Query 002873
Match_columns 872
No_of_seqs 805 out of 3263
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 12:31:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 1.3E-73 2.9E-78 634.7 25.7 512 133-848 2-520 (549)
2 PF04059 RRM_2: RNA recognitio 100.0 9.5E-46 2.1E-50 336.8 11.1 97 712-808 1-97 (97)
3 KOG0110 RNA-binding protein (R 100.0 1.8E-34 3.8E-39 328.7 12.1 349 26-419 246-663 (725)
4 TIGR01628 PABP-1234 polyadenyl 100.0 2.6E-28 5.7E-33 288.7 24.2 296 25-360 41-370 (562)
5 TIGR01628 PABP-1234 polyadenyl 100.0 4.7E-28 1E-32 286.6 20.1 286 101-418 5-333 (562)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.3E-27 7.2E-32 262.7 21.7 236 101-356 8-351 (352)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.5E-26 9.8E-31 264.9 27.9 305 25-354 37-480 (481)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 7.5E-27 1.6E-31 259.9 19.9 156 193-352 2-169 (352)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.4E-26 5.2E-31 267.2 24.6 272 101-382 7-420 (481)
10 TIGR01659 sex-lethal sex-letha 99.9 1.8E-26 3.8E-31 256.7 20.3 164 189-356 102-277 (346)
11 TIGR01648 hnRNP-R-Q heterogene 99.9 1.1E-24 2.4E-29 254.2 20.2 229 101-356 63-309 (578)
12 KOG0148 Apoptosis-promoting RN 99.9 1.7E-24 3.7E-29 223.8 16.8 163 194-357 62-241 (321)
13 TIGR01645 half-pint poly-U bin 99.9 2.9E-24 6.2E-29 251.1 19.6 163 193-355 106-285 (612)
14 KOG0144 RNA-binding protein CU 99.9 2.6E-23 5.7E-28 226.0 25.0 164 192-358 32-210 (510)
15 KOG0117 Heterogeneous nuclear 99.9 4.9E-24 1.1E-28 232.7 13.1 164 192-358 162-335 (506)
16 TIGR01648 hnRNP-R-Q heterogene 99.9 5.1E-23 1.1E-27 240.3 21.6 219 149-382 18-261 (578)
17 KOG0145 RNA-binding protein EL 99.9 5.3E-23 1.1E-27 211.2 16.6 235 101-354 45-358 (360)
18 TIGR01622 SF-CC1 splicing fact 99.9 9.9E-23 2.2E-27 235.0 19.4 162 190-352 85-264 (457)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.3E-22 1.6E-26 230.7 24.2 251 101-353 180-501 (509)
20 KOG0117 Heterogeneous nuclear 99.9 3.8E-22 8.2E-27 218.0 19.4 181 192-382 81-285 (506)
21 TIGR01622 SF-CC1 splicing fact 99.9 6.4E-22 1.4E-26 228.3 21.2 242 101-353 94-447 (457)
22 KOG0145 RNA-binding protein EL 99.9 1.5E-22 3.1E-27 208.0 13.2 159 191-353 38-208 (360)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.3E-22 1.6E-26 230.7 20.3 164 189-354 170-375 (509)
24 KOG0127 Nucleolar protein fibr 99.9 3.9E-21 8.4E-26 213.8 17.8 166 194-359 117-383 (678)
25 KOG0109 RNA-binding protein LA 99.8 3.9E-21 8.4E-26 200.7 10.8 150 195-356 3-152 (346)
26 KOG0131 Splicing factor 3b, su 99.8 2.3E-20 4.9E-25 184.1 11.9 163 192-357 7-180 (203)
27 KOG0123 Polyadenylate-binding 99.8 9.7E-20 2.1E-24 204.1 17.2 262 124-417 17-317 (369)
28 KOG0123 Polyadenylate-binding 99.8 6.3E-20 1.4E-24 205.6 15.3 289 25-359 36-354 (369)
29 KOG0127 Nucleolar protein fibr 99.8 1.4E-19 3E-24 201.6 15.5 162 195-356 6-198 (678)
30 KOG0144 RNA-binding protein CU 99.8 1.2E-18 2.6E-23 190.0 12.2 234 117-356 46-506 (510)
31 KOG0110 RNA-binding protein (R 99.8 1.9E-18 4.1E-23 198.4 12.4 162 195-356 516-695 (725)
32 TIGR01645 half-pint poly-U bin 99.7 1E-16 2.2E-21 188.1 24.3 157 101-267 112-282 (612)
33 KOG0148 Apoptosis-promoting RN 99.7 6.1E-18 1.3E-22 175.5 11.7 161 192-382 4-190 (321)
34 KOG0124 Polypyrimidine tract-b 99.7 1.1E-17 2.3E-22 178.7 10.4 157 194-352 113-288 (544)
35 KOG0146 RNA-binding protein ET 99.7 3E-17 6.6E-22 169.6 10.7 166 193-358 18-369 (371)
36 KOG4206 Spliceosomal protein s 99.7 2E-16 4.4E-21 161.8 15.5 162 191-352 6-220 (221)
37 KOG0105 Alternative splicing f 99.6 2.1E-15 4.6E-20 149.1 12.7 149 192-342 4-176 (241)
38 KOG4205 RNA-binding protein mu 99.6 6.4E-16 1.4E-20 168.5 9.6 163 193-357 5-179 (311)
39 KOG0147 Transcriptional coacti 99.6 2.7E-16 5.9E-21 176.8 6.4 164 189-353 174-357 (549)
40 KOG4212 RNA-binding protein hn 99.6 1.5E-12 3.3E-17 142.5 31.7 159 193-351 43-291 (608)
41 KOG0147 Transcriptional coacti 99.5 6.8E-14 1.5E-18 157.7 13.5 161 192-352 276-526 (549)
42 TIGR01659 sex-lethal sex-letha 99.5 6.6E-14 1.4E-18 156.4 10.6 106 277-382 105-219 (346)
43 KOG0106 Alternative splicing f 99.5 6.3E-14 1.4E-18 144.9 6.5 148 195-348 2-165 (216)
44 KOG1457 RNA binding protein (c 99.4 7.5E-13 1.6E-17 134.6 12.2 149 193-341 33-273 (284)
45 PLN03134 glycine-rich RNA-bind 99.4 6E-13 1.3E-17 131.2 10.0 79 278-356 33-116 (144)
46 PLN03134 glycine-rich RNA-bind 99.4 1.7E-12 3.7E-17 128.0 12.3 81 191-271 31-116 (144)
47 KOG1548 Transcription elongati 99.4 1.6E-11 3.4E-16 132.1 16.9 165 191-355 131-353 (382)
48 KOG1190 Polypyrimidine tract-b 99.4 1.4E-11 3.1E-16 134.5 16.8 160 194-353 297-490 (492)
49 KOG1190 Polypyrimidine tract-b 99.3 8.8E-12 1.9E-16 136.1 13.2 165 192-356 148-375 (492)
50 KOG0124 Polypyrimidine tract-b 99.3 3E-11 6.5E-16 129.9 13.5 160 101-265 118-286 (544)
51 PF00076 RRM_1: RNA recognitio 99.3 8.2E-12 1.8E-16 105.8 6.8 66 282-347 1-70 (70)
52 PF00076 RRM_1: RNA recognitio 99.2 2.5E-11 5.5E-16 102.8 8.1 66 197-262 1-70 (70)
53 KOG0107 Alternative splicing f 99.2 2.1E-11 4.5E-16 120.5 7.2 77 193-269 9-85 (195)
54 KOG0107 Alternative splicing f 99.2 2.1E-11 4.6E-16 120.5 6.3 77 279-355 10-86 (195)
55 COG0724 RNA-binding proteins ( 99.2 1.7E-10 3.6E-15 120.4 12.6 119 194-312 115-258 (306)
56 KOG0125 Ataxin 2-binding prote 99.2 5.2E-11 1.1E-15 127.3 8.2 77 278-354 95-174 (376)
57 KOG4212 RNA-binding protein hn 99.2 6.5E-10 1.4E-14 122.2 16.8 70 280-351 537-608 (608)
58 KOG4211 Splicing factor hnRNP- 99.2 2.2E-10 4.7E-15 128.3 13.1 157 194-353 10-181 (510)
59 KOG0131 Splicing factor 3b, su 99.1 7.9E-11 1.7E-15 117.1 7.9 129 278-418 8-146 (203)
60 KOG0121 Nuclear cap-binding pr 99.1 6.6E-11 1.4E-15 111.5 6.5 76 191-266 33-113 (153)
61 KOG0121 Nuclear cap-binding pr 99.1 7.9E-11 1.7E-15 111.0 6.5 81 278-358 35-120 (153)
62 KOG0120 Splicing factor U2AF, 99.1 2.7E-10 5.8E-15 130.5 11.9 165 190-354 285-492 (500)
63 KOG0109 RNA-binding protein LA 99.1 6E-11 1.3E-15 125.1 5.9 99 281-382 4-104 (346)
64 KOG0114 Predicted RNA-binding 99.1 2.3E-10 5.1E-15 104.2 8.4 79 191-269 15-95 (124)
65 KOG0122 Translation initiation 99.1 3E-10 6.5E-15 117.6 10.2 80 190-269 185-269 (270)
66 KOG0114 Predicted RNA-binding 99.1 4.5E-10 9.8E-15 102.4 10.0 100 278-381 17-118 (124)
67 PLN03120 nucleic acid binding 99.1 2.3E-10 5E-15 121.5 8.9 74 279-353 4-79 (260)
68 KOG0122 Translation initiation 99.1 2E-10 4.3E-15 118.9 8.1 77 278-354 188-269 (270)
69 PLN03120 nucleic acid binding 99.1 4.2E-10 9E-15 119.6 10.6 75 194-269 4-80 (260)
70 KOG4660 Protein Mei2, essentia 99.1 1.4E-10 3.1E-15 131.6 6.3 163 190-355 71-251 (549)
71 PF14259 RRM_6: RNA recognitio 99.1 4.8E-10 1E-14 96.0 7.7 66 282-347 1-70 (70)
72 smart00362 RRM_2 RNA recogniti 99.1 6E-10 1.3E-14 93.0 8.2 69 281-349 1-72 (72)
73 KOG0125 Ataxin 2-binding prote 99.0 4.9E-10 1.1E-14 120.0 9.3 79 191-269 93-174 (376)
74 PF14259 RRM_6: RNA recognitio 99.0 7E-10 1.5E-14 94.9 7.9 66 197-262 1-70 (70)
75 PLN03213 repressor of silencin 99.0 6.6E-10 1.4E-14 123.5 8.9 118 192-312 8-136 (759)
76 KOG4207 Predicted splicing fac 99.0 2.4E-10 5.3E-15 115.5 5.0 76 279-354 13-93 (256)
77 PF13893 RRM_5: RNA recognitio 99.0 1.1E-09 2.4E-14 90.1 8.0 56 296-351 1-56 (56)
78 KOG1456 Heterogeneous nuclear 99.0 3.3E-09 7.1E-14 115.0 13.5 173 184-357 21-202 (494)
79 PLN03213 repressor of silencin 99.0 5.9E-10 1.3E-14 123.9 7.5 78 277-354 8-88 (759)
80 smart00362 RRM_2 RNA recogniti 99.0 1.8E-09 4E-14 90.1 8.5 69 196-264 1-72 (72)
81 KOG4207 Predicted splicing fac 99.0 7.6E-10 1.6E-14 111.9 6.8 79 189-267 8-91 (256)
82 KOG0113 U1 small nuclear ribon 99.0 1.5E-09 3.3E-14 115.0 9.3 78 190-267 97-179 (335)
83 KOG0113 U1 small nuclear ribon 99.0 1.5E-09 3.2E-14 115.2 9.0 90 266-355 88-182 (335)
84 KOG0149 Predicted RNA-binding 99.0 6.5E-10 1.4E-14 114.8 5.6 80 276-356 9-93 (247)
85 KOG0105 Alternative splicing f 98.9 9.5E-10 2.1E-14 109.5 5.8 78 278-355 5-84 (241)
86 cd00590 RRM RRM (RNA recogniti 98.9 4.8E-09 1E-13 88.0 8.6 70 281-350 1-74 (74)
87 PLN03121 nucleic acid binding 98.9 3.6E-09 7.9E-14 110.9 9.1 73 279-352 5-79 (243)
88 KOG0149 Predicted RNA-binding 98.9 2.4E-09 5.2E-14 110.6 7.0 77 190-267 8-89 (247)
89 PLN03121 nucleic acid binding 98.9 5.2E-09 1.1E-13 109.7 9.6 73 194-267 5-79 (243)
90 PF13893 RRM_5: RNA recognitio 98.9 6.2E-09 1.3E-13 85.7 7.5 56 211-266 1-56 (56)
91 smart00360 RRM RNA recognition 98.9 5.2E-09 1.1E-13 86.9 7.2 66 284-349 1-71 (71)
92 KOG0111 Cyclophilin-type pepti 98.9 1.3E-09 2.8E-14 110.9 4.1 81 278-358 9-94 (298)
93 cd00590 RRM RRM (RNA recogniti 98.9 1.1E-08 2.3E-13 85.9 8.7 70 196-265 1-74 (74)
94 KOG1456 Heterogeneous nuclear 98.9 1.1E-07 2.3E-12 103.5 18.3 164 190-353 116-362 (494)
95 smart00360 RRM RNA recognition 98.8 1.1E-08 2.3E-13 85.0 7.6 66 199-264 1-71 (71)
96 COG0724 RNA-binding proteins ( 98.8 1.1E-08 2.4E-13 106.6 8.8 75 279-353 115-194 (306)
97 KOG0111 Cyclophilin-type pepti 98.8 5.5E-09 1.2E-13 106.5 4.8 80 192-271 8-92 (298)
98 KOG0129 Predicted RNA-binding 98.8 8.6E-08 1.9E-12 108.6 14.2 143 190-335 255-432 (520)
99 KOG0130 RNA-binding protein RB 98.7 1.2E-08 2.5E-13 97.3 5.5 78 276-353 69-151 (170)
100 KOG0108 mRNA cleavage and poly 98.7 2.5E-08 5.3E-13 113.9 7.4 79 280-358 19-102 (435)
101 KOG0108 mRNA cleavage and poly 98.7 3.3E-08 7E-13 113.0 7.6 76 195-270 19-99 (435)
102 smart00361 RRM_1 RNA recogniti 98.6 6.9E-08 1.5E-12 83.5 7.0 57 293-349 2-70 (70)
103 KOG0126 Predicted RNA-binding 98.6 9.5E-09 2.1E-13 102.4 1.5 75 278-352 34-113 (219)
104 KOG4206 Spliceosomal protein s 98.6 5E-08 1.1E-12 100.8 6.7 77 280-356 10-92 (221)
105 KOG0112 Large RNA-binding prot 98.6 1.7E-08 3.7E-13 119.7 3.7 160 190-356 368-533 (975)
106 KOG1365 RNA-binding protein Fu 98.6 1.5E-07 3.1E-12 102.8 10.2 210 141-353 103-361 (508)
107 KOG0126 Predicted RNA-binding 98.6 6.4E-09 1.4E-13 103.5 -0.4 76 192-267 33-113 (219)
108 KOG0130 RNA-binding protein RB 98.6 6.8E-08 1.5E-12 92.1 6.3 78 192-269 70-152 (170)
109 KOG4205 RNA-binding protein mu 98.6 1.8E-07 4E-12 102.8 9.7 79 193-272 96-179 (311)
110 KOG0120 Splicing factor U2AF, 98.6 1.1E-07 2.4E-12 109.4 8.2 168 189-358 170-373 (500)
111 KOG0132 RNA polymerase II C-te 98.6 1E-07 2.3E-12 111.6 8.1 75 194-269 421-495 (894)
112 KOG0153 Predicted RNA-binding 98.5 3.5E-07 7.6E-12 99.2 8.3 82 186-268 220-302 (377)
113 smart00361 RRM_1 RNA recogniti 98.4 4.9E-07 1.1E-11 78.2 6.8 56 208-263 2-69 (70)
114 KOG0153 Predicted RNA-binding 98.4 4.8E-07 1E-11 98.2 7.3 78 275-353 224-302 (377)
115 KOG0128 RNA-binding protein SA 98.4 4.9E-08 1.1E-12 115.6 -0.3 141 192-353 665-814 (881)
116 KOG4454 RNA binding protein (R 98.4 1.4E-07 3E-12 96.6 2.0 133 192-342 7-151 (267)
117 KOG0132 RNA polymerase II C-te 98.4 7.6E-07 1.6E-11 104.6 7.9 80 278-358 420-499 (894)
118 KOG0415 Predicted peptidyl pro 98.3 5.9E-07 1.3E-11 97.3 5.8 78 278-355 238-320 (479)
119 KOG0146 RNA-binding protein ET 98.3 7.3E-07 1.6E-11 93.5 6.2 81 191-271 282-367 (371)
120 KOG4210 Nuclear localization s 98.3 6.1E-07 1.3E-11 98.1 5.8 165 192-357 86-267 (285)
121 KOG4211 Splicing factor hnRNP- 98.3 1.6E-05 3.4E-10 90.1 16.9 206 140-349 49-353 (510)
122 KOG4208 Nucleolar RNA-binding 98.2 4.8E-06 1E-10 85.1 8.4 81 189-269 44-130 (214)
123 KOG0415 Predicted peptidyl pro 98.2 2E-06 4.4E-11 93.2 6.0 79 190-268 235-318 (479)
124 KOG0226 RNA-binding proteins [ 98.2 8.8E-07 1.9E-11 92.7 3.1 159 197-355 99-271 (290)
125 KOG4208 Nucleolar RNA-binding 98.2 4E-06 8.7E-11 85.7 7.5 78 277-354 47-130 (214)
126 PF03467 Smg4_UPF3: Smg-4/UPF3 98.1 2.2E-06 4.7E-11 87.6 4.4 90 710-799 5-99 (176)
127 KOG1457 RNA binding protein (c 98.0 1E-05 2.2E-10 83.4 7.4 80 279-358 34-122 (284)
128 KOG0106 Alternative splicing f 98.0 3.7E-06 8.1E-11 87.7 4.3 99 281-382 3-125 (216)
129 KOG4661 Hsp27-ERE-TATA-binding 97.9 1.1E-05 2.5E-10 91.7 6.1 74 280-353 406-484 (940)
130 KOG0533 RRM motif-containing p 97.9 3.3E-05 7.2E-10 82.2 8.2 78 191-268 80-161 (243)
131 KOG4661 Hsp27-ERE-TATA-binding 97.9 3.5E-05 7.6E-10 87.8 8.7 76 192-267 403-483 (940)
132 KOG0151 Predicted splicing reg 97.8 3.6E-05 7.7E-10 90.1 7.5 83 186-268 166-256 (877)
133 KOG2193 IGF-II mRNA-binding pr 97.8 2.3E-06 4.9E-11 94.6 -2.8 149 195-352 2-155 (584)
134 KOG0116 RasGAP SH3 binding pro 97.7 3.4E-05 7.3E-10 88.2 5.8 76 280-356 289-369 (419)
135 KOG0533 RRM motif-containing p 97.7 8E-05 1.7E-09 79.4 7.5 77 278-354 82-162 (243)
136 KOG0116 RasGAP SH3 binding pro 97.7 5.2E-05 1.1E-09 86.6 6.5 75 192-267 286-365 (419)
137 KOG1365 RNA-binding protein Fu 97.7 0.00041 8.8E-09 76.5 12.2 154 193-348 59-237 (508)
138 KOG0151 Predicted splicing reg 97.6 6.2E-05 1.3E-09 88.1 5.9 79 276-354 171-257 (877)
139 KOG4676 Splicing factor, argin 97.6 3.3E-05 7.2E-10 85.1 2.3 158 195-354 8-226 (479)
140 KOG4307 RNA binding protein RB 97.6 0.00012 2.7E-09 85.4 6.9 166 189-355 306-515 (944)
141 KOG4209 Splicing factor RNPS1, 97.6 9.7E-05 2.1E-09 78.6 5.7 78 276-354 98-180 (231)
142 PF11608 Limkain-b1: Limkain b 97.4 0.00049 1.1E-08 61.4 7.6 68 195-267 3-75 (90)
143 KOG1548 Transcription elongati 97.4 0.00025 5.4E-09 77.5 6.5 74 279-352 134-219 (382)
144 PF04059 RRM_2: RNA recognitio 97.4 0.00086 1.9E-08 62.0 8.6 73 195-267 2-85 (97)
145 KOG4209 Splicing factor RNPS1, 97.3 0.00024 5.1E-09 75.7 5.2 78 189-267 96-178 (231)
146 PF11608 Limkain-b1: Limkain b 97.3 0.00067 1.5E-08 60.6 6.4 69 280-353 3-76 (90)
147 KOG4454 RNA binding protein (R 97.2 0.00017 3.7E-09 74.5 2.5 75 278-353 8-86 (267)
148 KOG0128 RNA-binding protein SA 97.2 0.00012 2.6E-09 87.6 1.1 178 193-384 570-764 (881)
149 KOG0226 RNA-binding proteins [ 97.2 0.00083 1.8E-08 70.9 7.0 77 191-267 187-268 (290)
150 PF08777 RRM_3: RNA binding mo 97.2 0.0007 1.5E-08 63.6 5.8 71 281-352 3-78 (105)
151 KOG4210 Nuclear localization s 96.8 0.0033 7.2E-08 69.1 7.9 164 101-270 93-265 (285)
152 KOG1855 Predicted RNA-binding 96.7 0.0019 4E-08 72.6 4.9 141 110-255 138-310 (484)
153 COG5175 MOT2 Transcriptional r 96.7 0.0048 1E-07 67.3 7.7 76 279-354 114-203 (480)
154 KOG2193 IGF-II mRNA-binding pr 96.5 0.0032 6.9E-08 70.4 5.2 101 280-383 2-107 (584)
155 PF08777 RRM_3: RNA binding mo 96.5 0.0076 1.6E-07 56.6 6.9 59 195-254 2-60 (105)
156 KOG1295 Nonsense-mediated deca 96.3 0.0022 4.8E-08 71.5 2.8 74 710-784 5-80 (376)
157 KOG1855 Predicted RNA-binding 96.3 0.005 1.1E-07 69.2 5.1 67 273-339 225-309 (484)
158 COG5175 MOT2 Transcriptional r 96.2 0.0085 1.8E-07 65.4 6.0 75 193-267 113-201 (480)
159 PF14605 Nup35_RRM_2: Nup53/35 96.1 0.013 2.8E-07 48.3 5.6 52 195-248 2-53 (53)
160 KOG0115 RNA-binding protein p5 96.1 0.01 2.2E-07 63.1 6.2 87 242-339 5-95 (275)
161 PF14605 Nup35_RRM_2: Nup53/35 96.0 0.013 2.7E-07 48.3 4.9 52 280-333 2-53 (53)
162 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.021 4.6E-07 53.2 6.9 73 278-352 5-90 (100)
163 KOG4307 RNA binding protein RB 95.8 0.024 5.2E-07 67.0 8.2 72 194-265 867-943 (944)
164 KOG1995 Conserved Zn-finger pr 95.6 0.0089 1.9E-07 66.2 3.5 79 278-356 65-156 (351)
165 KOG3152 TBP-binding protein, a 95.6 0.0088 1.9E-07 63.5 3.1 69 192-260 72-157 (278)
166 KOG3152 TBP-binding protein, a 95.4 0.0066 1.4E-07 64.4 1.3 68 278-345 73-157 (278)
167 KOG2314 Translation initiation 95.4 0.028 6E-07 65.3 6.3 74 277-350 56-140 (698)
168 PF05172 Nup35_RRM: Nup53/35/4 95.3 0.037 8E-07 51.6 6.0 72 193-266 5-89 (100)
169 PF07576 BRAP2: BRCA1-associat 95.2 0.15 3.2E-06 48.5 9.8 85 711-798 11-96 (110)
170 KOG1995 Conserved Zn-finger pr 95.2 0.018 3.8E-07 63.9 3.9 77 191-267 63-152 (351)
171 PF08952 DUF1866: Domain of un 95.1 0.055 1.2E-06 53.6 6.8 74 278-355 26-108 (146)
172 KOG0112 Large RNA-binding prot 94.9 0.01 2.2E-07 72.0 1.4 106 277-382 370-481 (975)
173 KOG2202 U2 snRNP splicing fact 94.8 0.012 2.6E-07 62.6 1.5 60 294-353 83-147 (260)
174 KOG0804 Cytoplasmic Zn-finger 94.8 0.092 2E-06 59.9 8.3 81 712-796 74-154 (493)
175 KOG0129 Predicted RNA-binding 94.2 0.47 1E-05 55.1 12.4 149 101-250 264-432 (520)
176 KOG2314 Translation initiation 94.2 0.1 2.2E-06 60.8 6.9 73 192-264 56-139 (698)
177 KOG1996 mRNA splicing factor [ 94.0 0.093 2E-06 56.8 5.8 60 293-352 300-365 (378)
178 KOG2202 U2 snRNP splicing fact 93.1 0.05 1.1E-06 58.0 2.1 58 210-267 84-146 (260)
179 PF15023 DUF4523: Protein of u 92.7 0.44 9.5E-06 47.0 7.6 75 189-266 81-159 (166)
180 KOG4849 mRNA cleavage factor I 91.7 0.17 3.6E-06 55.9 3.8 70 194-263 80-156 (498)
181 PF15023 DUF4523: Protein of u 91.3 0.61 1.3E-05 46.0 6.8 75 276-353 83-161 (166)
182 KOG2591 c-Mpl binding protein, 91.2 0.33 7.2E-06 56.6 5.8 72 191-264 172-247 (684)
183 PF08952 DUF1866: Domain of un 91.1 0.61 1.3E-05 46.3 6.8 74 192-269 25-107 (146)
184 KOG1996 mRNA splicing factor [ 90.9 0.41 8.9E-06 52.0 5.8 74 194-267 281-365 (378)
185 PF03467 Smg4_UPF3: Smg-4/UPF3 90.6 0.34 7.5E-06 49.7 4.8 77 192-268 5-97 (176)
186 KOG2416 Acinus (induces apopto 90.1 0.17 3.7E-06 59.4 2.3 76 278-354 443-522 (718)
187 PF08675 RNA_bind: RNA binding 89.8 1.4 3E-05 39.9 7.2 56 194-253 9-64 (87)
188 KOG4676 Splicing factor, argin 89.0 0.95 2.1E-05 51.0 6.9 71 280-351 8-86 (479)
189 PF04847 Calcipressin: Calcipr 89.0 0.61 1.3E-05 48.3 5.1 63 292-355 8-72 (184)
190 KOG4849 mRNA cleavage factor I 88.8 0.36 7.8E-06 53.4 3.4 72 280-351 81-159 (498)
191 KOG2591 c-Mpl binding protein, 88.1 0.86 1.9E-05 53.4 6.0 68 279-348 175-246 (684)
192 KOG2416 Acinus (induces apopto 87.9 0.46 1E-05 55.9 3.8 76 190-266 440-519 (718)
193 PF08675 RNA_bind: RNA binding 87.8 1.7 3.8E-05 39.2 6.4 54 280-337 10-63 (87)
194 PF10309 DUF2414: Protein of u 86.5 2 4.3E-05 36.7 5.9 54 279-336 5-62 (62)
195 KOG4285 Mitotic phosphoprotein 83.6 1.8 3.8E-05 47.6 5.3 63 194-259 197-259 (350)
196 PF10309 DUF2414: Protein of u 83.6 4.9 0.00011 34.4 6.9 53 194-251 5-62 (62)
197 KOG2068 MOT2 transcription fac 82.8 0.63 1.4E-05 51.7 1.6 77 279-355 77-164 (327)
198 KOG0115 RNA-binding protein p5 79.7 1.8 3.9E-05 46.5 3.7 60 195-254 32-95 (275)
199 KOG2135 Proteins containing th 79.7 1.1 2.4E-05 51.6 2.3 72 282-355 375-447 (526)
200 KOG4285 Mitotic phosphoprotein 79.2 3.1 6.7E-05 45.7 5.3 72 279-353 197-269 (350)
201 PF04847 Calcipressin: Calcipr 77.4 3.9 8.4E-05 42.4 5.2 61 207-268 8-70 (184)
202 KOG4574 RNA-binding protein (c 76.9 1.4 3.1E-05 53.9 2.1 74 281-355 300-375 (1007)
203 KOG2068 MOT2 transcription fac 76.6 1.3 2.8E-05 49.3 1.6 75 194-268 77-162 (327)
204 KOG2135 Proteins containing th 76.1 1.5 3.3E-05 50.6 2.0 77 191-269 369-446 (526)
205 PF07576 BRAP2: BRCA1-associat 72.6 25 0.00053 33.6 8.9 68 191-258 10-81 (110)
206 PF14111 DUF4283: Domain of un 72.5 4.5 9.7E-05 39.7 4.1 106 205-314 28-140 (153)
207 PF07292 NID: Nmi/IFP 35 domai 68.5 6.5 0.00014 36.0 3.9 68 234-301 1-74 (88)
208 KOG2253 U1 snRNP complex, subu 68.5 3 6.5E-05 50.1 2.1 69 278-350 39-107 (668)
209 PF03880 DbpA: DbpA RNA bindin 67.5 14 0.00031 32.2 5.8 58 290-351 12-74 (74)
210 KOG4574 RNA-binding protein (c 67.3 3.5 7.7E-05 50.7 2.4 73 196-269 300-374 (1007)
211 PF10567 Nab6_mRNP_bdg: RNA-re 59.6 91 0.002 34.7 11.1 146 191-337 12-212 (309)
212 PF11767 SET_assoc: Histone ly 57.1 39 0.00084 29.3 6.3 55 205-263 11-65 (66)
213 PF11767 SET_assoc: Histone ly 56.9 33 0.00072 29.8 5.9 55 290-348 11-65 (66)
214 KOG2253 U1 snRNP complex, subu 53.1 9.1 0.0002 46.2 2.5 70 192-265 38-107 (668)
215 KOG2318 Uncharacterized conser 52.8 50 0.0011 39.6 8.3 79 188-266 168-305 (650)
216 KOG4019 Calcineurin-mediated s 49.0 21 0.00046 36.8 4.0 75 281-356 12-92 (193)
217 KOG0804 Cytoplasmic Zn-finger 47.9 1E+02 0.0022 36.1 9.6 65 194-258 74-142 (493)
218 PF03880 DbpA: DbpA RNA bindin 46.7 77 0.0017 27.6 6.8 59 204-266 11-74 (74)
219 KOG2318 Uncharacterized conser 36.7 80 0.0017 38.0 6.7 73 278-350 173-304 (650)
220 KOG4483 Uncharacterized conser 31.3 54 0.0012 37.7 4.1 53 192-249 389-445 (528)
221 KOG4410 5-formyltetrahydrofola 31.0 75 0.0016 35.0 4.9 49 194-242 330-378 (396)
222 KOG2891 Surface glycoprotein [ 28.6 22 0.00048 38.7 0.5 62 195-256 150-247 (445)
223 KOG4019 Calcineurin-mediated s 26.7 55 0.0012 33.9 2.9 74 194-268 10-89 (193)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-73 Score=634.69 Aligned_cols=512 Identities=53% Similarity=0.770 Sum_probs=377.6
Q ss_pred cc-cccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHH
Q 002873 133 ED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLEL 211 (872)
Q Consensus 133 ee-dlf~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeL 211 (872)
++ ++|...|+++++.+.-..+.. + + ...+..+.+..++|..+ .++ +| .+|
T Consensus 2 ~d~~lf~~~G~~el~~~~~~~~~~---~---------~-----~~~n~~~~~~~~~P~~~--s~~-~~---------~~l 52 (549)
T KOG4660|consen 2 EDCDLFSSGGGMELDADSFDNLSV---R---------N-----SDRNSAGFVFPEHPPGE--SRT-FV---------SEL 52 (549)
T ss_pred CccccccCCCCCCcccccccchhh---c---------c-----cccCCCccccCCCCCCC--CCC-Ch---------hhH
Confidence 55 899999999886654333222 1 0 11244556778888877 666 77 788
Q ss_pred HHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCCCCccccccceeeeccCCcc
Q 002873 212 RSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASV 291 (872)
Q Consensus 212 r~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~~ 291 (872)
..+|++|+ +.+ +++.+.+++.++++|+|.|||.++
T Consensus 53 ~a~f~~~~----------------------------------~p~-----------~~~np~~~~~~~~~L~v~nl~~~V 87 (549)
T KOG4660|consen 53 SALFEPFN----------------------------------KPL-----------RPDNPSEKDMNQGTLVVFNLPRSV 87 (549)
T ss_pred HhhhhccC----------------------------------CCC-----------CcCCCCcccCccceEEEEecCCcC
Confidence 99999981 111 115667778899999999999999
Q ss_pred chhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcccchhhhcCChhccHH
Q 002873 292 SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARRNLMQQLNQELEQD 371 (872)
Q Consensus 292 TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r~~~~~ql~~~~tq~ 371 (872)
++++|+++|+.||+|+.|+.++..+|.+||+|.|+.+|++|+++|++.++.|++|+ +|++.++..+-+..
