', FTP-3, hetero 99.3 1.2E-12 4.2E-17 119.8 6.8 78 277-356 13-94 (102)
319 3beg_B Splicing factor, argini 99.3 2.3E-12 7.8E-17 120.3 8.6 77 191-269 13-94 (115)
320 2hgn_A Heterogeneous nuclear r 99.3 4.1E-13 1.4E-17 130.2 3.4 120 232-356 2-125 (139)
321 1wez_A HnRNP H', FTP-3, hetero 99.3 2.8E-12 9.5E-17 117.4 8.5 79 190-270 11-93 (102)
322 2xs2_A Deleted in azoospermia- 99.3 9.3E-13 3.2E-17 119.6 5.2 80 190-271 5-88 (102)
323 1wf0_A TDP-43, TAR DNA-binding 99.3 1E-12 3.5E-17 116.2 5.1 78 278-357 4-81 (88)
324 1wel_A RNA-binding protein 12; 99.3 4.9E-13 1.7E-17 126.2 3.0 77 278-355 24-105 (124)
325 2lcw_A RNA-binding protein FUS 99.0 1.9E-13 6.4E-18 127.4 0.0 82 191-272 4-98 (116)
326 1wel_A RNA-binding protein 12; 99.3 8.9E-13 3E-17 124.4 4.7 77 191-268 22-103 (124)
327 2lmi_A GRSF-1, G-rich sequence 99.3 7.8E-13 2.7E-17 121.7 4.2 78 277-355 9-93 (107)
328 3q2s_C Cleavage and polyadenyl 99.3 1.1E-12 3.9E-17 137.2 5.9 78 278-355 67-151 (229)
329 1iqt_A AUF1, heterogeneous nuc 99.3 1.3E-12 4.4E-17 111.6 5.2 70 196-266 1-75 (75)
330 2hzc_A Splicing factor U2AF 65 99.3 3.9E-12 1.3E-16 111.7 8.3 72 192-265 4-86 (87)
331 2bz2_A Negative elongation fac 99.3 2.5E-12 8.6E-17 121.5 7.5 78 277-357 37-114 (121)
332 2db1_A Heterogeneous nuclear r 99.3 1.4E-12 4.9E-17 122.3 5.7 77 191-268 14-97 (118)
333 2hzc_A Splicing factor U2AF 65 99.3 4.1E-12 1.4E-16 111.5 8.1 71 278-350 5-86 (87)
334 1iqt_A AUF1, heterogeneous nuc 99.3 7.5E-13 2.6E-17 113.1 3.2 70 281-351 1-75 (75)
335 2voo_A Lupus LA protein; RNA-b 99.3 6.3E-12 2.2E-16 128.2 10.5 114 240-354 63-187 (193)
336 3q2s_C Cleavage and polyadenyl 99.3 2.9E-12 9.8E-17 134.2 7.8 76 193-268 67-149 (229)
337 2xs2_A Deleted in azoospermia- 99.3 1.6E-12 5.6E-17 117.9 5.1 79 276-356 6-88 (102)
338 2f3j_A RNA and export factor b 99.3 6.1E-12 2.1E-16 126.6 9.8 80 190-269 84-167 (177)
339 2bz2_A Negative elongation fac 99.3 6.3E-12 2.1E-16 118.7 9.2 78 191-271 36-113 (121)
340 2hgl_A HNRPF protein, heteroge 99.3 2.2E-12 7.5E-17 124.6 6.1 77 191-268 41-124 (136)
341 2lmi_A GRSF-1, G-rich sequence 99.3 2.3E-12 8E-17 118.5 5.5 77 191-268 8-91 (107)
342 2f3j_A RNA and export factor b 99.3 6.6E-12 2.3E-16 126.3 8.2 78 278-355 87-168 (177)
343 3u1l_A PRE-mRNA-splicing facto 99.2 8.8E-12 3E-16 131.2 8.9 79 277-356 132-231 (240)
344 2dnn_A RNA-binding protein 12; 99.2 5.4E-12 1.8E-16 117.3 6.2 75 192-268 14-92 (109)
345 2dnl_A Cytoplasmic polyadenyla 99.2 1.8E-11 6.2E-16 113.8 9.2 72 192-266 6-85 (114)
346 3u1l_A PRE-mRNA-splicing facto 99.2 1.3E-11 4.6E-16 129.9 9.2 81 191-272 131-232 (240)
347 2hgn_A Heterogeneous nuclear r 99.2 4.5E-12 1.5E-16 122.9 5.1 79 190-270 42-124 (139)
348 2hgm_A HNRPF protein, heteroge 99.2 1.2E-11 4.2E-16 117.9 7.7 77 190-268 38-120 (126)
349 2dnl_A Cytoplasmic polyadenyla 99.2 1.1E-11 3.6E-16 115.4 7.1 78 278-358 7-92 (114)
350 2hgm_A HNRPF protein, heteroge 99.2 5.4E-12 1.8E-16 120.4 5.2 76 278-355 41-122 (126)
351 2pe8_A Splicing factor 45; RRM 99.2 2.7E-11 9.3E-16 111.7 9.6 76 278-353 7-93 (105)
352 2dha_A FLJ20171 protein; RRM d 99.2 2.3E-12 8E-17 122.3 2.3 77 278-355 22-106 (123)
353 2dit_A HIV TAT specific factor 99.2 3.4E-11 1.2E-15 111.7 10.2 80 277-356 13-104 (112)
354 2dit_A HIV TAT specific factor 99.2 6.2E-11 2.1E-15 109.9 11.6 82 190-271 11-104 (112)
355 2dha_A FLJ20171 protein; RRM d 99.2 7.4E-12 2.5E-16 118.9 4.6 76 192-268 21-104 (123)
356 3pgw_S U1-70K; protein-RNA com 99.2 3.7E-11 1.3E-15 137.1 10.2 80 191-270 99-183 (437)
357 2pe8_A Splicing factor 45; RRM 99.2 7.7E-11 2.6E-15 108.7 10.2 77 192-268 6-93 (105)
358 2j8a_A Histone-lysine N-methyl 99.1 3.1E-11 1.1E-15 114.8 5.5 77 280-356 3-98 (136)
359 3v4m_A Splicing factor U2AF 65 99.1 2.1E-10 7.2E-15 105.7 9.2 77 278-354 4-97 (105)
360 2voo_A Lupus LA protein; RNA-b 99.1 2.2E-10 7.7E-15 116.7 9.8 75 193-268 108-186 (193)
361 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.7E-10 5.8E-15 105.6 7.2 67 288-356 26-92 (100)
362 2j8a_A Histone-lysine N-methyl 99.1 9.5E-11 3.2E-15 111.5 5.3 73 195-267 3-94 (136)
363 3v4m_A Splicing factor U2AF 65 99.0 4.2E-10 1.4E-14 103.7 9.1 77 191-267 2-95 (105)
364 2d9o_A DNAJ (HSP40) homolog, s 99.0 1.4E-09 4.8E-14 99.5 11.9 75 194-270 10-91 (100)
365 1jmt_A Splicing factor U2AF 35 99.0 1.6E-10 5.5E-15 106.3 5.4 68 284-351 20-103 (104)
366 3tht_A Alkylated DNA repair pr 99.0 5.7E-10 2E-14 123.3 9.7 75 191-266 15-96 (345)
367 3tht_A Alkylated DNA repair pr 99.0 7.3E-10 2.5E-14 122.4 8.9 75 277-352 16-97 (345)
368 3ue2_A Poly(U)-binding-splicin 99.0 9.8E-10 3.4E-14 103.5 7.8 76 278-353 19-108 (118)
369 3s6e_A RNA-binding protein 39; 98.9 1.9E-09 6.3E-14 101.0 8.4 76 278-353 6-92 (114)
370 1jmt_A Splicing factor U2AF 35 98.9 7.9E-10 2.7E-14 101.7 4.4 68 199-266 20-103 (104)
371 3ue2_A Poly(U)-binding-splicin 98.9 3.7E-09 1.3E-13 99.6 8.7 75 193-267 19-107 (118)
372 3s6e_A RNA-binding protein 39; 98.8 7.5E-09 2.6E-13 96.9 9.1 76 192-267 5-91 (114)
373 1uw4_A UPF3X; nonsense mediate 98.7 2.7E-08 9.4E-13 89.3 9.0 84 713-798 2-88 (91)
374 2dnr_A Synaptojanin-1; RRM dom 98.7 4.1E-08 1.4E-12 87.8 8.5 74 278-355 6-87 (91)
375 2l08_A Regulator of nonsense t 98.6 3.1E-08 1E-12 89.6 4.3 84 713-798 10-96 (97)
376 1owx_A Lupus LA protein, SS-B, 98.6 1.8E-07 6E-12 88.4 9.2 85 278-364 17-105 (121)
377 1owx_A Lupus LA protein, SS-B, 98.4 7.3E-07 2.5E-11 84.2 10.0 75 191-266 15-93 (121)
378 1ufw_A Synaptojanin 2; RNP dom 98.4 1.8E-07 6E-12 84.2 5.0 73 277-353 13-94 (95)
379 2dnr_A Synaptojanin-1; RRM dom 98.3 1.1E-06 3.7E-11 78.6 8.1 74 192-269 5-86 (91)
380 3dxb_A Thioredoxin N-terminall 98.3 7.6E-07 2.6E-11 91.7 7.3 63 291-353 141-212 (222)
381 3dxb_A Thioredoxin N-terminall 98.1 6E-06 2E-10 85.0 8.2 62 206-267 141-211 (222)
382 1ufw_A Synaptojanin 2; RNP dom 98.0 4.8E-06 1.6E-10 74.9 4.7 72 192-267 13-93 (95)
383 2l9w_A U4/U6 snRNA-associated- 97.9 1.2E-05 4.1E-10 73.8 6.8 72 278-350 20-96 (117)
384 2l9w_A U4/U6 snRNA-associated- 97.6 0.0001 3.5E-09 67.8 7.4 72 192-264 19-95 (117)
385 2dhx_A Poly (ADP-ribose) polym 97.6 0.00044 1.5E-08 63.0 11.0 89 193-293 7-100 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.4 0.0005 1.7E-08 62.6 8.2 84 279-366 8-96 (104)
387 1wey_A Calcipressin 1; structu 96.8 0.0016 5.5E-08 59.5 5.9 76 279-355 5-85 (104)
388 1wey_A Calcipressin 1; structu 96.3 0.0048 1.7E-07 56.4 5.6 75 194-269 5-84 (104)
389 1wwh_A Nucleoporin 35, nucleop 95.9 0.023 8E-07 53.1 8.4 74 277-353 22-96 (119)
390 1uw4_A UPF3X; nonsense mediate 95.8 0.033 1.1E-06 49.8 8.7 73 195-267 2-86 (91)
391 1wwh_A Nucleoporin 35, nucleop 94.8 0.07 2.4E-06 49.9 7.6 72 192-266 22-94 (119)
392 1whv_A Poly(A)-specific ribonu 94.2 0.042 1.4E-06 49.6 4.5 55 194-252 16-70 (100)
393 1whv_A Poly(A)-specific ribonu 93.7 0.1 3.4E-06 47.1 6.0 55 279-337 16-70 (100)
394 3ctr_A Poly(A)-specific ribonu 93.5 0.057 1.9E-06 48.9 4.1 54 195-252 7-60 (101)
395 3pq1_A Poly(A) RNA polymerase; 93.2 0.036 1.2E-06 63.3 2.9 56 193-249 52-107 (464)
396 3p3d_A Nucleoporin 53; structu 92.9 0.077 2.6E-06 50.4 4.2 73 279-353 7-98 (132)
397 2l08_A Regulator of nonsense t 92.3 0.28 9.7E-06 44.2 6.9 64 280-343 10-80 (97)
398 3ctr_A Poly(A)-specific ribonu 91.7 0.11 3.7E-06 47.0 3.4 54 280-337 7-60 (101)
399 3pq1_A Poly(A) RNA polymerase; 91.0 0.078 2.7E-06 60.6 2.3 56 278-334 52-107 (464)
400 3p3d_A Nucleoporin 53; structu 89.5 0.31 1.1E-05 46.2 4.6 72 193-266 6-96 (132)
401 3d45_A Poly(A)-specific ribonu 72.8 7.7 0.00026 44.7 8.6 56 194-253 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 56.3 20 0.00068 41.3 7.8 55 279-337 440-494 (507)
403 4eyt_A Telomerase associated p 23.4 3.2E+02 0.011 24.0 8.1 78 279-359 12-96 (129)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=1.4e-29 Score=261.27 Aligned_cols=166 Identities=19% Similarity=0.352 Sum_probs=146.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
..+.++|||+|||+++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 356799999999999999999999999999999974 467899999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC---CCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 002871 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (872)
Q Consensus 266 a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~---~~skGfaFVeF~~~e~A~kAl~~LnG~~l~ 342 (872)
+...... ......+|||+||++++++++|+++|++||.|++|++. +.++|||||+|.+.++|++|++.|||..|+
T Consensus 92 ~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 92 SQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCCTHH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccccccc--cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 8644321 22245689999999999999999999999999999763 446899999999999999999999999999
Q ss_pred CcEEEEEecCCCcccc
Q 002871 343 GKRIKLEPSRPGGARR 358 (872)
Q Consensus 343 Gr~L~V~~s~p~~~r~ 358 (872)
|++|+|.+++++..+.
T Consensus 170 g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 170 DRKVFVGRFKSRKERE 185 (213)
T ss_dssp TEECEEEECCCHHHHH
T ss_pred CEEEEEEEcCCCcccc
Confidence 9999999999876544
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=7.1e-29 Score=265.62 Aligned_cols=235 Identities=18% Similarity=0.224 Sum_probs=191.7
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCC
Q 002871 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNG 179 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~ 179 (872)
++||.++.+++-+.. +|+.++ +.+ .+-...|.++|+|+..+.+..++..++..... +..+ .
T Consensus 27 V~nLp~~~te~~l~~---------~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~i-----~-- 88 (284)
T 3smz_A 27 IRGLPGDVTNQEVHD---------LLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLR-EREL-----S-- 88 (284)
T ss_dssp EECCCTTCCHHHHHH---------HTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET-TEEC-----E--
T ss_pred EeCCCCCCCHHHHHH---------HHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeC-CeEE-----E--
Confidence 899998865555554 566666 566 55556778999999999999998876622210 0011 0
Q ss_pred CCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCc
Q 002871 180 VGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNK 254 (872)
Q Consensus 180 ~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~ 254 (872)
+. -..+.++|||+|||+++++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|++.
T Consensus 89 ---v~-----~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~ 160 (284)
T 3smz_A 89 ---VQ-----LQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK 160 (284)
T ss_dssp ---EE-----ECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ---EE-----ecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 00 0234689999999999999999999999999998873 4568999999999999999999999999
Q ss_pred ccccceeeeeecCCCCCCCCccccccceeeeccCCcc-chhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHH
Q 002871 255 PLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASV-SNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAA 329 (872)
Q Consensus 255 ~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~~-TeedL~e~Fs~fG~V~~vri----~~~skGfaFVeF~~~e~A 329 (872)
.+.|++|.|.|+.++... .......+|||+|||.++ ++++|+++|++||.|..|++ .+.++|+|||+|.+.++|
T Consensus 161 ~~~g~~i~v~~a~~~~~~-~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 239 (284)
T 3smz_A 161 PLGPRTLYVHWTDAGQLT-PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMA 239 (284)
T ss_dssp EETTEECEEEECCGGGCC-TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHH
T ss_pred EeCCcEEEEEECCCCCCC-cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHH
Confidence 999999999999776543 233456789999999995 99999999999999999875 345689999999999999
Q ss_pred HHHHHHhCCceeCCcEEEEEecCCCcccchhhh
Q 002871 330 EAALRALNRSDINGKRIKLEPSRPGGARRNLMQ 362 (872)
Q Consensus 330 ~kAl~~LnG~~l~Gr~L~V~~s~p~~~r~~~~~ 362 (872)
.+|++.|||..|+|++|+|.|+.++..++..+.
T Consensus 240 ~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~ 272 (284)
T 3smz_A 240 EEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLA 272 (284)
T ss_dssp HHHHHHHTTCEETTEECEEEECCSSSCHHHHHH
T ss_pred HHHHHHhCCCccCCeEEEEEEecCCCcccchhh
Confidence 999999999999999999999999987765443
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.8e-28 Score=238.05 Aligned_cols=157 Identities=20% Similarity=0.361 Sum_probs=142.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCC
Q 002871 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 270 (872)
|+|||+|||.++++++|+++|++||+|.+|++ .++++|||||+|.+.++|++|++.|++..+.|++|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999984 35678999999999999999999999999999999999987654
Q ss_pred CCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcE
Q 002871 271 NPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR 345 (872)
Q Consensus 271 ~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~ 345 (872)
.. ......+|||+|||..+++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|||..++|++
T Consensus 81 ~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 81 QS--SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CC--CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CC--CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 32 2345679999999999999999999999999999976 3456899999999999999999999999999999
Q ss_pred EEEEecCC
Q 002871 346 IKLEPSRP 353 (872)
Q Consensus 346 L~V~~s~p 353 (872)
|+|.|+++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999864
No 4
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=4.8e-28 Score=260.18 Aligned_cols=226 Identities=17% Similarity=0.220 Sum_probs=179.6
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccC----CCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccc
Q 002871 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFD----SGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYP 175 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf~----s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~ 175 (872)
++||.+..+++-+.. +|+.++.|.+ .+.. +.|.++|+|...+.+..++. ++.. .-.+. .
T Consensus 46 V~nLp~~~t~~~l~~---------~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~---~~~g~---~ 109 (292)
T 2ghp_A 46 VKNLPKSYNQNKVYK---------YFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHK---VVGQN---E 109 (292)
T ss_dssp EEEECTTCCHHHHHH---------HHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTC---EETTE---E
T ss_pred EeCCCCCCCHHHHHH---------HHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCc---EeCCc---E
Confidence 899999865555554 5666666776 4433 35668999999999999984 3311 00111 0
Q ss_pred cCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeC----CCcccEEEEEeCCHHHHHHHHHH
Q 002871 176 ISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYG-DIRTLYTA----CKHRGFVMISYYDIRAARTAMRA 250 (872)
Q Consensus 176 l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG-~I~~v~~~----~ksrG~AFVeF~d~e~A~~Ai~~ 250 (872)
+. + .....++|||+|||+++++++|+++|++|| .|..|++. +.++|||||+|.+.++|.+|+..
T Consensus 110 i~-----v------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~ 178 (292)
T 2ghp_A 110 II-----V------SHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 178 (292)
T ss_dssp CE-----E------EECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHH
T ss_pred EE-----E------EECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 00 0 012479999999999999999999999999 99999742 45799999999999999999999
Q ss_pred hcCcccccceeeeeecCCCCCCCC---ccccccceeeeccCCc-cchhhHhhhhcccCCeEEEEeC------CCCccEEE
Q 002871 251 LQNKPLRRRKLDIHFSIPKDNPSE---KDVNQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRET------PHKRHHKF 320 (872)
Q Consensus 251 Lng~~l~gr~L~V~~a~pk~~~~~---~~~~~~tLfV~NLp~~-~TeedL~e~Fs~fG~V~~vri~------~~skGfaF 320 (872)
|++..+.|++|.|.|+.++..... ......+|||+|||.. +++++|+++|++||.|..|++. +.++||||
T Consensus 179 l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~af 258 (292)
T 2ghp_A 179 LNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAF 258 (292)
T ss_dssp HTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEE
T ss_pred hCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEE
Confidence 999999999999999987654322 2335679999999999 9999999999999999999873 56689999
Q ss_pred EEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002871 321 IEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 321 VeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
|+|.+.++|.+|+ .|||..|+|++|+|.|++++
T Consensus 259 V~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 259 MVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999999999 99999999999999999886
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=9.3e-28 Score=235.48 Aligned_cols=155 Identities=23% Similarity=0.432 Sum_probs=141.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
++++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5799999999999999999999999999999973 45578999999999999999999999999999999999997
Q ss_pred CCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 002871 268 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (872)
Q Consensus 268 pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~ 342 (872)
++.. .....+|||+|||..+++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSS----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 6543 234678999999999999999999999999999976 3456799999999999999999999999998
Q ss_pred C--cEEEEEec
Q 002871 343 G--KRIKLEPS 351 (872)
Q Consensus 343 G--r~L~V~~s 351 (872)
| ++|+|+||
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 8 99999986
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=1.4e-27 Score=233.36 Aligned_cols=155 Identities=25% Similarity=0.435 Sum_probs=140.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
++++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 4689999999999999999999999999999874 56678999999999999999999999999999999999997
Q ss_pred CCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 002871 268 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (872)
Q Consensus 268 pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~ 342 (872)
+... .....+|||+|||..+++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|||..+.
T Consensus 81 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 6432 335678999999999999999999999999999976 3446899999999999999999999999999
Q ss_pred CcE--EEEEec
Q 002871 343 GKR--IKLEPS 351 (872)
Q Consensus 343 Gr~--L~V~~s 351 (872)
|+. |+|.||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 965 888875
No 7
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=2.6e-27 Score=253.45 Aligned_cols=179 Identities=18% Similarity=0.311 Sum_probs=163.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCC
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 271 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 271 (872)
.++++|||+|||+++|+++|+++|++|| |..|.+ ++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 3579999999999999999999999999 999976 6889999999999999999999999999999999999964
Q ss_pred CCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEE
Q 002871 272 PSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 346 (872)
Q Consensus 272 ~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L 346 (872)
...+|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|+|..++|++|
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 2468999999999999999999999999999875 34568999999999999999999999999999999
Q ss_pred EEEecCCCcc-------cchhhhcCChhc-cHHHHHHhhhccCC
Q 002871 347 KLEPSRPGGA-------RRNLMQQLNQEL-EQDEARGFRHQVGS 382 (872)
Q Consensus 347 ~V~~s~p~~~-------r~~~~~ql~~~~-tq~~l~~~f~~~Gs 382 (872)
.|.++.++.. +..++.+++..+ ++++++.+|..||.
T Consensus 168 ~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~ 211 (284)
T 3smz_A 168 YVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS 211 (284)
T ss_dssp EEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC
T ss_pred EEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC
Confidence 9999987653 334889999995 89999999999884
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=1.6e-27 Score=239.88 Aligned_cols=169 Identities=20% Similarity=0.371 Sum_probs=140.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002871 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 188 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
+....+.++|||+|||+++|+++|+++|++||+|..|++ ++.++|||||+|.+.++|++|++ +++..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEee
Confidence 344567899999999999999999999999999999874 35679999999999999999998 499999999999
Q ss_pred eeecCCCCCCCC--ccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHH
Q 002871 263 IHFSIPKDNPSE--KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRA 335 (872)
Q Consensus 263 V~~a~pk~~~~~--~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~ 335 (872)
|.++.++..... ......+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 999876543321 2234579999999999999999999999999999976 355689999999999999999985
Q ss_pred hCCceeCCcEEEEEecCCCcccc
Q 002871 336 LNRSDINGKRIKLEPSRPGGARR 358 (872)
Q Consensus 336 LnG~~l~Gr~L~V~~s~p~~~r~ 358 (872)
+|..|+|+.|.|.++.++....
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp -SCCEETTEECEEEECC------
T ss_pred -CCcEECCEEEEEEecCChhHhc
Confidence 8999999999999999876543
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=1.6e-27 Score=243.65 Aligned_cols=164 Identities=20% Similarity=0.374 Sum_probs=144.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4689999999999999999999999999999985 45689999999999999999999999999999999999876
Q ss_pred CCCCCC-------CccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHH
Q 002871 268 PKDNPS-------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRA 335 (872)
Q Consensus 268 pk~~~~-------~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~ 335 (872)
...... .......+|||+||+.++++++|+++|++||.|..|++. ++++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 543211 012245799999999999999999999999999999763 45689999999999999999999
Q ss_pred hCCceeCCcEEEEEecCCCcc
Q 002871 336 LNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 336 LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
|||..|+|++|+|.++.+...
T Consensus 187 l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCSS
T ss_pred ccCCEeCCcEEEEEEecCCCC
Confidence 999999999999999987643
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=5.1e-28 Score=239.90 Aligned_cols=162 Identities=19% Similarity=0.279 Sum_probs=144.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE----EeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTL----YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v----~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
...+.++|||+|||.++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++ |++..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 35678999999999999999999999999864331 1457789999999999999999995 999999999999999
Q ss_pred cCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcE
Q 002871 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR 345 (872)
Q Consensus 266 a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~ 345 (872)
+.++... ......+|||+|||.++++++|+++|++||.|..+..++.++|||||+|.+.++|.+|++.|||..|+|++
T Consensus 88 ~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 88 PKGRDSK--KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp CCCSSCS--TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred CCCcccc--ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 9765432 33456899999999999999999999999999998556778999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 002871 346 IKLEPSRPG 354 (872)
Q Consensus 346 L~V~~s~p~ 354 (872)
|+|+|++++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999999876
No 11
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=3.3e-27 Score=246.22 Aligned_cols=164 Identities=24% Similarity=0.332 Sum_probs=147.3
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002871 191 EHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 191 e~~srtLfV~NLP~-~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
..++++|||+|||+ ++++++|+++|++||.|.+|++....+|||||+|.+.++|++|++.|++..+.|++|.|.++.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 45689999999999 99999999999999999999976666899999999999999999999999999999999998754
Q ss_pred CCCCCc-------------------------------cccccceeeeccCCccchhhHhhhhcccC-CeEEEEeCCCCcc
Q 002871 270 DNPSEK-------------------------------DVNQGTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRETPHKRH 317 (872)
Q Consensus 270 ~~~~~~-------------------------------~~~~~tLfV~NLp~~~TeedL~e~Fs~fG-~V~~vri~~~skG 317 (872)
.....+ .....+|||+|||..+++++|+++|++|| .|..|++.++.+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g 190 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 190 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTT
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCc
Confidence 211000 11257899999999999999999999999 9999999777899
Q ss_pred EEEEEECCHHHHHHHHHHhCCceeC-CcEEEEEecCCC
Q 002871 318 HKFIEFYDVRAAEAALRALNRSDIN-GKRIKLEPSRPG 354 (872)
Q Consensus 318 faFVeF~~~e~A~kAl~~LnG~~l~-Gr~L~V~~s~p~ 354 (872)
||||+|.+.++|.+|++.|||..+. |++|+|.|+++.
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999999999999 999999999874
No 12
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=5.6e-27 Score=250.66 Aligned_cols=164 Identities=23% Similarity=0.433 Sum_probs=145.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr----~lFs~fG~I~~v~~--~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
...++++|||+|||+++++++|+ ++|++||.|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 35678999999999999999977 89999999999984 5678999999999999999999999999999999999
Q ss_pred eecCCCCCC-----------------------------------------------------------------------
Q 002871 264 HFSIPKDNP----------------------------------------------------------------------- 272 (872)
Q Consensus 264 ~~a~pk~~~----------------------------------------------------------------------- 272 (872)
.|+..+...
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 998654320
Q ss_pred ------------------------------------CCccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCc
Q 002871 273 ------------------------------------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 316 (872)
Q Consensus 273 ------------------------------------~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~sk 316 (872)
.......++|||+||+..+++++|+++|++||.|++|++....+
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 00111346799999999999999999999999999999877677
Q ss_pred cEEEEEECCHHHHHHHHHHhCCceeC-CcEEEEEecCC
Q 002871 317 HHKFIEFYDVRAAEAALRALNRSDIN-GKRIKLEPSRP 353 (872)
Q Consensus 317 GfaFVeF~~~e~A~kAl~~LnG~~l~-Gr~L~V~~s~p 353 (872)
|||||+|.+.++|.+|++.|||..|. |++|+|.|++.
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 99999999999999999999999999 99999999863
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=3.3e-27 Score=232.80 Aligned_cols=154 Identities=17% Similarity=0.341 Sum_probs=139.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccce
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 260 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~f----G-------~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~ 260 (872)
++.++|||+|||+++|+++|+++|++| | .|.++.+ ++++|||||+|.+.++|++|+ .+++..+.|++
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 357999999999999999999999999 7 7888864 567999999999999999999 79999999999
Q ss_pred eeeeecCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHH
Q 002871 261 LDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRA 335 (872)
Q Consensus 261 L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~ 335 (872)
|.|.++.+.... ....+|||+|||..+++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.
T Consensus 80 i~v~~~~~~~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 80 LKIRRPHDYQPL----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp CEEECCSSCCCC----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred eeecCCcccCCC----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 999997654322 24678999999999999999999999999999976 445689999999999999999999
Q ss_pred hCCceeCCcEEEEEec
Q 002871 336 LNRSDINGKRIKLEPS 351 (872)
Q Consensus 336 LnG~~l~Gr~L~V~~s 351 (872)
|||..|+|++|+|++|
T Consensus 156 l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred cCCCEECCeEEEEEeC
Confidence 9999999999999987
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=5.6e-27 Score=241.72 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=137.9
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCC
Q 002871 193 PSRTLFVRNIN-SNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 271 (872)
Q Consensus 193 ~srtLfV~NLP-~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 271 (872)
++++|||+||| ..+++++|+++|++||.|.+|++...++|||||+|.+.++|++|++.|+|..+.|++|+|.++..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 89999999999999999999998777899999999999999999999999999999999999864321
Q ss_pred CCC------------c---------------------cccccceeeeccCCccchhhHhhhhcccCCe--EEEEeCC---
Q 002871 272 PSE------------K---------------------DVNQGTLVVFNLDASVSNDDLRQIFGAYGEV--KEIRETP--- 313 (872)
Q Consensus 272 ~~~------------~---------------------~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V--~~vri~~--- 313 (872)
... + .....+|||+|||+++|+++|+++|++||.| .++++..
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 000 0 0123579999999999999999999999999 8887643
Q ss_pred CCccEEEEEECCHHHHHHHHHHhCCceeCCc----EEEEEec
Q 002871 314 HKRHHKFIEFYDVRAAEAALRALNRSDINGK----RIKLEPS 351 (872)
Q Consensus 314 ~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr----~L~V~~s 351 (872)
.++|+|||+|.+.++|.+|+..|||..|.|+ ++.|+++
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3469999999999999999999999999986 5776664
No 15
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=3e-27 Score=239.53 Aligned_cols=162 Identities=25% Similarity=0.339 Sum_probs=145.6
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCC
Q 002871 193 PSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 271 (872)
Q Consensus 193 ~srtLfV~NLP~-~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 271 (872)
.+++|||+|||+ ++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|++..+.|++|.|.++.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 368999999999 9999999999999999999987666689999999999999999999999999999999999875421
Q ss_pred CCCc-------------------------------cccccceeeeccCCccchhhHhhhhcccC-CeEEEEeCCCCccEE
Q 002871 272 PSEK-------------------------------DVNQGTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRETPHKRHHK 319 (872)
Q Consensus 272 ~~~~-------------------------------~~~~~tLfV~NLp~~~TeedL~e~Fs~fG-~V~~vri~~~skGfa 319 (872)
...+ .....+|||+|||..+++++|+++|++|| .|..|++.+..+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~a 161 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 161 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCE
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEE
Confidence 1000 12257899999999999999999999999 999999977779999
Q ss_pred EEEECCHHHHHHHHHHhCCceeC-CcEEEEEecCCC
Q 002871 320 FIEFYDVRAAEAALRALNRSDIN-GKRIKLEPSRPG 354 (872)
Q Consensus 320 FVeF~~~e~A~kAl~~LnG~~l~-Gr~L~V~~s~p~ 354 (872)
||+|.+.++|.+|++.|||..++ |++|+|.|+++.
