Query 002872
Match_columns 872
No_of_seqs 260 out of 868
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 12:29:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07944 DUF1680: Putative gly 100.0 2E-110 4E-115 974.9 47.6 499 122-644 1-520 (520)
2 COG3533 Uncharacterized protei 100.0 3E-109 8E-114 909.8 35.5 494 114-648 8-505 (589)
3 PF05270 AbfB: Alpha-L-arabino 99.7 5.3E-17 1.1E-21 158.7 8.4 110 736-855 2-116 (142)
4 PF05270 AbfB: Alpha-L-arabino 99.3 3.2E-12 6.9E-17 125.3 9.2 125 686-830 12-142 (142)
5 cd00249 AGE AGE domain; N-acyl 98.7 7.5E-07 1.6E-11 100.4 21.5 295 182-491 55-374 (384)
6 cd00249 AGE AGE domain; N-acyl 98.1 7.2E-05 1.6E-09 84.4 17.5 210 251-467 58-289 (384)
7 PF03663 Glyco_hydro_76: Glyco 97.8 0.00018 4E-09 81.7 13.0 187 182-385 38-256 (370)
8 PF07944 DUF1680: Putative gly 97.7 0.00066 1.4E-08 80.6 16.7 192 246-450 61-267 (520)
9 COG1331 Highly conserved prote 97.6 0.0064 1.4E-07 72.8 22.4 266 166-453 199-573 (667)
10 PF03663 Glyco_hydro_76: Glyco 97.6 0.00025 5.3E-09 80.7 10.2 194 247-453 38-256 (370)
11 PF07470 Glyco_hydro_88: Glyco 97.5 0.006 1.3E-07 68.2 18.8 231 182-453 27-287 (336)
12 cd04791 LanC_SerThrkinase Lant 97.4 0.0032 7E-08 69.3 15.4 182 185-384 88-275 (321)
13 cd04791 LanC_SerThrkinase Lant 97.4 0.011 2.4E-07 65.1 18.9 178 251-454 88-277 (321)
14 COG1331 Highly conserved prote 97.1 0.015 3.2E-07 69.9 17.3 127 251-381 416-566 (667)
15 PF07221 GlcNAc_2-epim: N-acyl 96.7 0.021 4.5E-07 64.1 13.4 182 185-384 86-309 (346)
16 PF07221 GlcNAc_2-epim: N-acyl 96.6 0.038 8.2E-07 62.0 14.8 252 181-446 22-304 (346)
17 cd04792 LanM-like LanM-like pr 96.5 0.15 3.4E-06 63.9 20.6 220 186-452 547-781 (825)
18 PTZ00470 glycoside hydrolase f 96.5 0.098 2.1E-06 62.2 17.7 125 184-329 113-251 (522)
19 cd04434 LanC_like LanC-like pr 96.4 0.4 8.7E-06 52.6 20.8 227 185-453 55-301 (343)
20 COG3533 Uncharacterized protei 96.1 0.021 4.6E-07 66.0 9.3 124 182-330 133-258 (589)
21 PF06662 C5-epim_C: D-glucuron 95.9 0.071 1.5E-06 55.4 11.4 142 180-329 30-188 (189)
22 PF01532 Glyco_hydro_47: Glyco 95.4 0.061 1.3E-06 63.0 9.7 193 251-450 82-312 (452)
23 cd04434 LanC_like LanC-like pr 95.2 0.54 1.2E-05 51.6 15.8 188 185-383 104-299 (343)
24 COG4225 Predicted unsaturated 95.1 0.051 1.1E-06 60.4 7.1 115 251-383 41-169 (357)
25 cd04794 euk_LANCL eukaryotic L 94.8 0.73 1.6E-05 51.8 15.7 193 182-385 103-305 (343)
26 PF07470 Glyco_hydro_88: Glyco 94.8 0.11 2.5E-06 58.0 9.2 134 305-461 30-167 (336)
27 cd04792 LanM-like LanM-like pr 94.7 1.4 3.1E-05 55.4 19.6 215 191-447 502-732 (825)
28 COG4403 LcnDR2 Lantibiotic mod 94.4 0.36 7.7E-06 59.6 12.5 119 183-328 699-821 (963)
29 PF06662 C5-epim_C: D-glucuron 94.0 0.22 4.7E-06 51.9 8.3 131 307-444 37-186 (189)
30 COG2942 N-acyl-D-glucosamine 2 93.9 1 2.2E-05 51.5 14.0 195 172-384 110-337 (388)
31 cd04793 LanC LanC is the cycla 93.8 1.9 4.1E-05 49.1 16.5 181 197-384 120-327 (382)
32 COG4225 Predicted unsaturated 91.6 0.57 1.2E-05 52.4 7.9 138 301-461 37-178 (357)
33 cd04794 euk_LANCL eukaryotic L 91.6 2.3 5E-05 47.8 13.1 131 184-330 169-300 (343)
34 PF01532 Glyco_hydro_47: Glyco 91.5 2.8 6.1E-05 49.3 14.1 263 182-452 79-389 (452)
35 PTZ00470 glycoside hydrolase f 89.7 11 0.00023 45.4 16.8 257 183-452 158-455 (522)
36 PF00759 Glyco_hydro_9: Glycos 89.3 8.7 0.00019 44.7 15.6 128 198-330 93-245 (444)
37 cd04793 LanC LanC is the cycla 88.9 5.9 0.00013 45.2 13.6 145 180-329 172-322 (382)
38 COG2942 N-acyl-D-glucosamine 2 88.6 4.2 9.1E-05 46.6 11.8 141 182-329 176-332 (388)
39 KOG2787 Lanthionine synthetase 86.2 3.6 7.7E-05 45.9 9.1 116 197-330 239-356 (403)
40 KOG2429 Glycosyl hydrolase, fa 81.4 13 0.00028 44.3 11.5 157 150-329 227-400 (622)
41 KOG2244 Highly conserved prote 79.1 10 0.00022 45.0 9.6 140 183-328 508-671 (786)
42 KOG2244 Highly conserved prote 78.6 54 0.0012 39.3 15.1 118 145-283 418-543 (786)
43 PF06917 Pectate_lyase_2: Peri 77.0 4.8 0.0001 47.3 6.3 71 253-328 391-465 (557)
44 PLN02909 Endoglucanase 76.4 46 0.001 39.7 14.3 121 197-327 118-264 (486)
45 PF05147 LANC_like: Lanthionin 76.3 3.9 8.4E-05 45.4 5.3 178 189-384 115-308 (355)
46 PLN02175 endoglucanase 76.0 17 0.00038 43.2 10.7 103 265-384 194-309 (484)
47 PLN00119 endoglucanase 74.9 41 0.0009 40.2 13.4 125 198-328 116-265 (489)
48 PF15095 IL33: Interleukin 33; 74.5 31 0.00066 36.8 10.7 115 671-800 130-246 (268)
49 PLN02266 endoglucanase 71.4 73 0.0016 38.4 14.4 156 167-328 91-280 (510)
50 PF05147 LANC_like: Lanthionin 71.0 13 0.00028 41.2 7.9 134 182-329 169-303 (355)
51 PLN02345 endoglucanase 69.6 46 0.001 39.6 12.2 123 198-326 81-228 (469)
52 COG4403 LcnDR2 Lantibiotic mod 66.5 87 0.0019 39.7 13.8 155 194-376 661-819 (963)
53 KOG2431 1, 2-alpha-mannosidase 63.3 9.6 0.00021 44.0 4.7 81 250-330 179-271 (546)
54 PLN02340 endoglucanase 62.9 1.1E+02 0.0025 37.6 14.0 125 198-328 115-264 (614)
55 PLN02613 endoglucanase 62.8 1.1E+02 0.0024 36.8 13.6 122 197-328 110-257 (498)
56 PLN02308 endoglucanase 57.4 1.5E+02 0.0033 35.5 13.6 123 199-327 112-261 (492)
57 TIGR02474 pec_lyase pectate ly 55.4 14 0.0003 41.2 4.2 51 417-470 44-94 (290)
58 PLN02420 endoglucanase 54.5 2E+02 0.0043 34.9 13.9 169 154-328 69-276 (525)
59 PLN02171 endoglucanase 53.7 1.3E+02 0.0027 37.3 12.3 124 199-328 116-265 (629)
60 PLN03009 cellulase 51.3 2.4E+02 0.0052 34.0 13.9 164 153-327 55-264 (495)
61 KOG2430 Glycosyl hydrolase, fa 51.0 1.2E+02 0.0026 34.5 10.3 144 166-330 235-389 (587)
62 PF06917 Pectate_lyase_2: Peri 49.9 54 0.0012 39.0 7.9 87 182-281 386-472 (557)
63 PF09492 Pec_lyase: Pectic aci 48.8 35 0.00076 38.0 6.0 90 359-455 48-146 (289)
64 PF05592 Bac_rhamnosid: Bacter 48.1 1.2E+02 0.0027 35.9 11.0 132 185-329 155-311 (509)
65 PF13243 Prenyltrans_1: Prenyl 47.2 16 0.00034 33.6 2.6 40 186-227 29-68 (109)
66 KOG2787 Lanthionine synthetase 47.1 67 0.0015 36.3 7.7 109 265-384 241-360 (403)
67 COG1188 Ribosome-associated he 38.5 56 0.0012 30.9 4.7 37 579-624 33-69 (100)
68 TIGR02474 pec_lyase pectate ly 37.7 2.3E+02 0.0049 31.8 10.1 88 186-281 50-149 (290)
69 PF12273 RCR: Chitin synthesis 35.8 23 0.00051 34.5 2.0 25 3-27 1-25 (130)
70 PHA02651 IL-1 receptor antagon 33.8 29 0.00063 35.5 2.3 29 783-812 115-143 (165)
71 PF13249 Prenyltrans_2: Prenyl 32.1 1.2E+02 0.0026 27.6 6.1 60 205-280 42-103 (113)
72 PF09492 Pec_lyase: Pectic aci 29.2 2E+02 0.0044 32.2 8.1 88 184-282 43-145 (289)
73 COG1339 Transcriptional regula 28.3 57 0.0012 34.4 3.3 51 568-625 145-204 (214)
74 TIGR03000 plancto_dom_1 Planct 27.5 3.1E+02 0.0068 24.7 7.3 21 565-590 3-23 (75)
75 KOG2204 Mannosyl-oligosacchari 27.2 5.3E+02 0.011 31.5 11.2 32 194-227 344-375 (625)
76 cd02889 SQCY Squalene cyclase 26.8 5.9E+02 0.013 28.2 11.5 44 183-228 95-140 (348)
77 PF05726 Pirin_C: Pirin C-term 26.4 1.3E+02 0.0028 28.0 5.2 51 581-644 30-86 (104)
78 TIGR01507 hopene_cyclase squal 25.0 2.6E+02 0.0057 34.6 8.9 104 166-281 364-483 (635)
79 TIGR01577 oligosac_amyl oligos 24.6 5.5E+02 0.012 31.6 11.5 124 189-328 303-449 (616)
80 TIGR01787 squalene_cyclas squa 23.8 2.5E+02 0.0054 34.8 8.3 80 197-281 382-472 (621)
81 cd00100 IL1 Interleukin-1 homo 22.9 50 0.0011 33.1 1.8 28 783-812 103-130 (144)
82 PF00340 IL1: Interleukin-1 / 22.3 67 0.0014 31.1 2.5 28 784-813 80-107 (120)
83 PF14200 RicinB_lectin_2: Rici 21.5 4.5E+02 0.0098 23.9 7.8 43 766-812 48-91 (105)
84 PF13464 DUF4115: Domain of un 21.3 5.5E+02 0.012 22.4 9.4 25 563-592 38-62 (77)
85 smart00125 IL1 Interleukin-1 h 20.8 60 0.0013 32.7 1.9 28 783-812 106-133 (147)
No 1
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=100.00 E-value=1.7e-110 Score=974.93 Aligned_cols=499 Identities=37% Similarity=0.644 Sum_probs=456.9
Q ss_pred CeEecCCCchHHHHHHHHhhhhccccchhhHhHHHhcCCCCCCCCCCCCC--CCCcCcccchhhHHHHHHHHHHHhcCCh
Q 002872 122 DVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWE--EPSCELRGHFVGHYLSASALMWASTHNE 199 (872)
Q Consensus 122 ~VrL~~~~~~~~~~~~~~~yLl~ld~drlL~nFR~~AGl~~~g~~ygGWE--~~~~~l~Gh~~GhyLsA~A~~~a~t~D~ 199 (872)
+|||++ ++|+++|+++++|++.+++|||+++||.+|||+.++.++|||| +++..++||++||||||+|++|+.++|+
T Consensus 1 ~V~l~~-~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~D~ 79 (520)
T PF07944_consen 1 DVRLTD-GFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTGDP 79 (520)
T ss_pred CeEECc-HHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCCCH
Confidence 699995 7999999999999999999999999999999999999999999 8899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccc----cchHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002872 200 SLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAP----YYTIHKILAGLLDQYTYADNAEALRMTTWMV 275 (872)
Q Consensus 200 ~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~p----yy~~HkI~aGLld~y~~tG~~~aL~va~~~a 275 (872)
+|++|++++|+.|++||+ +||||+++++.. ..+.+..|+| +|++|||++||+|+|++|||+++|+|++|++
T Consensus 80 ~l~~~~d~~V~~l~~~Q~--~dGYl~~~~~~~---~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~a 154 (520)
T PF07944_consen 80 ELKAKADEIVDELAAAQQ--PDGYLGTYPEER---NFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERALDVATKLA 154 (520)
T ss_pred HHHHHHHHHHHHHHHhcc--CCceeccccccc---ccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 999999999999999999 999999998753 2245678999 9999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhcccccccch--hhccCCCCCCCcccCCc
Q 002872 276 EYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGL--LALQADDISGFHSNTHI 353 (872)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F~~~~~~~~--l~~~~D~l~g~Hanthi 353 (872)
||+.++.... ..+..+.++.+|+|||+++|+|||++|||++||+||++|++..++++ +..+.|.+++.|+|+++
T Consensus 155 d~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~~a~~~~ 230 (520)
T PF07944_consen 155 DWVYRRLSRL----GPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGRHANTHI 230 (520)
T ss_pred HHHHHHhccC----CHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCcccccee
Confidence 9996554432 22233344567999999999999999999999999999999988888 88889999999999999
Q ss_pred chhh-------HHHHHHHHhCChHHHHHHHHHHHHHhccCeeeecCCCCC---CCCCCCcccccCCCCCcccccchHHHH
Q 002872 354 PIVI-------GSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVG---EFWSDPKRLASNLDSNTEESCTTYNML 423 (872)
Q Consensus 354 P~~~-------G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~Y~TGG~g~~---E~f~~p~~L~~~l~~~~~ETCas~nml 423 (872)
|.++ |++++|++|||+.|++++++||+.|+++|||+|||+|++ |+|++++++++ ...++|||++||||
T Consensus 231 ~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~--~~~~~EtCas~~~~ 308 (520)
T PF07944_consen 231 GHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPN--RLAYAETCASVNMM 308 (520)
T ss_pred eEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCc--CCCCccccHHHHHH
Confidence 9888 999999999999999999999999999999999999998 99999999987 45569999999999
Q ss_pred HHHHHHhcccCCchhHHHHHHHHhhhhcccCCCCCCCcEEEeccCCCCCCCcccccCCCCCCCCccccCCCCCCcccccc
Q 002872 424 KVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLG 503 (872)
Q Consensus 424 kl~~~Lf~~tgd~~YaD~~ERaLyN~iLa~q~~~d~g~~~Y~~PL~~g~~k~~~~~~~~t~~~~F~CC~gtg~e~~akl~ 503 (872)
|++++||++|||++|+|+|||++||++||+|++ |+++++|+|||+++..+... ..+++++++||||+||++|+++||+
T Consensus 309 ~~~~~L~~~tgd~~yaD~~Er~lyN~~la~~~~-d~~~~~Y~~pl~~~~~~~~~-~~~~~~~~~~~CC~~n~~r~~~~~~ 386 (520)
T PF07944_consen 309 KLARRLFRLTGDARYADYYERALYNALLAGQSP-DGGSFFYFNPLNSGPYKHRW-KNYRTPWFSFWCCPGNGARGWAKLP 386 (520)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHhcccccccCC-CCCeeEEecCCccCcCcccc-ccccCCCCCCCCCcchHHHHHHHHh
Confidence 999999999999999999999999999999997 99999999999987755321 3567788999999999999999999
Q ss_pred cceEEeecCCCCcEEEEEeeCcEEEEeeCc--eEEEEEECCCCCCCCceEEEEEEEeCCCCeeeEEEEeccCCccCCCcE
Q 002872 504 DSIYFEEEGKYPGVYIIQYISSRLDWKSGQ--IVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAK 581 (872)
Q Consensus 504 ~~IY~~~~~~~~~LyVnLYipStl~~~~~g--v~v~q~t~~~yp~d~~~~VtltV~~~~~~~~ftL~LRIP~Wa~~~~~~ 581 (872)
++||++++ ++||||||+||+++|+.+| |+|+|+|+ |||++ +|+|+|++. ++.+|+|+||||+||+ +++
T Consensus 387 ~~iy~~~~---~~l~v~ly~~s~~~~~~~~~~v~i~q~T~--yP~~~--~v~i~v~~~-~~~~f~l~lRIP~Wa~--~~~ 456 (520)
T PF07944_consen 387 DYIYFRDD---DGLYVNLYIPSELTWPVGGGTVTITQETD--YPFEG--TVRITVSPD-KPVPFTLRLRIPSWAK--GAT 456 (520)
T ss_pred hhheEecC---CEEEEEEEcceEEEEEECCcEEEEEEecC--CCCCC--CEEEEEEcC-CCccEEEEEEccCCCC--CcE
Confidence 99999985 6999999999999999988 77788777 89998 899999765 5889999999999998 799
Q ss_pred EEECCee-cCCCCCCCEEEEEeecCCCCEEEEEecceeEEEecCCCcccccCeEEEeecceeee
Q 002872 582 ATLNGQD-LPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLA 644 (872)
Q Consensus 582 v~VNG~~-~~~~~~ggY~~I~R~Wk~GD~I~L~LPm~lr~~~~~d~~~~~~~~vAv~rGPlVlA 644 (872)
|+|||++ .....++||++|+|+|++||+|+|+|||++|++++++..+...+++||+|||||||
T Consensus 457 i~vNG~~~~~~~~~~gy~~i~r~W~~gD~v~l~lpm~~r~~~~~~~~~~~~~~vAv~rGPlV~a 520 (520)
T PF07944_consen 457 IRVNGEPVVDTAVPGGYLTIEREWKDGDVVELRLPMEVRLEPANPRVPDDPGRVAVMRGPLVYA 520 (520)
T ss_pred EEECCEeCCCCcCCCCeEEEEeeccCCcEEEEEecCeeEEEeCCCCCccCCCeEEEEeCchhcC
Confidence 9999999 55567999999999999999999999999999999666666688999999999998
No 2
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=3.5e-109 Score=909.81 Aligned_cols=494 Identities=26% Similarity=0.427 Sum_probs=447.0
Q ss_pred ceecccCCCeEecCCCchHHHHHHHHhhhhccccchhhHhHHHhcCCCCCCCCCCCCCCCCcCcccchhhHHHHHHHHHH
Q 002872 114 FLKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHYLSASALMW 193 (872)
Q Consensus 114 ~~~p~pl~~VrL~~~~~~~~~~~~~~~yLl~ld~drlL~nFR~~AGl~~~g~~ygGWE~~~~~l~Gh~~GhyLsA~A~~~ 193 (872)
.++|+++++|.+ .+.|..+.++++.++.|+|+++|-.++.|+.+...++||+.+. +.||-+||||||+|+++
T Consensus 8 ~~r~v~v~~~~~------~~~qg~~~d~v~~~~~d~Lldr~~ea~~l~~~d~~r~g~~~q~--f~dsdlgkwlea~A~~l 79 (589)
T COG3533 8 VLRPVTVKDVIF------GQFQGKNRDVVVSLQADRLLDRCHEAAMLPAKDPFRGGWETQM--FWDSDLGKWLEAAAYSL 79 (589)
T ss_pred ccccCCcCchhc------cccccccceeEEecCHHHHHhHhhhccCCCccCcccccceeee--eccccHHHHHHHHHHHH
Confidence 377788777776 3446777889999999999999999999998888999999654 77899999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCch--hhhhhhhcCCCccccchHHHHHHHHHHHHHHcCChhHHHHH
Q 002872 194 ASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTE--QFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMT 271 (872)
Q Consensus 194 a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~--~f~~~~~l~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va 271 (872)
+.++|++|++++|++|++++++|+ +||||+++.+. ...||.+++..|+.||.+|+| +|++|+|++||+.++|+|+
T Consensus 80 ~~~~dp~Lekr~D~vi~~~a~~Qd--edGYl~~~~q~~~pe~Rw~nlr~~HelY~aghLi-eg~va~~qaTGkr~lldV~ 156 (589)
T COG3533 80 ANKGDPELEKRIDEVVEELARAQD--EDGYLGGWFQADFPEERWGNLRPNHELYCAGHLI-EGGVAAHQATGKRRLLDVV 156 (589)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhhc--cCCcccceeeccCchhhhhccccchHHHHhHHHH-hhhhHHHHhhCcchHHHHH
Confidence 999999999999999999999999 99999999764 346899999999977665555 5667999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhcccccccchhhccCCCCCCCcccC
Q 002872 272 TWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNT 351 (872)
Q Consensus 272 ~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~~~D~l~g~Hant 351 (872)
+++|||+.+.|++.+ + +.++.+++++|+++|++||+.|||+|||+||++|.+....+|++.+.|.+.+-||++
T Consensus 157 ~rlADhi~tvfgp~~----~---q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHAvr 229 (589)
T COG3533 157 CRLADHIATVFGPEE----D---QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHAVR 229 (589)
T ss_pred HHHHHhhhhhcCccc----c---ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhHHH
Confidence 999999999887542 2 334557788899999999999999999999999999999999888888888999999
Q ss_pred CcchhhHHHHHHHHhCChHHHHHHHHHHHHHhccCeeeecCCCC-CCCCCCCcccccCCCCCcccccchHHHHHHHHHHh
Q 002872 352 HIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSV-GEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLF 430 (872)
Q Consensus 352 hiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~Y~TGG~g~-~E~f~~p~~L~~~l~~~~~ETCas~nmlkl~~~Lf 430 (872)
+||+.+|+|++|+++||+.++.++++||+.|+++|+|+|||+|+ +|+|+.+|+|++ .+.|+|||+|||||||++||+
T Consensus 230 ~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn--~~~yAEtCas~~l~~~a~Rml 307 (589)
T COG3533 230 QIYLYIGAADLAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPN--RTAYAETCASYNLLKLARRML 307 (589)
T ss_pred HHHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCcc--cchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999965 699999999998 679999999999999999999
Q ss_pred cccCCchhHHHHHHHHhhhhcccCCCCCCCcEEEeccCCCCCCCcccccCCCCCCCCccccCCCCCCcccccccceEEee
Q 002872 431 RWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEE 510 (872)
Q Consensus 431 ~~tgd~~YaD~~ERaLyN~iLa~q~~~d~g~~~Y~~PL~~g~~k~~~~~~~~t~~~~F~CC~gtg~e~~akl~~~IY~~~ 510 (872)
.+++|.+|||+|||+|||++|++|++ |+++|||+|||+.+.. +.+.++.+||||.||++|.++|+++|||...
T Consensus 308 ~~~~d~~yaDvmErALYN~iL~g~sl-Dg~~ffY~nPle~~gr------h~r~~w~~c~CCppn~ar~~as~g~yiY~~~ 380 (589)
T COG3533 308 GWGPDSQYADVMERALYNHILAGQSL-DGGMFFYFNPLESGGR------HSRQKWFSCWCCPPNGARSVASIGDYIYTRA 380 (589)
T ss_pred ccCCCchHHHHHHHHHHhccccccCC-CCCeeEEecchhhCCC------ccccccccCCCCCCcHhhhhhhccceEEccC
Confidence 99999999999999999999999996 9999999999986542 1245678899999999999999999999997
Q ss_pred cCCCCcEEEEEeeCcEEEEeeCceEEEEEECCCCCCCCceEEEEEEEeCCCCeeeEEEEeccCCccCCCcEEEECCeecC
Q 002872 511 EGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLP 590 (872)
Q Consensus 511 ~~~~~~LyVnLYipStl~~~~~gv~v~q~t~~~yp~d~~~~VtltV~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~~~ 590 (872)
+ ++||||||+.|+++.+..+|.|+|+|+ |||++ +|+|+|... .+.+|+|+||||+||. .++++|||+.+.
T Consensus 381 ~---d~lyvnLy~~S~~~l~~~~v~irqet~--yPw~g--~v~ltv~~~-~p~~~tlaLRlP~W~a--~~tl~vNG~~~~ 450 (589)
T COG3533 381 D---DALYVNLYIASTADLPGDDVQIRQETN--YPWSG--QVKLTVERA-QPVLFTLALRLPAWCA--APTLRVNGKEVI 450 (589)
T ss_pred C---CEEEEEEeecccccccccceEEEeccC--CCCcC--eeEEEEecC-CCceEEEEEecccccC--CcEEEEcCcchh
Confidence 6 689999999999999988899999988 89998 899999986 6889999999999999 899999998776
Q ss_pred CCCCCCEEEEEeecCCCCEEEEEecceeEEEecCCCcccccCeE-EEeecceeeeeecc
Q 002872 591 LPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQ-AILYGPYVLAGHSI 648 (872)
Q Consensus 591 ~~~~ggY~~I~R~Wk~GD~I~L~LPm~lr~~~~~d~~~~~~~~v-Av~rGPlVlA~~~~ 648 (872)
....+||++|+|+|++||+|+|.|||++|+...|+++.. + ||+|||||||++..
