Query 002874
Match_columns 872
No_of_seqs 783 out of 3263
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 12:32:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 5E-74 1.1E-78 638.1 25.7 512 133-848 2-520 (549)
2 PF04059 RRM_2: RNA recognitio 100.0 6.1E-46 1.3E-50 338.1 11.1 97 712-808 1-97 (97)
3 KOG0110 RNA-binding protein (R 100.0 3.8E-34 8.2E-39 326.0 12.1 349 26-419 246-663 (725)
4 TIGR01628 PABP-1234 polyadenyl 100.0 2E-28 4.4E-33 289.6 24.2 296 25-360 41-370 (562)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.1E-27 2.3E-32 283.4 22.4 286 101-418 5-333 (562)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.9E-27 6.3E-32 263.1 19.9 156 193-352 2-169 (352)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 9.1E-27 2E-31 259.2 23.4 236 101-356 8-351 (352)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 5.6E-26 1.2E-30 264.1 27.7 305 25-354 37-480 (481)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 5.7E-26 1.2E-30 264.0 26.4 273 101-382 7-420 (481)
10 TIGR01659 sex-lethal sex-letha 99.9 1.4E-26 3.1E-31 257.4 20.2 164 189-356 102-277 (346)
11 KOG0148 Apoptosis-promoting RN 99.9 1.3E-24 2.9E-29 224.6 16.7 163 194-357 62-241 (321)
12 TIGR01645 half-pint poly-U bin 99.9 2.5E-24 5.4E-29 251.6 19.6 163 192-354 105-284 (612)
13 TIGR01648 hnRNP-R-Q heterogene 99.9 6E-24 1.3E-28 248.1 22.6 229 101-356 63-309 (578)
14 KOG0144 RNA-binding protein CU 99.9 2.4E-23 5.2E-28 226.3 24.3 164 192-358 32-210 (510)
15 KOG0117 Heterogeneous nuclear 99.9 3.4E-24 7.5E-29 233.9 12.3 164 192-358 162-335 (506)
16 TIGR01648 hnRNP-R-Q heterogene 99.9 4E-23 8.7E-28 241.2 21.6 219 149-382 18-261 (578)
17 KOG0145 RNA-binding protein EL 99.9 1.7E-23 3.7E-28 214.8 14.2 235 101-354 45-358 (360)
18 TIGR01622 SF-CC1 splicing fact 99.9 6.7E-23 1.5E-27 236.4 19.0 163 190-353 85-265 (457)
19 KOG0117 Heterogeneous nuclear 99.9 1.8E-22 3.8E-27 220.6 19.5 181 192-382 81-285 (506)
20 KOG0145 RNA-binding protein EL 99.9 3.7E-23 8E-28 212.3 13.2 160 191-354 38-209 (360)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.2E-22 1.1E-26 231.9 24.2 250 101-353 180-501 (509)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.5E-22 1.2E-26 231.7 20.4 165 188-354 169-375 (509)
23 TIGR01622 SF-CC1 splicing fact 99.9 3.1E-21 6.6E-26 222.6 23.7 243 101-354 94-448 (457)
24 KOG0127 Nucleolar protein fibr 99.9 3.4E-21 7.4E-26 214.3 17.6 166 194-359 117-383 (678)
25 KOG0109 RNA-binding protein LA 99.8 3E-21 6.5E-26 201.6 10.8 149 195-355 3-151 (346)
26 KOG0131 Splicing factor 3b, su 99.8 1.1E-20 2.3E-25 186.5 11.9 163 192-357 7-180 (203)
27 KOG0123 Polyadenylate-binding 99.8 5.7E-20 1.2E-24 206.0 17.2 250 138-418 35-318 (369)
28 KOG0123 Polyadenylate-binding 99.8 1E-19 2.2E-24 203.9 15.4 294 25-359 36-354 (369)
29 KOG0127 Nucleolar protein fibr 99.8 1.5E-19 3.3E-24 201.3 15.4 162 195-356 6-198 (678)
30 KOG0144 RNA-binding protein CU 99.8 1.3E-18 2.7E-23 189.8 12.1 245 101-356 39-506 (510)
31 TIGR01645 half-pint poly-U bin 99.8 5.7E-17 1.2E-21 190.2 24.2 157 101-267 112-282 (612)
32 KOG0110 RNA-binding protein (R 99.8 2.5E-18 5.4E-23 197.4 12.3 161 196-356 517-695 (725)
33 KOG0148 Apoptosis-promoting RN 99.7 6.3E-18 1.4E-22 175.4 11.6 161 192-382 4-190 (321)
34 KOG0124 Polypyrimidine tract-b 99.7 6.5E-18 1.4E-22 180.4 10.4 157 194-352 113-288 (544)
35 KOG4206 Spliceosomal protein s 99.7 1.6E-16 3.5E-21 162.5 15.5 162 191-352 6-220 (221)
36 KOG0146 RNA-binding protein ET 99.7 5.3E-17 1.1E-21 167.9 10.6 166 193-358 18-369 (371)
37 KOG0105 Alternative splicing f 99.6 1E-15 2.3E-20 151.3 12.8 149 192-342 4-176 (241)
38 KOG4212 RNA-binding protein hn 99.6 3.8E-13 8.3E-18 147.1 31.8 159 193-351 43-291 (608)
39 KOG0147 Transcriptional coacti 99.6 2.2E-16 4.7E-21 177.7 6.4 164 189-353 174-357 (549)
40 KOG4205 RNA-binding protein mu 99.6 2E-15 4.3E-20 164.7 9.6 163 193-357 5-179 (311)
41 KOG0147 Transcriptional coacti 99.5 7E-14 1.5E-18 157.6 13.3 161 192-352 276-526 (549)
42 TIGR01659 sex-lethal sex-letha 99.5 6.3E-14 1.4E-18 156.6 10.6 106 277-382 105-219 (346)
43 KOG0106 Alternative splicing f 99.5 5.4E-14 1.2E-18 145.4 6.5 148 195-348 2-165 (216)
44 KOG1457 RNA binding protein (c 99.4 5.1E-13 1.1E-17 135.9 12.2 149 193-341 33-273 (284)
45 PLN03134 glycine-rich RNA-bind 99.4 6.5E-13 1.4E-17 131.0 10.0 78 278-355 33-115 (144)
46 PLN03134 glycine-rich RNA-bind 99.4 1.5E-12 3.3E-17 128.3 12.3 80 191-270 31-115 (144)
47 KOG1548 Transcription elongati 99.4 7.8E-12 1.7E-16 134.4 16.9 165 191-355 131-353 (382)
48 KOG1190 Polypyrimidine tract-b 99.3 1.7E-11 3.7E-16 133.9 14.8 160 194-353 297-490 (492)
49 KOG1190 Polypyrimidine tract-b 99.3 1.1E-11 2.4E-16 135.3 13.2 164 192-355 148-374 (492)
50 KOG0124 Polypyrimidine tract-b 99.3 1.7E-11 3.7E-16 131.8 13.5 161 101-265 118-286 (544)
51 PF00076 RRM_1: RNA recognitio 99.3 8.1E-12 1.8E-16 105.8 6.8 66 282-347 1-70 (70)
52 PF00076 RRM_1: RNA recognitio 99.2 1.6E-11 3.5E-16 104.0 7.6 66 197-262 1-70 (70)
53 KOG0107 Alternative splicing f 99.2 1.1E-11 2.5E-16 122.4 7.2 77 193-269 9-85 (195)
54 KOG4212 RNA-binding protein hn 99.2 3.6E-10 7.7E-15 124.3 17.1 70 280-351 537-608 (608)
55 KOG0107 Alternative splicing f 99.2 1.8E-11 3.8E-16 121.1 6.3 77 279-355 10-86 (195)
56 COG0724 RNA-binding proteins ( 99.2 1.3E-10 2.7E-15 121.2 12.4 119 194-312 115-258 (306)
57 KOG0131 Splicing factor 3b, su 99.2 4.5E-11 9.8E-16 118.9 7.8 129 278-418 8-146 (203)
58 KOG4211 Splicing factor hnRNP- 99.2 2.3E-10 5E-15 128.1 13.1 157 194-353 10-181 (510)
59 KOG0120 Splicing factor U2AF, 99.2 1.6E-10 3.4E-15 132.4 12.0 165 190-354 285-492 (500)
60 KOG0125 Ataxin 2-binding prote 99.2 6.4E-11 1.4E-15 126.6 8.2 77 278-354 95-174 (376)
61 KOG0114 Predicted RNA-binding 99.1 1.2E-10 2.6E-15 106.1 8.4 79 191-269 15-95 (124)
62 KOG0121 Nuclear cap-binding pr 99.1 6.3E-11 1.4E-15 111.7 6.5 76 191-266 33-113 (153)
63 KOG0122 Translation initiation 99.1 2.3E-10 5E-15 118.4 10.0 80 190-269 185-269 (270)
64 KOG0121 Nuclear cap-binding pr 99.1 1E-10 2.2E-15 110.3 6.5 76 278-353 35-115 (153)
65 KOG0114 Predicted RNA-binding 99.1 4.4E-10 9.5E-15 102.5 10.0 100 278-381 17-118 (124)
66 PLN03120 nucleic acid binding 99.1 2.3E-10 4.9E-15 121.6 9.2 75 279-354 4-80 (260)
67 PLN03120 nucleic acid binding 99.1 3.5E-10 7.6E-15 120.2 10.6 75 194-269 4-80 (260)
68 KOG0109 RNA-binding protein LA 99.1 8.7E-11 1.9E-15 123.9 5.9 99 281-382 4-104 (346)
69 KOG0122 Translation initiation 99.1 2.3E-10 4.9E-15 118.5 8.0 77 278-354 188-269 (270)
70 KOG4660 Protein Mei2, essentia 99.1 1.4E-10 3.1E-15 131.6 6.2 163 191-356 72-252 (549)
71 smart00362 RRM_2 RNA recogniti 99.1 5.5E-10 1.2E-14 93.3 8.2 69 281-349 1-72 (72)
72 PF14259 RRM_6: RNA recognitio 99.1 4.5E-10 9.7E-15 96.1 7.7 66 282-347 1-70 (70)
73 KOG0125 Ataxin 2-binding prote 99.1 4.2E-10 9.1E-15 120.5 8.9 79 191-269 93-174 (376)
74 PF14259 RRM_6: RNA recognitio 99.0 5.6E-10 1.2E-14 95.5 7.8 66 197-262 1-70 (70)
75 PLN03213 repressor of silencin 99.0 4.9E-10 1.1E-14 124.5 8.9 118 192-312 8-136 (759)
76 KOG1456 Heterogeneous nuclear 99.0 2.6E-09 5.7E-14 115.7 13.5 173 184-357 21-202 (494)
77 KOG4207 Predicted splicing fac 99.0 2.2E-10 4.8E-15 115.8 5.0 75 279-353 13-92 (256)
78 PF13893 RRM_5: RNA recognitio 99.0 1.1E-09 2.3E-14 90.3 8.0 56 296-351 1-56 (56)
79 smart00362 RRM_2 RNA recogniti 99.0 1.5E-09 3.1E-14 90.7 8.5 69 196-264 1-72 (72)
80 PLN03213 repressor of silencin 99.0 7E-10 1.5E-14 123.3 7.9 77 278-354 9-88 (759)
81 KOG0113 U1 small nuclear ribon 99.0 1.8E-09 3.9E-14 114.6 9.3 78 190-267 97-179 (335)
82 KOG0105 Alternative splicing f 99.0 7.5E-10 1.6E-14 110.2 5.7 78 278-355 5-84 (241)
83 KOG0113 U1 small nuclear ribon 99.0 1.9E-09 4.1E-14 114.4 9.0 90 267-356 89-183 (335)
84 KOG4207 Predicted splicing fac 99.0 1.1E-09 2.3E-14 110.9 6.8 79 189-267 8-91 (256)
85 KOG0149 Predicted RNA-binding 98.9 7.6E-10 1.6E-14 114.3 5.6 81 276-357 9-94 (247)
86 cd00590 RRM RRM (RNA recogniti 98.9 4.2E-09 9.2E-14 88.3 8.6 70 281-350 1-74 (74)
87 PLN03121 nucleic acid binding 98.9 3.6E-09 7.9E-14 110.9 9.1 73 279-352 5-79 (243)
88 PLN03121 nucleic acid binding 98.9 5.1E-09 1.1E-13 109.9 9.6 73 194-267 5-79 (243)
89 PF13893 RRM_5: RNA recognitio 98.9 4.9E-09 1.1E-13 86.3 7.5 56 211-266 1-56 (56)
90 KOG1456 Heterogeneous nuclear 98.9 1.1E-07 2.5E-12 103.3 19.8 163 191-353 117-362 (494)
91 smart00360 RRM RNA recognition 98.9 4.7E-09 1E-13 87.1 7.1 66 284-349 1-71 (71)
92 cd00590 RRM RRM (RNA recogniti 98.9 8.4E-09 1.8E-13 86.5 8.7 70 196-265 1-74 (74)
93 KOG0149 Predicted RNA-binding 98.9 3.7E-09 8E-14 109.3 7.0 77 190-267 8-89 (247)
94 KOG0111 Cyclophilin-type pepti 98.8 1.7E-09 3.7E-14 110.1 4.1 82 278-359 9-95 (298)
95 smart00360 RRM RNA recognition 98.8 8.6E-09 1.9E-13 85.5 7.6 66 199-264 1-71 (71)
96 COG0724 RNA-binding proteins ( 98.8 1.1E-08 2.3E-13 106.7 8.8 75 279-353 115-194 (306)
97 KOG0111 Cyclophilin-type pepti 98.8 4.9E-09 1.1E-13 106.8 4.9 80 192-271 8-92 (298)
98 KOG0130 RNA-binding protein RB 98.8 9.9E-09 2.1E-13 97.7 5.5 80 275-354 68-152 (170)
99 KOG0129 Predicted RNA-binding 98.8 9.2E-08 2E-12 108.4 14.2 143 190-335 255-432 (520)
100 KOG0108 mRNA cleavage and poly 98.7 2.3E-08 5.1E-13 114.1 7.3 79 280-358 19-102 (435)
101 KOG0108 mRNA cleavage and poly 98.7 2.6E-08 5.6E-13 113.7 7.6 76 195-270 19-99 (435)
102 smart00361 RRM_1 RNA recogniti 98.6 6.6E-08 1.4E-12 83.6 7.0 57 293-349 2-70 (70)
103 KOG0126 Predicted RNA-binding 98.6 8.8E-09 1.9E-13 102.6 1.5 75 278-352 34-113 (219)
104 KOG0126 Predicted RNA-binding 98.6 4.9E-09 1.1E-13 104.4 -0.3 76 192-267 33-113 (219)
105 KOG4206 Spliceosomal protein s 98.6 4.6E-08 1E-12 101.0 6.7 76 280-355 10-91 (221)
106 KOG0112 Large RNA-binding prot 98.6 1.7E-08 3.7E-13 119.7 3.7 160 190-356 368-533 (975)
107 KOG1365 RNA-binding protein Fu 98.6 1.3E-07 2.8E-12 103.2 10.1 210 141-353 103-361 (508)
108 KOG0132 RNA polymerase II C-te 98.6 6.2E-08 1.3E-12 113.4 8.1 75 194-269 421-495 (894)
109 KOG0120 Splicing factor U2AF, 98.6 7E-08 1.5E-12 111.0 8.2 169 188-358 169-373 (500)
110 KOG0130 RNA-binding protein RB 98.6 6E-08 1.3E-12 92.5 6.3 78 192-269 70-152 (170)
111 KOG4205 RNA-binding protein mu 98.5 2.5E-07 5.4E-12 101.7 9.7 79 193-272 96-179 (311)
112 KOG0153 Predicted RNA-binding 98.5 2.5E-07 5.5E-12 100.3 8.4 84 185-269 219-303 (377)
113 KOG4211 Splicing factor hnRNP- 98.5 1.3E-06 2.9E-11 98.6 13.5 205 139-347 48-351 (510)
114 smart00361 RRM_1 RNA recogniti 98.4 4.1E-07 9E-12 78.6 6.8 56 208-263 2-69 (70)
115 KOG0153 Predicted RNA-binding 98.4 3.9E-07 8.4E-12 98.9 7.3 78 275-353 224-302 (377)
116 KOG4454 RNA binding protein (R 98.4 9.8E-08 2.1E-12 97.7 2.0 137 192-342 7-151 (267)
117 KOG0132 RNA polymerase II C-te 98.4 5.8E-07 1.3E-11 105.5 7.9 80 278-358 420-499 (894)
118 KOG0128 RNA-binding protein SA 98.4 6E-08 1.3E-12 114.9 -0.3 141 192-353 665-814 (881)
119 KOG0415 Predicted peptidyl pro 98.3 5.8E-07 1.3E-11 97.4 5.8 77 278-354 238-319 (479)
120 KOG0146 RNA-binding protein ET 98.3 7.9E-07 1.7E-11 93.3 6.1 81 191-271 282-367 (371)
121 KOG4210 Nuclear localization s 98.3 8E-07 1.7E-11 97.2 5.7 165 192-357 86-267 (285)
122 KOG4208 Nucleolar RNA-binding 98.2 4.4E-06 9.5E-11 85.4 8.4 81 189-269 44-130 (214)
123 KOG4208 Nucleolar RNA-binding 98.2 3.4E-06 7.3E-11 86.3 7.5 78 277-354 47-130 (214)
124 KOG0415 Predicted peptidyl pro 98.2 2.3E-06 5E-11 92.8 6.1 79 190-268 235-318 (479)
125 KOG0226 RNA-binding proteins [ 98.2 1E-06 2.2E-11 92.2 3.1 159 197-355 99-271 (290)
126 KOG0106 Alternative splicing f 98.1 3.2E-06 6.9E-11 88.2 4.3 99 281-382 3-125 (216)
127 PF03467 Smg4_UPF3: Smg-4/UPF3 98.0 3.7E-06 8E-11 85.9 4.4 90 710-799 5-99 (176)
128 KOG1457 RNA binding protein (c 98.0 1.4E-05 3E-10 82.4 7.7 81 278-358 33-122 (284)
129 KOG4661 Hsp27-ERE-TATA-binding 97.9 1.3E-05 2.9E-10 91.2 6.1 74 280-353 406-484 (940)
130 KOG0533 RRM motif-containing p 97.9 3.1E-05 6.6E-10 82.5 8.2 78 191-268 80-161 (243)
131 KOG4661 Hsp27-ERE-TATA-binding 97.9 3.7E-05 8E-10 87.6 8.9 76 192-267 403-483 (940)
132 KOG0151 Predicted splicing reg 97.9 2.6E-05 5.7E-10 91.1 7.5 80 188-267 168-255 (877)
133 KOG2193 IGF-II mRNA-binding pr 97.8 1.6E-06 3.4E-11 95.8 -2.8 149 195-352 2-155 (584)
134 KOG0116 RasGAP SH3 binding pro 97.7 4.1E-05 8.9E-10 87.5 6.5 74 192-266 286-364 (419)
135 KOG0533 RRM motif-containing p 97.7 6.7E-05 1.5E-09 80.0 7.5 77 278-354 82-162 (243)
136 KOG0116 RasGAP SH3 binding pro 97.7 3.8E-05 8.2E-10 87.8 5.8 76 280-356 289-369 (419)
137 KOG1365 RNA-binding protein Fu 97.7 0.00039 8.5E-09 76.6 12.2 153 193-347 59-236 (508)
138 KOG4676 Splicing factor, argin 97.6 2.1E-05 4.6E-10 86.6 2.3 158 195-354 8-226 (479)
139 KOG0151 Predicted splicing reg 97.6 7E-05 1.5E-09 87.7 5.9 78 276-353 171-256 (877)
140 KOG4209 Splicing factor RNPS1, 97.6 9.2E-05 2E-09 78.8 5.7 78 276-354 98-180 (231)
141 KOG4307 RNA binding protein RB 97.5 0.00016 3.5E-09 84.4 7.0 167 188-355 305-515 (944)
142 PF11608 Limkain-b1: Limkain b 97.5 0.00037 7.9E-09 62.2 7.6 68 195-267 3-75 (90)
143 KOG1548 Transcription elongati 97.4 0.00027 5.8E-09 77.3 6.5 74 279-352 134-219 (382)
144 PF04059 RRM_2: RNA recognitio 97.4 0.00076 1.6E-08 62.4 8.5 73 195-267 2-85 (97)
145 KOG4209 Splicing factor RNPS1, 97.3 0.00025 5.3E-09 75.6 5.2 78 189-267 96-178 (231)
146 PF11608 Limkain-b1: Limkain b 97.3 0.00068 1.5E-08 60.6 6.4 69 280-353 3-76 (90)
147 KOG4454 RNA binding protein (R 97.3 0.00018 3.9E-09 74.3 3.1 74 278-352 8-85 (267)
148 KOG0128 RNA-binding protein SA 97.2 0.00013 2.8E-09 87.4 1.1 177 193-383 570-763 (881)
149 KOG0226 RNA-binding proteins [ 97.1 0.00088 1.9E-08 70.7 6.8 76 192-267 188-268 (290)
150 PF08777 RRM_3: RNA binding mo 97.1 0.0008 1.7E-08 63.2 5.7 71 281-352 3-78 (105)
151 KOG4210 Nuclear localization s 96.8 0.0027 5.9E-08 69.8 7.3 164 101-270 93-265 (285)
152 KOG1855 Predicted RNA-binding 96.6 0.0021 4.5E-08 72.2 4.8 142 110-256 138-311 (484)
153 COG5175 MOT2 Transcriptional r 96.6 0.0053 1.1E-07 67.0 7.6 76 279-354 114-203 (480)
154 PF08777 RRM_3: RNA binding mo 96.5 0.0076 1.6E-07 56.7 7.1 59 195-254 2-60 (105)
155 KOG2193 IGF-II mRNA-binding pr 96.5 0.0022 4.8E-08 71.6 3.8 101 280-383 2-107 (584)
156 COG5175 MOT2 Transcriptional r 96.3 0.0061 1.3E-07 66.5 6.0 88 192-288 112-213 (480)
157 KOG1855 Predicted RNA-binding 96.2 0.0053 1.1E-07 69.1 5.2 66 274-339 226-309 (484)
158 KOG1295 Nonsense-mediated deca 96.2 0.0027 5.8E-08 70.9 2.8 74 710-784 5-80 (376)
159 PF14605 Nup35_RRM_2: Nup53/35 96.1 0.012 2.6E-07 48.4 5.6 52 195-248 2-53 (53)
160 KOG0115 RNA-binding protein p5 96.1 0.011 2.3E-07 62.9 6.1 89 242-341 5-97 (275)
161 PF14605 Nup35_RRM_2: Nup53/35 96.0 0.012 2.6E-07 48.4 4.9 52 280-333 2-53 (53)
162 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.021 4.5E-07 53.3 6.9 73 278-352 5-90 (100)
163 KOG4307 RNA binding protein RB 95.9 0.019 4.2E-07 67.8 7.7 71 194-264 867-942 (944)
164 KOG3152 TBP-binding protein, a 95.6 0.0088 1.9E-07 63.5 3.0 69 192-260 72-157 (278)
165 KOG1995 Conserved Zn-finger pr 95.5 0.01 2.3E-07 65.7 3.5 78 278-355 65-155 (351)
166 KOG2314 Translation initiation 95.4 0.03 6.4E-07 65.0 6.8 74 277-350 56-140 (698)
167 PF05172 Nup35_RRM: Nup53/35/4 95.4 0.036 7.7E-07 51.7 6.0 72 193-266 5-89 (100)
168 KOG3152 TBP-binding protein, a 95.3 0.0072 1.6E-07 64.1 1.4 68 278-345 73-157 (278)
169 PF07576 BRAP2: BRCA1-associat 95.3 0.14 3.1E-06 48.6 9.8 85 711-798 11-96 (110)
170 KOG1995 Conserved Zn-finger pr 95.2 0.016 3.5E-07 64.2 3.9 77 191-267 63-152 (351)
171 KOG0112 Large RNA-binding prot 95.2 0.0078 1.7E-07 73.0 1.4 106 277-382 370-481 (975)
172 PF08952 DUF1866: Domain of un 95.0 0.065 1.4E-06 53.0 6.8 74 278-355 26-108 (146)
173 KOG2202 U2 snRNP splicing fact 94.9 0.011 2.4E-07 62.8 1.5 60 294-353 83-147 (260)
174 KOG0804 Cytoplasmic Zn-finger 94.9 0.087 1.9E-06 60.0 8.3 81 712-796 74-154 (493)
175 KOG2314 Translation initiation 94.7 0.083 1.8E-06 61.5 7.8 73 192-264 56-139 (698)