T Consensus 88 sn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~~~~------ 157 (549)
T KOG4660|consen 88 SNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGLQSG------ 157 (549)
T ss_pred CHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchhccc------
Confidence 99999999999999999999999999999999999999999999999999999998 77777776554443
Q ss_pred HHHHhhhccCCCCCCCCCCCccccCCCcccCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCcccC
Q 002873 372 EARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPINSNPLHAFSKSTGLATPTPVNSNHLPGLASIL 451 (872)
Q Consensus 372 ~l~~~f~~~Gsp~~~spp~~~s~~gsp~~~~~m~~~s~s~g~g~v~p~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~ 451 (872)
..+..++++|+++++|+.|. +...||.|.|....-+..+
T Consensus 158 --~~~~~~~~~p~a~s~pgg~~---------------~~~~~g~l~P~~s~~~~~~------------------------ 196 (549)
T KOG4660|consen 158 --TSFLNHFGSPLANSPPGGWP---------------RGQLFGMLSPTRSSILLEH------------------------ 196 (549)
T ss_pred --chhhhhccchhhcCCCCCCc---------------CCcceeeeccchhhhhhhc------------------------
Confidence 56778999999999999987 3455666776532111111
Q ss_pred CCCCCCCCcccCCCCcccccccccccccccccccccccccCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCC
Q 002873 452 PPHLSNTGKIAPIGKDQGRANQTNHMFSNSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSSGVGTLSGPQFLWG 531 (872)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 531 (872)
+++. -....+...+... ++.|.+ +. ..-+|.++|... |..+++..++.+++++--+|+
T Consensus 197 ---~~~~-~~~~~~~~~~~~~--hq~~~~--~~----~~~s~a~~~~~~----------G~~~s~~~~v~t~S~~~g~~n 254 (549)
T KOG4660|consen 197 ---ISSV-DGSSPGRETPLLN--HQRFVE--FA----DNRSYAFSEPRG----------GFLISNSSGVITFSGPGGVWN 254 (549)
T ss_pred ---chhc-cCccccccccchh--hhhhhh--hc----cccchhhcccCC----------ceecCCCCceEEecCCCcccC
Confidence 1110 0000011122222 233322 11 123446666521 666667778888888744441
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccccCCCCCCCCCcCCCCCCC
Q 002873 532 SPPPYSERSSSSAWPTSSVGHPFSSSGQGQGFPYGSRHGSFIGSHHQHHVGSAPSGVSLDRNFGFFPESPETSFTNPVPL 611 (872)
Q Consensus 532 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsap~~~~~~~~~~~~~~s~~~~~~~~~~~ 611 (872)
++.+..+ .-.....++|||||+||+..+ ....
T Consensus 255 ---------------------~~~~~r~---------~~~~~~~~~~~hi~~~Ps~~~------------------l~~~ 286 (549)
T KOG4660|consen 255 ---------------------PFPSRRQ---------RQNSSSSHYEHHIGSAPSMHH------------------LLSR 286 (549)
T ss_pred ---------------------Ccccccc---------ccccCcccccCccCCCccccc------------------cccc
Confidence 1211111 111223457899999997222 1122
Q ss_pred CCCCCCCCCCCcccccC--Cccc-cCCCCccCCCCCCCccccCCCCCCCcccCCCCCCCCCCCCCccc---ccccccccc
Q 002873 612 GGMGLSRNNAGYMMNVG--GRVG-VGLPLNVTDNGSPSLRMMSFPRHGPLFFGNGSYSGLGTTSNEAF---TERGRTRRV 685 (872)
Q Consensus 612 ~~~g~~~~~g~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~---~~r~r~rr~ 685 (872)
+++++.+..|++.++-. +..| ....+++++..+.++++.+.+++.. .|. ++. ...+..+.. .+..+.||.
T Consensus 287 ~~~~f~~~s~~~~~~~~~~~n~g~~~~t~~~~e~~s~n~~~e~~~rv~~-~f~-~~~--~~~~~~~~~~~~~~~~~~~Rt 362 (549)
T KOG4660|consen 287 ISVGFNGGSGALEMNSNGQANQGFLTKTGNVTEFNSKNVGMESSPRVPK-NFE-GRR--SYTSQNDYPVELILNYRDRRT 362 (549)
T ss_pred CccccCCCCCCccccccccCCCCccccCcccccccCCCccccccCCCCc-ccc-ccc--ccccccccccccccccccchh
Confidence 33444444444322211 1222 2356778888899999999999887 672 332 223334444 347777888
Q ss_pred ccCCCCcccccccccChhhhhcCCCcceeEEeecCCCCCCHHHHHHHHhhcCCceeeEEEeeecccccceeEEEEEeccC
Q 002873 686 ENCGSQVDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVS 765 (872)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~i~~g~d~rTTvMirNIPnk~t~~~L~~~id~~~~g~ydf~Ylp~df~~~~n~gyaFinf~~ 765 (872)
+....+.+ ++++.+|+.+|.+|++.|||+||||||||||++||++. ||.++|+|||+||||||+|+||||||||||++
T Consensus 363 t~~i~ni~-n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~s 440 (549)
T KOG4660|consen 363 TVMIKNIP-NKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNKCNVGYAFINMTS 440 (549)
T ss_pred hhhhhccc-cchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEeccccccccccceeEEeecC
Confidence 77665554 89999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCcccCCCCccEEEEEeeeccchHHHHHHhccCccccCCCCeeeeEEecCCCCCCcccccCCCCcccc
Q 002873 766 PSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAALVTHFQNSSLMNEDKRCRPIVFHSEGQETSDQEALLSSNLNIF 845 (872)
Q Consensus 766 ~~~~~~f~~~f~g~~w~~~~s~k~~~v~~A~iQG~~~l~~~~~~s~~~~~~~~~~P~~f~~~~~~~~~~~~~~~~~~~~~ 845 (872)
|++|++||++|||++|++|+|+|||+|+|||||||++|++|||||++|||++.|+|++|++ ++.|.+|++|... +++
T Consensus 441 p~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~p--p~dg~~~~~p~~~-~~~ 517 (549)
T KOG4660|consen 441 PEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSP--PEDGREEPEPVKL-NQD 517 (549)
T ss_pred HHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecC--cccccccCccccc-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999998 7899999999888 766
Q ss_pred ccC
Q 002873 846 IRQ 848 (872)
Q Consensus 846 ~~~ 848 (872)
.+.
T Consensus 518 a~~ 520 (549)
T KOG4660|consen 518 AGA 520 (549)
T ss_pred CCC
Confidence 443
No 2
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=9.5e-46 Score=336.76 Aligned_cols=97 Identities=66% Similarity=1.209 Sum_probs=96.4
Q ss_pred ceeEEeecCCCCCCHHHHHHHHhhcCCceeeEEEeeecccccceeEEEEEeccChhHHHHHHHHhcCCcccCCCCccEEE
Q 002873 712 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 791 (872)
Q Consensus 712 rTTvMirNIPnk~t~~~L~~~id~~~~g~ydf~Ylp~df~~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~s~k~~~ 791 (872)
|||||||||||||||+||+++||+.++|+||||||||||+++||+|||||||+++++|.+|++.|+|++|+.++|+|||+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccchHHHHHHhc
Q 002873 792 LAYARIQGQAALVTHFQ 808 (872)
Q Consensus 792 v~~A~iQG~~~l~~~~~ 808 (872)
|+||||||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999997
No 3
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=1.8e-34 Score=328.67 Aligned_cols=349 Identities=18% Similarity=0.220 Sum_probs=269.8
Q ss_pred cccccccccCCchhhHHHHhcCCcccccccCcccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCcccccc--ccC
Q 002873 26 KKVGSGAWGISFGTEANNASNDASLFSSSLPVLPHEKLNFADSEHHDQSVDDSSPTLNKIDLENESNGPLAGVET--IGS 103 (872)
Q Consensus 26 ~~~~~~tf~~p~~A~~a~~~~d~s~Fqgrl~hil~~k~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~k~~~e~e~--iwN 103 (872)
+.+++++|++|++||+||..+|+++|||||+||||.+.+.+.. .+.+...++||+ +++.+++...+. .||
T Consensus 246 ~lfa~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k~~~~----~~~~~~~~~~k~----~ke~~rk~~~~~~~~wn 317 (725)
T KOG0110|consen 246 KLFAFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEKSTAK----EDASELGSDYKK----EKELKRKAASASFHSWN 317 (725)
T ss_pred HhhHHHhhhhhHHHHhhhhhccccccccceeeecCcchhhhhh----hhHhhcCCcHHH----HHHhccccchhcceecc
Confidence 4569999999999999999999999999999999999876433 122223344776 677777775555 999
Q ss_pred CCCcchhHHHhhcccccccccCCCccccccccccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCCCCcc
Q 002873 104 LLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTV 183 (872)
Q Consensus 104 lLp~~~davls~vadel~l~klfsd~~dieedlf~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~~~~~ 183 (872)
+|++++++++..++.++++.+ +++.+.+ .+ |. .|..+..|++.....+-++.+.++.. ..+.
T Consensus 318 ~l~~~~~ava~~~a~k~~v~k--~~i~d~~--~~---gs-avr~al~etr~~~e~~~~~ee~gV~l----~~F~------ 379 (725)
T KOG0110|consen 318 TLFMGANAVAGILAQKLGVEK--SRILDGS--LS---GS-AVRLALGETRVVQEVRRFFEENGVKL----DAFS------ 379 (725)
T ss_pred cccccccHHHHHHHHHhCCee--eeeechh--hc---ch-HHHHHHHHhhhchhhhhhHHhhCccc----ccch------
Confidence 999999999999999999999 4444422 12 22 45567788888887777755553322 2222
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002873 184 AGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 184 ~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
..++..+.|+|+|||..+..++|..+|..||+|.++ +.++....|+|+|.++.+|++|++.|++..+...++++
T Consensus 380 -----~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rv-llp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyl 453 (725)
T KOG0110|consen 380 -----QAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRV-LLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYL 453 (725)
T ss_pred -----hhhhhcceeeeccCccccccHHHHHHhhccccccee-ecCcccceeeeeecCccchHHHHHHhchhhhccCcccc
Confidence 156788999999999999999999999999999999 44565567999999999999999999999999999999
Q ss_pred eecCCCC-------C-------------CCC------------cc-------------ccc-cceeeeccCCccchhhHh
Q 002873 264 HFSIPKD-------N-------------PSE------------KD-------------VNQ-GTLVVFNLDASVSNDDLR 297 (872)
Q Consensus 264 ~~a~pk~-------~-------------~~~------------~~-------------~~~-~tLfV~NLp~~~TeedL~ 297 (872)
.|+.... . +.+ ++ ..+ ++|||+||++++|.++|.
T Consensus 454 e~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~ 533 (725)
T KOG0110|consen 454 EWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLE 533 (725)
T ss_pred ccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHH
Confidence 9863110 0 000 00 011 249999999999999999
Q ss_pred hhhcccCCeEEEEeCC--------CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC--------CCcc-----
Q 002873 298 QIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR--------PGGA----- 356 (872)
Q Consensus 298 e~Fs~fG~V~~vri~~--------~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~--------p~~~----- 356 (872)
.+|.++|.|.++.|.. .++|||||+|.+.++|++|++.|+|+.|+||.|.|+++. ++..
T Consensus 534 ~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~ 613 (725)
T KOG0110|consen 534 DLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKG 613 (725)
T ss_pred HHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccccccccccccc
Confidence 9999999999997642 246999999999999999999999999999999999998 2111
Q ss_pred cchhhhcCChhccHHHHHHhhhccCCCCCCCCCCCccccCCCcccCCCCCCCCCCCCCCCCCC
Q 002873 357 RRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPI 419 (872)
Q Consensus 357 r~~~~~ql~~~~tq~~l~~~f~~~Gsp~~~spp~~~s~~gsp~~~~~m~~~s~s~g~g~v~p~ 419 (872)
.+-++++++++++..+++.+|..||.-..- .-|.. ...+..+||+|+.-.
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksv---------RlPKK----~~k~a~rGF~Fv~f~ 663 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSV---------RLPKK----IGKGAHRGFGFVDFL 663 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeee---------ccchh----hcchhhccceeeecc
Confidence 133789999999999999999999843222 12221 234446789887543
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=2.6e-28 Score=288.69 Aligned_cols=296 Identities=19% Similarity=0.232 Sum_probs=223.5
Q ss_pred CcccccccccCCchhhHHHHhcCCcccccccCcccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCcccccc--cc
Q 002873 25 PKKVGSGAWGISFGTEANNASNDASLFSSSLPVLPHEKLNFADSEHHDQSVDDSSPTLNKIDLENESNGPLAGVET--IG 102 (872)
Q Consensus 25 ~~~~~~~tf~~p~~A~~a~~~~d~s~Fqgrl~hil~~k~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~k~~~e~e~--iw 102 (872)
.++.|+++|..+++|.+|+..+++..|.|+-+.|...+... . .++..... +.
T Consensus 41 s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~---------------~-----------~~~~~~~~vfV~ 94 (562)
T TIGR01628 41 SLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP---------------S-----------LRRSGVGNIFVK 94 (562)
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc---------------c-----------ccccCCCceEEc
Confidence 56899999999999999999999998989888776533110 0 01111223 88
Q ss_pred CCCCcchhHHHhhcccccccccCCCccccccc-ccc-----CCCCcEEEEecChhhHHHhhhhhhcccCCcCCCcccccc
Q 002873 103 SLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLF-----DSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPI 176 (872)
Q Consensus 103 NlLp~~~davls~vadel~l~klfsd~~diee-dlf-----~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l 176 (872)
||.++.+++.+..+ |+.+++|.+ .+. .+.|.++|+|++.+.+..++.+++..... +..+.....
T Consensus 95 nLp~~~~~~~L~~~---------F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~-~~~i~v~~~ 164 (562)
T TIGR01628 95 NLDKSVDNKALFDT---------FSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLN-DKEVYVGRF 164 (562)
T ss_pred CCCccCCHHHHHHH---------HHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEec-CceEEEecc
Confidence 99887666655554 444555554 222 13456899999999999999877622111 111111000
Q ss_pred CCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhc
Q 002873 177 SNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQ 252 (872)
Q Consensus 177 ~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Ln 252 (872)
.. ..... .......++|||+|||.++|+++|+++|++||+|.++.+ .++++|||||+|.+.++|.+|++.|+
T Consensus 165 ~~---~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~ 240 (562)
T TIGR01628 165 IK---KHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMN 240 (562)
T ss_pred cc---ccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 00 00000 112345688999999999999999999999999999874 35678999999999999999999999
Q ss_pred Ccccc----cceeeeeecCCCCCCC--------------CccccccceeeeccCCccchhhHhhhhcccCCeEEEEe---
Q 002873 253 NKPLR----RRKLDIHFSIPKDNPS--------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--- 311 (872)
Q Consensus 253 g~~l~----gr~L~V~~a~pk~~~~--------------~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri--- 311 (872)
+..+. |+.|+|.++..+.... .......+|||+||+.++++++|+++|++||.|++|++
T Consensus 241 g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d 320 (562)
T TIGR01628 241 GKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD 320 (562)
T ss_pred CcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC
Confidence 99999 9999999886554321 01223457999999999999999999999999999976
Q ss_pred -CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcccchh
Q 002873 312 -TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARRNL 360 (872)
Q Consensus 312 -~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r~~~ 360 (872)
++.++|||||+|.+.++|.+|+++|||+.|+|++|.|.++.++..++..
T Consensus 321 ~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~ 370 (562)
T TIGR01628 321 EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAH 370 (562)
T ss_pred CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHH
Confidence 4567899999999999999999999999999999999999988776543
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=4.7e-28 Score=286.55 Aligned_cols=286 Identities=20% Similarity=0.300 Sum_probs=218.5
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-ccc------CCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccc
Q 002873 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLF------DSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAH 173 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf------~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~ 173 (872)
++||.++.+++-+.. +|+.++.|.+ .+. .+.|.++|+|...+.+.+++..++..... +..+.+
T Consensus 5 VgnLp~~vte~~L~~---------~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~-gk~i~i 74 (562)
T TIGR01628 5 VGDLDPDVTEAKLYD---------LFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG-GKPIRI 74 (562)
T ss_pred EeCCCCCCCHHHHHH---------HHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-CeeEEe
Confidence 688888755544444 5666666666 332 23356899999999999999877643221 111111
Q ss_pred cccCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHH
Q 002873 174 YPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMR 249 (872)
Q Consensus 174 ~~l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~ 249 (872)
.. . ..+........++|||+|||.++++++|+++|++||.|.+|++ .++++|||||+|.+.++|++|++
T Consensus 75 ~~-s------~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~ 147 (562)
T TIGR01628 75 MW-S------QRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQ 147 (562)
T ss_pred ec-c------cccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHH
Confidence 00 0 0111112233568999999999999999999999999999874 35689999999999999999999
Q ss_pred HhcCcccccceeeeeecCCCCCC-CCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEEC
Q 002873 250 ALQNKPLRRRKLDIHFSIPKDNP-SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFY 324 (872)
Q Consensus 250 ~Lng~~l~gr~L~V~~a~pk~~~-~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri----~~~skGfaFVeF~ 324 (872)
.++|..+.++.|+|....++... .......++|||+||+.++|+++|+++|++||.|.++++ .++++|||||+|.
T Consensus 148 ~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~ 227 (562)
T TIGR01628 148 KVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFE 227 (562)
T ss_pred HhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEEC
Confidence 99999999999999877655433 123334578999999999999999999999999999876 3456899999999
Q ss_pred CHHHHHHHHHHhCCceeC----CcEEEEEecCCCccc----------------------chhhhcCChhccHHHHHHhhh
Q 002873 325 DVRAAEAALRALNRSDIN----GKRIKLEPSRPGGAR----------------------RNLMQQLNQELEQDEARGFRH 378 (872)
Q Consensus 325 ~~e~A~kAl~~LnG~~l~----Gr~L~V~~s~p~~~r----------------------~~~~~ql~~~~tq~~l~~~f~ 378 (872)
+.++|.+|++.|+|..|. |+.|.|.+++++..+ ..+++++...+++++++.+|.
T Consensus 228 ~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~ 307 (562)
T TIGR01628 228 KHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFS 307 (562)
T ss_pred CHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHH
Confidence 999999999999999999 999999998776544 136788999999999999999
Q ss_pred ccCCCCCCCCCCCccccCCCcccCCCCC-CCCCCCCCCCCC
Q 002873 379 QVGSPVTNSPPGTWAQFGSPVERNPLHA-FSKSPGLGTLSP 418 (872)
Q Consensus 379 ~~Gsp~~~spp~~~s~~gsp~~~~~m~~-~s~s~g~g~v~p 418 (872)
+||.. .....+.+ .++++|+|||.-
T Consensus 308 ~~G~i---------------~~~~i~~d~~g~~~g~gfV~f 333 (562)
T TIGR01628 308 ECGEI---------------TSAKVMLDEKGVSRGFGFVCF 333 (562)
T ss_pred hcCCe---------------EEEEEEECCCCCcCCeEEEEe
Confidence 98842 22222322 467888888843
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=3.3e-27 Score=262.71 Aligned_cols=236 Identities=19% Similarity=0.267 Sum_probs=182.1
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccC------CCCcEEEEecChhhHHHhhhhhhcccCCcCCCccc
Q 002873 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFD------SGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAH 173 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf~------s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~ 173 (872)
++||.+.- ++-+|..+|+.+|+|.+ .+.. +.|.++|+|...+.+..++..++..... +..+.+
T Consensus 8 V~nLp~~~---------~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~-g~~i~v 77 (352)
T TIGR01661 8 VNYLPQTM---------TQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQ-NKTIKV 77 (352)
T ss_pred EeCCCCCC---------CHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEEC-CeeEEE
Confidence 78888764 44455558888888888 4432 2356899999999999998876632211 111111
Q ss_pred cccCCCCCcccCCCC-CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHH
Q 002873 174 YPISNGVGTVAGEHP-YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTA 247 (872)
Q Consensus 174 ~~l~n~~~~~~g~~~-~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~A 247 (872)
....+ ......++|||+|||..+++++|+++|++||.|..+++ .+.++|||||+|.+.++|++|
T Consensus 78 ----------~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~a 147 (352)
T TIGR01661 78 ----------SYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRA 147 (352)
T ss_pred ----------EeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 00111 11234678999999999999999999999999988773 356799999999999999999
Q ss_pred HHHhcCccccc--ceeeeeecCCCCCCCC----------------c----------------------------------
Q 002873 248 MRALQNKPLRR--RKLDIHFSIPKDNPSE----------------K---------------------------------- 275 (872)
Q Consensus 248 i~~Lng~~l~g--r~L~V~~a~pk~~~~~----------------~---------------------------------- 275 (872)
++.|+|..+.+ .+|.|.|+........ .
T Consensus 148 i~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (352)
T TIGR01661 148 IKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLA 227 (352)
T ss_pred HHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhh
Confidence 99999999876 5788888643320000 0
Q ss_pred --------------------------------------cccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----C
Q 002873 276 --------------------------------------DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----T 312 (872)
Q Consensus 276 --------------------------------------~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~ 312 (872)
.....+|||+|||+++++++|+++|++||.|.+|++ +
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t 307 (352)
T TIGR01661 228 HQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTT 307 (352)
T ss_pred hhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCC
Confidence 000125999999999999999999999999999976 4
Q ss_pred CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002873 313 PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 313 ~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
+.++|||||+|.+.++|.+|+.+|||..|+||+|+|.|...+..
T Consensus 308 ~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 308 NQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 66799999999999999999999999999999999999987764
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=4.5e-26 Score=264.89 Aligned_cols=305 Identities=20% Similarity=0.207 Sum_probs=219.5
Q ss_pred CcccccccccCCchhhHHHHh--cCCcccccccCcccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCcccccc--
Q 002873 25 PKKVGSGAWGISFGTEANNAS--NDASLFSSSLPVLPHEKLNFADSEHHDQSVDDSSPTLNKIDLENESNGPLAGVET-- 100 (872)
Q Consensus 25 ~~~~~~~tf~~p~~A~~a~~~--~d~s~Fqgrl~hil~~k~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~k~~~e~e~-- 100 (872)
.++.|++.|..+++|.+|+.. +++..+.||-+.|-.++.+...... + . + .........-.
T Consensus 37 ~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~-----~--~-------~--~~~~~~~~~~~v~ 100 (481)
T TIGR01649 37 GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDG-----N--S-------D--FDSAGPNKVLRVI 100 (481)
T ss_pred CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCC-----C--C-------c--ccCCCCCceEEEE
Confidence 468999999999999999986 4778899998888766533211100 0 0 0 00000011112
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccCCCC--cEEEEecChhhHHHhhhhhhcccCCcCC--------
Q 002873 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGG--GMELEFEPHESLSIGVSKLNISDGIAGT-------- 169 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf~s~G--gv~V~~d~~esa~~a~~k~~~~~~~~~n-------- 169 (872)
+.|+.+..+++.+.. +|+.+|+|.. .++...+ .++|+|+..+.+.+|+..++..+.....
T Consensus 101 v~nl~~~vt~~~L~~---------~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 101 VENPMYPITLDVLYQ---------IFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred EcCCCCCCCHHHHHH---------HHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 789887655555554 6677777888 7776554 4899999999999998877744321100
Q ss_pred ---Cccc---------c---ccCC----------------------------CCCcc------------cC---------
Q 002873 170 ---GIAH---------Y---PISN----------------------------GVGTV------------AG--------- 185 (872)
Q Consensus 170 ---gv~~---------~---~l~n----------------------------~~~~~------------~g--------- 185 (872)
.+.+ + .++. +-+.. .+
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 0000 0 0000 00000 00
Q ss_pred ---------------CCCCCCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHH
Q 002873 186 ---------------EHPYGEHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMR 249 (872)
Q Consensus 186 ---------------~~~~~e~~srtLfV~NLP~-~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~ 249 (872)
..+....++++|||+|||+ .+++++|+++|+.||.|.+|++....+|||||+|.+.++|++|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~ 331 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALT 331 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 0001134678999999998 699999999999999999998766678999999999999999999
Q ss_pred HhcCcccccceeeeeecCCCCCCCC------------c---------------------cccccceeeeccCCccchhhH
Q 002873 250 ALQNKPLRRRKLDIHFSIPKDNPSE------------K---------------------DVNQGTLVVFNLDASVSNDDL 296 (872)
Q Consensus 250 ~Lng~~l~gr~L~V~~a~pk~~~~~------------~---------------------~~~~~tLfV~NLp~~~TeedL 296 (872)
.|+|..|.|++|+|.++..+..... + .....+|||+|||.++++++|
T Consensus 332 ~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L 411 (481)
T TIGR01649 332 HLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDL 411 (481)
T ss_pred HhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHH
Confidence 9999999999999998754311000 0 012458999999999999999
Q ss_pred hhhhcccCC--eEEEEeCCC---CccEEEEEECCHHHHHHHHHHhCCceeCCcE------EEEEecCCC
Q 002873 297 RQIFGAYGE--VKEIRETPH---KRHHKFIEFYDVRAAEAALRALNRSDINGKR------IKLEPSRPG 354 (872)
Q Consensus 297 ~e~Fs~fG~--V~~vri~~~---skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~------L~V~~s~p~ 354 (872)
+++|+.||. |+.|++.+. ++++|||+|.+.++|.+||..|||+.|+|+. |+|.|++++
T Consensus 412 ~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 412 KELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999998 888877443 3789999999999999999999999999985 999999875
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=7.5e-27 Score=259.89 Aligned_cols=156 Identities=22% Similarity=0.411 Sum_probs=140.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002873 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
+.++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|+|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999874 46789999999999999999999999999999999999997
Q ss_pred CCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 002873 268 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (872)
Q Consensus 268 pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~ 342 (872)
+.... ....+|||+|||..+++++|+++|++||.|..+++ .+.++|||||+|.+.++|++|++.|||..+.
T Consensus 82 ~~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred ccccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 65432 34568999999999999999999999999998865 3456899999999999999999999999998
Q ss_pred C--cEEEEEecC
Q 002873 343 G--KRIKLEPSR 352 (872)
Q Consensus 343 G--r~L~V~~s~ 352 (872)
| ++|.|.++.
T Consensus 158 g~~~~i~v~~a~ 169 (352)
T TIGR01661 158 GCTEPITVKFAN 169 (352)
T ss_pred CCceeEEEEECC
Confidence 7 578888875
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=2.4e-26 Score=267.21 Aligned_cols=272 Identities=19% Similarity=0.223 Sum_probs=202.0
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccCCCCcEEEEecChhhHHHhhhhhhcccCCcC-CCccccccCC
Q 002873 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAG-TGIAHYPISN 178 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~-ngv~~~~l~n 178 (872)
++||.++.++ .+|..+|+.+|.|.+ .+...++.++|+|+..+++..++..+........ ..+.+ ....
T Consensus 7 V~nLp~~~te---------~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v-~~s~ 76 (481)
T TIGR01649 7 VRNLPQDVVE---------ADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFF-NYST 76 (481)
T ss_pred EcCCCCCCCH---------HHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEE-EecC
Confidence 6788887444 444457778888888 7777778899999999999999886542211111 11111 0010
Q ss_pred C--CCccc-CC-CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCC-cccEEEEEeCCHHHHHHHHHHhcC
Q 002873 179 G--VGTVA-GE-HPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK-HRGFVMISYYDIRAARTAMRALQN 253 (872)
Q Consensus 179 ~--~~~~~-g~-~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~k-srG~AFVeF~d~e~A~~Ai~~Lng 253 (872)
. ..... .+ .........+|||+||++.+|+++|+++|++||+|.+|.+..+ .+++|||+|.+.++|.+|++.|+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng 156 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNG 156 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcC
Confidence 0 00000 00 0111223358999999999999999999999999999985433 347999999999999999999999
Q ss_pred ccccc--ceeeeeecCCCCC-------CC----------C----------------------------------------
Q 002873 254 KPLRR--RKLDIHFSIPKDN-------PS----------E---------------------------------------- 274 (872)
Q Consensus 254 ~~l~g--r~L~V~~a~pk~~-------~~----------~---------------------------------------- 274 (872)
..|.+ +.|+|+|+.+..- .. +
T Consensus 157 ~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (481)
T TIGR01649 157 ADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLA 236 (481)
T ss_pred CcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCccc
Confidence 99965 4788888754210 00 0
Q ss_pred ----------------------------------ccccccceeeeccCC-ccchhhHhhhhcccCCeEEEEeCCCCccEE
Q 002873 275 ----------------------------------KDVNQGTLVVFNLDA-SVSNDDLRQIFGAYGEVKEIRETPHKRHHK 319 (872)
Q Consensus 275 ----------------------------------~~~~~~tLfV~NLp~-~~TeedL~e~Fs~fG~V~~vri~~~skGfa 319 (872)
......+|||+||++ .+++++|+++|+.||.|.+|++...++|||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~a 316 (481)
T TIGR01649 237 GGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETA 316 (481)
T ss_pred ccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEE
Confidence 001235899999998 699999999999999999999876678999
Q ss_pred EEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc-----------------------------------------ccc
Q 002873 320 FIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG-----------------------------------------ARR 358 (872)
Q Consensus 320 FVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~-----------------------------------------~r~ 358 (872)
||+|.+.++|.+|++.|||..|.|++|+|.+++... .+.
T Consensus 317 fV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~ 396 (481)
T TIGR01649 317 LIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSAT 396 (481)
T ss_pred EEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcE
Confidence 999999999999999999999999999999885321 012
Q ss_pred hhhhcCChhccHHHHHHhhhccCC
Q 002873 359 NLMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 359 ~~~~ql~~~~tq~~l~~~f~~~Gs 382 (872)
-++.+++..+++++++++|..+|.