T Consensus 451 ~~~~~GYa~i~R~Wq~GDrV~L~LpM~vr~y~nP~~r~~----~GAi~rGPlVyc~e~~ 505 (589)
T COG3533 451 QTRGKGYARISREWQAGDRVELMLPMPVRIYANPDVRHD----VGAIMRGPLVYCAEAG 505 (589)
T ss_pred hccCCCeeeeeehhcCCCeEEEeecceeEeecCCcchhh----hhhhhcCCeEEEEecC
Confidence 667899999999999999999999999999888887543 4 99999999998854
No 3
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.68 E-value=5.3e-17 Score=158.74 Aligned_cols=110 Identities=21% Similarity=0.256 Sum_probs=88.8
Q ss_pred ccccCCCCCCCceEEeecCCceEEEecCCCCCC-----CceEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEE
Q 002872 736 SVMLEPFDSPGMLVIQHETDDELVVTDSFIAQG-----SSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTK 810 (872)
Q Consensus 736 ~v~l~p~~~p~~~v~~~~~~~~l~v~~~~~~~~-----~s~f~~vpgl~g~~g~vsles~~~pg~~~~~~~~~~~g~~~~ 810 (872)
++++++++.|++||||.|..+ +|++..++.. |++|+|||||++ +++|||||+++||.||||. +..|+
T Consensus 2 ~~~~~s~~~~~ryirh~~~~~--~~~~v~~~s~~~~r~da~f~vvpGLa~-~~~vSfES~~~PG~yLrh~-----~~~v~ 73 (142)
T PF05270_consen 2 SLRLTSPNYPDRYIRHRGSLV--RLDPVSSSSSALDRADATFRVVPGLAD-SSCVSFESVNYPGYYLRHS-----NFRVR 73 (142)
T ss_dssp EEEEEESSSTTEEEEEETTEE--EEEES-SSGGHHHHHGG-EEEEE-SS--TTCEEEEESSSTTEEEEEE-----TTEEE
T ss_pred eEEEECCCCCCeEEEEcCceE--EEeeccCCcchhhccCceEEEEEccCC-CCEEEEEECCCCCcEEEEE-----CCEEE
Confidence 468999999999999996665 5565555554 899999999998 6899999999999999996 88999
Q ss_pred EEeecCCCccccccccceecccCCCccCCccEEEecCCCcchhcc
Q 002872 811 LGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAP 855 (872)
Q Consensus 811 l~~~~~~~~~~f~~~asF~~~~gl~~y~piSf~a~g~~~~~ll~p 855 (872)
|+ +. +++..|.++|+|...+||+...-+||+...-+..||.+=
T Consensus 74 l~-~~-d~s~~F~~dATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~ 116 (142)
T PF05270_consen 74 LE-KN-DGSALFREDATFCPRPGLAGPGYVSFESYNYPGRYLRHY 116 (142)
T ss_dssp EE-E---SSHHHHHHT-EEEEE-SSSTTEEEEEESSSTTEEEEEE
T ss_pred Ee-ec-CCCccccCCceEEEecCCCCCCcceEEEecCCCeEEEEE
Confidence 99 44 888999999999999999995557999999999998753
No 4
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.34 E-value=3.2e-12 Score=125.33 Aligned_cols=125 Identities=18% Similarity=0.249 Sum_probs=87.4
Q ss_pred eEEEeecCCceeeeecCC-CCCccccceEEEEEecCCCCCccccccCCCCcccccCCCCCCCceEEeecCCceEEEecCC
Q 002872 686 KFVLTNSNQSITMEKFPK-SGTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSF 764 (872)
Q Consensus 686 ~~~~~~~~~~~~~~~~p~-~gt~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v~l~p~~~p~~~v~~~~~~~~l~v~~~~ 764 (872)
.-.+.+.+..+.+.+... .++-..-.++||++.+-.+ ...|++|+-|.||.||||. +..|+++.+.
T Consensus 12 ~ryirh~~~~~~~~~v~~~s~~~~r~da~f~vvpGLa~-----------~~~vSfES~~~PG~yLrh~--~~~v~l~~~d 78 (142)
T PF05270_consen 12 DRYIRHRGSLVRLDPVSSSSSALDRADATFRVVPGLAD-----------SSCVSFESVNYPGYYLRHS--NFRVRLEKND 78 (142)
T ss_dssp TEEEEEETTEEEEEES-SSGGHHHHHGG-EEEEE-SS------------TTCEEEEESSSTTEEEEEE--TTEEEEEE--
T ss_pred CeEEEEcCceEEEeeccCCcchhhccCceEEEEEccCC-----------CCEEEEEECCCCCcEEEEE--CCEEEEeecC
Confidence 334566677777776543 2223345799999964222 2368999999999999998 5555776654
Q ss_pred CCC---CCceEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEEEEeec--CCCccccccccceec
Q 002872 765 IAQ---GSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCIS--ESTEAGFNNAASFVI 830 (872)
Q Consensus 765 ~~~---~~s~f~~vpgl~g~~g~vsles~~~pg~~~~~~~~~~~g~~~~l~~~~--~~~~~~f~~~asF~~ 830 (872)
.+. .|+.|..+|||.+ +|.|||||.++||+||||. +..+.|. +. .+.++.|++++||+.
T Consensus 79 ~s~~F~~dATF~~~~Gl~~-~g~~sfeS~n~Pg~ylrh~-----~~~l~l~-~~~g~d~~~~f~~datf~v 142 (142)
T PF05270_consen 79 GSALFREDATFCPRPGLAG-PGYVSFESYNYPGRYLRHY-----NGELYLA-PIGGYDNTDSFRADATFRV 142 (142)
T ss_dssp SSHHHHHHT-EEEEE-SSS-TTEEEEEESSSTTEEEEEE-----TTEEEEE-ESSSGG-SHHHHHHT-EEE
T ss_pred CCccccCCceEEEecCCCC-CCcceEEEecCCCeEEEEE-----CCEEEEe-cCCCcCcchhhccccEEeC
Confidence 443 7889999999999 7999999999999999997 7889999 32 133677999999973
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.74 E-value=7.5e-07 Score=100.39 Aligned_cols=295 Identities=12% Similarity=0.028 Sum_probs=168.3
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcC-CcceecCCchhhhhhhhcCCCccc-cchHHHHHHHHHHHH
Q 002872 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIG-SGYLSAFPTEQFDRLEALIPVWAP-YYTIHKILAGLLDQY 259 (872)
Q Consensus 182 ~GhyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~-dGYL~a~~~~~f~~~~~l~~~W~p-yy~~HkI~aGLld~y 259 (872)
.+..|-|.|.+|..++|++..+.++..++.|.+.-.... .||+..+...- +.... .+ .|..=.++.|+..+|
T Consensus 55 ~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g----~~~~~--~~~l~~~a~~l~ala~~~ 128 (384)
T cd00249 55 QARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDG----RPVDA--TKDLYSHAFALLAAAQAA 128 (384)
T ss_pred ecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCC----CCccc--ccchHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999988543112 47877764210 00000 01 222223566788999
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhhhhhhccc--ccccccccc--ccccchHHHHHHHHHHcCCHHHHHHhhhccc---cc
Q 002872 260 TYADNAEALRMTTWMVEYFYNRVQNVIKKYS--IERHWQTLN--EEAGGMNDVLYKLFCITQDPKHLMLAHLFDK---PC 332 (872)
Q Consensus 260 ~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~--~~~~~~~l~--~E~GGmneaL~~LY~~TGd~ryL~lA~~F~~---~~ 332 (872)
+++|++++|+.|..+.+++.+++-+.-..+- ...-+.... ....=+.++|.+||++|||++|++.|+.+.+ +.
T Consensus 129 ~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~ 208 (384)
T cd00249 129 KVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDR 208 (384)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887631001110 000011111 1111114689999999999999999975421 11
Q ss_pred ccch----h--hccCC-CCCCCcccCCc-c-----hhhHHHHHHHHhCChHHHHHHHHHHHHHhccCee-e-ecCCCCCC
Q 002872 333 FLGL----L--ALQAD-DISGFHSNTHI-P-----IVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTY-A-TGGTSVGE 397 (872)
Q Consensus 333 ~~~~----l--~~~~D-~l~g~Hanthi-P-----~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~Y-~-TGG~g~~E 397 (872)
+.++ + ....| .+........+ | .+.....+++++||+.|++.++..++.+.+ +.. . +||+-.
T Consensus 209 ~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~-~~~d~~~G~~~~-- 285 (384)
T cd00249 209 FIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALA-LGWDPERGGLYY-- 285 (384)
T ss_pred hcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-hCcCccCCCEEE--
Confidence 1111 0 00011 00000000111 2 123456779999999999999999998875 332 1 232211
Q ss_pred CCCCCcccccCCCCCcccccchHHHHHHHHHHhcccCCchhHHHHHHHHhhhhccc-CCCCCCCcEEEeccCCCCCCCcc
Q 002872 398 FWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGI-QRGTEPGVMIYLLPLAPGSSKER 476 (872)
Q Consensus 398 ~f~~p~~L~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~iLa~-q~~~d~g~~~Y~~PL~~g~~k~~ 476 (872)
.+..+...+ ...+.-.....++++..-.|+++|||.+|.+.++++. +.+... .++..++-+.+..+-+.-....
T Consensus 286 ~~~~~~~~~---~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~-~~~~~~~~d~~~G~w~~~~~~~g~~~~~~- 360 (384)
T cd00249 286 SFLDDGGLL---EDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAW-AYLWRHFIDPEYGLWFGYLDADGKVLLTP- 360 (384)
T ss_pred eeECCCCCc---ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHHHhcCCCCCCcceeeECCCCCCcCCC-
Confidence 011111111 1224444557788888889999999999999998874 333331 2332234455555432111111
Q ss_pred cccCCCCCCCCcccc
Q 002872 477 SYHHWGTPSDSFWCC 491 (872)
Q Consensus 477 ~~~~~~t~~~~F~CC 491 (872)
. ..|.+.++.+-||
T Consensus 361 ~-~~~~~~yH~~~a~ 374 (384)
T cd00249 361 K-GPAKTFYHVVRAL 374 (384)
T ss_pred C-CCCCCCccHHhHH
Confidence 0 3455666666665
No 6
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.13 E-value=7.2e-05 Score=84.40 Aligned_cols=210 Identities=14% Similarity=0.096 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhhh-hcc--ccccccccccc-----cccchHHHHHHHHHHcCCHHHH
Q 002872 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVI-KKY--SIERHWQTLNE-----EAGGMNDVLYKLFCITQDPKHL 322 (872)
Q Consensus 251 I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~-~~~--~~~~~~~~l~~-----E~GGmneaL~~LY~~TGd~ryL 322 (872)
++-++..+|+.+|++++|+.|.+..+++.+.+.... .++ ...+-+.+... +..=+..+|.++|++|||++||
T Consensus 58 ~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l 137 (384)
T cd00249 58 QVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEAR 137 (384)
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHH
Confidence 344566789999999999999999999987653211 111 00000111100 1111236888999999999999
Q ss_pred HHhhhccc---ccc-------cchhhccCCCCCCCcccCCcchhhHHHHHHHHhCChHHHHHHHHHHHHHhccCeee--e
Q 002872 323 MLAHLFDK---PCF-------LGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYA--T 390 (872)
Q Consensus 323 ~lA~~F~~---~~~-------~~~l~~~~D~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~Y~--T 390 (872)
++|+...+ ..+ +.....+....++ .|.|.-.+.+....|++|||+.|++.++..++.+.+ +.+- .
T Consensus 138 ~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~-~~~~~~~ 214 (384)
T cd00249 138 ALAEETIDLLERRFWEDHPGAFDEADPGTPPYRG--SNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILD-RFIDAES 214 (384)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCC--CChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HhcCccc
Confidence 99965421 111 1110000111122 244444466778889999999999999998888875 4432 4
Q ss_pred cCCCCCCCCCCCcccccCCCCCcccccchHHHHHHHHHHhcccCCchhHHHHHHHHhhhhccc-CCCCCCCcEEE-ecc
Q 002872 391 GGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGI-QRGTEPGVMIY-LLP 467 (872)
Q Consensus 391 GG~g~~E~f~~p~~L~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~iLa~-q~~~d~g~~~Y-~~P 467 (872)
|+.- |.+..+..+.........+---..+++++.-+|.++++|.+|.+..++. ++.++.. .++ +.|.++| ..+
T Consensus 215 G~~~--e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~-~~~~~~~~~d~-~~G~~~~~~~~ 289 (384)
T cd00249 215 GVVR--EHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRL-FDLALALGWDP-ERGGLYYSFLD 289 (384)
T ss_pred CeEE--EEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHH-HHHHHHhCcCc-cCCCEEEeeEC
Confidence 5442 4443221111100111122222344566777888889999999999875 4666663 344 5566666 544
No 7
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.80 E-value=0.00018 Score=81.74 Aligned_cols=187 Identities=14% Similarity=0.113 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccccchHHH-HHHHHHHHHH
Q 002872 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHK-ILAGLLDQYT 260 (872)
Q Consensus 182 ~GhyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~pyy~~Hk-I~aGLld~y~ 260 (872)
.++.++++.-.+..++|+++.+.+...+.....-.. +-|...... -..||.=.- +-.+++++|+
T Consensus 38 ~a~~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~---~~~~~~~~~------------~~~~~DD~aw~~la~l~aye 102 (370)
T PF03663_consen 38 QAVMLSALIDYYRRTGDPTYNDLIQNALLNQRGPNY---DSYNPSNGS------------GDRYYDDNAWWALALLRAYE 102 (370)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT---SSS--S------------------BHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhcccc---ccccccccc------------ccCccChHHHHHHHHHHHHH
Confidence 588899999999999998888888877776543331 113222110 001221111 2335679999
Q ss_pred HcCCh-----hHHHHHHHHHHHHHHHhhhhhhccccccccccc----------cccccchHHHHHHHHHHcCCHHHHHHh
Q 002872 261 YADNA-----EALRMTTWMVEYFYNRVQNVIKKYSIERHWQTL----------NEEAGGMNDVLYKLFCITQDPKHLMLA 325 (872)
Q Consensus 261 ~tG~~-----~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l----------~~E~GGmneaL~~LY~~TGd~ryL~lA 325 (872)
.||++ +.|+.|....+++..+.....- ...-+|..- .+.-|..-...++||++|||++||+.|
T Consensus 103 ~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~c--gGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A 180 (370)
T PF03663_consen 103 LTGDQPSDNPKYLDLAKEIFDFLISGWDDTSC--GGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWA 180 (370)
T ss_dssp HH--H-----HHHHHHHHHHHHHHHTB-SGG---GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred hhCCCcchHHHHHHHHHHHHHHHHHhcCCccC--CCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999 9999999999999865543210 011123310 011122346788999999999999999
Q ss_pred hhccc---c-cccchhh-ccCCCC----------CCCcccCCcchhhHHHHHHHHhCCh-HHHHHHHHHHHHHhcc
Q 002872 326 HLFDK---P-CFLGLLA-LQADDI----------SGFHSNTHIPIVIGSQMRYEVTGDQ-LHKTISMFFMDIVNSS 385 (872)
Q Consensus 326 ~~F~~---~-~~~~~l~-~~~D~l----------~g~HanthiP~~~G~a~~Y~~TGD~-~y~~aa~~fwd~V~~~ 385 (872)
++..+ . .++++.- .=.|.+ ...+...+...+.|++.+|++|+++ .|++.++..-+-+.++
T Consensus 181 ~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 181 KKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINH 256 (370)
T ss_dssp HHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 88632 1 2222210 000111 0112222333446788899999887 9999999999988753
No 8
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.73 E-value=0.00066 Score=80.64 Aligned_cols=192 Identities=18% Similarity=0.165 Sum_probs=112.8
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhh--hhhccc------ccccccc-cccc--ccchHHHHHHHHH
Q 002872 246 YTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQN--VIKKYS------IERHWQT-LNEE--AGGMNDVLYKLFC 314 (872)
Q Consensus 246 y~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~--~~~~~~------~~~~~~~-l~~E--~GGmneaL~~LY~ 314 (872)
..+|-|. |+...|..++|+++.+.+.++.+.+.+...+ .+..+. ....|.. .|+- .|-|-++|+.-|+
T Consensus 61 ~~g~wl~-a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~ 139 (520)
T PF07944_consen 61 DVGKWLE-AAAYAYAYTGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYE 139 (520)
T ss_pred cHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHH
Confidence 3445454 5567888999999999999999999765421 011111 1122322 1110 1225589999999
Q ss_pred HcCCHHHHHHhhhccccc--ccchhhccCCCCCCCcccCCcchhhHHHHHHHHhCChHHHHHHHHHHHHHhccCeeeecC
Q 002872 315 ITQDPKHLMLAHLFDKPC--FLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGG 392 (872)
Q Consensus 315 ~TGd~ryL~lA~~F~~~~--~~~~l~~~~D~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~Y~TGG 392 (872)
.||+++.|+.|.++-+-- ....+ +.+.........|-=+.++.+++|++|||++|++.|+.|.+.-...-
T Consensus 140 ~tG~~~~L~v~~k~ad~~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~------ 211 (520)
T PF07944_consen 140 ATGNERALDVATKLADWVYRRLSRL--GPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDP------ 211 (520)
T ss_pred HHCcHHHHHHHHHHHHHHHHHhccC--CHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------
Confidence 999999999998884311 01111 00110011112233344788999999999999999999988532111
Q ss_pred CCCCCCCCCCcccccCCCCCcccccch--HHHHHHHHHHhcccCCchhHHHHHHHHhhhh
Q 002872 393 TSVGEFWSDPKRLASNLDSNTEESCTT--YNMLKVSRHLFRWTKEIAYADYYERSLTNGV 450 (872)
Q Consensus 393 ~g~~E~f~~p~~L~~~l~~~~~ETCas--~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~i 450 (872)
.+ .+.. -+.++.. .....+..+. ..+.+-.-.+++.|||.+|.+..|+..-|-+
T Consensus 212 ~~-~~~~--~d~~~~~-~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~ 267 (520)
T PF07944_consen 212 YD-LAYG--QDHLPGR-HANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVV 267 (520)
T ss_pred Cc-hhhc--CccCCCc-cccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 00 1111 1123321 1122333332 3355566789999999999999999875543
No 9
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0064 Score=72.82 Aligned_cols=266 Identities=19% Similarity=0.179 Sum_probs=154.1
Q ss_pred CCCCCCCCCcCcccchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh--hcCCcceecCCchhhhhhhhcCCCcc
Q 002872 166 PYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQK--EIGSGYLSAFPTEQFDRLEALIPVWA 243 (872)
Q Consensus 166 ~ygGWE~~~~~l~Gh~~GhyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~--~~~dGYL~a~~~~~f~~~~~l~~~W~ 243 (872)
.||||-+.+-.. ..|-|+-+-..+..++|++-.+.+..-.+.++.-== ..+-|+. -|.. ...|-
T Consensus 199 ~~GGfg~~pKFP----~~~~l~~Llr~~~~~~d~~~~~~~~~TL~~ma~GGIyDhlgGGF~-RYSt---------D~~Wl 264 (667)
T COG1331 199 EYGGFGSAPKFP----PPHLLLFLLRYSLRTGDERALDMVLRTLDAMARGGIYDHLGGGFF-RYST---------DREWL 264 (667)
T ss_pred hhCCcCCCCCCC----ChHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCCccccCCcee-eeec---------CCcee
Confidence 577876655333 467788888888889999888888888887753211 0022322 1111 11121
Q ss_pred ------ccchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhhhhc----ccc-----cc---ccc------ccc
Q 002872 244 ------PYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKK----YSI-----ER---HWQ------TLN 299 (872)
Q Consensus 244 ------pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~----~~~-----~~---~~~------~l~ 299 (872)
..|.--.++.....+|++|||+..++++....+|+.+.+...-.+ .+. ++ -|. .+.
T Consensus 265 vPHFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg 344 (667)
T COG1331 265 VPHFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLG 344 (667)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHHHHHhc
Confidence 234555566667789999999999999999999997754210000 000 00 000 000
Q ss_pred -----------------c------------c-------------------------------------ccchHHHHHHHH
Q 002872 300 -----------------E------------E-------------------------------------AGGMNDVLYKLF 313 (872)
Q Consensus 300 -----------------~------------E-------------------------------------~GGmneaL~~LY 313 (872)
. + -|=|..+|++.+
T Consensus 345 ~d~~~~~~~f~vs~~GnfeGrnvL~~~~~~~~~~~~~~~~l~~~r~kL~~~R~~R~~P~~Ddkvlt~wNglmi~aLa~a~ 424 (667)
T COG1331 345 EDAELACKYFDVSEEGNFEGRNVLHVPGPLEEAIEEAEEKLERAREKLLAAREKRKQPSRDDKVLTDWNGLMIAALAEAG 424 (667)
T ss_pred ccHHHHHHHcccCCCCCcCCceeecccCchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCCcceeeccHHHHHHHHHHHH
Confidence 0 0 122457999999
Q ss_pred HHcCCHHHHHHhhhcccccccchhhccCCCCCCCcc----------cCCcchhhHHHHHHHHhCChHHHHHHHHHHHHHh
Q 002872 314 CITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHS----------NTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVN 383 (872)
Q Consensus 314 ~~TGd~ryL~lA~~F~~~~~~~~l~~~~D~l~g~Ha----------nthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~ 383 (872)
+++||++|++.|++-..- +.+.+. .|.|...+- ..+.-.+.|...+|++|+|.+|++.|+.+.+.+.
T Consensus 425 ~~~~d~~~l~~A~~~~~f-i~~~l~--~~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i 501 (667)
T COG1331 425 RVLGDPEYLEAAERAADF-ILDNLY--VDRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEAI 501 (667)
T ss_pred HHcCChHHHHHHHHHHHH-HHHhhc--ccchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 999999999999874210 001111 111211111 1122234678889999999999999999999987
Q ss_pred ccCeeeecCC----CCCCCC-CCCcccccCCCCCcccccchHHHHHHHHHHhcccCCchhHHHHHHHH--hhhhccc
Q 002872 384 SSHTYATGGT----SVGEFW-SDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSL--TNGVLGI 453 (872)
Q Consensus 384 ~~h~Y~TGG~----g~~E~f-~~p~~L~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERaL--yN~iLa~ 453 (872)
.+--=..||. +.+|.- ..+. ...+.-.++=+++.. .-.-+|-++|||.+|.|..|++| +=+.+..
T Consensus 502 ~~f~d~~gGf~~t~~~~~~l~ir~~----~~~D~a~~S~na~~~-~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~~~ 573 (667)
T COG1331 502 ADFWDDEGGFYDTPSDSEDLLIRPK----EPTDGATPSGNAVAA-QALLRLSLLTGDARYLEAAEDILQAFAGLAER 573 (667)
T ss_pred HHhcCCCCCcccCCCcccccccCCC----CCCCCCCCCHHHHHH-HHHHHHHhhcCchhHHHHHHHHHHHHHHHHHh
Confidence 4222223342 112221 1111 111223344444433 34456788999999999999999 5554444
No 10
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.60 E-value=0.00025 Score=80.74 Aligned_cols=194 Identities=16% Similarity=0.084 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhh-hhhccccccccccccccccchHHHHHHHHHHcCCH-----H
Q 002872 247 TIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQN-VIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDP-----K 320 (872)
Q Consensus 247 ~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~-~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~-----r 320 (872)
..|. +.+++|+++.+|+++..+++............. ..... ..........+=+-.++.++|++||++ +
T Consensus 38 ~a~~-~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~DD~aw~~la~l~aye~t~~~~~~~~~ 113 (370)
T PF03663_consen 38 QAVM-LSALIDYYRRTGDPTYNDLIQNALLNQRGPNYDSYNPSN---GSGDRYYDDNAWWALALLRAYELTGDQPSDNPK 113 (370)
T ss_dssp HHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTSSS--S---------BHHHHHHHHHHHHHHHHHH--H-----H
T ss_pred HHHH-HHHHHHHHHHhCcchHHHHHHHHHHHHhccccccccccc---ccccCccChHHHHHHHHHHHHHhhCCCcchHHH
Confidence 3443 456889999999999888887766666433211 10000 000000000000235899999999999 9
Q ss_pred HHHHhhhcccc---cccchh-hcc----C----CCCCCCcccCCcchhhHHHHHHHHhCChHHHHHHHHHHHHHhccCee
Q 002872 321 HLMLAHLFDKP---CFLGLL-ALQ----A----DDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTY 388 (872)
Q Consensus 321 yL~lA~~F~~~---~~~~~l-~~~----~----D~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~Y 388 (872)
||++|+...+. .+.... ..+ . ..-....+.+..|.++..+++|++|||+.|++.|+..|+.+.+.+++
T Consensus 114 yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~ 193 (370)
T PF03663_consen 114 YLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLI 193 (370)
T ss_dssp HHHHHHHHHHHHHHTB-SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB
T ss_pred HHHHHHHHHHHHHHhcCCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeE
Confidence 99999876321 111110 000 0 00000112223333466889999999999999999999998764544
Q ss_pred -e-ecCCCCCCCCCCCcccccCC-CCCcccccchHH---HHHHHHHHhcccCCc-hhHHHHHHHHhhhhccc
Q 002872 389 -A-TGGTSVGEFWSDPKRLASNL-DSNTEESCTTYN---MLKVSRHLFRWTKEI-AYADYYERSLTNGVLGI 453 (872)
Q Consensus 389 -~-TGG~g~~E~f~~p~~L~~~l-~~~~~ETCas~n---mlkl~~~Lf~~tgd~-~YaD~~ERaLyN~iLa~ 453 (872)
. +|-+-.+ +...- -....++-=||| +|.-+..|++.|++. .|.|..++++ |+++..
T Consensus 194 d~~~g~v~Dg--------~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la-~~~~~~ 256 (370)
T PF03663_consen 194 DPSTGLVYDG--------INIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLA-DAAINH 256 (370)
T ss_dssp --TTS-B--E--------E-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHH-HHHHHH
T ss_pred ECCCcEEEeC--------CccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHH-HHHHHH
Confidence 1 1111110 11000 011233333444 566678999999876 9999999987 565554
No 11
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.47 E-value=0.006 Score=68.23 Aligned_cols=231 Identities=15% Similarity=0.073 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccccchHHHHHHHHHHHHHH
Q 002872 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTY 261 (872)
Q Consensus 182 ~GhyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y~~ 261 (872)
-|-++.++..+|..|+|+++++.+..+++.+...+. . ... -+ -|-+-..++..|+.
T Consensus 27 ~G~~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~--~-----~~~----------~d-------~~~~g~~~~~~y~~ 82 (336)
T PF07470_consen 27 NGVFWYGLLEAYEYTGDERYLDYAERWADRFIEEDG--S-----DYN----------LD-------DHDIGFLLLDLYER 82 (336)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--T-----TTS----------CC-------GTTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccC--C-----ccC----------Cc-------hhhhHHHHHHHHHH
Confidence 466778888999999999999999999998887776 2 000 01 11122223578999
Q ss_pred cCChhHHHHHHHHHHHHHHHhhhh-hhccc---cccccccccccccchH-HHHHHHHHHcCCHHHHHHhhhccc---ccc
Q 002872 262 ADNAEALRMTTWMVEYFYNRVQNV-IKKYS---IERHWQTLNEEAGGMN-DVLYKLFCITQDPKHLMLAHLFDK---PCF 333 (872)
Q Consensus 262 tG~~~aL~va~~~ad~~~~~~~~~-~~~~~---~~~~~~~l~~E~GGmn-eaL~~LY~~TGd~ryL~lA~~F~~---~~~ 333 (872)
||+++.++++.+.++++.++..+. ...+. ....+..+..- .|+ ..|++++..|||++|++.|..-.+ ...