176 KOG0129 Predicted RNA-binding 94.7 0.32 7E-06 56.5 12.3 149 101-250 264-432 (520)
177 KOG1996 mRNA splicing factor [ 94.6 0.058 1.3E-06 58.3 5.7 61 293-353 300-366 (378)
178 KOG2202 U2 snRNP splicing fact 93.5 0.041 8.9E-07 58.7 2.1 59 209-267 83-146 (260)
179 PF15023 DUF4523: Protein of u 92.7 0.42 9.1E-06 47.1 7.5 75 189-266 81-159 (166)
180 PF15023 DUF4523: Protein of u 92.3 0.39 8.4E-06 47.3 6.7 75 276-353 83-161 (166)
181 KOG2591 c-Mpl binding protein, 91.7 0.28 6.1E-06 57.2 5.9 72 191-264 172-247 (684)
182 PF08952 DUF1866: Domain of un 91.7 0.48 1E-05 47.0 6.7 74 192-269 25-107 (146)
183 KOG4849 mRNA cleavage factor I 91.6 0.17 3.6E-06 55.9 3.8 70 194-263 80-156 (498)
184 KOG2416 Acinus (induces apopto 91.2 0.12 2.7E-06 60.5 2.3 76 278-354 443-522 (718)
185 KOG1996 mRNA splicing factor [ 90.9 0.4 8.7E-06 52.1 5.7 74 194-267 281-365 (378)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 90.8 0.32 7E-06 50.0 4.8 78 192-269 5-98 (176)
187 KOG2416 Acinus (induces apopto 90.5 0.23 5E-06 58.3 3.7 77 189-266 439-519 (718)
188 PF08675 RNA_bind: RNA binding 90.1 1.2 2.6E-05 40.2 7.0 56 194-253 9-64 (87)
189 KOG2135 Proteins containing th 90.1 0.3 6.4E-06 56.2 4.1 73 281-355 374-447 (526)
190 PF08675 RNA_bind: RNA binding 89.0 1.3 2.8E-05 40.1 6.4 54 280-337 10-63 (87)
191 KOG2591 c-Mpl binding protein, 88.7 0.76 1.7E-05 53.8 6.1 70 278-349 174-247 (684)
192 PF04847 Calcipressin: Calcipr 88.6 0.66 1.4E-05 48.0 5.1 63 292-355 8-72 (184)
193 KOG4849 mRNA cleavage factor I 88.6 0.38 8.1E-06 53.3 3.4 73 279-351 80-159 (498)
194 PF10309 DUF2414: Protein of u 87.4 1.7 3.6E-05 37.2 5.9 54 279-336 5-62 (62)
195 KOG4676 Splicing factor, argin 87.2 1.4 3.1E-05 49.7 6.9 72 280-352 8-87 (479)
196 PF10309 DUF2414: Protein of u 84.4 4.3 9.4E-05 34.7 6.9 52 195-251 6-62 (62)
197 KOG4285 Mitotic phosphoprotein 83.0 1.8 3.9E-05 47.5 5.1 63 194-259 197-259 (350)
198 KOG2068 MOT2 transcription fac 82.0 0.7 1.5E-05 51.3 1.6 77 279-355 77-164 (327)
199 PF04847 Calcipressin: Calcipr 80.0 3.1 6.6E-05 43.2 5.4 61 207-268 8-70 (184)
200 KOG4285 Mitotic phosphoprotein 80.0 2.8 6.1E-05 46.0 5.2 71 279-352 197-268 (350)
201 KOG0115 RNA-binding protein p5 79.9 1.8 3.8E-05 46.6 3.7 60 195-254 32-95 (275)
202 KOG2068 MOT2 transcription fac 78.3 1.1 2.3E-05 49.9 1.6 76 194-269 77-163 (327)
203 KOG2135 Proteins containing th 78.3 1.2 2.6E-05 51.4 2.0 77 191-269 369-446 (526)
204 KOG4574 RNA-binding protein (c 74.1 1.9 4.1E-05 52.9 2.2 73 281-354 300-374 (1007)
205 PF14111 DUF4283: Domain of un 72.4 4.5 9.7E-05 39.7 4.1 109 205-314 28-140 (153)
206 PF07576 BRAP2: BRCA1-associat 71.8 26 0.00056 33.4 8.8 66 192-257 11-80 (110)
207 PF07292 NID: Nmi/IFP 35 domai 71.3 5.8 0.00012 36.3 4.1 68 234-301 1-74 (88)
208 KOG4574 RNA-binding protein (c 68.7 3.2 6.9E-05 51.1 2.4 72 197-269 301-374 (1007)
209 KOG2253 U1 snRNP complex, subu 68.0 3.1 6.7E-05 50.0 2.1 69 278-350 39-107 (668)
210 PF03880 DbpA: DbpA RNA bindin 66.5 15 0.00033 32.1 5.7 58 290-351 12-74 (74)
211 PF11767 SET_assoc: Histone ly 59.3 28 0.00061 30.2 5.9 55 290-348 11-65 (66)
212 PF11767 SET_assoc: Histone ly 55.8 41 0.00089 29.2 6.3 55 205-263 11-65 (66)
213 KOG2253 U1 snRNP complex, subu 55.2 7.7 0.00017 46.8 2.4 70 192-265 38-107 (668)
214 PF03880 DbpA: DbpA RNA bindin 50.9 59 0.0013 28.4 6.7 59 204-266 11-74 (74)
215 KOG2318 Uncharacterized conser 49.7 60 0.0013 39.0 8.3 79 188-266 168-305 (650)
216 KOG4019 Calcineurin-mediated s 45.9 25 0.00054 36.3 4.0 74 281-355 12-91 (193)
217 KOG0804 Cytoplasmic Zn-finger 35.9 1.1E+02 0.0023 36.0 7.3 64 194-257 74-141 (493)
218 PF10567 Nab6_mRNP_bdg: RNA-re 33.5 48 0.001 36.8 4.0 146 191-337 12-212 (309)
219 KOG2318 Uncharacterized conser 32.1 1E+02 0.0022 37.2 6.5 73 278-350 173-304 (650)
220 KOG2891 Surface glycoprotein [ 30.1 20 0.00043 39.1 0.4 62 195-256 150-247 (445)
221 KOG4483 Uncharacterized conser 25.8 77 0.0017 36.5 4.1 133 105-261 323-456 (528)
222 KOG4410 5-formyltetrahydrofola 24.7 67 0.0014 35.4 3.2 48 194-242 330-378 (396)
223 KOG4019 Calcineurin-mediated s 20.6 75 0.0016 33.0 2.5 73 195-268 11-89 (193)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5e-74 Score=638.12 Aligned_cols=512 Identities=53% Similarity=0.770 Sum_probs=377.8
Q ss_pred cc-cccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHH
Q 002874 133 ED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLEL 211 (872)
Q Consensus 133 ee-dlfss~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeL 211 (872)
++ ++|..+|+++++.+.-..+.. + + ...+..+.+..++|..+ .++ +| .+|
T Consensus 2 ~d~~lf~~~G~~el~~~~~~~~~~---~---------~-----~~~n~~~~~~~~~P~~~--s~~-~~---------~~l 52 (549)
T KOG4660|consen 2 EDCDLFSSGGGMELDADSFDNLSV---R---------N-----SDRNSAGFVFPEHPPGE--SRT-FV---------SEL 52 (549)
T ss_pred CccccccCCCCCCcccccccchhh---c---------c-----cccCCCccccCCCCCCC--CCC-Ch---------hhH
Confidence 55 899999999887664333222 1 0 11244556778888887 666 77 788
Q ss_pred HHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCCCCccccccceeeeccCCcc
Q 002874 212 RSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASV 291 (872)
Q Consensus 212 r~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~~ 291 (872)
..+|+.|+ +.+ +++.+.+++.++++|+|.|||.++
T Consensus 53 ~a~f~~~~----------------------------------~p~-----------~~~np~~~~~~~~~L~v~nl~~~V 87 (549)
T KOG4660|consen 53 SALFEPFN----------------------------------KPL-----------RPDNPSEKDMNQGTLVVFNLPRSV 87 (549)
T ss_pred HhhhhccC----------------------------------CCC-----------CcCCCCcccCccceEEEEecCCcC
Confidence 99999881 111 125667778899999999999999
Q ss_pred chhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcccchhhhcCChhccHH
Q 002874 292 SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARRNLMQQLNQELEQD 371 (872)
Q Consensus 292 teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r~~~v~ql~~~~~q~ 371 (872)
++++|+++|+.||+|+.|+.+...+|.+||+|.|+.+|++|+++|++.+|.|++|+ ++++.++..+-+..
T Consensus 88 sn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~~~~------ 157 (549)
T KOG4660|consen 88 SNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGLQSG------ 157 (549)
T ss_pred CHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchhccc------
Confidence 99999999999999999999999999999999999999999999999999999999 77777776554443
Q ss_pred HHHHhhhccCCCCCCCCCCCccccCCCcccCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCcccC
Q 002874 372 EARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPINSNPLHAFSKSTGLATPTPVNSNHLPGLASIL 451 (872)
Q Consensus 372 ~~~~~f~~~Gsp~~~spp~~~s~~gsp~~~~~m~~~s~s~gfg~v~p~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~ 451 (872)
..+..++++|+++++|+.|. ++..||.|.|....-+..+
T Consensus 158 --~~~~~~~~~p~a~s~pgg~~---------------~~~~~g~l~P~~s~~~~~~------------------------ 196 (549)
T KOG4660|consen 158 --TSFLNHFGSPLANSPPGGWP---------------RGQLFGMLSPTRSSILLEH------------------------ 196 (549)
T ss_pred --chhhhhccchhhcCCCCCCc---------------CCcceeeeccchhhhhhhc------------------------
Confidence 56778999999999999997 3455666776522111111
Q ss_pred CCCCCCCCcccCCCCcccccccccccccccccccccccccCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCC
Q 002874 452 PPHLSNTGKIAPIGKDQGRANQTNHMFSNSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSSGVGTLSGPQFLWG 531 (872)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 531 (872)
+++. -....+...+... ++.|.+ +. ..-+|.++|... |..+++..++.+++++--+|+
T Consensus 197 ---~~~~-~~~~~~~~~~~~~--hq~~~~--~~----~~~s~a~~~~~~----------G~~~s~~~~v~t~S~~~g~~n 254 (549)
T KOG4660|consen 197 ---ISSV-DGSSPGRETPLLN--HQRFVE--FA----DNRSYAFSEPRG----------GFLISNSSGVITFSGPGGVWN 254 (549)
T ss_pred ---chhc-cCccccccccchh--hhhhhh--hc----cccchhhcccCC----------ceecCCCCceEEecCCCcccC
Confidence 1110 0000011122222 233322 11 123446666521 666667778888888744441
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccccCCCCCCCCCcCCCCCCC
Q 002874 532 SPPPYSERSSSSAWPTSSVGHPFSSSGQGQGFPYGSRHGSFIGSHHQHHVGSAPSGVSLDRNFGFFPESPETSFTNPVPL 611 (872)
Q Consensus 532 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsap~~~~~~~~~~~~~~s~~~~~~~~~~~ 611 (872)
++.+..+ .-.....++|||||+||+..+ ....
T Consensus 255 ---------------------~~~~~r~---------~~~~~~~~~~~hi~~~Ps~~~------------------l~~~ 286 (549)
T KOG4660|consen 255 ---------------------PFPSRRQ---------RQNSSSSHYEHHIGSAPSMHH------------------LLSR 286 (549)
T ss_pred ---------------------Ccccccc---------ccccCcccccCccCCCccccc------------------cccc
Confidence 1211111 111223457899999997222 1122
Q ss_pred CCCCCCCCCCCcccccC--Cccc-cCCCCccCCCCCCCccccCCCCCCCcccCCCCCCCCCCCCCccc---ccccccccc
Q 002874 612 GGMGLSRNNAGYMMNVG--GRVG-VGLPLNVTDNGSPSLRMMSFPRHGPLFFGNGSYSGLGTTSNEAF---TERGRTRRV 685 (872)
Q Consensus 612 ~~~g~~~~~g~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~---~~r~r~rr~ 685 (872)
+++++.+..|++.++-. +..| ....+++++..+.++++.+.+++.. .|. ++. ...+..+.. .+..+.||.
T Consensus 287 ~~~~f~~~s~~~~~~~~~~~n~g~~~~t~~~~e~~s~n~~~e~~~rv~~-~f~-~~~--~~~~~~~~~~~~~~~~~~~Rt 362 (549)
T KOG4660|consen 287 ISVGFNGGSGALEMNSNGQANQGFLTKTGNVTEFNSKNVGMESSPRVPK-NFE-GRR--SYTSQNDYPVELILNYRDRRT 362 (549)
T ss_pred CccccCCCCCCccccccccCCCCccccCcccccccCCCccccccCCCCc-ccc-ccc--ccccccccccccccccccchh
Confidence 33444444444322211 1222 2356778888899999999999887 672 332 223334444 347777888
Q ss_pred ccCCCCcccccccccChhhhhcCCCcceeEEeecCCCCCCHHHHHHHHhhcCCceeeEEEeeecccccceeEEEEEeccC
Q 002874 686 ENCGSQVDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVS 765 (872)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~i~~g~d~rTTvMirNIPnk~t~~~L~~~id~~~~~~ydf~Ylp~df~~~~n~gyaFinf~~ 765 (872)
+....+.+ ++++.+|+.+|.+|+|.|||+||||||||||++||++. ||.++|+|||+||||||+|+||||||||||++
T Consensus 363 t~~i~ni~-n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~s 440 (549)
T KOG4660|consen 363 TVMIKNIP-NKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNKCNVGYAFINMTS 440 (549)
T ss_pred hhhhhccc-cchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEeccccccccccceeEEeecC
Confidence 77665554 89999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCcccCCCCccEEEEEeeeccchHHHHHHhccCccccCCCCeeeeEEecCCCCCCcccccCCCCcccc
Q 002874 766 PSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAALVTHFQNSSLMNEDKRCRPIVFHSEGQETSDQEALLSSNLNIF 845 (872)
Q Consensus 766 ~~~~~~f~~~f~g~~w~~~~s~k~~~v~~A~iQG~~~l~~~~~~s~~~~~~~~~~P~~f~~~~~~~~~~~~~~~~~~~~~ 845 (872)
|++|++||++|||++|++|+|+|||+|+|||||||++|++|||||++|||++.|+|++|++ ++.|.+|++|... +++
T Consensus 441 p~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~p--p~dg~~~~~p~~~-~~~ 517 (549)
T KOG4660|consen 441 PEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSP--PEDGREEPEPVKL-NQD 517 (549)
T ss_pred HHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecC--cccccccCccccc-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999998 7899999999888 766
Q ss_pred ccC
Q 002874 846 IRQ 848 (872)
Q Consensus 846 ~~~ 848 (872)
.+.
T Consensus 518 a~~ 520 (549)
T KOG4660|consen 518 AGA 520 (549)
T ss_pred CCC
Confidence 443
No 2
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=6.1e-46 Score=338.07 Aligned_cols=97 Identities=66% Similarity=1.209 Sum_probs=96.4
Q ss_pred ceeEEeecCCCCCCHHHHHHHHhhcCCceeeEEEeeecccccceeEEEEEeccChhHHHHHHHHhcCCcccCCCCccEEE
Q 002874 712 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 791 (872)
Q Consensus 712 rTTvMirNIPnk~t~~~L~~~id~~~~~~ydf~Ylp~df~~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~s~k~~~ 791 (872)
|||||||||||||||+||+++||+.++|+||||||||||+++||+|||||||+++++|.+|++.|+|++|+.++|+|||+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccchHHHHHHhc
Q 002874 792 LAYARIQGQAALVTHFQ 808 (872)
Q Consensus 792 v~~A~iQG~~~l~~~~~ 808 (872)
|+||||||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999997
No 3
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=3.8e-34 Score=326.01 Aligned_cols=349 Identities=18% Similarity=0.225 Sum_probs=270.0
Q ss_pred cccccccccCCchhhHHHHhcCCcccccccCcccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCcccccc--ccC
Q 002874 26 KKVGSGAWGISFGTEANNASNDASLFSSSLPVLPHEKLNFADSEHHDQSVDDSSPTLNKIDLENESNGPLAGVET--IGS 103 (872)
Q Consensus 26 ~~~~~~tf~~p~~A~~a~~~~d~s~Fqgrl~hil~~k~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~k~~ee~e~--iwN 103 (872)
+.+++++|++|++||+||..+|+.+|||||+||||.+.+.+.. .+.+...++||+ +++++++...+. .||
T Consensus 246 ~lfa~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k~~~~----~~~~~~~~~~k~----~ke~~rk~~~~~~~~wn 317 (725)
T KOG0110|consen 246 KLFAFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEKSTAK----EDASELGSDYKK----EKELKRKAASASFHSWN 317 (725)
T ss_pred HhhHHHhhhhhHHHHhhhhhccccccccceeeecCcchhhhhh----hhHhhcCCcHHH----HHHhccccchhcceecc
Confidence 4569999999999999999999999999999999999876433 222223344776 677788875555 999
Q ss_pred CCCcchhHHHhhcccccccccCCCccccccccccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCCCCcc
Q 002874 104 LLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTV 183 (872)
Q Consensus 104 lLp~~~dav~s~vadel~l~klfsd~~dieedlfss~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~~~~~ 183 (872)
+|++++++++..++.++++.+ +++.+.+ .+ |. .|..+..|++.....+.++.+.++... .+.
T Consensus 318 ~l~~~~~ava~~~a~k~~v~k--~~i~d~~--~~---gs-avr~al~etr~~~e~~~~~ee~gV~l~----~F~------ 379 (725)
T KOG0110|consen 318 TLFMGANAVAGILAQKLGVEK--SRILDGS--LS---GS-AVRLALGETRVVQEVRRFFEENGVKLD----AFS------ 379 (725)
T ss_pred cccccccHHHHHHHHHhCCee--eeeechh--hc---ch-HHHHHHHHhhhchhhhhhHHhhCcccc----cch------
Confidence 999999999999999999998 4343322 22 22 455677888888888777665543322 121
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002874 184 AGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 184 ~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
..++..+.|+|+|||..+..++|..+|..||+|.++ +.++..-.|+|+|.+..+|++|++.|++..+...++++
T Consensus 380 -----~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rv-llp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyl 453 (725)
T KOG0110|consen 380 -----QAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRV-LLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYL 453 (725)
T ss_pred -----hhhhhcceeeeccCccccccHHHHHHhhccccccee-ecCcccceeeeeecCccchHHHHHHhchhhhccCcccc
Confidence 156788999999999999999999999999999999 44555556999999999999999999999999999999
Q ss_pred eecCCCC-------C-------------CCC------------cc-------------ccc-cceeeeccCCccchhhHh
Q 002874 264 HFSIPKD-------N-------------PSE------------KD-------------VNQ-GTLVVFNLDASVSNDDLR 297 (872)
Q Consensus 264 ~~a~pk~-------~-------------~~~------------~~-------------~~~-~tLfV~NLp~~~teedLr 297 (872)
.|+.... . +.+ .+ ... ++|||+||+++++.++|.
T Consensus 454 e~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~ 533 (725)
T KOG0110|consen 454 EWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLE 533 (725)
T ss_pred ccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHH
Confidence 9863110 0 000 00 011 249999999999999999
Q ss_pred hhhcccCCeEEEEeCCC--------CccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC--------CCc---c--
Q 002874 298 QIFGAYGEVKEIRETPH--------KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR--------PGG---A-- 356 (872)
Q Consensus 298 e~Fs~fG~V~~vri~~~--------skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~--------p~~---~-- 356 (872)
.+|.++|.|.++.|..+ ++|||||+|++.++|++|++.|+|+.|+||.|.|+++. ++. .
T Consensus 534 ~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~ 613 (725)
T KOG0110|consen 534 DLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKG 613 (725)
T ss_pred HHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccccccccccccc
Confidence 99999999999976422 46999999999999999999999999999999999998 211 1
Q ss_pred cchhhhcCChhccHHHHHHhhhccCCCCCCCCCCCccccCCCcccCCCCCCCCCCCCCCCCCC
Q 002874 357 RRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPI 419 (872)
Q Consensus 357 r~~~v~ql~~~~~q~~~~~~f~~~Gsp~~~spp~~~s~~gsp~~~~~m~~~s~s~gfg~v~p~ 419 (872)
.+.++++++++++..+++.+|..||.-..-. -|.. ...+-.+||+|+.-.