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999999 999999999874
No 16
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=1.2e-26 Score=228.80 Aligned_cols=157 Identities=21% Similarity=0.401 Sum_probs=137.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC-----C--CcccEEEEEeCCHHHHHHHHHHhcCcccc---cceee
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA-----C--KHRGFVMISYYDIRAARTAMRALQNKPLR---RRKLD 262 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~-----~--ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~---gr~L~ 262 (872)
+.++|||+|||+++++++|+++|++||+|.+|++. + +++|||||+|.+.++|++|++.|++..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999998741 2 68899999999999999999999998876 67788
Q ss_pred eeecCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCC
Q 002871 263 IHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNR 338 (872)
Q Consensus 263 V~~a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG 338 (872)
+.++.+... ......+|||+|||.++|+++|+++|++||.|.++++. +.++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCC---SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Ecccccccc---ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 887765433 23456799999999999999999999999999999763 44689999999999999999999999
Q ss_pred ceeC---CcEEEEEecC
Q 002871 339 SDIN---GKRIKLEPSR 352 (872)
Q Consensus 339 ~~l~---Gr~L~V~~s~ 352 (872)
..+. |++|+|.|+.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8776 4999999973
No 17
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=7e-27 Score=235.65 Aligned_cols=162 Identities=17% Similarity=0.322 Sum_probs=142.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCccccccee
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 261 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~f----G-------~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L 261 (872)
..++|||+|||+++++++|+++|++| | .|.++.+ ++++|||||+|.+.++|++|+ .|++..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 47999999999999999999999999 5 7777754 578999999999999999999 799999999999
Q ss_pred eeeecCCCCCCC----------------CccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEE
Q 002871 262 DIHFSIPKDNPS----------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKF 320 (872)
Q Consensus 262 ~V~~a~pk~~~~----------------~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaF 320 (872)
.|.++.+..... .......+|||+|||..+++++|+++|++||.|..|++ ++.++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 999986542211 01134579999999999999999999999999999976 344589999
Q ss_pred EEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002871 321 IEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 321 VeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
|+|.+.++|.+|++.|||..|+|++|+|.+++++..
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999998764
No 18
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.94 E-value=2.3e-27 Score=232.82 Aligned_cols=155 Identities=19% Similarity=0.404 Sum_probs=139.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
++++|||+|||+++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 5799999999999999999999999999999984 467889999999999999999984 678999999999986
Q ss_pred CCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 002871 268 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (872)
Q Consensus 268 pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~ 342 (872)
++. .....++|||+|||.++++++|+++|++||.|..+++. +.++|||||+|.+.++|.+|++ ++|..++
T Consensus 80 ~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 80 PRD----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp CHH----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred chh----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 542 22346789999999999999999999999999999763 5568999999999999999998 9999999
Q ss_pred CcEEEEEecCCC
Q 002871 343 GKRIKLEPSRPG 354 (872)
Q Consensus 343 Gr~L~V~~s~p~ 354 (872)
|++|+|.++.|+
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 999999999886
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=1e-26 Score=249.87 Aligned_cols=183 Identities=20% Similarity=0.257 Sum_probs=158.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC---CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 188 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~---~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
+..+++.++|||+|||+++++++|+++|++||+|..|++. ..++|||||+|.+.++|++|++ +++..+.|++|.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 3456788999999999999999999999999999999852 2258999999999999999996 99999999999999
Q ss_pred ecCCCCCCCCccccccceeeeccCCccchhhHhhhhcccC-CeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCc
Q 002871 265 FSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRS 339 (872)
Q Consensus 265 ~a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG-~V~~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~ 339 (872)
++ ...+|||+|||..+++++|+++|++|| .|..|++. +.++|||||+|.+.++|.+|++.|+|.
T Consensus 114 ~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 114 HL-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp EC-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EC-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 86 257899999999999999999999999 99999764 356899999999999999999999999
Q ss_pred eeCCcEEEEEecCCCcc-----------cchhhhcCChh-ccHHHHHHhhhccCC
Q 002871 340 DINGKRIKLEPSRPGGA-----------RRNLMQQLNQE-LEQDEARGFRHQVGS 382 (872)
Q Consensus 340 ~l~Gr~L~V~~s~p~~~-----------r~~~~~ql~~~-~tq~~l~~~f~~~Gs 382 (872)
.|.|++|.|.++.+... +..++.+++.. +++++++.+|.+||.
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~ 237 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS 237 (292)
T ss_dssp EETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC
T ss_pred EeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC
Confidence 99999999999987643 23478899999 999999999999984
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=8.2e-25 Score=232.67 Aligned_cols=157 Identities=26% Similarity=0.380 Sum_probs=141.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCC
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 270 (872)
..+.++|||+|||+++|+++|+++|++||.|..|++ .+++|||||+|.+.++|++|+..|+|..+.|++|.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-- 95 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH-- 95 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc--
Confidence 456789999999999999999999999999999976 46799999999999999999999999999999999999863
Q ss_pred CCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhC-CceeC---
Q 002871 271 NPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALN-RSDIN--- 342 (872)
Q Consensus 271 ~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri----~~~skGfaFVeF~~~e~A~kAl~~Ln-G~~l~--- 342 (872)
..+|||+|||..+|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|| |..+.
T Consensus 96 --------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 167 (261)
T 3sde_A 96 --------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTT 167 (261)
T ss_dssp --------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSS
T ss_pred --------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCC
Confidence 468999999999999999999999999999976 45678999999999999999999995 55555
Q ss_pred CcEEEEEecCCCcccc
Q 002871 343 GKRIKLEPSRPGGARR 358 (872)
Q Consensus 343 Gr~L~V~~s~p~~~r~ 358 (872)
|++|.|.++.+...+.
T Consensus 168 ~r~i~v~~~~~~~~~~ 183 (261)
T 3sde_A 168 PRPVIVEPMEQFDDED 183 (261)
T ss_dssp CCBCEEEECCCEESSS
T ss_pred CceEEEeeccccCccC
Confidence 9999999998765433
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=4.8e-19 Score=172.75 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=113.1
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-cCcccccceeeeeecCCCC------------CCCCccccccceeeeccCCccchh
Q 002871 228 CKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSIPKD------------NPSEKDVNQGTLVVFNLDASVSND 294 (872)
Q Consensus 228 ~ksrG~AFVeF~d~e~A~~Ai~~L-ng~~l~gr~L~V~~a~pk~------------~~~~~~~~~~tLfV~NLp~~~Tee 294 (872)
.+.+|+++|+|.+.++|++|++.+ ++..+.| .+.+.++..+. .........++|||+|||++++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 356899999999999999999999 9999999 99999876421 112223456799999999999999
Q ss_pred hHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002871 295 DLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 295 dL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
+|+++|++||.|.+|++...++|||||+|.+.++|.+|++.|||..|.|++|+|++++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999987789999999999999999999999999999999999998864
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=3.1e-18 Score=167.99 Aligned_cols=131 Identities=22% Similarity=0.298 Sum_probs=104.3
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee-------eecCCCC--CCCCccccccceeeeccCCccchhhHh
Q 002871 227 ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI-------HFSIPKD--NPSEKDVNQGTLVVFNLDASVSNDDLR 297 (872)
Q Consensus 227 ~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V-------~~a~pk~--~~~~~~~~~~tLfV~NLp~~~TeedL~ 297 (872)
..+++|||||+|.+.++|++|++.+++....+..+.+ ....... ..........+|||+|||+++++++|+
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 88 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLR 88 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHH
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 4468999999999999999999988764332222222 2211111 111223456799999999999999999
Q ss_pred hhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCccc
Q 002871 298 QIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 357 (872)
Q Consensus 298 e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r 357 (872)
++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|||..|.|++|+|.+++++..+
T Consensus 89 ~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 89 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp HHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred HHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999986 3567899999999999999999999999999999999999987543
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=6.8e-18 Score=157.80 Aligned_cols=103 Identities=15% Similarity=0.290 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
..++|||+|||+++++++|+++|++||.|.+|++ ...++|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4679999999999999999999999999999874 3457899999999999999999999999999999999999776
Q ss_pred CCCCC----ccccccceeeeccCCccchhh
Q 002871 270 DNPSE----KDVNQGTLVVFNLDASVSNDD 295 (872)
Q Consensus 270 ~~~~~----~~~~~~tLfV~NLp~~~Teed 295 (872)
..... ......+|||+||++++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 53321 222345799999999999864
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.63 E-value=5.4e-16 Score=144.89 Aligned_cols=81 Identities=23% Similarity=0.397 Sum_probs=72.1
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeC---CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~---~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
..++|||+|||+++++++|+++|++||.|.+|++. ..++|||||+|.+.++|++|++.|+|..|+|++|+|.+++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 35689999999999999999999999999999763 346899999999999999999999999999999999999887
Q ss_pred cccc
Q 002871 355 GARR 358 (872)
Q Consensus 355 ~~r~ 358 (872)
..+.
T Consensus 84 ~~~~ 87 (115)
T 4f25_A 84 KERE 87 (115)
T ss_dssp CC--
T ss_pred cccc
Confidence 6543
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.62 E-value=7.1e-16 Score=140.65 Aligned_cols=76 Identities=29% Similarity=0.492 Sum_probs=71.1
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
..++|||+|||+++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..|+|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 3568999999999999999999999999999976 35678999999999999999999999999999999999998
Q ss_pred C
Q 002871 353 P 353 (872)
Q Consensus 353 p 353 (872)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 7
No 26
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=7.3e-16 Score=143.21 Aligned_cols=102 Identities=24% Similarity=0.397 Sum_probs=91.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~--~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
.+.++|||+|||+++++++|+++|++||.|..|.+ .+.++|||||+|.+.++|++|+..|+|..+.|+.|.|.|+.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 46799999999999999999999999999999985 4667899999999999999999999999999999999999654
Q ss_pred CCCCCccccccceeeeccCCccchhhHhhhhcccCC
Q 002871 270 DNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGE 305 (872)
Q Consensus 270 ~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~ 305 (872)
... ++++...++++|+++|++||.
T Consensus 86 ~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 86 RAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred hhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 321 567888999999999999984
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=138.41 Aligned_cols=76 Identities=24% Similarity=0.458 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
..++|||+|||+++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|+|+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4689999999999999999999999999999873 46789999999999999999999999999999999999997
Q ss_pred C
Q 002871 268 P 268 (872)
Q Consensus 268 p 268 (872)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 28
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.60 E-value=6e-16 Score=148.98 Aligned_cols=121 Identities=23% Similarity=0.350 Sum_probs=77.5
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe
Q 002871 232 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE 311 (872)
Q Consensus 232 G~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri 311 (872)
-++|++|.+...+..|+..+++....++. .+.+.. +.......++|||+|||.++++++|+++|++||.|+.|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR----PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp -------------------------------CCSCC----SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCC----CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 36788999999999999998887665543 222322 2233445789999999999999999999999999999987
Q ss_pred -----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCccc
Q 002871 312 -----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 357 (872)
Q Consensus 312 -----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r 357 (872)
+++++|||||+|.+.++|++|++.|||..|.|++|+|++++++..+
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 3456899999999999999999999999999999999999987544
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.59 E-value=2.8e-15 Score=139.50 Aligned_cols=83 Identities=20% Similarity=0.287 Sum_probs=76.0
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
..++|||+||++++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|||..|+|++|+|+++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4678999999999999999999999999999976 36789999999999999999999999999999999999998
Q ss_pred CCcccchh
Q 002871 353 PGGARRNL 360 (872)
Q Consensus 353 p~~~r~~~ 360 (872)
.+..++.+
T Consensus 85 ~~~~~~~~ 92 (110)
T 3s8s_A 85 KGQQRMKY 92 (110)
T ss_dssp TTHHHHHH
T ss_pred CCcHHHHH
Confidence 87665543
No 30
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=3.6e-15 Score=138.48 Aligned_cols=103 Identities=19% Similarity=0.387 Sum_probs=92.1
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri--~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
..++|||+|||..+++++|+++|++||.|..|++ .+.++|||||+|.+.++|.+|++.|||..++|+.|+|.++.+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 4579999999999999999999999999999987 45668999999999999999999999999999999999998765
Q ss_pred ccchhhhcCChhccHHHHHHhhhccCCCC
Q 002871 356 ARRNLMQQLNQELEQDEARGFRHQVGSPV 384 (872)
Q Consensus 356 ~r~~~~~ql~~~~tq~~l~~~f~~~Gsp~ 384 (872)
.. +++....+++++..+|.+||...
T Consensus 87 ~~----~~~~~~~~~~~l~~~~~~~g~~~ 111 (115)
T 3lqv_A 87 AF----QKMDTKKKEEQLKLLKEKYGINT 111 (115)
T ss_dssp HT----TTSCHHHHHHHHHHHHHHHCCCC
T ss_pred hh----hhhhHhHhHHHHHHHHHHhCCCC
Confidence 43 55677788899999999999643
No 31
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=3.5e-15 Score=135.44 Aligned_cols=94 Identities=24% Similarity=0.353 Sum_probs=81.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCCCC
Q 002871 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSE 274 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~ 274 (872)
++|||+|||+++++++|+++|++||+|..|.+...++|||||+|.+.++|++|++.|++..+.|++|.|+++.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 58999999999999999999999999999986544799999999999999999999999999999999999977653221
Q ss_pred c------cccccceeeeccC
Q 002871 275 K------DVNQGTLVVFNLD 288 (872)
Q Consensus 275 ~------~~~~~tLfV~NLp 288 (872)
. .....+|||+||+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 1 1225689999997
No 32
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.58 E-value=6.4e-15 Score=143.20 Aligned_cols=150 Identities=19% Similarity=0.248 Sum_probs=109.7
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccCC-----CCcEEEEecChhhHHHhhhhhhcccCCcCCCcccc
Q 002871 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDS-----GGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHY 174 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf~s-----~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~ 174 (872)
++||.++.+++-+ ..+|+.++.+.+ .+... .|.++|+|...+.+..++..++..... +..+...
T Consensus 5 V~nlp~~~t~~~l---------~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~i~v~ 74 (166)
T 3md3_A 5 VGNLDKAITEDIL---------KQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE-NNIVKIN 74 (166)
T ss_dssp EEEEETTCCHHHH---------HHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEE
T ss_pred ECCCCCcCCHHHH---------HHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccC-CCeeEEE
Confidence 4566665444444 445666677777 44322 245899999999999998766522111 1111100
Q ss_pred ccCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHH
Q 002871 175 PISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMR 249 (872)
Q Consensus 175 ~l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~ 249 (872)
...........+.++|||+|||.++++++|+++|++||.|..+.+ ++.++|||||+|.+.++|.+|++
T Consensus 75 -------~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 75 -------WAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp -------ECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred -------EcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 001112234556889999999999999999999999999999874 35678999999999999999999
Q ss_pred HhcCcccccceeeeeecC
Q 002871 250 ALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 250 ~Lng~~l~gr~L~V~~a~ 267 (872)
.|+|..+.|++|.|.|+.
T Consensus 148 ~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 148 SMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHTTCEETTEECEEEESC
T ss_pred HhCCCccCCcEEEEEecC
Confidence 999999999999999985
No 33
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=5.6e-15 Score=152.03 Aligned_cols=105 Identities=19% Similarity=0.299 Sum_probs=93.7
Q ss_pred cccceeeeccC-CccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002871 278 NQGTLVVFNLD-ASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 278 ~~~tLfV~NLp-~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
...+|||+||+ ..+++++|+++|++||.|.+|++...++|||||+|.+.++|++|++.|||..|.|++|+|.+++.+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 35789999999 89999999999999999999999877899999999999999999999999999999999999863210
Q ss_pred -----------------------------------------cchhhhcCChhccHHHHHHhhhccCC
Q 002871 357 -----------------------------------------RRNLMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 357 -----------------------------------------r~~~~~ql~~~~tq~~l~~~f~~~Gs 382 (872)
+..++.+|+..+++++++.+|.+||.
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~ 149 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGV 149 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTC
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 11357889999999999999999994
No 34
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.56 E-value=8.9e-15 Score=142.32 Aligned_cols=104 Identities=26% Similarity=0.430 Sum_probs=94.8
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002871 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
.++|||+|||.++++++|+++|++||.|.++++ ++.++|||||+|.+.++|.+|++.|+|..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 468999999999999999999999999999976 455679999999999999999999999999999999999987
Q ss_pred Ccc----cchhhhcCChhccHHHHHHhhhccCC
Q 002871 354 GGA----RRNLMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 354 ~~~----r~~~~~ql~~~~tq~~l~~~f~~~Gs 382 (872)
... ...++.+++..+++++++.+|.+||.
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 114 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 114 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCC
Confidence 654 34588999999999999999999984
No 35
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=133.52 Aligned_cols=81 Identities=12% Similarity=0.248 Sum_probs=72.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcc--cccceeeeeec
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFS 266 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~--l~gr~L~V~~a 266 (872)
....++++|||+|||+++|+++|+++|++||.|.+|++. +.||||||+|.+.++|.+|++.|++.. +.|++|+|+|+
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 345678999999999999999999999999999999764 578999999999999999999999886 78999999999
Q ss_pred CCCC
Q 002871 267 IPKD 270 (872)
Q Consensus 267 ~pk~ 270 (872)
.+++
T Consensus 95 ~~k~ 98 (100)
T 3r27_A 95 TSQK 98 (100)
T ss_dssp SCSC
T ss_pred cccc
Confidence 7653
No 36
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.55 E-value=1.3e-14 Score=142.33 Aligned_cols=151 Identities=17% Similarity=0.248 Sum_probs=109.1
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-ccc--------CCCCcEEEEecChhhHHHhhhhhhcccCCcCCCc
Q 002871 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLF--------DSGGGMELEFEPHESLSIGVSKLNISDGIAGTGI 171 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf--------~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv 171 (872)
++||.+..+++-+.. +|+.++.|.+ .+. ...|.++|+|...+.+..++..++-.........
T Consensus 8 V~nLp~~~te~~l~~---------~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 78 (175)
T 3nmr_A 8 VGQVPRTWSEKDLRE---------LFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH 78 (175)
T ss_dssp EESCCTTCCHHHHHH---------HHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred EeCCCCCCCHHHHHH---------HHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCcc
Confidence 789988765555554 5556666666 333 2234589999999999999887662222111111
Q ss_pred cccccCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHH
Q 002871 172 AHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTA 247 (872)
Q Consensus 172 ~~~~l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~A 247 (872)
... +. ............++|||+|||+++++++|+++|++||.|.+|++ .+.++|||||+|.+.++|.+|
T Consensus 79 ~~~-~~-----~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 79 PIQ-MK-----PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp CCE-EE-----ECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred ceE-Ec-----cccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
Confidence 000 00 01111223346789999999999999999999999999999874 355789999999999999999
Q ss_pred HHHhcCcccc---cceeeeeec
Q 002871 248 MRALQNKPLR---RRKLDIHFS 266 (872)
Q Consensus 248 i~~Lng~~l~---gr~L~V~~a 266 (872)
++.|+|..+. +++|.|.|+
T Consensus 153 ~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 153 IKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHhcCCcccCCCCCCeEEEec
Confidence 9999998876 499999997
No 37
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.7e-14 Score=128.89 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
..+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999999999999999985 566889999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002871 266 SIPKDNP 272 (872)
Q Consensus 266 a~pk~~~ 272 (872)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9877554
No 38
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=133.67 Aligned_cols=82 Identities=26% Similarity=0.318 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC--cccccceeeeeecCC
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSIP 268 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng--~~l~gr~L~V~~a~p 268 (872)
..+.++|||+|||+++++++|+++|++||+|.+|++. +.||||||+|.+.++|++|++.|++ ..|.|++|+|.|+.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 4568999999999999999999999999999999865 3589999999999999999998864 789999999999987
Q ss_pred CCCCC
Q 002871 269 KDNPS 273 (872)
Q Consensus 269 k~~~~ 273 (872)
+....
T Consensus 92 ~~~~~ 96 (105)
T 1sjq_A 92 KELKT 96 (105)
T ss_dssp SSCCC
T ss_pred CCCCc
Confidence 65443
No 39
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.55 E-value=1.3e-14 Score=141.81 Aligned_cols=104 Identities=23% Similarity=0.387 Sum_probs=94.3
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002871 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
.++|||+|||.++++++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|+|..+.|++|+|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 5789999999999999999999999999999763 44679999999999999999999999999999999999987
Q ss_pred Ccc----cchhhhcCChhccHHHHHHhhhccCC
Q 002871 354 GGA----RRNLMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 354 ~~~----r~~~~~ql~~~~tq~~l~~~f~~~Gs 382 (872)
... ...++.+++..+++++++.+|.+||.
T Consensus 83 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 115 (168)
T 1b7f_A 83 GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGS 115 (168)
T ss_dssp CSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSC
T ss_pred CcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCc
Confidence 653 34588999999999999999999984
No 40
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.55 E-value=2.5e-15 Score=134.79 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=70.3
Q ss_pred cceeeeccCCccchhhHhhhhcccC-CeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhC-CceeCCcEEEEEecC
Q 002871 280 GTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALN-RSDINGKRIKLEPSR 352 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG-~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~Ln-G~~l~Gr~L~V~~s~ 352 (872)
++|||+|||+++|+++|+++|++|| .|++|++ ++.++|||||+|.+.++|++|++.|+ +..|+|++|+|++++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 7999876 35679999999999999999999884 568999999999999
Q ss_pred CCccc
Q 002871 353 PGGAR 357 (872)
Q Consensus 353 p~~~r 357 (872)
|+...
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 41
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.55 E-value=7.5e-15 Score=151.10 Aligned_cols=152 Identities=16% Similarity=0.242 Sum_probs=112.2
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccC------CCCcEEEEecChhhHHHhhhhhhcccCCcCCCccc
Q 002871 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFD------SGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAH 173 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf~------s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~ 173 (872)
++||.++.+++-|.. +|+.+++|.+ .+.. ..|.++|+|+..+.+..++..++..... ...+..
T Consensus 20 VgnLp~~~te~~L~~---------~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~-g~~i~~ 89 (213)
T 4f02_A 20 VGDLHPDVTEAMLYE---------KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK-GKPVRI 89 (213)
T ss_dssp EESCCTTCCHHHHHH---------HHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEE
T ss_pred EeCCCCCCCHHHHHH---------HHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC-Cccccc
Confidence 899999865555554 5666677776 4432 2345899999999999998876632211 000100
Q ss_pred cccCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHH
Q 002871 174 YPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRA 250 (872)
Q Consensus 174 ~~l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---~~ksrG~AFVeF~d~e~A~~Ai~~ 250 (872)
... ...........++|||+|||+++++++|+++|++||.|..|++ ...++|||||+|.+.++|++|++.
T Consensus 90 -~~~------~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~ 162 (213)
T 4f02_A 90 -MWS------QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 162 (213)
T ss_dssp -EEC------CCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHH
T ss_pred -ccc------cccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHH
Confidence 000 0000111234679999999999999999999999999999874 345789999999999999999999
Q ss_pred hcCcccccceeeeeecCCC
Q 002871 251 LQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 251 Lng~~l~gr~L~V~~a~pk 269 (872)
|+|..|.|++|.|.|+.++
T Consensus 163 lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 163 MNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HTTCEETTEECEEEECCCH
T ss_pred hCCCEECCEEEEEEEcCCC
Confidence 9999999999999999765
No 42
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.55 E-value=7.6e-15 Score=145.55 Aligned_cols=123 Identities=20% Similarity=0.290 Sum_probs=72.9
Q ss_pred EEeCCHHHHHHHHHHhcCcccc--cceeeeeecCCCC----------------CCCCccccccceeeeccCCccchhhHh
Q 002871 236 ISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKD----------------NPSEKDVNQGTLVVFNLDASVSNDDLR 297 (872)
Q Consensus 236 VeF~d~e~A~~Ai~~Lng~~l~--gr~L~V~~a~pk~----------------~~~~~~~~~~tLfV~NLp~~~TeedL~ 297 (872)
.+|.+.++|+.|+..|++...+ |+.....+..... .........++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6899999999999999887665 5555555432110 011122345689999999999999999
Q ss_pred hhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcccc
Q 002871 298 QIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARR 358 (872)
Q Consensus 298 e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r~ 358 (872)
++|++||.|..|++. +.++|||||+|.+.++|.+||+.|||..|.|++|.|.|+.++..++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999763 4468999999999999999999999999999999999998766543
No 43
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=1.1e-14 Score=143.70 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=113.8
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCC
Q 002871 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNG 179 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~ 179 (872)
++||.+..+++-+..++.+++... . ..+.+ ..-...|.++|+|+..+.+..++. ++-.... +..+.+. .
T Consensus 18 V~nLp~~~t~~~l~~~f~~~g~~~--~--~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~-g~~l~v~-~--- 87 (175)
T 1fje_B 18 IGNLNPNKSVAELKVAISELFAKN--D--LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF-GNEIKLE-K--- 87 (175)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHH--T--CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEET-TEEEEEE-C---
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcc--e--EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeC-CeEEEEe-c---
Confidence 999999877666665555554332 1 11222 222356779999999999999984 4421111 1111110 0
Q ss_pred CCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccc
Q 002871 180 VGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 259 (872)
Q Consensus 180 ~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr 259 (872)
..........+.++|||+|||.++++++|+++|++||.|..+..++.++|||||+|.+.++|.+|++.|+|..+.|+
T Consensus 88 ---~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (175)
T 1fje_B 88 ---PKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 164 (175)
T ss_dssp ---CCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTE
T ss_pred ---CCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 01112234456799999999999999999999999999998855678999999999999999999999999999999
Q ss_pred eeeeeecCCC
Q 002871 260 KLDIHFSIPK 269 (872)
Q Consensus 260 ~L~V~~a~pk 269 (872)
+|.|.|+.++
T Consensus 165 ~i~v~~a~~k 174 (175)
T 1fje_B 165 SVSLYYTGEK 174 (175)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEecCCC
Confidence 9999999765
No 44
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.54 E-value=6.1e-14 Score=140.80 Aligned_cols=167 Identities=13% Similarity=0.170 Sum_probs=118.1
Q ss_pred ccCCCCcchhHHHhhccccc----ccccCCCccccccc-cccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccc
Q 002871 101 IGSLLPDDENDLLAGLVDDF----DLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYP 175 (872)
Q Consensus 101 iwNlLp~~~davls~vadel----~l~klfsd~~diee-dlf~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~ 175 (872)
++||.++.+++-+..++.++ ++.. .....+.+ .+....|.++|+|...+.+..++ .++-... .+..+.+..
T Consensus 9 V~nLp~~~te~~l~~~F~~~g~i~g~~~--~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~-~g~~i~v~~ 84 (198)
T 2yh0_A 9 VGNIPFGITEEAMMDFFNAQMRLGGLTQ--APGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIF-QGQSLKIRR 84 (198)
T ss_dssp EESCCTTCCHHHHHHHHHHHHHHHTCCS--SSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEE-TTEEEEEEC
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhccccc--CCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEE-cCceEEEeC
Confidence 88999987777777777776 4332 11123444 45556788999999999999998 4442111 111111110
Q ss_pred cCCCC-Cc---------c-cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeC
Q 002871 176 ISNGV-GT---------V-AGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYY 239 (872)
Q Consensus 176 l~n~~-~~---------~-~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~ 239 (872)
..... .. . .........+.++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~ 164 (198)
T 2yh0_A 85 PHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYV 164 (198)
T ss_dssp CCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEES
T ss_pred CCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEEC
Confidence 00000 00 0 0011122356799999999999999999999999999999874 4557999999999
Q ss_pred CHHHHHHHHHHhcCcccccceeeeeecCCCCC
Q 002871 240 DIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 271 (872)
Q Consensus 240 d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 271 (872)
+.++|++|++.|+|..+.|++|.|.|+.++..
T Consensus 165 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 165 DINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp SSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999987643
No 45
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=130.13 Aligned_cols=81 Identities=26% Similarity=0.400 Sum_probs=74.7
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35679999999999999999999999999999987 4557899999999999999999999999999999999999
Q ss_pred CCCccc
Q 002871 352 RPGGAR 357 (872)
Q Consensus 352 ~p~~~r 357 (872)
+++..+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987654
No 46
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.54 E-value=4.7e-15 Score=132.97 Aligned_cols=79 Identities=22% Similarity=0.390 Sum_probs=70.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhc-Ccccccceeeeeec
Q 002871 194 SRTLFVRNINSNVEDLELRSLFEQYG-DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQ-NKPLRRRKLDIHFS 266 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG-~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Ln-g~~l~gr~L~V~~a 266 (872)
+++|||+|||+++|+++|+++|++|| +|.+|++ +++++|||||+|.+.++|++|++.++ +..+.|++|.|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 7988863 46789999999999999999999874 56799999999999
Q ss_pred CCCCCC
Q 002871 267 IPKDNP 272 (872)
Q Consensus 267 ~pk~~~ 272 (872)
.|+...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887654
No 47
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=134.09 Aligned_cols=79 Identities=18% Similarity=0.377 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
+.+.++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456899999999999999999999999999999974 477899999999999999999999999999999999999
Q ss_pred cCCC
Q 002871 266 SIPK 269 (872)
Q Consensus 266 a~pk 269 (872)
+..+
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8543
No 48
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=4e-14 Score=138.98 Aligned_cols=153 Identities=13% Similarity=0.199 Sum_probs=114.0
Q ss_pred ccCCCCcchhHHHhhccccc----ccccCCCccccccc-cccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccc
Q 002871 101 IGSLLPDDENDLLAGLVDDF----DLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYP 175 (872)
Q Consensus 101 iwNlLp~~~davls~vadel----~l~klfsd~~diee-dlf~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~ 175 (872)
++||.++.+++-+..+..++ ++.. .....+.+ .+..+.|.++|+|+..+.+..++ .++-... .+..+...
T Consensus 9 V~nLp~~~t~~~l~~~F~~~g~~~g~~~--~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~-~g~~i~v~- 83 (172)
T 2g4b_A 9 VGNIPFGITEEAMMDFFNAQMRLGGLTQ--APGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIF-QGQSLKIR- 83 (172)
T ss_dssp EESCCTTCCHHHHHHHHHHHHHHTTCCS--SSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEE-TTEECEEE-
T ss_pred EcCCCcccCHHHHHHHHHHHhhhccccc--CCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEe-cCceeeec-
Confidence 89999987777777777777 4332 11114444 45556788999999999999988 4441111 01111000
Q ss_pred cCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHH
Q 002871 176 ISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRA 250 (872)
Q Consensus 176 l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~ 250 (872)
. ..........++|||+|||.++++++|+++|++||+|..|.+ ++.++|||||+|.+.++|++|++.
T Consensus 84 ~--------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 84 R--------PHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp C--------CSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred C--------CcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 0 011112344799999999999999999999999999999884 556799999999999999999999
Q ss_pred hcCcccccceeeeeec
Q 002871 251 LQNKPLRRRKLDIHFS 266 (872)
Q Consensus 251 Lng~~l~gr~L~V~~a 266 (872)
|+|..+.|++|.|+|+
T Consensus 156 l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred cCCCEECCeEEEEEeC
Confidence 9999999999999987
No 49
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=128.83 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=74.1
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
....++|||+|||.++++++|+++|++||.|..|++. ++++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3456899999999999999999999999999999763 456799999999999999999999999999999999999
Q ss_pred CCCcc
Q 002871 352 RPGGA 356 (872)
Q Consensus 352 ~p~~~ 356 (872)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 98764
No 50
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.2e-14 Score=130.93 Aligned_cols=82 Identities=28% Similarity=0.446 Sum_probs=74.2
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeC--CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~--~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
....++|||+|||.++++++|+++|++||.|..|++. +.+++||||+|.+.++|++|++.||+..|.|++|+|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 3456799999999999999999999999999999874 34689999999999999999999999999999999999988
Q ss_pred Cccc
Q 002871 354 GGAR 357 (872)
Q Consensus 354 ~~~r 357 (872)
+..+
T Consensus 99 ~~~~ 102 (109)
T 1x4a_A 99 GRGT 102 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 51
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.8e-14 Score=128.09 Aligned_cols=83 Identities=16% Similarity=0.292 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
....+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 44567899999999999999999999999999999984 4568899999999999999999999999999999999
Q ss_pred eecCCCCC
Q 002871 264 HFSIPKDN 271 (872)
Q Consensus 264 ~~a~pk~~ 271 (872)
+|+.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987654
No 52
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.2e-14 Score=134.47 Aligned_cols=89 Identities=25% Similarity=0.316 Sum_probs=76.5
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC--ccccccee
Q 002871 184 AGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKL 261 (872)
Q Consensus 184 ~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng--~~l~gr~L 261 (872)
.++......++++|||+|||+++++++|+++|++||.|.+|++. +.+|||||+|.+.++|++|++.+++ ..|.|++|
T Consensus 21 ~~~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 21 MGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp -CCTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred cccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34444556678999999999999999999999999999999864 4589999999999999999998874 68999999
Q ss_pred eeeecCCCCCCC
Q 002871 262 DIHFSIPKDNPS 273 (872)
Q Consensus 262 ~V~~a~pk~~~~ 273 (872)
+|.|+.++....