T Consensus 83 t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~--~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~ 160 (336)
T PF07470_consen 83 TGDEKYKDAAIQAADWLLARRPRTSDGGFWHNRPYPNQVWIDGM--YMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYL 160 (336)
T ss_dssp H-THHHHHHHHHHHHHHHHTSCBECTGCBECTTTSTTEEETTHH--HHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCceeeccc--cccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhc
Confidence 999999999999999887654321 01110 00111111111 245 688999999999999998864321 112
Q ss_pred cchhhccCCCCCCCcccCCcc---------------hhhHHHHHHHHhCC-----hHHHHHHHHHHHHHhccCeeeecCC
Q 002872 334 LGLLALQADDISGFHSNTHIP---------------IVIGSQMRYEVTGD-----QLHKTISMFFMDIVNSSHTYATGGT 393 (872)
Q Consensus 334 ~~~l~~~~D~l~g~HanthiP---------------~~~G~a~~Y~~TGD-----~~y~~aa~~fwd~V~~~h~Y~TGG~ 393 (872)
+++. +.+ ..|..++.. .+.|.++.|+..-+ +.+++..+.+.+.+.+.+- ..|
T Consensus 161 ~d~~----tGl-~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~-~~G-- 232 (336)
T PF07470_consen 161 YDPE----TGL-YYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD-EDG-- 232 (336)
T ss_dssp B-TT----TSS-BESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST-TTS--
T ss_pred cCCC----CCc-eeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC-CCC--
Confidence 2211 111 112222111 13677888888643 5666666666666654322 222
Q ss_pred CCCCCCCCCcccccCCCCCcccccchHHHHHHH-HH-HhcccCCchhHHHHHHHHhhhhccc
Q 002872 394 SVGEFWSDPKRLASNLDSNTEESCTTYNMLKVS-RH-LFRWTKEIAYADYYERSLTNGVLGI 453 (872)
Q Consensus 394 g~~E~f~~p~~L~~~l~~~~~ETCas~nmlkl~-~~-Lf~~tgd~~YaD~~ERaLyN~iLa~ 453 (872)
.|...-+-+. +..+.||.+|.=+..-. +- ...+..+.+|.+..||++ ++++..
T Consensus 233 ----~w~~~~~~~~--~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~-~~l~~~ 287 (336)
T PF07470_consen 233 ----LWYQDLDDPD--PGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKAL-EALLSN 287 (336)
T ss_dssp ----BEBSBTTTTT--TTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHH-HHHHHC
T ss_pred ----CcceecCCCC--CCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH-HHHHhC
Confidence 2221111111 23567777764222222 11 223344678999999987 777776
No 12
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.40 E-value=0.0032 Score=69.32 Aligned_cols=182 Identities=13% Similarity=-0.025 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccccchHHHHHHHHHHHHHHcCC
Q 002872 185 YLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADN 264 (872)
Q Consensus 185 yLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y~~tG~ 264 (872)
.+-++...+.. +|+++.+.+.++++.|.+......++ . .++.. ......+..=+++ |...|+..|+.||+
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~-~-~~~~~-----~~~~~G~~hG~aG--i~~~L~~l~~~t~d 157 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERGDPA-L-LWPDF-----DRVDHGLLHGWAG--IALFLLRLYKATGD 157 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhccccc-c-ccccC-----CCCCCccccCcHH--HHHHHHHHHHHHCC
Confidence 55566667777 99999999999999998765421111 1 11000 0011122222333 66678889999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhccc--ccccccccccccc--chHHHHHHHHHHcCCHHHHHHhhhcccccccchhhcc
Q 002872 265 AEALRMTTWMVEYFYNRVQNVIKKYS--IERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQ 340 (872)
Q Consensus 265 ~~aL~va~~~ad~~~~~~~~~~~~~~--~~~~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~~ 340 (872)
++.++.+.+..+++.+.+.+.-.... .+.......--+| ||-.++.+||+.|+|++|++.|+...+... . ..
T Consensus 158 ~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~--~--~~ 233 (321)
T cd04791 158 SRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAAL--S--SC 233 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--h--hh
Confidence 99999999999998776532111110 0000000111233 788999999999999999999987643211 0 00
Q ss_pred CCCCCCCcccCCcchhhH--HHHHHHHhCChHHHHHHHHHHHHHhc
Q 002872 341 ADDISGFHSNTHIPIVIG--SQMRYEVTGDQLHKTISMFFMDIVNS 384 (872)
Q Consensus 341 ~D~l~g~HanthiP~~~G--~a~~Y~~TGD~~y~~aa~~fwd~V~~ 384 (872)
...+...|...=++ ....++.++|+.|++.+.+..+.+..
T Consensus 234 ----~~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (321)
T cd04791 234 ----YANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALYLIA 275 (321)
T ss_pred ----ccCccccCCcHhHHHHHHhhcccccChHHHHHHHHHHHHhcc
Confidence 00122334443233 34457899999999999888777764
No 13
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.36 E-value=0.011 Score=65.13 Aligned_cols=178 Identities=14% Similarity=-0.038 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhhhh--cccccc--ccccccccccchHHHHHHHHHHcCCHHHHHHhh
Q 002872 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIK--KYSIER--HWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAH 326 (872)
Q Consensus 251 I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~--~~~~~~--~~~~l~~E~GGmneaL~~LY~~TGd~ryL~lA~ 326 (872)
|..+|+..|+. ++++.++++.+.++++.+...+.-. .+.... .....|. ..|+-.+|.+||+.|||++|++.|+
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~hG-~aGi~~~L~~l~~~t~d~~~l~~A~ 165 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERGDPALLWPDFDRVDHGLLHG-WAGIALFLLRLYKATGDSRYLELAE 165 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhccccccccccCCCCCCccccC-cHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 44556777888 9999999999999999765422100 000000 0001111 1278899999999999999999998
Q ss_pred hcccc---cccchhhc---cCCCCCCCcccCCcchhh--HHHHHHHHhCChHHHHHHHHHHHHHhccCeeeecCCCCCCC
Q 002872 327 LFDKP---CFLGLLAL---QADDISGFHSNTHIPIVI--GSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEF 398 (872)
Q Consensus 327 ~F~~~---~~~~~l~~---~~D~l~g~HanthiP~~~--G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~Y~TGG~g~~E~ 398 (872)
...+. .+...... ..+......+-.|-..-+ ...+.|++|+|+.|++.++...+.+.+..
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~------------ 233 (321)
T cd04791 166 EALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSSC------------ 233 (321)
T ss_pred HHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh------------
Confidence 66321 11100000 000000001122222222 23567899999999999888888775321
Q ss_pred CCCCcccccCCCCCcccccchHHHHHHHHHHhcccCCchhHHHHHHHHhhhhcccC
Q 002872 399 WSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQ 454 (872)
Q Consensus 399 f~~p~~L~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~iLa~q 454 (872)
+ ...+=.|.+.+++.....+.+.++|.+|.+..++.. ..++..-
T Consensus 234 ~-----------~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 277 (321)
T cd04791 234 Y-----------ANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLA-LYLIATA 277 (321)
T ss_pred c-----------cCccccCCcHhHHHHHHhhcccccChHHHHHHHHHH-HHhcccc
Confidence 1 112345777888888899999999999999999865 6777543
No 14
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.015 Score=69.88 Aligned_cols=127 Identities=14% Similarity=0.032 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhhhhccccccccccc-------cccccchHHHHHHHHHHcCCHHHHH
Q 002872 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTL-------NEEAGGMNDVLYKLFCITQDPKHLM 323 (872)
Q Consensus 251 I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l-------~~E~GGmneaL~~LY~~TGd~ryL~ 323 (872)
+.++|..+++++|+++.+++|++.++++.+.+..- .+. .+ +.-+ -+.+.-+..+|..||++|+|.+||+
T Consensus 416 mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~--rl~-~~-~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~ 491 (667)
T COG1331 416 MIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD--RLL-RR-YRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLE 491 (667)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc--chh-ee-eecCcccccccchhHHHHHHHHHHHHHhhCcHHHHH
Confidence 45678889999999999999999999998765321 111 01 1000 0111113368999999999999999
Q ss_pred Hhhhcccc---cccchh-------hccCCCC--CCCcccCCcchh-----hHHHHHHHHhCChHHHHHHHHHHHH
Q 002872 324 LAHLFDKP---CFLGLL-------ALQADDI--SGFHSNTHIPIV-----IGSQMRYEVTGDQLHKTISMFFMDI 381 (872)
Q Consensus 324 lA~~F~~~---~~~~~l-------~~~~D~l--~g~HanthiP~~-----~G~a~~Y~~TGD~~y~~aa~~fwd~ 381 (872)
.|+.+.+. .|.++. ....+.+ ...-.-.-+|-. ....++-.+|||..|.++++...+.
T Consensus 492 ~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a 566 (667)
T COG1331 492 KAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQA 566 (667)
T ss_pred HHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Confidence 99877442 122221 0000000 000112223322 2345668999999999877765444
No 15
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=96.66 E-value=0.021 Score=64.05 Aligned_cols=182 Identities=21% Similarity=0.247 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhc-CCcceecCCchhhhhhhhcCCCcccc----chHHHHHHHHHHHH
Q 002872 185 YLSASALMWASTHNESLKEKMSAVVSALSACQKEI-GSGYLSAFPTEQFDRLEALIPVWAPY----YTIHKILAGLLDQY 259 (872)
Q Consensus 185 yLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~-~dGYL~a~~~~~f~~~~~l~~~W~py----y~~HkI~aGLld~y 259 (872)
.|-|+|. +..++|++.++.+.++++.|.+.-... ..||...++. .|.+. -.+|.+++ +++.|
T Consensus 86 ~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~-----------~~~~~r~~n~~mhl~eA-~l~l~ 152 (346)
T PF07221_consen 86 ALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDP-----------DWSPPRGQNPHMHLLEA-FLALY 152 (346)
T ss_dssp HHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETT-----------TSSCBEEHHHHHHHHHH-HHHHH
T ss_pred HHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCC-----------ccccCCCCChhHHHHHH-HHHHH
Confidence 4667777 678999999999999999987775311 2355444332 12221 22576765 46899
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhhhhhhccc---ccccccccc------------ccccchH-H---HHHHHH--HHcCC
Q 002872 260 TYADNAEALRMTTWMVEYFYNRVQNVIKKYS---IERHWQTLN------------EEAGGMN-D---VLYKLF--CITQD 318 (872)
Q Consensus 260 ~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~---~~~~~~~l~------------~E~GGmn-e---aL~~LY--~~TGd 318 (872)
+++|+++.++.+.++++.+.+++-..-.+.. ....|.++. .|.| .+ | -|.++. ...++
T Consensus 153 ~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pG-H~~E~~wll~~~~~~~~~~~ 231 (346)
T PF07221_consen 153 EATGDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPG-HDFEWAWLLLEAARLTGRGD 231 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HH-HHHHHHHHHHHHHHHCHCT-
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCc-hhHHHHHHHHHHHHhccccc
Confidence 9999999999999999999866532111110 012233221 2223 33 3 344444 34588
Q ss_pred HHHHHHhhhcccccccchhhccCCCCC-CC----cccCCcch-----------hhHHHHHHHHhCChHHHHHHHHHHHHH
Q 002872 319 PKHLMLAHLFDKPCFLGLLALQADDIS-GF----HSNTHIPI-----------VIGSQMRYEVTGDQLHKTISMFFMDIV 382 (872)
Q Consensus 319 ~ryL~lA~~F~~~~~~~~l~~~~D~l~-g~----HanthiP~-----------~~G~a~~Y~~TGD~~y~~aa~~fwd~V 382 (872)
+++++.|..+.... +..+-|.-. |+ ..+.+.+. +.+.+..|+.|||+.|++.++..|+.+
T Consensus 232 ~~~~~~a~~l~~~~----~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~ 307 (346)
T PF07221_consen 232 PDWLERARRLFDFA----LEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYI 307 (346)
T ss_dssp HTHHHHHHHHHHHH----HHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 99998886653211 011111100 00 11112221 357788999999999999999999988
Q ss_pred hc
Q 002872 383 NS 384 (872)
Q Consensus 383 ~~ 384 (872)
.+
T Consensus 308 ~~ 309 (346)
T PF07221_consen 308 FR 309 (346)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 16
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=96.59 E-value=0.038 Score=61.99 Aligned_cols=252 Identities=16% Similarity=0.145 Sum_probs=133.3
Q ss_pred hhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhc-CCcceecCCchhhhhhhhcCCCccccchHHHHHHHHHHHH
Q 002872 181 FVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEI-GSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQY 259 (872)
Q Consensus 181 ~~GhyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~-~dGYL~a~~~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y 259 (872)
+.+.-|=..|.+|. +++++..+.++.-++.|.+.-... ..||+......- . ... =-.-|..--++.|+- .+
T Consensus 22 ~q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~---~--~~~-~~~~Y~~af~l~ala-~~ 93 (346)
T PF07221_consen 22 VQARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG---P--LDP-QKDLYDQAFALLALA-EA 93 (346)
T ss_dssp HHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE---E--EE---EEHHHHHHHHHHHH-HH
T ss_pred eeHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC---C--Ccc-ccchHHHHHHHHHHH-HH
Confidence 35677777788888 889999999999999998876422 346654442210 0 000 012345555666764 48
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhhhhh-hccc--cccccccc--cccccchHHHHHHHHHHcCCHHHHHHhhhccc---c
Q 002872 260 TYADNAEALRMTTWMVEYFYNRVQNVI-KKYS--IERHWQTL--NEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK---P 331 (872)
Q Consensus 260 ~~tG~~~aL~va~~~ad~~~~~~~~~~-~~~~--~~~~~~~l--~~E~GGmneaL~~LY~~TGd~ryL~lA~~F~~---~ 331 (872)
.+||+++++++|.+..+.+.+++.... ..+. ..+-+... ...+-=+.+++..||+.|||++|++.|+.+.+ .
T Consensus 94 ~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~ 173 (346)
T PF07221_consen 94 RATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLD 173 (346)
T ss_dssp HCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 899999999999999999988874321 1111 01111111 00000023688899999999999999876532 1
Q ss_pred cccchhh------ccCC--CCC-CCcccCCcc--hhhHHHH-------HHH---HhCChHHHHHHHHHHHHHhccCeeee
Q 002872 332 CFLGLLA------LQAD--DIS-GFHSNTHIP--IVIGSQM-------RYE---VTGDQLHKTISMFFMDIVNSSHTYAT 390 (872)
Q Consensus 332 ~~~~~l~------~~~D--~l~-g~HanthiP--~~~G~a~-------~Y~---~TGD~~y~~aa~~fwd~V~~~h~Y~T 390 (872)
.|+++.. ...| .+. +.+..+-.+ +--||.. .+. ..+++.+++.++...+....+-.-..
T Consensus 174 ~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~~G~d~~ 253 (346)
T PF07221_consen 174 RFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFALEHGWDRE 253 (346)
T ss_dssp TCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHHHHHHBSTT
T ss_pred HHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHheEecC
Confidence 2222110 0111 000 000000011 2246532 233 55788888888777776654222222
Q ss_pred cC-CCCCCCCCCCcccccCCCCCcccccchHHHHHHHHHHhcccCCchhHHHHHHHH
Q 002872 391 GG-TSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSL 446 (872)
Q Consensus 391 GG-~g~~E~f~~p~~L~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERaL 446 (872)
|| +-.. .+. .+......--.=...+.|+-.-.+++.|||.+|.+.++++.
T Consensus 254 ~gG~~~~---~d~---~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~ 304 (346)
T PF07221_consen 254 GGGLFYS---VDR---DGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVW 304 (346)
T ss_dssp TSSB-SE---EET---TS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred CCeEEEE---EeC---CCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 32 2110 000 00001111111123456666677888999999999988876
No 17
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.47 E-value=0.15 Score=63.89 Aligned_cols=220 Identities=13% Similarity=0.040 Sum_probs=129.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhc-CCcceecCCchhhhhhhhcCCCccccchHHHHHHHHHHHHHHcCC
Q 002872 186 LSASALMWASTHNESLKEKMSAVVSALSACQKEI-GSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADN 264 (872)
Q Consensus 186 LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~-~dGYL~a~~~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y~~tG~ 264 (872)
+-++..++..++|+.+++.+.++++.+.+..... ..+++++. ++ +...|+..|+.+++
T Consensus 547 ~~~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G~-------------------aG--ii~~Ll~l~~~~~~ 605 (825)
T cd04792 547 LYALTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKLDFISGA-------------------AG--LILVLLSLYELFLS 605 (825)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccCCCEeeec-------------------HH--HHHHHHHHHhccCC
Confidence 3345556667899999999999999886654310 11222221 11 34456778999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhcccccccccccccccc--chHHHHHHHHHHcCCHHHHHHhhhccc---ccc-----c
Q 002872 265 AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDK---PCF-----L 334 (872)
Q Consensus 265 ~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~lA~~F~~---~~~-----~ 334 (872)
++.++++.+.++++.+...+...............--+| |+..+|.+||+.|+|++|++.|+...+ ..+ .
T Consensus 606 ~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~ 685 (825)
T cd04792 606 ERFLDLALKCGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWN 685 (825)
T ss_pred hHHHHHHHHHHHHHHHhhhhccCCcccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcC
Confidence 999999999999986543211000000000000111234 788999999999999999999876532 111 1
Q ss_pred chhhccCCCCCCCcccCCcch--hhHHHHHHHH--hCChHHHHHHHHHHHHHhccCeeeecCCCCCCCCCCCcccccCCC
Q 002872 335 GLLALQADDISGFHSNTHIPI--VIGSQMRYEV--TGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLD 410 (872)
Q Consensus 335 ~~l~~~~D~l~g~HanthiP~--~~G~a~~Y~~--TGD~~y~~aa~~fwd~V~~~h~Y~TGG~g~~E~f~~p~~L~~~l~ 410 (872)
|+. ..+.. ..-+-.|... .......++. .+|+.+.+.+...-+.+..+ | +.
T Consensus 686 w~~--~~~~~-~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~-----~-------~~---------- 740 (825)
T cd04792 686 WPR--KDGNS-FSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKE-----G-------FG---------- 740 (825)
T ss_pred CCC--cCcCC-CCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHh-----c-------CC----------
Confidence 110 00000 0011223332 2334456777 67888877666665554321 1 00
Q ss_pred CCcccccchHHHHHHHHHHhcccCCchhHHHHHHHHhhhhcc
Q 002872 411 SNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLG 452 (872)
Q Consensus 411 ~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~iLa 452 (872)
...+=+|...+.+.+...+.+.++|.+|.+.+++.+ +.++.
T Consensus 741 ~~~slCHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~-~~l~~ 781 (825)
T cd04792 741 NNHSLCHGDLGNLEILLYAAKAFGDEKLQELANSLA-IKVLS 781 (825)
T ss_pred CCCeecCCCcchHHHHHHHHHhcCCHHHHHHHHHHH-HHHHH
Confidence 113345777888888888999999999988888765 33443
No 18
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.47 E-value=0.098 Score=62.22 Aligned_cols=125 Identities=19% Similarity=0.204 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccccchHHHHHHHHHHHHHHcC
Q 002872 184 HYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYAD 263 (872)
Q Consensus 184 hyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y~~tG 263 (872)
--+.++.-+|-.--.+++++.++.+.+.|.-.|. .|+.++.|-. ++ .++.|||.+|..+|
T Consensus 113 TlVDSLDTL~IMgl~~Ef~~a~~~V~~~l~f~~~--~~~~vsvFEt-----------------tI-R~LGGLLSAy~Ls~ 172 (522)
T PTZ00470 113 TIIDSLDTLKIMGLKKEYKEGRDWVANNLKQSKD--TGLGVSVFET-----------------TI-RVLGGLLSAYDLTG 172 (522)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC--CCCeeeeeee-----------------eh-hhHhHHHHHHHHcC
Confidence 3455555555444445554444433333332233 4666655421 22 25789999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhccc-----------ccccc---ccccccccchHHHHHHHHHHcCCHHHHHHhhhcc
Q 002872 264 NAEALRMTTWMVEYFYNRVQNVIKKYS-----------IERHW---QTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFD 329 (872)
Q Consensus 264 ~~~aL~va~~~ad~~~~~~~~~~~~~~-----------~~~~~---~~l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F~ 329 (872)
++..|+.|..++|-+..-|.. ..+.+ ....| ...-.|.|.+..-+..|.++|||++|.+.|++..
T Consensus 173 d~~lL~kA~dLgd~Ll~AFdT-ptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~ 251 (522)
T PTZ00470 173 DEMYLEKAREIADRLLPAFNE-DTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVM 251 (522)
T ss_pred CHHHHHHHHHHHHHHHHhhcC-CCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 999999999999999876631 11111 01111 1122477778788899999999999999998774
No 19
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.36 E-value=0.4 Score=52.59 Aligned_cols=227 Identities=15% Similarity=0.058 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhh----cCCcceecCCchhhhhhhhcCCCccccchHHHHHHHHHHHHH
Q 002872 185 YLSASALMWASTHNESLKEKMSAVVSALSACQKE----IGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYT 260 (872)
Q Consensus 185 yLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~----~~dGYL~a~~~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y~ 260 (872)
.+-++...+..++|+++.+.+++++..+.+.-.. ...+++... ++ +...|+..|+
T Consensus 55 i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G~-------------------aG--~~~~ll~~~~ 113 (343)
T cd04434 55 IAYALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGL-------------------AG--LLLALLLLYK 113 (343)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCcceeech-------------------HH--HHHHHHHHHH
Confidence 3445556666789999999999999887764320 011222221 12 4455667888
Q ss_pred HcCChhHHHHHHHHHHHHHHHhhhhhhcccc---cccc-cccccccc--chHHHHHHHHHHcCCHHHHHHhhhccc---c
Q 002872 261 YADNAEALRMTTWMVEYFYNRVQNVIKKYSI---ERHW-QTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDK---P 331 (872)
Q Consensus 261 ~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~---~~~~-~~l~~E~G--GmneaL~~LY~~TGd~ryL~lA~~F~~---~ 331 (872)
.++++..++++.+.++++.+...+....... .... ....--+| |+-.+|..+|+.+.++.+.++++.... .
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (343)
T cd04434 114 TFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERR 193 (343)
T ss_pred hcCCcCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Confidence 8899999999999999997654321111000 0000 00111233 788999999999988888877765422 1
Q ss_pred cc-----cchhhccCCCCCCCcccCCcc--hhhHHHHHHHHhCChHHHHHHHHHHHHHhccCeeeecCCCCCCCCCCCcc
Q 002872 332 CF-----LGLLALQADDISGFHSNTHIP--IVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKR 404 (872)
Q Consensus 332 ~~-----~~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~Y~TGG~g~~E~f~~p~~ 404 (872)
.+ .++.....+.......-.|.. ++......|+.++|+.+.+.++...+.+.++... +
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~------- 258 (343)
T cd04434 194 LQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLL--------E------- 258 (343)
T ss_pred ccCCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhc--------c-------
Confidence 11 010000000000011112333 2333556799999999988877766665432110 0
Q ss_pred cccCCCCCcccccchHHHHHHHHHHhcccCCchhHHHHHHHHhhhhccc
Q 002872 405 LASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGI 453 (872)
Q Consensus 405 L~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~iLa~ 453 (872)
....+=.|...+.+....+|.+.+++.+|.+..++.. +.++..
T Consensus 259 -----~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~-~~~~~~ 301 (343)
T cd04434 259 -----LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALA-LLLISH 301 (343)
T ss_pred -----CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHH
Confidence 1223445777888899999999999999998776654 555543
No 20
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=0.021 Score=65.97 Aligned_cols=124 Identities=15% Similarity=0.090 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccccchHHH-HHHHHHHHHH
Q 002872 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHK-ILAGLLDQYT 260 (872)
Q Consensus 182 ~GhyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~pyy~~Hk-I~aGLld~y~ 260 (872)
.||-++|+--.+..|+...+.+-+.++.|.|+..-. |. + +=.+.|++|- |+.+|++-|+
T Consensus 133 aghLieg~va~~qaTGkr~lldV~~rlADhi~tvfg----------p~------~----~q~~g~~gH~eielAl~~Ly~ 192 (589)
T COG3533 133 AGHLIEGGVAAHQATGKRRLLDVVCRLADHIATVFG----------PE------E----DQVPGYCGHPEIELALAELYR 192 (589)
T ss_pred hHHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcC----------cc------c----cccccccCCCchhHHHHHHHH
Confidence 789999999999999999999999999999875543 10 0 0124566775 7889999999
Q ss_pred HcCChhHHHHHHHHHHHHHHHhhhhhhcccccccccccccccc-chHHHHHHHHHHcCCHHHHHHhhhccc
Q 002872 261 YADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAG-GMNDVLYKLFCITQDPKHLMLAHLFDK 330 (872)
Q Consensus 261 ~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~G-GmneaL~~LY~~TGd~ryL~lA~~F~~ 330 (872)
.||+++.|+++.+|.++-.. .+. .+-..++ ..+|.-+- -....+++||++|||+.+...+.+|.+
T Consensus 193 ~Tg~~rYL~LA~~Fi~~rg~--~P~-~~rg~e~--~~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~lW~ 258 (589)
T COG3533 193 LTGDQRYLDLARRFIHQRGV--EPL-AQRGDEL--EGGHAVRQIYLYIGAADLAEETGDDSLRQAAEFLWQ 258 (589)
T ss_pred HhcChHHHHHHHHHHHHhcc--Chh-hcCchhh--hhhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999887532 111 1111111 01111100 011478899999999999999999854
No 21
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=95.94 E-value=0.071 Score=55.41 Aligned_cols=142 Identities=18% Similarity=0.187 Sum_probs=89.8
Q ss_pred chhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCc--hhhhhhhhcCCCccccchHHHH-HHHHH
Q 002872 180 HFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPT--EQFDRLEALIPVWAPYYTIHKI-LAGLL 256 (872)
Q Consensus 180 h~~GhyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~--~~f~~~~~l~~~W~pyy~~HkI-~aGLl 256 (872)
-.-|+=||.++.+|..|+|++..+.+++.++-+..--+ ..|-+..+.. .+++++....... -.++|.. +.||-
T Consensus 30 maQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~--~GG~~~~~~~~~~wyeEYp~~p~s~--VLNGfiysL~GLy 105 (189)
T PF06662_consen 30 MAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKVPVE--EGGVLATFKNKYPWYEEYPTTPPSY--VLNGFIYSLIGLY 105 (189)
T ss_pred HHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChHh--hCCeeEEecCCcEeEeecCCCCCCE--EeehHHHHHHHHH
Confidence 34588999999999999999999999999988765555 5565554432 1222222112222 2356654 78999
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhhhhhhcccccccc-ccc-c------------ccccchHHHHHHHHHHcCCHHHH
Q 002872 257 DQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHW-QTL-N------------EEAGGMNDVLYKLFCITQDPKHL 322 (872)
Q Consensus 257 d~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~-~~l-~------------~E~GGmneaL~~LY~~TGd~ryL 322 (872)
|++..+++++|.++-.+=.+=+.+.+ +.++...+- ..+ | .-+.-...-|.+||.+|||+.+.