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvR---------lPKK----~~k~a~rGF~Fv~f~ 663 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSVR---------LPKK----IGKGAHRGFGFVDFL 663 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeeec---------cchh----hcchhhccceeeecc
Confidence 1347899999999999999999998432221 1221 234456789887543
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=2e-28 Score=289.56 Aligned_cols=296 Identities=19% Similarity=0.240 Sum_probs=223.7
Q ss_pred CcccccccccCCchhhHHHHhcCCcccccccCcccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCcccccc--cc
Q 002874 25 PKKVGSGAWGISFGTEANNASNDASLFSSSLPVLPHEKLNFADSEHHDQSVDDSSPTLNKIDLENESNGPLAGVET--IG 102 (872)
Q Consensus 25 ~~~~~~~tf~~p~~A~~a~~~~d~s~Fqgrl~hil~~k~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~k~~ee~e~--iw 102 (872)
.++.|+++|..+++|.+|+..+++..|.|+-+.|...+... . .++..... +.
T Consensus 41 s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~---------------~-----------~~~~~~~~vfV~ 94 (562)
T TIGR01628 41 SLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP---------------S-----------LRRSGVGNIFVK 94 (562)
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc---------------c-----------ccccCCCceEEc
Confidence 56899999999999999999999998989888776532100 0 01111223 88
Q ss_pred CCCCcchhHHHhhcccccccccCCCccccccc-ccc-----CCCCcEEEEecChhhHHHhhhhhhcccCCcCCCcccccc
Q 002874 103 SLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLF-----DSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPI 176 (872)
Q Consensus 103 NlLp~~~dav~s~vadel~l~klfsd~~diee-dlf-----ss~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l 176 (872)
||.++.+++.+..++.++| .|.+ .+. .+.|.++|+|+..+.+..++.+++..... +..+.+...
T Consensus 95 nLp~~~~~~~L~~~F~~~G---------~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~-~~~i~v~~~ 164 (562)
T TIGR01628 95 NLDKSVDNKALFDTFSKFG---------NILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLN-DKEVYVGRF 164 (562)
T ss_pred CCCccCCHHHHHHHHHhcC---------CcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEec-CceEEEecc
Confidence 9988876666666555444 3333 221 23466899999999999999877622111 111111000
Q ss_pred CCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhc
Q 002874 177 SNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQ 252 (872)
Q Consensus 177 ~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~~srG~AFVeF~~~e~A~~Ai~~Ln 252 (872)
.. ..... .......++|||+|||.++|+++|+++|++||+|.++.+ .++++|||||+|.+.++|.+|++.|+
T Consensus 165 ~~---~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~ 240 (562)
T TIGR01628 165 IK---KHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMN 240 (562)
T ss_pred cc---ccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 00 00000 112345678999999999999999999999999999874 35678999999999999999999999
Q ss_pred Ccccc----cceeeeeecCCCCCCC--------------CccccccceeeeccCCccchhhHhhhhcccCCeEEEEe---
Q 002874 253 NKPLR----RRKLDIHFSIPKDNPS--------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--- 311 (872)
Q Consensus 253 g~~l~----gr~L~V~~a~pk~~~~--------------~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri--- 311 (872)
+..+. |+.|+|.++..+.... .......+|||+||+.++++++|+++|++||.|++|++
T Consensus 241 g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d 320 (562)
T TIGR01628 241 GKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD 320 (562)
T ss_pred CcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC
Confidence 99999 9999999886554321 01223467999999999999999999999999999976
Q ss_pred -CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcccchh
Q 002874 312 -TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARRNL 360 (872)
Q Consensus 312 -~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r~~~ 360 (872)
++.++|||||+|.+.++|.+|++.|||..|+|++|.|.++.++..++..
T Consensus 321 ~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~ 370 (562)
T TIGR01628 321 EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAH 370 (562)
T ss_pred CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHH
Confidence 4567899999999999999999999999999999999999988776543
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.1e-27 Score=283.43 Aligned_cols=286 Identities=20% Similarity=0.296 Sum_probs=219.1
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-ccc------CCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccc
Q 002874 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLF------DSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAH 173 (872)
Q Consensus 101 iwNlLp~~~dav~s~vadel~l~klfsd~~diee-dlf------ss~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~ 173 (872)
++||.++.+++-+..+ |+.++.|.+ .+. .+.|.++|+|...+.+.+++..++..... +..+.+
T Consensus 5 VgnLp~~vte~~L~~~---------F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~-gk~i~i 74 (562)
T TIGR01628 5 VGDLDPDVTEAKLYDL---------FKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG-GKPIRI 74 (562)
T ss_pred EeCCCCCCCHHHHHHH---------HHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-CeeEEe
Confidence 7888887666666554 445555555 332 23466899999999999999877643221 111111
Q ss_pred cccCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHH
Q 002874 174 YPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMR 249 (872)
Q Consensus 174 ~~l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~~srG~AFVeF~~~e~A~~Ai~ 249 (872)
... ..+........++|||+|||.++++++|+++|++||.|.+|++ .++++|||||+|.+.++|++|++
T Consensus 75 ~~s-------~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~ 147 (562)
T TIGR01628 75 MWS-------QRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQ 147 (562)
T ss_pred ecc-------cccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHH
Confidence 000 0111112233568999999999999999999999999999874 35689999999999999999999
Q ss_pred HhcCcccccceeeeeecCCCCCC-CCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEEC
Q 002874 250 ALQNKPLRRRKLDIHFSIPKDNP-SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFY 324 (872)
Q Consensus 250 ~Lng~~l~gr~L~V~~a~pk~~~-~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri----~~~skG~gFVeF~ 324 (872)
.++|..+.++.|+|....++... .......++|||+||+.++|+++|+++|++||.|.++++ .++++|||||+|.
T Consensus 148 ~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~ 227 (562)
T TIGR01628 148 KVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFE 227 (562)
T ss_pred HhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEEC
Confidence 99999999999999876655433 123334578999999999999999999999999999876 3456899999999
Q ss_pred CHHHHHHHHHHhCCceeC----CcEEEEEecCCCccc----------------------chhhhcCChhccHHHHHHhhh
Q 002874 325 DVRAAEAALRALNRSDIN----GKRIKLEPSRPGGAR----------------------RNLMQQLNQELEQDEARGFRH 378 (872)
Q Consensus 325 ~~e~A~kAl~~LnG~~l~----Gr~L~V~~s~p~~~r----------------------~~~v~ql~~~~~q~~~~~~f~ 378 (872)
+.++|.+|++.|+|..|. |+.|.|.+++++..+ ..+++++...+++++++.+|.
T Consensus 228 ~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~ 307 (562)
T TIGR01628 228 KHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFS 307 (562)
T ss_pred CHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHH
Confidence 999999999999999999 999999998776544 136788999999999999999
Q ss_pred ccCCCCCCCCCCCccccCCCcccCCCCC-CCCCCCCCCCCC
Q 002874 379 QVGSPVTNSPPGTWAQFGSPVERNPLHA-FSKSPGLGTLSP 418 (872)
Q Consensus 379 ~~Gsp~~~spp~~~s~~gsp~~~~~m~~-~s~s~gfg~v~p 418 (872)
+||.. .....|.+ .++++|||||.-
T Consensus 308 ~~G~i---------------~~~~i~~d~~g~~~g~gfV~f 333 (562)
T TIGR01628 308 ECGEI---------------TSAKVMLDEKGVSRGFGFVCF 333 (562)
T ss_pred hcCCe---------------EEEEEEECCCCCcCCeEEEEe
Confidence 88842 22333333 578889999853
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=2.9e-27 Score=263.14 Aligned_cols=156 Identities=22% Similarity=0.411 Sum_probs=140.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002874 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
+.++|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|+|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999874 46789999999999999999999999999999999999997
Q ss_pred CCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 002874 268 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (872)
Q Consensus 268 pk~~~~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~ 342 (872)
++... ....+|||+|||..+++++|+++|++||.|..+++ .+.++|||||+|.+.++|++|++.|||..+.
T Consensus 82 ~~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred ccccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 65432 34568999999999999999999999999998865 3456899999999999999999999999998
Q ss_pred C--cEEEEEecC
Q 002874 343 G--KRIKLEPSR 352 (872)
Q Consensus 343 G--r~L~V~~s~ 352 (872)
| .+|.|.++.
T Consensus 158 g~~~~i~v~~a~ 169 (352)
T TIGR01661 158 GCTEPITVKFAN 169 (352)
T ss_pred CCceeEEEEECC
Confidence 7 578888875
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=9.1e-27 Score=259.17 Aligned_cols=236 Identities=18% Similarity=0.263 Sum_probs=181.1
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccC------CCCcEEEEecChhhHHHhhhhhhcccCCcCCCccc
Q 002874 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFD------SGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAH 173 (872)
Q Consensus 101 iwNlLp~~~dav~s~vadel~l~klfsd~~diee-dlfs------s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~ 173 (872)
++||.+...++-+. .+|+.+++|.+ .+.. +.|.++|+|...+.+..++..++.... .+..+.+
T Consensus 8 V~nLp~~~~e~~l~---------~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l-~g~~i~v 77 (352)
T TIGR01661 8 VNYLPQTMTQEEIR---------SLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL-QNKTIKV 77 (352)
T ss_pred EeCCCCCCCHHHHH---------HHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE-CCeeEEE
Confidence 78888874444444 47777777777 4432 335689999999999999887663221 1111111
Q ss_pred cccCCCCCcccCCCC-CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHH
Q 002874 174 YPISNGVGTVAGEHP-YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTA 247 (872)
Q Consensus 174 ~~l~n~~~~~~g~~~-~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~A 247 (872)
....+ ......++|||+|||..+++++|+++|++||.|..+++ .+.++|||||+|.+.++|++|
T Consensus 78 ----------~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~a 147 (352)
T TIGR01661 78 ----------SYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRA 147 (352)
T ss_pred ----------EeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 00111 11234679999999999999999999999999988773 356799999999999999999
Q ss_pred HHHhcCccccc--ceeeeeecCCCCCCCC----------------c----------------------------------
Q 002874 248 MRALQNKPLRR--RKLDIHFSIPKDNPSE----------------K---------------------------------- 275 (872)
Q Consensus 248 i~~Lng~~l~g--r~L~V~~a~pk~~~~~----------------~---------------------------------- 275 (872)
++.|+|..+.| .+|.|.|+........ .
T Consensus 148 i~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (352)
T TIGR01661 148 IKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLA 227 (352)
T ss_pred HHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhh
Confidence 99999999876 5788888643320000 0
Q ss_pred --------------------------------------cccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----C
Q 002874 276 --------------------------------------DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----T 312 (872)
Q Consensus 276 --------------------------------------~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~ 312 (872)
.....+|||+|||+++++++|+++|++||.|.+|++ +
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t 307 (352)
T TIGR01661 228 HQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTT 307 (352)
T ss_pred hhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCC
Confidence 000125999999999999999999999999999976 5
Q ss_pred CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002874 313 PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 313 ~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
+.++|||||+|.+.++|.+|+..|||..|+||+|+|.|...+..
T Consensus 308 ~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 308 NQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 66799999999999999999999999999999999999987764
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=5.6e-26 Score=264.10 Aligned_cols=305 Identities=20% Similarity=0.206 Sum_probs=218.5
Q ss_pred CcccccccccCCchhhHHHHh--cCCcccccccCcccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCcccccc--
Q 002874 25 PKKVGSGAWGISFGTEANNAS--NDASLFSSSLPVLPHEKLNFADSEHHDQSVDDSSPTLNKIDLENESNGPLAGVET-- 100 (872)
Q Consensus 25 ~~~~~~~tf~~p~~A~~a~~~--~d~s~Fqgrl~hil~~k~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~k~~ee~e~-- 100 (872)
.++.|++.|..+++|.+|... +++..+.||-+.|-.++.+...... + . + .........-.
T Consensus 37 ~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~-----~--~-------~--~~~~~~~~~~~v~ 100 (481)
T TIGR01649 37 GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDG-----N--S-------D--FDSAGPNKVLRVI 100 (481)
T ss_pred CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCC-----C--C-------c--ccCCCCCceEEEE
Confidence 468999999999999999986 4678899998888765533211100 0 0 0 00000111112
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccCCCC--cEEEEecChhhHHHhhhhhhcccCCcCC--------
Q 002874 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGG--GMELEFEPHESLSIGVSKLNISDGIAGT-------- 169 (872)
Q Consensus 101 iwNlLp~~~dav~s~vadel~l~klfsd~~diee-dlfss~G--gv~V~~d~~esa~~a~~k~~~~~~~~~n-------- 169 (872)
+.|+.+..+++.+.. +|+.+++|.. .++...+ .++|+|+..+.+.+|+..++-.+.....
T Consensus 101 v~nl~~~vt~~~L~~---------~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 101 VENPMYPITLDVLYQ---------IFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred EcCCCCCCCHHHHHH---------HHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 789887655655555 5556667777 6666544 4899999999999998877744321100
Q ss_pred ---Cccc---------c---ccC---------------C-------------CCCcc------------cC---------
Q 002874 170 ---GIAH---------Y---PIS---------------N-------------GVGTV------------AG--------- 185 (872)
Q Consensus 170 ---gv~~---------~---~l~---------------n-------------~~~~~------------~g--------- 185 (872)
.+.+ + .++ . +-+.. .+
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 0000 0 000 0 00000 00
Q ss_pred ---------------CCCCCCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHH
Q 002874 186 ---------------EHPYGEHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMR 249 (872)
Q Consensus 186 ---------------~~~~~e~~srtLfV~NLP~-~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~ 249 (872)
..+....++++|||+|||. .+++++|+++|++||.|.+|++....+|||||+|.+.++|++|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~ 331 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALT 331 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 0001134678999999997 699999999999999999999766678999999999999999999
Q ss_pred HhcCcccccceeeeeecCCCCCCCC------------c---------------------cccccceeeeccCCccchhhH
Q 002874 250 ALQNKPLRRRKLDIHFSIPKDNPSE------------K---------------------DVNQGTLVVFNLDASVSNDDL 296 (872)
Q Consensus 250 ~Lng~~l~gr~L~V~~a~pk~~~~~------------~---------------------~~~~~tLfV~NLp~~~teedL 296 (872)
.|+|..|.|++|+|.++..+..... + .....+|||+|||.++++++|
T Consensus 332 ~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L 411 (481)
T TIGR01649 332 HLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDL 411 (481)
T ss_pred HhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHH
Confidence 9999999999999998754311000 0 012458999999999999999
Q ss_pred hhhhcccCC--eEEEEeCCC---CccEEEEEECCHHHHHHHHHHhCCceeCCcE------EEEEecCCC
Q 002874 297 RQIFGAYGE--VKEIRETPH---KRHHKFIEFYDVRAAEAALRALNRSDINGKR------IKLEPSRPG 354 (872)
Q Consensus 297 re~Fs~fG~--V~~vri~~~---skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~------L~V~~s~p~ 354 (872)
+++|+.||. |+.|++.+. ++++|||+|.+.++|.+||..|||+.|+|+. |+|.|++++
T Consensus 412 ~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 412 KELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999998 888877433 3789999999999999999999999999985 999999874
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=5.7e-26 Score=264.02 Aligned_cols=273 Identities=19% Similarity=0.215 Sum_probs=201.5
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccCCCCcEEEEecChhhHHHhhhhhhcccCCcC-CCcccc-ccC
Q 002874 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAG-TGIAHY-PIS 177 (872)
Q Consensus 101 iwNlLp~~~dav~s~vadel~l~klfsd~~diee-dlfss~Ggv~V~~d~~esa~~a~~k~~~~~~~~~-ngv~~~-~l~ 177 (872)
++||.++.+++.+.. +|+.++.|.. .+....+.++|+|+..+++..++..+........ ..+.+. ...
T Consensus 7 V~nLp~~~te~~L~~---------~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 7 VRNLPQDVVEADLVE---------ALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred EcCCCCCCCHHHHHH---------HHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 688888755544444 6667777777 6777778899999999999999886542211111 111110 000
Q ss_pred CCCCccc-CC-CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCC-cccEEEEEeCCHHHHHHHHHHhcCc
Q 002874 178 NGVGTVA-GE-HPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK-HRGFVMISYYDIRAARTAMRALQNK 254 (872)
Q Consensus 178 n~~~~~~-g~-~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~-srG~AFVeF~~~e~A~~Ai~~Lng~ 254 (872)
....... .+ .........+|||+||++.+|+++|+++|++||+|.+|.+..+ .+++|||+|.+.++|.+|++.|+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~ 157 (481)
T TIGR01649 78 QEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGA 157 (481)
T ss_pred cccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCC
Confidence 0000000 00 0111123358999999999999999999999999999985433 3479999999999999999999999
Q ss_pred cccc--ceeeeeecCCCCC-------CC----------C-----------------------------------------
Q 002874 255 PLRR--RKLDIHFSIPKDN-------PS----------E----------------------------------------- 274 (872)
Q Consensus 255 ~l~g--r~L~V~~a~pk~~-------~~----------~----------------------------------------- 274 (872)
.|.+ +.|+|+|+.+..- .. +
T Consensus 158 ~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (481)
T TIGR01649 158 DIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAG 237 (481)
T ss_pred cccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccc
Confidence 9964 4788888754210 00 0
Q ss_pred ---------------------------------ccccccceeeeccCC-ccchhhHhhhhcccCCeEEEEeCCCCccEEE
Q 002874 275 ---------------------------------KDVNQGTLVVFNLDA-SVSNDDLRQIFGAYGEVKEIRETPHKRHHKF 320 (872)
Q Consensus 275 ---------------------------------~~~~~~tLfV~NLp~-~~teedLre~Fs~fG~V~~vri~~~skG~gF 320 (872)
......+|||+||++ .+++++|+++|+.||.|.+|++...++||||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~af 317 (481)
T TIGR01649 238 GDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETAL 317 (481)
T ss_pred cccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEE
Confidence 001235899999998 6999999999999999999998766789999
Q ss_pred EEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc-----------------------------------------ccch
Q 002874 321 IEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG-----------------------------------------ARRN 359 (872)
Q Consensus 321 VeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~-----------------------------------------~r~~ 359 (872)
|+|.+.++|.+|++.|||..|.|++|+|.+++... .+..
T Consensus 318 V~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L 397 (481)
T TIGR01649 318 IEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATL 397 (481)
T ss_pred EEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEE
Confidence 99999999999999999999999999999885321 0122
Q ss_pred hhhcCChhccHHHHHHhhhccCC
Q 002874 360 LMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 360 ~v~ql~~~~~q~~~~~~f~~~Gs 382 (872)
++.+++..+++++++.+|..+|.
T Consensus 398 ~v~NLp~~~tee~L~~lF~~~G~ 420 (481)
T TIGR01649 398 HLSNIPLSVSEEDLKELFAENGV 420 (481)
T ss_pred EEecCCCCCCHHHHHHHHHhcCC
Confidence 56788889999999999999985
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=1.4e-26 Score=257.42 Aligned_cols=164 Identities=23% Similarity=0.413 Sum_probs=145.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002874 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
......++|||+|||+++|+++|+++|++||+|++|++ +++++|||||+|.++++|++|++.|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34557899999999999999999999999999999874 4668899999999999999999999999999999999
Q ss_pred eecCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCC
Q 002874 264 HFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNR 338 (872)
Q Consensus 264 ~~a~pk~~~~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG 338 (872)
.|+.+... .....+|||.|||.++++++|+++|++||+|+.|++ ++++++||||+|.+.++|++||+.||+
T Consensus 182 ~~a~p~~~----~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 182 SYARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eccccccc----ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 99876432 234568999999999999999999999999999865 455689999999999999999999999
Q ss_pred ceeCC--cEEEEEecCCCcc
Q 002874 339 SDING--KRIKLEPSRPGGA 356 (872)
Q Consensus 339 ~~l~G--r~L~V~~s~p~~~ 356 (872)
..+.| ++|+|.+++....
T Consensus 258 ~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CccCCCceeEEEEECCcccc
Confidence 99876 7899999987544
No 11
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.3e-24 Score=224.60 Aligned_cols=163 Identities=20% Similarity=0.421 Sum_probs=147.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002874 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
.-.|||+.|...++-++|++.|.+||+|.+++ .+.++|||+||.|...++|++||..|+|+-|.+|.|+-.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56899999999999999999999999998877 3689999999999999999999999999999999999999976
Q ss_pred CCCCCC------------ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHh
Q 002874 269 KDNPSE------------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL 336 (872)
Q Consensus 269 k~~~~~------------~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~L 336 (872)
|..... .....++|||+|++.-++|++|++.|++||.|.+||+- +.+||+||+|.+.|+|.+||..|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvF-k~qGYaFVrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVF-KDQGYAFVRFETKEAAAHAIVQM 220 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEe-cccceEEEEecchhhHHHHHHHh
Confidence 642211 12346799999999999999999999999999999997 45799999999999999999999
Q ss_pred CCceeCCcEEEEEecCCCccc
Q 002874 337 NRSDINGKRIKLEPSRPGGAR 357 (872)
Q Consensus 337 nG~~l~Gr~L~V~~s~p~~~r 357 (872)
|+.+|.|+.++|.|.+.....
T Consensus 221 Nntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 221 NNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred cCceeCceEEEEeccccCCCC
Confidence 999999999999999876543
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=2.5e-24 Score=251.61 Aligned_cols=163 Identities=19% Similarity=0.384 Sum_probs=142.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
...++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34689999999999999999999999999999984 5679999999999999999999999999999999999875
Q ss_pred CCCCCC-------CCccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHH
Q 002874 267 IPKDNP-------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALR 334 (872)
Q Consensus 267 ~pk~~~-------~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~-----~~skG~gFVeF~~~e~A~kAl~ 334 (872)
...... ........+|||+||++++++++|+++|+.||.|++|++. ++++|||||+|.+.++|.+|++
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 322111 0111234689999999999999999999999999999763 4578999999999999999999
Q ss_pred HhCCceeCCcEEEEEecCCC
Q 002874 335 ALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 335 ~LnG~~l~Gr~L~V~~s~p~ 354 (872)
.|||..|+|+.|+|.++.+.
T Consensus 265 amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HhCCCeeCCeEEEEEecCCC
Confidence 99999999999999988754
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=6e-24 Score=248.07 Aligned_cols=229 Identities=24% Similarity=0.332 Sum_probs=178.4
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cc---c--CCCCcEEEEecChhhHHHhhhhhhcccCCcCCCcccc
Q 002874 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DL---F--DSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHY 174 (872)
Q Consensus 101 iwNlLp~~~dav~s~vadel~l~klfsd~~diee-dl---f--ss~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~ 174 (872)
++||.++..++.+..++.++ +.|.+ .+ + .+.|.++|+|+..+.+..++..++-.... .+.