T Consensus 100 ~V~~a~~k~~~~ 111 (119)
T 2ad9_A 100 YIQFSNHKELKT 111 (119)
T ss_dssp EEEECSSSSCCC
T ss_pred EEEEccCCCCCc
Confidence 999998765443
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.53 E-value=2.5e-14 Score=124.69 Aligned_cols=76 Identities=21% Similarity=0.311 Sum_probs=70.8
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002871 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
.+|||+|||.++++++|+++|++||.|.++++ ++.++|||||+|.+.++|++|++.|||..++|++|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999976 3456899999999999999999999999999999999999986
Q ss_pred c
Q 002871 355 G 355 (872)
Q Consensus 355 ~ 355 (872)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 54
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3e-14 Score=129.66 Aligned_cols=82 Identities=21% Similarity=0.337 Sum_probs=74.8
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
....++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 345789999999999999999999999999999976 345689999999999999999999999999999999999
Q ss_pred cCCCccc
Q 002871 351 SRPGGAR 357 (872)
Q Consensus 351 s~p~~~r 357 (872)
++++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9987654
No 55
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=5e-14 Score=129.93 Aligned_cols=84 Identities=14% Similarity=0.213 Sum_probs=73.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCc--ccccceeeee
Q 002871 187 HPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK--PLRRRKLDIH 264 (872)
Q Consensus 187 ~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~--~l~gr~L~V~ 264 (872)
.+....++++|||+|||+++++++|+++|++||.|..|.+. +.||||||+|.+.++|++|++.|++. .+.|++|+|.
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34455678999999999999999999999999999999864 46899999999999999999998765 4899999999
Q ss_pred ecCCCCC
Q 002871 265 FSIPKDN 271 (872)
Q Consensus 265 ~a~pk~~ 271 (872)
|+.++..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9976543
No 56
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.6e-14 Score=130.36 Aligned_cols=82 Identities=23% Similarity=0.310 Sum_probs=75.0
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
....++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999999999999999999999999999987 345789999999999999999999999999999999999
Q ss_pred cCCCccc
Q 002871 351 SRPGGAR 357 (872)
Q Consensus 351 s~p~~~r 357 (872)
++++..+
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9987654
No 57
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=126.24 Aligned_cols=77 Identities=17% Similarity=0.355 Sum_probs=69.8
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
...+|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..++|++|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4578999999999999999999999999999976 34568999999999999999999999999999999999998
Q ss_pred CC
Q 002871 353 PG 354 (872)
Q Consensus 353 p~ 354 (872)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 58
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=6.3e-14 Score=128.14 Aligned_cols=84 Identities=25% Similarity=0.464 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe------CCCcccEEEEEeCCHHHHHHHHHHh-cCccccccee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKL 261 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~------~~ksrG~AFVeF~d~e~A~~Ai~~L-ng~~l~gr~L 261 (872)
....+.++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.| ++..|.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567899999999999999999999999999999985 3456899999999999999999999 9999999999
Q ss_pred eeeecCCCCCC
Q 002871 262 DIHFSIPKDNP 272 (872)
Q Consensus 262 ~V~~a~pk~~~ 272 (872)
.|+|+.++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876543
No 59
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-14 Score=134.41 Aligned_cols=80 Identities=15% Similarity=0.220 Sum_probs=72.6
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC--ceeCCcEEEEEecCCCc
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR--SDINGKRIKLEPSRPGG 355 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG--~~l~Gr~L~V~~s~p~~ 355 (872)
...+|||+|||+++++++|+++|++||.|++|++.. .+|||||+|.+.++|++|++.|++ ..|.|++|+|.+++++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 467999999999999999999999999999999864 489999999999999999999864 79999999999998876
Q ss_pred ccc
Q 002871 356 ARR 358 (872)
Q Consensus 356 ~r~ 358 (872)
.+.
T Consensus 94 ~~~ 96 (105)
T 1sjq_A 94 LKT 96 (105)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 60
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=7.8e-14 Score=126.00 Aligned_cols=82 Identities=23% Similarity=0.459 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ |++..+.|++|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3456899999999999999999999999999999985 35689999999999999999998 99999999999999
Q ss_pred ecCCCCCC
Q 002871 265 FSIPKDNP 272 (872)
Q Consensus 265 ~a~pk~~~ 272 (872)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876543
No 61
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=2e-14 Score=131.78 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=71.1
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCce--eCCcEEEEEecCCCc
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSD--INGKRIKLEPSRPGG 355 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~--l~Gr~L~V~~s~p~~ 355 (872)
..++|||+|||+++|+++|+++|++||.|.+|++. +.+|||||+|.+.++|.+|++.|++.. |.|++|+|+||+++.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 56799999999999999999999999999999885 468999999999999999999999875 889999999998753
No 62
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3.6e-14 Score=129.73 Aligned_cols=83 Identities=24% Similarity=0.451 Sum_probs=75.1
Q ss_pred ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC------CCCccEEEEEECCHHHHHHHHHHh-CCceeCCcEEE
Q 002871 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALRAL-NRSDINGKRIK 347 (872)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~------~~skGfaFVeF~~~e~A~kAl~~L-nG~~l~Gr~L~ 347 (872)
.....++|||+|||..+++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.| ||..|.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 34467899999999999999999999999999999874 345899999999999999999999 99999999999
Q ss_pred EEecCCCccc
Q 002871 348 LEPSRPGGAR 357 (872)
Q Consensus 348 V~~s~p~~~r 357 (872)
|++++++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999987654
No 63
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.6e-14 Score=128.45 Aligned_cols=84 Identities=17% Similarity=0.306 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~--~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
....+.++|||+|||+++++++|+++|++||.|..|++ ...++|||||+|.+.++|++|++.|++..|.|++|.|+|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34567899999999999999999999999999999885 4457899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 002871 267 IPKDNP 272 (872)
Q Consensus 267 ~pk~~~ 272 (872)
.++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876543
No 64
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.52 E-value=8.1e-14 Score=129.33 Aligned_cols=84 Identities=15% Similarity=0.364 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
....+.++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44567899999999999999999999999999999874 4567899999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002871 264 HFSIPKDNP 272 (872)
Q Consensus 264 ~~a~pk~~~ 272 (872)
+|+.++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 65
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.2e-14 Score=129.53 Aligned_cols=84 Identities=19% Similarity=0.313 Sum_probs=76.0
Q ss_pred ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC---CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~---~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
.....++|||+|||+.+++++|+++|++||.|..|++. +..++||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34467899999999999999999999999999999764 467899999999999999999999999999999999999
Q ss_pred CCCcccc
Q 002871 352 RPGGARR 358 (872)
Q Consensus 352 ~p~~~r~ 358 (872)
+++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876544
No 66
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.52 E-value=3.3e-14 Score=124.98 Aligned_cols=78 Identities=17% Similarity=0.388 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
.+.++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|++..+.|++|.|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999884 4567899999999999999999999999999999999999
Q ss_pred CCC
Q 002871 267 IPK 269 (872)
Q Consensus 267 ~pk 269 (872)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 67
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.9e-14 Score=126.56 Aligned_cols=79 Identities=27% Similarity=0.476 Sum_probs=72.4
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
....++|||+|||..+++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..|+|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3457899999999999999999999999999999763 45689999999999999999999999999999999999
Q ss_pred cCCC
Q 002871 351 SRPG 354 (872)
Q Consensus 351 s~p~ 354 (872)
++++
T Consensus 92 a~~g 95 (95)
T 2cqc_A 92 PSSG 95 (95)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 9763
No 68
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.52 E-value=1.4e-14 Score=141.61 Aligned_cols=147 Identities=24% Similarity=0.312 Sum_probs=109.4
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccC------CCCcEEEEecChhhHHHhhhhhhcccCCcCCCccc
Q 002871 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFD------SGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAH 173 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf~------s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~ 173 (872)
++||.++.+++-+.. +|+.++.|.+ .+.. ..|.++|+|+..+.+..++......+ +.
T Consensus 8 v~nLp~~~t~~~l~~---------~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~-----g~-- 71 (167)
T 2cjk_A 8 IGGLNWDTTEDNLRE---------YFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILD-----GK-- 71 (167)
T ss_dssp ECSCCTTCCHHHHHH---------HHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEET-----TE--
T ss_pred EeCCCCCCCHHHHHH---------HHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccC-----Ce--
Confidence 889988755555554 5666667776 4432 23569999999999999887522111 11
Q ss_pred cccCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHH
Q 002871 174 YPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAM 248 (872)
Q Consensus 174 ~~l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai 248 (872)
.+... .........+.++|||+|||+++++++|+++|++||.|..|.+ ++.++|||||+|.+.++|.+|+
T Consensus 72 -~i~v~----~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 146 (167)
T 2cjk_A 72 -VIDPK----RAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC 146 (167)
T ss_dssp -ECCCE----ECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHH
T ss_pred -Ecccc----cccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 01100 0000011234689999999999999999999999999999983 4668899999999999999999
Q ss_pred HHhcCcccccceeeeeecCCC
Q 002871 249 RALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 249 ~~Lng~~l~gr~L~V~~a~pk 269 (872)
+ +++..+.|++|.|.|+.|+
T Consensus 147 ~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 147 Q-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp H-CSEECSSSSCEEEEECCCC
T ss_pred h-CCCEEeCCeEEEEeecCCC
Confidence 8 9999999999999999875
No 69
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.52 E-value=6.6e-14 Score=137.08 Aligned_cols=133 Identities=21% Similarity=0.294 Sum_probs=96.6
Q ss_pred CCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCC----CCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHH
Q 002871 139 SGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISN----GVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSL 214 (872)
Q Consensus 139 s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n----~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~l 214 (872)
..|..+|+|...+.+..++....-.... ........... ................++|||+|||+++++++|+++
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGV-DGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTC-CCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCC-CCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 3466889999999998887665411110 00000000000 000111112233456799999999999999999999
Q ss_pred hhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCC
Q 002871 215 FEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP 272 (872)
Q Consensus 215 Fs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~ 272 (872)
|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.|+.++...
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 999999999984 4678999999999999999999999999999999999999876543
No 70
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.52 E-value=5.6e-14 Score=124.99 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|+++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 456799999999999999999999999999999874 45678999999999999999999999999999999999998
Q ss_pred CCCCC
Q 002871 268 PKDNP 272 (872)
Q Consensus 268 pk~~~ 272 (872)
+...+
T Consensus 85 ~~~~~ 89 (92)
T 2dgv_A 85 NASGP 89 (92)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76543
No 71
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.7e-14 Score=128.41 Aligned_cols=84 Identities=26% Similarity=0.370 Sum_probs=76.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002871 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 188 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
+....+.++|||+|||.++++++|+++|++||.|..|.+ ++.++|||||+|.+.++|++|++.|++..+.|++|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 344567899999999999999999999999999999984 256789999999999999999999999999999999
Q ss_pred eeecCCCCC
Q 002871 263 IHFSIPKDN 271 (872)
Q Consensus 263 V~~a~pk~~ 271 (872)
|+++.++..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dnm_A 87 VQVARYGRR 95 (103)
T ss_dssp EEECSSCCS
T ss_pred EEECCcCCC
Confidence 999986544
No 72
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=6.1e-14 Score=126.96 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
....+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|+
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999884 35678999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002871 265 FSIPKD 270 (872)
Q Consensus 265 ~a~pk~ 270 (872)
|+.++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998764
No 73
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.51 E-value=2.6e-14 Score=132.78 Aligned_cols=82 Identities=23% Similarity=0.417 Sum_probs=74.5
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||.++++++|+++|++||.|++|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35679999999999999999999999999999876 3556899999999999999999999999999999999999
Q ss_pred CCCcccc
Q 002871 352 RPGGARR 358 (872)
Q Consensus 352 ~p~~~r~ 358 (872)
+++..+.
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpz_A 103 RSKNDSK 109 (115)
T ss_dssp CCSCCCC
T ss_pred CCCCcCC
Confidence 9876543
No 74
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.51 E-value=1.6e-13 Score=142.78 Aligned_cols=159 Identities=20% Similarity=0.211 Sum_probs=114.5
Q ss_pred ccCCCC-cchhHHHhhcccccccccCCCccccccc-cccCC-CCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccC
Q 002871 101 IGSLLP-DDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDS-GGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPIS 177 (872)
Q Consensus 101 iwNlLp-~~~davls~vadel~l~klfsd~~diee-dlf~s-~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~ 177 (872)
++||.+ ..+++.+.. +|+.++.|.+ .+... .|.++|+|+..+.+..++..++.... .+..+.+....
T Consensus 39 V~nLp~~~~te~~L~~---------~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~-~g~~l~v~~a~ 108 (229)
T 2adc_A 39 VSNLNPERVTPQSLFI---------LFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKL-HGKPIRITLSK 108 (229)
T ss_dssp EESCCTTTCCHHHHHH---------HHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBC-SSSBCEEECCS
T ss_pred EeCCCcccCCHHHHHH---------HHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeE-CCeEEEEEEec
Confidence 899998 644444444 5666677777 55443 57799999999999999876653221 11111111000
Q ss_pred CC---CCccc-----------------------CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeCCCc
Q 002871 178 NG---VGTVA-----------------------GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYG-DIRTLYTACKH 230 (872)
Q Consensus 178 n~---~~~~~-----------------------g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG-~I~~v~~~~ks 230 (872)
.. ..... ........++++|||+|||.++++++|+++|++|| .|..|++....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~ 188 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 188 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC
Confidence 00 00000 00001134579999999999999999999999999 99999886678
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCcccc-cceeeeeecCCC
Q 002871 231 RGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSIPK 269 (872)
Q Consensus 231 rG~AFVeF~d~e~A~~Ai~~Lng~~l~-gr~L~V~~a~pk 269 (872)
+|||||+|.+.++|.+|++.|+|..+. |++|.|.|+.++
T Consensus 189 ~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 189 RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999999999999999999999999 999999999753
No 75
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.51 E-value=4.5e-14 Score=126.98 Aligned_cols=78 Identities=23% Similarity=0.435 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
++++|||+|||.++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|.|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5789999999999999999999999999999984 35679999999999999999999999999999999999997
Q ss_pred CCC
Q 002871 268 PKD 270 (872)
Q Consensus 268 pk~ 270 (872)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 76
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.4e-14 Score=127.96 Aligned_cols=83 Identities=31% Similarity=0.402 Sum_probs=74.9
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeCC---CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP---HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~---~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
....++|||+|||..+++++|+++|++||.|..|++.. .++|||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 34568999999999999999999999999999998743 357999999999999999999999999999999999999
Q ss_pred CCcccc
Q 002871 353 PGGARR 358 (872)
Q Consensus 353 p~~~r~ 358 (872)
++..++
T Consensus 92 ~~~~~~ 97 (103)
T 2cqi_A 92 TPSSQK 97 (103)
T ss_dssp CTTCCC
T ss_pred CCcccc
Confidence 876543
No 77
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=6.6e-14 Score=125.24 Aligned_cols=81 Identities=23% Similarity=0.425 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45799999999999999999999999999999984 3567899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 002871 267 IPKDNP 272 (872)
Q Consensus 267 ~pk~~~ 272 (872)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 78
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.5e-14 Score=127.94 Aligned_cols=84 Identities=21% Similarity=0.427 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
....+.++|||+|||.++++++|+++|++||+|..|.+ ++.++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567899999999999999999999999999999874 4567899999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002871 264 HFSIPKDNP 272 (872)
Q Consensus 264 ~~a~pk~~~ 272 (872)
+|+.++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999876543
No 79
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.51 E-value=4.3e-14 Score=123.12 Aligned_cols=77 Identities=27% Similarity=0.450 Sum_probs=71.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002871 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
+.+|||+|||.++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.|+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 468999999999999999999999999999874 356799999999999999999999999999999999999986
Q ss_pred CC
Q 002871 269 KD 270 (872)
Q Consensus 269 k~ 270 (872)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 80
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9.2e-14 Score=126.44 Aligned_cols=83 Identities=18% Similarity=0.432 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC---CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~---~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
....+.++|||+|||+++++++|+++|++||.|..|++. ..++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 345678999999999999999999999999999999842 34689999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002871 266 SIPKDN 271 (872)
Q Consensus 266 a~pk~~ 271 (872)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987654
No 81
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-13 Score=125.73 Aligned_cols=84 Identities=21% Similarity=0.356 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC---CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~---~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
....+.++|||+|||+++++++|+++|++||.|..|++. ..++|||||+|.+.++|++|++.|++..|.|++|.|++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999999999852 34689999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002871 266 SIPKDNP 272 (872)
Q Consensus 266 a~pk~~~ 272 (872)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876543
No 82
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8.5e-14 Score=127.73 Aligned_cols=82 Identities=22% Similarity=0.312 Sum_probs=72.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhc--Ccccccceeeeeec
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFS 266 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Ln--g~~l~gr~L~V~~a 266 (872)
....++++|||+|||+++++++|+++|++||.|..|.+. +.+|||||+|.+.++|++|++.|+ +..+.|++|+|.|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML-KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 345678999999999999999999999999999999764 459999999999999999999875 57799999999999
Q ss_pred CCCCC
Q 002871 267 IPKDN 271 (872)
Q Consensus 267 ~pk~~ 271 (872)
.++..
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 86553
No 83
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=7.4e-14 Score=127.06 Aligned_cols=84 Identities=18% Similarity=0.391 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
....+.++|||+|||+++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|++..+.|++|.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567899999999999999999999999999999874 357899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002871 266 SIPKDNP 272 (872)
Q Consensus 266 a~pk~~~ 272 (872)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9876654
No 84
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.51 E-value=9.4e-15 Score=132.60 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=68.1
Q ss_pred cccceeeeccCCccchhhHhhhhcccCC--eEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCc----eeCCcEE
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGE--VKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRS----DINGKRI 346 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~--V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~----~l~Gr~L 346 (872)
.-.||||+|||+++|+++|+++|++||. |.+|++ +++++|||||+|.+.++|++|++.|||. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3468999999999999999999999995 567765 4567999999999999999999999997 5999999
Q ss_pred EEEecCC
Q 002871 347 KLEPSRP 353 (872)
Q Consensus 347 ~V~~s~p 353 (872)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999974
No 85
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.51 E-value=1.4e-13 Score=140.13 Aligned_cols=162 Identities=18% Similarity=0.266 Sum_probs=114.6
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccC------CCCcEEEEecChhhHHHhhhhhhcccCCcCCCccc
Q 002871 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFD------SGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAH 173 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf~------s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~ 173 (872)
++||.++.+++-+.. +|+.++.|.+ .+.. ..|.++|+|+..+.+..++..++-... .+..+.+
T Consensus 33 V~nLp~~~t~~~l~~---------~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~-~g~~l~v 102 (216)
T 2qfj_A 33 VGSIYYELGEDTIRQ---------AFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML-GGRNIKV 102 (216)
T ss_dssp EECCCTTCCHHHHHH---------HHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC-C-CCCEE
T ss_pred EECCCCCCCHHHHHH---------HHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee-CCeeEEE
Confidence 899999866555555 5555666666 4422 346689999999999999886652221 1111111
Q ss_pred cccCCCCCcc--cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHH
Q 002871 174 YPISNGVGTV--AGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAART 246 (872)
Q Consensus 174 ~~l~n~~~~~--~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~ 246 (872)
.......... ...........++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 103 GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp ECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 1100000000 0000001245689999999999999999999999999999984 35679999999999999999
Q ss_pred HHHHhcCcccccceeeeeecCCCCCC
Q 002871 247 AMRALQNKPLRRRKLDIHFSIPKDNP 272 (872)
Q Consensus 247 Ai~~Lng~~l~gr~L~V~~a~pk~~~ 272 (872)
|++.|++..|.|++|.|.|+.++..+
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHccCCEeCCcEEEEEEecCCCCC
Confidence 99999999999999999999876543
No 86
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=1.2e-13 Score=139.48 Aligned_cols=159 Identities=20% Similarity=0.212 Sum_probs=113.5
Q ss_pred ccCCCC-cchhHHHhhcccccccccCCCccccccc-cccCC-CCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccC
Q 002871 101 IGSLLP-DDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDS-GGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPIS 177 (872)
Q Consensus 101 iwNlLp-~~~davls~vadel~l~klfsd~~diee-dlf~s-~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~ 177 (872)
++||.+ ..+++-+.. +|+.++.|.+ .+... .|.++|+|+..+.+..++..++.... .+..+.+....
T Consensus 8 v~nlp~~~~~~~~l~~---------~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~g~~l~v~~a~ 77 (198)
T 1qm9_A 8 VSNLNPERVTPQSLFI---------LFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKL-HGKPIRITLSK 77 (198)
T ss_dssp EECCCSSSCCHHHHHH---------HHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCC-SSCCCEEEECC
T ss_pred EeCCCcccCCHHHHHH---------HHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCee-cCeEEEEEEec
Confidence 788888 544444444 5566667777 44433 46799999999999999886653222 11111111000
Q ss_pred CC---CCcc-----------------------cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeCCCc
Q 002871 178 NG---VGTV-----------------------AGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYG-DIRTLYTACKH 230 (872)
Q Consensus 178 n~---~~~~-----------------------~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG-~I~~v~~~~ks 230 (872)
.. .... .........++++|||+|||..+++++|+++|++|| .|..|++....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~ 157 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 157 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC
Confidence 00 0000 000001124589999999999999999999999999 99999886677
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCcccc-cceeeeeecCCC
Q 002871 231 RGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSIPK 269 (872)
Q Consensus 231 rG~AFVeF~d~e~A~~Ai~~Lng~~l~-gr~L~V~~a~pk 269 (872)
+|||||+|.+.++|.+|+..|+|..+. |++|.|.|+.++
T Consensus 158 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 158 RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999999999999999999999999 999999998753
No 87
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.5e-14 Score=129.88 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcc--cccceeeeeecC
Q 002871 191 EHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSI 267 (872)
Q Consensus 191 e~~srtLfV~NLP~-~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~--l~gr~L~V~~a~ 267 (872)
..++++|||+|||+ ++++++|+++|++||.|.+|++. +.+|||||+|.+.++|++|++.|++.. |.|++|+|.|+.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 45789999999999 99999999999999999999864 567999999999999999999998754 999999999997
Q ss_pred CCC
Q 002871 268 PKD 270 (872)
Q Consensus 268 pk~ 270 (872)
...
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 544
No 88
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.51 E-value=5.5e-14 Score=130.47 Aligned_cols=83 Identities=18% Similarity=0.371 Sum_probs=75.1
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
....++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345789999999999999999999999999999976 345689999999999999999999999999999999999
Q ss_pred cCCCcccc
Q 002871 351 SRPGGARR 358 (872)
Q Consensus 351 s~p~~~r~ 358 (872)
++++..+.
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 99876543
No 89
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.51 E-value=2.5e-14 Score=127.60 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=69.5
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
...-|||+||++.+|+++|+++|.+||+|+++++. .++|||||+|.+.++|.+|++.||+..+.|++|+|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 35679999999999999999999999999999985 479999999999999999999999999999999999983
No 90
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=8.4e-14 Score=123.74 Aligned_cols=79 Identities=27% Similarity=0.404 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCC
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 270 (872)
..+.++|||+|||.++++++|+++|++||+|..|++. +|||||+|.+.++|++|++.|++..+.|++|.|+|+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 3567999999999999999999999999999999865 8999999999999999999999999999999999998765
Q ss_pred CC
Q 002871 271 NP 272 (872)
Q Consensus 271 ~~ 272 (872)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 91
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.9e-14 Score=128.80 Aligned_cols=81 Identities=17% Similarity=0.439 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...+.++|||+|||.++++++|+++|++||+|..|.+ ++.++|||||+|.+.++|++|++.|++..+.|++|.|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3456799999999999999999999999999999984 36679999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002871 265 FSIPKD 270 (872)
Q Consensus 265 ~a~pk~ 270 (872)
|+.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997654
No 92
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.6e-14 Score=126.24 Aligned_cols=80 Identities=25% Similarity=0.364 Sum_probs=73.4
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
..++|||+|||.++++++|+++|++||.|..|++. ++++|||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45789999999999999999999999999999763 4568999999999999999999999999999999999998
Q ss_pred CCccc
Q 002871 353 PGGAR 357 (872)
Q Consensus 353 p~~~r 357 (872)
++..+
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87654
No 93
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.8e-14 Score=126.86 Aligned_cols=80 Identities=23% Similarity=0.444 Sum_probs=73.4
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||..+++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++ |++..|.|++|+|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999873 4568999999999999999999 9999999999999999
Q ss_pred CCCccc
Q 002871 352 RPGGAR 357 (872)
Q Consensus 352 ~p~~~r 357 (872)
+++..+
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 987654
No 94
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.50 E-value=6.3e-14 Score=130.20 Aligned_cols=84 Identities=15% Similarity=0.341 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
....+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556799999999999999999999999999998874 4678899999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002871 264 HFSIPKDNP 272 (872)
Q Consensus 264 ~~a~pk~~~ 272 (872)
+|+.++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999876543
No 95
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.6e-14 Score=126.63 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=72.8
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeC--CcEEEEEecCCCc
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDIN--GKRIKLEPSRPGG 355 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~--Gr~L~V~~s~p~~ 355 (872)
..++|||+|||.++++++|+++|++||.|..|++... ++||||+|.+.++|++|++.|||..|. |++|+|++++++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 4579999999999999999999999999999998644 899999999999999999999999999 9999999999875
Q ss_pred c
Q 002871 356 A 356 (872)
Q Consensus 356 ~ 356 (872)
.
T Consensus 95 ~ 95 (97)
T 1why_A 95 S 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 96
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.5e-14 Score=128.10 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=72.6
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHh--CCceeCCcEEEEEecCCC
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL--NRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~L--nG~~l~Gr~L~V~~s~p~ 354 (872)
...++|||+|||+++++++|+++|++||.|.+|++.. .+|||||+|.+.++|.+|++.| ++..|.|++|+|.|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 3567999999999999999999999999999998864 4899999999999999999987 567899999999999987
Q ss_pred cccc
Q 002871 355 GARR 358 (872)
Q Consensus 355 ~~r~ 358 (872)
..+.
T Consensus 92 ~~~~ 95 (101)
T 2cq1_A 92 ELKT 95 (101)
T ss_dssp SCCC
T ss_pred cCcC
Confidence 6443
No 97
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=6.8e-14 Score=128.74 Aligned_cols=82 Identities=20% Similarity=0.378 Sum_probs=75.1
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhC------CceeCCcE
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALN------RSDINGKR 345 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~Ln------G~~l~Gr~ 345 (872)
...++|||+|||+++++++|+++|++||.|..|++. +.++|||||+|.+.++|.+|++.|| |..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 456799999999999999999999999999999874 4678999999999999999999999 99999999
Q ss_pred EEEEecCCCcccc
Q 002871 346 IKLEPSRPGGARR 358 (872)
Q Consensus 346 L~V~~s~p~~~r~ 358 (872)
|+|.++.++..+.
T Consensus 93 l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 93 LKVDLAVTRDEAA 105 (111)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEECCCCccCC
Confidence 9999999876543
No 98
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.50 E-value=5e-14 Score=126.70 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=73.3
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002871 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
.++|||+|||..+++++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..|+|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4689999999999999999999999999999873 45689999999999999999999999999999999999998
Q ss_pred Cccc
Q 002871 354 GGAR 357 (872)
Q Consensus 354 ~~~r 357 (872)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7654
No 99
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1e-13 Score=127.55 Aligned_cols=84 Identities=20% Similarity=0.434 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC-----CCcccEEEEEeCCHHHHHHHHHHhc------Ccccc
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA-----CKHRGFVMISYYDIRAARTAMRALQ------NKPLR 257 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~-----~ksrG~AFVeF~d~e~A~~Ai~~Ln------g~~l~ 257 (872)
....+.++|||+|||+++++++|+++|++||+|..|++. +.++|||||+|.+.++|++|++.|+ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345678999999999999999999999999999999843 5689999999999999999999999 99999
Q ss_pred cceeeeeecCCCCCC
Q 002871 258 RRKLDIHFSIPKDNP 272 (872)
Q Consensus 258 gr~L~V~~a~pk~~~ 272 (872)
|++|.|.|+.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999876543
No 100
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.50 E-value=4.4e-14 Score=123.65 Aligned_cols=75 Identities=27% Similarity=0.449 Sum_probs=69.8
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
..++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|+|++|+|++++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4679999999999999999999999999999976 34468999999999999999999999999999999999985
No 101
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.6e-14 Score=126.58 Aligned_cols=81 Identities=25% Similarity=0.443 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC--------CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~--------~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
.+.++|||+|||+++++++|+++|++||+|..|.+. ++++|||||+|.+.++|++|++.|++..+.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 467999999999999999999999999999998742 267899999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002871 264 HFSIPKDNP 272 (872)
Q Consensus 264 ~~a~pk~~~ 272 (872)
+++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876544
No 102
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.3e-14 Score=126.89 Aligned_cols=79 Identities=24% Similarity=0.407 Sum_probs=72.5
Q ss_pred cccceeeeccCCccchhhHh----hhhcccCCeEEEEeCCC--CccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 278 NQGTLVVFNLDASVSNDDLR----QIFGAYGEVKEIRETPH--KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~----e~Fs~fG~V~~vri~~~--skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...+|||+|||+.+++++|+ ++|++||.|.+|++... .++||||+|.+.++|++|++.|||..|+|++|+|+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 45789999999999999999 99999999999988532 2899999999999999999999999999999999999
Q ss_pred CCCcc
Q 002871 352 RPGGA 356 (872)
Q Consensus 352 ~p~~~ 356 (872)
+++..
T Consensus 88 ~~~~~ 92 (96)
T 2dgx_A 88 TGASG 92 (96)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 88754
No 103
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.50 E-value=6.1e-14 Score=122.71 Aligned_cols=77 Identities=25% Similarity=0.465 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
..+.++|||+|||+++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++.|++..+.|++|.|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356799999999999999999999999999999974 355799999999999999999999999999999999998
Q ss_pred cC
Q 002871 266 SI 267 (872)
Q Consensus 266 a~ 267 (872)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 104
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.50 E-value=7e-14 Score=136.12 Aligned_cols=128 Identities=19% Similarity=0.212 Sum_probs=94.8
Q ss_pred CcEEEEecChhhHHHhhhhh-hcccCCcCCCccccccCCC-------CCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHH
Q 002871 141 GGMELEFEPHESLSIGVSKL-NISDGIAGTGIAHYPISNG-------VGTVAGEHPYGEHPSRTLFVRNINSNVEDLELR 212 (872)
Q Consensus 141 Ggv~V~~d~~esa~~a~~k~-~~~~~~~~ngv~~~~l~n~-------~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr 212 (872)
|...+++...+.+.+++..+ +...... .+........ .............+.++|||+|||+++++++|+
T Consensus 14 G~~~ve~~~~~~A~~a~~~~~ng~~~~G--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~ 91 (150)
T 2i2y_A 14 GETTTEAVDAATAEKVFKQYANDNGVDG--EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELE 91 (150)
T ss_dssp EEEEEECSSHHHHTTTHHHHHHHHTCCC--EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHH
T ss_pred ccceeeecCHHHHHHHHHHHhcCCCCCC--ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 34566788888888887766 3222211 1111100000 000011223345678999999999999999999
Q ss_pred HHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCC
Q 002871 213 SLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (872)
Q Consensus 213 ~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 270 (872)
++|++||.|.+|++...++|||||+|.+.++|++|+..|+|..+.|++|.|.|+.++.