T Consensus 106 d~~~~~~~~~A~~lf~~Gl~sLk~~L----p~yD~G~wS~Ydl~h~~~~~~~~~a~~~YH~lHi~qL~~L~~it~d~~f~ 181 (189)
T PF06662_consen 106 DYYRLTGDEEAKELFDKGLKSLKKML----PLYDTGSWSRYDLRHFTLGNAPNIARWDYHRLHIQQLKWLYSITGDPIFK 181 (189)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHH----HhhhcCCCchhhccccccccCcCcCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999998877655544443332 222211110 001 0 01111234688899999999999
Q ss_pred HHhhhcc
Q 002872 323 MLAHLFD 329 (872)
Q Consensus 323 ~lA~~F~ 329 (872)
+.|+++.
T Consensus 182 ~~a~rW~ 188 (189)
T PF06662_consen 182 EYAERWK 188 (189)
T ss_pred HHHHHhc
Confidence 9999874
No 22
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.40 E-value=0.061 Score=63.02 Aligned_cols=193 Identities=17% Similarity=0.114 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHhhhhhhccc-----c-----ccccc--cccccccchHHHHHHHHHHc
Q 002872 251 ILAGLLDQYTYA--DNAEALRMTTWMVEYFYNRVQNVIKKYS-----I-----ERHWQ--TLNEEAGGMNDVLYKLFCIT 316 (872)
Q Consensus 251 I~aGLld~y~~t--G~~~aL~va~~~ad~~~~~~~~~~~~~~-----~-----~~~~~--~l~~E~GGmneaL~~LY~~T 316 (872)
++.|||.+|..+ +++..|+.|..+||.+..-|.. ..+.+ . .++.. ..-.|.|.+..-+.+|.++|
T Consensus 82 ~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t-~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lT 160 (452)
T PF01532_consen 82 VLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDT-PTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLT 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSS-SSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccC-CCccccceeeecccCCCCCCCCcccccccccceechhHHHHHh
Confidence 678999999999 9999999999999998766631 11111 1 01111 11246777788899999999
Q ss_pred CCHHHHHHhhhcccccccch--hhccCCCCCCCcc--cCCcch----hhH---------HHHHHHHhC--ChHHHHHHHH
Q 002872 317 QDPKHLMLAHLFDKPCFLGL--LALQADDISGFHS--NTHIPI----VIG---------SQMRYEVTG--DQLHKTISMF 377 (872)
Q Consensus 317 Gd~ryL~lA~~F~~~~~~~~--l~~~~D~l~g~Ha--nthiP~----~~G---------~a~~Y~~TG--D~~y~~aa~~ 377 (872)
||++|.+.|++..+. ++. .....+.|-+.+- .+-.++ -+| ..+.|.++| |+.|++.=..
T Consensus 161 gd~kY~~~a~~~~~~--l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~~~~~~ 238 (452)
T PF01532_consen 161 GDPKYFDAADRIYDA--LWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYRDMYDE 238 (452)
T ss_dssp S-THHHHHHHHHHHH--HHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH--HHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHHHHHHH
Confidence 999999999886431 010 0000111111111 111111 122 567788999 9999888777
Q ss_pred HHHHHhccCeeeecCCCCCC--CCCCCcc--ccc-CCCCCcccccchHHHHHHHHHHhcccCCchhHHHHHHHHhhhh
Q 002872 378 FMDIVNSSHTYATGGTSVGE--FWSDPKR--LAS-NLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGV 450 (872)
Q Consensus 378 fwd~V~~~h~Y~TGG~g~~E--~f~~p~~--L~~-~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~i 450 (872)
..+.|.+ |+......-..+ .|-.... ... ..+....=+|-.-+|+.+..+++ ++.++.+..++......
T Consensus 239 a~~~i~~-~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~---~~~~~~~~A~~l~~~C~ 312 (452)
T PF01532_consen 239 AVDAIKK-HLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLF---NDEGDLELAEELTETCY 312 (452)
T ss_dssp HHHHHHH-HTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTT---TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhccc---CchhHHHHHHHHHHHHH
Confidence 7777764 443332221111 1111100 000 01344667899999999999999 44566666665554433
No 23
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=95.20 E-value=0.54 Score=51.58 Aligned_cols=188 Identities=14% Similarity=-0.020 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccccchHHHHHHHHHHHHHHcCC
Q 002872 185 YLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADN 264 (872)
Q Consensus 185 yLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y~~tG~ 264 (872)
.+-++...+..++|+...+.+..+++.|.+.+....+++--..... . ....-.|..=..+ |...|+..+..+.+
T Consensus 104 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~---~~~~~g~~HG~~G--i~~~l~~~~~~~~~ 177 (343)
T cd04434 104 LLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFP-E---GRVNLGLAHGLAG--ILLALLLLYKKTVD 177 (343)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCceeeecc-C---CccccchhhhhHH--HHHHHHHHHHhcCC
Confidence 4556666777788999999999999999998874444332110000 0 0011122222222 55667778888888
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhcc----cccccccccccccc--chHHHHHHHHHHcCCHHHHHHhhhcccccccchhh
Q 002872 265 AEALRMTTWMVEYFYNRVQNVIKKY----SIERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLA 338 (872)
Q Consensus 265 ~~aL~va~~~ad~~~~~~~~~~~~~----~~~~~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~lA~~F~~~~~~~~l~ 338 (872)
++..+++.....+..+.+...-..+ ..........--+| |+-.++.++|+.|+|+++++.++.......-...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 256 (343)
T cd04434 178 KSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGL- 256 (343)
T ss_pred hhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhh-
Confidence 8888888777777654332100000 00000000111244 7889999999999999999998765332111100
Q ss_pred ccCCCCCCCcccCCcc--hhhHHHHHHHHhCChHHHHHHHHHHHHHh
Q 002872 339 LQADDISGFHSNTHIP--IVIGSQMRYEVTGDQLHKTISMFFMDIVN 383 (872)
Q Consensus 339 ~~~D~l~g~HanthiP--~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~ 383 (872)
. + ...+..-|.. +.......|+.|+|+.+++.++.+.+.+.
T Consensus 257 -~-~--~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~~~~~ 299 (343)
T cd04434 257 -L-E--LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALALLLI 299 (343)
T ss_pred -c-c--CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 0 0 1112233444 23445677999999999998887766654
No 24
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=95.05 E-value=0.051 Score=60.45 Aligned_cols=115 Identities=17% Similarity=0.046 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhccc
Q 002872 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (872)
Q Consensus 251 I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F~~ 330 (872)
.+-|+..+|++||+++.|+.+...+|....+=+ ++...+.... +...|.-||+.|||++||++|....+
T Consensus 41 ~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g--~~~~~id~i~---------~g~~L~~L~e~T~~~~Yl~~a~~~a~ 109 (357)
T COG4225 41 FLYGVARAYEATGDAEYLDYLKTWFDEQIDEGG--LPPRNIDHIA---------AGLTLLPLYEQTGDPRYLEAAIKLAS 109 (357)
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCC--CCccchhhhc---------cCceeeehhhhhCCHHHHHHHHHHHH
Confidence 345888999999999999999888887654211 1111111110 11478899999999999998877632
Q ss_pred ccccchhhccCCCCCCCcccCCcch----------hhH---HHHHHHHhCChHHH-HHHHHHHHHHh
Q 002872 331 PCFLGLLALQADDISGFHSNTHIPI----------VIG---SQMRYEVTGDQLHK-TISMFFMDIVN 383 (872)
Q Consensus 331 ~~~~~~l~~~~D~l~g~HanthiP~----------~~G---~a~~Y~~TGD~~y~-~aa~~fwd~V~ 383 (872)
.-...+ +-.-.+ ..|+.+ .+| .++.-.++|+++|. ++.+.|+..+.
T Consensus 110 ~l~~~~----Rt~eG~---f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~ 169 (357)
T COG4225 110 WLVHEP----RTKEGG---FQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEK 169 (357)
T ss_pred HHhhCc----ccCCCc---cccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 111011 000011 123322 244 36667999999997 57888988764
No 25
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=94.80 E-value=0.73 Score=51.83 Aligned_cols=193 Identities=12% Similarity=0.027 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhc-CCCccccchHHHHHHHHHHHH
Q 002872 182 VGHYLSASALMWASTHN-ESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEAL-IPVWAPYYTIHKILAGLLDQY 259 (872)
Q Consensus 182 ~GhyLsA~A~~~a~t~D-~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l-~~~W~pyy~~HkI~aGLld~y 259 (872)
..-+|.++...+..+++ +.+.+.++.+++.+.+.-+...+......+.. + .|... .-.|+.=.++ |...|+..+
T Consensus 103 ~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~-~-~~~~~~~~G~aHG~aG--I~~~L~~~~ 178 (343)
T cd04794 103 RAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLM-Y-EWHGKEYLGAAHGLAG--ILYILLQTP 178 (343)
T ss_pred HHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCcc-c-cccCceecchhhhHHH--HHHHHHhhh
Confidence 44578888888888873 45777788888776654221122221111110 0 01100 0112221222 555677888
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhhhhhhcccc--cc--cccccccccc--chHHHHHHHHHHcCCHHHHHHhhhcccccc
Q 002872 260 TYADNAEALRMTTWMVEYFYNRVQNVIKKYSI--ER--HWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCF 333 (872)
Q Consensus 260 ~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~--~~--~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~lA~~F~~~~~ 333 (872)
..+++++.++.+.+..+|+.+...+. ..++. .. .....+-=+| |+-.++..+|+.++|+++++.|+.-.+..
T Consensus 179 ~~~~~~~~~~~i~~~i~~~~~~~~~~-g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~- 256 (343)
T cd04794 179 LFLLKPSLAPLIKRSLDYLLSLQFPS-GNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELI- 256 (343)
T ss_pred hhcCCccHHHHHHHHHHHHHHhhccC-CCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHH-
Confidence 88999999999999999987642110 00100 00 0000011134 78899999999999999999887754321
Q ss_pred cchhhccCCCCCCCcccCCcc--hhhHHHHHHHHhCChHHHHHHHHHHHHHhcc
Q 002872 334 LGLLALQADDISGFHSNTHIP--IVIGSQMRYEVTGDQLHKTISMFFMDIVNSS 385 (872)
Q Consensus 334 ~~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~ 385 (872)
+. ...+..-+..-|.- +..+....|+.|+|+.|++.+..+.+.+.++
T Consensus 257 -~~----~g~~~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~~~~~ 305 (343)
T cd04794 257 -WK----RGLLKKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEFLINY 305 (343)
T ss_pred -HH----hCCccCCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence 10 00000001122222 3455678899999999999999999988754
No 26
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=94.77 E-value=0.11 Score=58.02 Aligned_cols=134 Identities=17% Similarity=0.075 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHhhhcccccccchhhccCCCCCCCcccCCcchhhHHHHHHHHhCChHHHHHHHHHHH-HHh
Q 002872 305 MNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMD-IVN 383 (872)
Q Consensus 305 mneaL~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~~~D~l~g~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd-~V~ 383 (872)
+-.+|..+|+.|||++|++.|+.+.+... +.... ..+.++| .+.......|+.|||++|++++....+ ++.
T Consensus 30 ~~~gl~~~~~~tgd~~~~~~a~~~~~~~~-~~~~~------~~~~d~~-~~g~~~~~~y~~t~d~~y~~~~~~~a~~~l~ 101 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYLDYAERWADRFI-EEDGS------DYNLDDH-DIGFLLLDLYERTGDEKYKDAAIQAADWLLA 101 (336)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHT------TTSCCGT-THHHHHHHHHHHH-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-hccCC------ccCCchh-hhHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55678899999999999999987644221 11110 1122233 333334678999999999999999999 554
Q ss_pred ccCeeeecCCCCCCCCCCCcccccCCCCCcccc--cchHH-HHHHHHHHhcccCCchhHHHHHHHHhhhhcccCCCCCCC
Q 002872 384 SSHTYATGGTSVGEFWSDPKRLASNLDSNTEES--CTTYN-MLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPG 460 (872)
Q Consensus 384 ~~h~Y~TGG~g~~E~f~~p~~L~~~l~~~~~ET--Cas~n-mlkl~~~Lf~~tgd~~YaD~~ERaLyN~iLa~q~~~d~g 460 (872)
+..--..||+...+. .... |-+.- .+-+.-++...|||.+|.|...+-+-...--..++ +.|
T Consensus 102 ~~~~~~~G~~~~~~~--------------~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~-~tG 166 (336)
T PF07470_consen 102 RRPRTSDGGFWHNRP--------------YPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDP-ETG 166 (336)
T ss_dssp TSCBECTGCBECTTT--------------STTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-T-TTS
T ss_pred hCCCCCCCccccCCC--------------CCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCC-CCC
Confidence 333224565543111 1111 22221 22344555788999999998876654333223333 444
Q ss_pred c
Q 002872 461 V 461 (872)
Q Consensus 461 ~ 461 (872)
.
T Consensus 167 l 167 (336)
T PF07470_consen 167 L 167 (336)
T ss_dssp S
T ss_pred c
Confidence 3
No 27
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=94.72 E-value=1.4 Score=55.39 Aligned_cols=215 Identities=18% Similarity=0.194 Sum_probs=119.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHhhc-----CCcceecCCchhhhhhhhcCCCccccchHHHHHHHHHHHHHHcCCh
Q 002872 191 LMWASTHNESLKEKMSAVVSALSACQKEI-----GSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNA 265 (872)
Q Consensus 191 ~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~-----~dGYL~a~~~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y~~tG~~ 265 (872)
+.+..++|+.+++.+.++++.+.+.-+.. +.|.+++. + =|...|+..|..++++
T Consensus 502 ~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G~-------------------a--Gi~~~L~~l~~~~~~~ 560 (825)
T cd04792 502 YLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGL-------------------G--GILYALTHLGKLLKDD 560 (825)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEech-------------------h--HHHHHHHHHHHHcCCH
Confidence 34456789999998888888776553311 11222211 0 1333455678889999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhcccccccchhhccCCCCC
Q 002872 266 EALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDIS 345 (872)
Q Consensus 266 ~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~~~D~l~ 345 (872)
+.++.+.+.++.+.+.... . .....++. ..|+-.+|..||+.|++++++++|....+.- ... ....+...
T Consensus 561 ~~~~~a~~~~~~l~~~~~~------~-~~~D~~~G-~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l-~~~-~~~~~~~~ 630 (825)
T cd04792 561 RLLNLAKEILDLIDELIEK------D-EKLDFISG-AAGLILVLLSLYELFLSERFLDLALKCGDHL-LEN-ASNEDGGI 630 (825)
T ss_pred HHHHHHHHHHHHHHHhhcc------c-cCCCEeee-cHHHHHHHHHHHhccCChHHHHHHHHHHHHH-HHh-hhhccCCc
Confidence 9999998888877543211 0 00111222 2267789999999999999999988764321 110 00111000
Q ss_pred CCc------ccCCcc--hhhHHHHHHHHhCChHHHHHHHHHHHHHhccCeeeecCCCCCCCCCCCcccccCCCCCccccc
Q 002872 346 GFH------SNTHIP--IVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESC 417 (872)
Q Consensus 346 g~H------anthiP--~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~Y~TGG~g~~E~f~~p~~L~~~l~~~~~ETC 417 (872)
..+ .-.|.. ++.-.+..|+.|+|+.|++++...++.... + +..++ ..|.... . .....--|
T Consensus 631 ~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~-~-~~~~~----~~w~~~~--~---~~~~~~WC 699 (825)
T cd04792 631 GPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERR-L-FSEEG----WNWPRKD--G---NSFSAAWC 699 (825)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-h-cCHhh----cCCCCcC--c---CCCCCccc
Confidence 000 112222 122245678999999999999888875432 2 21111 1222110 0 11112234
Q ss_pred -chHHHHHHHHHHhcc--cCCchhHHHHHHHHh
Q 002872 418 -TTYNMLKVSRHLFRW--TKEIAYADYYERSLT 447 (872)
Q Consensus 418 -as~nmlkl~~~Lf~~--tgd~~YaD~~ERaLy 447 (872)
.+.+.+...-.+.+. ..|..+.+.+++++-
T Consensus 700 hG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~ 732 (825)
T cd04792 700 HGAPGILLARLELLKFNDLDDEELKEEIEIALK 732 (825)
T ss_pred CCcHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 445555555667777 578888888888763
No 28
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=94.39 E-value=0.36 Score=59.57 Aligned_cols=119 Identities=14% Similarity=0.196 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhc-CCcceecCCchhhhhhhhcCCCccccchHHHHHHHHHHHHHH
Q 002872 183 GHYLSASALMWASTHNESLKEKMSAVVSALSACQKEI-GSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTY 261 (872)
Q Consensus 183 GhyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~-~dGYL~a~~~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y~~ 261 (872)
+-|+=|+...+..++|..|++.+...|..|..+-++. ..+|+++-- + +..-|+..|+.
T Consensus 699 ~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~i~Gl~-------------------g--~i~~L~~iYk~ 757 (963)
T COG4403 699 SGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDFINGLA-------------------G--VICVLVSIYKL 757 (963)
T ss_pred chhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcchhhccH-------------------H--HHHHHHHHHhh
Confidence 3456677778889999999999999999988876533 234433321 1 22336789999
Q ss_pred cCChhHHHHHHHHHHHHHHHhhhhhhcccccccccc-cccccc--chHHHHHHHHHHcCCHHHHHHhhhc
Q 002872 262 ADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQT-LNEEAG--GMNDVLYKLFCITQDPKHLMLAHLF 328 (872)
Q Consensus 262 tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~-l~~E~G--GmneaL~~LY~~TGd~ryL~lA~~F 328 (872)
+..++.|++|...++++++..-.. ++ +..+ +.-.+| |+..+|.+||+.|||++++..++..
T Consensus 758 ~~epk~l~~ais~~~~l~~~~v~~-----d~-s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~ 821 (963)
T COG4403 758 TDEPKFLELAISLGRILMEKIVGN-----DS-SETVLLGFSHGASGIILTLLKLYEATGEESLLKKIKEL 821 (963)
T ss_pred ccchHHHHHHHHHHHHHHHHhhcc-----cc-ccceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999999999999997543221 11 1122 223444 7889999999999999999998754
No 29
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=93.97 E-value=0.22 Score=51.87 Aligned_cols=131 Identities=20% Similarity=0.151 Sum_probs=76.1
Q ss_pred HHHHHHHHHcCCHHHHHHhhhcccccccchhhcc------CC---------CCCCCc-ccCCcchhhHHHHHHHHhCChH
Q 002872 307 DVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQ------AD---------DISGFH-SNTHIPIVIGSQMRYEVTGDQL 370 (872)
Q Consensus 307 eaL~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~~------~D---------~l~g~H-anthiP~~~G~a~~Y~~TGD~~ 370 (872)
.+|+|.|++|||++||+.|++..+. |.-+..++ .+ ..+..| -|.||-.++|.-..+..|+++.
T Consensus 37 s~l~RAy~~t~d~~Yl~aA~~al~~-f~~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~~~~~~ 115 (189)
T PF06662_consen 37 SVLARAYQLTGDEKYLDAAKKALNS-FKVPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRLTGDEE 115 (189)
T ss_pred HHHHHHHHhHCCHHHHHHHHHHHHH-hcChHhhCCeeEEecCCcEeEeecCCCCCCEEeehHHHHHHHHHHHHHhcCCHH
Confidence 6899999999999999999985432 11111111 01 001111 2444445577777788899987
Q ss_pred HHHHHHHHHHHHhc-cCeeeecCCCCCC--CCCCCcccccCCCCCcccccchHHHHHHHHHHhcccCCchhHHHHHH
Q 002872 371 HKTISMFFMDIVNS-SHTYATGGTSVGE--FWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYER 444 (872)
Q Consensus 371 y~~aa~~fwd~V~~-~h~Y~TGG~g~~E--~f~~p~~L~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ER 444 (872)
.++.-+.-.+.+.. -..|-+|+.+.-. |+... ..++.-+..|.. . .+.....|..+|+|+.|.+++||
T Consensus 116 A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~-~~~~~a~~~YH~--l---Hi~qL~~L~~it~d~~f~~~a~r 186 (189)
T PF06662_consen 116 AKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTLG-NAPNIARWDYHR--L---HIQQLKWLYSITGDPIFKEYAER 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchhhccccccc-cCcCcCcchHHH--H---HHHHHHHHHHhcCCHHHHHHHHH
Confidence 77666665555431 1367778776432 22211 111100111221 1 34556779999999999999997
No 30
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=93.90 E-value=1 Score=51.50 Aligned_cols=195 Identities=16% Similarity=0.092 Sum_probs=111.2
Q ss_pred CCCcCcccchhhHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccccchH
Q 002872 172 EPSCELRGHFVGHYLSASALMWASTHNES---LKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTI 248 (872)
Q Consensus 172 ~~~~~l~Gh~~GhyLsA~A~~~a~t~D~~---L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~pyy~~ 248 (872)
+.+.++.+|.+- |=|+|. ++..++++ +++.+-.+++.+..-++.---||.-..|-. .-. .-.=.+
T Consensus 110 Dat~d~Y~haFa--llA~A~-~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~---~pl------~sNp~M 177 (388)
T COG2942 110 DATKDLYGHAFA--LLAAAH-AATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGS---APL------GSNPHM 177 (388)
T ss_pred cccHhHHHHHHH--HHHHHH-HHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCC---Ccc------CCCcch
Confidence 345677777663 335555 34455554 555555566655555552122343333211 000 112267
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhhh----hcccccccccccccccc-c------hH--HHHHHHHHH
Q 002872 249 HKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVI----KKYSIERHWQTLNEEAG-G------MN--DVLYKLFCI 315 (872)
Q Consensus 249 HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~----~~~~~~~~~~~l~~E~G-G------mn--eaL~~LY~~ 315 (872)
|.++| +|+.|+.+|.+..++.|.+.|+-+.++|-... ..+.+.+ |.+.+.+.| | ++ --|.++-+.
T Consensus 178 Hl~EA-~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~d-W~p~~~frg~~~ePGH~fEW~~Lll~~a~~ 255 (388)
T COG2942 178 HLLEA-MLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHD-WNPAHGFRGRGIEPGHQFEWAWLLLDIARR 255 (388)
T ss_pred HHHHH-HHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhcccc-CCcCCCcccCCCCCchHHHHHHHHHHHHHH
Confidence 87765 67999999999999999999999998874321 1122222 333344443 1 22 367778888
Q ss_pred cCCHHHHHHhhhcccccccchhhccCCCCC-CCc------ccCCc------chh--hHHH-HHHHHhC-ChHHHHHHHHH
Q 002872 316 TQDPKHLMLAHLFDKPCFLGLLALQADDIS-GFH------SNTHI------PIV--IGSQ-MRYEVTG-DQLHKTISMFF 378 (872)
Q Consensus 316 TGd~ryL~lA~~F~~~~~~~~l~~~~D~l~-g~H------anthi------P~~--~G~a-~~Y~~TG-D~~y~~aa~~f 378 (872)
-|+...+..|+++.+... +.+-|.-. +.+ .+.|- |+. +++| ..++.|| ++.|.+...++
T Consensus 256 ~~~~~l~~~A~~lf~~a~----~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~~~~~~~~y~~~~~R~ 331 (388)
T COG2942 256 RGRAWLIEAARRLFDIAV----ADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAETTGARERYWQWYARA 331 (388)
T ss_pred hchhHHHHHHHHHHHHHH----HhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 899999999988743221 11111100 000 11222 222 4444 4578889 89999999998
Q ss_pred HHHHhc
Q 002872 379 MDIVNS 384 (872)
Q Consensus 379 wd~V~~ 384 (872)
|+....
T Consensus 332 ~~~~~~ 337 (388)
T COG2942 332 WDYLWW 337 (388)
T ss_pred HHHHHH
Confidence 888754
No 31
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=93.78 E-value=1.9 Score=49.13 Aligned_cols=181 Identities=13% Similarity=-0.050 Sum_probs=98.6
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhc-CC------CccccchHHHHHHHHHHHHHHc-CChhHH
Q 002872 197 HNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEAL-IP------VWAPYYTIHKILAGLLDQYTYA-DNAEAL 268 (872)
Q Consensus 197 ~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l-~~------~W~pyy~~HkI~aGLld~y~~t-G~~~aL 268 (872)
.+.+....+..+++.|.+.+....++|+-.... +...+.. .. .|+.=.++ |+..|...|+.+ ++++.+
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~aHG~aG--i~~~L~~~~~~~~~~~~~~ 195 (382)
T cd04793 120 PDSELLREILDYLVYLTEPLNQDITLYIWSENQ--PSETESKEFPEGHINLGLAHGIAG--PLALLALAKERGIRVDGQL 195 (382)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCccCcCcC--CCccccccCCCccccccchhcchH--HHHHHHHHHHcCCCcCChH
Confidence 567777778888888777644223333322211 0101100 00 12111122 455555677777 788999
Q ss_pred HHHHHHHHHHHHHhhhhhh-cccc--------------cccccccccccc--chHHHHHHHHHHcCCHHHHHHhhhcccc
Q 002872 269 RMTTWMVEYFYNRVQNVIK-KYSI--------------ERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKP 331 (872)
Q Consensus 269 ~va~~~ad~~~~~~~~~~~-~~~~--------------~~~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~lA~~F~~~ 331 (872)
+++.+..+|+.+.+...-. .+.. ........--+| |+..++..+++.++|+++.+.|....+.
T Consensus 196 ~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~ 275 (382)
T cd04793 196 EAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKA 275 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999988887654321000 0000 000000001234 7889999999999999999998876432
Q ss_pred cccchhhccCCCCCCCcccCCcc--hhhHHHHHHHHhCChHHHHHHHHHHHHHhc
Q 002872 332 CFLGLLALQADDISGFHSNTHIP--IVIGSQMRYEVTGDQLHKTISMFFMDIVNS 384 (872)
Q Consensus 332 ~~~~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~ 384 (872)
....... ... ...+...|.. +.......|+.|+|+.++++++++.+.+..