T Consensus 397 L~v~NLp~~~tee~L~~lF~~~G~ 420 (481)
T TIGR01649 397 LHLSNIPLSVSEEDLKELFAENGV 420 (481)
T ss_pred EEEecCCCCCCHHHHHHHHHhcCC
Confidence 246788889999999999999985
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=1.8e-26 Score=256.73 Aligned_cols=164 Identities=23% Similarity=0.413 Sum_probs=146.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002873 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
......++|||+|||+++|+++|+++|+.||+|++|++ +++++|||||+|.++++|++|++.|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34557899999999999999999999999999999874 4678899999999999999999999999999999999
Q ss_pred eecCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCC
Q 002873 264 HFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNR 338 (872)
Q Consensus 264 ~~a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG 338 (872)
.|+.+... .....+|||.||+.++|+++|+++|++||+|+.|++ ++++++||||+|.+.++|++||+.||+
T Consensus 182 ~~a~p~~~----~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 182 SYARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eccccccc----ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 99876432 234568999999999999999999999999999865 455689999999999999999999999
Q ss_pred ceeCC--cEEEEEecCCCcc
Q 002873 339 SDING--KRIKLEPSRPGGA 356 (872)
Q Consensus 339 ~~l~G--r~L~V~~s~p~~~ 356 (872)
..+.| ++|+|.+++....
T Consensus 258 ~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CccCCCceeEEEEECCcccc
Confidence 99876 7899999987644
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=1.1e-24 Score=254.19 Aligned_cols=229 Identities=23% Similarity=0.318 Sum_probs=178.6
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-ccc-----CCCCcEEEEecChhhHHHhhhhhhcccCCcCCCcccc
Q 002873 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLF-----DSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHY 174 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf-----~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~ 174 (872)
++||.++.+++.+.. +|+.++.|.+ .+. .+.|.++|+|+..+.+..++..++-........+
T Consensus 63 VgnLp~~~tEd~L~~---------~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l--- 130 (578)
T TIGR01648 63 VGKIPRDLYEDELVP---------LFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL--- 130 (578)
T ss_pred eCCCCCCCCHHHHHH---------HHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc---
Confidence 999999865555555 5555565555 332 2446699999999999999987762221101000
Q ss_pred ccCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEe------CCCcccEEEEEeCCHHHHHHH
Q 002873 175 PISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLYT------ACKHRGFVMISYYDIRAARTA 247 (872)
Q Consensus 175 ~l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~-I~~v~~------~~ksrG~AFVeF~d~e~A~~A 247 (872)
. + ......++|||+|||.++++++|+++|++++. +..+.+ ..+++|||||+|.+.++|.+|
T Consensus 131 --~-----V-----~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~A 198 (578)
T TIGR01648 131 --G-----V-----CISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMA 198 (578)
T ss_pred --c-----c-----cccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHH
Confidence 0 0 01124689999999999999999999999974 333322 346799999999999999999
Q ss_pred HHHhcC--cccccceeeeeecCCCCCCCCcc-ccccceeeeccCCccchhhHhhhhccc--CCeEEEEeCCCCccEEEEE
Q 002873 248 MRALQN--KPLRRRKLDIHFSIPKDNPSEKD-VNQGTLVVFNLDASVSNDDLRQIFGAY--GEVKEIRETPHKRHHKFIE 322 (872)
Q Consensus 248 i~~Lng--~~l~gr~L~V~~a~pk~~~~~~~-~~~~tLfV~NLp~~~TeedL~e~Fs~f--G~V~~vri~~~skGfaFVe 322 (872)
++.|.. ..+.|+.|.|.|+.++....+.. ...++|||+||+.++++++|+++|++| |+|++|++. ++||||+
T Consensus 199 irkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVe 275 (578)
T TIGR01648 199 RRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVH 275 (578)
T ss_pred HHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEE
Confidence 998864 35789999999998876443322 234689999999999999999999999 999999764 6799999
Q ss_pred ECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002873 323 FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 323 F~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
|.+.++|++|+++|||.+|+|+.|+|.|++|...
T Consensus 276 F~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 276 FEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred eCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 9999999999999999999999999999998654
No 12
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.7e-24 Score=223.77 Aligned_cols=163 Identities=20% Similarity=0.422 Sum_probs=147.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002873 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
.-.+||+.|...++-++|++.|.+||+|.+++ .+.++|||+||.|.+.++|++||..|+|+-|.+|.|+-.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56899999999999999999999999998877 3689999999999999999999999999999999999999976
Q ss_pred CCCCC------------CccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHh
Q 002873 269 KDNPS------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL 336 (872)
Q Consensus 269 k~~~~------------~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~L 336 (872)
|.... ......++|||+|++.-++|++|++.|++||.|.+||+- +-+||+||+|.++|+|.+||..|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvF-k~qGYaFVrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVF-KDQGYAFVRFETKEAAAHAIVQM 220 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEe-cccceEEEEecchhhHHHHHHHh
Confidence 64221 122346799999999999999999999999999999997 45799999999999999999999
Q ss_pred CCceeCCcEEEEEecCCCccc
Q 002873 337 NRSDINGKRIKLEPSRPGGAR 357 (872)
Q Consensus 337 nG~~l~Gr~L~V~~s~p~~~r 357 (872)
|+++|.|+.+++.|.+.....
T Consensus 221 Nntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 221 NNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred cCceeCceEEEEeccccCCCC
Confidence 999999999999999876543
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=2.9e-24 Score=251.11 Aligned_cols=163 Identities=19% Similarity=0.382 Sum_probs=142.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002873 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
..++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4689999999999999999999999999999974 56799999999999999999999999999999999998753
Q ss_pred CCCCC-------CCccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHH
Q 002873 268 PKDNP-------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRA 335 (872)
Q Consensus 268 pk~~~-------~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~ 335 (872)
..... ........+|||+||++++++++|+++|+.||.|++|++. ++++|||||+|.+.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 22111 0111234689999999999999999999999999999763 45789999999999999999999
Q ss_pred hCCceeCCcEEEEEecCCCc
Q 002873 336 LNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 336 LnG~~l~Gr~L~V~~s~p~~ 355 (872)
||+..|+|+.|+|.++.+..
T Consensus 266 mNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred hCCCeeCCeEEEEEecCCCc
Confidence 99999999999999887543
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.6e-23 Score=225.99 Aligned_cols=164 Identities=23% Similarity=0.435 Sum_probs=143.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCccc-c--cceeee
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPL-R--RRKLDI 263 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l-~--gr~L~V 263 (872)
.+.-+|||+-||..++|+||+++|++||.|.+|. .++.++|||||.|++.++|.+|+.+|++.+. - ..+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4557899999999999999999999999999886 4678999999999999999999999988664 3 468899
Q ss_pred eecCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCc
Q 002873 264 HFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRS 339 (872)
Q Consensus 264 ~~a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~ 339 (872)
+|+..+.+.. ....+|||+-|+..+||.|++++|++||.|++|++ .+.+||+|||.|.+.|.|..||++|||.
T Consensus 112 k~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 112 KYADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred cccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 9986543322 34678999999999999999999999999999976 4578999999999999999999999997
Q ss_pred -eeCC--cEEEEEecCCCcccc
Q 002873 340 -DING--KRIKLEPSRPGGARR 358 (872)
Q Consensus 340 -~l~G--r~L~V~~s~p~~~r~ 358 (872)
.+.| .+|.|+|+.+++.+.
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred eeeccCCCceEEEecccCCCch
Confidence 6777 589999999877654
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=4.9e-24 Score=232.68 Aligned_cols=164 Identities=23% Similarity=0.445 Sum_probs=144.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEE------eCCCcccEEEEEeCCHHHHHHHHHHhcC--cccccceee
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLY------TACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLD 262 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~-I~~v~------~~~ksrG~AFVeF~d~e~A~~Ai~~Lng--~~l~gr~L~ 262 (872)
..+++|||+|||.+.+++||.+.|++.++ |.+|. ...++||||||+|++...|..|.++|-. .++.|..+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 35799999999999999999999999986 56654 2567999999999999999999998854 456899999
Q ss_pred eeecCCCCCCCCcccc-ccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCcee
Q 002873 263 IHFSIPKDNPSEKDVN-QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI 341 (872)
Q Consensus 263 V~~a~pk~~~~~~~~~-~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l 341 (872)
|.|+.|+..+.+.... -+.|||+||+.+||+|.|+++|++||.|..|+.. +-||||.|.+.++|.+|++.|||++|
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cceeEEeecchHHHHHHHHHhcCcee
Confidence 9999998877655332 3579999999999999999999999999999754 66999999999999999999999999
Q ss_pred CCcEEEEEecCCCcccc
Q 002873 342 NGKRIKLEPSRPGGARR 358 (872)
Q Consensus 342 ~Gr~L~V~~s~p~~~r~ 358 (872)
+|..|.|.+++|..+++
T Consensus 319 dG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 319 DGSPIEVTLAKPVDKKK 335 (506)
T ss_pred cCceEEEEecCChhhhc
Confidence 99999999999977654
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=5.1e-23 Score=240.31 Aligned_cols=219 Identities=20% Similarity=0.257 Sum_probs=173.6
Q ss_pred ChhhHHHhhhhhhcccCCcCCCccccccCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--
Q 002873 149 PHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-- 226 (872)
Q Consensus 149 ~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-- 226 (872)
..|++.+++...+-......++...+..+.. . .........++|||+|||.+++|++|+++|++||.|.+|++
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~---~--~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~ 92 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPP---G--WSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMM 92 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCC---c--ccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEE
Confidence 4566777777666454555555544443211 0 11112234689999999999999999999999999999874
Q ss_pred --CCCcccEEEEEeCCHHHHHHHHHHhcCcccc-cceeeeeecCCCCCCCCccccccceeeeccCCccchhhHhhhhccc
Q 002873 227 --ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAY 303 (872)
Q Consensus 227 --~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~-gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~f 303 (872)
+++++|||||+|.+.++|++|++.|++..+. ++.|.|.++. ..++|||+|||.++++++|.+.|+++
T Consensus 93 D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~----------~~~rLFVgNLP~~~TeeeL~eeFskv 162 (578)
T TIGR01648 93 DFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV----------DNCRLFVGGIPKNKKREEILEEFSKV 162 (578)
T ss_pred CCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc----------cCceeEeecCCcchhhHHHHHHhhcc
Confidence 4789999999999999999999999999886 7777777653 35689999999999999999999998
Q ss_pred CC-eEEEEe------CCCCccEEEEEECCHHHHHHHHHHhCC--ceeCCcEEEEEecCCCcc---------cchhhhcCC
Q 002873 304 GE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALRALNR--SDINGKRIKLEPSRPGGA---------RRNLMQQLN 365 (872)
Q Consensus 304 G~-V~~vri------~~~skGfaFVeF~~~e~A~kAl~~LnG--~~l~Gr~L~V~~s~p~~~---------r~~~~~ql~ 365 (872)
+. ++++.+ ..+++|||||+|.++++|.+|++.|+. ..+.|+.|.|+|+.+... +..++.+|+
T Consensus 163 ~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~ 242 (578)
T TIGR01648 163 TEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLM 242 (578)
T ss_pred cCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCC
Confidence 63 444432 235689999999999999999998864 368899999999987542 335889999
Q ss_pred hhccHHHHHHhhhcc--CC
Q 002873 366 QELEQDEARGFRHQV--GS 382 (872)
Q Consensus 366 ~~~tq~~l~~~f~~~--Gs 382 (872)
.++++++|+.+|.+| |.
T Consensus 243 ~~~tee~L~~~F~~f~~G~ 261 (578)
T TIGR01648 243 TTTTEEIIEKSFSEFKPGK 261 (578)
T ss_pred CCCCHHHHHHHHHhcCCCc
Confidence 999999999999999 64
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=5.3e-23 Score=211.18 Aligned_cols=235 Identities=19% Similarity=0.316 Sum_probs=185.2
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccCCC------CcEEEEecChhhHHHhhhhhhcccCCcCCCccc
Q 002873 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSG------GGMELEFEPHESLSIGVSKLNISDGIAGTGIAH 173 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf~s~------Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~ 173 (872)
|-|.||.+ +++.+++.+|.+++|||. ++...+ |..+|.+-..+.+.+++..++ |+
T Consensus 45 IvNYLPQ~--------MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlN--------GL-- 106 (360)
T KOG0145|consen 45 IVNYLPQN--------MTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLN--------GL-- 106 (360)
T ss_pred eeeecccc--------cCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhc--------ce--
Confidence 99999974 566778889999999999 554332 336777777777777776555 22
Q ss_pred cccCCCCCcccCCCCC-CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHH
Q 002873 174 YPISNGVGTVAGEHPY-GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTA 247 (872)
Q Consensus 174 ~~l~n~~~~~~g~~~~-~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~A 247 (872)
++.+...++...+|. .......|||.+||..+|..||+.+|++||.|..-+ +++.+||.+||.|....+|+.|
T Consensus 107 -rLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~A 185 (360)
T KOG0145|consen 107 -RLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEA 185 (360)
T ss_pred -eeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHH
Confidence 333333344444443 335567999999999999999999999999986544 5788999999999999999999
Q ss_pred HHHhcCccccc--ceeeeeecCCCCCC-------------CC--------------------------------------
Q 002873 248 MRALQNKPLRR--RKLDIHFSIPKDNP-------------SE-------------------------------------- 274 (872)
Q Consensus 248 i~~Lng~~l~g--r~L~V~~a~pk~~~-------------~~-------------------------------------- 274 (872)
++.|+|.+-.| .+|.|+|+...... ..
T Consensus 186 Ik~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~ 265 (360)
T KOG0145|consen 186 IKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSG 265 (360)
T ss_pred HHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccce
Confidence 99999998765 58899987432110 00
Q ss_pred --------ccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCcee
Q 002873 275 --------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDI 341 (872)
Q Consensus 275 --------~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l 341 (872)
......+|||.||.++++|.-|+++|.+||.|..|++ +.+.+|||||.+.+.++|..|+..|||+.+
T Consensus 266 l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~l 345 (360)
T KOG0145|consen 266 LAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 345 (360)
T ss_pred eeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccc
Confidence 0001248999999999999999999999999999876 356799999999999999999999999999
Q ss_pred CCcEEEEEecCCC
Q 002873 342 NGKRIKLEPSRPG 354 (872)
Q Consensus 342 ~Gr~L~V~~s~p~ 354 (872)
++|.|.|.|...+
T Consensus 346 g~rvLQVsFKtnk 358 (360)
T KOG0145|consen 346 GDRVLQVSFKTNK 358 (360)
T ss_pred cceEEEEEEecCC
Confidence 9999999986543
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=9.9e-23 Score=235.02 Aligned_cols=162 Identities=25% Similarity=0.449 Sum_probs=142.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002873 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
.+++.++|||+|||..+++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+. |+|..+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 3567899999999999999999999999999999884 46789999999999999999997 99999999999999
Q ss_pred ecCCCCCCCC--------ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHH
Q 002873 265 FSIPKDNPSE--------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEA 331 (872)
Q Consensus 265 ~a~pk~~~~~--------~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~k 331 (872)
++........ ......+|||+||+..+++++|+++|++||.|..|++. ++++|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8654322111 11235789999999999999999999999999999763 4678999999999999999
Q ss_pred HHHHhCCceeCCcEEEEEecC
Q 002873 332 ALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 332 Al~~LnG~~l~Gr~L~V~~s~ 352 (872)
|++.|||..|.|++|+|.++.
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHhcCCcEECCEEEEEEEcc
Confidence 999999999999999999987
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.89 E-value=7.3e-22 Score=230.73 Aligned_cols=251 Identities=17% Similarity=0.239 Sum_probs=176.4
Q ss_pred ccCCCCcchhHHHhhcccccccccC---CCccccccc-cccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCcccc--
Q 002873 101 IGSLLPDDENDLLAGLVDDFDLRGL---PSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHY-- 174 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~kl---fsd~~diee-dlf~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~-- 174 (872)
++||.+..+++-|..++.++..... ..+.+.|.. .+-...|.++|+|+..+.+..+++ ++.... .+..+.+.
T Consensus 180 VgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~-~g~~l~v~r~ 257 (509)
T TIGR01642 180 VGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA-LDSIIY-SNVFLKIRRP 257 (509)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc-CCCeEe-eCceeEecCc
Confidence 9999998777766666554311110 111334444 344456779999999999998874 321110 00011100
Q ss_pred ---c-cCCC---CCcc-----cC------CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcc
Q 002873 175 ---P-ISNG---VGTV-----AG------EHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHR 231 (872)
Q Consensus 175 ---~-l~n~---~~~~-----~g------~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksr 231 (872)
. .... .... .. .........++|||+|||..+++++|+++|+.||.|..+.+ ++.++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~ 337 (509)
T TIGR01642 258 HDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSK 337 (509)
T ss_pred cccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcC
Confidence 0 0000 0000 00 00012245689999999999999999999999999998763 46789
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCCCC------------------------ccccccceeeecc
Q 002873 232 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSE------------------------KDVNQGTLVVFNL 287 (872)
Q Consensus 232 G~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~------------------------~~~~~~tLfV~NL 287 (872)
|||||+|.+.++|..|+..|+|..|.|++|.|+++........ ......+|+|.|+
T Consensus 338 g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~ 417 (509)
T TIGR01642 338 GYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNL 417 (509)
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccC
Confidence 9999999999999999999999999999999999754321100 0113467899998
Q ss_pred CCc----------cchhhHhhhhcccCCeEEEEeCC--------CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002873 288 DAS----------VSNDDLRQIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 288 p~~----------~TeedL~e~Fs~fG~V~~vri~~--------~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
... ...++|+++|++||.|+.|.+.. ...|++||+|.+.++|++|+.+|||..|+|+.|.|.
T Consensus 418 ~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~ 497 (509)
T TIGR01642 418 VTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAA 497 (509)
T ss_pred CchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 632 12368999999999999998742 236899999999999999999999999999999999
Q ss_pred ecCC
Q 002873 350 PSRP 353 (872)
Q Consensus 350 ~s~p 353 (872)
|...
T Consensus 498 ~~~~ 501 (509)
T TIGR01642 498 FYGE 501 (509)
T ss_pred EeCH
Confidence 9754
No 20
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=3.8e-22 Score=218.05 Aligned_cols=181 Identities=21% Similarity=0.342 Sum_probs=160.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccc-cceeeeee
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHF 265 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~-gr~L~V~~ 265 (872)
.-.+.|||+.||.++.|+||.-+|++.|+|-+++ .++.+||||||.|.+.++|++|++.||+..|+ |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4578999999999999999999999999999998 35789999999999999999999999999996 89999987
Q ss_pred cCCCCCCCCccccccceeeeccCCccchhhHhhhhcccC-CeEEEEe------CCCCccEEEEEECCHHHHHHHHHHh-C
Q 002873 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRE------TPHKRHHKFIEFYDVRAAEAALRAL-N 337 (872)
Q Consensus 266 a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG-~V~~vri------~~~skGfaFVeF~~~e~A~kAl~~L-n 337 (872)
+. ..++|||+|||...++++|.+.|++.+ .|.+|.+ ..+.||||||+|+++..|..|.+.| +
T Consensus 161 Sv----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 161 SV----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred ee----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 74 467899999999999999999999986 3666643 3467999999999999999999888 4
Q ss_pred Cc-eeCCcEEEEEecCCCcc---------cchhhhcCChhccHHHHHHhhhccCC
Q 002873 338 RS-DINGKRIKLEPSRPGGA---------RRNLMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 338 G~-~l~Gr~L~V~~s~p~~~---------r~~~~~ql~~~~tq~~l~~~f~~~Gs 382 (872)
|+ .+.|+.+.|.|+.|... +..|++||+..+|++.+...|.++|.
T Consensus 231 g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ 285 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGK 285 (506)
T ss_pred CceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccc
Confidence 43 78999999999998653 23489999999999999999999985
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.88 E-value=6.4e-22 Score=228.29 Aligned_cols=242 Identities=23% Similarity=0.293 Sum_probs=174.4
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccC------CCCcEEEEecChhhHHHhhhhhhcccCCcCCCccc
Q 002873 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFD------SGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAH 173 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf~------s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~ 173 (872)
++||.+...++-+ ..+|+.++.|.+ .+.. ..|.++|+|...+.+..++..... . ..+..+.+
T Consensus 94 V~nlp~~~~~~~l---------~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~-~-~~g~~i~v 162 (457)
T TIGR01622 94 VLQLALKARERDL---------YEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQ-M-LLGRPIIV 162 (457)
T ss_pred EeCCCCCCCHHHH---------HHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCC-E-ECCeeeEE
Confidence 8999887554444 446666777777 4432 346689999999999998753211 0 01111111
Q ss_pred cccCCC---CCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHH
Q 002873 174 YPISNG---VGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAAR 245 (872)
Q Consensus 174 ~~l~n~---~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~ 245 (872)
...... ...............++|||+|||..+++++|+++|++||.|..|.+ +++++|||||+|.+.++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 000000 00000000111123689999999999999999999999999999874 2478899999999999999
Q ss_pred HHHHHhcCcccccceeeeeecCCCCCC-----------------------------------C-----------------
Q 002873 246 TAMRALQNKPLRRRKLDIHFSIPKDNP-----------------------------------S----------------- 273 (872)
Q Consensus 246 ~Ai~~Lng~~l~gr~L~V~~a~pk~~~-----------------------------------~----------------- 273 (872)
+|+..|+|..|.|++|.|.|+...... .
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALM 322 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhh
Confidence 999999999999999999995311000 0
Q ss_pred -------------C---------------------ccccccceeeeccCCccc----------hhhHhhhhcccCCeEEE
Q 002873 274 -------------E---------------------KDVNQGTLVVFNLDASVS----------NDDLRQIFGAYGEVKEI 309 (872)
Q Consensus 274 -------------~---------------------~~~~~~tLfV~NLp~~~T----------eedL~e~Fs~fG~V~~v 309 (872)
. ......+|+|.||-...+ .+||++.|++||.|+.|
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v 402 (457)
T TIGR01622 323 QKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHI 402 (457)
T ss_pred ccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEE
Confidence 0 001235688888854433 36899999999999999
Q ss_pred EeC-CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002873 310 RET-PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 310 ri~-~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
.+. +...|++||+|.+.++|.+|++.|||..++|+.|.|.+...
T Consensus 403 ~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 403 YVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred EEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 885 67789999999999999999999999999999999999754
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.5e-22 Score=207.98 Aligned_cols=159 Identities=25% Similarity=0.429 Sum_probs=144.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002873 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
+...+.|.|.-||.++|++||+.+|...|+|++|+ +++.+-||+||.|.++++|++|+..|+|.++..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45678899999999999999999999999999998 5788999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCce
Q 002873 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSD 340 (872)
Q Consensus 266 a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~ 340 (872)
+.|... .+....|||.+||...|..||.++|++||.|..-|+ ++.++|.|||+|+..++|++||+.|||..
T Consensus 118 ARPSs~----~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSSD----SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCChh----hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 987543 345668999999999999999999999999877653 67889999999999999999999999998
Q ss_pred eCC--cEEEEEecCC
Q 002873 341 ING--KRIKLEPSRP 353 (872)
Q Consensus 341 l~G--r~L~V~~s~p 353 (872)
-.| .+|.|+|+..
T Consensus 194 P~g~tepItVKFann 208 (360)
T KOG0145|consen 194 PSGCTEPITVKFANN 208 (360)
T ss_pred CCCCCCCeEEEecCC
Confidence 776 4899999864
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=7.3e-22 Score=230.70 Aligned_cols=164 Identities=18% Similarity=0.302 Sum_probs=136.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcc------------CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCccc
Q 002873 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQY------------GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 256 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~f------------G~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l 256 (872)
...+..++|||+|||+++|+++|+++|.+| +.|..+. ..+.+|||||+|.+.++|..||. |+|..|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~-~~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN-INKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE-ECCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 456678999999999999999999999975 3455553 45789999999999999999995 999999
Q ss_pred ccceeeeeecCCCCC------------CC-------------CccccccceeeeccCCccchhhHhhhhcccCCeEEEEe
Q 002873 257 RRRKLDIHFSIPKDN------------PS-------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE 311 (872)
Q Consensus 257 ~gr~L~V~~a~pk~~------------~~-------------~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri 311 (872)
.|++|.|........ +. .......+|||+|||..+++++|+++|+.||.|+.+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 999999975321110 00 00112468999999999999999999999999999865
Q ss_pred -----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002873 312 -----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 312 -----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
++.++|||||+|.+.++|.+|++.|+|..|.|++|.|.++..+
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 3567999999999999999999999999999999999998643
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=3.9e-21 Score=213.84 Aligned_cols=166 Identities=21% Similarity=0.392 Sum_probs=142.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002873 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
.-+|.|+|||+.+.+.+|+.+|+.||.|..|.+ .++-.|||||+|.+..+|.+|++.+++..|.||++-|.|+.++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 468999999999999999999999999999984 3445699999999999999999999999999999999998654
Q ss_pred CCCC-----------------------------------------Cc--cc-----------------------------
Q 002873 270 DNPS-----------------------------------------EK--DV----------------------------- 277 (872)
Q Consensus 270 ~~~~-----------------------------------------~~--~~----------------------------- 277 (872)
+.-. ++ +.
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 2100 00 00
Q ss_pred --------------cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHh--
Q 002873 278 --------------NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRAL-- 336 (872)
Q Consensus 278 --------------~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~L-- 336 (872)
...||||+||++++|+++|.+.|++||.|.++.+ +++++|.|||.|.+..+|++||.+.
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 0148999999999999999999999999999864 6788999999999999999999977
Q ss_pred ---CC-ceeCCcEEEEEecCCCcccch
Q 002873 337 ---NR-SDINGKRIKLEPSRPGGARRN 359 (872)
Q Consensus 337 ---nG-~~l~Gr~L~V~~s~p~~~r~~ 359 (872)
.| ..|+||.|.|..+-++.....
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~RkeA~d 383 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKEAAD 383 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHHHHH
Confidence 34 678999999999988776554
No 25
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=3.9e-21 Score=200.69 Aligned_cols=150 Identities=29% Similarity=0.433 Sum_probs=139.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCCCC
Q 002873 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSE 274 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~ 274 (872)
-+|||+|||..+++.+|+.+|++||+|.+|.+ -|.|+||+.++...|+.|++.|++..|+|..|.|+-++.|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 37999999999999999999999999999975 37799999999999999999999999999999999887653
Q ss_pred ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002873 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
....+|+|+||.+.++.+||+..|++||.|.+|++. ++|+||.|+-.++|..|++.|++++++|++++|+++..+
T Consensus 76 --k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 --KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred --CCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 346789999999999999999999999999999986 789999999999999999999999999999999999765
Q ss_pred cc
Q 002873 355 GA 356 (872)
Q Consensus 355 ~~ 356 (872)
-.
T Consensus 151 lr 152 (346)
T KOG0109|consen 151 LR 152 (346)
T ss_pred cc
Confidence 43
No 26
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.83 E-value=2.3e-20 Score=184.13 Aligned_cols=163 Identities=23% Similarity=0.313 Sum_probs=143.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
....||||+||+..++++-|.++|-+.|+|..++ ++..++|||||+|.++++|+-|++-|+..+|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4568999999999999999999999999999997 45679999999999999999999999999999999999987
Q ss_pred CCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEE------EeCCCCccEEEEEECCHHHHHHHHHHhCCce
Q 002873 267 IPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI------RETPHKRHHKFIEFYDVRAAEAALRALNRSD 340 (872)
Q Consensus 267 ~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~v------ri~~~skGfaFVeF~~~e~A~kAl~~LnG~~ 340 (872)
... .........|||+||++.+++..|.++|+.||.+... ..++.+++||||.|.+.|.+.+|+..|||..
T Consensus 87 s~~---~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 87 SAH---QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred ccc---cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 511 1222234789999999999999999999999987663 2356889999999999999999999999999
Q ss_pred eCCcEEEEEecCCCccc
Q 002873 341 INGKRIKLEPSRPGGAR 357 (872)
Q Consensus 341 l~Gr~L~V~~s~p~~~r 357 (872)
+..++|+|.++..+..+
T Consensus 164 l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTK 180 (203)
T ss_pred hcCCceEEEEEEecCCC
Confidence 99999999999876543
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=9.7e-20 Score=204.13 Aligned_cols=262 Identities=18% Similarity=0.311 Sum_probs=199.4
Q ss_pred cCCCccccccc-----cccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCCCCcccCCCCCCCCCCcEEE
Q 002873 124 GLPSQLEDLED-----DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLF 198 (872)
Q Consensus 124 klfsd~~diee-----dlf~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~~~~~~g~~~~~e~~srtLf 198 (872)
..|+..+.+.. |. .+.|-.+|.|...+.+.+|+..+++...... .+ ++. ...++.+.||
T Consensus 17 ~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~-~~---rim-----------~s~rd~~~~~ 80 (369)
T KOG0123|consen 17 DKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGK-PI---RIM-----------WSQRDPSLVF 80 (369)
T ss_pred HHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCCc-EE---Eee-----------hhccCCceee
Confidence 34454444444 44 3666789999999999999999885543111 11 000 1123334499
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEeC---CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCCCCc
Q 002873 199 VRNINSNVEDLELRSLFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEK 275 (872)
Q Consensus 199 V~NLP~~vteeeLr~lFs~fG~I~~v~~~---~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~ 275 (872)
|+||+++++.++|.++|+.||+|.+|++. .-++|| ||+|.+.++|++|+..++|..+.+++|+|.....+......
T Consensus 81 i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~ 159 (369)
T KOG0123|consen 81 IKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAP 159 (369)
T ss_pred ecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhccc
Confidence 99999999999999999999999999842 238899 99999999999999999999999999999887665443222
Q ss_pred ----cccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEE
Q 002873 276 ----DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (872)
Q Consensus 276 ----~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~ 347 (872)
...-+.++|+|++.+++++.|.+.|..||.|..+.+ .+++++|+||+|.+.++|..|++.|++..+.++.+.
T Consensus 160 ~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~ 239 (369)
T KOG0123|consen 160 LGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELY 239 (369)
T ss_pred ccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCcccee
Confidence 123467999999999999999999999999999865 345789999999999999999999999999999999
Q ss_pred EEecCCCcccch----------------------hhhcCChhccHHHHHHhhhccCCCCCCCCCCCccccCCCcccCCCC
Q 002873 348 LEPSRPGGARRN----------------------LMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLH 405 (872)
Q Consensus 348 V~~s~p~~~r~~----------------------~~~ql~~~~tq~~l~~~f~~~Gsp~~~spp~~~s~~gsp~~~~~m~ 405 (872)
|..+..+.++.. +++++...++.+.++..|..+|. .+....|.
T Consensus 240 V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~Ge---------------I~s~kv~~ 304 (369)
T KOG0123|consen 240 VGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGE---------------ITSAKVMV 304 (369)
T ss_pred ecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccc---------------eeeEEEEe
Confidence 999887544332 44445555666666666666663 33333333
Q ss_pred -CCCCCCCCCCCC
Q 002873 406 -AFSKSPGLGTLS 417 (872)
Q Consensus 406 -~~s~s~g~g~v~ 417 (872)
..+++.|+|+|.