T Consensus 92 ~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 92 RAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999876689999999999999999999999999999999999997653
No 105
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=4.6e-14 Score=125.42 Aligned_cols=78 Identities=27% Similarity=0.422 Sum_probs=72.9
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
...++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..|.|++|+|++++++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 356799999999999999999999999999999986 79999999999999999999999999999999999988765
Q ss_pred c
Q 002871 357 R 357 (872)
Q Consensus 357 r 357 (872)
+
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 106
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.3e-14 Score=128.07 Aligned_cols=80 Identities=20% Similarity=0.360 Sum_probs=72.9
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeC--------CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~--------~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
..++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..|+|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45789999999999999999999999999999763 1567999999999999999999999999999999999
Q ss_pred ecCCCccc
Q 002871 350 PSRPGGAR 357 (872)
Q Consensus 350 ~s~p~~~r 357 (872)
+++++..+
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99887644
No 107
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8.7e-14 Score=124.21 Aligned_cols=76 Identities=32% Similarity=0.455 Sum_probs=70.5
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 456799999999999999999999999999999874 456899999999999999999999999999999999998
Q ss_pred C
Q 002871 352 R 352 (872)
Q Consensus 352 ~ 352 (872)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 108
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.50 E-value=3.9e-14 Score=124.62 Aligned_cols=79 Identities=24% Similarity=0.411 Sum_probs=71.9
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCC-----C-CccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP-----H-KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~-----~-skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
..++|||+|||.++++++|+++|++||.|.+|++.. . ++|||||+|.+.++|++|++.|||..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999998632 2 6899999999999999999999999999999999999
Q ss_pred CCCcc
Q 002871 352 RPGGA 356 (872)
Q Consensus 352 ~p~~~ 356 (872)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 109
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=9.1e-14 Score=124.01 Aligned_cols=81 Identities=22% Similarity=0.396 Sum_probs=73.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
....+.++|||+|||+++++++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|++..+.|++|.|+++.+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 345678999999999999999999999999999999864 56999999999999999999999999999999999987
Q ss_pred CCCC
Q 002871 269 KDNP 272 (872)
Q Consensus 269 k~~~ 272 (872)
+...
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6543
No 110
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.6e-14 Score=126.64 Aligned_cols=82 Identities=21% Similarity=0.370 Sum_probs=74.4
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeCC---CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP---HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~---~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
....++|||+|||.++++++|+++|++||.|..|++.. .++|||||+|.+.++|++|++.|||..|+|++|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34568999999999999999999999999999998742 358999999999999999999999999999999999999
Q ss_pred CCccc
Q 002871 353 PGGAR 357 (872)
Q Consensus 353 p~~~r 357 (872)
++..+
T Consensus 92 ~~~~~ 96 (103)
T 2cq3_A 92 ARVMT 96 (103)
T ss_dssp SSCCC
T ss_pred cCCCC
Confidence 87644
No 111
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.50 E-value=4.9e-14 Score=129.80 Aligned_cols=81 Identities=26% Similarity=0.395 Sum_probs=74.2
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||..+++++|+++|++||.|..|++. +.++|||||+|.+.++|.+|++.|||..|+|++|+|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 456799999999999999999999999999999873 456899999999999999999999999999999999999
Q ss_pred CCCccc
Q 002871 352 RPGGAR 357 (872)
Q Consensus 352 ~p~~~r 357 (872)
+++..+
T Consensus 104 ~~~~~~ 109 (110)
T 1oo0_B 104 FVKGPK 109 (110)
T ss_dssp EESSCC
T ss_pred ccCCCC
Confidence 887654
No 112
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.50 E-value=1.5e-13 Score=125.36 Aligned_cols=82 Identities=20% Similarity=0.330 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCccccc---ceeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR---RKLDI 263 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~g---r~L~V 263 (872)
..+.++|||+|||+++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|++..+.+ ++|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 356899999999999999999999999999999874 35568999999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 002871 264 HFSIPKDNP 272 (872)
Q Consensus 264 ~~a~pk~~~ 272 (872)
.|+.++...
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876543
No 113
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=3e-14 Score=127.88 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=75.6
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
....++|||+|||..+++++|+++|++||.|..+..++.++|||||+|.+.++|.+|++.|+|..|+|++|+|++++++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 34568999999999999999999999999998887777889999999999999999999999999999999999998876
Q ss_pred cc
Q 002871 356 AR 357 (872)
Q Consensus 356 ~r 357 (872)
.+
T Consensus 93 ~~ 94 (96)
T 1fjc_A 93 GT 94 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 114
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-13 Score=124.18 Aligned_cols=79 Identities=27% Similarity=0.469 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccc--cceeeeeecCC
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIP 268 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~--gr~L~V~~a~p 268 (872)
..+.++|||+|||+++++++|+++|++||+|..|.+.. .+|||||+|.+.++|++|++.|++..+. |++|.|+|+.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 45679999999999999999999999999999998653 4899999999999999999999999999 99999999987
Q ss_pred CC
Q 002871 269 KD 270 (872)
Q Consensus 269 k~ 270 (872)
+.
T Consensus 93 ~~ 94 (97)
T 1why_A 93 GP 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 115
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.2e-14 Score=130.12 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=70.3
Q ss_pred cccceeeeccCC-ccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCc--eeCCcEEEEEecCCC
Q 002871 278 NQGTLVVFNLDA-SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRS--DINGKRIKLEPSRPG 354 (872)
Q Consensus 278 ~~~tLfV~NLp~-~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~--~l~Gr~L~V~~s~p~ 354 (872)
..++|||+|||+ ++++++|+++|++||.|.+|++. +.++||||+|.+.++|.+|++.|++. .|.|++|+|.++++.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 467899999999 99999999999999999999986 35699999999999999999999864 599999999999865
Q ss_pred c
Q 002871 355 G 355 (872)
Q Consensus 355 ~ 355 (872)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 116
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.8e-14 Score=126.54 Aligned_cols=82 Identities=22% Similarity=0.449 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
..+.++|||+|||+++++++|+++|++||+|..|++ ++.++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456899999999999999999999999999999985 345789999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002871 266 SIPKDNP 272 (872)
Q Consensus 266 a~pk~~~ 272 (872)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 117
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=4.2e-14 Score=128.72 Aligned_cols=81 Identities=30% Similarity=0.456 Sum_probs=74.1
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 356899999999999999999999999999999873 556899999999999999999999999999999999999
Q ss_pred CCCccc
Q 002871 352 RPGGAR 357 (872)
Q Consensus 352 ~p~~~r 357 (872)
++...+
T Consensus 91 ~~~~~~ 96 (103)
T 2dnm_A 91 RYGRRD 96 (103)
T ss_dssp SSCCSC
T ss_pred CcCCCC
Confidence 876543
No 118
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.6e-14 Score=129.65 Aligned_cols=80 Identities=25% Similarity=0.404 Sum_probs=73.3
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||..+++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 456789999999999999999999999999999763 556899999999999999999999999999999999999
Q ss_pred CCCcc
Q 002871 352 RPGGA 356 (872)
Q Consensus 352 ~p~~~ 356 (872)
+++..
T Consensus 101 ~~~~~ 105 (106)
T 1p27_B 101 FVRGP 105 (106)
T ss_dssp EESSC
T ss_pred cCCCC
Confidence 87653
No 119
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=8.6e-14 Score=124.24 Aligned_cols=78 Identities=24% Similarity=0.426 Sum_probs=71.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3457899999999999999999999999999999985 25678999999999999999999999999999999999
Q ss_pred ecC
Q 002871 265 FSI 267 (872)
Q Consensus 265 ~a~ 267 (872)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 973
No 120
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.49 E-value=7.4e-14 Score=127.37 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=74.3
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCC---cEEEEE
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDING---KRIKLE 349 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~G---r~L~V~ 349 (872)
...++|||+|||..+++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.| ++|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 356899999999999999999999999999999763 4458999999999999999999999999998 999999
Q ss_pred ecCCCcccc
Q 002871 350 PSRPGGARR 358 (872)
Q Consensus 350 ~s~p~~~r~ 358 (872)
+++++..++
T Consensus 93 ~a~~~~~~~ 101 (105)
T 2dnh_A 93 FADTDKESG 101 (105)
T ss_dssp ESCSSCCCS
T ss_pred ECccCcccC
Confidence 999876554
No 121
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.7e-14 Score=128.03 Aligned_cols=82 Identities=24% Similarity=0.423 Sum_probs=74.7
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||..+++++|+++|++||.|..|++. ++++|||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 356799999999999999999999999999999873 457899999999999999999999999999999999999
Q ss_pred CCCcccc
Q 002871 352 RPGGARR 358 (872)
Q Consensus 352 ~p~~~r~ 358 (872)
+++..+.
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 122
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.49 E-value=1.2e-13 Score=138.51 Aligned_cols=157 Identities=18% Similarity=0.303 Sum_probs=106.5
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccCC------CCcEEEEecChhhHHHhhhhhhcccCCcCCCccc
Q 002871 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDS------GGGMELEFEPHESLSIGVSKLNISDGIAGTGIAH 173 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf~s------~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~ 173 (872)
++||.++.+++-+.. +|+.++.|.+ .+... .|.++|+|...+.+..++...... ..+..+.+
T Consensus 18 V~nLp~~~te~~l~~---------~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~--~~g~~l~v 86 (196)
T 1l3k_A 18 IGGLSFETTDESLRS---------HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHK--VDGRVVEP 86 (196)
T ss_dssp EESCCTTCCHHHHHH---------HHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCE--ETTEECEE
T ss_pred EeCCCCCCCHHHHHH---------HHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCE--ECCEEeee
Confidence 999999865555555 5566666666 44321 345899999999999988652110 01111111
Q ss_pred cccCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHH
Q 002871 174 YPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAM 248 (872)
Q Consensus 174 ~~l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai 248 (872)
.. .. .......+....+.++|||+|||+++++++|+++|++||.|..|.+ ++.++|||||+|.+.++|.+|+
T Consensus 87 ~~-~~--~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 87 KR-AV--SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp EE-CC--C-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred ec-cc--CcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 00 00 0111112223446699999999999999999999999999999874 4567999999999999999999
Q ss_pred HHhcCcccccceeeeeecCCCCCC
Q 002871 249 RALQNKPLRRRKLDIHFSIPKDNP 272 (872)
Q Consensus 249 ~~Lng~~l~gr~L~V~~a~pk~~~ 272 (872)
.. ++..|.|+.|.|.|+.++...
T Consensus 164 ~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 164 IQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HC-SCCEETTEECEEEECC-----
T ss_pred Hh-CCcEECCEEEEEEecCChhHh
Confidence 85 899999999999999887654
No 123
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=3.3e-14 Score=132.74 Aligned_cols=78 Identities=19% Similarity=0.154 Sum_probs=71.4
Q ss_pred cccceeeeccCCccchhhHhhhhcccC-CeEEEEeC-CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRET-PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG-~V~~vri~-~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
...+|||+|||+++++++|+++|++|| .|..+++. .+++|||||+|.+.++|++|++.|||..|+|++|+|++++...
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 357899999999999999999999999 99999884 5689999999999999999999999999999999999997653
No 124
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=8.3e-14 Score=124.44 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...+.++|||+|||+++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++.|++..+.|++|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999984 35778999999999999999999999999999999999
Q ss_pred ecCC
Q 002871 265 FSIP 268 (872)
Q Consensus 265 ~a~p 268 (872)
|+..
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9853
No 125
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.9e-14 Score=126.92 Aligned_cols=82 Identities=24% Similarity=0.447 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
..+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 457899999999999999999999999999999984 355899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002871 266 SIPKDNP 272 (872)
Q Consensus 266 a~pk~~~ 272 (872)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 126
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.49 E-value=3.8e-14 Score=130.77 Aligned_cols=96 Identities=19% Similarity=0.301 Sum_probs=81.1
Q ss_pred ccceeeeeecCCCCCCCCccccccceeeeccCCc-cchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHH
Q 002871 257 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRA 335 (872)
Q Consensus 257 ~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~-~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~ 335 (872)
.|.+|.+..+.+.... ......++|||+||+.. +++++|+++|++||.|..|++ +++||||+|.+.++|++|++.
T Consensus 6 ~g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CSCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHH
T ss_pred CCcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHH
Confidence 4566777766543322 22234579999999999 999999999999999999998 689999999999999999999
Q ss_pred hCCceeCCcEEEEEecCCCcc
Q 002871 336 LNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 336 LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
|||..|+|++|+|+++++...
T Consensus 82 l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 82 ENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HTTCEETTEECCEEESCCCCS
T ss_pred cCCCEECCeEEEEEECCCCCC
Confidence 999999999999999985443
No 127
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=8e-14 Score=124.38 Aligned_cols=79 Identities=25% Similarity=0.384 Sum_probs=72.9
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
....++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..|.|++|+|++++++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3456899999999999999999999999999999986 5699999999999999999999999999999999998875
Q ss_pred cc
Q 002871 356 AR 357 (872)
Q Consensus 356 ~r 357 (872)
..
T Consensus 84 ~~ 85 (92)
T 2dgt_A 84 RT 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 128
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.49 E-value=8.1e-14 Score=128.84 Aligned_cols=82 Identities=22% Similarity=0.438 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44567899999999999999999999999999999874 3567899999999999999999999999999999999
Q ss_pred eecCCCC
Q 002871 264 HFSIPKD 270 (872)
Q Consensus 264 ~~a~pk~ 270 (872)
+++.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9997653
No 129
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.48 E-value=1.1e-13 Score=126.34 Aligned_cols=83 Identities=24% Similarity=0.467 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCccc---ccce
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL---RRRK 260 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l---~gr~ 260 (872)
..+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+ .+++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34567899999999999999999999999999999984 356889999999999999999999999988 8999
Q ss_pred eeeeecCCCCC
Q 002871 261 LDIHFSIPKDN 271 (872)
Q Consensus 261 L~V~~a~pk~~ 271 (872)
|.|.|+.++..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987654
No 130
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.4e-14 Score=126.07 Aligned_cols=81 Identities=20% Similarity=0.431 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE-Ee-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTL-YT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v-~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
.+.++|||+|||+++++++|+++|++||.|..| ++ ++.++|||||+|.+.++|++|++.|++..+.|++|.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999877 63 355789999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002871 266 SIPKDNP 272 (872)
Q Consensus 266 a~pk~~~ 272 (872)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 131
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.48 E-value=5e-14 Score=125.26 Aligned_cols=80 Identities=20% Similarity=0.252 Sum_probs=73.5
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe---CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri---~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
..++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|||..|+|++|+|+++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4679999999999999999999999999999976 3456899999999999999999999999999999999999987
Q ss_pred ccc
Q 002871 355 GAR 357 (872)
Q Consensus 355 ~~r 357 (872)
...
T Consensus 87 ~~~ 89 (92)
T 2dgv_A 87 SGP 89 (92)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 132
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.48 E-value=4.4e-14 Score=130.67 Aligned_cols=80 Identities=21% Similarity=0.417 Sum_probs=73.0
Q ss_pred ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002871 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
.....++|||+||+.++++++|+++|++||.|+.|++. +|||||+|.+.++|++|++.|||..|+|++|+|++++++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 34567899999999999999999999999999999886 899999999999999999999999999999999999987
Q ss_pred ccc
Q 002871 355 GAR 357 (872)
Q Consensus 355 ~~r 357 (872)
..+
T Consensus 104 ~~r 106 (108)
T 2jvo_A 104 AKR 106 (108)
T ss_dssp C--
T ss_pred CCC
Confidence 654
No 133
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=8.2e-14 Score=123.78 Aligned_cols=78 Identities=29% Similarity=0.431 Sum_probs=72.4
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
...++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..|.|++|+|++++++..
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 456799999999999999999999999999999986 56999999999999999999999999999999999988754
Q ss_pred c
Q 002871 357 R 357 (872)
Q Consensus 357 r 357 (872)
+
T Consensus 84 ~ 84 (90)
T 2dnp_A 84 K 84 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 134
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.48 E-value=1.3e-14 Score=165.60 Aligned_cols=146 Identities=23% Similarity=0.353 Sum_probs=103.5
Q ss_pred HHHHhhccCCeEEEEe-------CCCcccEE-----EEEeCCHHHHHHHHHHhcCcccccc-------------eeeeee
Q 002871 211 LRSLFEQYGDIRTLYT-------ACKHRGFV-----MISYYDIRAARTAMRALQNKPLRRR-------------KLDIHF 265 (872)
Q Consensus 211 Lr~lFs~fG~I~~v~~-------~~ksrG~A-----FVeF~d~e~A~~Ai~~Lng~~l~gr-------------~L~V~~ 265 (872)
|..||.++|+|..|.. .....+|+ |+.|....++..++..++......+ ...+..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7889999999987731 11223344 7778776555444432222111111 001111
Q ss_pred cCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCce
Q 002871 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSD 340 (872)
Q Consensus 266 a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~ 340 (872)
..+...+........+|||+||++.+|+++|+++|++||.|+.|.+ +++++|||||+|.+.++|.+||+.|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 1222222223334679999999999999999999999999999977 45679999999999999999999999999
Q ss_pred eCCcEEEEEecCCCcc
Q 002871 341 INGKRIKLEPSRPGGA 356 (872)
Q Consensus 341 l~Gr~L~V~~s~p~~~ 356 (872)
|.|+.|.|.++.++..
T Consensus 169 i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 169 IDGRRVLVDVERGRTV 184 (437)
T ss_pred ECCEEEEEEEeCCCCC
Confidence 9999999999987643
No 135
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=4.3e-14 Score=131.33 Aligned_cols=77 Identities=13% Similarity=0.275 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
+++.++|||+|||+++++++|+++|++||.|..|.+. +++|||||+|.+.++|++|++.|+|..+.|++|+|+|+..
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 4457899999999999999999999999999999764 6899999999999999999999999999999999999864
No 136
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.1e-14 Score=128.44 Aligned_cols=82 Identities=24% Similarity=0.515 Sum_probs=74.3
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999874 346899999999999999999999999999999999999
Q ss_pred CCCcccc
Q 002871 352 RPGGARR 358 (872)
Q Consensus 352 ~p~~~r~ 358 (872)
+++...+
T Consensus 90 ~~~~~~~ 96 (102)
T 1x5s_A 90 GKSSDNR 96 (102)
T ss_dssp ECCCCCC
T ss_pred CCCCCCC
Confidence 8876543
No 137
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.48 E-value=7.4e-14 Score=124.93 Aligned_cols=77 Identities=21% Similarity=0.285 Sum_probs=71.0
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
...++|||+|||..+++++|+++|++||.|..|++. ++++|||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 356899999999999999999999999999999763 3458999999999999999999999999999999999987
Q ss_pred C
Q 002871 353 P 353 (872)
Q Consensus 353 p 353 (872)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 138
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=128.21 Aligned_cols=80 Identities=14% Similarity=0.321 Sum_probs=72.7
Q ss_pred cccccceeeeccCCccchhhHh---hhhcccCCeEEEEeCC--------CCccEEEEEECCHHHHHHHHHHhCCceeCCc
Q 002871 276 DVNQGTLVVFNLDASVSNDDLR---QIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALRALNRSDINGK 344 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~---e~Fs~fG~V~~vri~~--------~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr 344 (872)
....++|||+|||+++++++|+ ++|++||.|..|++.. .++|||||+|.+.++|++|++.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456799999999999999999 9999999999998742 3458999999999999999999999999999
Q ss_pred EEEEEecCCCc
Q 002871 345 RIKLEPSRPGG 355 (872)
Q Consensus 345 ~L~V~~s~p~~ 355 (872)
+|+|++++++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998875
No 139
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=7e-14 Score=128.92 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=71.7
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCc--eeCCcEEEEEecCCC
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRS--DINGKRIKLEPSRPG 354 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~--~l~Gr~L~V~~s~p~ 354 (872)
...++|||+|||+++++++|+++|++||.|.+|++.. .+|||||+|.+.++|.+|++.|++. .|.|++|+|+|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 3467999999999999999999999999999998754 5899999999999999999999764 599999999999876
Q ss_pred ccc
Q 002871 355 GAR 357 (872)
Q Consensus 355 ~~r 357 (872)
..+
T Consensus 92 ~~~ 94 (104)
T 1wex_A 92 RIT 94 (104)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 140
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.48 E-value=6.6e-14 Score=124.93 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
.+.-|||+||++.+||++|+++|.+||+|.++++. .++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 47899999999999999999999999999999863 58999999999999999999999999999999999987
No 141
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.48 E-value=1.1e-13 Score=125.49 Aligned_cols=76 Identities=28% Similarity=0.399 Sum_probs=71.4
Q ss_pred ccccceeeeccCC-ccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002871 277 VNQGTLVVFNLDA-SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 277 ~~~~tLfV~NLp~-~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
...++|||+||+. ++++++|+++|++||.|..|++. +|||||+|.+.++|.+|++.|||..++|++|+|++++++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 3568999999998 99999999999999999999984 8999999999999999999999999999999999998754
No 142
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.6e-13 Score=125.23 Aligned_cols=82 Identities=16% Similarity=0.360 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC------CCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~------~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
....+.++|||+|||+++++++|+++|++|| |..|.+. ++++|||||+|.+.++|++|+ .|++..|.|++|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3456779999999999999999999999999 9999842 677999999999999999999 8999999999999
Q ss_pred eeecCCCCCC
Q 002871 263 IHFSIPKDNP 272 (872)
Q Consensus 263 V~~a~pk~~~ 272 (872)
|+++.++...
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 143
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=8.4e-14 Score=147.75 Aligned_cols=104 Identities=20% Similarity=0.309 Sum_probs=95.9
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
....++|||+|||+++|+++|+++|++||.|..|++. +++|||||+|.+.++|.+|+..|+|..|.|+.|+|.++.+..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 97 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGA 97 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCC
Confidence 3456789999999999999999999999999999884 568999999999999999999999999999999999998754
Q ss_pred ccchhhhcCChhccHHHHHHhhhccCC
Q 002871 356 ARRNLMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 356 ~r~~~~~ql~~~~tq~~l~~~f~~~Gs 382 (872)
..++.+++..+++++++.+|.+||.
T Consensus 98 --~l~v~nl~~~~t~~~l~~~F~~~G~ 122 (261)
T 3sde_A 98 --ALTVKNLSPVVSNELLEQAFSQFGP 122 (261)
T ss_dssp --EEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred --cccccCCCCCCCHHHHHHHHHhcCC
Confidence 5689999999999999999999984
No 144
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.48 E-value=7.7e-14 Score=128.96 Aligned_cols=81 Identities=26% Similarity=0.380 Sum_probs=73.7
Q ss_pred ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002871 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
.....++|||+|||..+++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|+|..|+|++|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999763 4568999999999999999999999999999999999
Q ss_pred ecCCCc
Q 002871 350 PSRPGG 355 (872)
Q Consensus 350 ~s~p~~ 355 (872)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998864
No 145
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.7e-14 Score=126.96 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=72.9
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC------CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~------~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
....+|||+|||.++++++|+++|++|| |..|++. ++++|||||+|.+.++|++|+ .|||..|.|++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 9999874 566899999999999999999 8999999999999999
Q ss_pred cCCCcccc
Q 002871 351 SRPGGARR 358 (872)
Q Consensus 351 s~p~~~r~ 358 (872)
++++..+.
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 99876543
No 146
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=6e-14 Score=125.91 Aligned_cols=82 Identities=22% Similarity=0.358 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
.+.+.++|||+|||+++++++|+++|++||.|..+..+++++|||||+|.+.++|++|++.|++..+.|++|.|+++.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 45678999999999999999999999999999888667889999999999999999999999999999999999999765
Q ss_pred CC
Q 002871 270 DN 271 (872)
Q Consensus 270 ~~ 271 (872)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 147
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=121.21 Aligned_cols=78 Identities=22% Similarity=0.407 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHh-cCcccccceeeeeecC
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSI 267 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~L-ng~~l~gr~L~V~~a~ 267 (872)
....+.++|||+|||.++++++|+++|++||.|..|++. +++|||||+|.+.++|++|++.| ++..+.|++|.|+|++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 345678999999999999999999999999999999864 47899999999999999999999 9999999999999973
No 148
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.7e-13 Score=123.99 Aligned_cols=77 Identities=26% Similarity=0.396 Sum_probs=71.9
Q ss_pred ccccceeeeccCCccchhhHhhhhccc--CCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~f--G~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
...++|||+|||..+++++|+++|++| |.|..|++. ++||||+|.+.++|++|++.|||..|.|++|+|++++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 356799999999999999999999999 999999874 789999999999999999999999999999999999987
Q ss_pred cc
Q 002871 355 GA 356 (872)
Q Consensus 355 ~~ 356 (872)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 149
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.7e-14 Score=128.54 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=74.0
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCccc
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 357 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r 357 (872)
..++|||+|||..+++++|+++|++||.|..|++... +|||||+|.+.++|.+|++.|+|..|.|++|+|.+++++...
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 4679999999999999999999999999999998644 899999999999999999999999999999999999987654
Q ss_pred c
Q 002871 358 R 358 (872)
Q Consensus 358 ~ 358 (872)
+
T Consensus 103 ~ 103 (109)
T 1x4g_A 103 T 103 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 150
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=125.19 Aligned_cols=81 Identities=30% Similarity=0.502 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
...+.++|||+|||+++++++|+++|++||+|..|++. +.+|||||+|.+.++|++|++.|++..+.|++|.|+|+.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 34567999999999999999999999999999999764 56999999999999999999999999999999999999775
Q ss_pred CC
Q 002871 270 DN 271 (872)
Q Consensus 270 ~~ 271 (872)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 151
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.48 E-value=1.6e-14 Score=128.69 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=65.7
Q ss_pred cceeeeccCCccchhhHhhhhcccC--CeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 280 GTLVVFNLDASVSNDDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG--~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
.+|||+||++++++++|+++|++|| .|.+|++ +++++|||||+|.+.++|++|++.|||..|+|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 8988875 45678999999999999999999999999999999999998
Q ss_pred CCcc
Q 002871 353 PGGA 356 (872)
Q Consensus 353 p~~~ 356 (872)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 8654
No 152
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.48 E-value=8.2e-14 Score=124.61 Aligned_cols=80 Identities=24% Similarity=0.336 Sum_probs=72.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 188 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
+..+.+.++|||+|||+++++++|+++|++||+|..|++ .++++|||||+|.+.++|++|++.|++..+.|++|.|
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 345567899999999999999999999999999999874 2457899999999999999999999999999999999
Q ss_pred eecC
Q 002871 264 HFSI 267 (872)
Q Consensus 264 ~~a~ 267 (872)
+|+.
T Consensus 90 ~~a~ 93 (95)
T 2ywk_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 9985
No 153
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.47 E-value=8.6e-14 Score=133.48 Aligned_cols=83 Identities=27% Similarity=0.402 Sum_probs=75.1
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
....++|||+||+.++++++|+++|++||.|++|++. ++++|||||+|.+.++|.+|++.|||..|.|++|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999763 45689999999999999999999999999999999999
Q ss_pred cCCCcccc
Q 002871 351 SRPGGARR 358 (872)
Q Consensus 351 s~p~~~r~ 358 (872)
++++..+.
T Consensus 119 a~~~~~~~ 126 (139)
T 1u6f_A 119 AASGHQRP 126 (139)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99876543
No 154
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.9e-14 Score=127.11 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=71.5
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
...++|||+|||..+++++|+++|++||.|....+.+.++|||||+|.+.++|++|++.|||..|.|++|+|++++++..
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQRD 96 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 34679999999999999999999999999863233457799999999999999999999999999999999999988653
No 155
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.3e-14 Score=126.69 Aligned_cols=81 Identities=20% Similarity=0.325 Sum_probs=73.3
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEE-EeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI-RET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~v-ri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
..++|||+|||.++++++|+++|++||.|..| ++. +.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46799999999999999999999999999888 763 346899999999999999999999999999999999999
Q ss_pred CCCcccc
Q 002871 352 RPGGARR 358 (872)
Q Consensus 352 ~p~~~r~ 358 (872)
+++..+.
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8876543
No 156
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=7.8e-14 Score=126.47 Aligned_cols=77 Identities=23% Similarity=0.360 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
...++|||+|||.++++++|+++|++||.|.+|++. +++|||||+|.+.++|++|+..|++..+.|++|.|.|+.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 356899999999999999999999999999999864 78999999999999999999999999999999999998753
No 157
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.9e-14 Score=133.16 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=72.9
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC--ceeCCcEEEEEecCCC
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR--SDINGKRIKLEPSRPG 354 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG--~~l~Gr~L~V~~s~p~ 354 (872)
...++|||+|||+++++++|+++|++||.|++|++.. .+|||||+|.+.++|.+|++.|++ ..|.|++|+|.+++++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 3467899999999999999999999999999998853 489999999999999999999974 6899999999999887
Q ss_pred cccc
Q 002871 355 GARR 358 (872)
Q Consensus 355 ~~r~ 358 (872)
..+.
T Consensus 108 ~~~~ 111 (119)
T 2ad9_A 108 ELKT 111 (119)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6544
No 158
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.47 E-value=2.7e-14 Score=130.00 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=72.1
Q ss_pred cccceeeeccCC------ccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCC-cE
Q 002871 278 NQGTLVVFNLDA------SVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDING-KR 345 (872)
Q Consensus 278 ~~~tLfV~NLp~------~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~G-r~ 345 (872)
..++|||+|||. ++++++|+++|++||.|.+|++. ++++|||||+|.+.++|++|++.|||..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357899999999 99999999999999999999863 6678999999999999999999999999999 99
Q ss_pred EEEEecCCCc
Q 002871 346 IKLEPSRPGG 355 (872)
Q Consensus 346 L~V~~s~p~~ 355 (872)
|+|.++.++.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999997743
No 159
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.6e-13 Score=124.96 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcc-cccceeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQ-YGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LRRRKLDIH 264 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~-fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~-l~gr~L~V~ 264 (872)
..+.++|||+|||+++++++|+++|++ ||.|..|++ +++++|||||+|.+.++|++|++.|++.. +.|++|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 456799999999999999999999999 999999885 45689999999999999999999999999 999999999
Q ss_pred ecCCCCCC
Q 002871 265 FSIPKDNP 272 (872)
Q Consensus 265 ~a~pk~~~ 272 (872)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99776543
No 160
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.47 E-value=1.2e-13 Score=127.17 Aligned_cols=82 Identities=20% Similarity=0.386 Sum_probs=74.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
....+.++|||+|||.++++++|+++|++||.|..|.+ ++.++|||||+|.+.++|++|+..|+|..+.|++|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566799999999999999999999999999999984 3567899999999999999999999999999999999
Q ss_pred eecCCCC
Q 002871 264 HFSIPKD 270 (872)
Q Consensus 264 ~~a~pk~ 270 (872)
.|+.++.
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9997654
No 161
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.47 E-value=5.5e-14 Score=127.54 Aligned_cols=77 Identities=17% Similarity=0.342 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC--eEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCc----ccccc
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGD--IRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNK----PLRRR 259 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~--I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~----~l~gr 259 (872)
+..-.||||+|||+++|+++|+++|++||. |.+|++ +++++|||||+|.+.++|++|++.|++. .+.|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 455689999999999999999999999995 456652 4778999999999999999999999997 48999
Q ss_pred eeeeeecC
Q 002871 260 KLDIHFSI 267 (872)
Q Consensus 260 ~L~V~~a~ 267 (872)
+|.|+|+.
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99999985
No 162
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.47 E-value=8.2e-14 Score=127.31 Aligned_cols=82 Identities=17% Similarity=0.340 Sum_probs=74.3
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCcee---CCcEEE
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDI---NGKRIK 347 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l---~Gr~L~ 347 (872)
....++|||+|||.++++++|+++|++||.|.+|++. ++++|||||+|.+.++|.+|++.|||..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 4457899999999999999999999999999999873 45689999999999999999999999988 899999
Q ss_pred EEecCCCccc
Q 002871 348 LEPSRPGGAR 357 (872)
Q Consensus 348 V~~s~p~~~r 357 (872)
|++++++..+
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999887654
No 163
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=4.3e-14 Score=128.16 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=71.7
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
..++|||+||+.++++++|+++|++||.|.+|++. +++|||||+|.+.++|.+|++.|||..|+|++|+|++++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45799999999999999999999999999999886 67899999999999999999999999999999999999874
No 164
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=127.16 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=72.2
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCC-----cEEEEEecC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDING-----KRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~G-----r~L~V~~s~ 352 (872)
...+|||+|||+++++++|+++|++||.|..|++... |||||+|.+.++|++||+.|||..|.| ++|+|++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 4679999999999999999999999999999998644 999999999999999999999999999 999999999
Q ss_pred CCccc
Q 002871 353 PGGAR 357 (872)
Q Consensus 353 p~~~r 357 (872)
++...