T Consensus 276 ~~~~~~~--~~~-~~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~ 327 (382)
T cd04793 276 ALKDKKQ--LSK-LISPTLCHGLAGLLFIFYLLYKDTNTNEFKSALEYLLNQIIS 327 (382)
T ss_pred HHhChhh--hcc-CCCCCcCccHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 2111000 000 0112233443 233456779999999999999998887764
No 32
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=91.61 E-value=0.57 Score=52.43 Aligned_cols=138 Identities=17% Similarity=0.052 Sum_probs=77.3
Q ss_pred cccchHHHHHHHHHHcCCHHHHHHhhhcccccccchhhccCCCCCCCcccCCcc-hhhH--HHHHHHHhCChHHHHHHHH
Q 002872 301 EAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIP-IVIG--SQMRYEVTGDQLHKTISMF 377 (872)
Q Consensus 301 E~GGmneaL~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~~~D~l~g~HanthiP-~~~G--~a~~Y~~TGD~~y~~aa~~ 377 (872)
|.|=--..++++|+.|||++||+..+...+..+... .++. ..|. +..| ..-+|+.|||++|++++..
T Consensus 37 e~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~------g~~~----~~id~i~~g~~L~~L~e~T~~~~Yl~~a~~ 106 (357)
T COG4225 37 EQGVFLYGVARAYEATGDAEYLDYLKTWFDEQIDEG------GLPP----RNIDHIAAGLTLLPLYEQTGDPRYLEAAIK 106 (357)
T ss_pred cccchHHHHHHHHHHcCcHHHHHHHHHHHHhhhccC------CCCc----cchhhhccCceeeehhhhhCCHHHHHHHHH
Confidence 444333678999999999999998876533222211 0111 0111 1233 2457999999999999999
Q ss_pred HHHHHhccCeeeecCCCCCCCCCCCcccccCCCCCcccccchHHH-HHHHHHHhcccCCchhHHHHHHHHhhhhcccCCC
Q 002872 378 FMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNM-LKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRG 456 (872)
Q Consensus 378 fwd~V~~~h~Y~TGG~g~~E~f~~p~~L~~~l~~~~~ETCas~nm-lkl~~~Lf~~tgd~~YaD~~ERaLyN~iLa~q~~ 456 (872)
+=+.+++ +. -|. .+-+|+... .+ ..==|.+--| .-+.-++=+.+++++|+|.+=+..-=+.---++|
T Consensus 107 ~a~~l~~-~~-Rt~---eG~f~H~~~-~p------~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp 174 (357)
T COG4225 107 LASWLVH-EP-RTK---EGGFQHKVK-YP------HQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDP 174 (357)
T ss_pred HHHHHhh-Cc-ccC---CCccccccC-ch------hHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCC
Confidence 9998874 33 222 222333211 11 1111222111 1123345567899999998877665444444555
Q ss_pred CCCCc
Q 002872 457 TEPGV 461 (872)
Q Consensus 457 ~d~g~ 461 (872)
++|.
T Consensus 175 -~TGL 178 (357)
T COG4225 175 -ETGL 178 (357)
T ss_pred -CcCc
Confidence 4454
No 33
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=91.60 E-value=2.3 Score=47.82 Aligned_cols=131 Identities=18% Similarity=0.078 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccccchHHH-HHHHHHHHHHHc
Q 002872 184 HYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHK-ILAGLLDQYTYA 262 (872)
Q Consensus 184 hyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~pyy~~Hk-I~aGLld~y~~t 262 (872)
-.+.++...+..++|+++++.+...++.+.+.+. ++|.+...... + .+..-.-||.+-. |...++.+++.+
T Consensus 169 GI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~--~~g~w~~~~~~---~---~~~~~~~wChG~~Gi~~~l~~~~~~~ 240 (343)
T cd04794 169 GILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQF--PSGNFPSSLGN---R---KRDRLVQWCHGAPGIVYLLAKAYLVF 240 (343)
T ss_pred HHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhc--cCCCCCCccCC---C---CCCccccccCCCchHHHHHHHHHHHh
Confidence 3455566666678999999999999999998877 66753221110 0 0000011221111 455567889999
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhccc
Q 002872 263 DNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (872)
Q Consensus 263 G~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F~~ 330 (872)
++++.++.+.+.++.+.++ .... ... ..-|... |.-++|.++|+.|++++|++.|..+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~--g~~~----~~~-~lCHG~~-G~~~~lL~~~~~~~~~~~~~~a~~~~~ 300 (343)
T cd04794 241 KEEQYLEAAIKCGELIWKR--GLLK----KGP-GLCHGIA-GNAYAFLLLYRLTGDLKYLYRACKFAE 300 (343)
T ss_pred CCHHHHHHHHHHHHHHHHh--CCcc----CCC-ccccCcc-chHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 9999999998888876432 1100 000 1112222 567899999999999999999987743
No 34
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=91.46 E-value=2.8 Score=49.29 Aligned_cols=263 Identities=8% Similarity=0.044 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCcccc-chHHHH---HHHH
Q 002872 182 VGHYLSASALMWAST--HNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPY-YTIHKI---LAGL 255 (872)
Q Consensus 182 ~GhyLsA~A~~~a~t--~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~py-y~~HkI---~aGL 255 (872)
...+|.++--+|..+ +|+.|.+|+.++.|.|..+-+ .++|.- ++..-+. ......|.+. -+++.+ ..-+
T Consensus 79 ~iR~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~-t~~g~P--~~~~n~~--~~~~~~~~~~~~~la~~gs~~lEf 153 (452)
T PF01532_consen 79 TIRVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFD-TPTGIP--YPRVNLR--TGGKNRWPGGESSLAEAGSLQLEF 153 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGS-SSSS-----SEEETT--TCEEETTCCGEEEHHHHCSSHHHH
T ss_pred hhHhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhcc-CCCccc--cceeeec--ccCCCCCCCCcccccccccceech
Confidence 455666665566677 999999999999999988875 255642 2111000 0011112221 112222 1112
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHh-----hhhhhcc-cc-ccccccccccccchH----HHHHHHHHHcC--CHHHH
Q 002872 256 LDQYTYADNAEALRMTTWMVEYFYNRV-----QNVIKKY-SI-ERHWQTLNEEAGGMN----DVLYKLFCITQ--DPKHL 322 (872)
Q Consensus 256 ld~y~~tG~~~aL~va~~~ad~~~~~~-----~~~~~~~-~~-~~~~~~l~~E~GGmn----eaL~~LY~~TG--d~ryL 322 (872)
..-.+.||+++..+.+.+..+.+.+.. ..+.+.. +. ..-|.......||+. |-|.+.|-.+| |+.|+
T Consensus 154 ~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~ 233 (452)
T PF01532_consen 154 TRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYR 233 (452)
T ss_dssp HHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHH
T ss_pred hHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHH
Confidence 235778999999999999999997621 1111110 00 111111122345554 68889999999 88888
Q ss_pred HHhhhccc---cc-ccchhhc---------cC---CCCCCCcccCCcchhhHH-HHH-HHHhCChHHHHHHHHHHHH-Hh
Q 002872 323 MLAHLFDK---PC-FLGLLAL---------QA---DDISGFHSNTHIPIVIGS-QMR-YEVTGDQLHKTISMFFMDI-VN 383 (872)
Q Consensus 323 ~lA~~F~~---~~-~~~~l~~---------~~---D~l~g~HanthiP~~~G~-a~~-Y~~TGD~~y~~aa~~fwd~-V~ 383 (872)
++=+...+ .. ...+... .. ....-.|...|+-++.|. ..+ ...-+++.+++.|+...+. ..
T Consensus 234 ~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~~~~~~~~A~~l~~~C~~ 313 (452)
T PF01532_consen 234 DMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFNDEGDLELAEELTETCYW 313 (452)
T ss_dssp HHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccCchhHHHHHHHHHHHHHH
Confidence 66433211 00 1110000 00 011122445677766553 222 3344778888877766555 33
Q ss_pred ccCeeeecCCCCCCCCCCCcccc----------cCCCCCcccccchHHHHHHHHHHhcccCCchhHHHHHHHHhhhhcc
Q 002872 384 SSHTYATGGTSVGEFWSDPKRLA----------SNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLG 452 (872)
Q Consensus 384 ~~h~Y~TGG~g~~E~f~~p~~L~----------~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~iLa 452 (872)
-++.++||..- |.|.-..... ..+........-.-+.+.+.-+|+|+|||++|-|+-...+ +++-.
T Consensus 314 ~y~~~~tGl~P--E~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if-~ai~k 389 (452)
T PF01532_consen 314 LYKSTPTGLGP--EIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWDIF-QAIEK 389 (452)
T ss_dssp HHHTSSSSS----SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHHH-HHHHH
T ss_pred HHHhcccCCCc--eEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHHHH-HHHHH
Confidence 34555666443 3321110000 0000011122333477888999999999999999887654 55544
No 35
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=89.74 E-value=11 Score=45.41 Aligned_cols=257 Identities=14% Similarity=0.084 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCcc-c------cchHHHHHHHH
Q 002872 183 GHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWA-P------YYTIHKILAGL 255 (872)
Q Consensus 183 GhyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~-p------yy~~HkI~aGL 255 (872)
..+|.++--+|..++|+.|.+|+.++.+.|..+-+ .+.|.- ++..-+..-......|+ + .-++. ++ .
T Consensus 158 IR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFd-TptgiP--~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~-LE--F 231 (522)
T PTZ00470 158 IRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFN-EDTGFP--ASEINLATGRKSYPGWAGGCSILSEVGTLQ-LE--F 231 (522)
T ss_pred hhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-CCCCCC--cceeecccCCCCCcccCCCccchhhhhhHH-HH--H
Confidence 45666666677889999999999999999998865 244531 11100000001112232 1 11221 11 2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhhhhhhccc------cccccccccccccchH----HHHHHHHHHcC--CHHHHH
Q 002872 256 LDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYS------IERHWQTLNEEAGGMN----DVLYKLFCITQ--DPKHLM 323 (872)
Q Consensus 256 ld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~------~~~~~~~l~~E~GGmn----eaL~~LY~~TG--d~ryL~ 323 (872)
..-.+.||+++..+.+.+..+.+.+.-.. +.++- ....|..-..-.|++. |-|.+.|-++| |++|++
T Consensus 232 ~~LS~lTGd~kY~~~a~~i~~~l~~~~~~-~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~d~~~~~ 310 (522)
T PTZ00470 232 NYLSEITGDPKYAEYVDKVMDALFSMKPA-INGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGREERYRR 310 (522)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHhcCCC-CCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCCcHHHHH
Confidence 23477899999999999999999753211 11111 0111111112344444 66778899995 777776
Q ss_pred Hhhhccc---cccc-----chh-hccCCCCCCCcccCCcchhhH-HHHHHH-------HhCChHHHHHHHHHHHH-Hhcc
Q 002872 324 LAHLFDK---PCFL-----GLL-ALQADDISGFHSNTHIPIVIG-SQMRYE-------VTGDQLHKTISMFFMDI-VNSS 385 (872)
Q Consensus 324 lA~~F~~---~~~~-----~~l-~~~~D~l~g~HanthiP~~~G-~a~~Y~-------~TGD~~y~~aa~~fwd~-V~~~ 385 (872)
+-+...+ ..++ +.. ....+.-.-.|-..|+-++.| ...+.- ...++.|++.++...+. ...+
T Consensus 311 ~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~~Y 390 (522)
T PTZ00470 311 LFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYETY 390 (522)
T ss_pred HHHHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 5433210 0000 000 000000011244556665544 222221 12345677766655444 2223
Q ss_pred CeeeecCCCCCCCCCCC---cccccCC-CCCcccccchHHHHHHHHHHhcccCCchhHHHHHHHHhhhhcc
Q 002872 386 HTYATGGTSVGEFWSDP---KRLASNL-DSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLG 452 (872)
Q Consensus 386 h~Y~TGG~g~~E~f~~p---~~L~~~l-~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~iLa 452 (872)
+...||-. .|.|.-. .++.-.. ...| =---+.+.+.-.|+|+|||++|-|+-.+++ .+|-.
T Consensus 391 ~~~~tGl~--PE~~~~~~~~~~~~~~~~d~~Y---~LRPE~iES~fylyR~TgD~~yre~gW~~f-~ai~k 455 (522)
T PTZ00470 391 ATSPTGLG--PEIFHFDPNSGDISPNVHDSHY---ILRPETVESIFILYRLTGDPKYREWAWKIF-QAIEK 455 (522)
T ss_pred HhcccCCC--CceEEeccCccccccccCCCCC---CCChhHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHH
Confidence 34455533 2443211 0010000 0111 012345667788999999999999987744 55543
No 36
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=89.29 E-value=8.7 Score=44.70 Aligned_cols=128 Identities=15% Similarity=0.077 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCcceecCCc------hhhhhhhhc---CCC-----ccccch-HHHHHHHHHHHHHHc
Q 002872 198 NESLKEKMSAVVSALSACQKEIGSGYLSAFPT------EQFDRLEAL---IPV-----WAPYYT-IHKILAGLLDQYTYA 262 (872)
Q Consensus 198 D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~------~~f~~~~~l---~~~-----W~pyy~-~HkI~aGLld~y~~t 262 (872)
-+.+.+.+..=+|.|.+||. ++|.|-.--. ..|.+.+.. +.. ..|--. .-.+-|.|-.+++.-
T Consensus 93 ~~dllde~kwg~D~llkm~~--~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~ 170 (444)
T PF00759_consen 93 IPDLLDEAKWGLDWLLKMQD--SDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVF 170 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTBS--CTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccC--CCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999 6554322110 111111110 000 001101 111223333344443
Q ss_pred CC------hhHHHHHHHHHHHHHHHhhhhhhcccc--cccccc--ccccccchHHHHHHHHHHcCCHHHHHHhhhccc
Q 002872 263 DN------AEALRMTTWMVEYFYNRVQNVIKKYSI--ERHWQT--LNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (872)
Q Consensus 263 G~------~~aL~va~~~ad~~~~~~~~~~~~~~~--~~~~~~--l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F~~ 330 (872)
.+ ++.|+.|+++-+|..+.-......... ...... ...| +..+-+|||+.|||++|++.|+.+..
T Consensus 171 k~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~~~~~~~Y~~~~~~De---~~wAA~~Ly~aTg~~~Y~~~a~~~~~ 245 (444)
T PF00759_consen 171 KDFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQPNGGGFYNSSGYEDE---LAWAAAELYRATGDESYLDYAKEYYD 245 (444)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTSTCTTTTTSHCS-SHHH---HHHHHHHHHHHHT-HHHHHHHHHHCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCcccCCCcccH---HHHHHHHHHHhcCcHHHHHHHHHhHH
Confidence 33 578889999888886543221111000 000000 0111 33577899999999999999988754
No 37
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=88.90 E-value=5.9 Score=45.16 Aligned_cols=145 Identities=12% Similarity=0.017 Sum_probs=86.2
Q ss_pred chhhHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHhhcCCcceecC--Cch-hhhhh-hhcCCCccccchHHH-HHH
Q 002872 180 HFVGHYLSASALMWAST-HNESLKEKMSAVVSALSACQKEIGSGYLSAF--PTE-QFDRL-EALIPVWAPYYTIHK-ILA 253 (872)
Q Consensus 180 h~~GhyLsA~A~~~a~t-~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~--~~~-~f~~~-~~l~~~W~pyy~~Hk-I~a 253 (872)
|=..-.+.+++.++..+ .++..++.+.+.++.+.+.+.....|-..+. +.. ....- ........-||.+-. |..
T Consensus 172 HG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~ 251 (382)
T cd04793 172 HGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIAR 251 (382)
T ss_pred hcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHH
Confidence 55566788888888888 8999999999999998887763333311110 100 00000 000001111332211 555
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhcc
Q 002872 254 GLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFD 329 (872)
Q Consensus 254 GLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F~ 329 (872)
.++..++.+++++.++++.+...-+.++.... . ....+. .-|.-. |+-+.|.++|+.|+|+++++.|+++.
T Consensus 252 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~-lChG~~-G~~~~l~~~~~~~~~~~~~~~a~~~~ 322 (382)
T cd04793 252 ALQLAGKALDDQKLQEAAEKILKAALKDKKQL-S--KLISPT-LCHGLA-GLLFIFYLLYKDTNTNEFKSALEYLL 322 (382)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhChhhh-c--cCCCCC-cCccHH-HHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 66778889999999998888877654332110 0 000110 112211 67899999999999999999998764
No 38
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=88.59 E-value=4.2 Score=46.62 Aligned_cols=141 Identities=12% Similarity=0.045 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccccchHHHHHHH--HHHHH
Q 002872 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAG--LLDQY 259 (872)
Q Consensus 182 ~GhyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~pyy~~HkI~aG--Lld~y 259 (872)
.-|-+||+=..|..+++....++++++++.+..-+-..++|=+.-++...++-...-++- -.--+|-++-+ |++..
T Consensus 176 ~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~--~~ePGH~fEW~~Lll~~a 253 (388)
T COG2942 176 HMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGR--GIEPGHQFEWAWLLLDIA 253 (388)
T ss_pred chHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccC--CCCCchHHHHHHHHHHHH
Confidence 568999999999999999999999999999999998778887776653211000000000 02246776443 45778
Q ss_pred HHcCChhHHHHHHHHHHHHHHHh-----hhhhhccc--------cccccccccccccchHHHHHHHHHHcC-CHHHHHHh
Q 002872 260 TYADNAEALRMTTWMVEYFYNRV-----QNVIKKYS--------IERHWQTLNEEAGGMNDVLYKLFCITQ-DPKHLMLA 325 (872)
Q Consensus 260 ~~tG~~~aL~va~~~ad~~~~~~-----~~~~~~~~--------~~~~~~~l~~E~GGmneaL~~LY~~TG-d~ryL~lA 325 (872)
+..|+.+++..|.++.+=..+.= +..+-.+. .++.|- .+|. -.+++-|+..|| +++|++..
T Consensus 254 ~~~~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~Wp--Q~E~---l~AA~ala~~~~~~~~y~~~~ 328 (388)
T COG2942 254 RRRGRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWP--QTEA---LKAAVALAETTGARERYWQWY 328 (388)
T ss_pred HHhchhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhCh--HHHH---HHHHHHHHhcCCchHHHHHHH
Confidence 88999999999999887765421 11110000 112221 1342 258888999999 99999998
Q ss_pred hhcc
Q 002872 326 HLFD 329 (872)
Q Consensus 326 ~~F~ 329 (872)
.++.
T Consensus 329 ~R~~ 332 (388)
T COG2942 329 ARAW 332 (388)
T ss_pred HHHH
Confidence 8774
No 39
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=86.18 E-value=3.6 Score=45.92 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccccchHHH-HHHHHHHHHHHcCChhHHHHHHHHH
Q 002872 197 HNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHK-ILAGLLDQYTYADNAEALRMTTWMV 275 (872)
Q Consensus 197 ~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~pyy~~Hk-I~aGLld~y~~tG~~~aL~va~~~a 275 (872)
.++++.+-+..-|+.+.+-|. ++|-.-.--....|++ +.||-+-. +.--|..+|+.-+.++.|+.+...+
T Consensus 239 d~~~~~~dVK~sldym~~~rf--psGNyP~s~~~~~drL-------VhWcHGApGv~~~L~kAy~VF~Eekyl~aa~eca 309 (403)
T KOG2787|consen 239 DQPALLKDVKGSLDYMIQNRF--PSGNYPSSEGNKRDRL-------VHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECA 309 (403)
T ss_pred cchhHHHhhhhHHHHHHHccC--CCCCCCcccCCCccee-------eeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356788888889999987777 8775322111122222 22221110 1112567899999999999999999
Q ss_pred HHHHHHhhhhhhc-cccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhccc
Q 002872 276 EYFYNRVQNVIKK-YSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (872)
Q Consensus 276 d~~~~~~~~~~~~-~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F~~ 330 (872)
|-+.++ .++.+ ..+ -|... |-.-++.-||+.|||.+||-=|+.|-.
T Consensus 310 dvVW~r--GlLkkg~Gi------chGva-GNaYvFLsLyRLT~d~kYlyRA~kFae 356 (403)
T KOG2787|consen 310 DVVWKR--GLLKKGVGI------CHGVA-GNAYVFLSLYRLTGDMKYLYRAKKFAE 356 (403)
T ss_pred HHHHHh--hhhhcCCcc------ccccc-CchhhhHhHHHHcCcHHHHHHHHHHHH
Confidence 999764 12111 111 01111 233689999999999999999988853
No 40
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=81.42 E-value=13 Score=44.31 Aligned_cols=157 Identities=19% Similarity=0.330 Sum_probs=87.3
Q ss_pred hhHhHHHhcCCCCCC--CCCCCCCCCCcCcccchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecC
Q 002872 150 LVWNFRKTARLPAPG--EPYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAF 227 (872)
Q Consensus 150 lL~nFR~~AGl~~~g--~~ygGWE~~~~~l~Gh~~GhyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~ 227 (872)
-||+.|-.-||-+.- ..-|-|-.+++-| |--+=-+-|=+...|...+|+++.+.-.+--..|.+--++ ++=|....
T Consensus 227 ~lW~~RS~igLlGn~idV~tG~W~~~~sGI-GAgiDSfyEYllK~yILfgd~e~lemf~ea~~ai~~y~r~-~~wY~~V~ 304 (622)
T KOG2429|consen 227 ALWSLRSGIGLLGNHIDVQTGEWTAPDSGI-GAGIDSFYEYLLKGYILFGDPELLEMFNEAYEAIQKYTRK-GPWYVNVN 304 (622)
T ss_pred HHHhhcCCCCcccceeeccccceecccccc-ccchHHHHHHHHHHheecCCHHHHHHHHHHHHHHHHHhhc-CCeEEEEe
Confidence 367778776663211 1224487776554 3333345566778888899999988777766665544331 33232221
Q ss_pred C------chhhhhhhhcCCCccccchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--HHHhhhhhhcccc-------c
Q 002872 228 P------TEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYF--YNRVQNVIKKYSI-------E 292 (872)
Q Consensus 228 ~------~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~--~~~~~~~~~~~~~-------~ 292 (872)
- -.+|+.+++ ++.+-.+++ |+-+ +..+-+..|+ .++++-+++.++. .
T Consensus 305 m~~G~v~~p~~dSLqA-------fwpGlqvLa---------GDvd--~A~~~h~~y~~vwkkyG~lPEryN~~~~~~~~~ 366 (622)
T KOG2429|consen 305 MDSGSVSLPWFDSLQA-------FWPGLQVLA---------GDVD--DAIRTHLMYFSVWKKYGFLPERYNLATQEPPPK 366 (622)
T ss_pred cCCCceehHHHhhHHh-------hccchhhhh---------cchH--HHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Confidence 1 012222221 222222333 3322 2233333343 3445544333322 3
Q ss_pred cccccccccccchHHHHHHHHHHcCCHHHHHHhhhcc
Q 002872 293 RHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFD 329 (872)
Q Consensus 293 ~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F~ 329 (872)
+-++++.+| +.|+.+.||+.|+|+.||++-+.+.
T Consensus 367 ~~~YPLRPE---lvEStyyLYrATkdp~yL~vG~~~l 400 (622)
T KOG2429|consen 367 REGYPLRPE---LVESTYYLYRATKDPFYLHVGEDML 400 (622)
T ss_pred cccCCCCHH---HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 345678888 6899999999999999999987763
No 41
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=79.11 E-value=10 Score=45.01 Aligned_cols=140 Identities=23% Similarity=0.189 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHhhc-------CCcceecCCchhhhhhhh-cCCCccccch--HHHH
Q 002872 183 GHYLSASALMWASTH-NESLKEKMSAVVSALSACQKEI-------GSGYLSAFPTEQFDRLEA-LIPVWAPYYT--IHKI 251 (872)
Q Consensus 183 GhyLsA~A~~~a~t~-D~~L~~k~d~~Vd~L~~~Q~~~-------~dGYL~a~~~~~f~~~~~-l~~~W~pyy~--~HkI 251 (872)
|--||++|.+++.++ ++++.+.+...++.|.+.-... +.=|.++-. +.+. .+..|+|-+. .-.+
T Consensus 508 GLviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g-----~ve~~n~~~~~~~FldDYAFl 582 (786)
T KOG2244|consen 508 GLVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASG-----RVEHSNRPSKAPAFLDDYAFL 582 (786)
T ss_pred chhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCc-----ceeccCCccccchhhhhHHHH
Confidence 556899999998876 4599999888888776543311 223333321 1121 3456775321 1227
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhhhhcc-----ccccccccccccccch--------HHHHHHHHHHcCC
Q 002872 252 LAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKY-----SIERHWQTLNEEAGGM--------NDVLYKLFCITQD 318 (872)
Q Consensus 252 ~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~-----~~~~~~~~l~~E~GGm--------neaL~~LY~~TGd 318 (872)
..||||.|+.+|+..-|.-|.++-|--.+-|=+. .++ +++....-+.+.+-|- .--|++||.+++.
T Consensus 583 I~gLLDlYea~~~~e~LkwA~~LQdtqdklFWdg-ggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~ 661 (786)
T KOG2244|consen 583 ISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWDG-GGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAA 661 (786)
T ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHHHheecC-CceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhH
Confidence 8999999999999999998888877544322100 001 0000000011111111 1368999999999
Q ss_pred HHHHHHhhhc
Q 002872 319 PKHLMLAHLF 328 (872)
Q Consensus 319 ~ryL~lA~~F 328 (872)
+.||+-|.++
T Consensus 662 e~yl~ka~~l 671 (786)
T KOG2244|consen 662 ESYLNKAHRL 671 (786)
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 42
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=78.59 E-value=54 Score=39.29 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=66.2
Q ss_pred cccchhhHhHHHhcCCCCCCCCCCCCCCCCcCcccchhhHH-------HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 002872 145 LDVDKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHY-------LSASALMWASTHNESLKEKMSAVVSALSACQK 217 (872)
Q Consensus 145 ld~drlL~nFR~~AGl~~~g~~ygGWE~~~~~l~Gh~~Ghy-------LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~ 217 (872)
+.|-++.+-|..--|+...|. ....+|-.||+.||= .|+.|-- -...-+++++-+++--+.|-.+..