T Consensus 305 ~~~g~skG~gfV~ 317 (369)
T KOG0123|consen 305 DENGKSKGFGFVE 317 (369)
T ss_pred ccCCCccceEEEE
Confidence 257788888884
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=6.3e-20 Score=205.63 Aligned_cols=289 Identities=21% Similarity=0.285 Sum_probs=221.2
Q ss_pred CcccccccccCCchhhHHHHhcCCcccccccCcccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCcccccc-ccC
Q 002873 25 PKKVGSGAWGISFGTEANNASNDASLFSSSLPVLPHEKLNFADSEHHDQSVDDSSPTLNKIDLENESNGPLAGVET-IGS 103 (872)
Q Consensus 25 ~~~~~~~tf~~p~~A~~a~~~~d~s~Fqgrl~hil~~k~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~k~~~e~e~-iwN 103 (872)
.-+-||+.|..|++|.+|+.+++-..+.|+.+-|....... ++ . |-|
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~---------------~~-----------------~~i~n 83 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP---------------SL-----------------VFIKN 83 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC---------------ce-----------------eeecC
Confidence 56789999999999999999999999999988887743111 00 4 667
Q ss_pred CCCcchhHHHhhcccccccccCCCccccccc-cc----cCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCC
Q 002873 104 LLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DL----FDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISN 178 (872)
Q Consensus 104 lLp~~~davls~vadel~l~klfsd~~diee-dl----f~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n 178 (872)
+.++.++..+.. .|+.+++|-. .+ -.++|+ +|.|+..+++..++..++-. ..++...+...-
T Consensus 84 l~~~~~~~~~~d---------~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~---ll~~kki~vg~~ 150 (369)
T KOG0123|consen 84 LDESIDNKSLYD---------TFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGM---LLNGKKIYVGLF 150 (369)
T ss_pred CCcccCcHHHHH---------HHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCc---ccCCCeeEEeec
Confidence 878776666665 4445555554 22 225566 99999999999999987722 112211111100
Q ss_pred CCCcccCCCCC--CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhc
Q 002873 179 GVGTVAGEHPY--GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQ 252 (872)
Q Consensus 179 ~~~~~~g~~~~--~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Ln 252 (872)
- .......+. ....-+.+||+|++.++++++|.++|..||.|..+.+ .+++++|+||.|.+.++|..|+..|+
T Consensus 151 ~-~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 151 E-RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred c-chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhcc
Confidence 0 000011111 2234578999999999999999999999999999873 45689999999999999999999999
Q ss_pred CcccccceeeeeecCCCCCC--------------CCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCC
Q 002873 253 NKPLRRRKLDIHFSIPKDNP--------------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPH 314 (872)
Q Consensus 253 g~~l~gr~L~V~~a~pk~~~--------------~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri----~~~ 314 (872)
+..+.+..+.|..+..+... .........|||+||+..++.+.|+++|+.||+|..+++ .++
T Consensus 230 ~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~ 309 (369)
T KOG0123|consen 230 GKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGK 309 (369)
T ss_pred CCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCC
Confidence 99999999999887653211 011234568999999999999999999999999999876 467
Q ss_pred CccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcccch
Q 002873 315 KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARRN 359 (872)
Q Consensus 315 skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r~~ 359 (872)
++||+||+|.+.++|.+|+..+|+..+.++.|.|.+++....++.
T Consensus 310 skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~ 354 (369)
T KOG0123|consen 310 SKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRA 354 (369)
T ss_pred ccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchh
Confidence 899999999999999999999999999999999999986655543
No 29
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.4e-19 Score=201.56 Aligned_cols=162 Identities=22% Similarity=0.366 Sum_probs=143.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002873 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
.||||++||+.++.++|.++|+.+|+|..|.+ ...+|||+||.|.-.+++++|+..+.+..|.|+.|.|..+.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999873 3468999999999999999999999999999999999998665
Q ss_pred CCCCC--------------------c--cccccceeeeccCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEE
Q 002873 270 DNPSE--------------------K--DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEF 323 (872)
Q Consensus 270 ~~~~~--------------------~--~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~----~~skGfaFVeF 323 (872)
..... . +.....|.|+|||+.+...+|+.+|+.||.|.+|.|. ++-+|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 43220 0 1124689999999999999999999999999999874 34579999999
Q ss_pred CCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002873 324 YDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 324 ~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
....+|.+|++.+||..|+||+|-|.||-++..
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 999999999999999999999999999988753
No 30
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1.2e-18 Score=189.99 Aligned_cols=234 Identities=21% Similarity=0.361 Sum_probs=174.2
Q ss_pred ccccccccCCCccccccc-ccc------CCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCCCCcccCCCCC
Q 002873 117 VDDFDLRGLPSQLEDLED-DLF------DSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTVAGEHPY 189 (872)
Q Consensus 117 adel~l~klfsd~~diee-dlf------~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~~~~~~g~~~~ 189 (872)
+.|.+++.+|...+.+.| .+. .+.|.|+|.+.+.+++.+++..++-.+. -.|....-. ++-.++|+..
T Consensus 46 ~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~kt--lpG~~~pvq---vk~Ad~E~er 120 (510)
T KOG0144|consen 46 ASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKT--LPGMHHPVQ---VKYADGERER 120 (510)
T ss_pred ccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccc--cCCCCccee---ecccchhhhc
Confidence 344555555555555555 322 2456799999999998888887762222 111111000 1111122111
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcc-cc--cceee
Q 002873 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LR--RRKLD 262 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~-l~--gr~L~ 262 (872)
-...++|||+-|+..++|.|++++|++||.|++|++ .+.+||||||.|.+.+.|..||++|++.. ++ ..+|.
T Consensus 121 -~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 121 -IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred -cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 134789999999999999999999999999999984 56799999999999999999999999964 44 46899
Q ss_pred eeecCCCCCCCC--------------------------------------------------------------------
Q 002873 263 IHFSIPKDNPSE-------------------------------------------------------------------- 274 (872)
Q Consensus 263 V~~a~pk~~~~~-------------------------------------------------------------------- 274 (872)
|+|+.++++...
T Consensus 200 VkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~ 279 (510)
T KOG0144|consen 200 VKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAA 279 (510)
T ss_pred EEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHH
Confidence 999765421100
Q ss_pred --------------------------------------------------------------------------------
Q 002873 275 -------------------------------------------------------------------------------- 274 (872)
Q Consensus 275 -------------------------------------------------------------------------------- 274 (872)
T Consensus 280 ~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp 359 (510)
T KOG0144|consen 280 LAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSP 359 (510)
T ss_pred hhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCc
Confidence
Q ss_pred ------------------------------------------------------------ccccccceeeeccCCccchh
Q 002873 275 ------------------------------------------------------------KDVNQGTLVVFNLDASVSND 294 (872)
Q Consensus 275 ------------------------------------------------------------~~~~~~tLfV~NLp~~~Tee 294 (872)
+......|||.+||.+.-+.
T Consensus 360 ~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq 439 (510)
T KOG0144|consen 360 VAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQ 439 (510)
T ss_pred ccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhH
Confidence 00001379999999999999
Q ss_pred hHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002873 295 DLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 295 dL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
+|-..|..||.|++.++ ++-++.|+||.|++..+|..||..|||..|+.++|+|...+.+..
T Consensus 440 ~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 440 DLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 99999999999999854 566899999999999999999999999999999999999876654
No 31
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.76 E-value=1.9e-18 Score=198.38 Aligned_cols=162 Identities=26% Similarity=0.461 Sum_probs=140.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC--------CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002873 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~--------~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
++|||+||+++++.++|..+|.+.|.|.++.+. ..+.|||||+|.+.++|++|++.|+|+.|.|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999998632 124599999999999999999999999999999999998
Q ss_pred CCCCCC--C---CccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCC-----CccEEEEEECCHHHHHHHHHHh
Q 002873 267 IPKDNP--S---EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH-----KRHHKFIEFYDVRAAEAALRAL 336 (872)
Q Consensus 267 ~pk~~~--~---~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~-----skGfaFVeF~~~e~A~kAl~~L 336 (872)
..+... . ......+.|.|+|||+..+..+++++|..||.|++|++..+ .+|||||+|-++++|.+|+++|
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 722110 0 01112468999999999999999999999999999998543 4899999999999999999999
Q ss_pred CCceeCCcEEEEEecCCCcc
Q 002873 337 NRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 337 nG~~l~Gr~L~V~~s~p~~~ 356 (872)
..+.|.||+|.++|+.....
T Consensus 676 ~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cccceechhhheehhccchH
Confidence 99999999999999987654
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.75 E-value=1e-16 Score=188.06 Aligned_cols=157 Identities=16% Similarity=0.257 Sum_probs=112.1
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-ccc------CCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccc
Q 002873 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLF------DSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAH 173 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf------~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~ 173 (872)
++|+.+...++-+.. +|..++.|.+ .+. .+.|.++|+|+..+.+..++..++.... .+..+.+
T Consensus 112 VGnLp~~~tEe~Lr~---------lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i-~GR~IkV 181 (612)
T TIGR01645 112 VGSISFELREDTIRR---------AFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML-GGRNIKV 181 (612)
T ss_pred EcCCCCCCCHHHHHH---------HHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE-ecceeee
Confidence 899988755555544 6667777776 332 2467799999999999999887652211 1111211
Q ss_pred cccCCCCC--cccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHH
Q 002873 174 YPISNGVG--TVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAART 246 (872)
Q Consensus 174 ~~l~n~~~--~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~ 246 (872)
....+... .............++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|.+
T Consensus 182 ~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 182 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 11110000 000011112234579999999999999999999999999999874 45689999999999999999
Q ss_pred HHHHhcCcccccceeeeeecC
Q 002873 247 AMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 247 Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
|+..||+..+.|+.|+|.++.
T Consensus 262 AI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecC
Confidence 999999999999999998754
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=6.1e-18 Score=175.52 Aligned_cols=161 Identities=23% Similarity=0.372 Sum_probs=132.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCC
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 271 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 271 (872)
...|||||+||+.++||+-|..||.+.|.|..|++. |+ .|.|.|+.....
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i----------~~--------------------e~~v~wa~~p~n 53 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI----------FD--------------------ELKVNWATAPGN 53 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceee----------hh--------------------hhccccccCccc
Confidence 446999999999999999999999999999998742 11 456666654433
Q ss_pred CCCcccc-ccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcE
Q 002873 272 PSEKDVN-QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR 345 (872)
Q Consensus 272 ~~~~~~~-~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~ 345 (872)
.+..... .--+||+.|...++.++||+.|.+||+|.++++ +.++||||||.|.+.++|+.||..|||..|++|.
T Consensus 54 Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 54 QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 3333333 346999999999999999999999999999876 5789999999999999999999999999999999
Q ss_pred EEEEecCCCcccch--------------------hhhcCChhccHHHHHHhhhccCC
Q 002873 346 IKLEPSRPGGARRN--------------------LMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 346 L~V~~s~p~~~r~~--------------------~~~ql~~~~tq~~l~~~f~~~Gs 382 (872)
|+-.|+..+..+.. |+.+++..++++.+|..|.+||.
T Consensus 134 IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~ 190 (321)
T KOG0148|consen 134 IRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP 190 (321)
T ss_pred eeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc
Confidence 99999987653321 66677777888999988888874
No 34
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.1e-17 Score=178.73 Aligned_cols=157 Identities=20% Similarity=0.443 Sum_probs=138.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002873 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
-|+|||+.|.+++.|+.||..|.+||+|++|. .+++++|||||+|+-++.|+-|++.+||..+.||.|+|.. |
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr--P 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR--P 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC--C
Confidence 48999999999999999999999999999997 5789999999999999999999999999999999999984 3
Q ss_pred CCCCCC---------ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHH
Q 002873 269 KDNPSE---------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALR 334 (872)
Q Consensus 269 k~~~~~---------~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~ 334 (872)
...+.. +.....+|||..+.++++++||+.+|+.||+|+.|.+. ...+|||||||.+..+-..|+.
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 322211 11234689999999999999999999999999999762 3468999999999999999999
Q ss_pred HhCCceeCCcEEEEEecC
Q 002873 335 ALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 335 ~LnG~~l~Gr~L~V~~s~ 352 (872)
.||=..|+|.-|+|..+-
T Consensus 271 sMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hcchhhcccceEeccccc
Confidence 999999999999986553
No 35
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=3e-17 Score=169.62 Aligned_cols=166 Identities=23% Similarity=0.425 Sum_probs=140.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCccc-c--cceeeeee
Q 002873 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPL-R--RRKLDIHF 265 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l-~--gr~L~V~~ 265 (872)
++|+|||+-|...-.|||++.+|..||.|.+|.+ .+.+||||||.|.+..+|..||..|+|..- - ...|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5799999999999999999999999999999974 577999999999999999999999998653 2 24566666
Q ss_pred cCCCCCC-------------------------------------------------------------------------
Q 002873 266 SIPKDNP------------------------------------------------------------------------- 272 (872)
Q Consensus 266 a~pk~~~------------------------------------------------------------------------- 272 (872)
+..++++
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 3221000
Q ss_pred --------------------------------------------------------------------------------
Q 002873 273 -------------------------------------------------------------------------------- 272 (872)
Q Consensus 273 -------------------------------------------------------------------------------- 272 (872)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ---------------------CCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCH
Q 002873 273 ---------------------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDV 326 (872)
Q Consensus 273 ---------------------~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~ 326 (872)
..+..+.+.|||..||.+..+.||.++|-+||.|.+.++ +..+|.||||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 000112358999999999999999999999999999854 678899999999999
Q ss_pred HHHHHHHHHhCCceeCCcEEEEEecCCCcccc
Q 002873 327 RAAEAALRALNRSDINGKRIKLEPSRPGGARR 358 (872)
Q Consensus 327 e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r~ 358 (872)
.+|+.||.+|||..|+-++|+|.+.+|+...|
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999987654
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.70 E-value=2e-16 Score=161.83 Aligned_cols=162 Identities=27% Similarity=0.446 Sum_probs=142.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHH----HhhccCCeEEEE--eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002873 191 EHPSRTLFVRNINSNVEDLELRS----LFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~----lFs~fG~I~~v~--~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
..+..||||.||+..+..++|++ +|++||+|.+|. .+.+.+|-|||.|.+.+.|-.|+++|+|..+.|++++|+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 45566999999999999999998 999999999987 367899999999999999999999999999999999999
Q ss_pred ecCCCCCCCC----------------------------------------------ccccccceeeeccCCccchhhHhh
Q 002873 265 FSIPKDNPSE----------------------------------------------KDVNQGTLVVFNLDASVSNDDLRQ 298 (872)
Q Consensus 265 ~a~pk~~~~~----------------------------------------------~~~~~~tLfV~NLp~~~TeedL~e 298 (872)
||..+.+.-. ......+||+.|||..++.+.|..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 9864421100 012345899999999999999999
Q ss_pred hhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeC-CcEEEEEecC
Q 002873 299 IFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDIN-GKRIKLEPSR 352 (872)
Q Consensus 299 ~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~-Gr~L~V~~s~ 352 (872)
+|.+|...++|+......+.|||+|.+...|..|...++|..|. .+.++|.+++
T Consensus 166 lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999988878899999999999999999999999887 8889888875
No 37
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=2.1e-15 Score=149.08 Aligned_cols=149 Identities=21% Similarity=0.318 Sum_probs=126.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCC--cccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK--HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~k--srG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
+.+++|||+|||.++-+.||.++|-+||.|+.|.+..+ .-.||||+|+++.+|+.||..-+|..+.|..|+|+++...
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45799999999999999999999999999999985443 3479999999999999999999999999999999997543
Q ss_pred CCCCC----------------------ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHH
Q 002873 270 DNPSE----------------------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVR 327 (872)
Q Consensus 270 ~~~~~----------------------~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e 327 (872)
..... .......|.|.+||++-+++||+++..+-|+|....+. ..|.+.|+|...|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~--rDg~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ--RDGVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee--cccceeeeeeehh
Confidence 21100 11123479999999999999999999999999988875 4569999999999
Q ss_pred HHHHHHHHhCCceeC
Q 002873 328 AAEAALRALNRSDIN 342 (872)
Q Consensus 328 ~A~kAl~~LnG~~l~ 342 (872)
+.+-|++.|+...+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999999876553
No 38
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.63 E-value=6.4e-16 Score=168.52 Aligned_cols=163 Identities=17% Similarity=0.374 Sum_probs=142.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002873 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
..++|||++|+++++++.|++.|.+||+|.+|.+ +++++||+||+|.+++...+++. ..-..|.++.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 6799999999999999999999999999999973 57899999999999999999987 55677899999999998
Q ss_pred CCCCCCCccc--cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCce
Q 002873 268 PKDNPSEKDV--NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSD 340 (872)
Q Consensus 268 pk~~~~~~~~--~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~ 340 (872)
++....+... ...+|||++|+.++++++|++.|.+||.|..+.+ +.+.++|+||.|.+++++.+++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8765544332 3568999999999999999999999998877743 45679999999999999999987 67789
Q ss_pred eCCcEEEEEecCCCccc
Q 002873 341 INGKRIKLEPSRPGGAR 357 (872)
Q Consensus 341 l~Gr~L~V~~s~p~~~r 357 (872)
|.|+.+.|..|.|+...
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 99999999999998643
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.62 E-value=2.7e-16 Score=176.84 Aligned_cols=164 Identities=23% Similarity=0.368 Sum_probs=141.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002873 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
..++..+|+|+-.|+..+++.+|.++|+.+|+|++|+ ....++|.|||+|.|.+....|+. |.|+.+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 4577889999999999999999999999999999987 356799999999999999999996 9999999999999
Q ss_pred eecCCCCCCCC--------c--cccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHH
Q 002873 264 HFSIPKDNPSE--------K--DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRA 328 (872)
Q Consensus 264 ~~a~pk~~~~~--------~--~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~ 328 (872)
+.....++... + ..+-..|||+||.+++++++|+.+|++||.|..|.+ ++.++|||||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 87543322100 0 011223999999999999999999999999999954 57789999999999999
Q ss_pred HHHHHHHhCCceeCCcEEEEEecCC
Q 002873 329 AEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 329 A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
|.+|+..|||.+|.|+.|+|..-.-
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeee
Confidence 9999999999999999999876543
No 40
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.60 E-value=1.5e-12 Score=142.46 Aligned_cols=159 Identities=23% Similarity=0.370 Sum_probs=131.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEE----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002873 193 PSRTLFVRNINSNVEDLELRSLFE-QYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs-~fG~I~~v~----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
..|.+||.|||+++...+|++||. +.|+|..|. ..++.||||.|+|+++|.+++|++.|+...+.|++|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 357799999999999999999996 679999987 368999999999999999999999999999999999986421
Q ss_pred CC----------------------------------------------CC--CCC-------------------------
Q 002873 268 PK----------------------------------------------DN--PSE------------------------- 274 (872)
Q Consensus 268 pk----------------------------------------------~~--~~~------------------------- 274 (872)
.. +. .+.
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 10 00 000
Q ss_pred --------ccccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 002873 275 --------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (872)
Q Consensus 275 --------~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~ 342 (872)
......++||.||.+.+....|++.|.-.|.|..|.+ .+.++|++.|+|..+-+|..||..|++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 0001247899999999999999999999999998843 4578899999999999999999999987777
Q ss_pred CcEEEEEec
Q 002873 343 GKRIKLEPS 351 (872)
Q Consensus 343 Gr~L~V~~s 351 (872)
.++..+...
T Consensus 283 ~~~~~~Rl~ 291 (608)
T KOG4212|consen 283 DRRMTVRLD 291 (608)
T ss_pred cccceeecc
Confidence 777777664
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.52 E-value=6.8e-14 Score=157.74 Aligned_cols=161 Identities=22% Similarity=0.345 Sum_probs=129.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
.+-+.|||+||-.++++++|+.+|++||.|..|.+ ++.++||+||+|.+.++|++|+..|||..|.|+.|+|...
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 34455999999999999999999999999998872 7889999999999999999999999999999999998653
Q ss_pred CCCCCCC--------------------------------------------------------------------Ccc--
Q 002873 267 IPKDNPS--------------------------------------------------------------------EKD-- 276 (872)
Q Consensus 267 ~pk~~~~--------------------------------------------------------------------~~~-- 276 (872)
..+-... .+.
T Consensus 356 ~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (549)
T KOG0147|consen 356 TERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADA 435 (549)
T ss_pred eeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccc
Confidence 2110000 000
Q ss_pred -----ccccceeeeccCC--ccc--------hhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCcee
Q 002873 277 -----VNQGTLVVFNLDA--SVS--------NDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI 341 (872)
Q Consensus 277 -----~~~~tLfV~NLp~--~~T--------eedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l 341 (872)
+.+.++.++|+=. ..| .+++.+.+.+||+|..|.+...+-|+.||.|.+.++|..|+++|||.+|
T Consensus 436 ~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF 515 (549)
T KOG0147|consen 436 SPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWF 515 (549)
T ss_pred ccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhh
Confidence 1122444555411 111 3778889999999999999988889999999999999999999999999
Q ss_pred CCcEEEEEecC
Q 002873 342 NGKRIKLEPSR 352 (872)
Q Consensus 342 ~Gr~L~V~~s~ 352 (872)
+|+.|...|-.
T Consensus 516 ~gr~Ita~~~~ 526 (549)
T KOG0147|consen 516 AGRMITAKYLP 526 (549)
T ss_pred ccceeEEEEee
Confidence 99999988753
No 42
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.49 E-value=6.6e-14 Score=156.41 Aligned_cols=106 Identities=22% Similarity=0.359 Sum_probs=95.8
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002873 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||+++|+++|+++|+.||.|++|++ +++++|||||+|.++++|++|++.|+|..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 35679999999999999999999999999999976 3567899999999999999999999999999999999999
Q ss_pred CCCc----ccchhhhcCChhccHHHHHHhhhccCC
Q 002873 352 RPGG----ARRNLMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 352 ~p~~----~r~~~~~ql~~~~tq~~l~~~f~~~Gs 382 (872)
++.. ..+.++.+|+..+++++|+++|.+||.
T Consensus 185 ~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~ 219 (346)
T TIGR01659 185 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQ 219 (346)
T ss_pred cccccccccceeEEeCCCCcccHHHHHHHHHhcCC
Confidence 8753 234588999999999999999999984
No 43
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=6.3e-14 Score=144.86 Aligned_cols=148 Identities=26% Similarity=0.433 Sum_probs=128.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCC--
Q 002873 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP-- 272 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~-- 272 (872)
..+||++||+.+.+.+|..+|..||.|..+.+ ..||+||+|.+..+|..|+..|+++.|.+..+.|+|+......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 46899999999999999999999999999864 4689999999999999999999999999988999998742100
Q ss_pred --------------CCccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC
Q 002873 273 --------------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR 338 (872)
Q Consensus 273 --------------~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG 338 (872)
.........|+|.|+...+.+.+|.+.|.++|.+..... ..+++||+|...++|.+|+..|+|
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 001123457889999999999999999999999955544 578999999999999999999999
Q ss_pred ceeCCcEEEE
Q 002873 339 SDINGKRIKL 348 (872)
Q Consensus 339 ~~l~Gr~L~V 348 (872)
..+.|+.|++
T Consensus 156 ~~~~~~~l~~ 165 (216)
T KOG0106|consen 156 KKLNGRRISV 165 (216)
T ss_pred hhhcCceeee
Confidence 9999999999
No 44
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.43 E-value=7.5e-13 Score=134.61 Aligned_cols=149 Identities=21% Similarity=0.327 Sum_probs=117.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCCC----cccEEEEEeCCHHHHHHHHHHhcCcccc---cceeee
Q 002873 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY--TACK----HRGFVMISYYDIRAARTAMRALQNKPLR---RRKLDI 263 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~--~~~k----srG~AFVeF~d~e~A~~Ai~~Lng~~l~---gr~L~V 263 (872)
.-|||||.+||.++...||..||..|-..+.+. .+.+ .+-+|||.|.+..+|..|+.+|||.+|. +..|.|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 469999999999999999999999986554443 2222 3369999999999999999999999985 678888
Q ss_pred eecCCCCCCC-----------------------C----------------------------cc----------------
Q 002873 264 HFSIPKDNPS-----------------------E----------------------------KD---------------- 276 (872)
Q Consensus 264 ~~a~pk~~~~-----------------------~----------------------------~~---------------- 276 (872)
++++...+.. . .+
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 8764210000 0 00
Q ss_pred ---------------ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCC-CCccEEEEEECCHHHHHHHHHHhCCce
Q 002873 277 ---------------VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDVRAAEAALRALNRSD 340 (872)
Q Consensus 277 ---------------~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~-~skGfaFVeF~~~e~A~kAl~~LnG~~ 340 (872)
....||||-||..+++|++|+++|+.|-....+++.. ..+..+||+|++.+.|..|+..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 0013899999999999999999999998777766643 345689999999999999999999886
Q ss_pred e
Q 002873 341 I 341 (872)
Q Consensus 341 l 341 (872)
|
T Consensus 273 ~ 273 (284)
T KOG1457|consen 273 L 273 (284)
T ss_pred e
Confidence 6
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.42 E-value=6e-13 Score=131.22 Aligned_cols=79 Identities=25% Similarity=0.472 Sum_probs=72.4
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
..++|||+||++.+++++|+++|++||.|++|++ +++++|||||+|.+.++|++|++.||+..|+|++|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 3568999999999999999999999999999976 35679999999999999999999999999999999999997
Q ss_pred CCcc
Q 002873 353 PGGA 356 (872)
Q Consensus 353 p~~~ 356 (872)
++..
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6543
No 46
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.41 E-value=1.7e-12 Score=127.99 Aligned_cols=81 Identities=23% Similarity=0.431 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002873 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
...+++|||+|||+++++++|+++|++||+|.+|.+ +++++|||||+|.+.++|++|++.|++..|.|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 456789999999999999999999999999999874 467899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002873 266 SIPKDN 271 (872)
Q Consensus 266 a~pk~~ 271 (872)
+.++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 876543
No 47
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.36 E-value=1.6e-11 Score=132.07 Aligned_cols=165 Identities=15% Similarity=0.264 Sum_probs=133.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EE----eCCCcccEEEEEeCCHHHHHHHHHHhcCccccc
Q 002873 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--------LY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRR 258 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~--------v~----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~g 258 (872)
..-++.|||.|||.++|.+|+.++|++||-|.+ |+ ..+.-+|=|.+.|.-.+++.-|++.|++..|+|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 445677999999999999999999999998754 22 257788999999999999999999999999999
Q ss_pred ceeeeeecCCC---------C-C--------------------C----CCccccccceeeeccCC----ccc-------h
Q 002873 259 RKLDIHFSIPK---------D-N--------------------P----SEKDVNQGTLVVFNLDA----SVS-------N 293 (872)
Q Consensus 259 r~L~V~~a~pk---------~-~--------------------~----~~~~~~~~tLfV~NLp~----~~T-------e 293 (872)
+.|+|+.|.-. . . + ..+....+||.++|+=. ..+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 99999876311 0 0 0 00112346899998732 122 4
Q ss_pred hhHhhhhcccCCeEEEEe-CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002873 294 DDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 294 edL~e~Fs~fG~V~~vri-~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
++|++-+++||.|..|.+ ..++.|.+-|.|.+.++|..||+.|+|+.++||+|..+...-+.
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 778888999999999976 45678999999999999999999999999999999988776543
No 48
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.36 E-value=1.4e-11 Score=134.49 Aligned_cols=160 Identities=25% Similarity=0.330 Sum_probs=136.3
Q ss_pred CcEEEEcCCC-CCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCC--
Q 002873 194 SRTLFVRNIN-SNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD-- 270 (872)
Q Consensus 194 srtLfV~NLP-~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~-- 270 (872)
+..|.|.||. ..+|.+.|..+|.-||+|.+|++....+--|.|+|.|...|+-|+..|+|.++.|++|+|.+++-..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 5889999996 5689999999999999999999877777899999999999999999999999999999999875321
Q ss_pred ----CCCC--------------------c-----cccccceeeeccCCccchhhHhhhhcccCCe-EEEEeCCCCccEEE
Q 002873 271 ----NPSE--------------------K-----DVNQGTLVVFNLDASVSNDDLRQIFGAYGEV-KEIRETPHKRHHKF 320 (872)
Q Consensus 271 ----~~~~--------------------~-----~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V-~~vri~~~skGfaF 320 (872)
...+ + -....+|.+.|+|.++++|+|++.|..-|.. +-.+..++.+.+++
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 1000 0 0123589999999999999999999988765 55566777788999
Q ss_pred EEECCHHHHHHHHHHhCCceeCC-cEEEEEecCC
Q 002873 321 IEFYDVRAAEAALRALNRSDING-KRIKLEPSRP 353 (872)
Q Consensus 321 VeF~~~e~A~kAl~~LnG~~l~G-r~L~V~~s~p 353 (872)
+.+.++|+|..|+-.++.+.+++ +.|+|+|++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999998875 5999999875
No 49
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.33 E-value=8.8e-12 Score=136.09 Aligned_cols=165 Identities=26% Similarity=0.417 Sum_probs=135.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccE-EEEEeCCHHHHHHHHHHhcCccccc--ceeeeeecCC
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIP 268 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~-AFVeF~d~e~A~~Ai~~Lng~~l~g--r~L~V~~a~p 268 (872)
.+--+++|.|+-+-++-+-|..+|++||.|..|.+..+..+| |.|+|.+.+.|..|..+|+|+.|.. +.|+|.|+.-
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 344578899999999999999999999999999877777787 9999999999999999999998753 4566665421
Q ss_pred ----------CCC-------CCC--------------------------------------c--cc--cccceeeeccCC
Q 002873 269 ----------KDN-------PSE--------------------------------------K--DV--NQGTLVVFNLDA 289 (872)
Q Consensus 269 ----------k~~-------~~~--------------------------------------~--~~--~~~tLfV~NLp~ 289 (872)
+.+ +.. . .. ....|.|.||..
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 100 000 0 00 134678888876
Q ss_pred c-cchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002873 290 S-VSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 290 ~-~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
. +|.+.|..+|..||+|.+|++--+++-.|.|+|.|...|+-|+..|+|..|.|++|+|.+++-...
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 4 899999999999999999998777778999999999999999999999999999999999986543
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=3e-11 Score=129.90 Aligned_cols=160 Identities=17% Similarity=0.223 Sum_probs=107.6
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccccc--cCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCC
Q 002873 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDL--FDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISN 178 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~dieedl--f~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n 178 (872)
.|...|.--+|.+....+-+|-.| ++. ...|. -..+|..+|+++-.|.+..+.+.++..-.+.. .+.+-+..|
T Consensus 118 VGSIsfEl~EDtiR~AF~PFGPIK---SIn-MSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGR-NiKVgrPsN 192 (544)
T KOG0124|consen 118 VGSISFELREDTIRRAFDPFGPIK---SIN-MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR-NIKVGRPSN 192 (544)
T ss_pred eeeeEEEechHHHHhhccCCCCcc---eee-cccccccccccceEEEEEeCcHHHHHHHHHhccccccCc-cccccCCCC
Confidence 466666544555555455555544 111 11111 22356689999999999999998884333222 121111111
Q ss_pred CCCc--ccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHh
Q 002873 179 GVGT--VAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRAL 251 (872)
Q Consensus 179 ~~~~--~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~L 251 (872)
-.-. .-..-....+.-.+|||..+.++.+|+||+.+|+.||+|..|.+ ...++||+||+|.+..+...|+..+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 1000 00000012345679999999999999999999999999999983 4679999999999999999999999
Q ss_pred cCcccccceeeeee
Q 002873 252 QNKPLRRRKLDIHF 265 (872)
Q Consensus 252 ng~~l~gr~L~V~~ 265 (872)
|-..+.|.-|+|..