T Consensus 63 VgnLp~~~tEd~L~~~F~~~---------G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~--~Gr--- 128 (578)
T TIGR01648 63 VGKIPRDLYEDELVPLFEKA---------GPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR--PGR--- 128 (578)
T ss_pred eCCCCCCCCHHHHHHHHHhh---------CCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeec--CCc---
Confidence 99999987666666655544 44444 22 1 24566999999999999999877622211 110
Q ss_pred ccCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEe------CCCcccEEEEEeCCHHHHHHH
Q 002874 175 PISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLYT------ACKHRGFVMISYYDIRAARTA 247 (872)
Q Consensus 175 ~l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~-I~~v~~------~~~srG~AFVeF~~~e~A~~A 247 (872)
.+. + ......++|||+|||.++++++|+++|++++. +..+.+ ..+++|||||+|.+.++|..|
T Consensus 129 ~l~-----V-----~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~A 198 (578)
T TIGR01648 129 LLG-----V-----CISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMA 198 (578)
T ss_pred ccc-----c-----cccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHH
Confidence 000 0 01124689999999999999999999999974 333322 246799999999999999999
Q ss_pred HHHhcC--cccccceeeeeecCCCCCCCCcc-ccccceeeeccCCccchhhHhhhhccc--CCeEEEEeCCCCccEEEEE
Q 002874 248 MRALQN--KPLRRRKLDIHFSIPKDNPSEKD-VNQGTLVVFNLDASVSNDDLRQIFGAY--GEVKEIRETPHKRHHKFIE 322 (872)
Q Consensus 248 i~~Lng--~~l~gr~L~V~~a~pk~~~~~~~-~~~~tLfV~NLp~~~teedLre~Fs~f--G~V~~vri~~~skG~gFVe 322 (872)
++.|.. ..+.|+.|.|.|+.++....... ...++|||+||+.++++++|+++|++| |+|+.|++. ++||||+
T Consensus 199 irkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVe 275 (578)
T TIGR01648 199 RRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVH 275 (578)
T ss_pred HHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEE
Confidence 998864 35789999999998775443322 234689999999999999999999999 999999764 6799999
Q ss_pred ECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002874 323 FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 323 F~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
|.+.++|++|+++|||.+|+|+.|+|.|++|...
T Consensus 276 F~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 276 FEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred eCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 9999999999999999999999999999988653
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.4e-23 Score=226.32 Aligned_cols=164 Identities=23% Similarity=0.431 Sum_probs=143.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCccc-c--cceeee
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPL-R--RRKLDI 263 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l-~--gr~L~V 263 (872)
.+.-+|||+-||..++|.||+++|++||.|.+|. .++.++|||||.|++.++|.+|+.+|++.+. - ..+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4456899999999999999999999999999886 4678999999999999999999999988764 3 468899
Q ss_pred eecCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCc
Q 002874 264 HFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRS 339 (872)
Q Consensus 264 ~~a~pk~~~~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri----~~~skG~gFVeF~~~e~A~kAl~~LnG~ 339 (872)
+|+..+.+. -....+|||+-|+..+||.|++++|++||.|++|++ .+.+||+|||.|.+.|.|..||++|||.
T Consensus 112 k~Ad~E~er---~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 112 KYADGERER---IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred cccchhhhc---cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 988654332 234678999999999999999999999999999976 4578999999999999999999999997
Q ss_pred -eeCC--cEEEEEecCCCcccc
Q 002874 340 -DING--KRIKLEPSRPGGARR 358 (872)
Q Consensus 340 -~l~G--r~L~V~~s~p~~~r~ 358 (872)
.+.| .+|.|+|+.+++.|.
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred eeeccCCCceEEEecccCCCch
Confidence 6777 589999999876654
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3.4e-24 Score=233.92 Aligned_cols=164 Identities=23% Similarity=0.445 Sum_probs=144.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEE------eCCCcccEEEEEeCCHHHHHHHHHHhcC--cccccceee
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLY------TACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLD 262 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~-I~~v~------~~~~srG~AFVeF~~~e~A~~Ai~~Lng--~~l~gr~L~ 262 (872)
..+++|||+|||.+.+++||.+.|++.++ |.+|. ...++||||||+|++...|..|.++|-. .++.|..+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 45799999999999999999999999986 55654 2567999999999999999999998854 456799999
Q ss_pred eeecCCCCCCCCcccc-ccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCcee
Q 002874 263 IHFSIPKDNPSEKDVN-QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI 341 (872)
Q Consensus 263 V~~a~pk~~~~~~~~~-~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l 341 (872)
|.|+.|+..+.+.... -+.|||+||+.++|+|.|+++|++||.|..|+.. +.||||.|.+.++|.+|++.|||++|
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cceeEEeecchHHHHHHHHHhcCcee
Confidence 9999998877655332 3579999999999999999999999999999754 66999999999999999999999999
Q ss_pred CCcEEEEEecCCCcccc
Q 002874 342 NGKRIKLEPSRPGGARR 358 (872)
Q Consensus 342 ~Gr~L~V~~s~p~~~r~ 358 (872)
+|..|.|.+++|...++
T Consensus 319 dG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 319 DGSPIEVTLAKPVDKKK 335 (506)
T ss_pred cCceEEEEecCChhhhc
Confidence 99999999999976654
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=4e-23 Score=241.21 Aligned_cols=219 Identities=20% Similarity=0.257 Sum_probs=173.6
Q ss_pred ChhhHHHhhhhhhcccCCcCCCccccccCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--
Q 002874 149 PHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-- 226 (872)
Q Consensus 149 ~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-- 226 (872)
..|++.+++...+-......++...+..+... .........++|||+|||.+++|++|+++|++||.|.+|++
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~-----~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~ 92 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPG-----WSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMM 92 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCc-----ccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEE
Confidence 45667777776664445555555444433210 11111234689999999999999999999999999999874
Q ss_pred --CCCcccEEEEEeCCHHHHHHHHHHhcCcccc-cceeeeeecCCCCCCCCccccccceeeeccCCccchhhHhhhhccc
Q 002874 227 --ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAY 303 (872)
Q Consensus 227 --~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~-gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~~teedLre~Fs~f 303 (872)
+++++|||||+|.+.++|++||+.|++..+. ++.|.|.++. ..++|||+|||.++++++|.++|+++
T Consensus 93 D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~----------~~~rLFVgNLP~~~TeeeL~eeFskv 162 (578)
T TIGR01648 93 DFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV----------DNCRLFVGGIPKNKKREEILEEFSKV 162 (578)
T ss_pred CCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc----------cCceeEeecCCcchhhHHHHHHhhcc
Confidence 4689999999999999999999999999986 7777776653 35789999999999999999999998
Q ss_pred CC-eEEEEe------CCCCccEEEEEECCHHHHHHHHHHhCC--ceeCCcEEEEEecCCCcc---------cchhhhcCC
Q 002874 304 GE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALRALNR--SDINGKRIKLEPSRPGGA---------RRNLMQQLN 365 (872)
Q Consensus 304 G~-V~~vri------~~~skG~gFVeF~~~e~A~kAl~~LnG--~~l~Gr~L~V~~s~p~~~---------r~~~v~ql~ 365 (872)
+. ++++.+ ..+++|||||+|.+.++|.+|++.|+. ..+.|+.|.|+|+.++.. +..++.+|+
T Consensus 163 ~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~ 242 (578)
T TIGR01648 163 TEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLM 242 (578)
T ss_pred cCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCC
Confidence 63 444332 235689999999999999999998864 368999999999987542 335889999
Q ss_pred hhccHHHHHHhhhcc--CC
Q 002874 366 QELEQDEARGFRHQV--GS 382 (872)
Q Consensus 366 ~~~~q~~~~~~f~~~--Gs 382 (872)
.++++++++.+|.+| |.
T Consensus 243 ~~~tee~L~~~F~~f~~G~ 261 (578)
T TIGR01648 243 TTTTEEIIEKSFSEFKPGK 261 (578)
T ss_pred CCCCHHHHHHHHHhcCCCc
Confidence 999999999999999 64
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.7e-23 Score=214.81 Aligned_cols=235 Identities=19% Similarity=0.313 Sum_probs=185.5
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccCC------CCcEEEEecChhhHHHhhhhhhcccCCcCCCccc
Q 002874 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDS------GGGMELEFEPHESLSIGVSKLNISDGIAGTGIAH 173 (872)
Q Consensus 101 iwNlLp~~~dav~s~vadel~l~klfsd~~diee-dlfss------~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~ 173 (872)
|-|.||.+ +++.+++.||.+++|||. ++... -|..+|.+-..+.+.+++..++ ++
T Consensus 45 IvNYLPQ~--------MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlN--------GL-- 106 (360)
T KOG0145|consen 45 IVNYLPQN--------MTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLN--------GL-- 106 (360)
T ss_pred eeeecccc--------cCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhc--------ce--
Confidence 99999974 566677889999999999 55432 2335677777777777766555 22
Q ss_pred cccCCCCCcccCCCCCC-CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHH
Q 002874 174 YPISNGVGTVAGEHPYG-EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTA 247 (872)
Q Consensus 174 ~~l~n~~~~~~g~~~~~-e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~A 247 (872)
++.+...++...+|.. ......|||.+||..+|..||+.+|++||.|..-+ +++.+||.+||.|...++|+.|
T Consensus 107 -rLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~A 185 (360)
T KOG0145|consen 107 -RLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEA 185 (360)
T ss_pred -eeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHH
Confidence 3344433444555443 35678999999999999999999999999986544 5788999999999999999999
Q ss_pred HHHhcCccccc--ceeeeeecCCCCCCC-------------C--------------------------------------
Q 002874 248 MRALQNKPLRR--RKLDIHFSIPKDNPS-------------E-------------------------------------- 274 (872)
Q Consensus 248 i~~Lng~~l~g--r~L~V~~a~pk~~~~-------------~-------------------------------------- 274 (872)
|+.|+|.+-.| .+|.|+|+....... .
T Consensus 186 Ik~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~ 265 (360)
T KOG0145|consen 186 IKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSG 265 (360)
T ss_pred HHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccce
Confidence 99999998765 588998874321100 0
Q ss_pred --------ccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCcee
Q 002874 275 --------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDI 341 (872)
Q Consensus 275 --------~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l 341 (872)
......+|||.||.++++|.-|+++|.+||.|..|++ +.+.+|||||...+.++|..||..|||+.+
T Consensus 266 l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~l 345 (360)
T KOG0145|consen 266 LAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 345 (360)
T ss_pred eeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccc
Confidence 0011248999999999999999999999999999876 356799999999999999999999999999
Q ss_pred CCcEEEEEecCCC
Q 002874 342 NGKRIKLEPSRPG 354 (872)
Q Consensus 342 ~Gr~L~V~~s~p~ 354 (872)
++|.|+|.|...+
T Consensus 346 g~rvLQVsFKtnk 358 (360)
T KOG0145|consen 346 GDRVLQVSFKTNK 358 (360)
T ss_pred cceEEEEEEecCC
Confidence 9999999997543
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=6.7e-23 Score=236.39 Aligned_cols=163 Identities=25% Similarity=0.445 Sum_probs=143.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002874 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
.+++.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+. |+|..+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 3567899999999999999999999999999999884 46789999999999999999997 99999999999998
Q ss_pred ecCCCCCCCC--------ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHH
Q 002874 265 FSIPKDNPSE--------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEA 331 (872)
Q Consensus 265 ~a~pk~~~~~--------~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~-----~~skG~gFVeF~~~e~A~k 331 (872)
++........ ......+|||+||+..+++++|+++|++||.|..|.+. ++++|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8654322110 11235789999999999999999999999999999763 4678999999999999999
Q ss_pred HHHHhCCceeCCcEEEEEecCC
Q 002874 332 ALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 332 Al~~LnG~~l~Gr~L~V~~s~p 353 (872)
|++.|||..|.|++|+|.|+..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999873
No 19
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.8e-22 Score=220.64 Aligned_cols=181 Identities=22% Similarity=0.350 Sum_probs=160.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccc-cceeeeee
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHF 265 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~-gr~L~V~~ 265 (872)
...+.|||+.||.++.|+||.-+|++.|+|-+++ .++.+||||||.|.+.++|++|++.||+..|+ |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4568999999999999999999999999999998 35789999999999999999999999999996 89999987
Q ss_pred cCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCC-eEEEEe------CCCCccEEEEEECCHHHHHHHHHHh-C
Q 002874 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALRAL-N 337 (872)
Q Consensus 266 a~pk~~~~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~-V~~vri------~~~skG~gFVeF~~~e~A~kAl~~L-n 337 (872)
+. ..++|||+|||...++++|.+.|++.++ |.+|.+ ..+.||||||+|+++..|..|.++| +
T Consensus 161 Sv----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 161 SV----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred ee----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 63 4678999999999999999999999864 666643 3467999999999999999999888 4
Q ss_pred Cc-eeCCcEEEEEecCCCcc---------cchhhhcCChhccHHHHHHhhhccCC
Q 002874 338 RS-DINGKRIKLEPSRPGGA---------RRNLMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 338 G~-~l~Gr~L~V~~s~p~~~---------r~~~v~ql~~~~~q~~~~~~f~~~Gs 382 (872)
|+ .+.|+.+.|.|+.|... +..|++||...++++.+...|.++|.
T Consensus 231 g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ 285 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGK 285 (506)
T ss_pred CceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccc
Confidence 43 78999999999998643 33489999999999999999999985
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=3.7e-23 Score=212.34 Aligned_cols=160 Identities=24% Similarity=0.424 Sum_probs=144.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002874 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
+...+.|.|.-||.++|++||+.+|...|+|++|+ +++.+-||+||.|.++++|++|+..|+|.++..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45678899999999999999999999999999998 5788999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEE-----eCCCCccEEEEEECCHHHHHHHHHHhCCce
Q 002874 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSD 340 (872)
Q Consensus 266 a~pk~~~~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vr-----i~~~skG~gFVeF~~~e~A~kAl~~LnG~~ 340 (872)
+.|... .+....|||.+||..+|..||.++|++||.|..-| +++.++|.|||+|+...+|+.||+.|||..
T Consensus 118 ARPSs~----~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSSD----SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCChh----hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 987543 34567899999999999999999999999987654 367889999999999999999999999998
Q ss_pred eCC--cEEEEEecCCC
Q 002874 341 ING--KRIKLEPSRPG 354 (872)
Q Consensus 341 l~G--r~L~V~~s~p~ 354 (872)
-.| .+|.|+|+...
T Consensus 194 P~g~tepItVKFannP 209 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNP 209 (360)
T ss_pred CCCCCCCeEEEecCCc
Confidence 776 58999998643
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.89 E-value=5.2e-22 Score=231.90 Aligned_cols=250 Identities=17% Similarity=0.248 Sum_probs=176.6
Q ss_pred ccCCCCcchhHHHhhccccc----ccccCCCccccccc-cccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCcccc-
Q 002874 101 IGSLLPDDENDLLAGLVDDF----DLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHY- 174 (872)
Q Consensus 101 iwNlLp~~~dav~s~vadel----~l~klfsd~~diee-dlfss~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~- 174 (872)
++||.+...++-|..++..+ ++.. ..+...|.. .+-...|.++|+|+..+.+..+++ ++-... .+..+.+.
T Consensus 180 VgnLp~~~t~~~l~~~F~~~~~~~~~~~-~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~-~g~~l~v~r 256 (509)
T TIGR01642 180 VGGIPPEFVEEAVVDFFNDLMIATGYHK-AEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA-LDSIIY-SNVFLKIRR 256 (509)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCCC-CCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc-CCCeEe-eCceeEecC
Confidence 99999987777777666553 2211 111334444 344556779999999999998874 321100 00011000
Q ss_pred ----c-cCCC---CCcc-----cC------CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCc
Q 002874 175 ----P-ISNG---VGTV-----AG------EHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKH 230 (872)
Q Consensus 175 ----~-l~n~---~~~~-----~g------~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~s 230 (872)
. .+.. .... .. .........++|||+|||..+++++|+++|+.||.|..+.+ ++.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~ 336 (509)
T TIGR01642 257 PHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLS 336 (509)
T ss_pred ccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCc
Confidence 0 0000 0000 00 00012245689999999999999999999999999998763 4668
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCCCC------------------------ccccccceeeec
Q 002874 231 RGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSE------------------------KDVNQGTLVVFN 286 (872)
Q Consensus 231 rG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~------------------------~~~~~~tLfV~N 286 (872)
+|||||+|.+.++|..|+..|+|..|.|++|.|+++........ ......+|+|.|
T Consensus 337 ~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N 416 (509)
T TIGR01642 337 KGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTN 416 (509)
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEecc
Confidence 99999999999999999999999999999999999754321100 011346789999
Q ss_pred cCCc----------cchhhHhhhhcccCCeEEEEeCC--------CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEE
Q 002874 287 LDAS----------VSNDDLRQIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKL 348 (872)
Q Consensus 287 Lp~~----------~teedLre~Fs~fG~V~~vri~~--------~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V 348 (872)
+... ...++|+++|++||.|+.|.+.. ...|++||+|.+.++|++|+.+|||..|+|+.|.|
T Consensus 417 ~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~ 496 (509)
T TIGR01642 417 LVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVA 496 (509)
T ss_pred CCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 8642 12368999999999999998742 23689999999999999999999999999999999
Q ss_pred EecCC
Q 002874 349 EPSRP 353 (872)
Q Consensus 349 ~~s~p 353 (872)
.|...
T Consensus 497 ~~~~~ 501 (509)
T TIGR01642 497 AFYGE 501 (509)
T ss_pred EEeCH
Confidence 99754
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=5.5e-22 Score=231.75 Aligned_cols=165 Identities=18% Similarity=0.302 Sum_probs=137.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcc------------CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcc
Q 002874 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQY------------GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP 255 (872)
Q Consensus 188 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~f------------G~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~ 255 (872)
+...+..++|||+|||+++|+++|+++|.+| +.|..+. ..+.+|||||+|.+.++|..||. |+|..
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~-~~~~kg~afVeF~~~e~A~~Al~-l~g~~ 246 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN-INKEKNFAFLEFRTVEEATFAMA-LDSII 246 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE-ECCCCCEEEEEeCCHHHHhhhhc-CCCeE
Confidence 3456678999999999999999999999975 3455554 45789999999999999999995 99999
Q ss_pred cccceeeeeecCCCCC------------C-------------CCccccccceeeeccCCccchhhHhhhhcccCCeEEEE
Q 002874 256 LRRRKLDIHFSIPKDN------------P-------------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR 310 (872)
Q Consensus 256 l~gr~L~V~~a~pk~~------------~-------------~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vr 310 (872)
|.|++|.|........ + ........+|||+|||..+++++|+++|+.||.|..+.
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 9999999975321110 0 00011246899999999999999999999999999886
Q ss_pred e-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002874 311 E-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 311 i-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
+ ++.++|||||+|.+.++|.+|++.|||..|.|++|.|.++..+
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 5 4567999999999999999999999999999999999998643
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.88 E-value=3.1e-21 Score=222.64 Aligned_cols=243 Identities=23% Similarity=0.293 Sum_probs=174.5
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccC------CCCcEEEEecChhhHHHhhhhhhcccCCcCCCccc
Q 002874 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFD------SGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAH 173 (872)
Q Consensus 101 iwNlLp~~~dav~s~vadel~l~klfsd~~diee-dlfs------s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~ 173 (872)
++||.+...++-+.. +|+.++.|.+ .+.. +.|.++|+|...+.+..++...... ..+..+.+
T Consensus 94 V~nlp~~~~~~~l~~---------~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~--~~g~~i~v 162 (457)
T TIGR01622 94 VLQLALKARERDLYE---------FFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQM--LLGRPIIV 162 (457)
T ss_pred EeCCCCCCCHHHHHH---------HHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCE--ECCeeeEE
Confidence 899988765555555 5555566666 3322 3566899999999999987532211 01111111
Q ss_pred cccCCC---CCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHH
Q 002874 174 YPISNG---VGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAAR 245 (872)
Q Consensus 174 ~~l~n~---~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~ 245 (872)
...... ...............++|||+|||..+++++|+++|++||.|..|.+ +++++|||||+|.+.++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 000000 00000000111123689999999999999999999999999999874 2477899999999999999
Q ss_pred HHHHHhcCcccccceeeeeecCCCCCC-----------------------------------C-----------------
Q 002874 246 TAMRALQNKPLRRRKLDIHFSIPKDNP-----------------------------------S----------------- 273 (872)
Q Consensus 246 ~Ai~~Lng~~l~gr~L~V~~a~pk~~~-----------------------------------~----------------- 273 (872)
+|+..|+|..|.|++|.|.|+...... .
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALM 322 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhh
Confidence 999999999999999999995311000 0
Q ss_pred -------------C---------------------ccccccceeeeccCCccc----------hhhHhhhhcccCCeEEE
Q 002874 274 -------------E---------------------KDVNQGTLVVFNLDASVS----------NDDLRQIFGAYGEVKEI 309 (872)
Q Consensus 274 -------------~---------------------~~~~~~tLfV~NLp~~~t----------eedLre~Fs~fG~V~~v 309 (872)
. ......+|+|.||-...+ .+||++.|++||.|+.|
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v 402 (457)
T TIGR01622 323 QKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHI 402 (457)
T ss_pred ccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEE
Confidence 0 001235688888854433 36899999999999999
Q ss_pred EeC-CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002874 310 RET-PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 310 ri~-~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
.+. +...|++||+|.+.++|.+|++.|||..|+|+.|.|.+....
T Consensus 403 ~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 403 YVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred EEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 875 677899999999999999999999999999999999997543
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=3.4e-21 Score=214.31 Aligned_cols=166 Identities=21% Similarity=0.395 Sum_probs=141.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002874 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
.-+|.|+|||+.+.+.+|+.+|+.||.|..|.+ .++-.|||||+|....+|..|++.+|+..|.||+|-|.|+.++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 468999999999999999999999999999984 3445699999999999999999999999999999999998654
Q ss_pred CCCC-----------------------------------------Cc--c---------------------c--------
Q 002874 270 DNPS-----------------------------------------EK--D---------------------V-------- 277 (872)
Q Consensus 270 ~~~~-----------------------------------------~~--~---------------------~-------- 277 (872)
+... ++ + .