T Consensus 92 ~~~~~ 96 (108)
T 1x4c_A 92 PRSPS 96 (108)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 86543
No 165
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.47 E-value=1.1e-13 Score=126.20 Aligned_cols=78 Identities=24% Similarity=0.490 Sum_probs=72.9
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCccc
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 357 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r 357 (872)
..++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..|.|++|+|++++++..+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 46799999999999999999999999999999985 679999999999999999999999999999999999987654
Q ss_pred c
Q 002871 358 R 358 (872)
Q Consensus 358 ~ 358 (872)
+
T Consensus 87 ~ 87 (103)
T 2dgu_A 87 R 87 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 166
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.3e-14 Score=131.90 Aligned_cols=80 Identities=23% Similarity=0.429 Sum_probs=73.0
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+||+..+++++|+++|++||.|..|++. +.++|||||+|.+.++|++|+ .|||..|.|+.|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 346799999999999999999999999999999874 567899999999999999999 99999999999999999
Q ss_pred CCCccc
Q 002871 352 RPGGAR 357 (872)
Q Consensus 352 ~p~~~r 357 (872)
+++..+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 876543
No 167
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6.8e-14 Score=129.34 Aligned_cols=82 Identities=22% Similarity=0.404 Sum_probs=74.0
Q ss_pred CccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC---CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 274 EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 274 ~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~---~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
......++|||+||+.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..|+|++|+|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 334467899999999999999999999999999999874 34589999999999999999999999999999999999
Q ss_pred cCCCc
Q 002871 351 SRPGG 355 (872)
Q Consensus 351 s~p~~ 355 (872)
++++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98763
No 168
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.47 E-value=2.2e-13 Score=124.21 Aligned_cols=79 Identities=25% Similarity=0.476 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCC
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 270 (872)
..+.++|||+|||+++++++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|++..|.|++|.|+|+.++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 3567999999999999999999999999999999864 6799999999999999999999999999999999998765
Q ss_pred CC
Q 002871 271 NP 272 (872)
Q Consensus 271 ~~ 272 (872)
..
T Consensus 85 ~~ 86 (103)
T 2dgu_A 85 QK 86 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 169
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=120.82 Aligned_cols=78 Identities=12% Similarity=0.306 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC------CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~------~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
..++|||+|||.++++++|+++|++||.|..|.+. ++++|||||+|.+.++|++|++.|+|..+.|++|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 36899999999999999999999999999999842 227899999999999999999999999999999999999
Q ss_pred CCCC
Q 002871 267 IPKD 270 (872)
Q Consensus 267 ~pk~ 270 (872)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 170
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=2.8e-13 Score=124.81 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCccccc-----ceeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-----RKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~g-----r~L~V~ 264 (872)
.....++|||+|||+++++++|+++|++||+|..|.+... |||||+|.+.++|++|++.|++..|.| ++|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 3466899999999999999999999999999999986433 999999999999999999999999999 999999
Q ss_pred ecCCCCC
Q 002871 265 FSIPKDN 271 (872)
Q Consensus 265 ~a~pk~~ 271 (872)
++.++..
T Consensus 89 ~a~~~~~ 95 (108)
T 1x4c_A 89 VDGPRSP 95 (108)
T ss_dssp ESSCCSC
T ss_pred eCCCCCC
Confidence 9987654
No 171
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=8.4e-14 Score=126.24 Aligned_cols=82 Identities=29% Similarity=0.441 Sum_probs=72.8
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEe-CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
....++|||+|||.++++++|+++|++||.|.-++. +++.+|||||+|.+.++|++|++.|||..|.|++|+|++++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 345789999999999999999999999999854433 4567899999999999999999999999999999999999887
Q ss_pred ccc
Q 002871 355 GAR 357 (872)
Q Consensus 355 ~~r 357 (872)
..+
T Consensus 92 ~~~ 94 (101)
T 2fc9_A 92 GSP 94 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 172
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=9.1e-14 Score=125.71 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=73.2
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
...++|||+|||..+++++|+++|++||.|..|++. +.+|||||+|.+.++|++|++.|||..|.|++|+|++++++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 356799999999999999999999999999999886 4589999999999999999999999999999999999988653
No 173
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=121.42 Aligned_cols=76 Identities=32% Similarity=0.486 Sum_probs=70.5
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHh-CCceeCCcEEEEEecC
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL-NRSDINGKRIKLEPSR 352 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~L-nG~~l~Gr~L~V~~s~ 352 (872)
+...++|||+|||..+++++|+++|++||.|..|++. .++|||||+|.+.++|.+|++.| +|..++|++|+|+|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3456899999999999999999999999999999886 35899999999999999999999 9999999999999985
No 174
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=124.77 Aligned_cols=83 Identities=19% Similarity=0.388 Sum_probs=73.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
...+.++|||+|||+++++++|+++|++||.|..+. ..++++|||||+|.+.++|++|++.|++..|.|++|.|+|+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 456789999999999999999999999999995443 2567899999999999999999999999999999999999987
Q ss_pred CCCC
Q 002871 269 KDNP 272 (872)
Q Consensus 269 k~~~ 272 (872)
+...
T Consensus 91 ~~~~ 94 (101)
T 2fc9_A 91 RGSP 94 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 175
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=124.59 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCC
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 270 (872)
....++|||+|||+++++++|+++|++||.|....+..+++|||||+|.+.++|++|++.|++..+.|++|.|+++.++.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 44578999999999999999999999999985222456889999999999999999999999999999999999997654
No 176
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.46 E-value=1.3e-13 Score=131.80 Aligned_cols=79 Identities=27% Similarity=0.441 Sum_probs=73.2
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||.++++++|+++|++||.|..|++. ++.+|||||+|.+.++|++|++.|||..|+|++|+|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356799999999999999999999999999999873 467899999999999999999999999999999999999
Q ss_pred CCCc
Q 002871 352 RPGG 355 (872)
Q Consensus 352 ~p~~ 355 (872)
+++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8865
No 177
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=2.2e-13 Score=121.06 Aligned_cols=78 Identities=21% Similarity=0.403 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCC
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 270 (872)
..+.++|||+|||+++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|++..+.|++|.|+++.++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 4567999999999999999999999999999999865 5699999999999999999999999999999999998764
Q ss_pred C
Q 002871 271 N 271 (872)
Q Consensus 271 ~ 271 (872)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 178
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.8e-13 Score=123.37 Aligned_cols=81 Identities=15% Similarity=0.252 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeC--CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 192 HPSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr----~lFs~fG~I~~v~~~--~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
.+.++|||+|||+++++++|+ ++|++||+|.+|++. ...+|||||+|.+.++|++|++.|+|..+.|++|.|++
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346899999999999999999 999999999999853 22389999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002871 266 SIPKDNP 272 (872)
Q Consensus 266 a~pk~~~ 272 (872)
+.+...+
T Consensus 87 a~~~~~~ 93 (96)
T 2dgx_A 87 ATGASGP 93 (96)
T ss_dssp CCCSSCC
T ss_pred cCCCCCC
Confidence 9876543
No 179
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=130.90 Aligned_cols=80 Identities=26% Similarity=0.393 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr----~lFs~fG~I~~v~~--~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
..+.++|||+|||+.+++++|+ ++|++||+|.+|.+ +++++|||||+|.+.++|.+|++.|+|..|.|++|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4568999999999999999876 69999999999885 45789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002871 265 FSIPKD 270 (872)
Q Consensus 265 ~a~pk~ 270 (872)
|+.++.
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997653
No 180
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.46 E-value=2e-13 Score=127.86 Aligned_cols=81 Identities=20% Similarity=0.401 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
..+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|+|..+.|++|.|+++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345799999999999999999999999999999874 4567899999999999999999999999999999999999
Q ss_pred CCCCC
Q 002871 267 IPKDN 271 (872)
Q Consensus 267 ~pk~~ 271 (872)
.++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76653
No 181
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.46 E-value=1.1e-13 Score=128.94 Aligned_cols=77 Identities=21% Similarity=0.403 Sum_probs=70.3
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
....++|||+|||.++++++|+++|++||.|.+|++. ++++|||||+|.+.++|++|++.|||..|+|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999873 45689999999999999999999999999999999999
Q ss_pred cC
Q 002871 351 SR 352 (872)
Q Consensus 351 s~ 352 (872)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 182
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=124.52 Aligned_cols=81 Identities=11% Similarity=0.329 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE-EEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccce----
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIR-TLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK---- 260 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~-~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~---- 260 (872)
..+.++|||+|||+++++++|+++|++||+|. .|++ +++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45689999999999999999999999999998 8873 4568899999999999999999999999999999
Q ss_pred eeeeecCCCCC
Q 002871 261 LDIHFSIPKDN 271 (872)
Q Consensus 261 L~V~~a~pk~~ 271 (872)
|+|.|+.+...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999976543
No 183
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.4e-13 Score=125.21 Aligned_cols=81 Identities=14% Similarity=0.282 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCC
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 270 (872)
....++|||+|||.++++++|+++|++||.|..|++.. .+|||||+|.+.++|++|++.|++..+.|++|.|.|+.++.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 34679999999999999999999999999999998653 49999999999999999999999999999999999998765
Q ss_pred CC
Q 002871 271 NP 272 (872)
Q Consensus 271 ~~ 272 (872)
..
T Consensus 101 ~~ 102 (109)
T 1x4g_A 101 DM 102 (109)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 184
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.46 E-value=1.7e-13 Score=129.14 Aligned_cols=83 Identities=17% Similarity=0.418 Sum_probs=75.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
....+.++|||+|||+++++++|+++|++||.|..|.+ ++.++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34556899999999999999999999999999999984 5567999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 002871 264 HFSIPKDN 271 (872)
Q Consensus 264 ~~a~pk~~ 271 (872)
+|+.++..
T Consensus 97 ~~a~~~~~ 104 (126)
T 3ex7_B 97 DWCFVRGP 104 (126)
T ss_dssp EESEESSS
T ss_pred EEecCCCC
Confidence 99976544
No 185
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.46 E-value=1.5e-13 Score=131.27 Aligned_cols=82 Identities=24% Similarity=0.441 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
....+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999984 3578999999999999999999999999999999999
Q ss_pred eecCCCC
Q 002871 264 HFSIPKD 270 (872)
Q Consensus 264 ~~a~pk~ 270 (872)
+|+.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997654
No 186
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.4e-13 Score=126.42 Aligned_cols=84 Identities=24% Similarity=0.387 Sum_probs=75.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002871 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 188 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
+..+.+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+++ .|.|++|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 345667899999999999999999999999999999984 356789999999999999999999998 89999999
Q ss_pred eeecCCCCCC
Q 002871 263 IHFSIPKDNP 272 (872)
Q Consensus 263 V~~a~pk~~~ 272 (872)
|+++.++..+
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999765444
No 187
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=124.14 Aligned_cols=84 Identities=21% Similarity=0.410 Sum_probs=74.2
Q ss_pred CccccccceeeeccCCccchhhHhhhhcccCCeEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 274 EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 274 ~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri--~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
......++|||+|||.++++++|+++|+.|+.|..++. +++++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 34456789999999999999999999999987776653 4567899999999999999999999999999999999999
Q ss_pred CCCccc
Q 002871 352 RPGGAR 357 (872)
Q Consensus 352 ~p~~~r 357 (872)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 987654
No 188
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=124.77 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=70.1
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEE--------EEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~--------vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~ 342 (872)
.....+|||+||+.++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345689999999999999999999999999998 765 3456899999999999999999999999999
Q ss_pred CcEEEEEecC
Q 002871 343 GKRIKLEPSR 352 (872)
Q Consensus 343 Gr~L~V~~s~ 352 (872)
|++|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 189
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.46 E-value=2.6e-13 Score=122.92 Aligned_cols=77 Identities=25% Similarity=0.384 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002871 190 GEHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 190 ~e~~srtLfV~NLP~-~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
...+.++|||+|||. ++++++|+++|++||.|..|++ .+|||||+|.+.++|++|++.|+|..+.|++|.|+++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 356789999999998 9999999999999999999987 489999999999999999999999999999999999875
Q ss_pred C
Q 002871 269 K 269 (872)
Q Consensus 269 k 269 (872)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 190
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.9e-13 Score=120.88 Aligned_cols=79 Identities=20% Similarity=0.386 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQY--GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~f--G~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
...+.++|||+|||+++++++|+++|++| |.|..|++ .+|||||+|.+.++|++|++.|++..|.|++|.|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 34568999999999999999999999999 99999975 47899999999999999999999999999999999998
Q ss_pred CCCC
Q 002871 268 PKDN 271 (872)
Q Consensus 268 pk~~ 271 (872)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 191
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.3e-13 Score=124.17 Aligned_cols=79 Identities=24% Similarity=0.383 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002871 191 EHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 191 e~~srtLfV~NLP~-~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
..+.++|||+|||+ ++++++|+++|++||.|..|.+ .+|||||+|.+.++|++|++.|++..+.|++|.|+++.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 45689999999998 9999999999999999999986 4899999999999999999999999999999999999776
Q ss_pred CCC
Q 002871 270 DNP 272 (872)
Q Consensus 270 ~~~ 272 (872)
..+
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 192
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=127.89 Aligned_cols=82 Identities=27% Similarity=0.379 Sum_probs=73.7
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeE--------EEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVK--------EIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~--------~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~ 342 (872)
....++|||+|||.++++++|+++|++||.|. .|++ +++++|||||+|.+.++|++|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34578999999999999999999999999998 5765 3456899999999999999999999999999
Q ss_pred CcEEEEEecCCCccc
Q 002871 343 GKRIKLEPSRPGGAR 357 (872)
Q Consensus 343 Gr~L~V~~s~p~~~r 357 (872)
|++|+|++++++..+
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999987654
No 193
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.46 E-value=4.5e-14 Score=125.73 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=65.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002871 195 RTLFVRNINSNVEDLELRSLFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG--~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
.+|||+|||+++++++|+++|++|| .|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 8888873 56789999999999999999999999999999999999997
Q ss_pred CCCC
Q 002871 268 PKDN 271 (872)
Q Consensus 268 pk~~ 271 (872)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7543
No 194
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-13 Score=127.55 Aligned_cols=82 Identities=22% Similarity=0.385 Sum_probs=74.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC---CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 188 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~---~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
.....+.++|||+|||.++++++|+++|++||+|..|++. ..++|||||+|.+.++|++|++.|+|..+.|++|.|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445678999999999999999999999999999998852 3468999999999999999999999999999999999
Q ss_pred ecCCC
Q 002871 265 FSIPK 269 (872)
Q Consensus 265 ~a~pk 269 (872)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99764
No 195
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=132.17 Aligned_cols=81 Identities=15% Similarity=0.275 Sum_probs=73.3
Q ss_pred cccceeeeccCCccchhhHh----hhhcccCCeEEEEeC--CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 278 NQGTLVVFNLDASVSNDDLR----QIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~----e~Fs~fG~V~~vri~--~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...+|||+||++.+++++|+ ++|++||.|.+|.+. ++++|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 46789999999999999876 699999999999873 578999999999999999999999999999999999999
Q ss_pred CCCcccc
Q 002871 352 RPGGARR 358 (872)
Q Consensus 352 ~p~~~r~ 358 (872)
+++....
T Consensus 108 ~~~~~~~ 114 (127)
T 2a3j_A 108 ETPQSQV 114 (127)
T ss_dssp CCCCHHH
T ss_pred cCcchhc
Confidence 9876543
No 196
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.45 E-value=9.2e-14 Score=122.65 Aligned_cols=76 Identities=28% Similarity=0.483 Sum_probs=70.4
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
..++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|+ .|||..|.|++|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4679999999999999999999999999999976 3456899999999999999999 899999999999999998
Q ss_pred CC
Q 002871 353 PG 354 (872)
Q Consensus 353 p~ 354 (872)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 197
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=8.7e-14 Score=126.69 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=74.4
Q ss_pred cccceeeeccCCccchhhHhhhhcc-cCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCce-eCCcEEEEEec
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGA-YGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSD-INGKRIKLEPS 351 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~-fG~V~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~-l~Gr~L~V~~s 351 (872)
...+|||+|||.++++++|+++|++ ||.|..|++ ++.++|||||+|.+.++|.+|++.|+|.. |.|++|+|+++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 4679999999999999999999999 999999977 45578999999999999999999999999 99999999999
Q ss_pred CCCcccc
Q 002871 352 RPGGARR 358 (872)
Q Consensus 352 ~p~~~r~ 358 (872)
.++..++
T Consensus 88 ~~~~~~~ 94 (104)
T 2dhg_A 88 IPKASRV 94 (104)
T ss_dssp CCCCSCC
T ss_pred cCCCcCC
Confidence 8876544
No 198
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=124.67 Aligned_cols=84 Identities=24% Similarity=0.400 Sum_probs=75.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002871 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 188 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
.....+.++|||+|||+++++++|+++|++||+|..|++ ++.++|||||+|.+.++|++|++. ++..|.|++|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 344567899999999999999999999999999999874 356789999999999999999998 99999999999
Q ss_pred eeecCCCCCC
Q 002871 263 IHFSIPKDNP 272 (872)
Q Consensus 263 V~~a~pk~~~ 272 (872)
|+++.++...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999877644
No 199
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.1e-14 Score=128.08 Aligned_cols=81 Identities=23% Similarity=0.423 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
.+.+.++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|+|..+.|++|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3456799999999999999999999999999988874 45679999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002871 265 FSIPKD 270 (872)
Q Consensus 265 ~a~pk~ 270 (872)
|+.++.
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 997654
No 200
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.45 E-value=1.9e-13 Score=145.62 Aligned_cols=79 Identities=23% Similarity=0.443 Sum_probs=72.2
Q ss_pred ccccceeeeccCCccchhhHh----hhhcccCCeEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 277 VNQGTLVVFNLDASVSNDDLR----QIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~----e~Fs~fG~V~~vri--~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
...++|||+||+.++++++|+ ++|++||.|.+|++ +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 357899999999999999977 89999999999987 456789999999999999999999999999999999999
Q ss_pred cCCCc
Q 002871 351 SRPGG 355 (872)
Q Consensus 351 s~p~~ 355 (872)
++...
T Consensus 87 a~~~~ 91 (282)
T 3pgw_A 87 AKTDS 91 (282)
T ss_pred eccCc
Confidence 87644
No 201
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.45 E-value=5.8e-14 Score=127.80 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCC------CCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCccccc-c
Q 002871 192 HPSRTLFVRNINS------NVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR-R 259 (872)
Q Consensus 192 ~~srtLfV~NLP~------~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~g-r 259 (872)
..+++|||+|||+ ++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|+|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 9999999999999999999984 37789999999999999999999999999999 9
Q ss_pred eeeeeecCCC
Q 002871 260 KLDIHFSIPK 269 (872)
Q Consensus 260 ~L~V~~a~pk 269 (872)
+|.|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998653
No 202
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.45 E-value=1.5e-13 Score=127.02 Aligned_cols=79 Identities=23% Similarity=0.477 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
..+.+.++|||+|||.++++++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|+|..+.|++|.|+|+.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 446678999999999999999999999999999999865 89999999999999999999999999999999999976
Q ss_pred CC
Q 002871 269 KD 270 (872)
Q Consensus 269 k~ 270 (872)
+.
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 203
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.1e-13 Score=126.20 Aligned_cols=84 Identities=21% Similarity=0.341 Sum_probs=74.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcc
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIR--------TLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKP 255 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~--------~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~ 255 (872)
..+.+.++|||+|||+++++++|+++|++||.|. .|++ +++++|||||+|.+.++|++|++.|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456789999999999999999999999999998 4663 35678999999999999999999999999
Q ss_pred cccceeeeeecCCCCCC
Q 002871 256 LRRRKLDIHFSIPKDNP 272 (872)
Q Consensus 256 l~gr~L~V~~a~pk~~~ 272 (872)
|.|++|.|+++.++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999876543
No 204
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.45 E-value=1.7e-13 Score=127.77 Aligned_cols=78 Identities=17% Similarity=0.352 Sum_probs=72.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
....+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44567899999999999999999999999999999985 3567999999999999999999999999999999999
Q ss_pred eec
Q 002871 264 HFS 266 (872)
Q Consensus 264 ~~a 266 (872)
+|+
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 205
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.45 E-value=1.7e-13 Score=123.07 Aligned_cols=80 Identities=23% Similarity=0.573 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeC--CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr----~lFs~fG~I~~v~~~--~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
..++++|||+|||.++++++|+ ++|++||.|..|.+. ++++|||||+|.+.++|++|++.|+|..+.|++|.|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4578999999999999999999 999999999999753 3678999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002871 265 FSIPKD 270 (872)
Q Consensus 265 ~a~pk~ 270 (872)
|+.++.
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 997654
No 206
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.5e-13 Score=125.66 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=72.8
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
...++|||+||+..+++++|+++|++||.|..|++. ++++|||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 346799999999999999999999999999998763 3457999999999999999999999999999999999998
Q ss_pred CCccc
Q 002871 353 PGGAR 357 (872)
Q Consensus 353 p~~~r 357 (872)
+...+
T Consensus 93 ~~~~~ 97 (114)
T 2do0_A 93 RALPK 97 (114)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 65443
No 207
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.2e-13 Score=129.16 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC--cccccceeeeeecC
Q 002871 191 EHPSRTLFVRNINSN-VEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSI 267 (872)
Q Consensus 191 e~~srtLfV~NLP~~-vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng--~~l~gr~L~V~~a~ 267 (872)
..++++|||+|||++ +++++|+++|++||+|.+|++. +++|||||+|.+.++|++|++.|++ ..|.|++|+|.|+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 567899999999998 9999999999999999999864 6799999999999999999998865 55999999999997
Q ss_pred CCCC
Q 002871 268 PKDN 271 (872)
Q Consensus 268 pk~~ 271 (872)
.+..
T Consensus 101 ~~~~ 104 (112)
T 1x4f_A 101 KYKK 104 (112)
T ss_dssp SCSS
T ss_pred cccc
Confidence 6543
No 208
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=129.63 Aligned_cols=79 Identities=27% Similarity=0.450 Sum_probs=72.7
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
..++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|+|++|+|+++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4579999999999999999999999999999977 345689999999999999999999999999999999999987
Q ss_pred Ccc
Q 002871 354 GGA 356 (872)
Q Consensus 354 ~~~ 356 (872)
...
T Consensus 86 ~~~ 88 (116)
T 2fy1_A 86 PSF 88 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 209
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.7e-13 Score=127.49 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=74.0
Q ss_pred ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002871 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
.+...++|||+|||..+++++|+++|++||.|..|++. ++++|||||+|.+.++|++|++.|++ .|.|++|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 34467899999999999999999999999999999874 45689999999999999999999998 8999999999
Q ss_pred ecCCCcccc
Q 002871 350 PSRPGGARR 358 (872)
Q Consensus 350 ~s~p~~~r~ 358 (872)
++.++...+
T Consensus 92 ~a~~~~~~~ 100 (116)
T 2cqd_A 92 LAYLGAKPR 100 (116)
T ss_dssp ESTTTCCCC
T ss_pred EcccCCCcc
Confidence 998765433
No 210
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=2.3e-13 Score=123.99 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=72.0
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||.++++++|+++|++|| |..|++. ++++|||||+|.+.++|++|+ .|||..|.|++|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3568999999999999999999999997 9999763 456899999999999999999 89999999999999999
Q ss_pred CCCcccc
Q 002871 352 RPGGARR 358 (872)
Q Consensus 352 ~p~~~r~ 358 (872)
+++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2dng_A 91 EGRKQDK 97 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9876543
No 211
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=3.5e-13 Score=122.75 Aligned_cols=82 Identities=18% Similarity=0.378 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
....+.++|||+|||+++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3456689999999999999999999999997 998874 3667999999999999999999 79999999999999
Q ss_pred eecCCCCCC
Q 002871 264 HFSIPKDNP 272 (872)
Q Consensus 264 ~~a~pk~~~ 272 (872)
+++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999876543
No 212
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.45 E-value=8.4e-14 Score=126.53 Aligned_cols=77 Identities=19% Similarity=0.353 Sum_probs=69.2
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC------CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~------~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
...++|||+||+.++++++|+++|++|| |.+|++. ++++|||||+|.+.++|.+|+ .|+|..|+|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4568999999999999999999999999 9999873 446899999999999999999 8999999999999999
Q ss_pred cCCCc
Q 002871 351 SRPGG 355 (872)
Q Consensus 351 s~p~~ 355 (872)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98864
No 213
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.2e-13 Score=124.19 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
...+.++|||+|||+++++++|+++|++||.|..|++ .++++|||||+|.+.++|++|++.|++..|.|++|.|++
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3466899999999999999999999999999998874 345789999999999999999999999999999999999
Q ss_pred cCCC
Q 002871 266 SIPK 269 (872)
Q Consensus 266 a~pk 269 (872)
+.+.
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8654
No 214
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1e-13 Score=128.73 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=71.4
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
..++|||+|||.++++++|+++|++||.|..|++. ..++||||+|.+.++|++|++.|||..|.|++|+|+|++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 46799999999999999999999999999999986 57899999999999999999999999999999999999764
No 215
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=125.85 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=71.3
Q ss_pred ccccceeeeccCCcc------chhhHhhhhcccCCeEEEEeC---CCCccEEEEEECCHHHHHHHHHHhCCceeCCc-EE
Q 002871 277 VNQGTLVVFNLDASV------SNDDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALRALNRSDINGK-RI 346 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~------TeedL~e~Fs~fG~V~~vri~---~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr-~L 346 (872)
...++|||+|||..+ ++++|+++|++||.|..|++. ++++|||||+|.+.++|.+|++.|||..|.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346799999999999 789999999999999999874 45689999999999999999999999999998 99
Q ss_pred EEEecCCC
Q 002871 347 KLEPSRPG 354 (872)
Q Consensus 347 ~V~~s~p~ 354 (872)
+|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99999754
No 216
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.45 E-value=1.2e-13 Score=130.20 Aligned_cols=81 Identities=26% Similarity=0.403 Sum_probs=73.9
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
....+|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34679999999999999999999999999999987 3456899999999999999999999999999999999999
Q ss_pred CCCccc
Q 002871 352 RPGGAR 357 (872)
Q Consensus 352 ~p~~~r 357 (872)
.++..+
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876544
No 217
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=4.8e-14 Score=127.86 Aligned_cols=77 Identities=29% Similarity=0.406 Sum_probs=72.2
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002871 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
++|||+|||.++++++|+++|++||.|..|++...++|||||+|.+.++|++|++.|+|..+.|++|+|++++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999988655789999999999999999999999999999999999988764
No 218
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.45 E-value=2.3e-13 Score=123.04 Aligned_cols=77 Identities=23% Similarity=0.387 Sum_probs=70.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCccc
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--------LYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL 256 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~--------v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l 256 (872)
...+.++|||+|||.++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4567899999999999999999999999999988 663 356799999999999999999999999999
Q ss_pred ccceeeeeec
Q 002871 257 RRRKLDIHFS 266 (872)
Q Consensus 257 ~gr~L~V~~a 266 (872)
.|++|.|+++
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999999987
No 219
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.45 E-value=2.9e-13 Score=129.82 Aligned_cols=83 Identities=23% Similarity=0.450 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...+.++|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567899999999999999999999999999999974 35679999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002871 265 FSIPKDNP 272 (872)
Q Consensus 265 ~a~pk~~~ 272 (872)
++.++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 220
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.9e-13 Score=124.24 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEeC------CCcccEEEEEeCCHHHHHHHHHHhc--Ccccccceee
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLYTA------CKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLD 262 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~-I~~v~~~------~ksrG~AFVeF~d~e~A~~Ai~~Ln--g~~l~gr~L~ 262 (872)
.+.++|||+|||+++++++|+++|++||. |..|.+. ++++|||||+|.+.++|++|++.|+ +..+.|++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45799999999999999999999999998 9999853 3689999999999999999999996 5899999999
Q ss_pred eeecCCCCCCC
Q 002871 263 IHFSIPKDNPS 273 (872)
Q Consensus 263 V~~a~pk~~~~ 273 (872)
|.|+.++..+.
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99998776543
No 221
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.45 E-value=2e-13 Score=133.71 Aligned_cols=82 Identities=23% Similarity=0.322 Sum_probs=74.8
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||..+++++|+++|++||.|+.|++ ++.+++||||+|.+.++|++|++.|||..|+|++|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35679999999999999999999999999999987 3557899999999999999999999999999999999999
Q ss_pred CCCcccc
Q 002871 352 RPGGARR 358 (872)
Q Consensus 352 ~p~~~r~ 358 (872)
++...++
T Consensus 117 ~~~~~~~ 123 (156)
T 1h2v_Z 117 AGFKEGR 123 (156)
T ss_dssp SCCCTTC
T ss_pred CCCCCcC
Confidence 9865543
No 222
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.9e-14 Score=127.69 Aligned_cols=82 Identities=22% Similarity=0.383 Sum_probs=74.4
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34679999999999999999999999999999876 3456899999999999999999999999999999999999
Q ss_pred CCCcccc
Q 002871 352 RPGGARR 358 (872)
Q Consensus 352 ~p~~~r~ 358 (872)
.++..+.
T Consensus 86 ~~~~~~~ 92 (104)
T 1p1t_A 86 ASEKNKE 92 (104)
T ss_dssp TCTTHHH
T ss_pred CCccchh
Confidence 9876554
No 223
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.6e-14 Score=125.03 Aligned_cols=78 Identities=27% Similarity=0.348 Sum_probs=70.9
Q ss_pred cccceeeeccCCccchhhHhhhhcccCC-eEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC-ceeCCcEEEEEecCCCc
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGE-VKEIRETPHKRHHKFIEFYDVRAAEAALRALNR-SDINGKRIKLEPSRPGG 355 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~-V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG-~~l~Gr~L~V~~s~p~~ 355 (872)
..++|||+|||.++++++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.||| ..|+|++|+|++++++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 4679999999999999999999999999 666665 3689999999999999999999999 99999999999999876
Q ss_pred cc
Q 002871 356 AR 357 (872)
Q Consensus 356 ~r 357 (872)
.+
T Consensus 85 ~~ 86 (93)
T 2cqh_A 85 LR 86 (93)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 224
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.3e-13 Score=121.65 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=71.6
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
...++|||+|| ++++++|+++|++||.|..|++ ..++|||||+|.+.++|.+|++.|||..|.|++|+|.+++++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 35679999996 8999999999999999999998 46789999999999999999999999999999999999988754
Q ss_pred c
Q 002871 357 R 357 (872)
Q Consensus 357 r 357 (872)
+
T Consensus 90 ~ 90 (97)
T 1x5p_A 90 L 90 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 225
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.3e-13 Score=126.08 Aligned_cols=83 Identities=22% Similarity=0.381 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCe----EEEE-eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDI----RTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I----~~v~-~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...+.++|||+|||.++++++|+++|++||.| ..++ .+++++|||||+|.+.++|++|++.|++..+.|++|.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34568999999999999999999999999998 4444 467889999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002871 265 FSIPKDNP 272 (872)
Q Consensus 265 ~a~pk~~~ 272 (872)
|+.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99876543
No 226
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.4e-13 Score=122.98 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC-cccccceeeeeecCC
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLYTACKHRGFVMISYYDIRAARTAMRALQN-KPLRRRKLDIHFSIP 268 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~-I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng-~~l~gr~L~V~~a~p 268 (872)
..+.++|||+|||+++++++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.|++ ..+.|++|.|+|+.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 346799999999999999999999999999 665554 4789999999999999999999999 999999999999987
Q ss_pred CCCC
Q 002871 269 KDNP 272 (872)
Q Consensus 269 k~~~ 272 (872)
+...
T Consensus 83 ~~~~ 86 (93)
T 2cqh_A 83 KKLR 86 (93)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6543
No 227
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.44 E-value=1.5e-13 Score=128.20 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEe-CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYG-DIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG-~I~~v~~-~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
....++|||+|||+++++++|+++|++|| +|..+.+ ..+++|||||+|.+.++|++|++.|+|..|.|++|.|+++..
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34568999999999999999999999999 8999986 357899999999999999999999999999999999999864
No 228
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=9.1e-14 Score=129.98 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=71.2
Q ss_pred ccccceeeeccCCc-cchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC--ceeCCcEEEEEecCC
Q 002871 277 VNQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR--SDINGKRIKLEPSRP 353 (872)
Q Consensus 277 ~~~~tLfV~NLp~~-~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG--~~l~Gr~L~V~~s~p 353 (872)
...++|||+|||++ +++++|+++|++||.|.+|++. +.+|||||+|.+.++|.+|++.|++ ..|.|++|+|.++++
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 34679999999998 9999999999999999999985 5689999999999999999999864 569999999999987
Q ss_pred Ccc
Q 002871 354 GGA 356 (872)
Q Consensus 354 ~~~ 356 (872)
+..