T Consensus 273 NlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGK 286 (544)
T ss_pred chhhcccceEeccc
Confidence 99999999888855
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.27 E-value=8.2e-12 Score=105.81 Aligned_cols=66 Identities=35% Similarity=0.609 Sum_probs=61.5
Q ss_pred eeeeccCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEE
Q 002873 282 LVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (872)
Q Consensus 282 LfV~NLp~~~TeedL~e~Fs~fG~V~~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~ 347 (872)
|||+|||.++++++|+++|++||.|..+.+. +..+++|||+|.+.++|++|++.|+|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999998653 45689999999999999999999999999999986
No 52
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.23 E-value=2.5e-11 Score=102.79 Aligned_cols=66 Identities=29% Similarity=0.591 Sum_probs=61.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002873 197 LFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 197 LfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
|||+|||.++++++|+++|++||.|..+.+ .+..+++|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988874 356889999999999999999999999999999875
No 53
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2.1e-11 Score=120.55 Aligned_cols=77 Identities=26% Similarity=0.506 Sum_probs=73.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002873 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
-.++|||+||+..+++.||..+|..||+|..|.+.....|||||+|+++.+|+.|+..|+|+.|.|..+.|+.+.-.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 36899999999999999999999999999999988888999999999999999999999999999999999998543
No 54
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=2.1e-11 Score=120.52 Aligned_cols=77 Identities=31% Similarity=0.472 Sum_probs=72.6
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002873 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
.++|||+||+..+++.||..+|..||.|..|-+...+.|||||||+++.+|+.|+..|+|+.|.|..|+|+++.-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 57899999999999999999999999999998887889999999999999999999999999999999999987543
No 55
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.18 E-value=1.7e-10 Score=120.35 Aligned_cols=119 Identities=26% Similarity=0.442 Sum_probs=101.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002873 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
.++|||+|||.++++++|+++|.+||.|..+.+ ++.++|||||+|.+.++|..|+..+++..|.|++|.|.+..+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 699999999999999999999999999987762 578999999999999999999999999999999999999542
Q ss_pred ----CCCCC----------------CccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC
Q 002873 269 ----KDNPS----------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET 312 (872)
Q Consensus 269 ----k~~~~----------------~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~ 312 (872)
+.... ........+++.+++..++..++...|..+|.+..+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 21111 011134579999999999999999999999999777653
No 56
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=5.2e-11 Score=127.30 Aligned_cols=77 Identities=19% Similarity=0.356 Sum_probs=71.5
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe---CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri---~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
..++|+|.|||+...+-||+.+|.+||+|.+|.| ...+||||||+|++.++|++|..+|||..+.||+|+|..+.++
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 3568999999999999999999999999999976 3457999999999999999999999999999999999999875
No 57
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.16 E-value=6.5e-10 Score=122.24 Aligned_cols=70 Identities=23% Similarity=0.311 Sum_probs=64.3
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002873 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri--~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
++|+|+|||+++|++-|++-|..||.|.++++ .++++ +.|.|.++++|++|+..|+|..|+|+.|+|.+.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gksk--GVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSK--GVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhccCCcc--ceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 48999999999999999999999999999988 45555 499999999999999999999999999999873
No 58
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.16 E-value=2.2e-10 Score=128.34 Aligned_cols=157 Identities=17% Similarity=0.286 Sum_probs=123.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE---eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCC
Q 002873 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~---~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 270 (872)
.-.|-+++||+++|++||.++|+.++ |+.+. .+++..|-|||+|.+.+++++|++ .+...+..+-|.|--+.+.+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcc
Confidence 45778899999999999999999996 55554 457889999999999999999998 67788888888886654433
Q ss_pred CC-------CCccccccceeeeccCCccchhhHhhhhcccCCeEE-E----EeCCCCccEEEEEECCHHHHHHHHHHhCC
Q 002873 271 NP-------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE-I----RETPHKRHHKFIEFYDVRAAEAALRALNR 338 (872)
Q Consensus 271 ~~-------~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~-v----ri~~~skGfaFVeF~~~e~A~kAl~~LnG 338 (872)
.. .........|.+++||+.||++||.++|+..-.|.. | ...+++.|-|||+|++.+.|++|+. -|.
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhr 166 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHR 166 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHH
Confidence 21 111134568999999999999999999998754444 2 1134567899999999999999998 356
Q ss_pred ceeCCcEEEEEecCC
Q 002873 339 SDINGKRIKLEPSRP 353 (872)
Q Consensus 339 ~~l~Gr~L~V~~s~p 353 (872)
..|.-+-|.|-.+..
T Consensus 167 e~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 167 ENIGHRYIEVFRSSR 181 (510)
T ss_pred HhhccceEEeehhHH
Confidence 677777888766643
No 59
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.15 E-value=7.9e-11 Score=117.15 Aligned_cols=129 Identities=22% Similarity=0.307 Sum_probs=104.4
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
...||||+||+..++++-|.++|-+.|.|..+++ +...+|||||||.++|+|+-|++-||...|.||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 3569999999999999999999999999999965 44568999999999999999999999999999999999887
Q ss_pred CCc-----ccchhhhcCChhccHHHHHHhhhccCCCCCCCCCCCccccCCCcccCCCCCCCCCCCCCCCCC
Q 002873 353 PGG-----ARRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSP 418 (872)
Q Consensus 353 p~~-----~r~~~~~ql~~~~tq~~l~~~f~~~Gsp~~~spp~~~s~~gsp~~~~~m~~~s~s~g~g~v~p 418 (872)
... ..+.++++|..++++.-+...|+++|.-.. +|... ....++.+++||++.-
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~--~P~i~----------rd~~tg~~~~~g~i~~ 146 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLIS--PPKIM----------RDPDTGNPKGFGFINY 146 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhcccccc--CCccc----------ccccCCCCCCCeEEec
Confidence 322 133478999999999999999999996432 23221 1223456777887754
No 60
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=6.6e-11 Score=111.51 Aligned_cols=76 Identities=26% Similarity=0.463 Sum_probs=70.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002873 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
.+.++||||+||+..++|+.|.+||+++|+|+.|.+ +....|||||+|.+.++|..|++-++++.+..++|.+.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 356899999999999999999999999999999962 445679999999999999999999999999999999998
Q ss_pred c
Q 002873 266 S 266 (872)
Q Consensus 266 a 266 (872)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 61
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=7.9e-11 Score=111.01 Aligned_cols=81 Identities=21% Similarity=0.324 Sum_probs=71.9
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEE-----eCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vr-----i~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
.++||||+||.+.++||+|.++|+++|+|+.|. .+....|||||+|.+.++|..|++.++|..|+.++|++.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 467999999999999999999999999999984 355678999999999999999999999999999999999976
Q ss_pred CCcccc
Q 002873 353 PGGARR 358 (872)
Q Consensus 353 p~~~r~ 358 (872)
-=.+.+
T Consensus 115 GF~eGR 120 (153)
T KOG0121|consen 115 GFVEGR 120 (153)
T ss_pred cchhhh
Confidence 433333
No 62
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=2.7e-10 Score=130.50 Aligned_cols=165 Identities=16% Similarity=0.313 Sum_probs=129.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002873 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
.......+||++||..+++.+++++.+.||++.... .++-++||||.+|.++.....|+..|+|+.+.+++|.|+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 445668999999999999999999999999987665 246799999999999999999999999999999999999
Q ss_pred ecCCCCCCCCc--------------------cccccceeeeccCC--cc-c-------hhhHhhhhcccCCeEEEEeCCC
Q 002873 265 FSIPKDNPSEK--------------------DVNQGTLVVFNLDA--SV-S-------NDDLRQIFGAYGEVKEIRETPH 314 (872)
Q Consensus 265 ~a~pk~~~~~~--------------------~~~~~tLfV~NLp~--~~-T-------eedL~e~Fs~fG~V~~vri~~~ 314 (872)
.+.+....... ...+..|.+.|+=. ++ . -|+++..|.+||.|..|.+...
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 87654321110 11122344444311 11 1 2567788899999999976322
Q ss_pred --------CccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002873 315 --------KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 315 --------skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
..|..||||.+.+++++|..+|+|..++|++|...|....
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 3577999999999999999999999999999999987543
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.12 E-value=6e-11 Score=125.05 Aligned_cols=99 Identities=25% Similarity=0.398 Sum_probs=92.8
Q ss_pred ceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC--cccc
Q 002873 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG--GARR 358 (872)
Q Consensus 281 tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~--~~r~ 358 (872)
+|||+|||..+++.+|+.+|++||+|.+|+|. |.||||..++...|+.||+.|+|+.|+|..|.|+-++.+ ...+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv---KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stk 80 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV---KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTK 80 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee---cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccc
Confidence 69999999999999999999999999999986 689999999999999999999999999999999999877 5556
Q ss_pred hhhhcCChhccHHHHHHhhhccCC
Q 002873 359 NLMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 359 ~~~~ql~~~~tq~~l~~~f~~~Gs 382 (872)
..+.|+....+.++++..|.+||.
T Consensus 81 l~vgNis~tctn~ElRa~fe~ygp 104 (346)
T KOG0109|consen 81 LHVGNISPTCTNQELRAKFEKYGP 104 (346)
T ss_pred cccCCCCccccCHHHhhhhcccCC
Confidence 688999999999999999999993
No 64
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=2.3e-10 Score=104.24 Aligned_cols=79 Identities=28% Similarity=0.468 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002873 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~--~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
..-++.|||+|||+++|.++..++|.+||.|+.|++ +...+|.|||.|++..+|++|++.|.|..+.++.|.|.|..+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 345789999999999999999999999999999985 566899999999999999999999999999999999998765
Q ss_pred C
Q 002873 269 K 269 (872)
Q Consensus 269 k 269 (872)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 4
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=3e-10 Score=117.59 Aligned_cols=80 Identities=21% Similarity=0.403 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002873 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...+..+|-|.||+.+++|++|++||.+||.|.+|+ .++.+||||||.|.+.++|.+||+.|+|.-+..-.|.|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 345678999999999999999999999999999997 478899999999999999999999999999999999999
Q ss_pred ecCCC
Q 002873 265 FSIPK 269 (872)
Q Consensus 265 ~a~pk 269 (872)
|+.|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99875
No 66
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=4.5e-10 Score=102.40 Aligned_cols=100 Identities=20% Similarity=0.367 Sum_probs=82.7
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri--~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
..+.|||+|||+++|.|+..++|.+||.|+.||+ +...+|-|||.|++..+|.+|++.|+|..+.++.|.|-+..+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 3568999999999999999999999999999998 44568999999999999999999999999999999999998876
Q ss_pred ccchhhhcCChhccHHHHHHhhhccC
Q 002873 356 ARRNLMQQLNQELEQDEARGFRHQVG 381 (872)
Q Consensus 356 ~r~~~~~ql~~~~tq~~l~~~f~~~G 381 (872)
..+... ....++++..+-.+||
T Consensus 97 ~~~~~~----~~k~~~~l~~~~~ky~ 118 (124)
T KOG0114|consen 97 AFKLMD----SRKAREELSILKEKYG 118 (124)
T ss_pred HHHHHH----hHHhhhHHHHHHHHhc
Confidence 544322 1223445555555666
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.09 E-value=2.3e-10 Score=121.52 Aligned_cols=74 Identities=20% Similarity=0.404 Sum_probs=68.1
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEeCC--CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002873 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~--~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
.++|||+||++.+++++|+++|+.||+|++|++.. ..+|||||+|.+.++|..||. |+|..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46899999999999999999999999999998743 357999999999999999996 999999999999999764
No 68
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2e-10 Score=118.86 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=72.5
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
...+|.|.||+.++++++|+++|.+||.|..|.+ ++.++|||||.|.+.++|++||+.|||+-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4578999999999999999999999999999854 78899999999999999999999999999999999999999
Q ss_pred CC
Q 002873 353 PG 354 (872)
Q Consensus 353 p~ 354 (872)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.09 E-value=4.2e-10 Score=119.58 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=68.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC--CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002873 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~--~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
.++|||+|||+.+++++|+++|+.||+|.+|.+. +..+|||||+|.+.++|+.|+. |+|..|.|++|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 5899999999999999999999999999999852 3368999999999999999996 9999999999999997543
No 70
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=1.4e-10 Score=131.59 Aligned_cols=163 Identities=27% Similarity=0.385 Sum_probs=131.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002873 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
...+.++|+|-|||..|++++|+.+|+.||+|+.|+.+...+|.+||+|+|.++|++|+++|++..+.|+.|........
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 36778999999999999999999999999999999988889999999999999999999999999999988873221100
Q ss_pred C------------------CCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHH
Q 002873 270 D------------------NPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEA 331 (872)
Q Consensus 270 ~------------------~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~k 331 (872)
. ...........+|+- |++..+..-++.+|..+|.+.. +.++.....-|++|.+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~ 228 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAF 228 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhh
Confidence 0 000111123455555 9999999888899999999988 8888777789999999999977
Q ss_pred HHHHhCCceeCCcEEEEEecCCCc
Q 002873 332 ALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 332 Al~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
++..+ |..+.+....+.++.+++
T Consensus 229 ~~~~~-G~~~s~~~~v~t~S~~~g 251 (549)
T KOG4660|consen 229 SEPRG-GFLISNSSGVITFSGPGG 251 (549)
T ss_pred cccCC-ceecCCCCceEEecCCCc
Confidence 77644 677777777777877744
No 71
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.05 E-value=4.8e-10 Score=95.95 Aligned_cols=66 Identities=32% Similarity=0.616 Sum_probs=58.8
Q ss_pred eeeeccCCccchhhHhhhhcccCCeEEEEeCC----CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEE
Q 002873 282 LVVFNLDASVSNDDLRQIFGAYGEVKEIRETP----HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (872)
Q Consensus 282 LfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~----~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~ 347 (872)
|||+|||+++++++|+++|+.||.|..+++.. ..+++|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999997643 3479999999999999999999999999999985
No 72
>smart00362 RRM_2 RNA recognition motif.
Probab=99.05 E-value=6e-10 Score=93.02 Aligned_cols=69 Identities=30% Similarity=0.606 Sum_probs=63.2
Q ss_pred ceeeeccCCccchhhHhhhhcccCCeEEEEeCCC---CccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002873 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH---KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 281 tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~---skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
+|+|+|||..+++++|+++|++||.|..+++... .+++|||+|.+.++|++|++.++|..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999976533 47999999999999999999999999999999874
No 73
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=4.9e-10 Score=119.98 Aligned_cols=79 Identities=22% Similarity=0.401 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002873 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
....++|+|.|||+..-|-||+.+|++||+|.+|.+ ..-+|||+||+|++.++|++|..+|+|..+.||+|.|..+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 344689999999999999999999999999999873 46699999999999999999999999999999999999987
Q ss_pred CC
Q 002873 268 PK 269 (872)
Q Consensus 268 pk 269 (872)
++
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 65
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.03 E-value=7e-10 Score=94.92 Aligned_cols=66 Identities=23% Similarity=0.536 Sum_probs=58.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEeC----CCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002873 197 LFVRNINSNVEDLELRSLFEQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 197 LfV~NLP~~vteeeLr~lFs~fG~I~~v~~~----~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
|||+|||+++++++|+++|+.||.|..+.+. +..+++|||+|.+.++|++|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999988742 34689999999999999999999998999999874
No 75
>PLN03213 repressor of silencing 3; Provisional
Probab=99.01 E-value=6.6e-10 Score=123.52 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=87.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC-CCcccEEEEEeCCH--HHHHHHHHHhcCcccccceeeeeecCC
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA-CKHRGFVMISYYDI--RAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~-~ksrG~AFVeF~d~--e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
....+|||+||++.+++++|+.+|..||.|.+|.+. ...||||||+|... .++.+||..|+|..++|+.|+|..+.|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 446899999999999999999999999999999742 23489999999987 789999999999999999999998866
Q ss_pred CCC-------CCCccccccceeeeccCCc-cchhhHhhhhcccCCeEEEEeC
Q 002873 269 KDN-------PSEKDVNQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRET 312 (872)
Q Consensus 269 k~~-------~~~~~~~~~tLfV~NLp~~-~TeedL~e~Fs~fG~V~~vri~ 312 (872)
.-. .........++. |+.. .....|+-+|-+.++|+.+-+.
T Consensus 88 ~YLeRLkrEReea~s~~~~~~k---l~k~~~e~~qLnifFPrLrKvKslPfs 136 (759)
T PLN03213 88 HYLARLKREWEAASSTSDNTIK---APSDSPPATHLNIFFPRLRKVKAMPLS 136 (759)
T ss_pred HHHHHHHHHHHHhhcccccccc---ccccCCccceeeEeccccccccccccC
Confidence 410 000000111211 1221 3345677788888888877543
No 76
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.01 E-value=2.4e-10 Score=115.46 Aligned_cols=76 Identities=36% Similarity=0.569 Sum_probs=70.4
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002873 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
..+|.|-||.+.|+.++|+.+|++||.|-+|.| +..++|||||.|.+..+|+.|+++|+|.+|+|+.|.|++++=
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 457999999999999999999999999999965 567899999999999999999999999999999999998864
Q ss_pred C
Q 002873 354 G 354 (872)
Q Consensus 354 ~ 354 (872)
+
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 3
No 77
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.01 E-value=1.1e-09 Score=90.10 Aligned_cols=56 Identities=36% Similarity=0.612 Sum_probs=51.5
Q ss_pred HhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002873 296 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 296 L~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
|+++|++||+|+.+.+..+.+++|||+|.+.++|++|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999987666799999999999999999999999999999999986
No 78
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.01 E-value=3.3e-09 Score=115.03 Aligned_cols=173 Identities=21% Similarity=0.309 Sum_probs=135.8
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHh--cCccccccee
Q 002873 184 AGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL--QNKPLRRRKL 261 (872)
Q Consensus 184 ~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~L--ng~~l~gr~L 261 (872)
...++....++-.|.|++|-..++|.+|.+-.+.||.|..+.. .+.+..|.|+|+|.+.|+.++.-- +...+.|+.-
T Consensus 21 ~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 21 DNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred cCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchh
Confidence 3455666778889999999999999999999999999998854 467788999999999999998632 3344667777
Q ss_pred eeeecCCCCCCC---Cccccccceee--eccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHh
Q 002873 262 DIHFSIPKDNPS---EKDVNQGTLVV--FNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL 336 (872)
Q Consensus 262 ~V~~a~pk~~~~---~~~~~~~tLfV--~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~L 336 (872)
.+.|+..+.-.. +.......|.+ -|--+.+|.+-|..++...|+|.+|-|..+..-.|.|||++.+.|++|..+|
T Consensus 100 l~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~al 179 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAAL 179 (494)
T ss_pred hcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhc
Confidence 777774432111 11122334443 4545678999999999999999999887666567999999999999999999
Q ss_pred CCceeC-C-cEEEEEecCCCccc
Q 002873 337 NRSDIN-G-KRIKLEPSRPGGAR 357 (872)
Q Consensus 337 nG~~l~-G-r~L~V~~s~p~~~r 357 (872)
||..|. | ++|+|+|++|..-+
T Consensus 180 NGADIYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 180 NGADIYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred ccccccccceeEEEEecCcceee
Confidence 999875 4 68999999997644
No 79
>PLN03213 repressor of silencing 3; Provisional
Probab=98.99 E-value=5.9e-10 Score=123.88 Aligned_cols=78 Identities=26% Similarity=0.344 Sum_probs=70.0
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCC-CCccEEEEEECCH--HHHHHHHHHhCCceeCCcEEEEEecCC
Q 002873 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDV--RAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~-~skGfaFVeF~~~--e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
....+|||+||++.+++++|+.+|..||.|++|.+.. ..||||||+|.+. .++.+||..|||.++.|+.|+|..++|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3456899999999999999999999999999997632 2389999999987 789999999999999999999999987
Q ss_pred C
Q 002873 354 G 354 (872)
Q Consensus 354 ~ 354 (872)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 5
No 80
>smart00362 RRM_2 RNA recognition motif.
Probab=98.98 E-value=1.8e-09 Score=90.07 Aligned_cols=69 Identities=30% Similarity=0.566 Sum_probs=62.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC---CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002873 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 196 tLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~---~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
+|||+|||..+++++|+++|++||+|..+.+. +..+|+|||+|.+.++|++|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999988743 3357999999999999999999999999999988763
No 81
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.98 E-value=7.6e-10 Score=111.94 Aligned_cols=79 Identities=27% Similarity=0.466 Sum_probs=72.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002873 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
.......+|.|-||-+.++.++|+.+|++||.|.+|++ +..++|||||.|.+..+|+.|+++|+|..|.|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34455689999999999999999999999999999984 6789999999999999999999999999999999999
Q ss_pred eecC
Q 002873 264 HFSI 267 (872)
Q Consensus 264 ~~a~ 267 (872)
+++.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 9875
No 82
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=1.5e-09 Score=115.03 Aligned_cols=78 Identities=26% Similarity=0.474 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002873 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...+-+||||.-|+++++|..|+..|+.||+|+.|. ++++++|||||+|.+..+...|.+..+|.+|.|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 346789999999999999999999999999999886 589999999999999999999999999999999999998
Q ss_pred ecC
Q 002873 265 FSI 267 (872)
Q Consensus 265 ~a~ 267 (872)
+..
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 754
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=1.5e-09 Score=115.22 Aligned_cols=90 Identities=30% Similarity=0.429 Sum_probs=78.8
Q ss_pred cCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEE-----eCCCCccEEEEEECCHHHHHHHHHHhCCce
Q 002873 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSD 340 (872)
Q Consensus 266 a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vr-----i~~~skGfaFVeF~~~e~A~kAl~~LnG~~ 340 (872)
..|..++....-.-+||||.-|+.+++|.+|+..|+.||.|+.|+ ++++++|||||+|+++.+..+|.+..+|..
T Consensus 88 wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~ 167 (335)
T KOG0113|consen 88 WDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK 167 (335)
T ss_pred cCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce
Confidence 345555544455678999999999999999999999999999995 478999999999999999999999999999
Q ss_pred eCCcEEEEEecCCCc
Q 002873 341 INGKRIKLEPSRPGG 355 (872)
Q Consensus 341 l~Gr~L~V~~s~p~~ 355 (872)
|+|+.|.|.+-+-+.
T Consensus 168 Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 168 IDGRRILVDVERGRT 182 (335)
T ss_pred ecCcEEEEEeccccc
Confidence 999999999876544
No 84
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=6.5e-10 Score=114.77 Aligned_cols=80 Identities=26% Similarity=0.376 Sum_probs=69.7
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002873 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
+..-++|||++|++.+..|+|++.|++||+|+++.+ ++++||||||+|.|.++|.+|++..| -.|+||+..|.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccch
Confidence 334578999999999999999999999999999744 67899999999999999999998543 689999999988
Q ss_pred cCCCcc
Q 002873 351 SRPGGA 356 (872)
Q Consensus 351 s~p~~~ 356 (872)
+.-++.
T Consensus 88 A~lg~~ 93 (247)
T KOG0149|consen 88 ASLGGK 93 (247)
T ss_pred hhhcCc
Confidence 876544
No 85
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=9.5e-10 Score=109.48 Aligned_cols=78 Identities=29% Similarity=0.474 Sum_probs=71.2
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCC--CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~--~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
..++|||+|||.++.+.+|.++|.+||.|.+|.+.. ....||||+|++..+|+.||..-+|+.++|++|+|++.+.+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 467899999999999999999999999999997643 346799999999999999999999999999999999998764
No 86
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.92 E-value=4.8e-09 Score=88.02 Aligned_cols=70 Identities=37% Similarity=0.635 Sum_probs=64.2
Q ss_pred ceeeeccCCccchhhHhhhhcccCCeEEEEeCCC----CccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002873 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH----KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 281 tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~----skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
+|+|+|||..+++++|+++|+.||.|..+.+... .+++|||+|.+.++|..|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999876543 379999999999999999999999999999999864
No 87
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.91 E-value=3.6e-09 Score=110.92 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=66.6
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEeC--CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002873 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~--~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
..+|||+||++.+|+++|+++|+.||+|.+|++. +..+++|||+|+++++|..|+. |+|..|.+++|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999874 3456899999999999999995 99999999999998764
No 88
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=2.4e-09 Score=110.63 Aligned_cols=77 Identities=23% Similarity=0.433 Sum_probs=65.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002873 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
.+..-++|||++|++.+..++|+++|++||+|.+.. .++++|||+||.|.|.++|.+|++. .+-.|.||+..+.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 344568999999999999999999999999998865 3689999999999999999999983 4456788877776
Q ss_pred ecC
Q 002873 265 FSI 267 (872)
Q Consensus 265 ~a~ 267 (872)
.+.
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 653
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.89 E-value=5.2e-09 Score=109.73 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=66.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002873 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~--~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
..+|||+||++.+|+++|+++|+.||+|.+|++ .++.+++|||+|.++++|+.|+. |+|..|.+++|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 579999999999999999999999999999984 45567899999999999999996 99999999999997653
No 90
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.87 E-value=6.2e-09 Score=85.70 Aligned_cols=56 Identities=23% Similarity=0.594 Sum_probs=50.9
Q ss_pred HHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002873 211 LRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 211 Lr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
|+++|++||+|..+.+..+.+++|||+|.+.++|++|++.|+|..+.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999876555699999999999999999999999999999999985
No 91
>smart00360 RRM RNA recognition motif.
Probab=98.87 E-value=5.2e-09 Score=86.89 Aligned_cols=66 Identities=32% Similarity=0.623 Sum_probs=59.8
Q ss_pred eeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002873 284 VFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 284 V~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
|+|||..+++++|+++|++||.|..+.+. +..+++|||+|.+.++|.+|++.|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999998763 3347899999999999999999999999999999874
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.3e-09 Score=110.93 Aligned_cols=81 Identities=27% Similarity=0.492 Sum_probs=74.7
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
..+||||++|...+++.-|...|-+||.|++|.+ +.+.||||||+|.-.|+|.+||..||+.+|.||.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4579999999999999999999999999999965 46779999999999999999999999999999999999999
Q ss_pred CCcccc
Q 002873 353 PGGARR 358 (872)
Q Consensus 353 p~~~r~ 358 (872)
|...+.
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 976544
No 93
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.86 E-value=1.1e-08 Score=85.87 Aligned_cols=70 Identities=34% Similarity=0.638 Sum_probs=63.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCC----CcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002873 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 196 tLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~----ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
+|+|+|||..+++++|+++|+.||.|..+.+.. ..+++|||+|.+.++|..|++.+++..+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999987532 2489999999999999999999999999999998864
No 94
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.86 E-value=1.1e-07 Score=103.53 Aligned_cols=164 Identities=21% Similarity=0.312 Sum_probs=134.7
Q ss_pred CCCCCcEEEEcCCC--CCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccc--cceeeeee
Q 002873 190 GEHPSRTLFVRNIN--SNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHF 265 (872)
Q Consensus 190 ~e~~srtLfV~NLP--~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~--gr~L~V~~ 265 (872)
...+...|++.=|. +.+|.+-|..+.-..|+|.+|.+..+..--|+|+|++.+.|++|..+|||..|. -..|+|+|
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 34556677766554 678999999999999999999888777778999999999999999999999874 36889999
Q ss_pred cCCCCCC--------------C---------------C---------------------------------------cc-
Q 002873 266 SIPKDNP--------------S---------------E---------------------------------------KD- 276 (872)
Q Consensus 266 a~pk~~~--------------~---------------~---------------------------------------~~- 276 (872)
++|.+-. . . .+
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 8765100 0 0 00
Q ss_pred ---------ccccceeeeccCCc-cchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEE
Q 002873 277 ---------VNQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 346 (872)
Q Consensus 277 ---------~~~~tLfV~NLp~~-~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L 346 (872)
.....+.|.+|+.. ..-+.|..+|-.||.|..|+....+.|-|.||..|..+.++|+..||+..+-|.+|
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl 355 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKL 355 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceE
Confidence 01135788899876 46688999999999999999887788999999999999999999999999999999
Q ss_pred EEEecCC
Q 002873 347 KLEPSRP 353 (872)
Q Consensus 347 ~V~~s~p 353 (872)
.|.+++-
T Consensus 356 ~v~~SkQ 362 (494)
T KOG1456|consen 356 NVCVSKQ 362 (494)
T ss_pred EEeeccc
Confidence 9999864
No 95
>smart00360 RRM RNA recognition motif.
Probab=98.83 E-value=1.1e-08 Score=85.01 Aligned_cols=66 Identities=32% Similarity=0.570 Sum_probs=59.4
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002873 199 VRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 199 V~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
|+|||..+++++|+++|++||.|..+.+ .+.++|+|||+|.+.++|.+|++.+++..+.|++|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999988874 24457999999999999999999999999999988773
No 96
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.81 E-value=1.1e-08 Score=106.58 Aligned_cols=75 Identities=35% Similarity=0.624 Sum_probs=70.0
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002873 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
..+|||+||+.++++++|+++|.+||.|..+++ ++..+|||||+|.+.++|..|++.++|..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999988754 467899999999999999999999999999999999999765
No 97
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=5.5e-09 Score=106.45 Aligned_cols=80 Identities=25% Similarity=0.503 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
...|+|||++|..+++|.-|...|-+||+|.+|. .+.++||||||+|...++|..||..|++..|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3479999999999999999999999999999997 36789999999999999999999999999999999999999
Q ss_pred CCCCC
Q 002873 267 IPKDN 271 (872)
Q Consensus 267 ~pk~~ 271 (872)
.|.+.
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 88653
No 98
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=8.6e-08 Score=108.58 Aligned_cols=143 Identities=17% Similarity=0.292 Sum_probs=109.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-------eCCCccc---EEEEEeCCHHHHHHHHHHhcCcccccc
Q 002873 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-------TACKHRG---FVMISYYDIRAARTAMRALQNKPLRRR 259 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-------~~~ksrG---~AFVeF~d~e~A~~Ai~~Lng~~l~gr 259 (872)
..+-+++|||++||++++|++|...|..||.+..=. -....+| |+|+.|+++..++.-+.+..- ...
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 456789999999999999999999999999875422 1123566 999999999999988776532 344
Q ss_pred eeeeeecCCCCCC-------------------CCccccccceeeeccCCccchhhHhhhhc-ccCCeEEEEeCCC-----
Q 002873 260 KLDIHFSIPKDNP-------------------SEKDVNQGTLVVFNLDASVSNDDLRQIFG-AYGEVKEIRETPH----- 314 (872)
Q Consensus 260 ~L~V~~a~pk~~~-------------------~~~~~~~~tLfV~NLp~~~TeedL~e~Fs-~fG~V~~vri~~~----- 314 (872)
.++++.+.+.... ...-...+||||++||--++.++|..+|+ -||.|..+-|...