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 2100 00 0 0
Q ss_pred --------------cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHh--
Q 002874 278 --------------NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRAL-- 336 (872)
Q Consensus 278 --------------~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~L-- 336 (872)
...||||+|||+++|+++|.++|++||.|.++.+ +++++|.|||.|.+..+|++||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 0148999999999999999999999999999864 6788999999999999999999977
Q ss_pred ---CC-ceeCCcEEEEEecCCCcccch
Q 002874 337 ---NR-SDINGKRIKLEPSRPGGARRN 359 (872)
Q Consensus 337 ---nG-~~l~Gr~L~V~~s~p~~~r~~ 359 (872)
.| ..|+||.|.|..+-++.....
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~RkeA~d 383 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKEAAD 383 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHHHHH
Confidence 34 678999999999988765543
No 25
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=3e-21 Score=201.57 Aligned_cols=149 Identities=29% Similarity=0.443 Sum_probs=138.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCCCC
Q 002874 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSE 274 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~ 274 (872)
-+|||+|||..+++.+|+.+|++||+|.+|.+ -|.|+||+.++...|+.||+.|++.+|.|..|.|+-++.|..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk--- 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK--- 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccCC---
Confidence 36999999999999999999999999999985 377999999999999999999999999999999998876533
Q ss_pred ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002874 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 275 ~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
..++|+|+||.+.++.+||+..|++||.|.+|++. ++|+||.|+-.++|..|++.|++.+++|++++|+.+..+
T Consensus 77 ---~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 77 ---ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred ---CccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 46789999999999999999999999999999985 789999999999999999999999999999999998765
Q ss_pred c
Q 002874 355 G 355 (872)
Q Consensus 355 ~ 355 (872)
-
T Consensus 151 l 151 (346)
T KOG0109|consen 151 L 151 (346)
T ss_pred c
Confidence 3
No 26
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.84 E-value=1.1e-20 Score=186.47 Aligned_cols=163 Identities=23% Similarity=0.313 Sum_probs=143.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
....||||+||+..++++-|.++|-+.|+|..++ ++..++|||||+|.++++|+-|++-|+..++.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4568999999999999999999999999999997 45679999999999999999999999999999999999987
Q ss_pred CCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEE------EeCCCCccEEEEEECCHHHHHHHHHHhCCce
Q 002874 267 IPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI------RETPHKRHHKFIEFYDVRAAEAALRALNRSD 340 (872)
Q Consensus 267 ~pk~~~~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~v------ri~~~skG~gFVeF~~~e~A~kAl~~LnG~~ 340 (872)
... .........|||+||++.+++..|.++|+.||.+... ..++.+++||||.|.+.|.+.+|+..|||..
T Consensus 87 s~~---~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 87 SAH---QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred ccc---cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 511 1222234789999999999999999999999987663 2356889999999999999999999999999
Q ss_pred eCCcEEEEEecCCCccc
Q 002874 341 INGKRIKLEPSRPGGAR 357 (872)
Q Consensus 341 l~Gr~L~V~~s~p~~~r 357 (872)
+..+++.|.++..+..+
T Consensus 164 l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTK 180 (203)
T ss_pred hcCCceEEEEEEecCCC
Confidence 99999999999876544
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=5.7e-20 Score=205.97 Aligned_cols=250 Identities=17% Similarity=0.321 Sum_probs=194.1
Q ss_pred CCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCCCCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhc
Q 002874 138 DSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQ 217 (872)
Q Consensus 138 ss~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~ 217 (872)
.+.|..+|.|...+.+.+|+..+++...... .+ ++ ....+..+.|||+||+++++.++|.++|+.
T Consensus 35 tslgy~yvnf~~~~da~~A~~~~n~~~~~~~-~~---ri-----------m~s~rd~~~~~i~nl~~~~~~~~~~d~f~~ 99 (369)
T KOG0123|consen 35 TSLGYAYVNFQQPADAERALDTMNFDVLKGK-PI---RI-----------MWSQRDPSLVFIKNLDESIDNKSLYDTFSE 99 (369)
T ss_pred CccceEEEecCCHHHHHHHHHHcCCcccCCc-EE---Ee-----------ehhccCCceeeecCCCcccCcHHHHHHHHh
Confidence 3667789999999999999999885543111 11 00 011223334999999999999999999999
Q ss_pred cCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCCCCc----cccccceeeeccCCc
Q 002874 218 YGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEK----DVNQGTLVVFNLDAS 290 (872)
Q Consensus 218 fG~I~~v~~---~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~----~~~~~tLfV~NLp~~ 290 (872)
||+|.+|++ ..-++|| ||+|.++++|++|++.+||..+.+++|+|.....+...... ...-+.++|.|++.+
T Consensus 100 ~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~ 178 (369)
T KOG0123|consen 100 FGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEED 178 (369)
T ss_pred hcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccc
Confidence 999999994 2338899 99999999999999999999999999999887665443222 123467999999999
Q ss_pred cchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcccch-------
Q 002874 291 VSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARRN------- 359 (872)
Q Consensus 291 ~teedLre~Fs~fG~V~~vri----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r~~------- 359 (872)
++++.|.+.|..||.|..+.+ .+++++|+||+|++.++|..|++.|++..+.++.+.|..+..+..+..
T Consensus 179 ~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~ 258 (369)
T KOG0123|consen 179 STDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFE 258 (369)
T ss_pred cchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhH
Confidence 999999999999999999865 345789999999999999999999999999999999998887544332
Q ss_pred ---------------hhhcCChhccHHHHHHhhhccCCCCCCCCCCCccccCCCcccCCCC-CCCCCCCCCCCCC
Q 002874 360 ---------------LMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLH-AFSKSPGLGTLSP 418 (872)
Q Consensus 360 ---------------~v~ql~~~~~q~~~~~~f~~~Gsp~~~spp~~~s~~gsp~~~~~m~-~~s~s~gfg~v~p 418 (872)
+++++...++.+.++..|..+| .++....|. ..+++.|+|+|.-
T Consensus 259 ~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~G---------------eI~s~kv~~~~~g~skG~gfV~f 318 (369)
T KOG0123|consen 259 QEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFG---------------EITSAKVMVDENGKSKGFGFVEF 318 (369)
T ss_pred hhhhhccccccccccccccCccccchhHHHHHHhccc---------------ceeeEEEEeccCCCccceEEEEc
Confidence 3344455555666666655555 344444444 3688899999853
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1e-19 Score=203.90 Aligned_cols=294 Identities=21% Similarity=0.271 Sum_probs=220.4
Q ss_pred CcccccccccCCchhhHHHHhcCCcccccccCcccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCcccccc-ccC
Q 002874 25 PKKVGSGAWGISFGTEANNASNDASLFSSSLPVLPHEKLNFADSEHHDQSVDDSSPTLNKIDLENESNGPLAGVET-IGS 103 (872)
Q Consensus 25 ~~~~~~~tf~~p~~A~~a~~~~d~s~Fqgrl~hil~~k~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~k~~ee~e~-iwN 103 (872)
.-+-||+.|..|++|.+|+.+++-+.+.|+.+-|...-... ++ . |-|
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~---------------~~-----------------~~i~n 83 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP---------------SL-----------------VFIKN 83 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC---------------ce-----------------eeecC
Confidence 56789999999999999999999999999988887733111 00 4 667
Q ss_pred CCCcchhHHHhhcccccccccCCCccccccccccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCCCCcc
Q 002874 104 LLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTV 183 (872)
Q Consensus 104 lLp~~~dav~s~vadel~l~klfsd~~dieedlfss~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~~~~~ 183 (872)
+.++.++..+......+|-.- +|.-..+ --.++|. +|.|+..+++..++..++-. ..++...+...-. ...
T Consensus 84 l~~~~~~~~~~d~f~~~g~il---S~kv~~~-~~g~kg~-FV~f~~e~~a~~ai~~~ng~---ll~~kki~vg~~~-~~~ 154 (369)
T KOG0123|consen 84 LDESIDNKSLYDTFSEFGNIL---SCKVATD-ENGSKGY-FVQFESEESAKKAIEKLNGM---LLNGKKIYVGLFE-RKE 154 (369)
T ss_pred CCcccCcHHHHHHHHhhcCee---EEEEEEc-CCCceee-EEEeCCHHHHHHHHHHhcCc---ccCCCeeEEeecc-chh
Confidence 777766666666444333221 2222222 1225667 99999999999999987722 1122111111100 000
Q ss_pred cCCCCC--CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccc
Q 002874 184 AGEHPY--GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 257 (872)
Q Consensus 184 ~g~~~~--~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~ 257 (872)
....+. ....-+.+||+|++.++++++|.++|..||.|.++.+ .+++++|+||.|.+.++|..|+..|++..+.
T Consensus 155 er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 155 EREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFG 234 (369)
T ss_pred hhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCC
Confidence 011111 2234578999999999999999999999999999873 4568999999999999999999999999999
Q ss_pred cceeeeeecCCCCCC--------------CCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEE
Q 002874 258 RRKLDIHFSIPKDNP--------------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHK 319 (872)
Q Consensus 258 gr~L~V~~a~pk~~~--------------~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri----~~~skG~g 319 (872)
+..+.|..+..+... .........|||+||+..++.+.|+++|+.||+|..+++ .+.++||+
T Consensus 235 ~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~g 314 (369)
T KOG0123|consen 235 DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFG 314 (369)
T ss_pred ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceE
Confidence 999999887653211 011234568999999999999999999999999999875 46789999
Q ss_pred EEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcccch
Q 002874 320 FIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARRN 359 (872)
Q Consensus 320 FVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r~~ 359 (872)
||+|.+.++|.+|+..+|+..+.++.|.|.+++....++.
T Consensus 315 fV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~ 354 (369)
T KOG0123|consen 315 FVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRA 354 (369)
T ss_pred EEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchh
Confidence 9999999999999999999999999999999986655543
No 29
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.5e-19 Score=201.30 Aligned_cols=162 Identities=22% Similarity=0.366 Sum_probs=143.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002874 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
.||||++||+.++.++|.++|+.+|+|..+.+ ...+|||+||.|.-.+++++|++.+.+..|.|+.|.|..+.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999873 3468999999999999999999999999999999999998665
Q ss_pred CCCCC--------------------c--cccccceeeeccCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEE
Q 002874 270 DNPSE--------------------K--DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEF 323 (872)
Q Consensus 270 ~~~~~--------------------~--~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~----~~skG~gFVeF 323 (872)
..... . +.....|.|+|||+.+.+.+|+.+|+.||.|.+|.|. ++-.|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 43220 1 1125689999999999999999999999999999874 34469999999
Q ss_pred CCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002874 324 YDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 324 ~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
....+|.+|++.+||..|+||+|-|.||-++..
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 999999999999999999999999999988753
No 30
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1.3e-18 Score=189.83 Aligned_cols=245 Identities=19% Similarity=0.335 Sum_probs=177.7
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCC
Q 002874 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNG 179 (872)
Q Consensus 101 iwNlLp~~~dav~s~vadel~l~klfsd~~diee-dlfss~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~ 179 (872)
.+-..-...+.-+..++++++..- +|--+.| .--.+.|.|+|.+.+.+++.+++..++-.+.. .|...
T Consensus 39 VgqIprt~sE~dlr~lFe~yg~V~---einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktl--pG~~~------ 107 (510)
T KOG0144|consen 39 VGQIPRTASEKDLRELFEKYGNVY---EINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTL--PGMHH------ 107 (510)
T ss_pred eccCCccccHHHHHHHHHHhCcee---EEEeecccccCcccceEEEEeccHHHHHHHHHHhhccccc--CCCCc------
Confidence 444444444444444455554433 2333333 11235677999999999988888877622221 11110
Q ss_pred CCcccCCCCCCC--CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcC
Q 002874 180 VGTVAGEHPYGE--HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQN 253 (872)
Q Consensus 180 ~~~~~g~~~~~e--~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~~srG~AFVeF~~~e~A~~Ai~~Lng 253 (872)
+..+...+...+ ...++|||+-|++.++|.|++++|++||.|++|++ .+.+||||||.|.+.+.|..||++|+|
T Consensus 108 pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 108 PVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred ceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcc
Confidence 111111111122 34789999999999999999999999999999984 567999999999999999999999999
Q ss_pred cc-ccc--ceeeeeecCCCCCCC---------------------------------------------------------
Q 002874 254 KP-LRR--RKLDIHFSIPKDNPS--------------------------------------------------------- 273 (872)
Q Consensus 254 ~~-l~g--r~L~V~~a~pk~~~~--------------------------------------------------------- 273 (872)
.. ++| .+|.|+|+.+++...
T Consensus 188 ~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~ 267 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLG 267 (510)
T ss_pred ceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCC
Confidence 64 554 689999975542110
Q ss_pred -----------------------------------------------------C--------------------------
Q 002874 274 -----------------------------------------------------E-------------------------- 274 (872)
Q Consensus 274 -----------------------------------------------------~-------------------------- 274 (872)
.
T Consensus 268 ~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~ 347 (510)
T KOG0144|consen 268 PLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNL 347 (510)
T ss_pred CcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccc
Confidence 0
Q ss_pred ------------------------------------------------------------------------ccccccce
Q 002874 275 ------------------------------------------------------------------------KDVNQGTL 282 (872)
Q Consensus 275 ------------------------------------------------------------------------~~~~~~tL 282 (872)
+......|
T Consensus 348 ~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanl 427 (510)
T KOG0144|consen 348 AGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANL 427 (510)
T ss_pred ccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccce
Confidence 00001379
Q ss_pred eeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcc
Q 002874 283 VVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 283 fV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
||.+||.+.-+.+|-..|..||.|++.++ ++-++.|+||.|++..+|..||..|||..|+.++|+|...+.+..
T Consensus 428 fiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 428 FIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred eeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 99999999999999999999999999854 566899999999999999999999999999999999999876653
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.76 E-value=5.7e-17 Score=190.20 Aligned_cols=157 Identities=16% Similarity=0.257 Sum_probs=111.7
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-ccc------CCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccc
Q 002874 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLF------DSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAH 173 (872)
Q Consensus 101 iwNlLp~~~dav~s~vadel~l~klfsd~~diee-dlf------ss~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~ 173 (872)
++|+.+...++.+.. +|..++.|.+ .+. .+.|.++|+|+..+.+..++..++-... .+..+.+
T Consensus 112 VGnLp~~~tEe~Lr~---------lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i-~GR~IkV 181 (612)
T TIGR01645 112 VGSISFELREDTIRR---------AFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML-GGRNIKV 181 (612)
T ss_pred EcCCCCCCCHHHHHH---------HHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE-ecceeee
Confidence 899998866666665 4555556655 331 2567799999999999999887652211 1111211
Q ss_pred cccCCCCC--cccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHH
Q 002874 174 YPISNGVG--TVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAART 246 (872)
Q Consensus 174 ~~l~n~~~--~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~ 246 (872)
....+... .............++|||+|||+++++++|+++|++||+|.+|++ .++++|||||+|.+.++|.+
T Consensus 182 ~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 182 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 11111000 000011112234579999999999999999999999999999874 35689999999999999999
Q ss_pred HHHHhcCcccccceeeeeecC
Q 002874 247 AMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 247 Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
|+..||+..+.|+.|+|.++.
T Consensus 262 AI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecC
Confidence 999999999999999998754
No 32
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.76 E-value=2.5e-18 Score=197.40 Aligned_cols=161 Identities=26% Similarity=0.464 Sum_probs=139.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC--------CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002874 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 196 tLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~--------~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
+|||+||+++++.++|..+|.+.|.|.++.+. ..+.|||||+|.+.++|++|++.|+|+.|.|+.|.|+++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 49999999999999999999999999998632 1245999999999999999999999999999999999986
Q ss_pred CCCCC--C---CccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCC-----CccEEEEEECCHHHHHHHHHHhC
Q 002874 268 PKDNP--S---EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH-----KRHHKFIEFYDVRAAEAALRALN 337 (872)
Q Consensus 268 pk~~~--~---~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~-----skG~gFVeF~~~e~A~kAl~~Ln 337 (872)
.+... . ......+.|.|+|||+..+..+++++|..||.|++|++..+ .+|||||+|-++++|.+|+++|.
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ 676 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG 676 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc
Confidence 22110 0 11112468999999999999999999999999999998543 48999999999999999999999
Q ss_pred CceeCCcEEEEEecCCCcc
Q 002874 338 RSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 338 G~~l~Gr~L~V~~s~p~~~ 356 (872)
.+.|.||+|.++|+.....
T Consensus 677 STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 677 STHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred ccceechhhheehhccchH
Confidence 9999999999999987654
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=6.3e-18 Score=175.42 Aligned_cols=161 Identities=23% Similarity=0.372 Sum_probs=131.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCC
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 271 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 271 (872)
..-|||||+||+.++||+-|..||.+.|.|..+++. |+ .|+|.|+.....
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i----------~~--------------------e~~v~wa~~p~n 53 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI----------FD--------------------ELKVNWATAPGN 53 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceee----------hh--------------------hhccccccCccc
Confidence 346999999999999999999999999999998742 11 456666654433
Q ss_pred CCCcccc-ccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcE
Q 002874 272 PSEKDVN-QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR 345 (872)
Q Consensus 272 ~~~~~~~-~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~ 345 (872)
.+..... .--+||+.|...++.++||+.|.+||+|.++++ +.++||||||.|.+.++|+.||..|||..|++|.
T Consensus 54 Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 54 QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 3333333 336999999999999999999999999999876 5789999999999999999999999999999999
Q ss_pred EEEEecCCCcccch--------------------hhhcCChhccHHHHHHhhhccCC
Q 002874 346 IKLEPSRPGGARRN--------------------LMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 346 L~V~~s~p~~~r~~--------------------~v~ql~~~~~q~~~~~~f~~~Gs 382 (872)
|+-.|+..+..... |+.+++..++++.+|..|.+||.
T Consensus 134 IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~ 190 (321)
T KOG0148|consen 134 IRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP 190 (321)
T ss_pred eeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc
Confidence 99999987653322 56667677888888888777763
No 34
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=6.5e-18 Score=180.38 Aligned_cols=157 Identities=20% Similarity=0.443 Sum_probs=138.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002874 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
-++|||+.|.+.+.|+.||..|..||+|++|. .+.+++|||||+|+-++.|..|++.|||..+.||.|+|.. |
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr--P 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR--P 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC--C
Confidence 47999999999999999999999999999997 5789999999999999999999999999999999999974 3
Q ss_pred CCCCCC---------ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHH
Q 002874 269 KDNPSE---------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALR 334 (872)
Q Consensus 269 k~~~~~---------~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~-----~~skG~gFVeF~~~e~A~kAl~ 334 (872)
...+.. +.....+|||..+.++++++||+.+|+.||+|++|.+. ...+|||||||.+..+-..|+.
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 222211 11234689999999999999999999999999999762 3568999999999999999999
Q ss_pred HhCCceeCCcEEEEEecC
Q 002874 335 ALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 335 ~LnG~~l~Gr~L~V~~s~ 352 (872)
.||-..|+|.-|+|..+-
T Consensus 271 sMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hcchhhcccceEeccccc
Confidence 999999999999986553
No 35
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.71 E-value=1.6e-16 Score=162.54 Aligned_cols=162 Identities=27% Similarity=0.446 Sum_probs=142.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHH----HhhccCCeEEEE--eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002874 191 EHPSRTLFVRNINSNVEDLELRS----LFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~----lFs~fG~I~~v~--~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
..+..||||.||+..+..++|+. +|++||.|.+|. .+.+.+|-|||.|.+.+.|-.|+++|+|..|.|++++|+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 45667999999999999999998 999999999987 367899999999999999999999999999999999999
Q ss_pred ecCCCCCCCC----------------------------------------------ccccccceeeeccCCccchhhHhh
Q 002874 265 FSIPKDNPSE----------------------------------------------KDVNQGTLVVFNLDASVSNDDLRQ 298 (872)
Q Consensus 265 ~a~pk~~~~~----------------------------------------------~~~~~~tLfV~NLp~~~teedLre 298 (872)
|+..+.+... ......+||+.|||..++.+.|..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 9864421100 012345899999999999999999
Q ss_pred hhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeC-CcEEEEEecC
Q 002874 299 IFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDIN-GKRIKLEPSR 352 (872)
Q Consensus 299 ~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~-Gr~L~V~~s~ 352 (872)
+|..|...++|+......+.|||+|.+...|..|...++|..|- .+.++|.+++
T Consensus 166 lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999988878899999999999999999999999887 8889888875
No 36
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=5.3e-17 Score=167.89 Aligned_cols=166 Identities=23% Similarity=0.424 Sum_probs=139.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCccc-cc--ceeeeee
Q 002874 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPL-RR--RKLDIHF 265 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l-~g--r~L~V~~ 265 (872)
.+|+|||+-|...-.|||++.+|..||.|.+|.+ .+.+||||||.|.+..+|..||..|+|..- -| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5799999999999999999999999999999974 577999999999999999999999998653 22 3455555
Q ss_pred cCCCCCC-------------------------------------------------------------------------
Q 002874 266 SIPKDNP------------------------------------------------------------------------- 272 (872)
Q Consensus 266 a~pk~~~------------------------------------------------------------------------- 272 (872)
+...+++
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 3211000
Q ss_pred --------------------------------------------------------------------------------
Q 002874 273 -------------------------------------------------------------------------------- 272 (872)
Q Consensus 273 -------------------------------------------------------------------------------- 272 (872)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ---------------------CCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCH
Q 002874 273 ---------------------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDV 326 (872)
Q Consensus 273 ---------------------~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~ 326 (872)
..+..+.+.|||..||.+..+.||.+.|-+||.|++.++ +..+|+||||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 001112368999999999999999999999999998854 678899999999999
Q ss_pred HHHHHHHHHhCCceeCCcEEEEEecCCCcccc
Q 002874 327 RAAEAALRALNRSDINGKRIKLEPSRPGGARR 358 (872)
Q Consensus 327 e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r~ 358 (872)
.+|+.||.+|||..|+-|+|+|.+.+|+...|
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999987655
No 37
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1e-15 Score=151.29 Aligned_cols=149 Identities=21% Similarity=0.318 Sum_probs=126.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCC--cccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK--HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~--srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
+.+++|||+|||.++-+.||.++|-+||.|..|.+..+ .-.||||+|+++.+|+.||..-+|..+.|..|+|+++...