T Consensus 102 ~~~ 104 (112)
T 1x4f_A 102 YKK 104 (112)
T ss_dssp CSS
T ss_pred ccc
Confidence 653
No 229
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=9.4e-14 Score=125.16 Aligned_cols=78 Identities=27% Similarity=0.393 Sum_probs=71.5
Q ss_pred ccccceeeeccCC-ccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002871 277 VNQGTLVVFNLDA-SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 277 ~~~~tLfV~NLp~-~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
...++|||+|||. .+++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 3567999999998 99999999999999999999983 8999999999999999999999999999999999998765
Q ss_pred cc
Q 002871 356 AR 357 (872)
Q Consensus 356 ~r 357 (872)
..
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 230
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-13 Score=130.46 Aligned_cols=84 Identities=19% Similarity=0.360 Sum_probs=74.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--EEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCc----c
Q 002871 187 HPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--LYT-----ACKHRGFVMISYYDIRAARTAMRALQNK----P 255 (872)
Q Consensus 187 ~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~--v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~----~ 255 (872)
.+....+.++|||+|||+++++++|+++|++||.|.. |++ +++++|||||+|.+. +|.+|+..|++. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3445577899999999999999999999999999965 652 577899999999999 999999999999 9
Q ss_pred cccceeeeeecCCCCC
Q 002871 256 LRRRKLDIHFSIPKDN 271 (872)
Q Consensus 256 l~gr~L~V~~a~pk~~ 271 (872)
+.|++|.|+++.++..
T Consensus 95 ~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKR 110 (131)
T ss_dssp GGGCCCCCEECCCSCC
T ss_pred CCCEEEEEEECCCCCC
Confidence 9999999999987654
No 231
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.44 E-value=3.2e-13 Score=123.59 Aligned_cols=78 Identities=22% Similarity=0.420 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
...+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|++
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4467899999999999999999999999999999874 456799999999999999999999999999999999999
Q ss_pred cC
Q 002871 266 SI 267 (872)
Q Consensus 266 a~ 267 (872)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 232
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.44 E-value=1.6e-13 Score=131.52 Aligned_cols=77 Identities=23% Similarity=0.303 Sum_probs=71.3
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccE-EEEEECCHHHHHHHHHHhCCceeCC--cEEEEEecCCCcc
Q 002871 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALRALNRSDING--KRIKLEPSRPGGA 356 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGf-aFVeF~~~e~A~kAl~~LnG~~l~G--r~L~V~~s~p~~~ 356 (872)
-.|||+||++.+|+++|+++|++||.|.+|++..+.+|| |||+|.+.++|++|++.|||..|.| ++|+|+|+++..-
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 368899999999999999999999999999886667788 9999999999999999999999988 9999999998753
No 233
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.43 E-value=3.7e-13 Score=123.46 Aligned_cols=80 Identities=14% Similarity=0.282 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCcccccc-
Q 002871 190 GEHPSRTLFVRNINSNV------EDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 259 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~v------teeeLr~lFs~fG~I~~v~~---~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr- 259 (872)
.....++|||+|||+.+ ++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+..|+|..+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34557999999999999 78999999999999999985 456789999999999999999999999999998
Q ss_pred eeeeeecCCC
Q 002871 260 KLDIHFSIPK 269 (872)
Q Consensus 260 ~L~V~~a~pk 269 (872)
+|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998643
No 234
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=8.4e-13 Score=119.00 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
...+.++|||+|| ++++++|+++|++||+|..|.+ .+++|||||+|.+.++|++|+..|++..+.|++|.|.|+.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3457899999996 9999999999999999999987 478999999999999999999999999999999999999876
Q ss_pred CC
Q 002871 270 DN 271 (872)
Q Consensus 270 ~~ 271 (872)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 235
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=124.42 Aligned_cols=80 Identities=23% Similarity=0.316 Sum_probs=72.7
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeE-EEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcE----E
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVK-EIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR----I 346 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~-~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~----L 346 (872)
...++|||+|||.++++++|+++|++||.|. .|++ ++.++|||||+|.+.++|++|++.|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3467999999999999999999999999999 8876 3456899999999999999999999999999999 9
Q ss_pred EEEecCCCcc
Q 002871 347 KLEPSRPGGA 356 (872)
Q Consensus 347 ~V~~s~p~~~ 356 (872)
+|.++++...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999987653
No 236
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=124.82 Aligned_cols=81 Identities=30% Similarity=0.484 Sum_probs=73.4
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
....++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++. ++..|+|++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 345689999999999999999999999999999976 345679999999999999999998 99999999999999
Q ss_pred cCCCccc
Q 002871 351 SRPGGAR 357 (872)
Q Consensus 351 s~p~~~r 357 (872)
++++..+
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9987654
No 237
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.43 E-value=3.9e-13 Score=123.96 Aligned_cols=77 Identities=23% Similarity=0.493 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002871 191 EHPSRTLFVRNINSN-VEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 191 e~~srtLfV~NLP~~-vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
....++|||+|||++ +++++|+++|++||+|..|.+ ++|||||+|.+.++|++|++.|++..+.|++|.|+|+.+.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 345689999999999 999999999999999999987 7899999999999999999999999999999999999754
Q ss_pred C
Q 002871 270 D 270 (872)
Q Consensus 270 ~ 270 (872)
.
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 238
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.2e-13 Score=122.45 Aligned_cols=83 Identities=20% Similarity=0.425 Sum_probs=74.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~--~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
...+.++|||+|||.++++++|+++|+.|+.|..+. .+++++|||||+|.+.++|++|++.|++..|.|++|.|+|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 346789999999999999999999999998877765 356789999999999999999999999999999999999998
Q ss_pred CCCCC
Q 002871 268 PKDNP 272 (872)
Q Consensus 268 pk~~~ 272 (872)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76543
No 239
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.43 E-value=1.7e-13 Score=123.00 Aligned_cols=80 Identities=23% Similarity=0.433 Sum_probs=73.5
Q ss_pred cccceeeeccCCccchhhHh----hhhcccCCeEEEEeC--CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 278 NQGTLVVFNLDASVSNDDLR----QIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~----e~Fs~fG~V~~vri~--~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
..++|||+|||.++++++|+ ++|++||.|..|++. +.++|||||+|.+.++|.+|++.|||..|.|++|+|+++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46799999999999999999 999999999999874 346799999999999999999999999999999999999
Q ss_pred CCCccc
Q 002871 352 RPGGAR 357 (872)
Q Consensus 352 ~p~~~r 357 (872)
+++...
T Consensus 87 ~~~~~~ 92 (97)
T 1nu4_A 87 KTDSDI 92 (97)
T ss_dssp SSCCTH
T ss_pred cCCCcc
Confidence 987643
No 240
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.43 E-value=3.2e-13 Score=118.95 Aligned_cols=76 Identities=18% Similarity=0.384 Sum_probs=69.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
.+.+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ +++..+.|++|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999984 36679999999999999999996 68889999999998
Q ss_pred ec
Q 002871 265 FS 266 (872)
Q Consensus 265 ~a 266 (872)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 241
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.7e-13 Score=127.02 Aligned_cols=82 Identities=27% Similarity=0.330 Sum_probs=73.3
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCe----EEEE-eCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEV----KEIR-ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V----~~vr-i~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||.++++++|+++|++||.| ..++ .+++++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 346799999999999999999999999998 4554 36778999999999999999999999999999999999999
Q ss_pred CCCcccc
Q 002871 352 RPGGARR 358 (872)
Q Consensus 352 ~p~~~r~ 358 (872)
+++..+.
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpx_A 103 KNKKQRS 109 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCCC
Confidence 9876543
No 242
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.6e-13 Score=123.64 Aligned_cols=78 Identities=22% Similarity=0.235 Sum_probs=69.6
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEE-----eCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vr-----i~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||..+++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++.|||..|+|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3467899999999999999999999999986542 24567899999999999999999999999999999999999
Q ss_pred CCC
Q 002871 352 RPG 354 (872)
Q Consensus 352 ~p~ 354 (872)
+..
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 764
No 243
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.43 E-value=3.1e-13 Score=123.63 Aligned_cols=76 Identities=22% Similarity=0.374 Sum_probs=70.1
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
...++|||+|||+.+++++|+++|++||.|+.|++. ++++|||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 346799999999999999999999999999999763 4568999999999999999999999999999999999985
No 244
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.43 E-value=2.9e-13 Score=119.42 Aligned_cols=76 Identities=22% Similarity=0.433 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
..++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+ .|++..+.|++|.|+++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999873 4567999999999999999999 899999999999999987
Q ss_pred CC
Q 002871 268 PK 269 (872)
Q Consensus 268 pk 269 (872)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 245
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.43 E-value=5.6e-13 Score=130.53 Aligned_cols=81 Identities=25% Similarity=0.398 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
..+.++|||+|||.++++++|+++|++||+|..|.+ ++.++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456899999999999999999999999999999985 466889999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002871 266 SIPKDN 271 (872)
Q Consensus 266 a~pk~~ 271 (872)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 976543
No 246
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=124.20 Aligned_cols=79 Identities=18% Similarity=0.376 Sum_probs=69.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe------CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~------~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
.....++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|++..+.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345679999999999999999999999999 999984 3557899999999999999999 89999999999999
Q ss_pred eecCCCC
Q 002871 264 HFSIPKD 270 (872)
Q Consensus 264 ~~a~pk~ 270 (872)
+++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997653
No 247
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.43 E-value=2.6e-13 Score=125.48 Aligned_cols=81 Identities=25% Similarity=0.402 Sum_probs=70.9
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
....++|||+||+.++++++|+++|++||.|.+|++. +.++|||||+|.+.++|.+|++.+ +..|+|+.|+|++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 3456899999999999999999999999999999873 556899999999999999999976 5999999999999
Q ss_pred cCCCccc
Q 002871 351 SRPGGAR 357 (872)
Q Consensus 351 s~p~~~r 357 (872)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987654
No 248
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.7e-13 Score=120.19 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
.+.++|||+|||+++++++|+++|++||+|..|.+ ++.++|||||+|.+.++|++|++.|+|..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46799999999999999999999999999999973 3567999999999999999999999999999999998875
Q ss_pred C
Q 002871 267 I 267 (872)
Q Consensus 267 ~ 267 (872)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 249
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.5e-13 Score=127.80 Aligned_cols=81 Identities=16% Similarity=0.305 Sum_probs=73.0
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
....++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++. ++..|+|++|+|++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 3456799999999999999999999999999999763 45689999999999999999997 99999999999999
Q ss_pred cCCCccc
Q 002871 351 SRPGGAR 357 (872)
Q Consensus 351 s~p~~~r 357 (872)
++++..+
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9987654
No 250
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=135.64 Aligned_cols=79 Identities=14% Similarity=0.221 Sum_probs=71.9
Q ss_pred cccceeeeccCCccchhhHhhhhcccC--CeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG--~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
..++|||+||++++++++|+++|++|| .|.+|++ +++++|||||+|.+.++|++||+.|||..|+|++|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 356999999999999999999999999 9999976 467799999999999999999999999999999999999
Q ss_pred cCCCcc
Q 002871 351 SRPGGA 356 (872)
Q Consensus 351 s~p~~~ 356 (872)
+.++..
T Consensus 134 a~~~~~ 139 (156)
T 3n9u_C 134 ATRQNL 139 (156)
T ss_dssp CCHHHH
T ss_pred cCCCcc
Confidence 987543
No 251
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.42 E-value=5.4e-13 Score=125.69 Aligned_cols=79 Identities=19% Similarity=0.297 Sum_probs=72.4
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
...++|||+||+..+++++|+++|++||.|+.|++. ++++|||||+|.+.++|.+|++.|||..|+|++|+|+++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 346799999999999999999999999999999763 4578999999999999999999999999999999999998
Q ss_pred CCc
Q 002871 353 PGG 355 (872)
Q Consensus 353 p~~ 355 (872)
+..
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 754
No 252
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.8e-13 Score=119.99 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=70.7
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEE-eCC-CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-ETP-HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vr-i~~-~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
..++|||+|||+.+++++|+++|++||.|..|+ +.. ...+.|||+|.+.++|++|++.|||..|+|++|+|+++.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 467899999999999999999999999999995 533 345669999999999999999999999999999999999874
No 253
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=8.9e-14 Score=121.97 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=69.4
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
..++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4578999999999999999999999999999976 34568999999999999999999999999999999988765
Q ss_pred C
Q 002871 353 P 353 (872)
Q Consensus 353 p 353 (872)
.
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 254
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.1e-13 Score=125.31 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=70.7
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
+...++|||+|||+++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|.+|+. ++|..|+|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3456899999999999999999999999999999764 4578999999999999999999 9999999999999987
Q ss_pred CC
Q 002871 352 RP 353 (872)
Q Consensus 352 ~p 353 (872)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 255
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.42 E-value=1.1e-13 Score=123.75 Aligned_cols=76 Identities=21% Similarity=0.251 Sum_probs=67.6
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
...+|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|||..|+|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3579999999999999999999999999865532 34678999999999999999999999999999999999987
Q ss_pred C
Q 002871 353 P 353 (872)
Q Consensus 353 p 353 (872)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 5
No 256
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.42 E-value=3.8e-13 Score=118.46 Aligned_cols=75 Identities=27% Similarity=0.415 Sum_probs=67.9
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
....++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ +++..|+|++|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 345689999999999999999999999999999976 35668999999999999999996 688999999999987
Q ss_pred c
Q 002871 351 S 351 (872)
Q Consensus 351 s 351 (872)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 257
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.4e-13 Score=124.78 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=72.9
Q ss_pred cccceeeeccCCccchhhHhhhhcccCC-eEEEEeC------CCCccEEEEEECCHHHHHHHHHHhC--CceeCCcEEEE
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGE-VKEIRET------PHKRHHKFIEFYDVRAAEAALRALN--RSDINGKRIKL 348 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~-V~~vri~------~~skGfaFVeF~~~e~A~kAl~~Ln--G~~l~Gr~L~V 348 (872)
..++|||+|||.++++++|+++|++||. |.+|++. +.++|||||+|.+.++|.+|++.|+ +..+.|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4679999999999999999999999998 9999875 3678999999999999999999996 58999999999
Q ss_pred EecCCCccc
Q 002871 349 EPSRPGGAR 357 (872)
Q Consensus 349 ~~s~p~~~r 357 (872)
++++++...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999987653
No 258
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.42 E-value=2.1e-13 Score=120.83 Aligned_cols=76 Identities=13% Similarity=0.305 Sum_probs=70.7
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
..++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|||..++|++|+|+++..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 45789999999999999999999999 99999885 789999999999999999999999999999999999986643
No 259
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.41 E-value=1.9e-13 Score=131.49 Aligned_cols=85 Identities=28% Similarity=0.463 Sum_probs=76.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002871 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 188 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
+....+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344567899999999999999999999999999999984 457899999999999999999999999999999999
Q ss_pred eeecCCCCCC
Q 002871 263 IHFSIPKDNP 272 (872)
Q Consensus 263 V~~a~pk~~~ 272 (872)
|+|+.++..+
T Consensus 121 V~~a~~~~~~ 130 (135)
T 2lea_A 121 VQMARYGRPP 130 (135)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876544
No 260
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.1e-13 Score=124.22 Aligned_cols=76 Identities=12% Similarity=0.302 Sum_probs=70.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
+.+.++|||+|||+++|+++|+++|++||+|.+|++ .+.++|||||+|.+.++|++|+. +++..+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 455799999999999999999999999999999984 26689999999999999999999 9999999999999986
Q ss_pred C
Q 002871 267 I 267 (872)
Q Consensus 267 ~ 267 (872)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 4
No 261
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=8.8e-13 Score=122.15 Aligned_cols=80 Identities=16% Similarity=0.311 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCccc--------c
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPL--------R 257 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l--------~ 257 (872)
.+.+.++|||+|||+++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|+|..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4456799999999999999999999999999999874 456789999999999999999999999999 5
Q ss_pred cceeeeeecCCC
Q 002871 258 RRKLDIHFSIPK 269 (872)
Q Consensus 258 gr~L~V~~a~pk 269 (872)
+++|.|.|+.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998754
No 262
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=2.4e-13 Score=122.36 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=70.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
.....++|||+|||+++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++.|++..|.|++|.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345678999999999999999999999999986432 245679999999999999999999999999999999999
Q ss_pred ecCC
Q 002871 265 FSIP 268 (872)
Q Consensus 265 ~a~p 268 (872)
++..
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9864
No 263
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=2.5e-13 Score=120.34 Aligned_cols=75 Identities=16% Similarity=0.370 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
+..++|||+|||+++++++|+++|++| +|..|++. +++|||||+|.+.++|++|++.|++..+.|++|.|+|+..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 457899999999999999999999999 99998874 8899999999999999999999999999999999999854
No 264
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.41 E-value=3e-13 Score=117.88 Aligned_cols=70 Identities=16% Similarity=0.346 Sum_probs=64.7
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCcccccc-eeee
Q 002871 194 SRTLFVRNINSNV------EDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDI 263 (872)
Q Consensus 194 srtLfV~NLP~~v------teeeLr~lFs~fG~I~~v~~---~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr-~L~V 263 (872)
+++|||+|||..+ ++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 77999999999999999984 456789999999999999999999999999999 8876
No 265
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.1e-12 Score=119.33 Aligned_cols=82 Identities=15% Similarity=0.300 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
....+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ ++..+.|++|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34567899999999999999999999999999999874 36779999999999999999998 477899999999
Q ss_pred eecCCCCCC
Q 002871 264 HFSIPKDNP 272 (872)
Q Consensus 264 ~~a~pk~~~ 272 (872)
+++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999877654
No 266
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.41 E-value=1.5e-13 Score=122.82 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=67.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
..+.++|||+|||+++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++.|++..+.|++|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 44579999999999999999999999999986543 2456889999999999999999999999999999999998
Q ss_pred cC
Q 002871 266 SI 267 (872)
Q Consensus 266 a~ 267 (872)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 267
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.41 E-value=1.2e-13 Score=131.71 Aligned_cols=80 Identities=23% Similarity=0.369 Sum_probs=72.1
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEE--EEe-----CCCCccEEEEEECCHHHHHHHHHHhCCc----eeCCc
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE--IRE-----TPHKRHHKFIEFYDVRAAEAALRALNRS----DINGK 344 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~--vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~----~l~Gr 344 (872)
....++|||+||++++|+++|+++|++||.|.. |++ +++++|||||+|.+. +|.+|++.|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999966 765 466799999999999 999999999999 99999
Q ss_pred EEEEEecCCCcc
Q 002871 345 RIKLEPSRPGGA 356 (872)
Q Consensus 345 ~L~V~~s~p~~~ 356 (872)
+|+|++++++..
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999988643
No 268
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.41 E-value=8.4e-13 Score=124.35 Aligned_cols=82 Identities=22% Similarity=0.414 Sum_probs=74.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4466799999999999999999999999999999874 355889999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002871 266 SIPKDN 271 (872)
Q Consensus 266 a~pk~~ 271 (872)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 976543
No 269
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.41 E-value=3.5e-13 Score=133.01 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG--~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...++|||+|||+++++++|+++|++|| .|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 9999874 57789999999999999999999999999999999999
Q ss_pred ecCCC
Q 002871 265 FSIPK 269 (872)
Q Consensus 265 ~a~pk 269 (872)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98653
No 270
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.40 E-value=1.5e-13 Score=117.60 Aligned_cols=70 Identities=20% Similarity=0.361 Sum_probs=65.2
Q ss_pred ceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 281 tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
+|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++ |+|..|+|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999976 35568999999999999999998 9999999999999875
No 271
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.40 E-value=9.7e-14 Score=123.05 Aligned_cols=76 Identities=20% Similarity=0.429 Sum_probs=67.2
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002871 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
++|||+|||.++++++|+++|++||.|.+|++. +.++|||||+|.+.+ |.+|++.|||..++|++|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 579999999999999999999999999999874 566899999999999 99999999999999999999999876
Q ss_pred cc
Q 002871 355 GA 356 (872)
Q Consensus 355 ~~ 356 (872)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 272
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.5e-13 Score=127.40 Aligned_cols=78 Identities=18% Similarity=0.386 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC-----CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA-----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~-----~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
+...++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|+ .|++..|.|+.|.|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 3456899999999999999999999999999999853 678999999999999999999 8999999999999999
Q ss_pred cCCC
Q 002871 266 SIPK 269 (872)
Q Consensus 266 a~pk 269 (872)
+.++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8654
No 273
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=4.1e-13 Score=124.41 Aligned_cols=80 Identities=18% Similarity=0.273 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEeC--------CCcccEEEEEeCCHHHHHHHHHHhcCcccccc
Q 002871 191 EHPSRTLFVRNINSNVEDLELR---SLFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRR 259 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr---~lFs~fG~I~~v~~~--------~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr 259 (872)
....++|||+|||+++++++|+ ++|++||+|..|++. .+++|||||+|.+.++|++|++.|++..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4567899999999999999999 999999999999842 14569999999999999999999999999999
Q ss_pred eeeeeecCCCC
Q 002871 260 KLDIHFSIPKD 270 (872)
Q Consensus 260 ~L~V~~a~pk~ 270 (872)
+|.|.|+.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998765
No 274
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.40 E-value=1e-12 Score=125.56 Aligned_cols=78 Identities=24% Similarity=0.452 Sum_probs=71.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
....+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999984 3567999999999999999999999999999999999
Q ss_pred eec
Q 002871 264 HFS 266 (872)
Q Consensus 264 ~~a 266 (872)
+||
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 985
No 275
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.4e-13 Score=118.57 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=70.4
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
....+|||+|||.++++++|+++|++| .|..|++ +++++|||||+|.+.++|++|++ |||..|+|+.|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 356799999999999999999999999 8988876 34568999999999999999999 99999999999999998
Q ss_pred CCc
Q 002871 353 PGG 355 (872)
Q Consensus 353 p~~ 355 (872)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 276
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=8.2e-13 Score=117.41 Aligned_cols=78 Identities=9% Similarity=0.207 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
....++|||+|||+++++++|+++|++| .|..|++ +++++|||||+|.+.++|++|++ |++..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4567999999999999999999999999 8888873 45679999999999999999999 9999999999999999
Q ss_pred CCCC
Q 002871 267 IPKD 270 (872)
Q Consensus 267 ~pk~ 270 (872)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7653
No 277
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1e-12 Score=119.45 Aligned_cols=79 Identities=20% Similarity=0.377 Sum_probs=71.1
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
....++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ ++..|+|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 345679999999999999999999999999999976 35568999999999999999999 57899999999999
Q ss_pred cCCCcc
Q 002871 351 SRPGGA 356 (872)
Q Consensus 351 s~p~~~ 356 (872)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 998754
No 278
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=8.5e-13 Score=122.23 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=70.8
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCcee--------CCc
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDI--------NGK 344 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l--------~Gr 344 (872)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45679999999999999999999999999999976 345689999999999999999999999999 578
Q ss_pred EEEEEecCCC
Q 002871 345 RIKLEPSRPG 354 (872)
Q Consensus 345 ~L~V~~s~p~ 354 (872)
+|+|.|+.|.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999875
No 279
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.40 E-value=1.7e-13 Score=119.45 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=63.9
Q ss_pred cceeeeccCCcc------chhhHhhhhcccCCeEEEEeC---CCCccEEEEEECCHHHHHHHHHHhCCceeCCc-EEEE
Q 002871 280 GTLVVFNLDASV------SNDDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALRALNRSDINGK-RIKL 348 (872)
Q Consensus 280 ~tLfV~NLp~~~------TeedL~e~Fs~fG~V~~vri~---~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr-~L~V 348 (872)
++|||+|||..+ ++++|+++|++||.|.+|++. ++++|||||+|.+.++|++|++.|||..|+|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 779999999999999999874 45689999999999999999999999999999 8876
No 280
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=7.9e-13 Score=123.94 Aligned_cols=77 Identities=17% Similarity=0.315 Sum_probs=70.0
Q ss_pred CCCCcEEEE--cCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCccc-----ccceeee
Q 002871 191 EHPSRTLFV--RNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL-----RRRKLDI 263 (872)
Q Consensus 191 e~~srtLfV--~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l-----~gr~L~V 263 (872)
..++++||| +||++++++++|+++|++||+|.+|.+. ..+|||||+|.+.++|++|++.|+|+.+ .+++|+|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 456899999 6699999999999999999999999754 5689999999999999999999999988 7899999
Q ss_pred eecCC
Q 002871 264 HFSIP 268 (872)
Q Consensus 264 ~~a~p 268 (872)
.|+..
T Consensus 101 ~~a~~ 105 (114)
T 2cq2_A 101 NFVEK 105 (114)
T ss_dssp EEESC
T ss_pred Eeccc
Confidence 99864
No 281
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-12 Score=117.05 Aligned_cols=79 Identities=24% Similarity=0.286 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-e-CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-T-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-~-~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
...++|||+|||+++++++|+++|++||.|..|+ + ..+..+.|||+|.+.++|++|++.|+|..+.|++|.|.++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 4578999999999999999999999999999994 3 3445566999999999999999999999999999999999876
Q ss_pred C
Q 002871 270 D 270 (872)
Q Consensus 270 ~ 270 (872)
+
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 282
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.39 E-value=1e-12 Score=125.88 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccE-EEEEeCCHHHHHHHHHHhcCccccc--ceeeeeecCCC
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPK 269 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~-AFVeF~d~e~A~~Ai~~Lng~~l~g--r~L~V~~a~pk 269 (872)
.--.|||+||++.+|+++|+++|++||+|.+|++..+.+|+ |||+|.+.++|++|++.|+|..|.+ +.|+|+|++++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 34577899999999999999999999999999866667788 9999999999999999999999988 89999999876
Q ss_pred C
Q 002871 270 D 270 (872)
Q Consensus 270 ~ 270 (872)
.
T Consensus 107 ~ 107 (130)
T 3zzy_A 107 S 107 (130)
T ss_dssp S
T ss_pred c
Confidence 4
No 283
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.2e-12 Score=119.95 Aligned_cols=80 Identities=11% Similarity=0.183 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT-LYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~-v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
.....++|||+|||+++++++|+++|++||.|.. |.+ +++++|||||+|.+.++|++|++. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3456799999999999999999999999999987 653 567899999999999999999996 9999999999999
Q ss_pred ecCCCC
Q 002871 265 FSIPKD 270 (872)
Q Consensus 265 ~a~pk~ 270 (872)
++.+++
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 986544
No 284
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.39 E-value=6.1e-13 Score=123.05 Aligned_cols=81 Identities=16% Similarity=0.389 Sum_probs=69.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...+.++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456799999999999999999999999999999984 3667999999999999999999965 599999999999
Q ss_pred ecCCCCC
Q 002871 265 FSIPKDN 271 (872)
Q Consensus 265 ~a~pk~~ 271 (872)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987654
No 285
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.39 E-value=9.1e-13 Score=125.88 Aligned_cols=75 Identities=25% Similarity=0.426 Sum_probs=69.1
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||..+++++|+++|++||.|..+++. ++++|||||+|.+.++|++|++.|||..|+|++|+|++|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 456799999999999999999999999999999873 456899999999999999999999999999999999985
No 286
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.39 E-value=3.8e-13 Score=133.61 Aligned_cols=77 Identities=23% Similarity=0.306 Sum_probs=70.4
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEeC-CCCccEEEEEECCHHHHHHHHHHhCCceeCC--cEEEEEecCCCc
Q 002871 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALRALNRSDING--KRIKLEPSRPGG 355 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-~~skGfaFVeF~~~e~A~kAl~~LnG~~l~G--r~L~V~~s~p~~ 355 (872)
-.+|||+||++.+|+++|+++|++||+|++|++. ..+++||||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 3579999999999999999999999999999874 3457899999999999999999999999965 999999999874
No 287
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.39 E-value=5.1e-13 Score=125.57 Aligned_cols=77 Identities=26% Similarity=0.456 Sum_probs=71.0
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
..++|||+||+.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|+ .|||..|+|++|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999999999976 4567899999999999999999 799999999999999998
Q ss_pred CCc
Q 002871 353 PGG 355 (872)
Q Consensus 353 p~~ 355 (872)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 288
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=6.6e-13 Score=126.32 Aligned_cols=74 Identities=28% Similarity=0.302 Sum_probs=68.0
Q ss_pred ceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccE-EEEEECCHHHHHHHHHHhCCceeCC--cEEEEEecCCCc
Q 002871 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALRALNRSDING--KRIKLEPSRPGG 355 (872)
Q Consensus 281 tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGf-aFVeF~~~e~A~kAl~~LnG~~l~G--r~L~V~~s~p~~ 355 (872)
.|||+||++.+++++|+++|++||.|++|++..+ .|| |||+|.+.++|.+|+++|||..|.| +.|+|++++++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 4689999999999999999999999999988544 586 9999999999999999999999988 699999999875
No 289
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.38 E-value=1.7e-13 Score=121.47 Aligned_cols=76 Identities=21% Similarity=0.402 Sum_probs=67.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002871 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
++|||+|||.++++++|+++|++||+|.+|.+ +++++|||||+|.+.+ |++|+..|+|..+.|++|.|+++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999884 3667999999999999 99999999999999999999999765
Q ss_pred CC
Q 002871 270 DN 271 (872)
Q Consensus 270 ~~ 271 (872)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 290
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.38 E-value=3.6e-13 Score=115.23 Aligned_cols=70 Identities=16% Similarity=0.389 Sum_probs=65.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002871 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 196 tLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
+|||+|||+++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++ +++..+.|++|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999874 46678999999999999999998 9999999999999875
No 291
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6.5e-13 Score=121.60 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=70.7
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEE-EEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE-IRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~-vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
....+|||+|||+++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++. ++..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 34679999999999999999999999999987 765 466789999999999999999997 999999999999998
Q ss_pred CCCc
Q 002871 352 RPGG 355 (872)
Q Consensus 352 ~p~~ 355 (872)
.++.
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7654
No 292
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.38 E-value=1.6e-13 Score=124.49 Aligned_cols=80 Identities=23% Similarity=0.305 Sum_probs=70.9
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEE----EeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI----RETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~v----ri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
...+|||+|||.++++++|+++|++||.|..+ +.++.++|||||+|.+.++|++|++ |||..|.|++|+|.++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 46799999999999999999999999987652 2245779999999999999999999 999999999999999998
Q ss_pred Ccccc
Q 002871 354 GGARR 358 (872)
Q Consensus 354 ~~~r~ 358 (872)
+..++
T Consensus 95 ~~~~~ 99 (101)
T 1fj7_A 95 RDGTR 99 (101)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76543
No 293
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.1e-12 Score=115.74 Aligned_cols=79 Identities=16% Similarity=0.292 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCC
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 271 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 271 (872)
...++|||+|||+++++++|+++|++||.|..|........||||+|.+.++|++|+. |++..|.|++|.|+++.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 4568999999999999999999999999999985433222299999999999999999 999999999999999876544
No 294
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.38 E-value=8.6e-13 Score=117.75 Aligned_cols=76 Identities=24% Similarity=0.397 Sum_probs=64.1
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCce--eCCcEEEEEecCCC
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSD--INGKRIKLEPSRPG 354 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~--l~Gr~L~V~~s~p~ 354 (872)
....+|||+|||+++|+++|+++|++||.|.+|++..+++|||||+|.+.++|++ |+|.. +.|++|.|.++.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 3567999999999999999999999999999999987889999999999999983 56665 56999999999987
Q ss_pred cc
Q 002871 355 GA 356 (872)
Q Consensus 355 ~~ 356 (872)
..
T Consensus 85 ~~ 86 (89)
T 3d2w_A 85 HN 86 (89)
T ss_dssp --
T ss_pred Cc
Confidence 64
No 295
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.38 E-value=7.4e-13 Score=123.64 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=66.6
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcE-----EEEEecC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR-----IKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~-----L~V~~s~ 352 (872)
...+|||+|||+++++++|+++|++||.|..|++... |||||+|.+.++|++||+.|||..|+|++ |+|..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 3578999999999999999999999999999998644 99999999999999999999999999998 7777776
Q ss_pred CCc
Q 002871 353 PGG 355 (872)
Q Consensus 353 p~~ 355 (872)
++.