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 4444443332211 11122467999999999999999999999 7999999866433
Q ss_pred CccEEEEEECCHHHHHHHHHH
Q 002873 315 KRHHKFIEFYDVRAAEAALRA 335 (872)
Q Consensus 315 skGfaFVeF~~~e~A~kAl~~ 335 (872)
.+|-|=|.|.+..+-.+||.+
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 578999999999999999974
No 99
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=1.2e-08 Score=97.27 Aligned_cols=78 Identities=23% Similarity=0.403 Sum_probs=71.1
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002873 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
......|||.++...+++++|.+.|..||+|+.+.+ ++-.+||++|+|++.++|++|+.+|||..|-|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 345678999999999999999999999999999965 556789999999999999999999999999999999999
Q ss_pred cCC
Q 002873 351 SRP 353 (872)
Q Consensus 351 s~p 353 (872)
+--
T Consensus 149 ~Fv 151 (170)
T KOG0130|consen 149 CFV 151 (170)
T ss_pred EEe
Confidence 853
No 100
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.69 E-value=2.5e-08 Score=113.95 Aligned_cols=79 Identities=28% Similarity=0.410 Sum_probs=73.5
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002873 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
..+||+|+|+++++++|..+|+..|.|.++++ +++.+||||++|.+.++|.+|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999964 6788999999999999999999999999999999999999876
Q ss_pred cccc
Q 002873 355 GARR 358 (872)
Q Consensus 355 ~~r~ 358 (872)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 6544
No 101
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.67 E-value=3.3e-08 Score=112.96 Aligned_cols=76 Identities=25% Similarity=0.430 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002873 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
+.|||+|||+++++++|.++|+..|.|.+++ .+++.+||||++|.+.++|.+|++.|+|..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999987 47899999999999999999999999999999999999998654
Q ss_pred C
Q 002873 270 D 270 (872)
Q Consensus 270 ~ 270 (872)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=98.64 E-value=6.9e-08 Score=83.47 Aligned_cols=57 Identities=32% Similarity=0.515 Sum_probs=50.2
Q ss_pred hhhHhhhhc----ccCCeEEEE---e---C--CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002873 293 NDDLRQIFG----AYGEVKEIR---E---T--PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 293 eedL~e~Fs----~fG~V~~vr---i---~--~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
+++|+++|+ +||.|.+|. + + ++++|||||+|.+.++|.+|++.|||..++|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999884 2 2 5679999999999999999999999999999999863
No 103
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=9.5e-09 Score=102.35 Aligned_cols=75 Identities=23% Similarity=0.396 Sum_probs=69.2
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
...-|||+|||+.+||.||.-+|++||+|..|.+ +++++||||+.|++.++..-|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 4567999999999999999999999999999954 78899999999999999999999999999999999997543
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.63 E-value=5e-08 Score=100.76 Aligned_cols=77 Identities=32% Similarity=0.616 Sum_probs=71.4
Q ss_pred cceeeeccCCccchhhHhh----hhcccCCeEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002873 280 GTLVVFNLDASVSNDDLRQ----IFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e----~Fs~fG~V~~vri--~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
.||||.||+..+..++|+. +|++||+|.+|.. +++.+|.|||.|++.+.|-.|+++|+|..+.|+.++|.||+.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 4999999999999999988 9999999999965 567899999999999999999999999999999999999987
Q ss_pred Ccc
Q 002873 354 GGA 356 (872)
Q Consensus 354 ~~~ 356 (872)
+..
T Consensus 90 ~sd 92 (221)
T KOG4206|consen 90 DSD 92 (221)
T ss_pred ccc
Confidence 643
No 105
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=1.7e-08 Score=119.75 Aligned_cols=160 Identities=20% Similarity=0.346 Sum_probs=138.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCC----CcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002873 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~----ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
....++|||++||+..+++.+|+..|..+|.|.+|.+.. ....|+||.|.+...+-.|...+.+..|....+.+.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 346789999999999999999999999999999997532 2345999999999999999999999998877777777
Q ss_pred cCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCC--
Q 002873 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDING-- 343 (872)
Q Consensus 266 a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~G-- 343 (872)
..++ ....+.++|++|...+....|...|..||.|+.|.+. +..-|++|.|.+...|+.|++.|-|..|+|
T Consensus 448 G~~k------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 448 GQPK------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred cccc------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCcCCCCC
Confidence 6542 2346789999999999999999999999999999875 445799999999999999999999999987
Q ss_pred cEEEEEecCCCcc
Q 002873 344 KRIKLEPSRPGGA 356 (872)
Q Consensus 344 r~L~V~~s~p~~~ 356 (872)
++|.|.|+.+-..
T Consensus 521 ~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 521 RRLRVDLASPPGA 533 (975)
T ss_pred cccccccccCCCC
Confidence 7899999987554
No 106
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.61 E-value=1.5e-07 Score=102.78 Aligned_cols=210 Identities=13% Similarity=0.190 Sum_probs=133.4
Q ss_pred CcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCC-------CCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHH
Q 002873 141 GGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNG-------VGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRS 213 (872)
Q Consensus 141 Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~-------~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~ 213 (872)
|.+.|.|-+.|....+..+........ -+.+|+.... -..............-.|-+++||+++++.++.+
T Consensus 103 ge~lvrf~d~e~RdlalkRhkhh~g~r--yievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~ 180 (508)
T KOG1365|consen 103 GEALVRFVDPEGRDLALKRHKHHMGTR--YIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVE 180 (508)
T ss_pred cceEEEecCchhhhhhhHhhhhhccCC--ceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHH
Confidence 346778888887777776544322211 1222222211 0011111112222344677799999999999999
Q ss_pred Hhhcc-----CC--eEEEE-eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC-----------------C
Q 002873 214 LFEQY-----GD--IRTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI-----------------P 268 (872)
Q Consensus 214 lFs~f-----G~--I~~v~-~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~-----------------p 268 (872)
+|.+- |. |.-|+ ..++..|-|||.|..+++|+.|+.+ +...+..|-|.+-.+. +
T Consensus 181 FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~ 259 (508)
T KOG1365|consen 181 FFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIP 259 (508)
T ss_pred hcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccC
Confidence 99632 22 23333 3677889999999999999999984 3333433333321110 0
Q ss_pred CC----------CCCCccccccceeeeccCCccchhhHhhhhcccCC-eEE--EE----eCCCCccEEEEEECCHHHHHH
Q 002873 269 KD----------NPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGE-VKE--IR----ETPHKRHHKFIEFYDVRAAEA 331 (872)
Q Consensus 269 k~----------~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~-V~~--vr----i~~~skGfaFVeF~~~e~A~k 331 (872)
.. ..........+|.+++||+..+.|+|.++|..|-. |+. |. -.++..|-|||+|.+.|+|.+
T Consensus 260 ~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~a 339 (508)
T KOG1365|consen 260 GLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARA 339 (508)
T ss_pred CCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHH
Confidence 00 00011122568999999999999999999998853 222 32 246678899999999999999
Q ss_pred HHHHhCCceeCCcEEEEEecCC
Q 002873 332 ALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 332 Al~~LnG~~l~Gr~L~V~~s~p 353 (872)
|....+.+....|-|+|-.+.-
T Consensus 340 aaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 340 AAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred HHHHHHHhhcccceEEEeeccH
Confidence 9998888888888888866643
No 107
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=6.4e-09 Score=103.55 Aligned_cols=76 Identities=20% Similarity=0.409 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
.++.-|||+|||++.||.||.-+|++||+|..|. .+++++||||+.|++.++..-|+..|+|..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4578899999999999999999999999999886 47999999999999999999999999999999999999875
Q ss_pred C
Q 002873 267 I 267 (872)
Q Consensus 267 ~ 267 (872)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 4
No 108
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=6.8e-08 Score=92.14 Aligned_cols=78 Identities=18% Similarity=0.457 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
...-.|||.++-..++|++|.+.|..||+|+.+.+ ++-.+|||+|+|.+.++|++|+.++||..|.+.+|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34568999999999999999999999999999873 5668999999999999999999999999999999999997
Q ss_pred CCC
Q 002873 267 IPK 269 (872)
Q Consensus 267 ~pk 269 (872)
.-+
T Consensus 150 Fv~ 152 (170)
T KOG0130|consen 150 FVK 152 (170)
T ss_pred Eec
Confidence 543
No 109
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.57 E-value=1.8e-07 Score=102.75 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002873 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
...+|||++||.+++++++++.|++||.|.++. .+.+.+||+||.|.+.+.+++++. ...+.|.++.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 467999999999999999999999999887775 356789999999999999999998 78899999999999999
Q ss_pred CCCCC
Q 002873 268 PKDNP 272 (872)
Q Consensus 268 pk~~~ 272 (872)
|++..
T Consensus 175 pk~~~ 179 (311)
T KOG4205|consen 175 PKEVM 179 (311)
T ss_pred chhhc
Confidence 88654
No 110
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=1.1e-07 Score=109.43 Aligned_cols=168 Identities=20% Similarity=0.330 Sum_probs=135.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcc-----------C-CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCccc
Q 002873 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQY-----------G-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 256 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~f-----------G-~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l 256 (872)
......+.++|+++|..+++++...+|..- | .+..|.+ ...+.+|||+|.+.++|..|+. +++..+
T Consensus 170 ~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~~-~~~~~f 247 (500)
T KOG0120|consen 170 QATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAMA-LDGIIF 247 (500)
T ss_pred chhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhhc-ccchhh
Confidence 345567899999999999999999998743 3 2666644 5788999999999999999998 888888
Q ss_pred ccceeeeeecCCC-----C--------------CCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----C
Q 002873 257 RRRKLDIHFSIPK-----D--------------NPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----T 312 (872)
Q Consensus 257 ~gr~L~V~~a~pk-----~--------------~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~ 312 (872)
.|.++.+...... - ...........+||++|+..+++++++++...||.++..+. +
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT 327 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc
Confidence 8888877432100 0 00011123468999999999999999999999998877643 4
Q ss_pred CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcccc
Q 002873 313 PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARR 358 (872)
Q Consensus 313 ~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r~ 358 (872)
+.++||+|.+|.+......|+..|||..+.+++|.|..+.++....
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~ 373 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNA 373 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhc
Confidence 6789999999999999999999999999999999999998876544
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.57 E-value=1e-07 Score=111.56 Aligned_cols=75 Identities=31% Similarity=0.542 Sum_probs=70.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002873 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
+|||||+.|+..++|.||..+|+.||+|.+|.+ ...+|||||......+|.+|+.+|.+..+.++.|+|.|+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 689999999999999999999999999999965 478999999999999999999999999999999999999643
No 112
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=3.5e-07 Score=99.22 Aligned_cols=82 Identities=23% Similarity=0.446 Sum_probs=72.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHh-cCcccccceeeee
Q 002873 186 EHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIH 264 (872)
Q Consensus 186 ~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~L-ng~~l~gr~L~V~ 264 (872)
..+..+...++|||++|-..++|.+|++.|.+||+|+++.+. ..+++|||+|.+.++|+.|..++ +...+.|.+|.|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~-~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL-PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee-cccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 556677788999999999999999999999999999999764 45779999999999999998766 4455799999999
Q ss_pred ecCC
Q 002873 265 FSIP 268 (872)
Q Consensus 265 ~a~p 268 (872)
|..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9987
No 113
>smart00361 RRM_1 RNA recognition motif.
Probab=98.43 E-value=4.9e-07 Score=78.15 Aligned_cols=56 Identities=20% Similarity=0.358 Sum_probs=49.9
Q ss_pred HHHHHHHhh----ccCCeEEEE---e---C--CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002873 208 DLELRSLFE----QYGDIRTLY---T---A--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 208 eeeLr~lFs----~fG~I~~v~---~---~--~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
+++|+++|+ +||.|.+|. + + +.++|||||+|.+.++|.+|++.|+|+.+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678888898 999999874 2 2 668999999999999999999999999999999876
No 114
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.40 E-value=4.8e-07 Score=98.20 Aligned_cols=78 Identities=36% Similarity=0.524 Sum_probs=69.3
Q ss_pred ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHh-CCceeCCcEEEEEecCC
Q 002873 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL-NRSDINGKRIKLEPSRP 353 (872)
Q Consensus 275 ~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~L-nG~~l~Gr~L~V~~s~p 353 (872)
++..-.+|||++|...+++.+|+++|.+||+|+++++... ++.|||+|.+.++|+.|..++ +...|+|++|+|.|+++
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 3445679999999999999999999999999999998754 569999999999999998776 55588999999999998
No 115
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=4.9e-08 Score=115.57 Aligned_cols=141 Identities=13% Similarity=0.216 Sum_probs=120.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
+...++||+||++.+.+.+|...|..+|.+..+. ..++.+|+|||.|..++++.+|+.......+.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 3456899999999999999999999999887765 35778999999999999999999854443332
Q ss_pred CCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 002873 267 IPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (872)
Q Consensus 267 ~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~ 342 (872)
...++|+|.|+..|.++|+.+|.++|.+++.++ .++.+|.++|.|.+..+|.+++..+++..+.
T Consensus 736 ------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 736 ------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred ------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhh
Confidence 346999999999999999999999999999865 3567899999999999999999988888887
Q ss_pred CcEEEEEecCC
Q 002873 343 GKRIKLEPSRP 353 (872)
Q Consensus 343 Gr~L~V~~s~p 353 (872)
-+.+.|..+.|
T Consensus 804 E~~~~v~vsnp 814 (881)
T KOG0128|consen 804 ENNGEVQVSNP 814 (881)
T ss_pred hcCccccccCC
Confidence 77788877665
No 116
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.37 E-value=1.4e-07 Score=96.59 Aligned_cols=133 Identities=21% Similarity=0.291 Sum_probs=109.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
...+||||.|+-..++|+-|.++|-+-|+|..|.+ ..+.+ ||||.|.++-.+.-|+..++|..+.++.+.|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r- 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR- 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc-
Confidence 34799999999999999999999999999999974 23334 9999999999999999999999998888877653
Q ss_pred CCCCCCCccccccceeeec----cCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCc
Q 002873 268 PKDNPSEKDVNQGTLVVFN----LDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRS 339 (872)
Q Consensus 268 pk~~~~~~~~~~~tLfV~N----Lp~~~TeedL~e~Fs~fG~V~~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~ 339 (872)
.++ |+..++++.+.+.|+.-|.+..+|+. ++.+.++|+.+....+.-.|+....+.
T Consensus 85 ----------------~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 85 ----------------CGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred ----------------cCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhccc
Confidence 233 66778999999999999999888763 456789999998887777887766655
Q ss_pred eeC
Q 002873 340 DIN 342 (872)
Q Consensus 340 ~l~ 342 (872)
.+.
T Consensus 149 ~~~ 151 (267)
T KOG4454|consen 149 ELF 151 (267)
T ss_pred CcC
Confidence 443
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.35 E-value=7.6e-07 Score=104.56 Aligned_cols=80 Identities=28% Similarity=0.382 Sum_probs=74.8
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCccc
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 357 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r 357 (872)
.++||||+.|+..+++.||+.+|+.||+|.+|.+. ..+++|||......+|.+|+.+|+...+.++.|+|.|+..++.+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 46799999999999999999999999999999886 46899999999999999999999999999999999999988776
Q ss_pred c
Q 002873 358 R 358 (872)
Q Consensus 358 ~ 358 (872)
.
T Consensus 499 s 499 (894)
T KOG0132|consen 499 S 499 (894)
T ss_pred h
Confidence 6
No 118
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.9e-07 Score=97.30 Aligned_cols=78 Identities=24% Similarity=0.396 Sum_probs=71.4
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
+.+.|||.-|++-|++++|.-+|+.||.|.+|.+ ++.+-.||||+|++.+++++|.-.|+...|+.++|.|.|++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4678999999999999999999999999999965 55677899999999999999999999999999999999997
Q ss_pred CCc
Q 002873 353 PGG 355 (872)
Q Consensus 353 p~~ 355 (872)
.-.
T Consensus 318 SVs 320 (479)
T KOG0415|consen 318 SVS 320 (479)
T ss_pred hhh
Confidence 543
No 119
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.32 E-value=7.3e-07 Score=93.51 Aligned_cols=81 Identities=21% Similarity=0.402 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002873 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
..+.|.|||-.||.+..+.||..+|-.||.|.+.+ .++.+|.|+||.|.++.+|+.||.+|||..|.=++|+|+.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 45679999999999999999999999999999876 3678999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002873 266 SIPKDN 271 (872)
Q Consensus 266 a~pk~~ 271 (872)
-+|++.
T Consensus 362 KRPkda 367 (371)
T KOG0146|consen 362 KRPKDA 367 (371)
T ss_pred cCcccc
Confidence 888764
No 120
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.32 E-value=6.1e-07 Score=98.12 Aligned_cols=165 Identities=20% Similarity=0.273 Sum_probs=128.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
...+++|++++...+.+.++..++..+|.+..+. -...++|++.|.|...+.+..|+.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4578999999999999999999999999766554 24568999999999999999999844434555554443332
Q ss_pred CCCCC-----C-CCcccccccee-eeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHH
Q 002873 267 IPKDN-----P-SEKDVNQGTLV-VFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALR 334 (872)
Q Consensus 267 ~pk~~-----~-~~~~~~~~tLf-V~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~ 334 (872)
..... . ........++| |.+|++.+++++|+..|..+|.|..+++ ++..++||+|+|.....+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 21110 0 00111234555 9999999999999999999999999976 34568999999999999999998
Q ss_pred HhCCceeCCcEEEEEecCCCccc
Q 002873 335 ALNRSDINGKRIKLEPSRPGGAR 357 (872)
Q Consensus 335 ~LnG~~l~Gr~L~V~~s~p~~~r 357 (872)
. +...+.++++.|.+..+....
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred c-ccCcccCcccccccCCCCccc
Confidence 7 888999999999999887543
No 121
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.32 E-value=1.6e-05 Score=90.10 Aligned_cols=206 Identities=14% Similarity=0.196 Sum_probs=130.6
Q ss_pred CCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCCCC--cccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhc
Q 002873 140 GGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVG--TVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQ 217 (872)
Q Consensus 140 ~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~~~--~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~ 217 (872)
.|.++|++..+|....+++|.-..-..- =+.++....... ......+......-.|-+++||+.+|++||.++|+.
T Consensus 49 sGeA~Ve~~seedv~~AlkkdR~~mg~R--YIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaG 126 (510)
T KOG4211|consen 49 SGEAYVEFTSEEDVEKALKKDRESMGHR--YIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAG 126 (510)
T ss_pred CcceEEEeechHHHHHHHHhhHHHhCCc--eEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcC
Confidence 4568999999999999888755222111 111122111100 001111222245679999999999999999999997
Q ss_pred cCCeEE-EE----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC-----------------C-------
Q 002873 218 YGDIRT-LY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI-----------------P------- 268 (872)
Q Consensus 218 fG~I~~-v~----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~-----------------p------- 268 (872)
.--|.. +. ..++..|-|||+|.+.+.|++|+. -+...|..+-|.|-.+. |
T Consensus 127 L~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~ 205 (510)
T KOG4211|consen 127 LEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPG 205 (510)
T ss_pred CcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhHHHHHHhhccccccccCCCCcccccc
Confidence 644333 11 235677899999999999999997 45455555555442210 0
Q ss_pred -----------CC------C------------------C--------CCcc---------------------cc-cccee
Q 002873 269 -----------KD------N------------------P--------SEKD---------------------VN-QGTLV 283 (872)
Q Consensus 269 -----------k~------~------------------~--------~~~~---------------------~~-~~tLf 283 (872)
+. . . ..++ .. ...+.
T Consensus 206 a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~ 285 (510)
T KOG4211|consen 206 APRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVH 285 (510)
T ss_pred CCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceee
Confidence 00 0 0 0000 00 13567
Q ss_pred eeccCCccchhhHhhhhcccCCe-EEEE--eCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002873 284 VFNLDASVSNDDLRQIFGAYGEV-KEIR--ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 284 V~NLp~~~TeedL~e~Fs~fG~V-~~vr--i~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
.++||+..++.++..+|+..-.+ ..|. -.++..|-|+|+|.+.++|..|+- -++..+..+-|.+-
T Consensus 286 MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams-kd~anm~hrYVElF 353 (510)
T KOG4211|consen 286 MRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG-KDGANMGHRYVELF 353 (510)
T ss_pred ecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhc-cCCcccCcceeeec
Confidence 78999999999999999976443 2222 356778899999999999999986 35666766666553
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.19 E-value=4.8e-06 Score=85.14 Aligned_cols=81 Identities=17% Similarity=0.345 Sum_probs=72.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002873 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQY-GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~f-G~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
........+||..+|..+.+.++..+|.+| |.|++++ .++.++|||||+|.+++.|+-|-+.||+..|.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344567889999999999999999999999 7777776 3788999999999999999999999999999999999
Q ss_pred eeecCCC
Q 002873 263 IHFSIPK 269 (872)
Q Consensus 263 V~~a~pk 269 (872)
|++-.|.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9998654
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2e-06 Score=93.22 Aligned_cols=79 Identities=20% Similarity=0.384 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002873 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...|...|||.-|.+-+++++|.-+|+.||.|.+|. .++.+..||||+|.+.+++++|+-+|++..|.++.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 346789999999999999999999999999999987 366778899999999999999999999999999999999
Q ss_pred ecCC
Q 002873 265 FSIP 268 (872)
Q Consensus 265 ~a~p 268 (872)
|+..
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 9753
No 124
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.18 E-value=8.8e-07 Score=92.68 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=115.0
Q ss_pred EEEcCCCCCCCHHH-H--HHHhhccCCeEEEE----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002873 197 LFVRNINSNVEDLE-L--RSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 197 LfV~NLP~~vteee-L--r~lFs~fG~I~~v~----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
.++.++-..+..+- | ...|+.|-.+.... ..++-++++|+.|.....-.++-..-.++++.-.++++.-....
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 44444444444333 2 45555554433322 24567889999999988888888877778887777666544433
Q ss_pred CCCCC--ccccccceeeeccCCccchhhHhhhhcccCCeEEE-----EeCCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 002873 270 DNPSE--KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI-----RETPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (872)
Q Consensus 270 ~~~~~--~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~v-----ri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~ 342 (872)
.++.. .+.+.-+||.+.|..+++++-|-..|.+|-..... .-+++++||+||.|.+..++.+|+++|+|+.++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 33332 33456689999999999999999999998543322 236789999999999999999999999999999
Q ss_pred CcEEEEEecCCCc
Q 002873 343 GKRIKLEPSRPGG 355 (872)
Q Consensus 343 Gr~L~V~~s~p~~ 355 (872)
.+.|++..+.-+.
T Consensus 259 srpiklRkS~wke 271 (290)
T KOG0226|consen 259 SRPIKLRKSEWKE 271 (290)
T ss_pred cchhHhhhhhHHh
Confidence 9999987665443
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.17 E-value=4e-06 Score=85.69 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=71.2
Q ss_pred ccccceeeeccCCccchhhHhhhhccc-CCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002873 277 VNQGTLVVFNLDASVSNDDLRQIFGAY-GEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~f-G~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
...+.++|..++.-+.+.++..+|.+| |.|..+|+ +|.++|||||+|++.+.|.-|-+.||++.|.|+.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345789999999999999999999998 67777765 688999999999999999999999999999999999999
Q ss_pred cCCC
Q 002873 351 SRPG 354 (872)
Q Consensus 351 s~p~ 354 (872)
-.|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8887
No 126
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=98.12 E-value=2.2e-06 Score=87.56 Aligned_cols=90 Identities=21% Similarity=0.382 Sum_probs=60.9
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHhhcCCceeeEEEee--eccc--ccceeEEEEEeccChhHHHHHHHHhcCCcccCCC
Q 002873 710 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLP--IDFK--NKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFN 785 (872)
Q Consensus 710 d~rTTvMirNIPnk~t~~~L~~~id~~~~g~ydf~Ylp--~df~--~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~ 785 (872)
..++.|.||+||+.+|.+.+++.|+......++|-|++ .+.. ..+-...|||||.+.+++..|.+.|+|+.|..-.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 46789999999999999999998887666666666655 3322 3345667999999999999999999999998665
Q ss_pred C-ccEEEEEeeeccc
Q 002873 786 S-EKVASLAYARIQG 799 (872)
Q Consensus 786 s-~k~~~v~~A~iQG 799 (872)
. ..++.|.||-.|-
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 4 4899999998864
No 127
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.04 E-value=1e-05 Score=83.35 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=67.6
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEE--EeCCCC----ccEEEEEECCHHHHHHHHHHhCCceeC---CcEEEEE
Q 002873 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEI--RETPHK----RHHKFIEFYDVRAAEAALRALNRSDIN---GKRIKLE 349 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~v--ri~~~s----kGfaFVeF~~~e~A~kAl~~LnG~~l~---Gr~L~V~ 349 (872)
-+||||.+||.++...||..+|..|-..+.+ +.+.+. +-+|||.|.+.++|.+|+++|||..|+ +..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 5799999999999999999999999666655 344332 368999999999999999999999987 7899999
Q ss_pred ecCCCcccc
Q 002873 350 PSRPGGARR 358 (872)
Q Consensus 350 ~s~p~~~r~ 358 (872)
+++...+++
T Consensus 114 lAKSNtK~k 122 (284)
T KOG1457|consen 114 LAKSNTKRK 122 (284)
T ss_pred ehhcCcccc
Confidence 998765543
No 128
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.04 E-value=3.7e-06 Score=87.66 Aligned_cols=99 Identities=21% Similarity=0.405 Sum_probs=80.7
Q ss_pred ceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc-----
Q 002873 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG----- 355 (872)
Q Consensus 281 tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~----- 355 (872)
.+||++|++.+.+.+|..+|..||.|.+|.+. .+|+||+|.+..+|..|+..||+++|.|-++.|++++...
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGR 79 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeecccccccccCC
Confidence 58999999999999999999999999999874 6899999999999999999999999999889999998421
Q ss_pred ----ccc---------------hhhhcCChhccHHHHHHhhhccCC
Q 002873 356 ----ARR---------------NLMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 356 ----~r~---------------~~~~ql~~~~tq~~l~~~f~~~Gs 382 (872)
.+. ..++++...+.+.++...|.++|.
T Consensus 80 ~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~ 125 (216)
T KOG0106|consen 80 PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGE 125 (216)
T ss_pred CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCC
Confidence 000 133455555666677777776663
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.94 E-value=1.1e-05 Score=91.65 Aligned_cols=74 Identities=24% Similarity=0.466 Sum_probs=67.8
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002873 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
+.|+|.+|...|...+|+.+|++||+|+-+++. +..++|+||++.+.++|.++|..|+.++|.|+.|.|+.++.
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 579999999999999999999999999888652 44588999999999999999999999999999999998874
No 130
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.89 E-value=3.3e-05 Score=82.23 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002873 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
+.-..+|+|.|||+.|++++|+++|+.||.+..+-+ .+++.|+|-|.|...++|.+|++.+++..+.|+++.+...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344578999999999999999999999998888763 5778899999999999999999999999999999998876
Q ss_pred CC
Q 002873 267 IP 268 (872)
Q Consensus 267 ~p 268 (872)
.+
T Consensus 160 ~~ 161 (243)
T KOG0533|consen 160 SS 161 (243)
T ss_pred cC
Confidence 43
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.88 E-value=3.5e-05 Score=87.81 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
.-.+.|||.+|...+-..+|+.||++||+|+-.++ ++-.++|+||++.+.++|.+||..|+.+.|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999986652 3446789999999999999999999999999999999886
Q ss_pred C
Q 002873 267 I 267 (872)
Q Consensus 267 ~ 267 (872)
.
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 4
No 132
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.81 E-value=3.6e-05 Score=90.06 Aligned_cols=83 Identities=17% Similarity=0.339 Sum_probs=72.9
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--------CCCcccEEEEEeCCHHHHHHHHHHhcCcccc
Q 002873 186 EHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPLR 257 (872)
Q Consensus 186 ~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~--------~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~ 257 (872)
....+...++.|||+||++.++++.|...|..||+|..|++ ..+.+.|+||.|.+..+|++|++.|+|..+.
T Consensus 166 sfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 166 SFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 33345567899999999999999999999999999999984 2345679999999999999999999999999
Q ss_pred cceeeeeecCC
Q 002873 258 RRKLDIHFSIP 268 (872)
Q Consensus 258 gr~L~V~~a~p 268 (872)
+..+++.|+.+
T Consensus 246 ~~e~K~gWgk~ 256 (877)
T KOG0151|consen 246 EYEMKLGWGKA 256 (877)
T ss_pred eeeeeeccccc
Confidence 99999999843
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.77 E-value=2.3e-06 Score=94.57 Aligned_cols=149 Identities=17% Similarity=0.326 Sum_probs=122.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCc-ccccceeeeeecCCCCC
Q 002873 195 RTLFVRNINSNVEDLELRSLFEQY--GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK-PLRRRKLDIHFSIPKDN 271 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~f--G~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~-~l~gr~L~V~~a~pk~~ 271 (872)
..+|++||.+.++.++|+.+|... +--..+ --..||+||.+.+...|.+|++.++|+ .+.|+++.+.++.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f---l~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF---LVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce---eeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 468999999999999999999754 111111 124689999999999999999999986 47899999999877654
Q ss_pred CCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCC--ccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002873 272 PSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHK--RHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 272 ~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~s--kGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
. .+.+-|+|+++...++-|..+...||.|..|..+... .-..-|+|...+.++.|+..|+|..+....++|.
T Consensus 79 r------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 79 R------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred H------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 3 4569999999999999999999999999998653221 2234578999999999999999999999999998
Q ss_pred ecC
Q 002873 350 PSR 352 (872)
Q Consensus 350 ~s~ 352 (872)
|--
T Consensus 153 YiP 155 (584)
T KOG2193|consen 153 YIP 155 (584)
T ss_pred cCc
Confidence 853
No 134
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.74 E-value=3.4e-05 Score=88.15 Aligned_cols=76 Identities=26% Similarity=0.440 Sum_probs=65.3
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002873 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~-----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
.+|||+|||++++.++|+++|..||.|+..+|. .+..+||||+|.+.++++.||++- -..|++++|.|+.-++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecccc
Confidence 469999999999999999999999999987552 223389999999999999999964 67899999999988775
Q ss_pred cc
Q 002873 355 GA 356 (872)
Q Consensus 355 ~~ 356 (872)
..
T Consensus 368 ~~ 369 (419)
T KOG0116|consen 368 FR 369 (419)
T ss_pred cc
Confidence 43
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.70 E-value=8e-05 Score=79.39 Aligned_cols=77 Identities=23% Similarity=0.361 Sum_probs=68.7
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
...+|+|.||+..++++||+++|..||.++.+-+ .+.+.|.|-|.|...++|.+|++.++|..++|+.+++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3468999999999999999999999998888754 466789999999999999999999999999999999887755
Q ss_pred C
Q 002873 354 G 354 (872)
Q Consensus 354 ~ 354 (872)
.
T Consensus 162 ~ 162 (243)
T KOG0533|consen 162 P 162 (243)
T ss_pred c
Confidence 4
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.70 E-value=5.2e-05 Score=86.62 Aligned_cols=75 Identities=23% Similarity=0.361 Sum_probs=62.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---C--CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---A--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---~--~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
....+|||+|||.++++++|+++|.+||+|+...+ . .+..+||||+|.+.++++.|+.+ +-..+.+++|.|+--
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 34556999999999999999999999999987653 1 33448999999999999999985 466778899998754
Q ss_pred C
Q 002873 267 I 267 (872)
Q Consensus 267 ~ 267 (872)
.