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 46799999999999999999999999999999985443 3479999999999999999999999999999999997543
Q ss_pred CCCCC----------------------ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHH
Q 002874 270 DNPSE----------------------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVR 327 (872)
Q Consensus 270 ~~~~~----------------------~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e 327 (872)
..... .....-.|.|.+||++-++++|+++..+-|+|....+. ..|.+.|+|...|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~--rDg~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ--RDGVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee--cccceeeeeeehh
Confidence 21100 11123479999999999999999999999999988875 4569999999999
Q ss_pred HHHHHHHHhCCceeC
Q 002874 328 AAEAALRALNRSDIN 342 (872)
Q Consensus 328 ~A~kAl~~LnG~~l~ 342 (872)
+.+-|++.|+...+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999999876553
No 38
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.63 E-value=3.8e-13 Score=147.14 Aligned_cols=159 Identities=23% Similarity=0.367 Sum_probs=131.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEE----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002874 193 PSRTLFVRNINSNVEDLELRSLFE-QYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs-~fG~I~~v~----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
..|.+||.|||+++..++|++||. +.|+|..|. ..++.||||.|+|+++|.+++|++.|+...+.|++|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 356799999999999999999997 679999887 368999999999999999999999999999999999986421
Q ss_pred CC----------------------------------------------C--CCCC-------------------------
Q 002874 268 PK----------------------------------------------D--NPSE------------------------- 274 (872)
Q Consensus 268 pk----------------------------------------------~--~~~~------------------------- 274 (872)
.. + ..+.
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 10 0 0000
Q ss_pred --------ccccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 002874 275 --------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (872)
Q Consensus 275 --------~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~ 342 (872)
......++||.||.+.+....|++.|.-.|.|..|.+ .+.++|++.|+|..+-+|..||..|++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 0001247899999999999999999999999998843 4578899999999999999999999987777
Q ss_pred CcEEEEEec
Q 002874 343 GKRIKLEPS 351 (872)
Q Consensus 343 Gr~L~V~~s 351 (872)
.++..+.+.
T Consensus 283 ~~~~~~Rl~ 291 (608)
T KOG4212|consen 283 DRRMTVRLD 291 (608)
T ss_pred cccceeecc
Confidence 777777664
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.63 E-value=2.2e-16 Score=177.66 Aligned_cols=164 Identities=23% Similarity=0.368 Sum_probs=140.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002874 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
..|+..+|||+--|+..+++.+|.++|+.+|+|++|. ....++|.|||+|.|.+....|+. |.|+.+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 4567889999999999999999999999999999987 356799999999999999999996 9999999999999
Q ss_pred eecCCCCCCCC--------c--cccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHH
Q 002874 264 HFSIPKDNPSE--------K--DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRA 328 (872)
Q Consensus 264 ~~a~pk~~~~~--------~--~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~ 328 (872)
+......+... + ...-..|||+||.+++++++|+.+|++||.|..|.+ ++.++|||||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 87543222100 0 011223999999999999999999999999999854 57789999999999999
Q ss_pred HHHHHHHhCCceeCCcEEEEEecCC
Q 002874 329 AEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 329 A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
|.+|+..|||.+|.|+.|+|..-.-
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeee
Confidence 9999999999999999999876543
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.60 E-value=2e-15 Score=164.74 Aligned_cols=163 Identities=17% Similarity=0.374 Sum_probs=141.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002874 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
..++|||++|+++++++.|++.|.+||+|.+|.+ +++++||+||+|.+.+...+++. ..-..|.|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 6799999999999999999999999999999873 56899999999999999999987 45577899999999988
Q ss_pred CCCCCCCccc--cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCce
Q 002874 268 PKDNPSEKDV--NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSD 340 (872)
Q Consensus 268 pk~~~~~~~~--~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~ 340 (872)
+......... ...+|||++|+.+++++++++.|.+||.|..+.+ +.+.++|+||.|.+++++.+++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8765443322 3568999999999999999999999998877743 35678999999999999999987 56789
Q ss_pred eCCcEEEEEecCCCccc
Q 002874 341 INGKRIKLEPSRPGGAR 357 (872)
Q Consensus 341 l~Gr~L~V~~s~p~~~r 357 (872)
|.|+.+.|..|.|+...
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 99999999999998643
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.52 E-value=7e-14 Score=157.65 Aligned_cols=161 Identities=22% Similarity=0.345 Sum_probs=129.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
.+-+.|||+||-.++++++|+.+|+.||.|..|.+ ++.++||+||+|.+.++|++|+..|||..|-|+.|+|...
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 34445999999999999999999999999998872 6889999999999999999999999999999999998653
Q ss_pred CCCCCCC--------------------------------------------------------------------Ccc--
Q 002874 267 IPKDNPS--------------------------------------------------------------------EKD-- 276 (872)
Q Consensus 267 ~pk~~~~--------------------------------------------------------------------~~~-- 276 (872)
..+-... .+.
T Consensus 356 ~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (549)
T KOG0147|consen 356 TERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADA 435 (549)
T ss_pred eeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccc
Confidence 2110000 000
Q ss_pred -----ccccceeeeccCC--ccc--------hhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCcee
Q 002874 277 -----VNQGTLVVFNLDA--SVS--------NDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI 341 (872)
Q Consensus 277 -----~~~~tLfV~NLp~--~~t--------eedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l 341 (872)
....++.++|+=. ..| .+++.+.+.+||+|..|.+...+-|+.||.|.+.++|..|+++|||.+|
T Consensus 436 ~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF 515 (549)
T KOG0147|consen 436 SPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWF 515 (549)
T ss_pred ccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhh
Confidence 1122445555411 112 3778889999999999999988889999999999999999999999999
Q ss_pred CCcEEEEEecC
Q 002874 342 NGKRIKLEPSR 352 (872)
Q Consensus 342 ~Gr~L~V~~s~ 352 (872)
.|+.|...|-.
T Consensus 516 ~gr~Ita~~~~ 526 (549)
T KOG0147|consen 516 AGRMITAKYLP 526 (549)
T ss_pred ccceeEEEEee
Confidence 99999988854
No 42
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.49 E-value=6.3e-14 Score=156.57 Aligned_cols=106 Identities=22% Similarity=0.359 Sum_probs=95.8
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002874 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
...++|||+|||+++|+++|+++|+.||.|++|++ +++++|||||+|.++++|++|++.|||..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 35679999999999999999999999999999976 3567899999999999999999999999999999999999
Q ss_pred CCCc----ccchhhhcCChhccHHHHHHhhhccCC
Q 002874 352 RPGG----ARRNLMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 352 ~p~~----~r~~~v~ql~~~~~q~~~~~~f~~~Gs 382 (872)
++.. ..+.++.+|+..+++++++++|.+||.
T Consensus 185 ~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~ 219 (346)
T TIGR01659 185 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQ 219 (346)
T ss_pred cccccccccceeEEeCCCCcccHHHHHHHHHhcCC
Confidence 8743 334588999999999999999999984
No 43
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=5.4e-14 Score=145.37 Aligned_cols=148 Identities=26% Similarity=0.433 Sum_probs=128.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCCC-
Q 002874 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPS- 273 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~- 273 (872)
..|||++||+.+.+.+|..+|..||.|..+.+ ..||+||+|.+..+|..|+..|+++.|.+..+.|+|+.......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 46899999999999999999999999999864 46899999999999999999999999999999999987421100
Q ss_pred ---------------CccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC
Q 002874 274 ---------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR 338 (872)
Q Consensus 274 ---------------~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG 338 (872)
........|+|.|+...+.+.+|.++|.++|.+..... ..+++||+|...++|.+|+..|+|
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 01123457899999999999999999999999955544 578999999999999999999999
Q ss_pred ceeCCcEEEE
Q 002874 339 SDINGKRIKL 348 (872)
Q Consensus 339 ~~l~Gr~L~V 348 (872)
..+.|+.|.+
T Consensus 156 ~~~~~~~l~~ 165 (216)
T KOG0106|consen 156 KKLNGRRISV 165 (216)
T ss_pred hhhcCceeee
Confidence 9999999999
No 44
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.45 E-value=5.1e-13 Score=135.87 Aligned_cols=149 Identities=21% Similarity=0.334 Sum_probs=117.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCCC----cccEEEEEeCCHHHHHHHHHHhcCcccc---cceeee
Q 002874 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY--TACK----HRGFVMISYYDIRAARTAMRALQNKPLR---RRKLDI 263 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~--~~~~----srG~AFVeF~~~e~A~~Ai~~Lng~~l~---gr~L~V 263 (872)
.-|||||.+||.++...||+.+|..|--.+.+. .+.+ .+-+|||.|.+..+|..|+.+|||.+|. +..|.|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 469999999999999999999999986544433 2222 2369999999999999999999999985 778888
Q ss_pred eecCCCCCCC---------------------------------------------------Ccc----------------
Q 002874 264 HFSIPKDNPS---------------------------------------------------EKD---------------- 276 (872)
Q Consensus 264 ~~a~pk~~~~---------------------------------------------------~~~---------------- 276 (872)
++++...+.. +.+
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 8763210000 000
Q ss_pred ---------------ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCC-CCccEEEEEECCHHHHHHHHHHhCCce
Q 002874 277 ---------------VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDVRAAEAALRALNRSD 340 (872)
Q Consensus 277 ---------------~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~-~skG~gFVeF~~~e~A~kAl~~LnG~~ 340 (872)
....||||-||...++|++|+++|+.|-....+++.. ..+..+||+|++.+.|..|+..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 0013899999999999999999999998777776643 345689999999999999999999887
Q ss_pred e
Q 002874 341 I 341 (872)
Q Consensus 341 l 341 (872)
|
T Consensus 273 ~ 273 (284)
T KOG1457|consen 273 L 273 (284)
T ss_pred e
Confidence 6
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.41 E-value=6.5e-13 Score=130.96 Aligned_cols=78 Identities=26% Similarity=0.473 Sum_probs=72.0
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
..++|||+||++++++++|+++|++||.|++|++ +++++|||||+|.+.++|++|++.||+..|+|++|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 4568999999999999999999999999999876 45679999999999999999999999999999999999997
Q ss_pred CCc
Q 002874 353 PGG 355 (872)
Q Consensus 353 p~~ 355 (872)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 654
No 46
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.41 E-value=1.5e-12 Score=128.34 Aligned_cols=80 Identities=24% Similarity=0.433 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002874 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
...+++|||+|||+++++++|+++|++||+|.+|.+ +++++|||||+|.+.++|++|++.|++..|.|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 456789999999999999999999999999999874 467899999999999999999999999999999999999
Q ss_pred cCCCC
Q 002874 266 SIPKD 270 (872)
Q Consensus 266 a~pk~ 270 (872)
+.++.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87654
No 47
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.39 E-value=7.8e-12 Score=134.43 Aligned_cols=165 Identities=15% Similarity=0.264 Sum_probs=133.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EE----eCCCcccEEEEEeCCHHHHHHHHHHhcCccccc
Q 002874 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--------LY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRR 258 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~--------v~----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~g 258 (872)
..-++.|||.|||.++|.+|+.++|++||-|.+ |+ ..+.-+|=|.+.|.-.+++..|++.|++..|+|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 345677999999999999999999999998754 22 256788999999999999999999999999999
Q ss_pred ceeeeeecCCC---------C-C--------------------C----CCccccccceeeeccCC----ccc-------h
Q 002874 259 RKLDIHFSIPK---------D-N--------------------P----SEKDVNQGTLVVFNLDA----SVS-------N 293 (872)
Q Consensus 259 r~L~V~~a~pk---------~-~--------------------~----~~~~~~~~tLfV~NLp~----~~t-------e 293 (872)
+.|+|+.|.-. . . + ..+....+||.|+|+=. ..+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 99999876311 0 0 0 00112346899999732 122 5
Q ss_pred hhHhhhhcccCCeEEEEe-CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002874 294 DDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 294 edLre~Fs~fG~V~~vri-~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
++|++-+++||.|..|.+ ..++.|.+-|.|.+.++|..||+.|+|+.++||+|..+...-+.
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 778888999999999976 45778999999999999999999999999999999988776543
No 48
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.32 E-value=1.7e-11 Score=133.87 Aligned_cols=160 Identities=25% Similarity=0.325 Sum_probs=136.5
Q ss_pred CcEEEEcCCC-CCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCC-
Q 002874 194 SRTLFVRNIN-SNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN- 271 (872)
Q Consensus 194 srtLfV~NLP-~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~- 271 (872)
+..|.|.||. ..+|.+.|..+|.-||+|.+|++....+--|.|+|.|...|+.|+..|+|.++.|++|+|.+++-..-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 5889999996 56999999999999999999998777778999999999999999999999999999999998753211
Q ss_pred -----CCC--------------------c-----cccccceeeeccCCccchhhHhhhhcccCCe-EEEEeCCCCccEEE
Q 002874 272 -----PSE--------------------K-----DVNQGTLVVFNLDASVSNDDLRQIFGAYGEV-KEIRETPHKRHHKF 320 (872)
Q Consensus 272 -----~~~--------------------~-----~~~~~tLfV~NLp~~~teedLre~Fs~fG~V-~~vri~~~skG~gF 320 (872)
... + -....+|.+.|+|.+++||+|++.|..-|.. +-.+..++.+.+++
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 000 0 0123589999999999999999999988765 44566777788999
Q ss_pred EEECCHHHHHHHHHHhCCceeCC-cEEEEEecCC
Q 002874 321 IEFYDVRAAEAALRALNRSDING-KRIKLEPSRP 353 (872)
Q Consensus 321 VeF~~~e~A~kAl~~LnG~~l~G-r~L~V~~s~p 353 (872)
+.+.+.|+|..|+-.++.+.+++ +.|+|+|++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999998875 5999999875
No 49
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.32 E-value=1.1e-11 Score=135.34 Aligned_cols=164 Identities=26% Similarity=0.419 Sum_probs=135.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccE-EEEEeCCHHHHHHHHHHhcCccccc--ceeeeeecCC
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIP 268 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~-AFVeF~~~e~A~~Ai~~Lng~~l~g--r~L~V~~a~p 268 (872)
.+--+++|.|+-+-++-+-|..+|++||.|..|....+..|| |.|+|.+.+.|..|..+|+|+.|.. +.|+|.|+.-
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 344578899999999999999999999999999877777887 9999999999999999999998743 5677666421
Q ss_pred ----------CCC-------CCC--------------------------------------c--cc--cccceeeeccCC
Q 002874 269 ----------KDN-------PSE--------------------------------------K--DV--NQGTLVVFNLDA 289 (872)
Q Consensus 269 ----------k~~-------~~~--------------------------------------~--~~--~~~tLfV~NLp~ 289 (872)
+.+ +.. . .. ....|.|.||..
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 100 000 0 00 134678888876
Q ss_pred c-cchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002874 290 S-VSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 290 ~-~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
. +|.+.|..+|..||+|.+|++--+++..|+|+|.|...|+-|+..|+|..|.|++|+|.+++-..
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 4 89999999999999999999876777899999999999999999999999999999999998654
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.7e-11 Score=131.76 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=108.4
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccccc-cCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCC
Q 002874 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDL-FDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNG 179 (872)
Q Consensus 101 iwNlLp~~~dav~s~vadel~l~klfsd~~dieedl-fss~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~ 179 (872)
.|...|.--+|.+...++-+|-.| ++.--=|.+ -.-+|..+|+++-.|.+..+.+.++-.-.+. ..+.+-...|-
T Consensus 118 VGSIsfEl~EDtiR~AF~PFGPIK---SInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG-RNiKVgrPsNm 193 (544)
T KOG0124|consen 118 VGSISFELREDTIRRAFDPFGPIK---SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG-RNIKVGRPSNM 193 (544)
T ss_pred eeeeEEEechHHHHhhccCCCCcc---eeecccccccccccceEEEEEeCcHHHHHHHHHhccccccC-ccccccCCCCC
Confidence 466666544555555566666554 111100111 2234668999999999999999888333222 11211111111
Q ss_pred CCc--ccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhc
Q 002874 180 VGT--VAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQ 252 (872)
Q Consensus 180 ~~~--~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Ln 252 (872)
.-. ....-....+.-.+|||..+.++.+|+||+.+|+.||+|..|.+ ...++||+||+|.+..+-..|+..||
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 000 00000012345679999999999999999999999999999983 56799999999999999999999999
Q ss_pred Ccccccceeeeee
Q 002874 253 NKPLRRRKLDIHF 265 (872)
Q Consensus 253 g~~l~gr~L~V~~ 265 (872)
-..+.|.-|+|..
T Consensus 274 lFDLGGQyLRVGk 286 (544)
T KOG0124|consen 274 LFDLGGQYLRVGK 286 (544)
T ss_pred hhhcccceEeccc
Confidence 9999999998865
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.27 E-value=8.1e-12 Score=105.84 Aligned_cols=66 Identities=35% Similarity=0.609 Sum_probs=61.5
Q ss_pred eeeeccCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEE
Q 002874 282 LVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (872)
Q Consensus 282 LfV~NLp~~~teedLre~Fs~fG~V~~vri~----~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~ 347 (872)
|||+|||.++++++|+++|++||.|..+.+. +..+++|||+|.+.++|++|++.|+|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999998653 45689999999999999999999999999999986
No 52
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.25 E-value=1.6e-11 Score=103.99 Aligned_cols=66 Identities=29% Similarity=0.591 Sum_probs=61.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002874 197 LFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 197 LfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
|||+|||.++++++|+++|++||.|..+.+ .+..+++|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988874 356889999999999999999999999999999875
No 53
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.1e-11 Score=122.37 Aligned_cols=77 Identities=26% Similarity=0.506 Sum_probs=73.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002874 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
-.++|||+||+..+++.||...|..||+|..|++.....|||||+|+++.+|+.|+..|+|+.|.|..|.|+.+.-.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 36899999999999999999999999999999998889999999999999999999999999999999999998543
No 54
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.20 E-value=3.6e-10 Score=124.25 Aligned_cols=70 Identities=23% Similarity=0.311 Sum_probs=64.5
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002874 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 280 ~tLfV~NLp~~~teedLre~Fs~fG~V~~vri--~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
++|+|+|||+++|++.|++-|..||.|.++.+ .++++ +.|.|.++++|++|+..|+|..|+|+.|+|.|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gksk--GVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSK--GVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhccCCcc--ceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 48999999999999999999999999999988 45555 499999999999999999999999999999873
No 55
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=1.8e-11 Score=121.06 Aligned_cols=77 Identities=31% Similarity=0.472 Sum_probs=72.7
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002874 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 279 ~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
.++|||+||+..+++.||..+|..||.|..|.+.....|||||||++..+|+.|+..|+|+.|.|..|+|+++.-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 57899999999999999999999999999999887889999999999999999999999999999999999987543
No 56
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.19 E-value=1.3e-10 Score=121.22 Aligned_cols=119 Identities=26% Similarity=0.442 Sum_probs=101.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002874 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
.++|||+|||.++++++|+++|.+||.|..+.+ ++.++|||||+|.+.++|..|+..+++..|.|++|.|.+..+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 699999999999999999999999999987762 578999999999999999999999999999999999999542
Q ss_pred ----CCCCC----------------CccccccceeeeccCCccchhhHhhhhcccCCeEEEEeC
Q 002874 269 ----KDNPS----------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET 312 (872)
Q Consensus 269 ----k~~~~----------------~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~ 312 (872)
..... ........+++.+++..++..++...|..+|.+..+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 21111 011134589999999999999999999999999777653
No 57
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.18 E-value=4.5e-11 Score=118.85 Aligned_cols=129 Identities=22% Similarity=0.304 Sum_probs=105.1
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
...||||+||+..++++-|.++|-+.|.|..+++ +...+|||||||.++|+|+-|++-||...|.||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 3579999999999999999999999999999965 44578999999999999999999999999999999999887
Q ss_pred CCc-----ccchhhhcCChhccHHHHHHhhhccCCCCCCCCCCCccccCCCcccCCCCCCCCCCCCCCCCC
Q 002874 353 PGG-----ARRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSP 418 (872)
Q Consensus 353 p~~-----~r~~~v~ql~~~~~q~~~~~~f~~~Gsp~~~spp~~~s~~gsp~~~~~m~~~s~s~gfg~v~p 418 (872)
..+ ..+.++++|..++++.-+...|+++|.-.. +|.- ...-.++.+++||++.-
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~--~P~i----------~rd~~tg~~~~~g~i~~ 146 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLIS--PPKI----------MRDPDTGNPKGFGFINY 146 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhcccccc--CCcc----------cccccCCCCCCCeEEec
Confidence 322 123478999999999999999999995432 2221 11234567788888754
No 58
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.16 E-value=2.3e-10 Score=128.13 Aligned_cols=157 Identities=17% Similarity=0.290 Sum_probs=123.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE---eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCC
Q 002874 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~---~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 270 (872)
.-.|-+++||+++|++||.++|+.++ |+.+. .+++..|-|||+|.+.+++++|++ .+...+..+-|.|-.+.+++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcc
Confidence 45788899999999999999999996 55554 457889999999999999999999 78888888888887664443
Q ss_pred CC-------CCccccccceeeeccCCccchhhHhhhhcccCCeEE-E----EeCCCCccEEEEEECCHHHHHHHHHHhCC
Q 002874 271 NP-------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE-I----RETPHKRHHKFIEFYDVRAAEAALRALNR 338 (872)
Q Consensus 271 ~~-------~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~-v----ri~~~skG~gFVeF~~~e~A~kAl~~LnG 338 (872)
.. .........|.+++||+.||++||.++|+..-.|.. | ...+++.|-|||+|++.+.|++|+.. |.
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hr 166 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HR 166 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HH
Confidence 21 111135578999999999999999999998754444 2 11345678999999999999999983 55
Q ss_pred ceeCCcEEEEEecCC
Q 002874 339 SDINGKRIKLEPSRP 353 (872)
Q Consensus 339 ~~l~Gr~L~V~~s~p 353 (872)
..|.-+-|.|-.+..
T Consensus 167 e~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 167 ENIGHRYIEVFRSSR 181 (510)
T ss_pred HhhccceEEeehhHH
Confidence 677777788766643
No 59
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=1.6e-10 Score=132.39 Aligned_cols=165 Identities=16% Similarity=0.313 Sum_probs=129.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002874 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
.......+||++||..+++++++++.+.||+++... .++.++||||.+|.+......|+..|+|+.+.+++|.|+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 445668999999999999999999999999987765 246799999999999999999999999999999999999
Q ss_pred ecCCCCCCCCc--------------------cccccceeeeccCC--cc-c-------hhhHhhhhcccCCeEEEEeCCC
Q 002874 265 FSIPKDNPSEK--------------------DVNQGTLVVFNLDA--SV-S-------NDDLRQIFGAYGEVKEIRETPH 314 (872)
Q Consensus 265 ~a~pk~~~~~~--------------------~~~~~tLfV~NLp~--~~-t-------eedLre~Fs~fG~V~~vri~~~ 314 (872)
.+.+....... ......|.+.|+=. ++ . -|+++..|.+||.|..|.+...
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 87654321100 01122333333211 11 1 2567788899999999976322
Q ss_pred --------CccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002874 315 --------KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 315 --------skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
..|..||||.+.+++++|..+|+|..++|+.|...|..+.