T Consensus 93 ~~~ 95 (115)
T 3beg_B 93 PRS 95 (115)
T ss_dssp ---
T ss_pred CCC
Confidence 643
No 296
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.37 E-value=3.4e-13 Score=122.22 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
..+.++|||+|||+++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |++..+.|++|.|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45678999999999999999999999999775511 346789999999999999999998 9999999999999999
Q ss_pred CCCCC
Q 002871 267 IPKDN 271 (872)
Q Consensus 267 ~pk~~ 271 (872)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 297
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.37 E-value=2.1e-12 Score=128.24 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC-CCcccEEEEEeCCHHHHHHHHHHhcCccccc--ceeeeeecCC
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA-CKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIP 268 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~-~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~g--r~L~V~~a~p 268 (872)
....+|||+||++.+++++|+++|++||+|.+|++. .+.+|||||+|.+.++|++|++.|+|..|.+ ++|+|+|+.+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 345679999999999999999999999999999863 4468899999999999999999999999965 9999999987
Q ss_pred CC
Q 002871 269 KD 270 (872)
Q Consensus 269 k~ 270 (872)
+.
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 298
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1e-12 Score=117.73 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=68.4
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
..++|||+|||+++++++|+++|++||.|.+|........||||+|.+.++|.+|++ |+|..|+|+.|+|+++.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 456899999999999999999999999999985433222299999999999999999 999999999999998876543
No 299
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=3.1e-13 Score=115.98 Aligned_cols=71 Identities=25% Similarity=0.428 Sum_probs=65.9
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.++ ..++|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999876 34568999999999999999999999 9999999999986
No 300
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.36 E-value=1.4e-12 Score=122.48 Aligned_cols=77 Identities=17% Similarity=0.358 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
+.++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|+ .|++..|.|+.|.|+|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999874 4678999999999999999999 799999999999999987
Q ss_pred CCC
Q 002871 268 PKD 270 (872)
Q Consensus 268 pk~ 270 (872)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 301
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.36 E-value=1.6e-12 Score=115.99 Aligned_cols=76 Identities=22% Similarity=0.458 Sum_probs=63.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcc--cccceeeeeecCC
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSIP 268 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~--l~gr~L~V~~a~p 268 (872)
..+.++|||+|||+++|+++|+++|++||+|.+|++...++|||||+|.+.++|++ +++.. +.|++|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 45789999999999999999999999999999999777799999999999999983 45555 4599999999987
Q ss_pred CC
Q 002871 269 KD 270 (872)
Q Consensus 269 k~ 270 (872)
+.
T Consensus 84 k~ 85 (89)
T 3d2w_A 84 KH 85 (89)
T ss_dssp --
T ss_pred CC
Confidence 54
No 302
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=3.3e-13 Score=115.78 Aligned_cols=71 Identities=17% Similarity=0.417 Sum_probs=66.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002871 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
++|||+|||+++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++.++ ..+.|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57999999999999999999999999988874 45678999999999999999999988 9999999999986
No 303
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.36 E-value=1.5e-12 Score=129.05 Aligned_cols=84 Identities=20% Similarity=0.403 Sum_probs=74.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002871 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 188 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
+....+.++|||+|||+.+++++|+++|++||.|..|.+ ++.++|||||+|.+.++|++|+..|+|..|.|++|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567899999999999999999999999999999874 455789999999999999999999999999999999
Q ss_pred eeecCCCCC
Q 002871 263 IHFSIPKDN 271 (872)
Q Consensus 263 V~~a~pk~~ 271 (872)
|.|+.++..
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999976543
No 304
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1e-12 Score=122.17 Aligned_cols=81 Identities=19% Similarity=0.429 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
..+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++. ++..|.|++|.|++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 345689999999999999999999999999998874 356789999999999999999996 99999999999999
Q ss_pred cCCCCCC
Q 002871 266 SIPKDNP 272 (872)
Q Consensus 266 a~pk~~~ 272 (872)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9877543
No 305
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=9.9e-13 Score=123.26 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=69.3
Q ss_pred cccceee--eccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCcee-----CCcEEEEEe
Q 002871 278 NQGTLVV--FNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI-----NGKRIKLEP 350 (872)
Q Consensus 278 ~~~tLfV--~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l-----~Gr~L~V~~ 350 (872)
...+||| +||+.++++++|+++|++||.|.+|.+. ..+|||||+|.+.++|++|+++|||++| .|++|.|.+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 4678999 6699999999999999999999999885 3589999999999999999999999998 789999999
Q ss_pred cCCC
Q 002871 351 SRPG 354 (872)
Q Consensus 351 s~p~ 354 (872)
++..
T Consensus 103 a~~~ 106 (114)
T 2cq2_A 103 VEKV 106 (114)
T ss_dssp ESCC
T ss_pred cccC
Confidence 8754
No 306
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.36 E-value=1.9e-12 Score=124.99 Aligned_cols=80 Identities=19% Similarity=0.379 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE----------EeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccce
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTL----------YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 260 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v----------~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~ 260 (872)
..++++|||+|||+++++++|+++|++||.|..| ..+++++|||||+|.+.++|.+|+..|+|..|.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4567999999999999999999999999987552 246789999999999999999999999999999999
Q ss_pred eeeeecCCCC
Q 002871 261 LDIHFSIPKD 270 (872)
Q Consensus 261 L~V~~a~pk~ 270 (872)
|.|.|+.+..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 307
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.2e-13 Score=124.90 Aligned_cols=80 Identities=14% Similarity=0.161 Sum_probs=71.3
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCe-EEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEV-KEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V-~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
....+|||+|||+++++++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. |+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 356799999999999999999999999999 66765 356789999999999999999996 999999999999999
Q ss_pred CCCccc
Q 002871 352 RPGGAR 357 (872)
Q Consensus 352 ~p~~~r 357 (872)
.++..+
T Consensus 92 ~~~~~~ 97 (114)
T 2cpy_A 92 TLEDMR 97 (114)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 876543
No 308
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=126.30 Aligned_cols=80 Identities=26% Similarity=0.372 Sum_probs=71.6
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEE--------E--EeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEE
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKE--------I--RETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~--------v--ri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~ 347 (872)
...+|||+|||+.+|+++|+++|++||.|.. + ..+++++|||||+|.+.++|.+|++.|||..|.|++|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4678999999999999999999999998765 3 23678899999999999999999999999999999999
Q ss_pred EEecCCCccc
Q 002871 348 LEPSRPGGAR 357 (872)
Q Consensus 348 V~~s~p~~~r 357 (872)
|.++++...+
T Consensus 124 V~~a~~~~~~ 133 (143)
T 3egn_A 124 VQFARSARPK 133 (143)
T ss_dssp EEECCCSCC-
T ss_pred EEECCCCCCc
Confidence 9999876544
No 309
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2.5e-12 Score=115.95 Aligned_cols=74 Identities=18% Similarity=0.346 Sum_probs=66.2
Q ss_pred CCcE-EEEcCCCCCCCHHH----HHHHhhcc-CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002871 193 PSRT-LFVRNINSNVEDLE----LRSLFEQY-GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 193 ~srt-LfV~NLP~~vteee----Lr~lFs~f-G~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
++.| |||+|||+.+++++ |+++|++| |+|.+| + .|+|||+|.+.++|++|++.|+|..+.|++|+|.|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 4555 99999999999988 55899999 599998 2 299999999999999999999999999999999999
Q ss_pred CCCCC
Q 002871 267 IPKDN 271 (872)
Q Consensus 267 ~pk~~ 271 (872)
..+.+
T Consensus 82 ~~~sd 86 (96)
T 2diu_A 82 PKNRE 86 (96)
T ss_dssp CCSCC
T ss_pred CCCcc
Confidence 76654
No 310
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.34 E-value=4.7e-13 Score=129.34 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=69.4
Q ss_pred cccceeeeccCCccchhhHhhhhcccCC---eEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~---V~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
...+|||+|||+++|+++|+++|++||. |.+|++ .++++|||||+|.+.++|++|++ |||..|+|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4678999999999999999999999998 777755 35678999999999999999999 999999999999999
Q ss_pred cCCCc
Q 002871 351 SRPGG 355 (872)
Q Consensus 351 s~p~~ 355 (872)
+.++.
T Consensus 122 a~~~e 126 (136)
T 2hgl_A 122 SHRTE 126 (136)
T ss_dssp CCHHH
T ss_pred CChHH
Confidence 87554
No 311
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=117.57 Aligned_cols=72 Identities=26% Similarity=0.385 Sum_probs=65.2
Q ss_pred cceeeeccCCccchhh----Hhhhhccc-CCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002871 280 GTLVVFNLDASVSNDD----LRQIFGAY-GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 280 ~tLfV~NLp~~~Teed----L~e~Fs~f-G~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
++|||+|||+++++++ |+++|++| |+|.+| + .|+|||+|.+.++|.+|++.|+|..+.||+|+|.+++.+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 3499999999999988 55899999 599998 3 299999999999999999999999999999999999887
Q ss_pred cc
Q 002871 355 GA 356 (872)
Q Consensus 355 ~~ 356 (872)
..
T Consensus 85 sd 86 (96)
T 2diu_A 85 RE 86 (96)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 312
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=4e-12 Score=120.91 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=66.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccE-EEEEeCCHHHHHHHHHHhcCccccc--ceeeeeecCCCC
Q 002871 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPKD 270 (872)
Q Consensus 196 tLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~-AFVeF~d~e~A~~Ai~~Lng~~l~g--r~L~V~~a~pk~ 270 (872)
.|||+||++.+++++|+++|++||+|.+|++..+ .|| |||+|.+.++|++|++.|+|..|.| ++|+|.|+.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 4679999999999999999999999999986444 486 9999999999999999999999987 699999998764
No 313
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.1e-12 Score=122.12 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDI-RTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I-~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...+.++|||+|||+++++++|+++|++||.| ..|++ +++++|||||+|.+.++|++|++. ++..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567999999999999999999999999999 56653 367899999999999999999996 9999999999999
Q ss_pred ecCCC
Q 002871 265 FSIPK 269 (872)
Q Consensus 265 ~a~pk 269 (872)
++.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98654
No 314
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.33 E-value=7.6e-13 Score=124.22 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=68.8
Q ss_pred cccceeeeccCCccchhhHhhhhcccCC---eEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~---V~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
...+|||+|||+++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++||+ |||..|+|+.|+|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 4678999999999999999999999998 777765 35678999999999999999999 999999999999999
Q ss_pred cCCC
Q 002871 351 SRPG 354 (872)
Q Consensus 351 s~p~ 354 (872)
+.++
T Consensus 95 a~~~ 98 (118)
T 2db1_A 95 SHRT 98 (118)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 315
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.1e-12 Score=115.95 Aligned_cols=79 Identities=24% Similarity=0.441 Sum_probs=67.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCC
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 271 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 271 (872)
.++++|||+|||+++++++|+++|++||+|..|++...++|||||+|.+.++|++|.. ....+.+++|.|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCC
Confidence 3579999999999999999999999999999999776789999999999999986533 13445899999999987654
Q ss_pred C
Q 002871 272 P 272 (872)
Q Consensus 272 ~ 272 (872)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 316
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=1.1e-13 Score=128.83 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=72.8
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEE--------EEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCC
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDING 343 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~--------vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~G 343 (872)
...++|||+|||.++++++|+++|++||.|.. |++ ++.++|||||+|.+.++|++|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35679999999999999999999999999988 654 34568999999999999999999999999999
Q ss_pred cEEEEEecCCCccc
Q 002871 344 KRIKLEPSRPGGAR 357 (872)
Q Consensus 344 r~L~V~~s~p~~~r 357 (872)
++|+|++++++..+
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999887543
No 317
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.8e-12 Score=120.48 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=67.5
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
...+|||+|||+++++++|+++|+.| .|..|++. ++++|||||+|.+.++|++|| .||+..|+||.|+|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 35689999999999999999999999 89898773 567899999999999999999 6999999999999988864
No 318
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.2e-12 Score=119.80 Aligned_cols=78 Identities=13% Similarity=0.205 Sum_probs=68.8
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
....+|||+|||+++|+++|+++|++||.| +|++ +++++|||||+|.+.++|++||+ +|+..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 345799999999999999999999999955 7765 45678999999999999999995 89999999999999987
Q ss_pred CCcc
Q 002871 353 PGGA 356 (872)
Q Consensus 353 p~~~ 356 (872)
+...
T Consensus 91 ~~~~ 94 (102)
T 1wez_A 91 TAGT 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7553
No 319
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.32 E-value=2.3e-12 Score=120.29 Aligned_cols=77 Identities=14% Similarity=0.239 Sum_probs=65.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccce-----eeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK-----LDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~-----L~V~~ 265 (872)
.+..++|||+|||+++++++|+++|++||+|..|.+... |||||+|.+.++|++|++.|++..|.|++ +.|..
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 355789999999999999999999999999999987533 99999999999999999999999999998 66665
Q ss_pred cCCC
Q 002871 266 SIPK 269 (872)
Q Consensus 266 a~pk 269 (872)
+.+.
T Consensus 91 ~~~~ 94 (115)
T 3beg_B 91 DGPR 94 (115)
T ss_dssp CC--
T ss_pred CCCC
Confidence 5443
No 320
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.32 E-value=4.1e-13 Score=130.23 Aligned_cols=120 Identities=12% Similarity=0.079 Sum_probs=69.3
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe
Q 002871 232 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE 311 (872)
Q Consensus 232 G~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri 311 (872)
|+|+.+|..++.+..++..+... ..+....-.... ...........+|||+|||+++|+++|+++|++|| |.+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~--~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i 77 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGD--SEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI 77 (139)
T ss_dssp ----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCC--cccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE
Confidence 57788888887777777654433 233222111111 11112223457899999999999999999999999 668876
Q ss_pred C----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002871 312 T----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 312 ~----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
. ++++|||||+|.+.++|++|| .+|+..|+|+.|+|.++.+...
T Consensus 78 ~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 78 EIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 3 467899999999999999999 7999999999999999887654
No 321
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.8e-12 Score=117.41 Aligned_cols=79 Identities=9% Similarity=0.194 Sum_probs=69.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
.....++|||+|||+++++++|+++|++||.| .|++ +++++|||||+|.+.++|++|++ +++..|.++.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34567899999999999999999999999965 6653 46789999999999999999995 899999999999998
Q ss_pred cCCCC
Q 002871 266 SIPKD 270 (872)
Q Consensus 266 a~pk~ 270 (872)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86554
No 322
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.32 E-value=9.3e-13 Score=119.56 Aligned_cols=80 Identities=24% Similarity=0.496 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
.+.+.++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ ++..+.|+.|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3456799999999999999999999999999999874 45688999999999999999998 89999999999999
Q ss_pred cCCCCC
Q 002871 266 SIPKDN 271 (872)
Q Consensus 266 a~pk~~ 271 (872)
+.++..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 876543
No 323
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1e-12 Score=116.17 Aligned_cols=78 Identities=21% Similarity=0.351 Sum_probs=67.5
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCccc
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 357 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r 357 (872)
..++|||+|||.++++++|+++|++||.|.+|++...++|||||+|.+.++|++|+. ....+.|++|+|.+++++..+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCCC
Confidence 357899999999999999999999999999999977789999999999999976432 123569999999999987653
No 324
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=4.9e-13 Score=126.17 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=68.7
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEE-E----eCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI-R----ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~v-r----i~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
...+|||+|||+++++++|+++|++||.|..+ . .+++++|||||+|.+.++|++||+ |||..|+|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45799999999999999999999999998652 2 245678999999999999999999 99999999999999997
Q ss_pred CCc
Q 002871 353 PGG 355 (872)
Q Consensus 353 p~~ 355 (872)
++.
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 325
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=1.9e-13 Score=127.36 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccc
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--------LYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 257 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~--------v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~ 257 (872)
..+.++|||+|||.++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456899999999999999999999999999987 552 3567899999999999999999999999999
Q ss_pred cceeeeeecCCCCCC
Q 002871 258 RRKLDIHFSIPKDNP 272 (872)
Q Consensus 258 gr~L~V~~a~pk~~~ 272 (872)
|++|.|+++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 326
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=8.9e-13 Score=124.41 Aligned_cols=77 Identities=9% Similarity=0.170 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE---E--eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTL---Y--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v---~--~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
....++|||+|||+++++++|+++|++||.|..+ . .+++++|||||+|.+.++|++|+. |++..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999998542 2 356789999999999999999999 999999999999999
Q ss_pred cCC
Q 002871 266 SIP 268 (872)
Q Consensus 266 a~p 268 (872)
+.+
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 327
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.31 E-value=7.8e-13 Score=121.69 Aligned_cols=78 Identities=14% Similarity=0.105 Sum_probs=70.3
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCC---eEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGE---VKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~---V~~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
....+|||+|||+++|+++|+++|+.||. |..|++. ++++|||||+|.+.++|++|++ |+|..|+|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 35678999999999999999999999988 8888763 4678999999999999999999 99999999999999
Q ss_pred ecCCCc
Q 002871 350 PSRPGG 355 (872)
Q Consensus 350 ~s~p~~ 355 (872)
++.++.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 987654
No 328
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.30 E-value=1.1e-12 Score=137.19 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=71.3
Q ss_pred cccceeeeccCCccchhhHhhhhcccC--CeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG--~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
...+|||+||++++|+++|+++|++|| .|++|++ +++++|||||+|.+.++|++||+.|||+.|.|++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 356899999999999999999999999 9999976 456799999999999999999999999999999999999
Q ss_pred cCCCc
Q 002871 351 SRPGG 355 (872)
Q Consensus 351 s~p~~ 355 (872)
+++..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 98654
No 329
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.30 E-value=1.3e-12 Score=111.64 Aligned_cols=70 Identities=19% Similarity=0.456 Sum_probs=64.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002871 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 196 tLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
+|||+|||+++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++ +++..+.|++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999874 35689999999999999999999 5899999999999875
No 330
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.30 E-value=3.9e-12 Score=111.67 Aligned_cols=72 Identities=18% Similarity=0.377 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccce
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 260 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~f----G-------~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~ 260 (872)
++.++|||+|||+++++++|+++|++| | .|.++++. +.+|||||+|.+.++|++|+ .|++..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 457999999999999999999999999 8 99999764 56999999999999999999 89999999999
Q ss_pred eeeee
Q 002871 261 LDIHF 265 (872)
Q Consensus 261 L~V~~ 265 (872)
|.|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99974
No 331
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.30 E-value=2.5e-12 Score=121.47 Aligned_cols=78 Identities=19% Similarity=0.369 Sum_probs=71.0
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
...++|||+|| ++++++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|||..|.|++|+|.+++++..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 34679999996 69999999999999999999885 6789999999999999999999999999999999999998754
Q ss_pred c
Q 002871 357 R 357 (872)
Q Consensus 357 r 357 (872)
.
T Consensus 114 ~ 114 (121)
T 2bz2_A 114 L 114 (121)
T ss_dssp -
T ss_pred C
Confidence 3
No 332
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.30 E-value=1.4e-12 Score=122.31 Aligned_cols=77 Identities=6% Similarity=0.102 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~---I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 346799999999999999999999999998 666653 36789999999999999999999 9999999999999
Q ss_pred eecCC
Q 002871 264 HFSIP 268 (872)
Q Consensus 264 ~~a~p 268 (872)
.++.+
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98754
No 333
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.30 E-value=4.1e-12 Score=111.51 Aligned_cols=71 Identities=21% Similarity=0.396 Sum_probs=66.1
Q ss_pred cccceeeeccCCccchhhHhhhhccc----C-------CeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEE
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAY----G-------EVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 346 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~f----G-------~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L 346 (872)
..++|||+|||.++++++|+++|++| | .|.++++. ..+|||||+|.+.++|.+|+ .|||..|.|++|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 46799999999999999999999999 8 89999885 45899999999999999999 999999999999
Q ss_pred EEEe
Q 002871 347 KLEP 350 (872)
Q Consensus 347 ~V~~ 350 (872)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 334
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.29 E-value=7.5e-13 Score=113.12 Aligned_cols=70 Identities=19% Similarity=0.398 Sum_probs=64.6
Q ss_pred ceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 281 tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
+|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++ +++..+.|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999763 4568999999999999999999 5899999999999875
No 335
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.29 E-value=6.3e-12 Score=128.15 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHh--cCcccccceeeeeecCCCCCCCC-----ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC
Q 002871 240 DIRAARTAMRAL--QNKPLRRRKLDIHFSIPKDNPSE-----KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET 312 (872)
Q Consensus 240 d~e~A~~Ai~~L--ng~~l~gr~L~V~~a~pk~~~~~-----~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~ 312 (872)
+.+.+..|++.. ....+.+....|........+.. .....++|||+|||+++++++|+++|++||.|..|++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567888888766 44455666566665532222221 22346799999999999999999999999999999763
Q ss_pred ----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002871 313 ----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 313 ----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
+.++|||||+|.+.++|.+|+..+ +..++|++|+|.+++.-
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 567899999999999999999865 46999999999987653
No 336
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.29 E-value=2.9e-12 Score=134.15 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG--~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
..++|||+|||+++|+++|+++|++|| +|.+|++ +++++|||||+|.+.++|++||+.|++..|.|++|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 9999874 567899999999999999999999999999999999999
Q ss_pred cCC
Q 002871 266 SIP 268 (872)
Q Consensus 266 a~p 268 (872)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 853
No 337
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.29 E-value=1.6e-12 Score=117.91 Aligned_cols=79 Identities=24% Similarity=0.477 Sum_probs=70.8
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
....++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ ++..|+|++|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345689999999999999999999999999999976 34578999999999999999999 999999999999999
Q ss_pred CCCcc
Q 002871 352 RPGGA 356 (872)
Q Consensus 352 ~p~~~ 356 (872)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 87643
No 338
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.29 E-value=6.1e-12 Score=126.61 Aligned_cols=80 Identities=23% Similarity=0.425 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC----CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~----~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
...+.++|||+|||+++++++|+++|++||+|..|.+. +.++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999853 56889999999999999999999999999999999999
Q ss_pred cCCC
Q 002871 266 SIPK 269 (872)
Q Consensus 266 a~pk 269 (872)
+.+.
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8653
No 339
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.29 E-value=6.3e-12 Score=118.75 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCC
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 270 (872)
..+.++|||+|| ++++++|+++|++||+|..|.+. +++|||||+|.+.++|++|++.|++..+.|++|.|.|+.++.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 456899999996 79999999999999999999763 789999999999999999999999999999999999997764
Q ss_pred C
Q 002871 271 N 271 (872)
Q Consensus 271 ~ 271 (872)
.
T Consensus 113 ~ 113 (121)
T 2bz2_A 113 M 113 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 340
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.28 E-value=2.2e-12 Score=124.62 Aligned_cols=77 Identities=6% Similarity=0.081 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~---I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 456799999999999999999999999998 666652 36789999999999999999999 9999999999999
Q ss_pred eecCC
Q 002871 264 HFSIP 268 (872)
Q Consensus 264 ~~a~p 268 (872)
.++.+
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 98753
No 341
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.27 E-value=2.3e-12 Score=118.51 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~---I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|+. +++..+.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 356799999999999999999999999998 777763 36789999999999999999999 9999999999999
Q ss_pred eecCC
Q 002871 264 HFSIP 268 (872)
Q Consensus 264 ~~a~p 268 (872)
.++.+
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 99864
No 342
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.26 E-value=6.6e-12 Score=126.35 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=72.2
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
..++|||+||++.+++++|+++|++||.|+.|++. +.++|||||+|.+.++|++|++.|||..|+|++|+|+++.+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 46799999999999999999999999999999874 45689999999999999999999999999999999999987
Q ss_pred Cc
Q 002871 354 GG 355 (872)
Q Consensus 354 ~~ 355 (872)
..
T Consensus 167 ~~ 168 (177)
T 2f3j_A 167 QI 168 (177)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 343
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.25 E-value=8.8e-12 Score=131.24 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=70.4
Q ss_pred ccccceeeeccCCcc---------chhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCcee------
Q 002871 277 VNQGTLVVFNLDASV---------SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI------ 341 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~---------TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l------ 341 (872)
...++|||+||+..+ ++++|+++|++||.|.+|++. .++|||||+|.+.++|++|+++|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 356899999999998 899999999999999999986 4689999999999999999999999999
Q ss_pred ------CCcEEEEEecCCCcc
Q 002871 342 ------NGKRIKLEPSRPGGA 356 (872)
Q Consensus 342 ------~Gr~L~V~~s~p~~~ 356 (872)
.|+.|.|.||+....
T Consensus 211 e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TGGGGGGSCCCEEEECC----
T ss_pred cccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 344
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=5.4e-12 Score=117.27 Aligned_cols=75 Identities=8% Similarity=0.149 Sum_probs=67.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
...++|||+|||+++++++|+++|++| .|..|++ .++++|||||+|.+.++|++|+ .+++..|.|+.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 345899999999999999999999999 8888874 3678999999999999999999 599999999999998774
Q ss_pred C
Q 002871 268 P 268 (872)
Q Consensus 268 p 268 (872)
+
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 345
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.8e-11 Score=113.82 Aligned_cols=72 Identities=14% Similarity=0.269 Sum_probs=61.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----C---CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----A---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~---~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
...++|||+|||+++++++|+++|++||+|. +.+ + ++++|||||+|.+.++|++|++.|+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4579999999999999999999999999999 552 1 5789999999999999999999884 356666666
Q ss_pred eec
Q 002871 264 HFS 266 (872)
Q Consensus 264 ~~a 266 (872)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 544
No 346
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.23 E-value=1.3e-11 Score=129.87 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCccc-----
Q 002871 191 EHPSRTLFVRNINSNV---------EDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL----- 256 (872)
Q Consensus 191 e~~srtLfV~NLP~~v---------teeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l----- 256 (872)
....++|||+||+..+ ++++|+++|++||+|.+|++. .++|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 4578999999999998 799999999999999999864 5799999999999999999999999999
Q ss_pred -------ccceeeeeecCCCCCC
Q 002871 257 -------RRRKLDIHFSIPKDNP 272 (872)
Q Consensus 257 -------~gr~L~V~~a~pk~~~ 272 (872)
.|+.|.|.|+..+.++
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-----
T ss_pred ccccccCCCCEEEEEEccCCCCH
Confidence 8999999999866544
No 347
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.23 E-value=4.5e-12 Score=122.89 Aligned_cols=79 Identities=9% Similarity=0.182 Sum_probs=68.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
.....++|||+|||+++|+++|+++|++|| |..|++ .++++|||||+|.+.++|++|+ .+++..|.++.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999 667773 3578999999999999999999 6999999999999999
Q ss_pred cCCCC
Q 002871 266 SIPKD 270 (872)
Q Consensus 266 a~pk~ 270 (872)
+.++.
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87654
No 348
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.22 E-value=1.2e-11 Score=117.87 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=67.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE--EEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIR--TLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~--~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
.....++|||+|||+++|+++|+++|++| .|. .|++ .++++|||||+|.+.++|++|++ +++..|.|+.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 34567899999999999999999999999 666 7763 36789999999999999999998 5789999999999
Q ss_pred eecCC
Q 002871 264 HFSIP 268 (872)
Q Consensus 264 ~~a~p 268 (872)
.++.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 349
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=115.39 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=67.2
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeC--------CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~--------~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
..++|||+|||+++++++|+++|++||.|. +.+. ++++|||||+|.+.++|++|++.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 467899999999999999999999999999 6542 4678999999999999999999995 5899999988
Q ss_pred ecCCCcccc
Q 002871 350 PSRPGGARR 358 (872)
Q Consensus 350 ~s~p~~~r~ 358 (872)
.+.+...+.
T Consensus 84 ~~~~~~~~~ 92 (114)
T 2dnl_A 84 SSPTIKDKP 92 (114)
T ss_dssp CCSSSCSEE
T ss_pred cCCCcCCCe
Confidence 776655443
No 350
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.22 E-value=5.4e-12 Score=120.37 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=67.1
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeE--EEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVK--EIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~--~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...+|||+|||+++|+++|+++|++| .|. +|++. ++++|||||+|.+.++|++|++ +++..|+|+.|+|.++
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEEC
Confidence 46789999999999999999999999 676 78763 5678999999999999999998 5789999999999998
Q ss_pred CCCc
Q 002871 352 RPGG 355 (872)
Q Consensus 352 ~p~~ 355 (872)
.++.
T Consensus 119 ~~~e 122 (126)
T 2hgm_A 119 SQEE 122 (126)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6543
No 351
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.22 E-value=2.7e-11 Score=111.75 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=66.9
Q ss_pred cccceeeeccCC-----ccchhhHhhhhcccCCeEEEEeC------CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEE
Q 002871 278 NQGTLVVFNLDA-----SVSNDDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 346 (872)
Q Consensus 278 ~~~tLfV~NLp~-----~~TeedL~e~Fs~fG~V~~vri~------~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L 346 (872)
.+++|+|+||.. +.++++|+++|++||.|.+|++. ++++|||||+|.+.++|.+|++.|||+.++||+|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 467899999963 23789999999999999999763 3568999999999999999999999999999999
Q ss_pred EEEecCC
Q 002871 347 KLEPSRP 353 (872)
Q Consensus 347 ~V~~s~p 353 (872)
+|.++.+
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999975
No 352
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=2.3e-12 Score=122.34 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=67.2
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCe----EEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEV----KEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V----~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
...+|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. |+..|+|+.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 35689999999999999999999999975 45544 466789999999999999999995 9999999999999
Q ss_pred ecCCCc
Q 002871 350 PSRPGG 355 (872)
Q Consensus 350 ~s~p~~ 355 (872)
.+.++.
T Consensus 101 ~a~~~e 106 (123)
T 2dha_A 101 RSTAAE 106 (123)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 886543
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=3.4e-11 Score=111.66 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=69.4
Q ss_pred ccccceeeeccCCcc-----------chhhHhhhhcccCCeEEEEe-CCCCccEEEEEECCHHHHHHHHHHhCCceeCCc
Q 002871 277 VNQGTLVVFNLDASV-----------SNDDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALRALNRSDINGK 344 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~-----------TeedL~e~Fs~fG~V~~vri-~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr 344 (872)
...++|+|+||.... ++++|+++|++||.|.+|.+ ...++|||||+|.+.++|++|++.|||..|+|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 457899999994432 25899999999999999976 345789999999999999999999999999999
Q ss_pred EEEEEecCCCcc
Q 002871 345 RIKLEPSRPGGA 356 (872)
Q Consensus 345 ~L~V~~s~p~~~ 356 (872)
+|+|.++.++..
T Consensus 93 ~l~v~~a~~~~~ 104 (112)
T 2dit_A 93 QITAQAWDGTTD 104 (112)
T ss_dssp ECEEEECCSCCC
T ss_pred EEEEEEeCCCCC
Confidence 999999988653
No 354
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=6.2e-11 Score=109.93 Aligned_cols=82 Identities=17% Similarity=0.278 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCCCCC-----------HHHHHHHhhccCCeEEEEe-CCCcccEEEEEeCCHHHHHHHHHHhcCcccc
Q 002871 190 GEHPSRTLFVRNINSNVE-----------DLELRSLFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLR 257 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vt-----------eeeLr~lFs~fG~I~~v~~-~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~ 257 (872)
...++++|+|+||....+ +++|+++|++||+|..|.+ ...++|||||+|.+.++|++|++.|+|..|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456799999999954332 6899999999999999874 3457999999999999999999999999999
Q ss_pred cceeeeeecCCCCC
Q 002871 258 RRKLDIHFSIPKDN 271 (872)
Q Consensus 258 gr~L~V~~a~pk~~ 271 (872)
|++|.|.|+.++..
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999977654
No 355
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=7.4e-12 Score=118.88 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=66.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCe----EEEE----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDI----RTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I----~~v~----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
.+.++|||+|||+++|+++|+++|++||.| ..|+ .+++++|||||+|.+.++|++|++. ++..|.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999975 3444 2567899999999999999999995 999999999999
Q ss_pred eecCC
Q 002871 264 HFSIP 268 (872)
Q Consensus 264 ~~a~p 268 (872)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87743
No 356
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.18 E-value=3.7e-11 Score=137.14 Aligned_cols=80 Identities=26% Similarity=0.453 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002871 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
..+.++|||+|||+.+|+++|+++|++||.|..|.+ ++.++|||||+|.+.++|.+||..|+|..|.|++|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346789999999999999999999999999999975 466899999999999999999999999999999999999
Q ss_pred cCCCC
Q 002871 266 SIPKD 270 (872)
Q Consensus 266 a~pk~ 270 (872)
+.++.