T Consensus 365 ~ 365 (419)
T KOG0116|consen 365 R 365 (419)
T ss_pred c
Confidence 3
No 137
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.66 E-value=0.00041 Score=76.52 Aligned_cols=154 Identities=18% Similarity=0.248 Sum_probs=108.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002873 193 PSRTLFVRNINSNVEDLELRSLFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~f-----G~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
++..|-.++||+..++.+|..+|.-. |.+......++..|.|.|.|.+.+.-+.|++ -+...+.++.+.|-.+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeeccC
Confidence 45667789999999999999999743 3233332456778999999999999999998 45566677777775543
Q ss_pred CCCC---------CC---CccccccceeeeccCCccchhhHhhhhcc---c-CC---eEEEEe-CCCCccEEEEEECCHH
Q 002873 268 PKDN---------PS---EKDVNQGTLVVFNLDASVSNDDLRQIFGA---Y-GE---VKEIRE-TPHKRHHKFIEFYDVR 327 (872)
Q Consensus 268 pk~~---------~~---~~~~~~~tLfV~NLp~~~TeedL~e~Fs~---f-G~---V~~vri-~~~skGfaFVeF~~~e 327 (872)
+.+- .. ....++-.|..++||+++++.++.++|.+ . |. |..|+- .++..|-|||.|..++
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee 217 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEE 217 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHH
Confidence 3210 00 01123456888999999999999999963 1 22 334433 5677899999999999
Q ss_pred HHHHHHHHhCCceeCCcEEEE
Q 002873 328 AAEAALRALNRSDINGKRIKL 348 (872)
Q Consensus 328 ~A~kAl~~LnG~~l~Gr~L~V 348 (872)
+|+.||.+ |...|+-|-|+|
T Consensus 218 ~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 218 DAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred HHHHHHHH-HHHHHhHHHHHH
Confidence 99999983 444454444443
No 138
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.63 E-value=6.2e-05 Score=88.14 Aligned_cols=79 Identities=27% Similarity=0.363 Sum_probs=70.6
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeC--------CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEE
Q 002873 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~--------~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~ 347 (872)
+...+.|||+||++.++++.|...|..||.|..+++. ...+.+|||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4556789999999999999999999999999999762 23467899999999999999999999999999999
Q ss_pred EEecCCC
Q 002873 348 LEPSRPG 354 (872)
Q Consensus 348 V~~s~p~ 354 (872)
+.|+++-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998653
No 139
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.56 E-value=3.3e-05 Score=85.08 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=119.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCC--------CcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002873 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC--------KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~--------ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
..|-|.||.+.++.+.++.||.-.|+|..+.+.+ .....|||.|.|...+..|-. |.+++|-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 4899999999999999999999999999887432 355689999999999999887 8888888877776542
Q ss_pred CCCC-----------------------------CCCC------------c-----------cccccceeeeccCCccchh
Q 002873 267 IPKD-----------------------------NPSE------------K-----------DVNQGTLVVFNLDASVSND 294 (872)
Q Consensus 267 ~pk~-----------------------------~~~~------------~-----------~~~~~tLfV~NLp~~~Tee 294 (872)
.... .+.. . +....|++|.+|...+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 1110 0000 0 0012589999999999999
Q ss_pred hHhhhhcccCCeEEEEeCC-CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002873 295 DLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 295 dL~e~Fs~fG~V~~vri~~-~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
++-+.|..+|+|...++.. ...-+|-|+|........|++ ++|.++.-....+..-+|.
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCcc
Confidence 9999999999999987643 334678899999999999988 6777776444444444443
No 140
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.56 E-value=0.00012 Score=85.43 Aligned_cols=166 Identities=14% Similarity=0.032 Sum_probs=120.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcc-CC---eEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002873 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQY-GD---IRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~f-G~---I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
....+++.+-+++.++++++.+++++|..- -. |..-.+.+...|-++|.|....++++|++ -+...+..|.+.+.
T Consensus 306 qvv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~ 384 (944)
T KOG4307|consen 306 QVVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTG 384 (944)
T ss_pred cccchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeec
Confidence 344556778889999999999999999632 11 22222445558899999999999999987 56666667766664
Q ss_pred ecCCC------C-----C-C------------------C-----CccccccceeeeccCCccchhhHhhhhcccCCeEE-
Q 002873 265 FSIPK------D-----N-P------------------S-----EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE- 308 (872)
Q Consensus 265 ~a~pk------~-----~-~------------------~-----~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~- 308 (872)
..... . . . . ........|||..||..+++.++.++|...-.|++
T Consensus 385 P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~ 464 (944)
T KOG4307|consen 385 PPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDF 464 (944)
T ss_pred CCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhe
Confidence 32100 0 0 0 0 00112358999999999999999999998877777
Q ss_pred EEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002873 309 IRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 309 vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
|.++ .+.++.|||+|..++++.+|+..-+...++.+.|+|.-.....
T Consensus 465 I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 465 IELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred eEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 6553 3456789999999999999988777777888899997665443
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.56 E-value=9.7e-05 Score=78.61 Aligned_cols=78 Identities=23% Similarity=0.378 Sum_probs=68.7
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002873 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
......+||+|+++.+|.+++..+|+.||.|..+.+ .++.+||+||+|.+.+.++.|++ |+|..|.|+.++|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 445678999999999999999999999999975533 45689999999999999999999 999999999999988
Q ss_pred cCCC
Q 002873 351 SRPG 354 (872)
Q Consensus 351 s~p~ 354 (872)
.+-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7543
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.44 E-value=0.00049 Score=61.41 Aligned_cols=68 Identities=19% Similarity=0.381 Sum_probs=49.2
Q ss_pred cEEEEcCCCCCCCHHHH----HHHhhccC-CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002873 195 RTLFVRNINSNVEDLEL----RSLFEQYG-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 195 rtLfV~NLP~~vteeeL----r~lFs~fG-~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
..|+|.|||.+.+...| +.|+.-|| .|..| ..+.|+|.|.+.+.|++|.+.|+|..+.|.+|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 57999999999987664 56777786 56666 36899999999999999999999999999999999974
No 143
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.41 E-value=0.00025 Score=77.52 Aligned_cols=74 Identities=14% Similarity=0.334 Sum_probs=65.8
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEE--------Ee----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEE
Q 002873 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEI--------RE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 346 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~v--------ri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L 346 (872)
...|||.|||.++|.+++.++|++||.|..- ++ .++-+|=|.|.|...++..-|++.|++..|.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 4569999999999999999999999988653 21 35568889999999999999999999999999999
Q ss_pred EEEecC
Q 002873 347 KLEPSR 352 (872)
Q Consensus 347 ~V~~s~ 352 (872)
+|+.|+
T Consensus 214 rVerAk 219 (382)
T KOG1548|consen 214 RVERAK 219 (382)
T ss_pred EEehhh
Confidence 999886
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.36 E-value=0.00086 Score=62.04 Aligned_cols=73 Identities=18% Similarity=0.340 Sum_probs=58.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccc----cceeee
Q 002873 195 RTLFVRNINSNVEDLELRSLFEQY--GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR----RRKLDI 263 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~f--G~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~----gr~L~V 263 (872)
+||.|+|||...|.++|.+++... |...-++ .+..+.|||||.|.+++.|.+..+.++|+... .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999988754 3333333 25668999999999999999999999998874 456677
Q ss_pred eecC
Q 002873 264 HFSI 267 (872)
Q Consensus 264 ~~a~ 267 (872)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7764
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.33 E-value=0.00024 Score=75.72 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=69.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002873 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
..+.+.+.+||+|+.+.++.+++...|+.||.|..+. ..+..+||+||+|.+.+.+++|+. |+|..|.++.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 3456779999999999999999999999999997554 345689999999999999999999 9999999999999
Q ss_pred eecC
Q 002873 264 HFSI 267 (872)
Q Consensus 264 ~~a~ 267 (872)
.+..
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 8754
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.27 E-value=0.00067 Score=60.58 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=48.2
Q ss_pred cceeeeccCCccchh----hHhhhhcccC-CeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002873 280 GTLVVFNLDASVSND----DLRQIFGAYG-EVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 280 ~tLfV~NLp~~~Tee----dL~e~Fs~fG-~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
..|+|.|||.+.+.. .|++++.-+| +|..|. .+-|+|.|.+.+.|.+|.+.|+|..+-|++|.|++...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 469999999987754 4677777885 566652 46799999999999999999999999999999999854
No 147
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.22 E-value=0.00017 Score=74.46 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=66.7
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCC----CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP----HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~----~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
...||||.|+...++++-|.++|-+-|.|..|.|.. +.+ ||||+|.++-...-|++.|||..+.+..|+|.+-.-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 357999999999999999999999999999997732 234 999999999999999999999999999999887543
No 148
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.18 E-value=0.00012 Score=87.64 Aligned_cols=178 Identities=14% Similarity=0.144 Sum_probs=133.8
Q ss_pred CCcEEEEcCCCCCCCHH-HHHHHhhccCCeEEEEeCC-----CcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002873 193 PSRTLFVRNINSNVEDL-ELRSLFEQYGDIRTLYTAC-----KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 193 ~srtLfV~NLP~~vtee-eLr~lFs~fG~I~~v~~~~-----ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
..+...+.++.+..... ..+..|..+|.|+.|.... ....+.++.+....+++.|.. ..+.-+.++...|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 34677788887777666 5788999999999987422 122278899999999999987 6778888888888777
Q ss_pred CCCCCCCCcc------ccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHH
Q 002873 267 IPKDNPSEKD------VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRA 335 (872)
Q Consensus 267 ~pk~~~~~~~------~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri-----~~~skGfaFVeF~~~e~A~kAl~~ 335 (872)
.++....... ....++||+||+..+.+++|...|..+|.+..+++ .++-+|+|+|+|...++|.+|+..
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 6654222111 12358999999999999999999999998888754 355689999999999999999996
Q ss_pred hCCceeCCcEEEEEecCCCcccchhhhcCChhccHHHHHHhhhccCCCC
Q 002873 336 LNRSDINGKRIKLEPSRPGGARRNLMQQLNQELEQDEARGFRHQVGSPV 384 (872)
Q Consensus 336 LnG~~l~Gr~L~V~~s~p~~~r~~~~~ql~~~~tq~~l~~~f~~~Gsp~ 384 (872)
..++.++.. ...+.+.+++-|.+.++.++...|.++
T Consensus 729 ~d~~~~gK~-------------~v~i~g~pf~gt~e~~k~l~~~~gn~~ 764 (881)
T KOG0128|consen 729 RDSCFFGKI-------------SVAISGPPFQGTKEELKSLASKTGNVT 764 (881)
T ss_pred hhhhhhhhh-------------hhheeCCCCCCchHHHHhhccccCCcc
Confidence 665555422 225566777778888888877776543
No 149
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.17 E-value=0.00083 Score=70.90 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=66.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCe-----EEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002873 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDI-----RTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I-----~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
...+-+||.+.|..+++++-|...|.+|-.. .+-+.+++++||+||.|.++.++..|+++++|+.++.++|.+..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 3456799999999999999999999998642 22225789999999999999999999999999999999998876
Q ss_pred cC
Q 002873 266 SI 267 (872)
Q Consensus 266 a~ 267 (872)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 53
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.16 E-value=0.0007 Score=63.59 Aligned_cols=71 Identities=27% Similarity=0.426 Sum_probs=45.2
Q ss_pred ceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC-----ceeCCcEEEEEecC
Q 002873 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR-----SDINGKRIKLEPSR 352 (872)
Q Consensus 281 tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG-----~~l~Gr~L~V~~s~ 352 (872)
.|+|.+++..++.++|++.|+.||.|..|.+.. ....|+|+|.+.++|++|+.++.- ..|.+..+.++.-.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLe 78 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLE 78 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECC
Confidence 588999999999999999999999999999863 345799999999999999998843 35667666665543
No 151
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.78 E-value=0.0033 Score=69.10 Aligned_cols=164 Identities=18% Similarity=0.284 Sum_probs=101.6
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCC
Q 002873 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNG 179 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~ 179 (872)
.++++.+.++.....+..+.++.- ++.-... +-....+++.+.|+..+....++.-.. ......+.+. ..+...
T Consensus 93 ~g~~s~~~e~~~~~~~~~~~g~~~---~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~-~~~~~~~~~~-~dl~~~ 167 (285)
T KOG4210|consen 93 VGELSENIEESEDDNFSSEAGLRV---DARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESG-SKVLDGNKGE-KDLNTR 167 (285)
T ss_pred ccccccchhhccccccchhhcCcc---cchhhhhccccccccceeeccccHHHHHHHHHhhh-cccccccccc-Cccccc
Confidence 667766654444444444454433 1111111 334556778899988776555444222 1011111110 001100
Q ss_pred CC--cccCCCCCCCCCCcEEE-EcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHh
Q 002873 180 VG--TVAGEHPYGEHPSRTLF-VRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRAL 251 (872)
Q Consensus 180 ~~--~~~g~~~~~e~~srtLf-V~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFVeF~d~e~A~~Ai~~L 251 (872)
.+ .........-.+..++| |++|+..+++++|+..|..+|.|..+++ .+..+|||+|.|.+...+..++..
T Consensus 168 ~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~- 246 (285)
T KOG4210|consen 168 RGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND- 246 (285)
T ss_pred ccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-
Confidence 00 00011112223345555 9999999999999999999999999983 567889999999999999999987
Q ss_pred cCcccccceeeeeecCCCC
Q 002873 252 QNKPLRRRKLDIHFSIPKD 270 (872)
Q Consensus 252 ng~~l~gr~L~V~~a~pk~ 270 (872)
+...+.++++.+.+..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 247 QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred ccCcccCcccccccCCCCc
Confidence 8888999999999886654
No 152
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.67 E-value=0.0019 Score=72.56 Aligned_cols=141 Identities=21% Similarity=0.237 Sum_probs=87.5
Q ss_pred hHHHhhcccccccccCCCccccccc-cc-----cCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCcc-ccc--cCCCC
Q 002873 110 NDLLAGLVDDFDLRGLPSQLEDLED-DL-----FDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIA-HYP--ISNGV 180 (872)
Q Consensus 110 davls~vadel~l~klfsd~~diee-dl-----f~s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~-~~~--l~n~~ 180 (872)
++++..|++..++ .|+|.--+.+ -| -...|.|-|.+-..-...+++++.+-. +...+. ..+ +....
T Consensus 138 edl~~kIv~QVEy--yFSDenL~~d~fLlkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~---va~ALr~S~kL~vseDg 212 (484)
T KOG1855|consen 138 EDLAAKIVDQVEY--YFSDENLLKDAFLLKHVRRNKEGYVPVKLVASFKKVKALTRDWKL---VADALRKSSKLEVSEDG 212 (484)
T ss_pred HHHHHHHHHHhhe--eeccccccchHHHHHHHhcCCCCceeeehhhhHHHHHHHhhhhHH---HHHHHhhcceEEEccCC
Confidence 6788888887776 6666544444 11 123355555544444445555554411 110100 000 01111
Q ss_pred Cccc-----CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCC------------------cccEEEEE
Q 002873 181 GTVA-----GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK------------------HRGFVMIS 237 (872)
Q Consensus 181 ~~~~-----g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~k------------------srG~AFVe 237 (872)
.++. .+.+..+-++++|.+.|||.+-.-+.|.++|..+|.|..|++..+ .+-+|+|+
T Consensus 213 kKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvE 292 (484)
T KOG1855|consen 213 KKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVE 292 (484)
T ss_pred ceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhh
Confidence 1111 122334568999999999999999999999999999999984221 25689999
Q ss_pred eCCHHHHHHHHHHhcCcc
Q 002873 238 YYDIRAARTAMRALQNKP 255 (872)
Q Consensus 238 F~d~e~A~~Ai~~Lng~~ 255 (872)
|...+.|.+|.+.++...
T Consensus 293 ye~~~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 293 YEEVEAARKARELLNPEQ 310 (484)
T ss_pred hhhhHHHHHHHHhhchhh
Confidence 999999999999765443
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.65 E-value=0.0048 Score=67.26 Aligned_cols=76 Identities=18% Similarity=0.394 Sum_probs=62.2
Q ss_pred ccceeeeccCCccchhh----H--hhhhcccCCeEEEEeCCCC------cc-E-EEEEECCHHHHHHHHHHhCCceeCCc
Q 002873 279 QGTLVVFNLDASVSNDD----L--RQIFGAYGEVKEIRETPHK------RH-H-KFIEFYDVRAAEAALRALNRSDINGK 344 (872)
Q Consensus 279 ~~tLfV~NLp~~~Teed----L--~e~Fs~fG~V~~vri~~~s------kG-f-aFVeF~~~e~A~kAl~~LnG~~l~Gr 344 (872)
..-+||-+|++.+..|+ | .++|.+||.|+.|-+..+. .+ + .||+|.+.|+|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999987777 2 4789999999999764321 12 2 39999999999999999999999999
Q ss_pred EEEEEecCCC
Q 002873 345 RIKLEPSRPG 354 (872)
Q Consensus 345 ~L~V~~s~p~ 354 (872)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987643
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.49 E-value=0.0032 Score=70.40 Aligned_cols=101 Identities=24% Similarity=0.347 Sum_probs=81.9
Q ss_pred cceeeeccCCccchhhHhhhhccc--CCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCc-eeCCcEEEEEecCCCcc
Q 002873 280 GTLVVFNLDASVSNDDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRS-DINGKRIKLEPSRPGGA 356 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~f--G~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~-~l~Gr~L~V~~s~p~~~ 356 (872)
..||++||.+.++..+|..+|... +.-..+- -..||+||.+.+...|.+|++.++|+ ++.|+++.|..+-++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 368999999999999999999753 1111111 13689999999999999999999997 89999999999988765
Q ss_pred c--chhhhcCChhccHHHHHHhhhccCCC
Q 002873 357 R--RNLMQQLNQELEQDEARGFRHQVGSP 383 (872)
Q Consensus 357 r--~~~~~ql~~~~tq~~l~~~f~~~Gsp 383 (872)
+ +..+++.+..+..+-+..+..+||.+
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~v 107 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTV 107 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCH
Confidence 4 34667788888888888888999875
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.47 E-value=0.0076 Score=56.65 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=39.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCc
Q 002873 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 254 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~ 254 (872)
+.|.|.+++..++-++|++.|++||.|..|... +....|+|.|.+.++|++|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~-~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS-RGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec-CCCCEEEEEECCcchHHHHHHHHHhc
Confidence 568899999999999999999999999998643 45568999999999999999977543
No 156
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=96.32 E-value=0.0022 Score=71.49 Aligned_cols=74 Identities=19% Similarity=0.399 Sum_probs=60.7
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHhhcCCceeeEEEee-ecccccce-eEEEEEeccChhHHHHHHHHhcCCcccCC
Q 002873 710 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLP-IDFKNKCN-VGYAFINMVSPSHIISFYEAFNGKKWEKF 784 (872)
Q Consensus 710 d~rTTvMirNIPnk~t~~~L~~~id~~~~g~ydf~Ylp-~df~~~~n-~gyaFinf~~~~~~~~f~~~f~g~~w~~~ 784 (872)
+....|.||++|+++|...|++.||- +...+.|.|+- -|+....+ .+.|||||..+.++..|...|+|+..=..
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 34578999999999999999999999 88888888765 55443322 55599999999999999999999876543
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.26 E-value=0.005 Score=69.23 Aligned_cols=67 Identities=31% Similarity=0.464 Sum_probs=56.1
Q ss_pred CCccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCC------------------CccEEEEEECCHHHHHHHHH
Q 002873 273 SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH------------------KRHHKFIEFYDVRAAEAALR 334 (872)
Q Consensus 273 ~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~------------------skGfaFVeF~~~e~A~kAl~ 334 (872)
..++...+||.+.|||.+-.-+.|.++|+.+|.|+.|||..- .+-+|+|||+..+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 344567899999999999999999999999999999987321 13469999999999999999
Q ss_pred HhCCc
Q 002873 335 ALNRS 339 (872)
Q Consensus 335 ~LnG~ 339 (872)
.|+..
T Consensus 305 ~~~~e 309 (484)
T KOG1855|consen 305 LLNPE 309 (484)
T ss_pred hhchh
Confidence 87543
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.15 E-value=0.0085 Score=65.42 Aligned_cols=75 Identities=24% Similarity=0.362 Sum_probs=61.7
Q ss_pred CCcEEEEcCCCCCCCHHHH------HHHhhccCCeEEEEeCCCc------cc--EEEEEeCCHHHHHHHHHHhcCccccc
Q 002873 193 PSRTLFVRNINSNVEDLEL------RSLFEQYGDIRTLYTACKH------RG--FVMISYYDIRAARTAMRALQNKPLRR 258 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeL------r~lFs~fG~I~~v~~~~ks------rG--~AFVeF~d~e~A~~Ai~~Lng~~l~g 258 (872)
...-+||-+||+.+-.+++ .++|.+||.|..|.+..+. .+ -.||.|.+.++|.+||.+.+|..+.|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4567999999999887773 3799999999998743221 12 24999999999999999999999999
Q ss_pred ceeeeeecC
Q 002873 259 RKLDIHFSI 267 (872)
Q Consensus 259 r~L~V~~a~ 267 (872)
+.|+..|..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999998864
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.11 E-value=0.013 Score=48.28 Aligned_cols=52 Identities=17% Similarity=0.427 Sum_probs=43.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHH
Q 002873 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAM 248 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai 248 (872)
+.|-|.+.+.+..+ ++...|..||+|..+... ....+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 67888999876664 455589999999999764 56779999999999999985
No 160
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.11 E-value=0.01 Score=63.07 Aligned_cols=87 Identities=26% Similarity=0.374 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCcccccceeeeeecCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEE----EeCCCCcc
Q 002873 242 RAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI----RETPHKRH 317 (872)
Q Consensus 242 e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~v----ri~~~skG 317 (872)
.-|..|-.+|++....++.|.|.|+. ...|+|.||..-++.+.|.+.|+.||.|... +..++..+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~-----------~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAM-----------HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeec-----------cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 35777888899999999999999984 2569999999999999999999999987653 33456678
Q ss_pred EEEEEECCHHHHHHHHHHhCCc
Q 002873 318 HKFIEFYDVRAAEAALRALNRS 339 (872)
Q Consensus 318 faFVeF~~~e~A~kAl~~LnG~ 339 (872)
-++|+|...-.|.+|++.+.-.
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred cchhhhhcchhHHHHHHHhccC
Confidence 8999999999999999987533
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.96 E-value=0.013 Score=48.31 Aligned_cols=52 Identities=17% Similarity=0.377 Sum_probs=42.8
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHH
Q 002873 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAAL 333 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl 333 (872)
+.|-|.+.+.+..+. +...|..||+|..+.+. ......+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 457888888776655 45588899999999986 45678999999999999985
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.96 E-value=0.021 Score=53.23 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=52.6
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEE------------eCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcE
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR------------ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR 345 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vr------------i~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~ 345 (872)
....|.|.+.|+..+ ..+.+.|++||+|.+.. -.+....+--|+|+++.+|++||+ -||..|.|..
T Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 345688999998854 55677899999998885 123456789999999999999999 7999999864
Q ss_pred -EEEEecC
Q 002873 346 -IKLEPSR 352 (872)
Q Consensus 346 -L~V~~s~ 352 (872)
+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4467664
No 163
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.84 E-value=0.024 Score=67.02 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=61.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCe----EEEE-eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002873 194 SRTLFVRNINSNVEDLELRSLFEQYGDI----RTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I----~~v~-~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
.+.|-+.|+|++++.+||.++|..|-.+ ..-+ ..+...|-|.|.|++.++|++|+..|+++.|..+++++..
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3589999999999999999999999543 2222 4567788999999999999999999999999999988753
No 164
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.62 E-value=0.0089 Score=66.20 Aligned_cols=79 Identities=24% Similarity=0.320 Sum_probs=69.1
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEE-------------eCCCCccEEEEEECCHHHHHHHHHHhCCceeCCc
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-------------ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGK 344 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vr-------------i~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr 344 (872)
...+|||-+|+..+++.+|.++|.++|.|+.=+ .+...++-|.|.|.|...|+.|+.-++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 456899999999999999999999999886532 3456788999999999999999999999999999
Q ss_pred EEEEEecCCCcc
Q 002873 345 RIKLEPSRPGGA 356 (872)
Q Consensus 345 ~L~V~~s~p~~~ 356 (872)
+|+|.++..+..
T Consensus 145 ~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 145 TIKVSLAERRTG 156 (351)
T ss_pred CchhhhhhhccC
Confidence 999998876553
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.57 E-value=0.0088 Score=63.48 Aligned_cols=69 Identities=20% Similarity=0.431 Sum_probs=58.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCC-------------ccc----EEEEEeCCHHHHHHHHHHhcCc
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK-------------HRG----FVMISYYDIRAARTAMRALQNK 254 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~k-------------srG----~AFVeF~d~e~A~~Ai~~Lng~ 254 (872)
+..-.||+++||+.+...-|+++|++||.|-+|++.+. +++ -++|+|.+...|.++...||+.
T Consensus 72 rk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 72 RKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred ccceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 35679999999999999999999999999999984221 111 2789999999999999999999
Q ss_pred ccccce
Q 002873 255 PLRRRK 260 (872)
Q Consensus 255 ~l~gr~ 260 (872)
.|.|++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 998864
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.36 E-value=0.0066 Score=64.39 Aligned_cols=68 Identities=28% Similarity=0.491 Sum_probs=58.9
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCC---------------cc--EEEEEECCHHHHHHHHHHhCCce
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHK---------------RH--HKFIEFYDVRAAEAALRALNRSD 340 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~s---------------kG--faFVeF~~~e~A~kAl~~LnG~~ 340 (872)
..+.||+++||+......|+++|+.||.|-.|.+.+.. .. -|.|||.+...|.+....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 46789999999999999999999999999999664321 11 28999999999999999999999
Q ss_pred eCCcE
Q 002873 341 INGKR 345 (872)
Q Consensus 341 l~Gr~ 345 (872)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99974
No 167
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.35 E-value=0.028 Score=65.26 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=58.3
Q ss_pred ccccceeeeccCCcc------chhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeC-CcE
Q 002873 277 VNQGTLVVFNLDASV------SNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN-GKR 345 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~------TeedL~e~Fs~fG~V~~vri----~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~-Gr~ 345 (872)
.....|+|-|+|--- -..-|.++|+++|+|....+ .+..+||.|++|.+.++|+.|++.|||+.|+ .|+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 345678898888532 12346789999999888754 3567999999999999999999999999886 577
Q ss_pred EEEEe
Q 002873 346 IKLEP 350 (872)
Q Consensus 346 L~V~~ 350 (872)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 77654
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.32 E-value=0.037 Score=51.63 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=53.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE------------eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccce
Q 002873 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY------------TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 260 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~------------~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~ 260 (872)
..+.|.|=+.|+. ....|.+.|++||+|.+.. ..........|+|.++.+|++|+. .||+.+.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4577899999987 6678889999999998875 123456789999999999999998 7999998754
Q ss_pred -eeeeec
Q 002873 261 -LDIHFS 266 (872)
Q Consensus 261 -L~V~~a 266 (872)
+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 446665
No 169
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.24 E-value=0.15 Score=48.49 Aligned_cols=85 Identities=20% Similarity=0.308 Sum_probs=66.6
Q ss_pred cceeEEeecCCCCCCHHHHHHHHhhcCCceeeEEEeeecccccceeEEEEEeccChhHHHHHHHHhcCCcccCCCCccEE
Q 002873 711 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 790 (872)
Q Consensus 711 ~rTTvMirNIPnk~t~~~L~~~id~~~~g~ydf~Ylp~df~~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~s~k~~ 790 (872)
.+|+|-+=-+|+.++..+++..+-+.+.....-+.+.-|.. -|.-=+-|-|.+..+|..||+.|||++.+..-. -+|
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp-E~C 87 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP-ETC 87 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC-cee
Confidence 34667677899999998777777777777777666666643 466669999999999999999999999987755 459
Q ss_pred EEEe-eecc
Q 002873 791 SLAY-ARIQ 798 (872)
Q Consensus 791 ~v~~-A~iQ 798 (872)
.|.| .+||
T Consensus 88 hvvfV~~Ve 96 (110)
T PF07576_consen 88 HVVFVKSVE 96 (110)
T ss_pred EEEEEEEEE
Confidence 9999 4555
No 170
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.17 E-value=0.018 Score=63.93 Aligned_cols=77 Identities=21% Similarity=0.272 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-------------eCCCcccEEEEEeCCHHHHHHHHHHhcCcccc
Q 002873 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-------------TACKHRGFVMISYYDIRAARTAMRALQNKPLR 257 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-------------~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~ 257 (872)
....-+|||-+||..+++.+|.++|.++|.|..=+ .+.+.|+-|.|.|.+...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44567999999999999999999999999886432 35678999999999999999999999999999
Q ss_pred cceeeeeecC
Q 002873 258 RRKLDIHFSI 267 (872)
Q Consensus 258 gr~L~V~~a~ 267 (872)
+.+|+|..+.
T Consensus 143 gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 GNTIKVSLAE 152 (351)
T ss_pred CCCchhhhhh
Confidence 9888887764
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.12 E-value=0.055 Score=53.56 Aligned_cols=74 Identities=32% Similarity=0.424 Sum_probs=53.3
Q ss_pred cccceeeeccCCc-----cch----hhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEE
Q 002873 278 NQGTLVVFNLDAS-----VSN----DDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKL 348 (872)
Q Consensus 278 ~~~tLfV~NLp~~-----~Te----edL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V 348 (872)
...||.|.=+.+. .-+ .+|.+.|..||+|.-+|... +.-+|+|.+-+.|.+|+. |+|.++.|+.|+|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 4567777655511 222 36888899999999998864 357999999999999998 9999999999999
Q ss_pred EecCCCc
Q 002873 349 EPSRPGG 355 (872)
Q Consensus 349 ~~s~p~~ 355 (872)
++..|.-
T Consensus 102 ~LKtpdW 108 (146)
T PF08952_consen 102 RLKTPDW 108 (146)
T ss_dssp EE-----
T ss_pred EeCCccH
Confidence 9988763
No 172
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.92 E-value=0.01 Score=71.99 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=88.5
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCC----CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec-
Q 002873 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP----HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS- 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~----~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s- 351 (872)
..+.|||++||+..+++.+|+..|..+|.|.+|++.. ..--|+||.|.+...+-.|..++.+..|..-.+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 3467999999999999999999999999999998742 22358999999999999999999999887666777776
Q ss_pred -CCCcccchhhhcCChhccHHHHHHhhhccCC
Q 002873 352 -RPGGARRNLMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 352 -~p~~~r~~~~~ql~~~~tq~~l~~~f~~~Gs 382 (872)
+....++.+++.+..+.....+...|..+|-
T Consensus 450 ~kst~ttr~~sgglg~w~p~~~l~r~fd~fGp 481 (975)
T KOG0112|consen 450 PKSTPTTRLQSGGLGPWSPVSRLNREFDRFGP 481 (975)
T ss_pred cccccceeeccCCCCCCChHHHHHHHhhccCc
Confidence 4445566678888888888888888888884
No 173
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.85 E-value=0.012 Score=62.58 Aligned_cols=60 Identities=32% Similarity=0.427 Sum_probs=49.9
Q ss_pred hhHhhhhc-ccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002873 294 DDLRQIFG-AYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 294 edL~e~Fs-~fG~V~~vri~----~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
++|...|+ +||+|+++.+. .+-.|-++|.|...++|++|+..||+..+.|++|..+++--
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45555556 89999998553 23478899999999999999999999999999999988743
No 174
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.81 E-value=0.092 Score=59.87 Aligned_cols=81 Identities=28% Similarity=0.363 Sum_probs=70.8
Q ss_pred ceeEEeecCCCCCCHHHHHHHHhhcCCceeeEEEeeecccccceeEEEEEeccChhHHHHHHHHhcCCcccCCCCccEEE
Q 002873 712 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 791 (872)
Q Consensus 712 rTTvMirNIPnk~t~~~L~~~id~~~~g~ydf~Ylp~df~~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~s~k~~~ 791 (872)
-|+|-|=-+|+.+|.-+|+..+.....---|+--++ | .--|.--+-|-|.+..+|..||+.|||+.++..-.+ +|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR-d--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e-~Ch 149 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR-D--GMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE-VCH 149 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee-c--CCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc-cee
Confidence 589999999999999999999998888888888888 3 444555699999999999999999999999887666 999
Q ss_pred EEeee
Q 002873 792 LAYAR 796 (872)
Q Consensus 792 v~~A~ 796 (872)
|-|+.
T Consensus 150 ll~V~ 154 (493)
T KOG0804|consen 150 LLYVD 154 (493)
T ss_pred EEEEE
Confidence 99964
No 175
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.20 E-value=0.47 Score=55.14 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=89.0
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccCCCC---cEEEEecChhhHHHhhhhhhcccCCcCCCcccccc
Q 002873 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGG---GMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPI 176 (872)
Q Consensus 101 iwNlLp~~~davls~vadel~l~klfsd~~diee-dlf~s~G---gv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l 176 (872)
+|-+.+|-+++.+....-+++--+.-.-. ..+. ..+-.+| -|++.|+.+.+...-+..-.+.+....-.+.....