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 3577999999999999999999999999999999987643
No 60
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=6.4e-11 Score=126.63 Aligned_cols=77 Identities=19% Similarity=0.354 Sum_probs=71.5
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeC---CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~---~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
..++|+|.|||+...|-||+.+|.+||.|.+|.|. ..+||||||+|++.+||++|..+|||..+.||+|+|..+.++
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 35789999999999999999999999999999763 467999999999999999999999999999999999998765
No 61
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=1.2e-10 Score=106.09 Aligned_cols=79 Identities=28% Similarity=0.468 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCC
Q 002874 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~--~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
..-++.|||+|||+++|.+++.++|.+||.|+.|++ +...+|.|||.|++..+|++|++.|.|..+.++.|.|.|..+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 345789999999999999999999999999999985 556899999999999999999999999999999999998765
Q ss_pred C
Q 002874 269 K 269 (872)
Q Consensus 269 k 269 (872)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 4
No 62
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=6.3e-11 Score=111.67 Aligned_cols=76 Identities=26% Similarity=0.463 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002874 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
.+.++||||+||...++|+.|.+||+++|+|+.|.+ +...-|||||+|.+.++|+.|++.+++..+..++|.|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 356899999999999999999999999999999962 345679999999999999999999999999999999998
Q ss_pred c
Q 002874 266 S 266 (872)
Q Consensus 266 a 266 (872)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2.3e-10 Score=118.44 Aligned_cols=80 Identities=21% Similarity=0.403 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002874 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...+.++|-|.||+.+++|++|++||.+||.|.+|+ .++.++|||||.|.+.++|.+||..|+|.-+..-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 334678999999999999999999999999999998 478899999999999999999999999999999999999
Q ss_pred ecCCC
Q 002874 265 FSIPK 269 (872)
Q Consensus 265 ~a~pk 269 (872)
|+.|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99875
No 64
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1e-10 Score=110.34 Aligned_cols=76 Identities=21% Similarity=0.374 Sum_probs=69.9
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
.++||||+||.+.++||+|.++|+++|+|+.|.+ +....|||||+|.+.++|..|++.++|..|+.++|+|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 4679999999999999999999999999999843 45678999999999999999999999999999999999875
Q ss_pred C
Q 002874 353 P 353 (872)
Q Consensus 353 p 353 (872)
-
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 4
No 65
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=4.4e-10 Score=102.50 Aligned_cols=100 Identities=20% Similarity=0.367 Sum_probs=82.5
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri--~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
..+.|||+|||+++|.|+..++|.+||.|+.||+ +...+|-|||.|++..+|.+|++.|+|..+.++-|.|-+..+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 4568999999999999999999999999999998 45568999999999999999999999999999999999998876
Q ss_pred ccchhhhcCChhccHHHHHHhhhccC
Q 002874 356 ARRNLMQQLNQELEQDEARGFRHQVG 381 (872)
Q Consensus 356 ~r~~~v~ql~~~~~q~~~~~~f~~~G 381 (872)
..+... ....++++..+-.+||
T Consensus 97 ~~~~~~----~~k~~~~l~~~~~ky~ 118 (124)
T KOG0114|consen 97 AFKLMD----SRKAREELSILKEKYG 118 (124)
T ss_pred HHHHHH----hHHhhhHHHHHHHHhc
Confidence 544322 1223444555555565
No 66
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.10 E-value=2.3e-10 Score=121.59 Aligned_cols=75 Identities=20% Similarity=0.381 Sum_probs=68.4
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEeCC--CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002874 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 279 ~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~--~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
.++|||+||++.+++++|+++|+.||+|++|++.. ..+|||||+|.+.++|+.||. |+|..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 46899999999999999999999999999998743 357999999999999999996 9999999999999998643
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.10 E-value=3.5e-10 Score=120.16 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=68.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC--CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002874 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~--~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
.++|||+|||+.+++++|+++|+.||+|.+|.+. +..+|||||+|.+.++|+.|+. |+|..|.|++|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 5899999999999999999999999999999852 3368999999999999999996 9999999999999997543
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.09 E-value=8.7e-11 Score=123.88 Aligned_cols=99 Identities=25% Similarity=0.398 Sum_probs=92.7
Q ss_pred ceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC--cccc
Q 002874 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG--GARR 358 (872)
Q Consensus 281 tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~--~~r~ 358 (872)
+|||+|||..+++.+|+.+|++||+|.+|+|. |.||||..++...|+.||+.|+|+.|+|..|.|+-++.+ ...+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv---KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stk 80 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV---KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTK 80 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee---cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccc
Confidence 69999999999999999999999999999986 689999999999999999999999999999999999877 5556
Q ss_pred hhhhcCChhccHHHHHHhhhccCC
Q 002874 359 NLMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 359 ~~v~ql~~~~~q~~~~~~f~~~Gs 382 (872)
..+.|+....+.++++..|.+||-
T Consensus 81 l~vgNis~tctn~ElRa~fe~ygp 104 (346)
T KOG0109|consen 81 LHVGNISPTCTNQELRAKFEKYGP 104 (346)
T ss_pred cccCCCCccccCHHHhhhhcccCC
Confidence 688999999999999999999993
No 69
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.3e-10 Score=118.47 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=72.5
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
...+|.|.||+.++++++|+++|.+||.|..|.+ ++.++|||||.|.+.++|++||+.|||+-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4578999999999999999999999999998854 78899999999999999999999999999999999999999
Q ss_pred CC
Q 002874 353 PG 354 (872)
Q Consensus 353 p~ 354 (872)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 70
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=1.4e-10 Score=131.61 Aligned_cols=163 Identities=27% Similarity=0.387 Sum_probs=131.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCC
Q 002874 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 270 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 270 (872)
..+.++|+|-|||..|++++|+.+|+.||+|+.|+.+...+|.+||+|.|.++|++|+++|++..+.|+.|+........
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~ 151 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRA 151 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccccc
Confidence 56789999999999999999999999999999999888899999999999999999999999999999888832211000
Q ss_pred ------------------CCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHH
Q 002874 271 ------------------NPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAA 332 (872)
Q Consensus 271 ------------------~~~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kA 332 (872)
...........+++- |++..+..-++.+|..+|.+.. +.++.....-|++|.+..++..+
T Consensus 152 ~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~~ 229 (549)
T KOG4660|consen 152 MGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAFS 229 (549)
T ss_pred chhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhhc
Confidence 000111123455555 9999999888899999999988 88777777899999999999777
Q ss_pred HHHhCCceeCCcEEEEEecCCCcc
Q 002874 333 LRALNRSDINGKRIKLEPSRPGGA 356 (872)
Q Consensus 333 l~~LnG~~l~Gr~L~V~~s~p~~~ 356 (872)
...+ |..+.+....+.++.+.+.
T Consensus 230 ~~~~-G~~~s~~~~v~t~S~~~g~ 252 (549)
T KOG4660|consen 230 EPRG-GFLISNSSGVITFSGPGGV 252 (549)
T ss_pred ccCC-ceecCCCCceEEecCCCcc
Confidence 7644 7777788877788877443
No 71
>smart00362 RRM_2 RNA recognition motif.
Probab=99.06 E-value=5.5e-10 Score=93.26 Aligned_cols=69 Identities=30% Similarity=0.606 Sum_probs=63.1
Q ss_pred ceeeeccCCccchhhHhhhhcccCCeEEEEeCCC---CccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002874 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH---KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 281 tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~---skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
+|+|+|||..+++++|+++|++||.|..+++... .+++|||+|.+.++|++|++.++|..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999876433 47999999999999999999999999999999874
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.06 E-value=4.5e-10 Score=96.12 Aligned_cols=66 Identities=32% Similarity=0.616 Sum_probs=58.8
Q ss_pred eeeeccCCccchhhHhhhhcccCCeEEEEeCC----CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEE
Q 002874 282 LVVFNLDASVSNDDLRQIFGAYGEVKEIRETP----HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (872)
Q Consensus 282 LfV~NLp~~~teedLre~Fs~fG~V~~vri~~----~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~ 347 (872)
|||+|||+++++++|+++|+.||.|..+++.. ..+++|||+|.+.++|.+|++.++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999997643 3479999999999999999999999999999985
No 73
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=4.2e-10 Score=120.52 Aligned_cols=79 Identities=22% Similarity=0.401 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002874 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
....++|+|.|||+..-|-||+.+|++||+|.+|.+ ..-+|||+||+|++.++|++|..+|+|..+.||+|.|..+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 344689999999999999999999999999999873 45689999999999999999999999999999999999886
Q ss_pred CC
Q 002874 268 PK 269 (872)
Q Consensus 268 pk 269 (872)
+.
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 54
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.04 E-value=5.6e-10 Score=95.52 Aligned_cols=66 Identities=23% Similarity=0.536 Sum_probs=58.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEeC----CCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002874 197 LFVRNINSNVEDLELRSLFEQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 197 LfV~NLP~~vteeeLr~lFs~fG~I~~v~~~----~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
|||+|||+++++++|+++|+.||.|..+.+. +..+|+|||+|.+.++|++|++.+++..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999998742 34689999999999999999999998999999874
No 75
>PLN03213 repressor of silencing 3; Provisional
Probab=99.03 E-value=4.9e-10 Score=124.52 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=87.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-CCCcccEEEEEeCCH--HHHHHHHHHhcCcccccceeeeeecCC
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-ACKHRGFVMISYYDI--RAARTAMRALQNKPLRRRKLDIHFSIP 268 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-~~~srG~AFVeF~~~--e~A~~Ai~~Lng~~l~gr~L~V~~a~p 268 (872)
....+|||+||++.+++++|+.+|..||.|.+|.+ ....||||||+|... .++.+||..|+|..++|+.|+|..+.|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34689999999999999999999999999999984 223489999999987 789999999999999999999998865
Q ss_pred CCC-------CCCccccccceeeeccCCc-cchhhHhhhhcccCCeEEEEeC
Q 002874 269 KDN-------PSEKDVNQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRET 312 (872)
Q Consensus 269 k~~-------~~~~~~~~~tLfV~NLp~~-~teedLre~Fs~fG~V~~vri~ 312 (872)
.-. .........++. |+.. .....|+-+|-+.++|+.+-+.
T Consensus 88 ~YLeRLkrEReea~s~~~~~~k---l~k~~~e~~qLnifFPrLrKvKslPfs 136 (759)
T PLN03213 88 HYLARLKREWEAASSTSDNTIK---APSDSPPATHLNIFFPRLRKVKAMPLS 136 (759)
T ss_pred HHHHHHHHHHHHhhcccccccc---ccccCCccceeeEeccccccccccccC
Confidence 410 000001111211 1211 3345677788888888877553
No 76
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.02 E-value=2.6e-09 Score=115.74 Aligned_cols=173 Identities=21% Similarity=0.313 Sum_probs=135.6
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHh--cCccccccee
Q 002874 184 AGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL--QNKPLRRRKL 261 (872)
Q Consensus 184 ~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~L--ng~~l~gr~L 261 (872)
...++....++-.|.|++|-..++|.+|.+..+.||.|..+.. .+.+.-|.|+|+|.+.|+.++.-- +...+.|+.-
T Consensus 21 ~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 21 DNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred cCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchh
Confidence 3445566778889999999999999999999999999998854 467789999999999999998632 3344667777
Q ss_pred eeeecCCCCCCC--C-cccccccee--eeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHh
Q 002874 262 DIHFSIPKDNPS--E-KDVNQGTLV--VFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL 336 (872)
Q Consensus 262 ~V~~a~pk~~~~--~-~~~~~~tLf--V~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~L 336 (872)
.+.|+..+.-.. . .......|. |-|--+.+|-+-|..++.+.|.|..|-+..+.--.|.|||++.+.|++|..+|
T Consensus 100 l~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~al 179 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAAL 179 (494)
T ss_pred hcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhc
Confidence 777774432211 1 111233333 44555678999999999999999999887666567999999999999999999
Q ss_pred CCceeC-C-cEEEEEecCCCccc
Q 002874 337 NRSDIN-G-KRIKLEPSRPGGAR 357 (872)
Q Consensus 337 nG~~l~-G-r~L~V~~s~p~~~r 357 (872)
||..|. | ++|+|+|++|...+
T Consensus 180 NGADIYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 180 NGADIYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred ccccccccceeEEEEecCcceee
Confidence 999875 4 78999999997644
No 77
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.02 E-value=2.2e-10 Score=115.79 Aligned_cols=75 Identities=35% Similarity=0.547 Sum_probs=69.9
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002874 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 279 ~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
..+|.|-||.+.|+.++|+.+|++||.|-+|.| +..++|||||.|.+..+|+.|+++|+|..|+|+.|.|++++=
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 468999999999999999999999999999965 567899999999999999999999999999999999998863
No 78
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.01 E-value=1.1e-09 Score=90.25 Aligned_cols=56 Identities=36% Similarity=0.612 Sum_probs=51.5
Q ss_pred HhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002874 296 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 296 Lre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
|+++|++||+|+.+.+..+.+++|||+|.+.++|++|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999987665799999999999999999999999999999999986
No 79
>smart00362 RRM_2 RNA recognition motif.
Probab=99.00 E-value=1.5e-09 Score=90.69 Aligned_cols=69 Identities=30% Similarity=0.566 Sum_probs=62.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC---CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002874 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 196 tLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~---~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
+|||+|||..+++++|+++|++||+|..+.+. +..+|+|||+|.+.++|++|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999988743 2357999999999999999999999999999988763
No 80
>PLN03213 repressor of silencing 3; Provisional
Probab=98.99 E-value=7e-10 Score=123.33 Aligned_cols=77 Identities=26% Similarity=0.362 Sum_probs=69.7
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCC-CCccEEEEEECCH--HHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDV--RAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~-~skG~gFVeF~~~--e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
...+|||+||++.+++++|+.+|..||.|.+|.+.. ..||||||+|.+. .++.+||..|||..+.|+.|+|..+++.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 456899999999999999999999999999997632 2389999999987 7899999999999999999999999875
No 81
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1.8e-09 Score=114.57 Aligned_cols=78 Identities=26% Similarity=0.474 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002874 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...+-+||||.-|+++++|.+|+..|++||+|+.|. ++++++|||||+|++..+...|.+..+|.+|.|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 346789999999999999999999999999999887 589999999999999999999999999999999999998
Q ss_pred ecC
Q 002874 265 FSI 267 (872)
Q Consensus 265 ~a~ 267 (872)
+..
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 753
No 82
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=7.5e-10 Score=110.22 Aligned_cols=78 Identities=31% Similarity=0.510 Sum_probs=71.2
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeC--CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~--~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
+.++|||+|||.++.+.+|.++|.+||.|.+|.+. +....||||+|++..+|+.||..-+|+.++|++|+|++++.+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 46789999999999999999999999999999764 3346799999999999999999999999999999999998664
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=1.9e-09 Score=114.37 Aligned_cols=90 Identities=30% Similarity=0.441 Sum_probs=78.5
Q ss_pred CCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEE-----eCCCCccEEEEEECCHHHHHHHHHHhCCcee
Q 002874 267 IPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSDI 341 (872)
Q Consensus 267 ~pk~~~~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vr-----i~~~skG~gFVeF~~~e~A~kAl~~LnG~~l 341 (872)
.|..++....-.-+||||.-|+.+++|.+|+..|+.||.|+.|+ ++++++|||||+|++..+..+|.+..+|..|
T Consensus 89 dP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 89 DPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 44444444445678999999999999999999999999999985 4789999999999999999999999999999
Q ss_pred CCcEEEEEecCCCcc
Q 002874 342 NGKRIKLEPSRPGGA 356 (872)
Q Consensus 342 ~Gr~L~V~~s~p~~~ 356 (872)
+|+.|.|.+-+-...
T Consensus 169 dgrri~VDvERgRTv 183 (335)
T KOG0113|consen 169 DGRRILVDVERGRTV 183 (335)
T ss_pred cCcEEEEEecccccc
Confidence 999999998765543
No 84
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.95 E-value=1.1e-09 Score=110.90 Aligned_cols=79 Identities=27% Similarity=0.466 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002874 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
.+...-.+|.|-||-+.++.++|+.+|++||.|.+|++ +..++|||||.|.+..+|+.|+++|+|..|.|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 33445689999999999999999999999999999984 6789999999999999999999999999999999999
Q ss_pred eecC
Q 002874 264 HFSI 267 (872)
Q Consensus 264 ~~a~ 267 (872)
+++.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 9875
No 85
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=7.6e-10 Score=114.32 Aligned_cols=81 Identities=26% Similarity=0.368 Sum_probs=70.0
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002874 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
+..-++|||++|++.+..|+|++.|++||+|+++.+ ++++||||||+|+|.++|.+|++..| -.|+||+.-|.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccch
Confidence 334578999999999999999999999999999744 67899999999999999999998543 689999999998
Q ss_pred cCCCccc
Q 002874 351 SRPGGAR 357 (872)
Q Consensus 351 s~p~~~r 357 (872)
+.-++..
T Consensus 88 A~lg~~p 94 (247)
T KOG0149|consen 88 ASLGGKP 94 (247)
T ss_pred hhhcCcc
Confidence 8765543
No 86
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.92 E-value=4.2e-09 Score=88.33 Aligned_cols=70 Identities=37% Similarity=0.635 Sum_probs=64.2
Q ss_pred ceeeeccCCccchhhHhhhhcccCCeEEEEeCCC----CccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002874 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH----KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 281 tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~----skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
+|+|+|||..+++++|+++|+.||.|..+.+... .+++|||+|.+.++|..|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999876543 378999999999999999999999999999999874
No 87
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.91 E-value=3.6e-09 Score=110.93 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=66.6
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEeC--CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002874 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 279 ~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~--~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
..+|||+||++.+|+++|+++|+.||+|.+|++. +..+++|||+|+++++|+.|+. |+|..|.+++|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999874 3456899999999999999995 99999999999998764
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.89 E-value=5.1e-09 Score=109.87 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=66.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002874 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~--~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
..+|||+||++.+|+++|+++|+.||+|.+|++ .+..+++|||+|.++++|+.|+. |+|..|.+++|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 479999999999999999999999999999984 45567899999999999999996 99999999999997653
No 89
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.89 E-value=4.9e-09 Score=86.32 Aligned_cols=56 Identities=23% Similarity=0.594 Sum_probs=50.9
Q ss_pred HHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 211 LRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 211 Lr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
|+++|++||+|..+.+....+++|||+|.+.++|++|++.|+|..+.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999876555699999999999999999999999999999999985
No 90
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.89 E-value=1.1e-07 Score=103.32 Aligned_cols=163 Identities=21% Similarity=0.313 Sum_probs=134.7
Q ss_pred CCCCcEEEEcCCC--CCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccc--cceeeeeec
Q 002874 191 EHPSRTLFVRNIN--SNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFS 266 (872)
Q Consensus 191 e~~srtLfV~NLP--~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~--gr~L~V~~a 266 (872)
..++..|++.=|. +.+|.+-|..+....|+|.+|.+..+..--|+|+|++.+.|++|..+|||..|. -..|+|+|+
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyA 196 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYA 196 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEec
Confidence 3556677766554 679999999999999999999887776668999999999999999999999874 468999998
Q ss_pred CCCCCC----------------------C-------C---------------------------------------cc--
Q 002874 267 IPKDNP----------------------S-------E---------------------------------------KD-- 276 (872)
Q Consensus 267 ~pk~~~----------------------~-------~---------------------------------------~~-- 276 (872)
+|.+-. . . .+
T Consensus 197 kP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~ 276 (494)
T KOG1456|consen 197 KPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGR 276 (494)
T ss_pred CcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCC
Confidence 765100 0 0 00
Q ss_pred --------ccccceeeeccCCc-cchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEE
Q 002874 277 --------VNQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (872)
Q Consensus 277 --------~~~~tLfV~NLp~~-~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~ 347 (872)
.....+.|.+|+.. ++-+.|..+|-.||.|..|+....+.|-|.||..|..+.++|+..||+..+-|.+|.
T Consensus 277 g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 277 GYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 01135788899876 467889999999999999998877889999999999999999999999999999999
Q ss_pred EEecCC
Q 002874 348 LEPSRP 353 (872)
Q Consensus 348 V~~s~p 353 (872)
|.+++.
T Consensus 357 v~~SkQ 362 (494)
T KOG1456|consen 357 VCVSKQ 362 (494)
T ss_pred Eeeccc
Confidence 999864
No 91
>smart00360 RRM RNA recognition motif.
Probab=98.88 E-value=4.7e-09 Score=87.12 Aligned_cols=66 Identities=32% Similarity=0.623 Sum_probs=59.8
Q ss_pred eeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002874 284 VFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 284 V~NLp~~~teedLre~Fs~fG~V~~vri~-----~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
|+|||..+++++|+++|++||.|..+.+. +..+++|||+|.+.++|.+|++.|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999998763 3347899999999999999999999999999999874
No 92
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.88 E-value=8.4e-09 Score=86.52 Aligned_cols=70 Identities=34% Similarity=0.638 Sum_probs=63.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCC----CcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002874 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 196 tLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~----~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
+|+|+|||..+++++|+++|+.||.|..+.+.. ..+|+|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999987533 2489999999999999999999999999999998864
No 93
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=3.7e-09 Score=109.29 Aligned_cols=77 Identities=23% Similarity=0.433 Sum_probs=65.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002874 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
.+..-++|||++|++.+..++|++.|++||+|.+.. .++++|||+||.|.|.++|.+|++. .+-.|.||+..+.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 344568999999999999999999999999998865 3689999999999999999999984 3456788877777
Q ss_pred ecC
Q 002874 265 FSI 267 (872)
Q Consensus 265 ~a~ 267 (872)
.+.
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 653
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.7e-09 Score=110.12 Aligned_cols=82 Identities=27% Similarity=0.487 Sum_probs=75.1
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
..+||||++|...+++.-|...|-+||+|+.|.+ +.+.||||||+|.-.|+|.+||..||+.+|.||.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4579999999999999999999999999999965 46779999999999999999999999999999999999999
Q ss_pred CCcccch
Q 002874 353 PGGARRN 359 (872)
Q Consensus 353 p~~~r~~ 359 (872)
|...+..
T Consensus 89 P~kikeg 95 (298)
T KOG0111|consen 89 PEKIKEG 95 (298)
T ss_pred CccccCC
Confidence 9765543
No 95
>smart00360 RRM RNA recognition motif.