T Consensus 418 i~p~~~fdl~a~hygvk~sGn-----vs~ssDPhgel~gkNVL~vr~s~e~taan-f~lsve~~kkll~e~~e~L~~aR~ 491 (786)
T KOG2244|consen 418 IGPASLFDLFAEHYGVKKSGN-----VSSSSDPHGELAGKNVLIVRNSTEATAAN-FSLSVEKYKKLLGECREKLFDARL 491 (786)
T ss_pred CCcchHHHHHHHHcCCCCCCC-----CCCCCCCcccccCceEEEEecchHhhHhh-ccccHHHHHHHHHHHHHHHHHHhh
Confidence 556677777777778865543 223344556666653 2332211 123446677777776666665555
Q ss_pred hcCCcceecCCchhhhhhhhcCCCccccchHHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHhh
Q 002872 218 EIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNA-EALRMTTWMVEYFYNRVQ 283 (872)
Q Consensus 218 ~~~dGYL~a~~~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y~~tG~~-~aL~va~~~ad~~~~~~~ 283 (872)
+.+.=-|.. +. --.|-- +++.|+.-++..++-+ +.++-+...++++-+.+-
T Consensus 492 kRPkPHLDs---Ki-------i~sWnG-----LviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~ 543 (786)
T KOG2244|consen 492 KRPKPHLDS---KI-------IVSWNG-----LVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMI 543 (786)
T ss_pred cCCCCCccc---hh-------eeeccc-----hhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhh
Confidence 323222211 00 012221 2567887778877755 888999999998866543
No 43
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=76.97 E-value=4.8 Score=47.30 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHhhhhhhccccccc----cccccccccchHHHHHHHHHHcCCHHHHHHhhhc
Q 002872 253 AGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERH----WQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 328 (872)
Q Consensus 253 aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~----~~~l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F 328 (872)
..++-+|+..+++.+.++++.|++.+. ++++ ...+..+. ......- -+-.++.+||+.|++++||++|...
T Consensus 391 l~~vra~~~s~D~~Lw~~~~~m~~~~g--LGdi-g~~~~~~~~~~~~~~~~sp--~~L~allEL~~atq~~~~l~lA~~~ 465 (557)
T PF06917_consen 391 LPYVRAYRLSRDPELWDLARTMAHHFG--LGDI-GNAAGKEPRVNMQTDNASP--YLLFALLELYQATQDARYLELADQV 465 (557)
T ss_dssp HHHHHHHHHS--HHHHHHHHHHHHHTT---EE--TTBTTBS-EE-TT-----H--HHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcC--cccc-cCccccccccccCCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 346789999999999999999998662 2211 11110000 0000000 0235899999999999999999865
No 44
>PLN02909 Endoglucanase
Probab=76.44 E-value=46 Score=39.74 Aligned_cols=121 Identities=11% Similarity=0.045 Sum_probs=64.2
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcCCcceecC-Cc-----hhhhhhhhcCCCccccch----------HHHHHHHHHHHHH
Q 002872 197 HNESLKEKMSAVVSALSACQKEIGSGYLSAF-PT-----EQFDRLEALIPVWAPYYT----------IHKILAGLLDQYT 260 (872)
Q Consensus 197 ~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~-~~-----~~f~~~~~l~~~W~pyy~----------~HkI~aGLld~y~ 260 (872)
+-+.+++.+..-+|.|.+||. .+|-+-.- .. ..|.+=|+.+.. -|.|. -...-|+|-.+++
T Consensus 118 ~~~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~-R~~~~i~~~~pgtd~a~~~AAAlA~as~ 194 (486)
T PLN02909 118 ELENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQCWVRPENMKTP-RTVLEIDEKTPGTEIAAETAAAMAASSM 194 (486)
T ss_pred ChHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhccCC-ceeEecCCCCCCcHHHHHHHHHHHHHHH
Confidence 347889999999999999998 55543211 00 011111111100 11221 2223344444454
Q ss_pred HcCC------hhHHHHHHHHHHHHHHHhhhhhhccccc-ccccc---ccccccchHHHHHHHHHHcCCHHHHHHhhh
Q 002872 261 YADN------AEALRMTTWMVEYFYNRVQNVIKKYSIE-RHWQT---LNEEAGGMNDVLYKLFCITQDPKHLMLAHL 327 (872)
Q Consensus 261 ~tG~------~~aL~va~~~ad~~~~~~~~~~~~~~~~-~~~~~---l~~E~GGmneaL~~LY~~TGd~ryL~lA~~ 327 (872)
.-.+ ++.|+-|+++-+|..+.- .. +... ..... ...| +..+-+|||+.|||++||+.++.
T Consensus 195 vfk~~D~~yA~~lL~~Ak~~y~fA~~~~-g~---y~~~~~~y~s~s~y~DE---l~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 195 VFRHVDHKYSRRLLNKAKLLFKFAKAHK-GT---YDGECPFYCSYSGYNDE---LLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHhCC-CC---cCCCCCccccCCCcchH---HHHHHHHHHHHhCCHHHHHHHHh
Confidence 4332 467888888888876531 11 1110 00000 0122 34677899999999999997654
No 45
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=76.28 E-value=3.9 Score=45.36 Aligned_cols=178 Identities=15% Similarity=0.074 Sum_probs=95.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhh-h-cCCCccccchHHHHHHHHHHHH-HHcCCh
Q 002872 189 SALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLE-A-LIPVWAPYYTIHKILAGLLDQY-TYADNA 265 (872)
Q Consensus 189 ~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~-~-l~~~W~pyy~~HkI~aGLld~y-~~tG~~ 265 (872)
+...+..++++.+.+.+..+++.|.+... ... . .. ......|. . ..-..+.=.++ |+..|...| +.++++
T Consensus 115 ll~~~~~~~~~~~l~~i~~~~~~l~~~~~--~~~-~-~~-~~~~~~~~~~~~~~G~aHG~~G--i~~~L~~~~~~~~~~~ 187 (355)
T PF05147_consen 115 LLSLYEKTKDPKYLDIIEKILEKLLESII--NDD-P-SE-NQIGSEWKEGFINLGFAHGIAG--ILYALLRLYKKGTKDP 187 (355)
T ss_dssp HCCHHHHHCCHHS-HHHHHHHHHCCCHHC--CCH-T-CC-GSSSHHCHTTBEE-STTTSHHH--HHHHHCHCCHHT--HH
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHh--hcc-c-cc-CCCccccCCCCccCCccccHHH--HHHHHHHhhhcccCch
Confidence 33344556888888888888888877666 211 0 00 00111111 0 00011111122 455565667 588899
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhccccccccccccc---------ccc--chHHHHHHHHHHcCCHHHHHHhhhccccccc
Q 002872 266 EALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNE---------EAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCFL 334 (872)
Q Consensus 266 ~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~---------E~G--GmneaL~~LY~~TGd~ryL~lA~~F~~~~~~ 334 (872)
+.++++.++.+|..+........ |...... =+| ||..++.++++.++|+.+.+.++.+......
T Consensus 188 ~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (355)
T PF05147_consen 188 EYLKLIEQILNFLLKHFNTDDGG-----WPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDDEEYDEEAEQALESILQ 262 (355)
T ss_dssp HHHHCHHHHHHHHHHC--TGCCT-------SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCcccCC-----CCCCCCccccccccccccCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 99999999999997655221011 1111111 134 7889999999999999999988876432111
Q ss_pred chhhccCCCCCCCcccCCcc--hhhHHHHHHHHhCChHHHHHHHHHHHHHhc
Q 002872 335 GLLALQADDISGFHSNTHIP--IVIGSQMRYEVTGDQLHKTISMFFMDIVNS 384 (872)
Q Consensus 335 ~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~ 384 (872)
... .......-|.- ++.-...+|+.++++.|++.++.+++.+.+
T Consensus 263 -----~~~-~~~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
T PF05147_consen 263 -----KGL-FLNNPSLCHGTAGILEILLDLYKYTGDEEYKELANKLIQKLLS 308 (355)
T ss_dssp -----H-T-CTTSS-STTSHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHCT
T ss_pred -----ccc-cCCCCceeCchHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 000 00001122222 122256779999999999999999988864
No 46
>PLN02175 endoglucanase
Probab=76.00 E-value=17 Score=43.19 Aligned_cols=103 Identities=14% Similarity=-0.050 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhccccccc--cccccccccch----HHHHHHHHHHcCCHHHHHHhhhcccccccchhh
Q 002872 265 AEALRMTTWMVEYFYNRVQNVIKKYSIERH--WQTLNEEAGGM----NDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLA 338 (872)
Q Consensus 265 ~~aL~va~~~ad~~~~~~~~~~~~~~~~~~--~~~l~~E~GGm----neaL~~LY~~TGd~ryL~lA~~F~~~~~~~~l~ 338 (872)
++.|+.|+++-+|..+.-+. +..... ....-+..+|. -.+-+|||+.|||++||+.++.+....
T Consensus 194 ~~lL~~Ak~ly~fA~~~~g~----y~~~~~~~~~~~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~~~~~~~~~~------ 263 (484)
T PLN02175 194 RLLLATAKKVMQFAIQYRGA----YSDSLSSSVCPFYCSYSGYKDELMWGASWLLRATNDPYYANFIKSLGGGD------ 263 (484)
T ss_pred HHHHHHHHHHHHHHHhCCCC----cccCccccccCccccCCCccHHHHHHHHHHHHHhCCHHHHHHHHHcCCCC------
Confidence 36788888888888653221 111000 00000111222 357789999999999998776542110
Q ss_pred ccCCCCCCCcccCCcchhhHHHHH-HHH------hCChHHHHHHHHHHHHHhc
Q 002872 339 LQADDISGFHSNTHIPIVIGSQMR-YEV------TGDQLHKTISMFFMDIVNS 384 (872)
Q Consensus 339 ~~~D~l~g~HanthiP~~~G~a~~-Y~~------TGD~~y~~aa~~fwd~V~~ 384 (872)
......+ --+..|.+++ +++ ++.+.|++.+++|+.....
T Consensus 264 -~~~~~~W------d~k~~g~~vLla~~~~~~~~~~~~~y~~~~~~~~~~~~~ 309 (484)
T PLN02175 264 -QPDIFSW------DNKYAGAYVLLSRRALLNKDSNFEQYKQAAENFICKILP 309 (484)
T ss_pred -CCCccCC------cCHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccC
Confidence 0001111 0133454443 332 3445889888999887653
No 47
>PLN00119 endoglucanase
Probab=74.88 E-value=41 Score=40.18 Aligned_cols=125 Identities=10% Similarity=-0.052 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCcceecC-Cc-----hhhhhhhhcCCCccccc----------hHHHHHHHHHHHHHH
Q 002872 198 NESLKEKMSAVVSALSACQKEIGSGYLSAF-PT-----EQFDRLEALIPVWAPYY----------TIHKILAGLLDQYTY 261 (872)
Q Consensus 198 D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~-~~-----~~f~~~~~l~~~W~pyy----------~~HkI~aGLld~y~~ 261 (872)
-+.+.+.+..-.|.|.+||. .+|.|-.- .. ..|.+=|+.... -|.| ..-.+-|+|-.+++.
T Consensus 116 ~~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~-R~~y~i~~~~pgSd~a~~~AAAlA~as~v 192 (489)
T PLN00119 116 LGNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTP-RTSYRIDAQHPGSDLAGETAAAMAAASIA 192 (489)
T ss_pred cHHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCc-CceeecCCCCCchHHHHHHHHHHHHHHHH
Confidence 45688888889999999997 44433210 00 011111111100 0111 112233444344444
Q ss_pred cCC------hhHHHHHHHHHHHHHHHhhhhhhcccccccccc---ccccccchHHHHHHHHHHcCCHHHHHHhhhc
Q 002872 262 ADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQT---LNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 328 (872)
Q Consensus 262 tG~------~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~---l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F 328 (872)
-.+ ++.|+.|+++-+|..+.-+..-...+.....+. ...| +..+=+|||+.|||+.|++.++..
T Consensus 193 fk~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~~~g~Y~ss~~~DE---l~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 193 FAPSDPAYASILIGHAKDLFEFAKAHPGLYQNSIPNAGGFYASSGYEDE---LLWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCCchhhH---HHHHHHHHHHHhCCHHHHHHHHhc
Confidence 332 467888888888886531110000000000000 0112 346778999999999999987644
No 48
>PF15095 IL33: Interleukin 33; PDB: 2KLL_A.
Probab=74.46 E-value=31 Score=36.80 Aligned_cols=115 Identities=20% Similarity=0.274 Sum_probs=59.0
Q ss_pred CCCcceeeeeecCCceEEEeecCCceeeeecCCCCCccccceEEEEEecCCCCCccccccCCCCccc--ccCCCCCCCce
Q 002872 671 YNSQLITFTQEYGNTKFVLTNSNQSITMEKFPKSGTDAALHATFRLILNDSSGSEFSSLNDFIGKSV--MLEPFDSPGML 748 (872)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gt~~~~~~~fr~~~~~~~~~~~~~p~~~~g~~v--~l~p~~~p~~~ 748 (872)
||+|-++|.-++|.-.+. ++-. ..-+.---..||.......++ .+..+.+|+.+ .+.|-..++-.
T Consensus 130 YNDQsitFvledgsY~I~---------VeDl--~k~qEKDKVLlryYeSq~pS~--esgdgvDGk~LMVnlSPtkdkDf~ 196 (268)
T PF15095_consen 130 YNDQSITFVLEDGSYEIY---------VEDL--GKDQEKDKVLLRYYESQCPSS--ESGDGVDGKKLMVNLSPTKDKDFL 196 (268)
T ss_dssp TTTEEEEEEE-SS-EEEE---------EEE----S------EEEEEEE----TT--TS----S---EEEEEESS--SSEE
T ss_pred ccCceEEEEEeCCcEEEE---------ehhc--ccccccceEEEEeccCCCCcc--cCCCCccceEEEEEcCCccchheE
Confidence 566666665555532222 2222 122334456788765432221 12233566665 78999999988
Q ss_pred EEeecCCceEEEecCCCCCCCceEEEeeccCCCCCeEEEeecCCcceEEEEe
Q 002872 749 VIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTA 800 (872)
Q Consensus 749 v~~~~~~~~l~v~~~~~~~~~s~f~~vpgl~g~~g~vsles~~~pg~~~~~~ 800 (872)
+-..+.+-+|-+.---.+.+|..|.+.--- .+..||||-.|+||.|+-+-
T Consensus 197 LHAN~keHSVeLqKcE~~lpdQaff~lh~~--ss~~vsfeck~~pg~~igvk 246 (268)
T PF15095_consen 197 LHANNKEHSVELQKCENPLPDQAFFVLHKK--SSECVSFECKNNPGVFIGVK 246 (268)
T ss_dssp EEEETTTTEEEEEE--SS--TTT-EEEEE---SSS-EEEEESSSTTEEEEES
T ss_pred EecCCccceeeeeecCCCCCcceeEEEecC--CCceeEEEecCCCceEEeee
Confidence 877778887877766667888888887433 36899999999999999654
No 49
>PLN02266 endoglucanase
Probab=71.43 E-value=73 Score=38.35 Aligned_cols=156 Identities=11% Similarity=0.089 Sum_probs=76.2
Q ss_pred CCCCCCCCcCcccchhhHHHHHHHHHHHh--------cCChHHHHHHHHHHHHHHHHHhhcCCcceec-CCch-----hh
Q 002872 167 YGGWEEPSCELRGHFVGHYLSASALMWAS--------THNESLKEKMSAVVSALSACQKEIGSGYLSA-FPTE-----QF 232 (872)
Q Consensus 167 ygGWE~~~~~l~Gh~~GhyLsA~A~~~a~--------t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a-~~~~-----~f 232 (872)
-|||-+.+=.++=.+++.| ++.-++|+. .+-+.+++.+..-.|.|.+||. .||-+-. .... .|
T Consensus 91 sGGwyDAGD~~Kf~~p~a~-s~t~L~w~~~ef~~~~~~~~pd~Ldelkw~~D~llk~~~--~~~~vy~qVg~~~~Dh~~W 167 (510)
T PLN02266 91 VGGYYDAGDNVKFGFPMAF-TTTMLSWSVIEFGGLMKSELQNAKDAIRWATDYLLKATA--HPDTIYVQVGDANKDHACW 167 (510)
T ss_pred CCcceeCCCCceecchHHH-HHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccC
Confidence 3688655433443344444 332222321 2357888999999999999997 4443321 1000 01
Q ss_pred hhhhhcCCCccccch----------HHHHHHHHHHHHHHcCC------hhHHHHHHHHHHHHHHHhhhhhhccccccccc
Q 002872 233 DRLEALIPVWAPYYT----------IHKILAGLLDQYTYADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQ 296 (872)
Q Consensus 233 ~~~~~l~~~W~pyy~----------~HkI~aGLld~y~~tG~------~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~ 296 (872)
.+=|+... --|.|. .-..-|+|-.+++.-.+ ++.|+.|+++-+|..+.-+.. .. .+.....
T Consensus 168 ~~Pe~~~~-~R~~y~i~~~~pgsd~a~e~AAALAaas~vfk~~D~~yA~~~L~~Ak~ly~fa~~~~g~y-~~-~~~~~~~ 244 (510)
T PLN02266 168 ERPEDMDT-PRSVFKVDKNTPGSDVAAETAAALAAASLVFRKSDPTYSKLLVRRAIRVFQFADKYRGAY-SN-GLKPDVC 244 (510)
T ss_pred CChhhcCC-CCeeEEeCCCCCchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCc-cC-CCCcccC
Confidence 11111110 001121 11123444344544332 467888888888886431110 00 0000000
Q ss_pred cccccccc----hHHHHHHHHHHcCCHHHHHHhhhc
Q 002872 297 TLNEEAGG----MNDVLYKLFCITQDPKHLMLAHLF 328 (872)
Q Consensus 297 ~l~~E~GG----mneaL~~LY~~TGd~ryL~lA~~F 328 (872)
..-...+| +..+-+|||+.|||++||+.++..
T Consensus 245 ~~y~s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~~~ 280 (510)
T PLN02266 245 PFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQVN 280 (510)
T ss_pred CCcccCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 00011122 235778999999999999987654
No 50
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=71.01 E-value=13 Score=41.20 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccccchHHHHHHHHHHHHH
Q 002872 182 VGHYLSASALMW-ASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYT 260 (872)
Q Consensus 182 ~GhyLsA~A~~~-a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y~ 260 (872)
.--.+-+++.++ ..++++++++.+..+++.+.+.+....++|..........+ ...|--=-.+ |...++..+.
T Consensus 169 ~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~WC~G~~G--i~~~~~~~~~ 242 (355)
T PF05147_consen 169 IAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKS----RPSWCYGSPG--ILLALLKAYK 242 (355)
T ss_dssp HHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC------SSSSSHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCcccccc----ccccccCcHH--HHHHHHHHHH
Confidence 344566666666 48889999999999999999998644566543332211000 2222211122 4445567788
Q ss_pred HcCChhHHHHHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhcc
Q 002872 261 YADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFD 329 (872)
Q Consensus 261 ~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F~ 329 (872)
..+++...+.+......+.++-. . .. . ...-|.- -|+-+.|..+|+.|++++|.+.|+.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~--~-~~lCHG~-aG~~~~l~~~~~~~~~~~~~~~~~~~~ 303 (355)
T PF05147_consen 243 ILDDEEYDEEAEQALESILQKGL-F---LN--N-PSLCHGT-AGILEILLDLYKYTGDEEYKELANKLI 303 (355)
T ss_dssp HCT-HHHHHHHHHHHHHHHHH-T-C---TT--S-S-STTSH-HHHHHHHHHHHHHH--HCCHHHHHHHH
T ss_pred hhchHHHHHHHHHHHHHHHHccc-c---CC--C-CceeCch-HHhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999988888888777654210 0 00 0 0011222 267789999999999999999998873
No 51
>PLN02345 endoglucanase
Probab=69.61 E-value=46 Score=39.57 Aligned_cols=123 Identities=11% Similarity=0.069 Sum_probs=63.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCcceecC-Cch-----hhhhhhhcCCCccccch----------HHHHHHHHHHHHHH
Q 002872 198 NESLKEKMSAVVSALSACQKEIGSGYLSAF-PTE-----QFDRLEALIPVWAPYYT----------IHKILAGLLDQYTY 261 (872)
Q Consensus 198 D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~-~~~-----~f~~~~~l~~~W~pyy~----------~HkI~aGLld~y~~ 261 (872)
-+.+++.+..-.|.|.+||. .||-+-.- ... .|.+=|+.. .--|.|. --.+-|+|-.+++.
T Consensus 81 ~~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~-~~R~~~~~~~~~pgsd~a~~~AAAlA~as~v 157 (469)
T PLN02345 81 LDSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHKCWERPETMD-EKRPLTKINTSSPGSEVAAETAAAMAAASLV 157 (469)
T ss_pred hHHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcccCCChhhcC-CcceEEecCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46888889999999999998 55543210 000 111111111 0112221 11233444344444
Q ss_pred cCC------hhHHHHHHHHHHHHHHHhhhhhhcccc-cccccc--ccccccchHHHHHHHHHHcCCHHHHHHhh
Q 002872 262 ADN------AEALRMTTWMVEYFYNRVQNVIKKYSI-ERHWQT--LNEEAGGMNDVLYKLFCITQDPKHLMLAH 326 (872)
Q Consensus 262 tG~------~~aL~va~~~ad~~~~~~~~~~~~~~~-~~~~~~--l~~E~GGmneaL~~LY~~TGd~ryL~lA~ 326 (872)
-.+ .+.|+-|+++-+|..+.-+......+. ...-.. ...| +..+-+|||+.|||++||+.+.
T Consensus 158 fk~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~Y~s~~~~DE---l~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 158 FKSSDSTYSDTLLKHAKQLFNFADKYRGSYSESIPEVQDYYNSTGYGDE---LLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCccCCCCCCcccccH---HHHHHHHHHHHhCCHHHHHHHH
Confidence 333 467888888888876532110000000 000000 0112 3467889999999999999874
No 52
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=66.46 E-value=87 Score=39.74 Aligned_cols=155 Identities=18% Similarity=0.161 Sum_probs=83.5
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHhhcCCc-ceecCCchhhhhhhhcCCCccccchHHHHHHHHHHHHHHcCChhHHHHHH
Q 002872 194 ASTHNESLKEKMSAVVSALSACQKEIGSG-YLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTT 272 (872)
Q Consensus 194 a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dG-YL~a~~~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va~ 272 (872)
..|+...+++.+.+++..+.+.-...-.+ =++++. +.-.-.| +|.--+.++++..+..=+.
T Consensus 661 ~vtgk~~Y~~ia~~~L~~~~~sv~~~~~~~~iga~~-----------G~~g~~y-------al~~I~~~~~~~~l~~~~~ 722 (963)
T COG4403 661 LVTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAFT-----------GLSGYFY-------ALWKIYSVTRDNYLIQSAE 722 (963)
T ss_pred HhcChHHHHHHHHHHHHHHHHhhhhccCCccccccc-----------ccchhhh-------hhHHHHHhcccHHHHHHHH
Confidence 46899999999988877766553311111 112221 1111233 3344566778877666666
Q ss_pred HHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHHcCCHHHHHHhhhcccccccchhhccCCCCC-CCcccC
Q 002872 273 WMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDIS-GFHSNT 351 (872)
Q Consensus 273 ~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F~~~~~~~~l~~~~D~l~-g~Hant 351 (872)
+.+..+...... - +-...++.-. |.--+|+.+|+.|.+||.|++|.-.-+..+-. ..+.|.-. -...-.
T Consensus 723 ~~i~~le~~v~~----~---~~~d~i~Gl~-g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~--~v~~d~s~~~l~gfs 792 (963)
T COG4403 723 NSIRHLEILVQK----S---KDPDFINGLA-GVICVLVSIYKLTDEPKFLELAISLGRILMEK--IVGNDSSETVLLGFS 792 (963)
T ss_pred HHHHHHHHHHhh----c---cCcchhhccH-HHHHHHHHHHhhccchHHHHHHHHHHHHHHHH--hhccccccceecccc
Confidence 666655443221 0 0011111111 34468999999999999999997654322211 11122110 011123
Q ss_pred Ccc--hhhHHHHHHHHhCChHHHHHHH
Q 002872 352 HIP--IVIGSQMRYEVTGDQLHKTISM 376 (872)
Q Consensus 352 hiP--~~~G~a~~Y~~TGD~~y~~aa~ 376 (872)
|.. ++...+.+|++|||+.+++..+
T Consensus 793 hg~sgi~~tL~~ly~~T~e~~l~~~i~ 819 (963)
T COG4403 793 HGASGIILTLLKLYEATGEESLLKKIK 819 (963)
T ss_pred cchHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 333 2334577899999998876544
No 53
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=63.34 E-value=9.6 Score=43.95 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhh--hhhccc--c------cccc--ccccccccchHHHHHHHHHHcC
Q 002872 250 KILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQN--VIKKYS--I------ERHW--QTLNEEAGGMNDVLYKLFCITQ 317 (872)
Q Consensus 250 kI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~--~~~~~~--~------~~~~--~~l~~E~GGmneaL~~LY~~TG 317 (872)
.|+-|||.+|..+|++-.|+.|..++|-+..-|+. .|+.-+ + .-+| .+...|.--+-+-+-.|-++||
T Consensus 179 RvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SStaEvttiQlEfr~Ls~ltg 258 (546)
T KOG2431|consen 179 RVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTAEVTTIQLEFRYLSRLTG 258 (546)
T ss_pred HHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchhhheeeeeeHHHHHhhcC
Confidence 47889999999999999999999999988777642 111100 0 0112 1111233333445678899999
Q ss_pred CHHHHHHhhhccc
Q 002872 318 DPKHLMLAHLFDK 330 (872)
Q Consensus 318 d~ryL~lA~~F~~ 330 (872)
|++|-++|.+..+
T Consensus 259 d~kY~~~a~kv~e 271 (546)
T KOG2431|consen 259 DPKYEELAEKVTE 271 (546)
T ss_pred CchHHHHHHHHHH
Confidence 9999999988643
No 54
>PLN02340 endoglucanase
Probab=62.86 E-value=1.1e+02 Score=37.64 Aligned_cols=125 Identities=10% Similarity=-0.055 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCcceecC------CchhhhhhhhcCCCccccch----------HHHHHHHHHHHHHH
Q 002872 198 NESLKEKMSAVVSALSACQKEIGSGYLSAF------PTEQFDRLEALIPVWAPYYT----------IHKILAGLLDQYTY 261 (872)
Q Consensus 198 D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~------~~~~f~~~~~l~~~W~pyy~----------~HkI~aGLld~y~~ 261 (872)
-+.+.+.+..-.|.|.+||. .++-|-.- .-..|.+=|+....- |.|. -..+-|+|-++++.