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 97543
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.17 E-value=7.7e-11 Score=108.72 Aligned_cols=77 Identities=16% Similarity=0.253 Sum_probs=67.8
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEeC------CCcccEEEEEeCCHHHHHHHHHHhcCcccccce
Q 002871 192 HPSRTLFVRNINS-----NVEDLELRSLFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 260 (872)
Q Consensus 192 ~~srtLfV~NLP~-----~vteeeLr~lFs~fG~I~~v~~~------~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~ 260 (872)
.++++|+|+||.. +-++++|+++|++||+|.+|++. ++++|||||+|.+.++|.+|++.|+|+.+.|++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5689999999963 23789999999999999999842 367999999999999999999999999999999
Q ss_pred eeeeecCC
Q 002871 261 LDIHFSIP 268 (872)
Q Consensus 261 L~V~~a~p 268 (872)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999853
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.13 E-value=3.1e-11 Score=114.83 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=68.0
Q ss_pred cceeeecc----CCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECC----HHH----HHHHHH--HhCCce
Q 002871 280 GTLVVFNL----DASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYD----VRA----AEAALR--ALNRSD 340 (872)
Q Consensus 280 ~tLfV~NL----p~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~----~e~----A~kAl~--~LnG~~ 340 (872)
..|||+|| ++.+++++|+++|+.||+|.+|++ ++.++|||||+|.+ +++ |.+|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999999965 67789999999996 333 899988 789999
Q ss_pred eCCcEEEEEecCCCcc
Q 002871 341 INGKRIKLEPSRPGGA 356 (872)
Q Consensus 341 l~Gr~L~V~~s~p~~~ 356 (872)
|+|++|+|.+-+.+..
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999999988766
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.09 E-value=2.1e-10 Score=105.72 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=65.6
Q ss_pred cccceeeecc--CCcc--------chhhHhhhhcccCCeEEEEeCC-------CCccEEEEEECCHHHHHHHHHHhCCce
Q 002871 278 NQGTLVVFNL--DASV--------SNDDLRQIFGAYGEVKEIRETP-------HKRHHKFIEFYDVRAAEAALRALNRSD 340 (872)
Q Consensus 278 ~~~tLfV~NL--p~~~--------TeedL~e~Fs~fG~V~~vri~~-------~skGfaFVeF~~~e~A~kAl~~LnG~~ 340 (872)
++++|+|.|+ +..+ .+++|++.|++||.|.+|++.. +++|++||+|.+.++|.+|+++|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4667889987 3233 3478999999999999998742 458999999999999999999999999
Q ss_pred eCCcEEEEEecCCC
Q 002871 341 INGKRIKLEPSRPG 354 (872)
Q Consensus 341 l~Gr~L~V~~s~p~ 354 (872)
++||+|+|.++.+.
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998653
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.08 E-value=2.2e-10 Score=116.68 Aligned_cols=75 Identities=12% Similarity=0.299 Sum_probs=67.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
..++|||+|||+++++++|+++|++||.|..|++ .+.++|||||+|.+.++|++|+..+ +..+.|++|.|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4589999999999999999999999999999974 3668999999999999999999854 5689999999998753
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.7e-10 Score=105.64 Aligned_cols=67 Identities=24% Similarity=0.283 Sum_probs=60.5
Q ss_pred CCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002871 288 DASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 288 p~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
+..+++++|+++|++||.|.+|++.++++|||||+|.+.++|++|++.++ .+.|++|+|+|++++..
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCC
Confidence 35789999999999999999999988899999999999999999999754 47899999999987754
No 362
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.06 E-value=9.5e-11 Score=111.51 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=64.5
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCC----HHH----HHHHHH--HhcCcc
Q 002871 195 RTLFVRNI----NSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYD----IRA----ARTAMR--ALQNKP 255 (872)
Q Consensus 195 rtLfV~NL----P~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d----~e~----A~~Ai~--~Lng~~ 255 (872)
+.|||+|| |+.+++++|+++|+.||+|.+|. .++.++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 99999999999999999999987 367899999999996 333 888988 789999
Q ss_pred cccceeeeeecC
Q 002871 256 LRRRKLDIHFSI 267 (872)
Q Consensus 256 l~gr~L~V~~a~ 267 (872)
|.|++|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999753
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.05 E-value=4.2e-10 Score=103.71 Aligned_cols=77 Identities=16% Similarity=0.330 Sum_probs=67.1
Q ss_pred CCCCcEEEEcCC--CCCCC--------HHHHHHHhhccCCeEEEEeC-------CCcccEEEEEeCCHHHHHHHHHHhcC
Q 002871 191 EHPSRTLFVRNI--NSNVE--------DLELRSLFEQYGDIRTLYTA-------CKHRGFVMISYYDIRAARTAMRALQN 253 (872)
Q Consensus 191 e~~srtLfV~NL--P~~vt--------eeeLr~lFs~fG~I~~v~~~-------~ksrG~AFVeF~d~e~A~~Ai~~Lng 253 (872)
..|++.|.++|+ |.++. +++|++.|++||+|.+|++. .+++|+|||+|.+.++|.+|++.|+|
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 357899999998 44443 37899999999999999853 24689999999999999999999999
Q ss_pred cccccceeeeeecC
Q 002871 254 KPLRRRKLDIHFSI 267 (872)
Q Consensus 254 ~~l~gr~L~V~~a~ 267 (872)
+.+.|++|.|.|+.
T Consensus 82 ~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVVTKYCD 95 (105)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCCEEEEEEeC
Confidence 99999999999975
No 364
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.4e-09 Score=99.51 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=64.1
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002871 194 SRTLFVRNIN-------SNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 194 srtLfV~NLP-------~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
.++|.|.-.. .++++++|+++|++||+|..|++.++++|||||+|.+.++|++|++.+++ +.+++|.|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 4566666544 46899999999999999999998788999999999999999999997544 67999999998
Q ss_pred CCCC
Q 002871 267 IPKD 270 (872)
Q Consensus 267 ~pk~ 270 (872)
.++.
T Consensus 88 ~~~~ 91 (100)
T 2d9o_A 88 EGQP 91 (100)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.03 E-value=1.6e-10 Score=106.27 Aligned_cols=68 Identities=29% Similarity=0.414 Sum_probs=59.5
Q ss_pred eeccCCccchhhHhhhh------------cccCCeEEEEeCC----CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEE
Q 002871 284 VFNLDASVSNDDLRQIF------------GAYGEVKEIRETP----HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (872)
Q Consensus 284 V~NLp~~~TeedL~e~F------------s~fG~V~~vri~~----~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~ 347 (872)
+.||+..+++++|++.| ++||.|.+|++.. +++|||||+|.+.++|.+|++.|||+.++||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777888887777666 9999999998853 4689999999999999999999999999999999
Q ss_pred EEec
Q 002871 348 LEPS 351 (872)
Q Consensus 348 V~~s 351 (872)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.01 E-value=5.7e-10 Score=123.28 Aligned_cols=75 Identities=19% Similarity=0.340 Sum_probs=65.9
Q ss_pred CCCCcEEEEcC--CCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccc---cc--eeee
Q 002871 191 EHPSRTLFVRN--INSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR---RR--KLDI 263 (872)
Q Consensus 191 e~~srtLfV~N--LP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~---gr--~L~V 263 (872)
..++++|||+| |++.+|+++|+++|++||+|.+|.+. .+||||||+|.+.++|++|++.|||+.+. |+ +|+|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 56789999999 57899999999999999999999754 58999999999999999999999999873 33 5777
Q ss_pred eec
Q 002871 264 HFS 266 (872)
Q Consensus 264 ~~a 266 (872)
.|+
T Consensus 94 ~~~ 96 (345)
T 3tht_A 94 NFV 96 (345)
T ss_dssp EEC
T ss_pred EEe
Confidence 775
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.97 E-value=7.3e-10 Score=122.44 Aligned_cols=75 Identities=23% Similarity=0.341 Sum_probs=66.2
Q ss_pred ccccceeeec--cCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeC---Cc--EEEEE
Q 002871 277 VNQGTLVVFN--LDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDIN---GK--RIKLE 349 (872)
Q Consensus 277 ~~~~tLfV~N--Lp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~---Gr--~L~V~ 349 (872)
..+.+|||+| |+..+|+++|+++|++||+|++|.+.. +||||||+|.+.++|++|+++|||+++. |+ .|.|.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 3567999999 578999999999999999999998854 7899999999999999999999999883 44 67888
Q ss_pred ecC
Q 002871 350 PSR 352 (872)
Q Consensus 350 ~s~ 352 (872)
|..
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 875
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.95 E-value=9.8e-10 Score=103.51 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=64.4
Q ss_pred cccceeeeccCCc-----cchhhHhhhhcccCCeEEEEeC---------CCCccEEEEEECCHHHHHHHHHHhCCceeCC
Q 002871 278 NQGTLVVFNLDAS-----VSNDDLRQIFGAYGEVKEIRET---------PHKRHHKFIEFYDVRAAEAALRALNRSDING 343 (872)
Q Consensus 278 ~~~tLfV~NLp~~-----~TeedL~e~Fs~fG~V~~vri~---------~~skGfaFVeF~~~e~A~kAl~~LnG~~l~G 343 (872)
.+++|+|+|+-.. -.+++|++.|++||.|.+|++. ++++|++||+|.+.++|.+|+++|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4678999998421 2368999999999999999752 2346999999999999999999999999999
Q ss_pred cEEEEEecCC
Q 002871 344 KRIKLEPSRP 353 (872)
Q Consensus 344 r~L~V~~s~p 353 (872)
|+|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.92 E-value=1.9e-09 Score=101.03 Aligned_cols=76 Identities=20% Similarity=0.145 Sum_probs=64.3
Q ss_pred cccceeeeccCCc----------cchhhHhhhhcccCCeEEEEeCCC-CccEEEEEECCHHHHHHHHHHhCCceeCCcEE
Q 002871 278 NQGTLVVFNLDAS----------VSNDDLRQIFGAYGEVKEIRETPH-KRHHKFIEFYDVRAAEAALRALNRSDINGKRI 346 (872)
Q Consensus 278 ~~~tLfV~NLp~~----------~TeedL~e~Fs~fG~V~~vri~~~-skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L 346 (872)
.+++|.|+|+=.. -.+++|++.|++||.|.+|.+... .+|++||+|.+.++|.+|++.|||+.++||.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4567888886321 124689999999999999988543 48999999999999999999999999999999
Q ss_pred EEEecCC
Q 002871 347 KLEPSRP 353 (872)
Q Consensus 347 ~V~~s~p 353 (872)
+|.++..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999854
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.89 E-value=7.9e-10 Score=101.66 Aligned_cols=68 Identities=21% Similarity=0.381 Sum_probs=59.2
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeEEEEeC----CCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002871 199 VRNINSNVEDLELRSLF------------EQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 199 V~NLP~~vteeeLr~lF------------s~fG~I~~v~~~----~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
+.+||..+++++|++.| ++||+|.+|++. ++++|||||+|.+.++|++|++.|+|+.+.|++|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 55677777888777666 999999999853 35699999999999999999999999999999999
Q ss_pred eeec
Q 002871 263 IHFS 266 (872)
Q Consensus 263 V~~a 266 (872)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9987
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.88 E-value=3.7e-09 Score=99.55 Aligned_cols=75 Identities=13% Similarity=0.192 Sum_probs=65.1
Q ss_pred CCcEEEEcCCCC--CC---CHHHHHHHhhccCCeEEEEeC---------CCcccEEEEEeCCHHHHHHHHHHhcCccccc
Q 002871 193 PSRTLFVRNINS--NV---EDLELRSLFEQYGDIRTLYTA---------CKHRGFVMISYYDIRAARTAMRALQNKPLRR 258 (872)
Q Consensus 193 ~srtLfV~NLP~--~v---teeeLr~lFs~fG~I~~v~~~---------~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~g 258 (872)
++++|+++|+-. ++ -++||++.|++||+|.+|++. ++++|+|||+|.+.++|.+|++.|+|+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 689999999942 22 378999999999999998732 2456999999999999999999999999999
Q ss_pred ceeeeeecC
Q 002871 259 RKLDIHFSI 267 (872)
Q Consensus 259 r~L~V~~a~ 267 (872)
++|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999974
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.84 E-value=7.5e-09 Score=96.90 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=65.3
Q ss_pred CCCcEEEEcCCCCCC----------CHHHHHHHhhccCCeEEEEeCC-CcccEEEEEeCCHHHHHHHHHHhcCcccccce
Q 002871 192 HPSRTLFVRNINSNV----------EDLELRSLFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQNKPLRRRK 260 (872)
Q Consensus 192 ~~srtLfV~NLP~~v----------teeeLr~lFs~fG~I~~v~~~~-ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~ 260 (872)
.+++.|.++|+=..- -+++|++.|++||.|.+|.+.. ..+|+|||+|.+.++|++|++.|+|+.+.|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 568999999984221 1467899999999999998643 35899999999999999999999999999999
Q ss_pred eeeeecC
Q 002871 261 LDIHFSI 267 (872)
Q Consensus 261 L~V~~a~ 267 (872)
|.|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999974
No 373
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.74 E-value=2.7e-08 Score=89.27 Aligned_cols=84 Identities=21% Similarity=0.308 Sum_probs=72.1
Q ss_pred eeEEeecCCCCCCHHHHHHHHhhcCCceeeEEE-eeeccccc-ceeEEEEEeccChhHHHHHHHHhcCCcccCCC-CccE
Q 002871 713 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLY-LPIDFKNK-CNVGYAFINMVSPSHIISFYEAFNGKKWEKFN-SEKV 789 (872)
Q Consensus 713 TTvMirNIPnk~t~~~L~~~id~~~~g~ydf~Y-lp~df~~~-~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~-s~k~ 789 (872)
|.|+||++|+.+|++.++++|+... ++||+| .|-+...+ +--+.|||||.+++++..|.+.|+|+.|...+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~--~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMP--EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCC--CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcc--cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 7899999999999999999999764 688885 57776654 44578999999999999999999999998754 4578
Q ss_pred EEEEeeecc
Q 002871 790 ASLAYARIQ 798 (872)
Q Consensus 790 ~~v~~A~iQ 798 (872)
+.|.||-.|
T Consensus 80 a~VE~AP~q 88 (91)
T 1uw4_A 80 AIVEFAPFQ 88 (91)
T ss_dssp CEEEECSSC
T ss_pred eEEEEcCCC
Confidence 899999877
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=4.1e-08 Score=87.80 Aligned_cols=74 Identities=27% Similarity=0.429 Sum_probs=62.8
Q ss_pred cccceeeeccCC----ccch----hhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002871 278 NQGTLVVFNLDA----SVSN----DDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 278 ~~~tLfV~NLp~----~~Te----edL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
...||+|.-.+. ..-+ .+|.+.|++||+|..+|+... .+||+|.+.++|.+|++ |||..+.||.|+|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---KMWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---SEEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---CEEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 456888887662 2333 679999999999999998643 38999999999999999 99999999999999
Q ss_pred ecCCCc
Q 002871 350 PSRPGG 355 (872)
Q Consensus 350 ~s~p~~ 355 (872)
+++|.-
T Consensus 82 lkt~dW 87 (91)
T 2dnr_A 82 LKSPSG 87 (91)
T ss_dssp ECCCSS
T ss_pred eCCCCc
Confidence 998864
No 375
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.57 E-value=3.1e-08 Score=89.57 Aligned_cols=84 Identities=21% Similarity=0.362 Sum_probs=70.5
Q ss_pred eeEEeecCCCCCCHHHHHHHHhhcCCceeeEE-Eeeecccccce-eEEEEEeccChhHHHHHHHHhcCCcccCCC-CccE
Q 002871 713 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFL-YLPIDFKNKCN-VGYAFINMVSPSHIISFYEAFNGKKWEKFN-SEKV 789 (872)
Q Consensus 713 TTvMirNIPnk~t~~~L~~~id~~~~g~ydf~-Ylp~df~~~~n-~gyaFinf~~~~~~~~f~~~f~g~~w~~~~-s~k~ 789 (872)
-.|+||++|+.+|++.+++.|+.... .||+ |.|-|...+-+ -..|||||++++++..|.+.|+|+.|...+ .+-.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 57999999999999999999998654 4666 57777766433 367999999999999999999999999753 4578
Q ss_pred EEEEeeecc
Q 002871 790 ASLAYARIQ 798 (872)
Q Consensus 790 ~~v~~A~iQ 798 (872)
+.|.||-.|
T Consensus 88 a~VE~APyq 96 (97)
T 2l08_A 88 AVVEFAPFQ 96 (97)
T ss_dssp EEEEECCCC
T ss_pred eEEEecCCC
Confidence 899999877
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=1.8e-07 Score=88.44 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=70.9
Q ss_pred cccceeeeccCCc-cchhhHhhhhcccCCeEEEEeCCCCccEEEEEECC-HHHHHHHHHHhC--CceeCCcEEEEEecCC
Q 002871 278 NQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD-VRAAEAALRALN--RSDINGKRIKLEPSRP 353 (872)
Q Consensus 278 ~~~tLfV~NLp~~-~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~-~e~A~kAl~~Ln--G~~l~Gr~L~V~~s~p 353 (872)
....|+|+||+.. ++.++|+++|++||+|..|++.... ..|||+|.+ .++|.+|+++|+ |..|.|..++++...-
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 4568999999999 9999999999999999999986433 379999999 899999999995 7799999999987764
Q ss_pred CcccchhhhcC
Q 002871 354 GGARRNLMQQL 364 (872)
Q Consensus 354 ~~~r~~~~~ql 364 (872)
..+ +.|.+.+
T Consensus 96 eeE-~~yw~Ki 105 (121)
T 1owx_A 96 EVE-KEALKKI 105 (121)
T ss_dssp HHH-HHHHHHH
T ss_pred HHH-HHHHHHH
Confidence 433 3355544
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=7.3e-07 Score=84.22 Aligned_cols=75 Identities=16% Similarity=0.144 Sum_probs=64.4
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCC-HHHHHHHHHHhc--Ccccccceeeeeec
Q 002871 191 EHPSRTLFVRNINSN-VEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYD-IRAARTAMRALQ--NKPLRRRKLDIHFS 266 (872)
Q Consensus 191 e~~srtLfV~NLP~~-vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d-~e~A~~Ai~~Ln--g~~l~gr~L~V~~a 266 (872)
-.+.+.|||+||+++ +++++|+++|++||+|..|.+. .....|||+|.+ .++|..|+++++ +..|++..+.++..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~-~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV-RGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECC-TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 356799999999999 9999999999999999999753 344479999999 899999999994 67788887777654
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=1.8e-07 Score=84.19 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=61.6
Q ss_pred ccccceeeeccCCc-----cch----hhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEE
Q 002871 277 VNQGTLVVFNLDAS-----VSN----DDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (872)
Q Consensus 277 ~~~~tLfV~NLp~~-----~Te----edL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~ 347 (872)
....||+|.-++.+ .-+ .+|.+.|..||+|..+|+.... +||+|.+.++|.+||+ |||..+.||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 35679999988643 222 5699999999999999986443 9999999999999999 999999999999
Q ss_pred EEecCC
Q 002871 348 LEPSRP 353 (872)
Q Consensus 348 V~~s~p 353 (872)
|++..+
T Consensus 89 V~~k~~ 94 (95)
T 1ufw_A 89 ISGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EeccCC
Confidence 998665
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=1.1e-06 Score=78.62 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=61.9
Q ss_pred CCCcEEEEcCCC----CCCCH----HHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002871 192 HPSRTLFVRNIN----SNVED----LELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 192 ~~srtLfV~NLP----~~vte----eeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
.+.-||+|.-.+ .+.-+ .+|.+.|++||+|..+++.. +.+||+|.+.++|.+|++ |+|..+.|+.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 467899998876 23333 67899999999999998643 238999999999999999 9999999999999
Q ss_pred eecCCC
Q 002871 264 HFSIPK 269 (872)
Q Consensus 264 ~~a~pk 269 (872)
+++.|.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 998754
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.30 E-value=7.6e-07 Score=91.73 Aligned_cols=63 Identities=19% Similarity=0.246 Sum_probs=56.7
Q ss_pred cchhhHhhhhcccCCeEEEEeC----C-----CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002871 291 VSNDDLRQIFGAYGEVKEIRET----P-----HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 291 ~TeedL~e~Fs~fG~V~~vri~----~-----~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
-.+++|++.|++||.|.++.+. . +++|++||+|.+.++|.+|++.|||+.++||.|+|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4568999999999999999762 2 6789999999999999999999999999999999999753
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.07 E-value=6e-06 Score=85.00 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=56.1
Q ss_pred CCHHHHHHHhhccCCeEEEEeC---------CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002871 206 VEDLELRSLFEQYGDIRTLYTA---------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 206 vteeeLr~lFs~fG~I~~v~~~---------~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
-.+++|++.|++||+|.++.+. ++++|++||+|.+.++|++|++.|+|+.+.||+|.+.|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4578999999999999999741 2688999999999999999999999999999999999974
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=4.8e-06 Score=74.91 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=59.8
Q ss_pred CCCcEEEEcCCCCC-----CCH----HHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002871 192 HPSRTLFVRNINSN-----VED----LELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 192 ~~srtLfV~NLP~~-----vte----eeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
.|.-||+|.-++.. .-+ .+|.+.|++||+|..+++.... +||+|.+.++|.+|++ |+|..+.|+.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 46789999988743 222 5688999999999988853222 9999999999999998 999999999999
Q ss_pred eeecC
Q 002871 263 IHFSI 267 (872)
Q Consensus 263 V~~a~ 267 (872)
|.+-.
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 98753
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=1.2e-05 Score=73.84 Aligned_cols=72 Identities=24% Similarity=0.267 Sum_probs=65.2
Q ss_pred cccceeeeccCCccchhhHhhhhccc-----CCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAY-----GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~f-----G~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
..++|-+-|||..+++..|+.+.+++ |.|+.|.+.+.. +=|+|+|.|...|.+|.-+|+|.+|+|++|+|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 35789999999999999999999999 999999876655 4499999999999999999999999999999854
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.0001 Score=67.79 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=64.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~f-----G~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...++|-+-|||..++++.|+.+.+++ |.|+.+.+.+. .+=|+|+|.|...|-+|.-+|+|..|.|++|++.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 346899999999999999999999999 99999976544 4559999999999999999999999999999985
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=0.00044 Score=62.99 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~f-----G~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
..++|.|.|||..++++.|.-+|+.- |+|..+...+ +-|+|+|.+.+.|++.++ -....|.+.+|.|....
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCC
Confidence 46899999999999999999999972 5899887544 789999999999999997 44678889999997654
Q ss_pred CCCCCCCccccccceeeeccCCccch
Q 002871 268 PKDNPSEKDVNQGTLVVFNLDASVSN 293 (872)
Q Consensus 268 pk~~~~~~~~~~~tLfV~NLp~~~Te 293 (872)
+. ...+|++.+|++.|+.
T Consensus 83 ~~--------~~~r~ll~gl~~~t~~ 100 (104)
T 2dhx_A 83 PR--------APARLLLQGLPPGTSG 100 (104)
T ss_dssp CC--------CCCCCCCCSCCCCCCC
T ss_pred CC--------CcceEeeecCCCCCCC
Confidence 43 3467999999998863
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=0.0005 Score=62.62 Aligned_cols=84 Identities=23% Similarity=0.306 Sum_probs=72.2
Q ss_pred ccceeeeccCCccchhhHhhhhcc-c----CCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002871 279 QGTLVVFNLDASVSNDDLRQIFGA-Y----GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~-f----G~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
..+|.|.|||..+.++.|.-+|+. - |+|..++..+ +-|+|+|.+.+.|++.|+ -..+.|.|.+|.|....+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCC
Confidence 568999999999999999999987 2 6899998765 679999999999999998 226799999999999999
Q ss_pred CcccchhhhcCCh
Q 002871 354 GGARRNLMQQLNQ 366 (872)
Q Consensus 354 ~~~r~~~~~ql~~ 366 (872)
+..++-+++.++.
T Consensus 84 ~~~~r~ll~gl~~ 96 (104)
T 2dhx_A 84 RAPARLLLQGLPP 96 (104)
T ss_dssp CCCCCCCCCSCCC
T ss_pred CCcceEeeecCCC
Confidence 9888877776654
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.79 E-value=0.0016 Score=59.49 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=62.3
Q ss_pred ccceeeeccCCcc-ch----hhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002871 279 QGTLVVFNLDASV-SN----DDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 279 ~~tLfV~NLp~~~-Te----edL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
.++|+|.||+.++ .. +.++++|..|+++.....- ++-.-..|.|.+.++|.+|...||+..+.|++|+|-++++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l-kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE-TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec-CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 3689999998876 33 4568899999987776543 2333579999999999999999999999999999999986
Q ss_pred Cc
Q 002871 354 GG 355 (872)
Q Consensus 354 ~~ 355 (872)
..
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.27 E-value=0.0048 Score=56.36 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=62.5
Q ss_pred CcEEEEcCCCCCC-C----HHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002871 194 SRTLFVRNINSNV-E----DLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 194 srtLfV~NLP~~v-t----eeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
.++|+|.||+.++ . .+.++++|..|+++...... ++-.=..|.|.++++|.+|...|++..+.|+.++|-|+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l-kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE-TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec-CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4789999998765 3 25778999999998887543 3334568999999999999999999999999999999875
Q ss_pred C
Q 002871 269 K 269 (872)
Q Consensus 269 k 269 (872)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.89 E-value=0.023 Score=53.14 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=60.8
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCC-cEEEEEecCC
Q 002871 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDING-KRIKLEPSRP 353 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~G-r~L~V~~s~p 353 (872)
.....|.|.+.++.. ...+.+.|++||+|.+... +....+-.|+|.+..+|++||. .||..|+| -.|-|.+...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCC
Confidence 446779999999886 4556678999999999887 3456899999999999999999 69999985 6677777643
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.82 E-value=0.033 Score=49.81 Aligned_cols=73 Identities=5% Similarity=0.049 Sum_probs=57.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-eCC------CcccEEEEEeCCHHHHHHHHHHhcCcccccc-----eee
Q 002871 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TAC------KHRGFVMISYYDIRAARTAMRALQNKPLRRR-----KLD 262 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-~~~------ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr-----~L~ 262 (872)
++|.|++||+.+||+++.+.+..+.++.... ..+ ..-.-|||.|.+.+++....+.++|..+.+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5899999999999999999999998876554 211 1234699999999999999999999988543 344
Q ss_pred eeecC
Q 002871 263 IHFSI 267 (872)
Q Consensus 263 V~~a~ 267 (872)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.75 E-value=0.07 Score=49.92 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=59.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCccccc-ceeeeeec
Q 002871 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-RKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~g-r~L~V~~a 266 (872)
...+-|.|-+.|+.. ...|...|++||+|.+... ........|.|.++.+|++|+. .||+.+.+ ..|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 346889999999884 7788889999999999865 4566899999999999999998 79999874 55556553
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.18 E-value=0.042 Score=49.59 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=45.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhc
Q 002871 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 252 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Ln 252 (872)
.+.++| ++|+.+...||.++|+.||.|.--.+ ....|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 466777 99999999999999999996532222 35679999999999999999764
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.68 E-value=0.1 Score=47.13 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=43.4
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhC
Q 002871 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN 337 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~Ln 337 (872)
...++| ++|..+...||.++|+.||.|.---+. ...|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 345666 999999999999999999854322222 3469999999999999999763
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.50 E-value=0.057 Score=48.85 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=44.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhc
Q 002871 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 252 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Ln 252 (872)
+.++| ++|+.+...||.++|+.||.|.--.+ ....|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE---ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 45566 99999999999999999995433223 35679999999999999999775
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.18 E-value=0.036 Score=63.31 Aligned_cols=56 Identities=9% Similarity=0.253 Sum_probs=43.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHH
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMR 249 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~ 249 (872)
..|+|||. .|..+++.+|.++|++||+|.++......+-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 35899998 799999999999999999999997665556799999999999997765
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.93 E-value=0.077 Score=50.39 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=56.4
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEE-EeC----------------C--CCccEEEEEECCHHHHHHHHHHhCCc
Q 002871 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEI-RET----------------P--HKRHHKFIEFYDVRAAEAALRALNRS 339 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~v-ri~----------------~--~skGfaFVeF~~~e~A~kAl~~LnG~ 339 (872)
..-|.|.+.|++.+.. +.+.|++||.|.+- ... + ...++..|+|++..+|.+||. -||.
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3468888887776655 55679999998772 111 1 135678999999999999998 7999
Q ss_pred eeCCcEEEEEecCC
Q 002871 340 DINGKRIKLEPSRP 353 (872)
Q Consensus 340 ~l~Gr~L~V~~s~p 353 (872)
.|+|..|-|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999999998854
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.33 E-value=0.28 Score=44.20 Aligned_cols=64 Identities=8% Similarity=0.055 Sum_probs=49.7
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEe-CCC------CccEEEEEECCHHHHHHHHHHhCCceeCC
Q 002871 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-TPH------KRHHKFIEFYDVRAAEAALRALNRSDING 343 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-~~~------skGfaFVeF~~~e~A~kAl~~LnG~~l~G 343 (872)
-+|.|+.||+.+|++++.+.++.+-++..... .++ .-.-|+|.|.+.++...-.+..+|+.+-+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 47999999999999999999988765533322 111 12348999999999999999999997743
No 398
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.69 E-value=0.11 Score=47.04 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=43.3
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhC
Q 002871 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN 337 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~Ln 337 (872)
..++| ++|..+...||.++|+.||.|.---+. ...|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 34556 999999999999999999854332232 3469999999999999999875
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.05 E-value=0.078 Score=60.57 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=43.6
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHH
Q 002871 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALR 334 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~ 334 (872)
..++|+|. .+..+++.+|.+.|++||.|..+........|+.|||.+.+++.+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 35789998 799999999999999999999997766667899999999999997765
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.55 E-value=0.31 Score=46.23 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=54.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-eC----------------C--CcccEEEEEeCCHHHHHHHHHHhcC
Q 002871 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TA----------------C--KHRGFVMISYYDIRAARTAMRALQN 253 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-~~----------------~--ksrG~AFVeF~d~e~A~~Ai~~Lng 253 (872)
....|.|-+.|++ ....+.+.|++||.|.+-. .. + .......|+|.+..+|++|+. .+|
T Consensus 6 ~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 3567888888654 4556778999999987632 10 0 135678999999999999998 899
Q ss_pred cccccceeeeeec
Q 002871 254 KPLRRRKLDIHFS 266 (872)
Q Consensus 254 ~~l~gr~L~V~~a 266 (872)
+.|.|..|-|.+.
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9999987777765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=72.75 E-value=7.7 Score=44.73 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=46.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 002871 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 253 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng 253 (872)
...++|+ +|..+...+|.++|+.||.|.-..+ ....|||.|.+.+.|..+++++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 4578887 9999999999999999997644333 456799999999999999998753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=56.27 E-value=20 Score=41.30 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=44.5
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhC
Q 002871 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN 337 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~Ln 337 (872)
...++|+ ++..+...+|.++|+.||.|.-..++ ...+||.|.+.+.|..+++++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wid---dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECS---SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEc---CCeEEEEECCHHHHHHHHHHHH
Confidence 3456665 88899999999999999976444443 3469999999999999999885
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=23.42 E-value=3.2e+02 Score=24.00 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=56.9
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC-------ceeCCcEEEEEec
Q 002871 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR-------SDINGKRIKLEPS 351 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG-------~~l~Gr~L~V~~s 351 (872)
.+-|.|-|+|..+-..++.-.....|---.|+.. .|.|.|+|.+.++-.-|+..|-. .++.|....|--.
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvist 88 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVIST 88 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEEECC
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeeeeec
Confidence 3457788999999888877777777766666543 47799999999999999988721 1566777666666
Q ss_pred CCCcccch
Q 002871 352 RPGGARRN 359 (872)
Q Consensus 352 ~p~~~r~~ 359 (872)
.|..+.+.
T Consensus 89 ipedeekn 96 (129)
T 4eyt_A 89 IPEDEEKN 96 (129)
T ss_dssp CCHHHHHH
T ss_pred CCchhhhc
Confidence 66555444
Done!