T Consensus 264 vGGlp~dise~~i~~~F~~FGs~~VdWP~-k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~~~ 342 (520)
T KOG0129|consen 264 VGGLPWDITEAQINASFGQFGSVKVDWPG-KANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSPTI 342 (520)
T ss_pred ecCCCccccHHHHHhhcccccceEeecCC-CccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEecCcc
Confidence 67777777777777766666655422111 1122 3344445 68998886544333222111111111110111111
Q ss_pred CCC----------CCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEeC-----CCcccEEEEEeCC
Q 002873 177 SNG----------VGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFE-QYGDIRTLYTA-----CKHRGFVMISYYD 240 (872)
Q Consensus 177 ~n~----------~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs-~fG~I~~v~~~-----~ksrG~AFVeF~d 240 (872)
... .....-+....-.+.+||||++||.-++.+||..+|+ -||.|..+-+. +-.+|-|=|.|.+
T Consensus 343 k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsn 422 (520)
T KOG0129|consen 343 KDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSN 422 (520)
T ss_pred cccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecc
Confidence 100 0011112233456789999999999999999999999 89999887632 3367999999999
Q ss_pred HHHHHHHHHH
Q 002873 241 IRAARTAMRA 250 (872)
Q Consensus 241 ~e~A~~Ai~~ 250 (872)
..+=.+||.+
T Consensus 423 qqsYi~AIsa 432 (520)
T KOG0129|consen 423 QQAYIKAISA 432 (520)
T ss_pred cHHHHHHHhh
Confidence 9999999984
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.16 E-value=0.1 Score=60.82 Aligned_cols=73 Identities=19% Similarity=0.347 Sum_probs=57.0
Q ss_pred CCCcEEEEcCCCCCCC------HHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccc-cce
Q 002873 192 HPSRTLFVRNINSNVE------DLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRK 260 (872)
Q Consensus 192 ~~srtLfV~NLP~~vt------eeeLr~lFs~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~-gr~ 260 (872)
.-...|+|-|+|---. ..-|.++|+++|+|..++. .+..+||.|++|.+.++|+.|++.|+|+.|. .+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3467899999984322 2335689999999988873 4668999999999999999999999999885 445
Q ss_pred eeee
Q 002873 261 LDIH 264 (872)
Q Consensus 261 L~V~ 264 (872)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 5553
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.97 E-value=0.093 Score=56.78 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=49.3
Q ss_pred hhhHhhhhcccCCeEEEEeC--C-C---CccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002873 293 NDDLRQIFGAYGEVKEIRET--P-H---KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 293 eedL~e~Fs~fG~V~~vri~--~-~---skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
++++++.+++||.|..|-|. + . ..--.||+|...++|.+|+-.|||..|+|+.+...|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 57788999999999887542 1 1 12237999999999999999999999999999887764
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.13 E-value=0.05 Score=58.03 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=47.5
Q ss_pred HHHHHhh-ccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002873 210 ELRSLFE-QYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 210 eLr~lFs-~fG~I~~v~~----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
+|...|+ +||+|+.+.+ ...-.|-+||.|...++|++|+..|++..+.|++|..++..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444444 9999998753 22356789999999999999999999999999999999873
No 179
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.70 E-value=0.44 Score=46.95 Aligned_cols=75 Identities=20% Similarity=0.283 Sum_probs=57.9
Q ss_pred CCCCCCcEEEEcCCCCCCC----HHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002873 189 YGEHPSRTLFVRNINSNVE----DLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vt----eeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
..+.+-.||.|+=|..++. ...+...++.||+|.+|... .+-.|.|.|.|..+|-+|+.+++. ..-|..+++.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c--GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC--GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec--CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 4567788999976665553 34455667899999999654 456899999999999999998876 5567777777
Q ss_pred ec
Q 002873 265 FS 266 (872)
Q Consensus 265 ~a 266 (872)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 75
No 180
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=91.65 E-value=0.17 Score=55.92 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=57.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCC--eEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002873 194 SRTLFVRNINSNVEDLELRSLFEQYGD--IRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~--I~~v~-----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
.-.+||+||-+.+|++||.+.....|- +.+++ ..+.+||||+|...+..+.++-++.|-.+.|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 468999999999999999998877662 33332 56889999999999999999999999888888865444
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.27 E-value=0.61 Score=45.98 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=56.9
Q ss_pred cccccceeeeccCCcc----chhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002873 276 DVNQGTLVVFNLDASV----SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~----TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
+..-.||+|+=|..++ +...+....+.||.|.+|...| +.-|.|.|.|..+|.+|+.+++. ..-|..+++.|-
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 3456788887665554 3334445567899999998765 45699999999999999999875 667888888886
Q ss_pred CC
Q 002873 352 RP 353 (872)
Q Consensus 352 ~p 353 (872)
++
T Consensus 160 qr 161 (166)
T PF15023_consen 160 QR 161 (166)
T ss_pred cc
Confidence 54
No 182
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.20 E-value=0.33 Score=56.62 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=55.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC--cccccceeeee
Q 002873 191 EHPSRTLFVRNINSNVEDLELRSLFEQ--YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIH 264 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~--fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng--~~l~gr~L~V~ 264 (872)
.+..|.|+++-||..+-+|+++.||.. |-++.+|... ...--||.|++..||+.|.+.|.. +.|.|++|..+
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa--~N~nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA--HNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee--ecCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 345678899999999999999999974 7778888632 222358999999999999998865 34677766543
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=91.07 E-value=0.61 Score=46.34 Aligned_cols=74 Identities=24% Similarity=0.377 Sum_probs=52.8
Q ss_pred CCCcEEEEcCCC-----C-CCCH---HHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002873 192 HPSRTLFVRNIN-----S-NVED---LELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 192 ~~srtLfV~NLP-----~-~vte---eeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
.+..||.|.=+. . ..++ .+|.+.|..||+|.-++.. .+.-+|.|.+-+.|-+|+. ++|..+.|+.|.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 456788887665 1 2222 3677889999998877643 3567999999999999998 999999999999
Q ss_pred eeecCCC
Q 002873 263 IHFSIPK 269 (872)
Q Consensus 263 V~~a~pk 269 (872)
|..-.|.
T Consensus 101 i~LKtpd 107 (146)
T PF08952_consen 101 IRLKTPD 107 (146)
T ss_dssp EEE----
T ss_pred EEeCCcc
Confidence 9876543
No 184
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.88 E-value=0.41 Score=51.97 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=55.5
Q ss_pred CcEEEEcCC--CCCCC---HHHHHHHhhccCCeEEEEeC-----CCc-ccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002873 194 SRTLFVRNI--NSNVE---DLELRSLFEQYGDIRTLYTA-----CKH-RGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 194 srtLfV~NL--P~~vt---eeeLr~lFs~fG~I~~v~~~-----~ks-rG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
++.|..+|. +-.++ ++++++-+++||.|..|.+. ... .--.||+|...++|.+|+-.|+|+.|.|+.+.
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 344555555 23343 46788999999999988631 111 22479999999999999999999999999998
Q ss_pred eeecC
Q 002873 263 IHFSI 267 (872)
Q Consensus 263 V~~a~ 267 (872)
..|..
T Consensus 361 A~Fyn 365 (378)
T KOG1996|consen 361 ACFYN 365 (378)
T ss_pred heecc
Confidence 87753
No 185
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.58 E-value=0.34 Score=49.74 Aligned_cols=77 Identities=8% Similarity=0.037 Sum_probs=50.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-cCCe---EEEE--e-----CCCcccEEEEEeCCHHHHHHHHHHhcCccccc--
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQ-YGDI---RTLY--T-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR-- 258 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~-fG~I---~~v~--~-----~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~g-- 258 (872)
....+|.|++||++.|++++.+.+.. ++.- ..+. . ....-.-|||.|.+.+++......++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 44579999999999999999998877 6665 3332 1 11123459999999999999999999988743
Q ss_pred ---ceeeeeecCC
Q 002873 259 ---RKLDIHFSIP 268 (872)
Q Consensus 259 ---r~L~V~~a~p 268 (872)
.+..|++|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2456677654
No 186
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=90.13 E-value=0.17 Score=59.39 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=62.6
Q ss_pred cccceeeeccCCccchhhHhhhhcc-cCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCcee---CCcEEEEEecCC
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGA-YGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI---NGKRIKLEPSRP 353 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~-fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l---~Gr~L~V~~s~p 353 (872)
..+.|+|.||-.-.|.-+|++++.+ .|.|.+..+ .+-+.+|||.|.+.++|.+.+.+|||..+ +++.|.+.|...
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 4578999999999999999999995 556666533 24467899999999999999999999865 568899888765
Q ss_pred C
Q 002873 354 G 354 (872)
Q Consensus 354 ~ 354 (872)
.
T Consensus 522 d 522 (718)
T KOG2416|consen 522 D 522 (718)
T ss_pred h
Confidence 4
No 187
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.85 E-value=1.4 Score=39.89 Aligned_cols=56 Identities=13% Similarity=0.299 Sum_probs=43.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 002873 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 253 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng 253 (872)
+...+|. +|......||.++|+.||.|.--.+ ....|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 4566677 9999999999999999999876554 356799999999999999998764
No 188
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.03 E-value=0.95 Score=51.04 Aligned_cols=71 Identities=23% Similarity=0.493 Sum_probs=58.7
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEeCCC--------CccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002873 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH--------KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~--------skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
+.|.|.||.++.|.++++.+|.-.|+|.++++.+. ....|||.|.|...+..|.. |..+.+-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47999999999999999999999999999987542 24579999999999988876 6667776777766554
No 189
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.98 E-value=0.61 Score=48.30 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=45.8
Q ss_pred chhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhC--CceeCCcEEEEEecCCCc
Q 002873 292 SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN--RSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 292 TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~Ln--G~~l~Gr~L~V~~s~p~~ 355 (872)
..+.|+++|..|+.+.....- ++-+-..|.|.+.++|.+|...|+ +..+.|..++|-|+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 347899999999988877654 234558999999999999999999 999999999999996544
No 190
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=88.79 E-value=0.36 Score=53.41 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=59.7
Q ss_pred cceeeeccCCccchhhHhhhhcccCC--eEEE-----EeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002873 280 GTLVVFNLDASVSNDDLRQIFGAYGE--VKEI-----RETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG~--V~~v-----ri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
-++||+||-+.+|++||.+.....|- |.++ |..+.++|||+|...+..+.++-++.|-.++|.|..-.|-..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 47999999999999999998887662 3333 446789999999999999999999999999999976665444
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=88.14 E-value=0.86 Score=53.37 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=54.5
Q ss_pred ccceeeeccCCccchhhHhhhhcc--cCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC--ceeCCcEEEE
Q 002873 279 QGTLVVFNLDASVSNDDLRQIFGA--YGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR--SDINGKRIKL 348 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~--fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG--~~l~Gr~L~V 348 (872)
.+.|.++-|+..+..|+++.+|+. +-++.+|...-.. --||+|++..||+.|.+.|.. ++|.||+|..
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~--nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND--NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC--ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 467888999999999999999985 6788888763222 369999999999999998854 4778877654
No 192
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=87.93 E-value=0.46 Score=55.92 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=60.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCccc---ccceeeeee
Q 002873 190 GEHPSRTLFVRNINSNVEDLELRSLFE-QYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL---RRRKLDIHF 265 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs-~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l---~gr~L~V~~ 265 (872)
....++.|+|.||=.-+|.-.|+.|+. ..|.|...++ .+-+..|||.|.+.++|.+...+|+|... +.+.|.+.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 456789999999999999999999999 4556666543 35677899999999999999999998654 344555555
Q ss_pred c
Q 002873 266 S 266 (872)
Q Consensus 266 a 266 (872)
.
T Consensus 519 ~ 519 (718)
T KOG2416|consen 519 V 519 (718)
T ss_pred c
Confidence 4
No 193
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.80 E-value=1.7 Score=39.25 Aligned_cols=54 Identities=13% Similarity=0.273 Sum_probs=41.5
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhC
Q 002873 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN 337 (872)
Q Consensus 280 ~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~Ln 337 (872)
...+|. .|..+...||.++|+.||.|.---+.. .-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d---TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND---TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECT---TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC---CcEEEEeecHHHHHHHHHHhc
Confidence 345555 999999999999999999987665543 359999999999999999886
No 194
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=86.54 E-value=2 Score=36.74 Aligned_cols=54 Identities=28% Similarity=0.363 Sum_probs=40.5
Q ss_pred ccceeeeccCCccchhhHhhhhccc----CCeEEEEeCCCCccEEEEEECCHHHHHHHHHHh
Q 002873 279 QGTLVVFNLDASVSNDDLRQIFGAY----GEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL 336 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~f----G~V~~vri~~~skGfaFVeF~~~e~A~kAl~~L 336 (872)
...|+|++++ +++.++++.+|..| +. ..|..... .-|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdD--tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDD--TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecC--CcEEEEECCHHHHHHHHHcC
Confidence 3579999986 58889999999998 42 33332222 24889999999999999865
No 195
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.60 E-value=1.8 Score=47.56 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=50.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccc
Q 002873 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 259 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr 259 (872)
+.=|-|-++|+.- ..-|..+|++||+|.+.. +.....+-+|.|.+..+|++|+. .+|+.|.|.
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv-~~~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHV-TPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeee-cCCCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 4456666777553 456778999999999984 45777799999999999999998 688888764
No 196
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=83.59 E-value=4.9 Score=34.41 Aligned_cols=53 Identities=17% Similarity=0.381 Sum_probs=40.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcc----CCeEEEE-eCCCcccEEEEEeCCHHHHHHHHHHh
Q 002873 194 SRTLFVRNINSNVEDLELRSLFEQY----GDIRTLY-TACKHRGFVMISYYDIRAARTAMRAL 251 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~f----G~I~~v~-~~~ksrG~AFVeF~d~e~A~~Ai~~L 251 (872)
..+|+|+++. +.+.++|+.+|..| ++. +|. +. -.-|=|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWId---DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWID---DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEec---CCcEEEEECCHHHHHHHHHcC
Confidence 3589999996 69999999999999 542 222 22 234789999999999999864
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=82.76 E-value=0.63 Score=51.67 Aligned_cols=77 Identities=14% Similarity=0.314 Sum_probs=60.4
Q ss_pred ccceeeeccCCccchhhHh---hhhcccCCeEEEEeCCCC--------ccEEEEEECCHHHHHHHHHHhCCceeCCcEEE
Q 002873 279 QGTLVVFNLDASVSNDDLR---QIFGAYGEVKEIRETPHK--------RHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~---e~Fs~fG~V~~vri~~~s--------kGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~ 347 (872)
..-+||-+|+..+.++.+. +.|.+||.|..|...... ..-++|+|...++|..||...+|..++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3557888888877555543 678999999999664321 12389999999999999999999999999988
Q ss_pred EEecCCCc
Q 002873 348 LEPSRPGG 355 (872)
Q Consensus 348 V~~s~p~~ 355 (872)
..+...+-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 88877653
No 198
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=79.73 E-value=1.8 Score=46.52 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=51.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCcccEEEEEeCCHHHHHHHHHHhcCc
Q 002873 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNK 254 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~----~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~ 254 (872)
..|||.||..-+..+.|..-|+.||+|.... ..++..+-++|.|...-.|.+|.+.+.-.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccC
Confidence 7899999999999999999999999986533 35667788999999999999999977443
No 199
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=79.72 E-value=1.1 Score=51.65 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=58.1
Q ss_pred eeeeccCCcc-chhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002873 282 LVVFNLDASV-SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 282 LfV~NLp~~~-TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
|-+.-.++.. +.++|...|.+||+|..|.+.-. --.|.|+|.+..+|-+|.. .++..|+++.|+|.|-.+..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 3344444443 56889999999999999987532 4579999999999988866 68999999999999998865
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.23 E-value=3.1 Score=45.72 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=54.4
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcE-EEEEecCC
Q 002873 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR-IKLEPSRP 353 (872)
Q Consensus 279 ~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~-L~V~~s~p 353 (872)
..=|-|.++++.-.. -|..+|++||+|.+.... ....+-.|+|.++-+|++||. -||+.|+|.. |-|+.+..
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 344677777776544 456789999999887543 666799999999999999998 6899999864 44555443
No 201
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=77.39 E-value=3.9 Score=42.44 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=44.9
Q ss_pred CHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhc--CcccccceeeeeecCC
Q 002873 207 EDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFSIP 268 (872)
Q Consensus 207 teeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Ln--g~~l~gr~L~V~~a~p 268 (872)
..+.|+++|..|+.+..+... ++-+=..|.|.+.++|.+|...|+ +..+.|..+++.|+.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 457899999999998887644 344557899999999999999999 8999999999998843
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=76.90 E-value=1.4 Score=53.91 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=60.6
Q ss_pred ceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCcee--CCcEEEEEecCCCc
Q 002873 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI--NGKRIKLEPSRPGG 355 (872)
Q Consensus 281 tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l--~Gr~L~V~~s~p~~ 355 (872)
+..+.|..-.++-.-|..+|.+||.|.+++.- +.-..+.|+|.+.+.|..|+++|+|+++ -|-+.+|.+++.-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTL-RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheec-ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 44556666677888899999999999999753 2345799999999999999999999965 57889999998643
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=76.57 E-value=1.3 Score=49.25 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=58.4
Q ss_pred CcEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEeCCCc------c--cEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002873 194 SRTLFVRNINSNVEDLELR---SLFEQYGDIRTLYTACKH------R--GFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr---~lFs~fG~I~~v~~~~ks------r--G~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
.+-+||-+|+..+.++++. +.|.+||.|..|.+.... . .-++|.|...++|..||...+|..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888888777655544 589999999998743211 1 1389999999999999999999999999988
Q ss_pred eeecCC
Q 002873 263 IHFSIP 268 (872)
Q Consensus 263 V~~a~p 268 (872)
..+..+
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 877654
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=76.08 E-value=1.5 Score=50.58 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=63.5
Q ss_pred CCCCcEEEEcCCCCCC-CHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002873 191 EHPSRTLFVRNINSNV-EDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 191 e~~srtLfV~NLP~~v-teeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
+...+.|-+.-.|... +-++|...|.+||+|..|.+.-. ---|.|+|.+..+|-+|.. ..+..|+++.|+|.|-.+.
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 4566777787788776 46889999999999999976433 4468999999999988776 7899999999999998764
No 205
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=72.64 E-value=25 Score=33.59 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=49.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCccccc
Q 002873 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRR 258 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~-I~~v~~---~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~g 258 (872)
.+....+.+...|+-++.++|..+.+.+-+ |..+++ ...++=.+.+.|.+.++|+.....+||+.+..
T Consensus 10 ~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 10 ERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344556666666777777888877776654 334442 23355579999999999999999999999853
No 206
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=72.50 E-value=4.5 Score=39.68 Aligned_cols=106 Identities=15% Similarity=0.124 Sum_probs=73.9
Q ss_pred CCCHHHHHHHhh----ccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCCCCcccc--
Q 002873 205 NVEDLELRSLFE----QYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVN-- 278 (872)
Q Consensus 205 ~vteeeLr~lFs----~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~-- 278 (872)
..+-..|...+. ..|.+.-. .-..++..++|.+.+++.++++ .....+.+..+.++.-.|...+......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~---~l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~ 103 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIR---DLGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHI 103 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEE---EeCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceecc
Confidence 355555555444 34444332 3357899999999999999987 4556678888888766655444333222
Q ss_pred ccceeeeccCCc-cchhhHhhhhcccCCeEEEEeCCC
Q 002873 279 QGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETPH 314 (872)
Q Consensus 279 ~~tLfV~NLp~~-~TeedL~e~Fs~fG~V~~vri~~~ 314 (872)
.-=|.|.|||.. .+++-|+++-+.+|++.+++....
T Consensus 104 ~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 104 PVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred chhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 234778899988 578889999999999999986543
No 207
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=68.54 E-value=6.5 Score=36.00 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=45.1
Q ss_pred EEEEeCCHHHHHHHHHHhcCc-ccccceeeeeecCCCCCC-----CCccccccceeeeccCCccchhhHhhhhc
Q 002873 234 VMISYYDIRAARTAMRALQNK-PLRRRKLDIHFSIPKDNP-----SEKDVNQGTLVVFNLDASVSNDDLRQIFG 301 (872)
Q Consensus 234 AFVeF~d~e~A~~Ai~~Lng~-~l~gr~L~V~~a~pk~~~-----~~~~~~~~tLfV~NLp~~~TeedL~e~Fs 301 (872)
|+|+|.+..-|++.++.-... .+.+..+.|....-.... -......++|.|.|||...++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999998843222 244555555543211111 01234567899999999999999997654
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=68.51 E-value=3 Score=50.12 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=61.5
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002873 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 278 ~~~tLfV~NLp~~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
...++||+|+...+..+-++.+...+|-|.++... -|||.+|..+..+.+|+..++-..++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~----~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD----KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh----hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 45689999999999999999999999999988653 2999999999999999999998999998887765
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=67.51 E-value=14 Score=32.25 Aligned_cols=58 Identities=24% Similarity=0.390 Sum_probs=34.4
Q ss_pred ccchhhHhhhhcccC-----CeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002873 290 SVSNDDLRQIFGAYG-----EVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 290 ~~TeedL~e~Fs~fG-----~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
.++..+|..++...+ .|-.|++. ..|.||+-... .|..+++.|++..+.|++|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 466677777776553 45666764 46899998754 788999999999999999999875
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=67.26 E-value=3.5 Score=50.69 Aligned_cols=73 Identities=21% Similarity=0.335 Sum_probs=59.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCccc--ccceeeeeecCCC
Q 002873 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL--RRRKLDIHFSIPK 269 (872)
Q Consensus 196 tLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l--~gr~L~V~~a~pk 269 (872)
+.++.|.+-..+-.-|..+|.+||.|.+.+.. +.-..|.|+|...+.|..|+.+|+|+.+ -|.+.+|.++.+-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTL-RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheec-ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 33444555677888999999999999998742 4556899999999999999999999986 4788888887654
No 211
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=59.59 E-value=91 Score=34.67 Aligned_cols=146 Identities=18% Similarity=0.319 Sum_probs=92.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCC------------cccEEEEEeCCHHHHHHHHH----HhcC-
Q 002873 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK------------HRGFVMISYYDIRAARTAMR----ALQN- 253 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~k------------srG~AFVeF~d~e~A~~Ai~----~Lng- 253 (872)
+--+|.|...|+..+++--++...|.+||+|++|++... ......+.|.+.+.|-.... .|..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999999999999999985322 24678999999988866443 2322
Q ss_pred -cccccceeeeeecCCC----C--CCCCcc----------------ccccceeeeccCCccchhh-Hhhhh---cccCC-
Q 002873 254 -KPLRRRKLDIHFSIPK----D--NPSEKD----------------VNQGTLVVFNLDASVSNDD-LRQIF---GAYGE- 305 (872)
Q Consensus 254 -~~l~gr~L~V~~a~pk----~--~~~~~~----------------~~~~tLfV~NLp~~~Teed-L~e~F---s~fG~- 305 (872)
+.++...|.+.|..-+ . +..+.. ..++.|.|. +...+..++ +.+.+ ..=+.
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~ 170 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNK 170 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCc
Confidence 3466777777765321 1 000000 113455554 233343333 22222 11132
Q ss_pred ---eEEEEeCC-------CCccEEEEEECCHHHHHHHHHHhC
Q 002873 306 ---VKEIRETP-------HKRHHKFIEFYDVRAAEAALRALN 337 (872)
Q Consensus 306 ---V~~vri~~-------~skGfaFVeF~~~e~A~kAl~~Ln 337 (872)
+++|.+.. -++.||.+.|-+..-|.+.++.|.
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 44444321 146899999999999999998775
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=57.09 E-value=39 Score=29.35 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=43.0
Q ss_pred CCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002873 205 NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 205 ~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
.++-++++..+..|+-.. |.. ...| -||.|.+.++|++++...+++.+..-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-I~~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-IRD--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce-EEe--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999999997543 322 2334 489999999999999999999887766654
No 213
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=56.88 E-value=33 Score=29.77 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=43.8
Q ss_pred ccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEE
Q 002873 290 SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKL 348 (872)
Q Consensus 290 ~~TeedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V 348 (872)
.++-++++..+..|+- ..|+. ...|| ||.|.+.++|+++.+..+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678899999999973 44443 23453 89999999999999999999998887765
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=53.11 E-value=9.1 Score=46.19 Aligned_cols=70 Identities=21% Similarity=0.224 Sum_probs=61.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
.+.-++||+|+...+..+-++.+...+|-|.++... -|+|.+|.....+.+|+..+.-..+.+..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~----~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD----KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh----hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 456899999999999999999999999999887532 2999999999999999998888888888776654
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.80 E-value=50 Score=39.64 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=60.7
Q ss_pred CCCCCCCcEEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEe---------------CCC------------------
Q 002873 188 PYGEHPSRTLFVRNINSN-VEDLELRSLFEQY----GDIRTLYT---------------ACK------------------ 229 (872)
Q Consensus 188 ~~~e~~srtLfV~NLP~~-vteeeLr~lFs~f----G~I~~v~~---------------~~k------------------ 229 (872)
+.....+++|-|.|+.++ +..++|.-+|..| |.|.+|.+ .++
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 344667899999999986 7889999998865 47887752 222
Q ss_pred -------------------cccEEEEEeCCHHHHHHHHHHhcCcccc--cceeeeeec
Q 002873 230 -------------------HRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFS 266 (872)
Q Consensus 230 -------------------srG~AFVeF~d~e~A~~Ai~~Lng~~l~--gr~L~V~~a 266 (872)
..=||.|+|.+++.|.+....++|..|. +..|.++|-
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0127999999999999999999999986 445666664
No 216
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=48.95 E-value=21 Score=36.85 Aligned_cols=75 Identities=21% Similarity=0.296 Sum_probs=50.4
Q ss_pred ceeeeccCCccc-----hhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCc-EEEEEecCCC
Q 002873 281 TLVVFNLDASVS-----NDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGK-RIKLEPSRPG 354 (872)
Q Consensus 281 tLfV~NLp~~~T-----eedL~e~Fs~fG~V~~vri~~~skGfaFVeF~~~e~A~kAl~~LnG~~l~Gr-~L~V~~s~p~ 354 (872)
++.+.+++..+- ......+|..|-+..-.++. ++.++.-|-|.+.+.|..|...+++..|.|+ .+++-++++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 455666655432 22334555555443333322 2445677899999999999999999999998 8888888876
Q ss_pred cc
Q 002873 355 GA 356 (872)
Q Consensus 355 ~~ 356 (872)
..
T Consensus 91 ~~ 92 (193)
T KOG4019|consen 91 HP 92 (193)
T ss_pred Cc
Confidence 43
No 217
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=47.92 E-value=1e+02 Score=36.11 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=53.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCC-eEE---EEeCCCcccEEEEEeCCHHHHHHHHHHhcCccccc
Q 002873 194 SRTLFVRNINSNVEDLELRSLFEQYGD-IRT---LYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR 258 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~-I~~---v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~g 258 (872)
++.|.|--+|..++-.||..+...+-. |.. |+..-+.+=.++|.|.+.++|......+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 899999999999999999998886543 333 43333455579999999999999999999998864
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=46.65 E-value=77 Score=27.63 Aligned_cols=59 Identities=12% Similarity=0.219 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHhhccCC-----eEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002873 204 SNVEDLELRSLFEQYGD-----IRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 204 ~~vteeeLr~lFs~fG~-----I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
..++..+|..++..-+. |-.|.+. ..|+||+-.. +.|+.+++.|++..++|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35778888888877654 4556543 4588888665 4888999999999999999999864
No 219
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.68 E-value=80 Score=38.04 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=56.4
Q ss_pred cccceeeeccCCc-cchhhHhhhhccc----CCeEEEEeC---------------CC-----------------------
Q 002873 278 NQGTLVVFNLDAS-VSNDDLRQIFGAY----GEVKEIRET---------------PH----------------------- 314 (872)
Q Consensus 278 ~~~tLfV~NLp~~-~TeedL~e~Fs~f----G~V~~vri~---------------~~----------------------- 314 (872)
.+++|-|-|++++ +.-++|.-+|..| |.|.+|.|. +.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4678999999987 6788999888876 588888541 11
Q ss_pred --------------CccEEEEEECCHHHHHHHHHHhCCceeCC--cEEEEEe
Q 002873 315 --------------KRHHKFIEFYDVRAAEAALRALNRSDING--KRIKLEP 350 (872)
Q Consensus 315 --------------skGfaFVeF~~~e~A~kAl~~LnG~~l~G--r~L~V~~ 350 (872)
.--||.|+|.+.+.|.+....++|.++.. ..|-+.|
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 01369999999999999999999999874 4455544
No 220
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.29 E-value=54 Score=37.65 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=44.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCC----eEEEEeCCCcccEEEEEeCCHHHHHHHHH
Q 002873 192 HPSRTLFVRNINSNVEDLELRSLFEQYGD----IRTLYTACKHRGFVMISYYDIRAARTAMR 249 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~----I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~ 249 (872)
.--+.|-|.++|.....+||...|+.|+. |.-| ....||-.|.+...|..|+.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv-----DdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV-----DDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEe-----ecceeEEeecchHHHHHHhh
Confidence 34689999999999999999999999985 3333 34578999999999999997
No 221
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=31.04 E-value=75 Score=35.01 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=37.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHH
Q 002873 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIR 242 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e 242 (872)
.+-|+|+||+.++--.||+..+.+-|-+---..-.-+.|-||++|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 4569999999999999999999887754221122346788999998753
No 222
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=28.56 E-value=22 Score=38.71 Aligned_cols=62 Identities=27% Similarity=0.474 Sum_probs=43.6
Q ss_pred cEEEEcCCCCC------------CCHHHHHHHhhccCCeEEEEe----------CCCc-----ccE---------EEEEe
Q 002873 195 RTLFVRNINSN------------VEDLELRSLFEQYGDIRTLYT----------ACKH-----RGF---------VMISY 238 (872)
Q Consensus 195 rtLfV~NLP~~------------vteeeLr~lFs~fG~I~~v~~----------~~ks-----rG~---------AFVeF 238 (872)
.||++.+||-. -+++-|+..|+.||.|+.|.+ +++. .|| |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 57888888742 357889999999999998862 2232 233 45667
Q ss_pred CCHHHHHHHHHHhcCccc
Q 002873 239 YDIRAARTAMRALQNKPL 256 (872)
Q Consensus 239 ~d~e~A~~Ai~~Lng~~l 256 (872)
.....-..|+.+|.|.++
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 666667778888877664
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=26.70 E-value=55 Score=33.93 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=52.7
Q ss_pred CcEEEEcCCCCCCC-H----HHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccc-eeeeeecC
Q 002873 194 SRTLFVRNINSNVE-D----LELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDIHFSI 267 (872)
Q Consensus 194 srtLfV~NLP~~vt-e----eeLr~lFs~fG~I~~v~~~~ksrG~AFVeF~d~e~A~~Ai~~Lng~~l~gr-~L~V~~a~ 267 (872)
.+++.+.+|+..+- + .....+|.+|-+...... -++.+..-|.|.+++.|..|...++...|.|+ .++.-++.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 35678888876542 2 233456666665444332 24667788999999999999999999999988 77777765
Q ss_pred C
Q 002873 268 P 268 (872)
Q Consensus 268 p 268 (872)
+
T Consensus 89 ~ 89 (193)
T KOG4019|consen 89 P 89 (193)
T ss_pred C
Confidence 4
Done!