T Consensus 115 ~~~~ldeirw~~Dyllk~~~--~~~~~~~qVGdg~~DH~~W~~PE~~~~~R-~~y~i~~~~pgSd~a~e~AAAlAaas~v 191 (614)
T PLN02340 115 MQRTLWAIRWGTDYFIKAHT--QPNVLWGQVGDGDSDHYCWERAEDMTTPR-TAYKLDQNHPGSDLAGETAAALAAASKA 191 (614)
T ss_pred hHHHHHHHHHHHHHHHHhcC--CCCeEEEEeCCCCcccccCCChhhcCCcC-ceeecCCCCCccHHHHHHHHHHHHHHHh
Confidence 47888889999999999987 43332110 001111111111100 1110 11233444444443
Q ss_pred cCC------hhHHHHHHHHHHHHHHHhhhhhhcccc-cccccc--ccccccchHHHHHHHHHHcCCHHHHHHhhhc
Q 002872 262 ADN------AEALRMTTWMVEYFYNRVQNVIKKYSI-ERHWQT--LNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 328 (872)
Q Consensus 262 tG~------~~aL~va~~~ad~~~~~~~~~~~~~~~-~~~~~~--l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F 328 (872)
-.+ ++.|+-|+++-+|..+.-+..-...+. ...... ...| +..+=+|||+.|||++||+.+...
T Consensus 192 fk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~s~~~a~~~Y~ss~~~DE---l~WAAawLy~ATgd~~Yl~~~~~~ 264 (614)
T PLN02340 192 FKPYNSSYSDLLLVHAKQLFSFADKFRGLYDDSIQNAKKFYTSSGYSDE---LLWAAAWLYRATGDEYYLKYVVDN 264 (614)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhCCCCccCCCCccccCCCCCCcchH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 322 467888888888886532211000000 000000 1122 345778999999999999988754
No 55
>PLN02613 endoglucanase
Probab=62.80 E-value=1.1e+02 Score=36.80 Aligned_cols=122 Identities=13% Similarity=0.096 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHHHHHHHHHhh-------cCCcceecCCchhhhhhhhc---CCCcc-----ccch-HHHHHHHHHHHHH
Q 002872 197 HNESLKEKMSAVVSALSACQKE-------IGSGYLSAFPTEQFDRLEAL---IPVWA-----PYYT-IHKILAGLLDQYT 260 (872)
Q Consensus 197 ~D~~L~~k~d~~Vd~L~~~Q~~-------~~dGYL~a~~~~~f~~~~~l---~~~W~-----pyy~-~HkI~aGLld~y~ 260 (872)
+.+.+++.+..-.|.|.+||.. .+||-.. -..|.+=|.. +.... |--. --..-|+|-.+++
T Consensus 110 ~~~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~d---H~~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~ 186 (498)
T PLN02613 110 QLGYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNAD---HQCWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASL 186 (498)
T ss_pred CchHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCcc---ccccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHH
Confidence 4578999999999999999862 1333210 0011110111 11110 1100 1123334434445
Q ss_pred HcCC------hhHHHHHHHHHHHHHHHhhhhhhccccccccccccccccc----hHHHHHHHHHHcCCHHHHHHhhhc
Q 002872 261 YADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGG----MNDVLYKLFCITQDPKHLMLAHLF 328 (872)
Q Consensus 261 ~tG~------~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GG----mneaL~~LY~~TGd~ryL~lA~~F 328 (872)
.-.+ ++.|+.|+++-+|..+.-+. +.... ..-...+| +..+-+|||..|||++||+.++..
T Consensus 187 vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g~----y~~~~---~~y~s~s~~~DEl~WAAawLy~aTGd~~Yl~~~~~~ 257 (498)
T PLN02613 187 VFKDVDSSYSSKLLNHARSLFEFADKYRGS----YQASC---PFYCSYSGYQDELLWAAAWLYKATGEKKYLNYVISN 257 (498)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHHHhCCCC----cCCCC---CcccccCccchHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4332 46788888888888653111 11100 00011111 335778999999999999977653
No 56
>PLN02308 endoglucanase
Probab=57.39 E-value=1.5e+02 Score=35.52 Aligned_cols=123 Identities=8% Similarity=-0.058 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCcceecC-Cc-----hhhhhhhhcCCCccccch----------HHHHHHHHHHHHHHc
Q 002872 199 ESLKEKMSAVVSALSACQKEIGSGYLSAF-PT-----EQFDRLEALIPVWAPYYT----------IHKILAGLLDQYTYA 262 (872)
Q Consensus 199 ~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~-~~-----~~f~~~~~l~~~W~pyy~----------~HkI~aGLld~y~~t 262 (872)
+.+++.+..-.|.|.+||. +||.+-.- .. ..|.+=|+... --|.|. ....-|+|-.+++.-
T Consensus 112 ~~~ldeikw~~D~llkm~~--~~~~vy~qVg~~~~dh~~W~~Pe~~~~-~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf 188 (492)
T PLN02308 112 ENAVKAVKWATDYLMKATA--IPNVVYVQVGDAYSDHNCWERPEDMDT-LRTVYKIDPSHPGSDVAGETAAALAAASIVF 188 (492)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEecCCCCCccCCCChhHcCC-cceEEecCCCCCcchHHHHHHHHHHHHHHhc
Confidence 4566777888999999998 66654311 00 01111111110 001121 122334444455554
Q ss_pred CC------hhHHHHHHHHHHHHHHHhhhhhhccccc--cccc---cccccccchHHHHHHHHHHcCCHHHHHHhhh
Q 002872 263 DN------AEALRMTTWMVEYFYNRVQNVIKKYSIE--RHWQ---TLNEEAGGMNDVLYKLFCITQDPKHLMLAHL 327 (872)
Q Consensus 263 G~------~~aL~va~~~ad~~~~~~~~~~~~~~~~--~~~~---~l~~E~GGmneaL~~LY~~TGd~ryL~lA~~ 327 (872)
.+ ++.|+.|+++-+|..+.-+......... .... -...| +..+-+|||+.|||++||+.+..
T Consensus 189 ~~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~~Y~~~s~~~DE---l~WAAawLy~ATgd~~Yl~~~~~ 261 (492)
T PLN02308 189 RKRDPAYSRLLLDRAVRVFAFADKYRGAYSSSLHAAVCPFYCDFNGYQDE---LLWGAAWLHKASRRREYREYIVK 261 (492)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccCCCcCCCCcccHH---HHHHHHHHHHHhCCHHHHHHHHH
Confidence 32 4678888888888865321100000000 0000 00122 23577899999999999997654
No 57
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=55.36 E-value=14 Score=41.18 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHHhcccCCchhHHHHHHHHhhhhcccCCCCCCCcEEEeccCCC
Q 002872 417 CTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAP 470 (872)
Q Consensus 417 Cas~nmlkl~~~Lf~~tgd~~YaD~~ERaLyN~iLa~q~~~d~g~~~Y~~PL~~ 470 (872)
=+|+.-|++.-++++.++|.+|-|-++|++ |-||+.|++ +||=.. +-|+..
T Consensus 44 ~aT~~e~~fLa~~y~~t~d~~y~~A~~rgl-d~LL~aQyp-nGGWPQ-f~p~~~ 94 (290)
T TIGR02474 44 GATVTEIRYLAQVYQQEKNAKYRDAARKGI-EYLLKAQYP-NGGWPQ-FYPLKG 94 (290)
T ss_pred ccHHHHHHHHHHHHHhcCchhHHHHHHHHH-HHHHhhhCC-CCCcCc-ccCCcC
Confidence 466777888889999999999999999999 999999997 555333 337654
No 58
>PLN02420 endoglucanase
Probab=54.46 E-value=2e+02 Score=34.91 Aligned_cols=169 Identities=10% Similarity=0.049 Sum_probs=80.5
Q ss_pred HHHhcCCCCCC-----CCCCCCCCCCcCcccchhhHH-HHHHHHHHHh--------cCChHHHHHHHHHHHHHHHHHhhc
Q 002872 154 FRKTARLPAPG-----EPYGGWEEPSCELRGHFVGHY-LSASALMWAS--------THNESLKEKMSAVVSALSACQKEI 219 (872)
Q Consensus 154 FR~~AGl~~~g-----~~ygGWE~~~~~l~Gh~~Ghy-LsA~A~~~a~--------t~D~~L~~k~d~~Vd~L~~~Q~~~ 219 (872)
+|..+++. +| .--|||-+.+=.++=.+++.| +..++..|.. .+-+.+.+.++.-.|.|.+||.
T Consensus 69 Wr~~s~~~-Dg~~~~~DlsGGwyDAGD~~Kf~~p~a~t~~~L~w~~~ef~d~~~~~g~~~d~Ldeikw~lD~llk~~~-- 145 (525)
T PLN02420 69 WRDHSGLT-DGLEQGVDLVGGYHDAGDHVKFGLPMAFTVTMLSWSVIEYGDQLASTGELSHALEAIKWGTDYFIKAHT-- 145 (525)
T ss_pred ccccCcCc-CCCcCcccCCCcceecCccceecchHHHHHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhCc--
Confidence 67767765 33 244788665433333344443 1122222211 2357889999999999999997
Q ss_pred CCcceec-CC-----chhhhhhhhc---CCCcc-----ccch-HHHHHHHHHHHHHHcCC------hhHHHHHHHHHHHH
Q 002872 220 GSGYLSA-FP-----TEQFDRLEAL---IPVWA-----PYYT-IHKILAGLLDQYTYADN------AEALRMTTWMVEYF 278 (872)
Q Consensus 220 ~dGYL~a-~~-----~~~f~~~~~l---~~~W~-----pyy~-~HkI~aGLld~y~~tG~------~~aL~va~~~ad~~ 278 (872)
.++-+-. .- -..|.+=|+. +.... |--. ....-|.|-.+++.-.+ ++.|+.|+++-+|.
T Consensus 146 ~~~~~~~qvGdg~~DH~~w~~Pe~~~~~R~~~~i~~~~pgsd~aa~~AAALA~AS~vfk~~D~~YA~~~L~~Ak~ly~fA 225 (525)
T PLN02420 146 SPNVLWAEVGDGDTDHYCWQRPEDMTTSRRAFKIDENNPGSDIAGETAAAMAAASIVFRSTNPHYSHLLLHHAQQLFEFG 225 (525)
T ss_pred CCCceEEeeCCCCcccccccChhhccccCceEEecCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 3322210 00 0001111111 11000 1001 11122333334443332 36788888888877
Q ss_pred HHHhhhhhhcccc-ccccc---cccccccchHHHHHHHHHHcCCHHHHHHhhhc
Q 002872 279 YNRVQNVIKKYSI-ERHWQ---TLNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 328 (872)
Q Consensus 279 ~~~~~~~~~~~~~-~~~~~---~l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F 328 (872)
.+.-+..-...+. ..... -...| +..+-+|||+.|||++||+.+...
T Consensus 226 ~~~~g~y~~~~~~~~g~Y~s~s~y~DE---l~WAAawLY~ATgd~~Yl~~a~~~ 276 (525)
T PLN02420 226 DKYRGKYDESLKVVKSYYASVSGYMDE---LLWGATWLYRATDNEHYMSYVVDM 276 (525)
T ss_pred HhcCCccCCCCcccCCCCCCcCcccHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 6421110000000 00000 01122 346788999999999999988654
No 59
>PLN02171 endoglucanase
Probab=53.65 E-value=1.3e+02 Score=37.32 Aligned_cols=124 Identities=9% Similarity=0.000 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCcceecC-Cc-----hhhhhhhhcCCCccccc----------hHHHHHHHHHHHHHHc
Q 002872 199 ESLKEKMSAVVSALSACQKEIGSGYLSAF-PT-----EQFDRLEALIPVWAPYY----------TIHKILAGLLDQYTYA 262 (872)
Q Consensus 199 ~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~-~~-----~~f~~~~~l~~~W~pyy----------~~HkI~aGLld~y~~t 262 (872)
+.+.+.+..-.|.|.+||. ++|-|-.- .. ..+.+=|+.... -|.| .--..-|+|-++++.-
T Consensus 116 ~~~Ldeikw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~-R~~y~i~~~~pgSd~a~e~AAAlAaaS~vf 192 (629)
T PLN02171 116 GHAMDAVKWGTDYFIKAHP--EPNVLYGEVGDGDTDHYCWQRPEDMTTD-RQAYRIDPQNPGSDLAGETAAAMAAASIVF 192 (629)
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCccccCcCChhHcccc-ceeEEecCCCCchHHHHHHHHHHHHHHHhc
Confidence 5677888889999999997 44322110 00 001111111100 0111 1122334444445543
Q ss_pred CC------hhHHHHHHHHHHHHHHHhhhhhhcccc-cccccc---ccccccchHHHHHHHHHHcCCHHHHHHhhhc
Q 002872 263 DN------AEALRMTTWMVEYFYNRVQNVIKKYSI-ERHWQT---LNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 328 (872)
Q Consensus 263 G~------~~aL~va~~~ad~~~~~~~~~~~~~~~-~~~~~~---l~~E~GGmneaL~~LY~~TGd~ryL~lA~~F 328 (872)
.+ ++.|+-|+++-+|..+.-+..-...+. ...... ...| +..+-+|||+.|||++||+.+...
T Consensus 193 k~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s~s~y~DE---l~WAAawLy~ATgd~~Yl~~~~~~ 265 (629)
T PLN02171 193 RRSNPGYANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRSVSGYGDE---LLWAAAWLYQATNNQYYLDYLGNN 265 (629)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCCCCCccHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 32 467888888888886531110000000 001100 0122 335778999999999999987654
No 60
>PLN03009 cellulase
Probab=51.30 E-value=2.4e+02 Score=33.97 Aligned_cols=164 Identities=13% Similarity=0.042 Sum_probs=80.6
Q ss_pred hHHHhcCCCCCC-----CCCCCCCCCCcCcccchhhHH-HHHHHHHHHh-------cCChHHHHHHHHHHHHHHHHHhhc
Q 002872 153 NFRKTARLPAPG-----EPYGGWEEPSCELRGHFVGHY-LSASALMWAS-------THNESLKEKMSAVVSALSACQKEI 219 (872)
Q Consensus 153 nFR~~AGl~~~g-----~~ygGWE~~~~~l~Gh~~Ghy-LsA~A~~~a~-------t~D~~L~~k~d~~Vd~L~~~Q~~~ 219 (872)
.+|..+++. +| .--|||-+.+=.++=.+++.| +..++..+.. .+-+.+.+.+..-+|.|.+||.
T Consensus 55 ~Wr~ds~~~-Dg~~~~~DlsGGwyDAGD~~Ky~~p~a~s~~~L~w~~~~f~d~~~~~~~~diLdeikw~~D~llkm~~-- 131 (495)
T PLN03009 55 TWRANSGLS-DGWTHNTDLTGGYYDAGDNVKFGFPMAFTTTMLAWSVIEFGDLMPSSELRNSLVAIRWATDYLLKTVS-- 131 (495)
T ss_pred CCcccCcCC-CCCcccccCCCcceeCCCCceeccchHHHHHHHHHHHHHhHhhCCccccHHHHHHHHHHHHHHHHccc--
Confidence 467666664 22 234788654322332233333 1122222221 2346788888889999999987
Q ss_pred CCcceec-CCch-----hhhhhhhcCCCccccch----------HHHHHHHHHHHHHHcCC------hhHHHHHHHHHHH
Q 002872 220 GSGYLSA-FPTE-----QFDRLEALIPVWAPYYT----------IHKILAGLLDQYTYADN------AEALRMTTWMVEY 277 (872)
Q Consensus 220 ~dGYL~a-~~~~-----~f~~~~~l~~~W~pyy~----------~HkI~aGLld~y~~tG~------~~aL~va~~~ad~ 277 (872)
.+|-+-. .... .|.+=|+... --|.|. ....-|.|-.+++.-.+ ++.|+-|+++-+|
T Consensus 132 ~~~~~y~qVg~~~~Dh~~W~~Pe~~~~-~R~~~~is~~~p~sd~a~~~AAalA~as~vfk~~D~~YA~~ll~~Ak~ly~~ 210 (495)
T PLN03009 132 QPNRIFVQVGDPIADHNCWERPEDMDT-PRTVYAVNAPNPASDVAGETAAALAASSMAFRSSDPGYSETLLRNAIKTFQF 210 (495)
T ss_pred CcCeEEEEeCCCCCCcccCcChhhcCC-CCeEEEecCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 4443321 0000 0111111110 011221 13344444445554432 3578888888888
Q ss_pred HHHHhhhhhhcccccc--------cccc---ccccccchHHHHHHHHHHcCCHHHHHHhhh
Q 002872 278 FYNRVQNVIKKYSIER--------HWQT---LNEEAGGMNDVLYKLFCITQDPKHLMLAHL 327 (872)
Q Consensus 278 ~~~~~~~~~~~~~~~~--------~~~~---l~~E~GGmneaL~~LY~~TGd~ryL~lA~~ 327 (872)
..+.-+. +.... .... ...| +..+-+|||+.|||++||+-++.
T Consensus 211 a~~~~g~----y~~~~~~~~g~~~~Y~~~s~~~DE---~~WAAawLy~aTgd~~Yl~~~~~ 264 (495)
T PLN03009 211 ADMYRGA----YSDNDDIKDGVCPFYCDFDGYQDE---LLWGAAWLRRASGDDSYLNYIEN 264 (495)
T ss_pred HHHcCCC----ccCCccccCccccCcCCcccccHH---HHHHHHHHHHHhCCHHHHHHHHH
Confidence 8653211 11100 0000 1122 33577899999999999998754
No 61
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=51.01 E-value=1.2e+02 Score=34.46 Aligned_cols=144 Identities=16% Similarity=0.332 Sum_probs=79.0
Q ss_pred CCCCCCCCCcCcccchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCcccc
Q 002872 166 PYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPY 245 (872)
Q Consensus 166 ~ygGWE~~~~~l~Gh~~GhyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~py 245 (872)
.-|.|.+-++-+ |--.--|-|-+-.+|...+|..+.++.+.--+.|.+- ++--|- |-. -..|-|-
T Consensus 235 hsgdw~rkdsgi-gagidsyyey~lkayillgddsfldrfn~hydai~ry--------i~k~pi--~ld----vhihkp~ 299 (587)
T KOG2430|consen 235 HSGDWTRKDSGI-GAGIDSYYEYLLKAYILLGDDSFLDRFNKHYDAIKRY--------INKGPI--FLD----VHIHKPM 299 (587)
T ss_pred ccCcceecccCc-CcchHHHHHHHHHHhheeccHHHHHHHHHHHHHHHHH--------hcCCCe--EEE----Eecccch
Confidence 446688776655 3334456677778889999999999998888887643 322220 000 0122232
Q ss_pred chHHHHHHHHHHHH----HHcCChhHHHHHHHHHHHHHHHhhh--hh-hcc--ccccccc--cccccccchHHHHHHHHH
Q 002872 246 YTIHKILAGLLDQY----TYADNAEALRMTTWMVEYFYNRVQN--VI-KKY--SIERHWQ--TLNEEAGGMNDVLYKLFC 314 (872)
Q Consensus 246 y~~HkI~aGLld~y----~~tG~~~aL~va~~~ad~~~~~~~~--~~-~~~--~~~~~~~--~l~~E~GGmneaL~~LY~ 314 (872)
-+..-.|.+|++.+ ...|+-+ -+..|..-+...+++ .+ +.. +.+-||. ++..|+ .|+-+-||+
T Consensus 300 l~ar~~mdallaf~pglqvlkgdik---~aie~heml~qvikkh~flpeaft~df~vhwaehpirpef---aestyflyk 373 (587)
T KOG2430|consen 300 LAARGFMDALLAFFPGLQVLKGDIK---EAIEMHEMLFQVIKKHKFLPEAFTHDFQVHWAEHPIRPEF---AESTYFLYK 373 (587)
T ss_pred hhHhhHHHHHHHhCcchhhhccccH---HHHHHHHHHHHHHHHcccChHhhcccceeecccCCCChhh---hhhheeeec
Confidence 22222344444321 1233321 122333333222211 01 111 2344564 466674 588899999
Q ss_pred HcCCHHHHHHhhhccc
Q 002872 315 ITQDPKHLMLAHLFDK 330 (872)
Q Consensus 315 ~TGd~ryL~lA~~F~~ 330 (872)
.||||-||+.|+.+.+
T Consensus 374 at~dp~yl~v~k~iid 389 (587)
T KOG2430|consen 374 ATGDPHYLEVAKQIID 389 (587)
T ss_pred ccCCchHHHHHHHHHH
Confidence 9999999999998743
No 62
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=49.93 E-value=54 Score=38.97 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccccchHHHHHHHHHHHHHH
Q 002872 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTY 261 (872)
Q Consensus 182 ~GhyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y~~ 261 (872)
..+||=+.+.+|+.++|++|.+.+..|.... +=|=|+..+... .+++.-...-.|| ++.++++.|++
T Consensus 386 ~~~yll~~vra~~~s~D~~Lw~~~~~m~~~~-------gLGdig~~~~~~-~~~~~~~~~~sp~-----~L~allEL~~a 452 (557)
T PF06917_consen 386 DPDYLLPYVRAYRLSRDPELWDLARTMAHHF-------GLGDIGNAAGKE-PRVNMQTDNASPY-----LLFALLELYQA 452 (557)
T ss_dssp -HHHHHHHHHHHHHS--HHHHHHHHHHHHHT-------T-EE-TTBTTBS--EE-TT-----HH-----HHHHHHHHHHH
T ss_pred chhHhHHHHHHHHcCCCHHHHHHHHHHHhhc-------CcccccCccccc-cccccCCCCCCHH-----HHHHHHHHHHH
Confidence 5789999999999999999988777766532 445555443210 0111112233355 34567899999
Q ss_pred cCChhHHHHHHHHHHHHHHH
Q 002872 262 ADNAEALRMTTWMVEYFYNR 281 (872)
Q Consensus 262 tG~~~aL~va~~~ad~~~~~ 281 (872)
|++++.|+.|.++++-+.++
T Consensus 453 tq~~~~l~lA~~~g~~l~~~ 472 (557)
T PF06917_consen 453 TQDARYLELADQVGENLFEQ 472 (557)
T ss_dssp H--HHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999988653
No 63
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=48.78 E-value=35 Score=38.05 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=58.1
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHhccCeeeecCCCCCCCCCCCcccccCCCCCcccccchHHHHHHHHHHhcccCCc--
Q 002872 359 SQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEI-- 436 (872)
Q Consensus 359 ~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~Y~TGG~g~~E~f~~p~~L~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~-- 436 (872)
.++.|..|+|++|++++.+..+.+.. --|..||.-.. |-......+.+ +---=+.++.|.+.+....-.++-
T Consensus 48 La~~y~~t~d~~y~~A~~kgl~ylL~-aQypnGGWPQ~--yP~~~~Y~~~I---TfNDdam~~vl~lL~~v~~~~~~~~~ 121 (289)
T PF09492_consen 48 LARVYQATKDPRYREAFLKGLDYLLK-AQYPNGGWPQF--YPLRGGYHDHI---TFNDDAMVNVLELLRDVAEGKGDFAF 121 (289)
T ss_dssp HHHHHHHCG-HHHHHHHHHHHHHHHH-HS-TTS--BSE--CS--SGGGGSE---E-GGGHHHHHHHHHHHHHCT-TTSTT
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHH-hhCCCCCCCcc--CCCCCCCCCce---EEccHHHHHHHHHHHHHHhhcCCccc
Confidence 67889999999999999999999884 67889988652 11111111111 111124678888888888888887
Q ss_pred -------hhHHHHHHHHhhhhcccCC
Q 002872 437 -------AYADYYERSLTNGVLGIQR 455 (872)
Q Consensus 437 -------~YaD~~ERaLyN~iLa~q~ 455 (872)
++.+-++|.+ ..||..|-
T Consensus 122 v~~~~~~r~~~A~~kgi-~ciL~tQi 146 (289)
T PF09492_consen 122 VDESLRARARAAVDKGI-DCILKTQI 146 (289)
T ss_dssp S-HHHHHHHHHHHHHHH-HHHHHHS-
T ss_pred cCHHHHHHHHHHHHHHH-HHHHHHHc
Confidence 8888888877 66777653
No 64
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=48.10 E-value=1.2e+02 Score=35.89 Aligned_cols=132 Identities=15% Similarity=0.131 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecC-CchhhhhhhhcCCCccccchHHHHHHHHHHHHHHcC
Q 002872 185 YLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAF-PTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYAD 263 (872)
Q Consensus 185 yLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~-~~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y~~tG 263 (872)
.+++.+.+| ..+|.+| +.+.++.+...|. ++|.+... |... ....--|-|.++-|+ .+.++|+.+|
T Consensus 155 ~~~~~~~~~-~~~~~~l---~~~~l~~~~~~q~--~~G~~p~~~P~~~------~~~~~~~~w~l~~i~-~~~~~y~~tG 221 (509)
T PF05592_consen 155 RVSALTAYY-SFGDAAL---YRKWLRDFADSQR--PDGLLPSVAPSYG------GGGFGIPDWSLAWII-IPWDYYLYTG 221 (509)
T ss_dssp HHHHHHHHC-CT--HHH---HHHHHHHHHGGTT--TSTT-SSBSS---------SSGGGBHHHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHH-hCCcHHH---HHHHHHHHHHhhc--ccCCceEEecccC------CCCCCCccHHHHHHH-HHHHHHHHhC
Confidence 345544443 4456554 6677888888999 89987653 3211 011122445555454 4679999999
Q ss_pred ChhHHH----HHHHHHHHHHHHhhh---hhhccccccccc---ccccccc----------chHHHHHHHHHHcCCH----
Q 002872 264 NAEALR----MTTWMVEYFYNRVQN---VIKKYSIERHWQ---TLNEEAG----------GMNDVLYKLFCITQDP---- 319 (872)
Q Consensus 264 ~~~aL~----va~~~ad~~~~~~~~---~~~~~~~~~~~~---~l~~E~G----------GmneaL~~LY~~TGd~---- 319 (872)
|.+.++ .++++.+|+.+...+ .+.....-.|.. ......+ .....+++|.+..|++
T Consensus 222 D~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DW~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~ 301 (509)
T PF05592_consen 222 DREFLEEYYPAMKRYLDYLERRVDDGLDGLPGWGFGDWLAPGNDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAA 301 (509)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTB-TSSB-CCSB--S-SS----TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCccccCCCCCceeecCCccCcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 987655 677888888765543 111111111110 0001001 1124678899999985
Q ss_pred HHHHHhhhcc
Q 002872 320 KHLMLAHLFD 329 (872)
Q Consensus 320 ryL~lA~~F~ 329 (872)
+|.++|+.+.
T Consensus 302 ~y~~~a~~lk 311 (509)
T PF05592_consen 302 EYRARAERLK 311 (509)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888887763
No 65
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=47.21 E-value=16 Score=33.62 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecC
Q 002872 186 LSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAF 227 (872)
Q Consensus 186 LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~ 227 (872)
..+++.++...+++...+.+++-++.|.++|. +||-++..
T Consensus 29 t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~--~dG~w~~~ 68 (109)
T PF13243_consen 29 TAALILALAAAGDAAVDEAIKKAIDWLLSHQN--PDGGWGYS 68 (109)
T ss_dssp ------------TS-SSBSSHHHHHHHHH-----TTS--S-T
T ss_pred cccccccccccCCCCcHHHHHHHHHHHHHhcC--CCCCCCCc
Confidence 34455666677888999999999999999999 99965543
No 66
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=47.12 E-value=67 Score=36.30 Aligned_cols=109 Identities=18% Similarity=0.090 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHHHH-Hhh--hhhhcccccccccccccccc--chHHHHHHHHHHcCCHHHHHHhhhc----ccccccc
Q 002872 265 AEALRMTTWMVEYFYN-RVQ--NVIKKYSIERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLF----DKPCFLG 335 (872)
Q Consensus 265 ~~aL~va~~~ad~~~~-~~~--~~~~~~~~~~~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~lA~~F----~~~~~~~ 335 (872)
++.++.+++-.||+.+ +|. +.+...+. +--...|--+| |+...|++.|++-++++||+-|..- .+..++-
T Consensus 241 ~~~~~dVK~sldym~~~rfpsGNyP~s~~~-~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlLk 319 (403)
T KOG2787|consen 241 PALLKDVKGSLDYMIQNRFPSGNYPSSEGN-KRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLLK 319 (403)
T ss_pred hhHHHhhhhHHHHHHHccCCCCCCCcccCC-CcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 4467889999999975 332 11111111 10111222355 8999999999999999999877654 2222221
Q ss_pred hhhccCCCCCCCcccCCcch--hhHHHHHHHHhCChHHHHHHHHHHHHHhc
Q 002872 336 LLALQADDISGFHSNTHIPI--VIGSQMRYEVTGDQLHKTISMFFMDIVNS 384 (872)
Q Consensus 336 ~l~~~~D~l~g~HanthiP~--~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~ 384 (872)
. +. | -.|..- ..-..-+|++|||.+|+--|..|.....+
T Consensus 320 k---g~----G---ichGvaGNaYvFLsLyRLT~d~kYlyRA~kFae~lld 360 (403)
T KOG2787|consen 320 K---GV----G---ICHGVAGNAYVFLSLYRLTGDMKYLYRAKKFAEWLLD 360 (403)
T ss_pred c---CC----c---ccccccCchhhhHhHHHHcCcHHHHHHHHHHHHHHHh
Confidence 1 10 0 111111 11246789999999999999999999875
No 67
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=38.53 E-value=56 Score=30.86 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=27.5
Q ss_pred CcEEEECCeecCCCCCCCEEEEEeecCCCCEEEEEecceeEEEecC
Q 002872 579 GAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQ 624 (872)
Q Consensus 579 ~~~v~VNG~~~~~~~~ggY~~I~R~Wk~GD~I~L~LPm~lr~~~~~ 624 (872)
+=+|.|||+.+... ..=+.||+|+|.|.-......+.
T Consensus 33 ~GrV~vNG~~aKpS---------~~VK~GD~l~i~~~~~~~~v~Vl 69 (100)
T COG1188 33 GGRVKVNGQRAKPS---------KEVKVGDILTIRFGNKEFTVKVL 69 (100)
T ss_pred CCeEEECCEEcccc---------cccCCCCEEEEEeCCcEEEEEEE
Confidence 45899999987532 23378999999998877776543
No 68
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=37.67 E-value=2.3e+02 Score=31.83 Aligned_cols=88 Identities=16% Similarity=0.097 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccccch---HHHHHHHHHHHHHHc
Q 002872 186 LSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYT---IHKILAGLLDQYTYA 262 (872)
Q Consensus 186 LsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~pyy~---~HkI~aGLld~y~~t 262 (872)
|.=++.+|..++|+..++.+.+-|+.|+++|- ++|=...|... ...=..+-++.. +| +|.-|.+.+..-
T Consensus 50 ~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQy--pnGGWPQf~p~-----~~~Y~~~ITfND~am~~-vl~lL~~i~~~~ 121 (290)
T TIGR02474 50 IRYLAQVYQQEKNAKYRDAARKGIEYLLKAQY--PNGGWPQFYPL-----KGGYSDAITYNDNAMVN-VLTLLDDIANGK 121 (290)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHhhhC--CCCCcCcccCC-----cCCcccccccCcHHHHH-HHHHHHHHHhcc
Confidence 45578889999999999999999999999999 66432222110 000001112211 22 333344545433
Q ss_pred C---------ChhHHHHHHHHHHHHHHH
Q 002872 263 D---------NAEALRMTTWMVEYFYNR 281 (872)
Q Consensus 263 G---------~~~aL~va~~~ad~~~~~ 281 (872)
+ .+++...+.|-.+||.+.
T Consensus 122 ~~~~~~~~~~~~r~~~Ai~Rgid~ILkt 149 (290)
T TIGR02474 122 DPFDVFPDSTRTRAKTAVTKGIECILKT 149 (290)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 2 257888888888888653
No 69
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=35.76 E-value=23 Score=34.45 Aligned_cols=25 Identities=16% Similarity=0.386 Sum_probs=19.4
Q ss_pred cccchhhHHHHHHHHHHHHhhcccc
Q 002872 3 KWMCSIGFFKFLLTFLLIVSAAQAK 27 (872)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (872)
||...++|++++|++|++|.|...|
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888888888776554
No 70
>PHA02651 IL-1 receptor antagonist; Provisional
Probab=33.77 E-value=29 Score=35.49 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=21.0
Q ss_pred CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 002872 783 RTVSLESETYKGCFVYTAVNLQSSESTKLG 812 (872)
Q Consensus 783 g~vsles~~~pg~~~~~~~~~~~g~~~~l~ 812 (872)
.+.+|||+.+||||+.... -.....|.|.
T Consensus 115 ~tstFESaafPgWfIsTs~-~e~~~PV~Lt 143 (165)
T PHA02651 115 HTSTFESVAFPGWFLCTSS-GDGIEPVGLT 143 (165)
T ss_pred CceEEEecCCCCcEEEecc-ccCCcceEee
Confidence 4999999999999997531 1112567776
No 71
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=32.13 E-value=1.2e+02 Score=27.58 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=35.3
Q ss_pred HHHH--HHHHHHHHhhcCCcceecCCchhhhhhhhcCCCccccchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 002872 205 MSAV--VSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYN 280 (872)
Q Consensus 205 ~d~~--Vd~L~~~Q~~~~dGYL~a~~~~~f~~~~~l~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~ 280 (872)
.+++ ++.|.++|. +||-++..+... -...++ ...+| ......|.+...+.+.+..+|+.+
T Consensus 42 ~~~~~~~~~L~~~q~--~dGg~~~~~~~~----------~~~~~~---t~~~l-~~l~~~~~~~~~~~~~~a~~~l~~ 103 (113)
T PF13249_consen 42 RDRAAAVEWLLSQQN--PDGGWGSNPDGG----------PPDVYT---TYVAL-AALELLGRPDDEEAVRKAVDWLLS 103 (113)
T ss_dssp HHHHHHHHHHHHHB---TTSGBBSSTTTT-----------BSHHH---HHHHH-HHHHHHT-GGCHTTHCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCCCccCCCCCC----------CccHHH---HHHHH-HHHHHcCCCcccHHHHHHHHHHHH
Confidence 5556 999999999 999888765310 001111 12223 233455655556788888999865
No 72
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=29.25 E-value=2e+02 Score=32.16 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCC-cceecCCchhhhhhhhcCCCccccch-----HHHHHHHHHH
Q 002872 184 HYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGS-GYLSAFPTEQFDRLEALIPVWAPYYT-----IHKILAGLLD 257 (872)
Q Consensus 184 hyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~d-GYL~a~~~~~f~~~~~l~~~W~pyy~-----~HkI~aGLld 257 (872)
.=|.-+|.+|..|+|+++++-+.+-|+.|+++|- ++ ||=--||.. .....+.| +=-+|.=|.+
T Consensus 43 ~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQy--pnGGWPQ~yP~~---------~~Y~~~ITfNDdam~~vl~lL~~ 111 (289)
T PF09492_consen 43 TEIRFLARVYQATKDPRYREAFLKGLDYLLKAQY--PNGGWPQFYPLR---------GGYHDHITFNDDAMVNVLELLRD 111 (289)
T ss_dssp HHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS---TTS--BSECS-----------SGGGGSEE-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhC--CCCCCCccCCCC---------CCCCCceEEccHHHHHHHHHHHH
Confidence 3456689999999999999999999999999999 54 443333321 00111110 1112333456
Q ss_pred HHHHcCCh---------hHHHHHHHHHHHHHHHh
Q 002872 258 QYTYADNA---------EALRMTTWMVEYFYNRV 282 (872)
Q Consensus 258 ~y~~tG~~---------~aL~va~~~ad~~~~~~ 282 (872)
.+...++- ++.+.+.|-.|+|.+..
T Consensus 112 v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQ 145 (289)
T PF09492_consen 112 VAEGKGDFAFVDESLRARARAAVDKGIDCILKTQ 145 (289)
T ss_dssp HHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666 89999999999997653
No 73
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=28.27 E-value=57 Score=34.42 Aligned_cols=51 Identities=24% Similarity=0.467 Sum_probs=37.0
Q ss_pred EEeccCCccCC-------CcEEEECCeecCCCCCCCEEEE-EeecCCCCEEEEEecceeEEE-ecCC
Q 002872 568 NLRIPTWTSSN-------GAKATLNGQDLPLPSPGNFLSV-TKTWSSDDKLTIQLPLTLRTE-AIQD 625 (872)
Q Consensus 568 ~LRIP~Wa~~~-------~~~v~VNG~~~~~~~~ggY~~I-~R~Wk~GD~I~L~LPm~lr~~-~~~d 625 (872)
-+|||+|-..+ -+.++|||. .|.+.+ +|+-.+.|.|+|-=|+.+|-+ .++|
T Consensus 145 gi~Iegf~~~~RtfG~v~~yp~~Ingi-------~gaiV~P~rT~h~~dviEIIapv~LR~~LnLkD 204 (214)
T COG1339 145 GIRIEGFKTEDRTFGGVKAYPCKINGI-------EGAIVIPERTHHPTDVIEIIAPVKLRDELNLKD 204 (214)
T ss_pred CEeeCCCCCCCceeccEEEEEEEEcCc-------ceEEEeeccccCCcceEEEEccHhHHHHhCCCC
Confidence 47999997531 267889983 235555 588888999999999999864 4544
No 74
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=27.52 E-value=3.1e+02 Score=24.69 Aligned_cols=21 Identities=19% Similarity=0.567 Sum_probs=16.9
Q ss_pred eEEEEeccCCccCCCcEEEECCeecC
Q 002872 565 TSLNLRIPTWTSSNGAKATLNGQDLP 590 (872)
Q Consensus 565 ftL~LRIP~Wa~~~~~~v~VNG~~~~ 590 (872)
.+|.|.+| . +++|+|||++.+
T Consensus 3 a~itv~vP---a--dAkl~v~G~~t~ 23 (75)
T TIGR03000 3 ATITVTLP---A--DAKLKVDGKETN 23 (75)
T ss_pred eEEEEEeC---C--CCEEEECCeEcc
Confidence 37888889 2 689999999865
No 75
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=27.20 E-value=5.3e+02 Score=31.51 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=26.5
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHhhcCCcceecC
Q 002872 194 ASTHNESLKEKMSAVVSALSACQKEIGSGYLSAF 227 (872)
Q Consensus 194 a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~ 227 (872)
..++||.+.+|+..+.+.|.+.-. ++|-..-|
T Consensus 344 ~ltg~P~~~ekv~~IRk~l~k~ek--P~GLypnY 375 (625)
T KOG2204|consen 344 KLTGNPTFAEKVVKIRKVLNKSEK--PHGLYPNY 375 (625)
T ss_pred hccCCchHHHHHHHHHHHHHhhcC--CCCCCccc
Confidence 468999999999999999999988 87744333
No 76
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=26.76 E-value=5.9e+02 Score=28.20 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHhhcCCcceecCC
Q 002872 183 GHYLSASALMWAST--HNESLKEKMSAVVSALSACQKEIGSGYLSAFP 228 (872)
Q Consensus 183 GhyLsA~A~~~a~t--~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~ 228 (872)
+--+.+++.+.... ++....+.++..++.|.++|. +||-+..+.
T Consensus 95 a~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~--~dG~f~~~~ 140 (348)
T cd02889 95 AEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQN--SNGGFAAFE 140 (348)
T ss_pred HHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhcc--CCCCEeeec
Confidence 34445554443333 246788899999999999999 899887664
No 77
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=26.40 E-value=1.3e+02 Score=28.00 Aligned_cols=51 Identities=18% Similarity=0.463 Sum_probs=31.7
Q ss_pred EEEECCeecCCCCCCCEEEEEeecCCCCEEEEEec-ceeEEE-----ecCCCcccccCeEEEeecceeee
Q 002872 581 KATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLP-LTLRTE-----AIQDDRPEYASIQAILYGPYVLA 644 (872)
Q Consensus 581 ~v~VNG~~~~~~~~ggY~~I~R~Wk~GD~I~L~LP-m~lr~~-----~~~d~~~~~~~~vAv~rGPlVlA 644 (872)
.++|||+... ..++..+.++ +||.|+|+-. -..|+. +++. --+.|||+|+.
T Consensus 30 ~~~v~~~~~~-~~~~~~~~l~----~g~~i~~~a~~~~a~~lll~GePl~E--------pi~~~GpFVmn 86 (104)
T PF05726_consen 30 SVEVGGEEDP-LEAGQLVVLE----DGDEIELTAGEEGARFLLLGGEPLNE--------PIVQYGPFVMN 86 (104)
T ss_dssp EEEETTTTEE-EETTEEEEE-----SECEEEEEESSSSEEEEEEEE----S----------EEETTEEES
T ss_pred cEEECCCcce-ECCCcEEEEC----CCceEEEEECCCCcEEEEEEccCCCC--------CEEEECCcccC
Confidence 4667776511 1256677776 8999999998 666663 3322 24789999986
No 78
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=25.01 E-value=2.6e+02 Score=34.64 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=59.6
Q ss_pred CCCCCCCC-------CcCcccchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceecCCchh-hhhhhh
Q 002872 166 PYGGWEEP-------SCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQ-FDRLEA 237 (872)
Q Consensus 166 ~ygGWE~~-------~~~l~Gh~~GhyLsA~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~-f~~~~~ 237 (872)
+.|||-+. |+| -+..-|.|+... ....++...+.+++-|+.|...|. .||.+++|.... ..-++.
T Consensus 364 ~~GGW~f~~~~~~~pd~d----dTa~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~~Qn--~dGgw~af~~~~~~~~l~~ 436 (635)
T TIGR01507 364 EPGGWAFQFDNVYYPDVD----DTAVVVWALNGL-RLPDERRRRDAMTKAFRWIAGMQS--SNGGWGAFDVDNTSDLLNH 436 (635)
T ss_pred CCCccCCCCCCCCCCCch----hHHHHHHHHHHc-CCCccccchHHHHHHHHHHHHhcC--CCCCEecccCCcchhHHhc
Confidence 45788764 222 145566666543 222456777899999999999999 999998874211 000111
Q ss_pred c--------CCCccccchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 002872 238 L--------IPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNR 281 (872)
Q Consensus 238 l--------~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~ 281 (872)
+ .+.--+-+|.+-|++ +...|.+..-+.+.+-.+|+.+.
T Consensus 437 ~~f~d~~~~~D~~~~d~Ta~~l~a-----l~~~g~~~~~~~i~rav~~L~~~ 483 (635)
T TIGR01507 437 IPFCDFGAVTDPPTADVTARVLEC-----LGSFGYDDAWPVIERAVEYLKRE 483 (635)
T ss_pred CCccccccccCCCCccHHHHHHHH-----HHHhCCCchhHHHHHHHHHHHHc
Confidence 1 111112245554442 23334443356788888998653
No 79
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=24.57 E-value=5.5e+02 Score=31.60 Aligned_cols=124 Identities=10% Similarity=0.114 Sum_probs=64.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcceec-CC-chhhhhhhhcCCCccccc--hHHHHHHHHHHHHHHcCC
Q 002872 189 SALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSA-FP-TEQFDRLEALIPVWAPYY--TIHKILAGLLDQYTYADN 264 (872)
Q Consensus 189 ~A~~~a~t~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a-~~-~~~f~~~~~l~~~W~pyy--~~HkI~aGLld~y~~tG~ 264 (872)
.++++...|++ +.+.+.++.|.+.|. +||++-. +. .....-+ .|..-. ++.-|. ++..+++.+|+
T Consensus 303 ~a~Al~~~G~~---~~a~~~l~~l~~~q~--~~G~~~~~~~~dG~~~~~-----~~~~Q~D~~g~~l~-al~~y~~~t~d 371 (616)
T TIGR01577 303 IATALDRAGYH---DRVDRFFRWAMQTQS--RDGSWQQRYYLNGRLAPL-----QWGLQIDETGSILW-AMDQHYRLTND 371 (616)
T ss_pred HHHHHHHCCCH---HHHHHHHHHHHHhhC--cCCCcceEEecCCCCCCC-----CCCccccchhHHHH-HHHHHHHHHCC
Confidence 34444556665 445666888999999 8887411 10 0000000 011100 111222 45567788998
Q ss_pred hhH----HHHHHHHHHHHHHHhhhhhhccccccccccccccccc-------hH----HHHHHHHHHcCCH----HHHHHh
Q 002872 265 AEA----LRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGG-------MN----DVLYKLFCITQDP----KHLMLA 325 (872)
Q Consensus 265 ~~a----L~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GG-------mn----eaL~~LY~~TGd~----ryL~lA 325 (872)
... .+.+++.++|+.+.....++ .+....|. |++| |. ...++|.+..|++ +|.+.|
T Consensus 372 ~~~~~~~~~~v~~a~~fl~~~~~~~l~-~~~~~lWE----er~G~~~~t~a~~~aAL~~aa~lA~~lGd~~~a~~~~~~A 446 (616)
T TIGR01577 372 RAFLEEIWESVQKAAQYLILFIDPETP-LPCRDLWE----EREGVFTYTASAVYGGLDAAAAVADKLGEKRLAQNWKKAA 446 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCC-CCCCccce----ecCCccCccHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 654 45788999998765422111 12222332 2222 21 4566788888885 566777
Q ss_pred hhc
Q 002872 326 HLF 328 (872)
Q Consensus 326 ~~F 328 (872)
+.+
T Consensus 447 d~i 449 (616)
T TIGR01577 447 EFI 449 (616)
T ss_pred HHH
Confidence 665
No 80
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=23.85 E-value=2.5e+02 Score=34.76 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcCCcceecCCchhh-hhhhhcC------CC-c---cccchHHHHHHHHHHHHHHcCCh
Q 002872 197 HNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQF-DRLEALI------PV-W---APYYTIHKILAGLLDQYTYADNA 265 (872)
Q Consensus 197 ~D~~L~~k~d~~Vd~L~~~Q~~~~dGYL~a~~~~~f-~~~~~l~------~~-W---~pyy~~HkI~aGLld~y~~tG~~ 265 (872)
+++...++++..|+.|.+.|. +||-.++|....- .-++.++ +. . .+-+|.|-|+ +|. .+.. ..+
T Consensus 382 ~~~~~~~~l~~a~~~Ll~~Qn--~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~-aL~-~~~~-r~~ 456 (621)
T TIGR01787 382 DEHVKRDRLRDAVNWILGMQS--SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQ-ALG-AFGH-RAD 456 (621)
T ss_pred cccccHHHHHHHHHHHHHHcC--CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHH-HHH-HhcC-ccH
Confidence 466777889999999999999 9998888752110 0011110 11 1 1236777665 343 2221 113
Q ss_pred hHHHHHHHHHHHHHHH
Q 002872 266 EALRMTTWMVEYFYNR 281 (872)
Q Consensus 266 ~aL~va~~~ad~~~~~ 281 (872)
...+.+.+..+|+.+.
T Consensus 457 ~~~~~i~rAl~~L~~~ 472 (621)
T TIGR01787 457 EIRNVLERALEYLRRE 472 (621)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 3457889999999754
No 81
>cd00100 IL1 Interleukin-1 homologes; Cytokines with various biological functions. Interleukin 1 alpha and beta are also known as hematopoietin and catabolin. This family also contains interleukin-1 receptor antagonists (inhibitors).
Probab=22.90 E-value=50 Score=33.14 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=20.9
Q ss_pred CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 002872 783 RTVSLESETYKGCFVYTAVNLQSSESTKLG 812 (872)
Q Consensus 783 g~vsles~~~pg~~~~~~~~~~~g~~~~l~ 812 (872)
.+.+|||+.+||||+-.. ......|.|.
T Consensus 103 ~~~~FeSaa~PgWfIsTs--~~~~~PV~l~ 130 (144)
T cd00100 103 NKNYFESAAFPNWFIATK--QEEDKPVFLA 130 (144)
T ss_pred CceEEEEccCCCcEEEec--ccCCeEEEee
Confidence 389999999999999753 1234566665
No 82
>PF00340 IL1: Interleukin-1 / 18; InterPro: IPR000975 Interleukin-1 alpha and interleukin-1 beta (IL-1 alpha and IL-1 beta) are cytokines that participate in the regulation of immune responses, inflammatory reactions, and hematopoiesis []. Two types of IL-1 receptor, each with three extracellular immunoglobulin (Ig)-like domains, limited sequence similarity (28%) and different pharmacological characteristics have been cloned from mouse and human cell lines: these have been termed type I and type II receptors []. The receptors both exist in transmembrane (TM) and soluble forms: the soluble IL-1 receptor is thought to be post-translationally derived from cleavage of the extracellular portion of the membrane receptors. Both IL-1 receptors appear to be well conserved in evolution, and map to the same chromosomal location []. The receptors can both bind all three forms of IL-1 (IL-1 alpha, IL-1 beta and IL-1RA). The crystal structures of IL1A and IL1B [] have been solved, showing them to share the same 12-stranded beta-sheet structure as both the heparin binding growth factors and the Kunitz-type soybean trypsin inhibitors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Several regions, especially the loop between strands 4 and 5, have been implicated in receptor binding. The Vaccinia virus genes B15R and B18R each encode proteins with N-terminal hydrophobic sequences, possible sites for attachment of N-linked carbohydrate and a short C-terminal hydrophobic domain []. These properties are consistent with the mature proteins being either virion, cell surface or secretory glycoproteins. Protein sequence comparisons reveal that the gene products are related to each other (20% identity) and to the Ig superfamily. The highest degree of similarity is to the human and murine interleukin-1 receptors, although both proteins are related to a wide range of Ig superfamily members, including the interleukin-6 receptor. A novel method for virus immune evasion has been proposed in which the product of one or both of these proteins may bind interleukin-1 and/or interleukin-6, preventing these cytokines reaching their natural receptors []. A similar gene product from Cowpox virus (CPV) has also been shown to specifically bind murine IL-1 beta []. This entry represents Interleukin-1. ; GO: 0005615 extracellular space; PDB: 1J0S_A 3F62_B 2VXT_I 1MD6_A 2KKI_A 2L5X_D 2WRY_A 3NJ5_A 8I1B_A 2MIB_A ....
Probab=22.35 E-value=67 Score=31.13 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=20.5
Q ss_pred eEEEeecCCcceEEEEeeccCCCCcEEEEe
Q 002872 784 TVSLESETYKGCFVYTAVNLQSSESTKLGC 813 (872)
Q Consensus 784 ~vsles~~~pg~~~~~~~~~~~g~~~~l~~ 813 (872)
+-+|||+.+|||||... ...+..|.|.+
T Consensus 80 ~~~FESaa~PgwFIaT~--~~~~~pv~l~~ 107 (120)
T PF00340_consen 80 TSTFESAAYPGWFIATS--PEDNQPVELTK 107 (120)
T ss_dssp EEEEEESSSTTEEEEBE--SSSTEEEEEES
T ss_pred ceEEEEccCCCeEEEec--ccCCceEEEEe
Confidence 44599999999999754 23455677764
No 83
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=21.50 E-value=4.5e+02 Score=23.91 Aligned_cols=43 Identities=9% Similarity=0.110 Sum_probs=32.5
Q ss_pred CCCCceEEEeeccCCCCCeEEEeecCCcceEEEEe-eccCCCCcEEEE
Q 002872 766 AQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTA-VNLQSSESTKLG 812 (872)
Q Consensus 766 ~~~~s~f~~vpgl~g~~g~vsles~~~pg~~~~~~-~~~~~g~~~~l~ 812 (872)
.....+|+|+| .| +|++.|.+. ..|..|-.. .+...|+.|.+-
T Consensus 48 ~~~~Q~W~i~~--~~-~g~y~I~n~-~s~~~Ldv~~~~~~~g~~v~~~ 91 (105)
T PF14200_consen 48 GNDNQQWKIEP--VG-DGYYRIRNK-NSGKVLDVAGGSTANGTNVQQW 91 (105)
T ss_dssp SSGGGEEEEEE--ST-TSEEEEEET-STTEEEEEGGGSSSTTEBEEEE
T ss_pred CCcCcEEEEEE--ec-CCeEEEEEC-CCCcEEEECCCCCCCCCEEEEE
Confidence 36779999998 45 589999999 668888643 444567788775
No 84
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=21.30 E-value=5.5e+02 Score=22.37 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=17.4
Q ss_pred eeeEEEEeccCCccCCCcEEEECCeecCCC
Q 002872 563 LTTSLNLRIPTWTSSNGAKATLNGQDLPLP 592 (872)
Q Consensus 563 ~~ftL~LRIP~Wa~~~~~~v~VNG~~~~~~ 592 (872)
.++.|.+--|+ +.+|++||++++..
T Consensus 38 ~~~~i~iGna~-----~v~v~~nG~~~~~~ 62 (77)
T PF13464_consen 38 EPFRIRIGNAG-----AVEVTVNGKPVDLL 62 (77)
T ss_pred CCEEEEEeCCC-----cEEEEECCEECCCC
Confidence 44555554443 68999999999863
No 85
>smart00125 IL1 Interleukin-1 homologues. Cytokines with various biological functions. Interluekin 1 alpha and beta are also known as hematopoietin and catabolin.
Probab=20.81 E-value=60 Score=32.71 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=20.5
Q ss_pred CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 002872 783 RTVSLESETYKGCFVYTAVNLQSSESTKLG 812 (872)
Q Consensus 783 g~vsles~~~pg~~~~~~~~~~~g~~~~l~ 812 (872)
.+.+|||+.+||||+.... .....|.|.
T Consensus 106 ~~~~FeSaa~PgWfIsTs~--~~~~PV~l~ 133 (147)
T smart00125 106 NKVEFESAAHPNWFISTSQ--EEDKPVFLG 133 (147)
T ss_pred CceEEEEccCCCcEEEecc--ccCceEEee
Confidence 4899999999999997531 234456665
Done!