Probab=98.84 E-value=8.6e-09 Score=85.55 Aligned_cols=66 Identities=32% Similarity=0.570 Sum_probs=59.4
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002874 199 VRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 199 V~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
|+|||..+++++|+++|++||.|..+.+ .+.++|+|||+|.+.++|.+|++.+++..+.|++|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999998874 23457999999999999999999999999999998873
No 96
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.81 E-value=1.1e-08 Score=106.66 Aligned_cols=75 Identities=35% Similarity=0.624 Sum_probs=70.0
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002874 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 279 ~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
..+|||+||+.++++++|+++|..||.|..+++ ++..+|||||+|.+.++|..|++.++|..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999988754 467899999999999999999999999999999999999765
No 97
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=4.9e-09 Score=106.84 Aligned_cols=80 Identities=25% Similarity=0.503 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
...|||||++|..+++|.-|...|-+||+|.+|. .+.++||||||+|...++|..||..|++..|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4579999999999999999999999999999997 36789999999999999999999999999999999999999
Q ss_pred CCCCC
Q 002874 267 IPKDN 271 (872)
Q Consensus 267 ~pk~~ 271 (872)
.|.+.
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 88654
No 98
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=9.9e-09 Score=97.75 Aligned_cols=80 Identities=23% Similarity=0.400 Sum_probs=72.1
Q ss_pred ccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002874 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 275 ~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
+......|||.++...+++++|.+.|..||+|+.+.+ ++-.+||++|+|++.++|++|+.+|||..|-|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3445678999999999999999999999999999965 45668999999999999999999999999999999999
Q ss_pred ecCCC
Q 002874 350 PSRPG 354 (872)
Q Consensus 350 ~s~p~ 354 (872)
|+-.+
T Consensus 148 w~Fv~ 152 (170)
T KOG0130|consen 148 WCFVK 152 (170)
T ss_pred EEEec
Confidence 98543
No 99
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=9.2e-08 Score=108.35 Aligned_cols=143 Identities=17% Similarity=0.292 Sum_probs=109.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-------eCCCccc---EEEEEeCCHHHHHHHHHHhcCcccccc
Q 002874 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-------TACKHRG---FVMISYYDIRAARTAMRALQNKPLRRR 259 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-------~~~~srG---~AFVeF~~~e~A~~Ai~~Lng~~l~gr 259 (872)
..+-+++|||++||.+++|++|...|..||.+..=. -....+| |+|+.|+++..++.-+.+..- ...
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 456789999999999999999999999999875322 1123566 999999999999987775432 334
Q ss_pred eeeeeecCCCCCC-------------------CCccccccceeeeccCCccchhhHhhhhc-ccCCeEEEEeCCC-----
Q 002874 260 KLDIHFSIPKDNP-------------------SEKDVNQGTLVVFNLDASVSNDDLRQIFG-AYGEVKEIRETPH----- 314 (872)
Q Consensus 260 ~L~V~~a~pk~~~-------------------~~~~~~~~tLfV~NLp~~~teedLre~Fs-~fG~V~~vri~~~----- 314 (872)
.++++.+.+.... ...-...+||||++||.-++-++|..+|+ -||.|..+-|+..
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 4444333322111 11122467999999999999999999999 7999999976433
Q ss_pred CccEEEEEECCHHHHHHHHHH
Q 002874 315 KRHHKFIEFYDVRAAEAALRA 335 (872)
Q Consensus 315 skG~gFVeF~~~e~A~kAl~~ 335 (872)
.+|-|=|.|.+..+-.+||.+
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 578899999999999999974
No 100
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.69 E-value=2.3e-08 Score=114.13 Aligned_cols=79 Identities=28% Similarity=0.410 Sum_probs=73.4
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002874 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 280 ~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
..+||+|+|+++++++|..+|+..|.|.++++ +++.+||||++|.+.++|.+|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999964 6788999999999999999999999999999999999999876
Q ss_pred cccc
Q 002874 355 GARR 358 (872)
Q Consensus 355 ~~r~ 358 (872)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5544
No 101
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.69 E-value=2.6e-08 Score=113.74 Aligned_cols=76 Identities=25% Similarity=0.430 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002874 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
+.|||+|||++++|++|.++|+..|.|.+++ .+++.+||||++|.+.++|..|++.|+|..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999988 47889999999999999999999999999999999999998644
Q ss_pred C
Q 002874 270 D 270 (872)
Q Consensus 270 ~ 270 (872)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=98.64 E-value=6.6e-08 Score=83.57 Aligned_cols=57 Identities=32% Similarity=0.515 Sum_probs=50.2
Q ss_pred hhhHhhhhc----ccCCeEEEE---e---C--CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002874 293 NDDLRQIFG----AYGEVKEIR---E---T--PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 293 eedLre~Fs----~fG~V~~vr---i---~--~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
+++|+++|+ +||.|.+|. + + ++++|||||+|.+.++|.+|++.|||..++|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999884 2 2 5679999999999999999999999999999999863
No 103
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.64 E-value=8.8e-09 Score=102.63 Aligned_cols=75 Identities=23% Similarity=0.396 Sum_probs=69.3
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
...-|||+|||+.+||.||.-+|++||+|..|.+ +++++||||+.|++.++..-|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 3567999999999999999999999999999954 78899999999999999999999999999999999997653
No 104
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.64 E-value=4.9e-09 Score=104.42 Aligned_cols=76 Identities=20% Similarity=0.409 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
..+.-|||+|||++.||.||.-+|++||+|..|. .+++++||||+.|++.++...|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4578899999999999999999999999999886 47899999999999999999999999999999999999875
Q ss_pred C
Q 002874 267 I 267 (872)
Q Consensus 267 ~ 267 (872)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 4
No 105
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.63 E-value=4.6e-08 Score=101.00 Aligned_cols=76 Identities=33% Similarity=0.626 Sum_probs=70.9
Q ss_pred cceeeeccCCccchhhHhh----hhcccCCeEEEEe--CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002874 280 GTLVVFNLDASVSNDDLRQ----IFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 280 ~tLfV~NLp~~~teedLre----~Fs~fG~V~~vri--~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
.||||.||+..+..++|+. +|++||+|.+|.. +++.+|.|||.|++.+.|-.|+++|+|..+.|+.++|.||+.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 3999999999999999988 9999999999975 567799999999999999999999999999999999999987
Q ss_pred Cc
Q 002874 354 GG 355 (872)
Q Consensus 354 ~~ 355 (872)
+.
T Consensus 90 ~s 91 (221)
T KOG4206|consen 90 DS 91 (221)
T ss_pred cc
Confidence 64
No 106
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.62 E-value=1.7e-08 Score=119.74 Aligned_cols=160 Identities=20% Similarity=0.344 Sum_probs=138.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCC----cccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002874 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK----HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~----srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
....++|||++||+..+++.+|+..|..+|.|.+|.+... ...||||.|.+...+-.|...+.+..|....+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 3467899999999999999999999999999999885322 345899999999999999999999999877777777
Q ss_pred cCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCC--
Q 002874 266 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDING-- 343 (872)
Q Consensus 266 a~pk~~~~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~G-- 343 (872)
..++ ....+.++|++|...+....|...|..||.|+.|.+. +..-|++|.|.+...|+.|++.|-|..|+|
T Consensus 448 G~~k------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 448 GQPK------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred cccc------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCcCCCCC
Confidence 6542 2346789999999999999999999999999999875 445799999999999999999999999987
Q ss_pred cEEEEEecCCCcc
Q 002874 344 KRIKLEPSRPGGA 356 (872)
Q Consensus 344 r~L~V~~s~p~~~ 356 (872)
++|.|.|+.+-..
T Consensus 521 ~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 521 RRLRVDLASPPGA 533 (975)
T ss_pred cccccccccCCCC
Confidence 7899999887543
No 107
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.62 E-value=1.3e-07 Score=103.17 Aligned_cols=210 Identities=13% Similarity=0.195 Sum_probs=134.9
Q ss_pred CcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCC-------CCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHH
Q 002874 141 GGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNG-------VGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRS 213 (872)
Q Consensus 141 Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~-------~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~ 213 (872)
|.+.|.|-+.|....+..+....... .-+.+|+.... -..............-.|-.++||+++++.++.+
T Consensus 103 ge~lvrf~d~e~RdlalkRhkhh~g~--ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~ 180 (508)
T KOG1365|consen 103 GEALVRFVDPEGRDLALKRHKHHMGT--RYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVE 180 (508)
T ss_pred cceEEEecCchhhhhhhHhhhhhccC--CceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHH
Confidence 44678888888888777765533322 12222322211 0011111111222345677899999999999999
Q ss_pred Hhhcc-----CC--eEEEE-eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC-----------------C
Q 002874 214 LFEQY-----GD--IRTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI-----------------P 268 (872)
Q Consensus 214 lFs~f-----G~--I~~v~-~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~-----------------p 268 (872)
+|.+- |. |.-|+ ..++..|-|||.|..+++|+.|+.+ +...+..|-|.+-.+. +
T Consensus 181 FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~ 259 (508)
T KOG1365|consen 181 FFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIP 259 (508)
T ss_pred hcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccC
Confidence 99632 22 22333 2677889999999999999999974 4344444433332110 0
Q ss_pred C----------CCCCCccccccceeeeccCCccchhhHhhhhcccCC-eEE--EEe----CCCCccEEEEEECCHHHHHH
Q 002874 269 K----------DNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGE-VKE--IRE----TPHKRHHKFIEFYDVRAAEA 331 (872)
Q Consensus 269 k----------~~~~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~-V~~--vri----~~~skG~gFVeF~~~e~A~k 331 (872)
. ...........+|.+++||+..+.|+|.++|..|-. |+. |.+ .++..|-|||+|.+.|+|.+
T Consensus 260 ~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~a 339 (508)
T KOG1365|consen 260 GLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARA 339 (508)
T ss_pred CCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHH
Confidence 0 000011122568999999999999999999998753 222 322 45677899999999999999
Q ss_pred HHHHhCCceeCCcEEEEEecCC
Q 002874 332 ALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 332 Al~~LnG~~l~Gr~L~V~~s~p 353 (872)
|....+.+...+|-|+|-.+.-
T Consensus 340 aaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 340 AAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred HHHHHHHhhcccceEEEeeccH
Confidence 9999888888888888866543
No 108
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.62 E-value=6.2e-08 Score=113.43 Aligned_cols=75 Identities=31% Similarity=0.542 Sum_probs=70.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002874 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
+|||||+.|+.+++|.||..+|+.||+|.+|.+ ...+|||||......+|.+|+.+|.+..+.++.|+|.|+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 679999999999999999999999999999964 478999999999999999999999999999999999999644
No 109
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=7e-08 Score=111.00 Aligned_cols=169 Identities=20% Similarity=0.338 Sum_probs=136.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcc-----------C-CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcc
Q 002874 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQY-----------G-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP 255 (872)
Q Consensus 188 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~f-----------G-~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~ 255 (872)
.......+.++|+++|..++++++..+|..- | .|..+.+ +..+.+||++|.+.++|..|+. +++..
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~~-~~~~~ 246 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAMA-LDGII 246 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhhc-ccchh
Confidence 3445677899999999999999999998753 3 2666654 5788999999999999999998 88988
Q ss_pred cccceeeeeecCCCC-------------------CCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----
Q 002874 256 LRRRKLDIHFSIPKD-------------------NPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----- 311 (872)
Q Consensus 256 l~gr~L~V~~a~pk~-------------------~~~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri----- 311 (872)
+.|.++.+....... ...........++|++||..+++++++++...||.++..+.
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA 326 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc
Confidence 999888774321100 00011123458999999999999999999999998877643
Q ss_pred CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCcccc
Q 002874 312 TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARR 358 (872)
Q Consensus 312 ~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r~ 358 (872)
++.++||+|.+|.+......|+..|||..+.+++|.|..+.++....
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~ 373 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNA 373 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhc
Confidence 46789999999999999999999999999999999999998876544
No 110
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=6e-08 Score=92.50 Aligned_cols=78 Identities=18% Similarity=0.457 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
...-.|||.++-..++|++|.+.|..||+|+.+.+ ++-.+|||+|+|.+.++|++|+..+||..|.|.+|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34568999999999999999999999999999873 5668999999999999999999999999999999999997
Q ss_pred CCC
Q 002874 267 IPK 269 (872)
Q Consensus 267 ~pk 269 (872)
--+
T Consensus 150 Fv~ 152 (170)
T KOG0130|consen 150 FVK 152 (170)
T ss_pred Eec
Confidence 543
No 111
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.54 E-value=2.5e-07 Score=101.74 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002874 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
...+|||++||.+++++++++.|++||.|..+. .+.+.+||+||.|.+.+.+++++. .....|.++.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 467999999999999999999999999887765 356789999999999999999998 78889999999999999
Q ss_pred CCCCC
Q 002874 268 PKDNP 272 (872)
Q Consensus 268 pk~~~ 272 (872)
|++..
T Consensus 175 pk~~~ 179 (311)
T KOG4205|consen 175 PKEVM 179 (311)
T ss_pred chhhc
Confidence 88654
No 112
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=2.5e-07 Score=100.31 Aligned_cols=84 Identities=24% Similarity=0.444 Sum_probs=73.2
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHh-cCcccccceeee
Q 002874 185 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDI 263 (872)
Q Consensus 185 g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~L-ng~~l~gr~L~V 263 (872)
-..+..+...++|||++|-..++|.+|++.|.+||+|+++.+. ..+++|||+|.+.++|+.|..++ +...+.|.+|.|
T Consensus 219 ~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~-~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 219 TLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL-PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred ccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee-cccccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3556677788999999999999999999999999999999764 46789999999999999998765 545679999999
Q ss_pred eecCCC
Q 002874 264 HFSIPK 269 (872)
Q Consensus 264 ~~a~pk 269 (872)
.|..++
T Consensus 298 ~Wg~~~ 303 (377)
T KOG0153|consen 298 KWGRPK 303 (377)
T ss_pred EeCCCc
Confidence 999873
No 113
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.48 E-value=1.3e-06 Score=98.56 Aligned_cols=205 Identities=13% Similarity=0.193 Sum_probs=130.7
Q ss_pred CCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCCCCc--ccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhh
Q 002874 139 SGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGT--VAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFE 216 (872)
Q Consensus 139 s~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~~~~--~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs 216 (872)
..|.++|++..+|....|++|.-..-. ..-+.++........ .....+......-.|-+++||+.+|++||.++|+
T Consensus 48 ~sGeA~Ve~~seedv~~AlkkdR~~mg--~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFa 125 (510)
T KOG4211|consen 48 PSGEAYVEFTSEEDVEKALKKDRESMG--HRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFA 125 (510)
T ss_pred cCcceEEEeechHHHHHHHHhhHHHhC--CceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhc
Confidence 346689999999999998887652211 122222222211100 0111122224577999999999999999999999
Q ss_pred ccCCeEE-EE----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC-----------------CC--CC-
Q 002874 217 QYGDIRT-LY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI-----------------PK--DN- 271 (872)
Q Consensus 217 ~fG~I~~-v~----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~-----------------pk--~~- 271 (872)
..-.|.. +. -..+..|-|||+|.+.+.|++|+. -+...|..+-|.|-.+. |. +.
T Consensus 126 GL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~ 204 (510)
T KOG4211|consen 126 GLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRP 204 (510)
T ss_pred CCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccc
Confidence 7644433 11 235677899999999999999998 45555655555543210 00 00
Q ss_pred ---CC--------------------------------------------Ccc---------------------cc-ccce
Q 002874 272 ---PS--------------------------------------------EKD---------------------VN-QGTL 282 (872)
Q Consensus 272 ---~~--------------------------------------------~~~---------------------~~-~~tL 282 (872)
.. .++ .. ...+
T Consensus 205 ~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv 284 (510)
T KOG4211|consen 205 GAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFV 284 (510)
T ss_pred cCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCcee
Confidence 00 000 00 1357
Q ss_pred eeeccCCccchhhHhhhhcccCCe-EEEE--eCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEE
Q 002874 283 VVFNLDASVSNDDLRQIFGAYGEV-KEIR--ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (872)
Q Consensus 283 fV~NLp~~~teedLre~Fs~fG~V-~~vr--i~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~ 347 (872)
..++||+..++.++..+|+..-.+ ..|. -+++..|-++|+|.+.++|..|+- -++..+..+-|.
T Consensus 285 ~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams-kd~anm~hrYVE 351 (510)
T KOG4211|consen 285 HMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG-KDGANMGHRYVE 351 (510)
T ss_pred eecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhc-cCCcccCcceee
Confidence 788999999999999999976443 1222 356678899999999999999986 355555554444
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=98.45 E-value=4.1e-07 Score=78.60 Aligned_cols=56 Identities=20% Similarity=0.358 Sum_probs=49.9
Q ss_pred HHHHHHHhh----ccCCeEEEE---e---C--CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002874 208 DLELRSLFE----QYGDIRTLY---T---A--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 208 eeeLr~lFs----~fG~I~~v~---~---~--~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
+++|+++|+ +||.|.+|. + + +.++|||||+|.+.++|.+|++.|+|+.+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678888888 999999874 2 2 568999999999999999999999999999999876
No 115
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.43 E-value=3.9e-07 Score=98.91 Aligned_cols=78 Identities=36% Similarity=0.524 Sum_probs=69.3
Q ss_pred ccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHh-CCceeCCcEEEEEecCC
Q 002874 275 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL-NRSDINGKRIKLEPSRP 353 (872)
Q Consensus 275 ~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~L-nG~~l~Gr~L~V~~s~p 353 (872)
++..-.+|||++|...+++.+|+++|.+||+|+++++... ++.|||+|.+.++|+.|..+. |...|+|++|+|.|+++
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 3445679999999999999999999999999999998654 569999999999999998766 55688999999999998
No 116
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.40 E-value=9.8e-08 Score=97.68 Aligned_cols=137 Identities=20% Similarity=0.284 Sum_probs=110.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
...+||||.|+-..++|+-|.++|-+-|+|..|.+ ..+.+ ||||.|.++-...-|+..++|..+.++.+.|.+-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 45799999999999999999999999999999974 23334 99999999999999999999999998888876532
Q ss_pred CCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 002874 268 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (872)
Q Consensus 268 pk~~~~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~ 342 (872)
-.... -|+..++++.+.+.|+.-|.+..+++ .+..+.++|+.+....+.-.|+....+..+.
T Consensus 86 G~sha-------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 86 GNSHA-------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred CCCcc-------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 11100 06677899999999999999988875 3456789999998888777888766655443
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.38 E-value=5.8e-07 Score=105.50 Aligned_cols=80 Identities=28% Similarity=0.382 Sum_probs=75.1
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCccc
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 357 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~~r 357 (872)
..+||||+.|+..+++.||+.+|+.||+|.+|.+. ..+++|||......+|.+|+.+|+...+.++.|+|.|+..++.+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 46799999999999999999999999999999886 46899999999999999999999999999999999999988876
Q ss_pred c
Q 002874 358 R 358 (872)
Q Consensus 358 ~ 358 (872)
.
T Consensus 499 s 499 (894)
T KOG0132|consen 499 S 499 (894)
T ss_pred h
Confidence 6
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=6e-08 Score=114.86 Aligned_cols=141 Identities=13% Similarity=0.216 Sum_probs=120.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
+...++||+||+..+.+.+|...|..+|.+..+. ..++.+|+|||.|..+++|.+|+.......+.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 3446899999999999999999999999877665 35678999999999999999999854443332
Q ss_pred CCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 002874 267 IPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (872)
Q Consensus 267 ~pk~~~~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~ 342 (872)
...|+|+|.|+..|.++|+.+|.++|.+.+.++ .++.+|.++|.|.+..+|.+++..+++..+.
T Consensus 736 ------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 736 ------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred ------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhh
Confidence 346999999999999999999999999999864 3577899999999999999999988888888
Q ss_pred CcEEEEEecCC
Q 002874 343 GKRIKLEPSRP 353 (872)
Q Consensus 343 Gr~L~V~~s~p 353 (872)
-+.+.|..+.|
T Consensus 804 E~~~~v~vsnp 814 (881)
T KOG0128|consen 804 ENNGEVQVSNP 814 (881)
T ss_pred hcCccccccCC
Confidence 77788877665
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.8e-07 Score=97.35 Aligned_cols=77 Identities=25% Similarity=0.399 Sum_probs=70.8
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
+...|||.-|++-+++++|.-+|+.||.|++|.+ ++.+-.||||+|++.+++++|.-+|++..|+.++|.|.|++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4578999999999999999999999999999965 45677899999999999999999999999999999999987
Q ss_pred CC
Q 002874 353 PG 354 (872)
Q Consensus 353 p~ 354 (872)
.-
T Consensus 318 SV 319 (479)
T KOG0415|consen 318 SV 319 (479)
T ss_pred hh
Confidence 54
No 120
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.31 E-value=7.9e-07 Score=93.27 Aligned_cols=81 Identities=21% Similarity=0.402 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002874 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
..+.|.|||-.||.+..+.||..+|-.||.|.+.+ .++.+|.|+||.|.++.+|+.||.+|||..|.=++|+|+.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 35679999999999999999999999999999876 3678999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002874 266 SIPKDN 271 (872)
Q Consensus 266 a~pk~~ 271 (872)
.+||+.
T Consensus 362 KRPkda 367 (371)
T KOG0146|consen 362 KRPKDA 367 (371)
T ss_pred cCcccc
Confidence 888764
No 121
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.28 E-value=8e-07 Score=97.20 Aligned_cols=165 Identities=20% Similarity=0.273 Sum_probs=128.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
...+++|++++...+.+.++..++..+|.+..+. -...++|++.|.|...+.+..|+.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4578999999999999999999999999766554 24578999999999999999999844434554544443332
Q ss_pred CCCCC-----C-CCcccccccee-eeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHH
Q 002874 267 IPKDN-----P-SEKDVNQGTLV-VFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALR 334 (872)
Q Consensus 267 ~pk~~-----~-~~~~~~~~tLf-V~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~ 334 (872)
..... . ........+++ |.||++++++++|+..|..+|.|..+++ ++..++|++|+|.....+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 21110 0 00111234555 9999999999999999999999999976 34568999999999999999998
Q ss_pred HhCCceeCCcEEEEEecCCCccc
Q 002874 335 ALNRSDINGKRIKLEPSRPGGAR 357 (872)
Q Consensus 335 ~LnG~~l~Gr~L~V~~s~p~~~r 357 (872)
. +...+.++.+.|.+..+....
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred c-ccCcccCcccccccCCCCccc
Confidence 7 888999999999998876543
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.20 E-value=4.4e-06 Score=85.42 Aligned_cols=81 Identities=17% Similarity=0.345 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002874 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQY-GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~f-G~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
........+||..+|..+.+.++..+|.+| |.|++++ .++.++|||||+|++.+.|+-|-+.||+..|.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344567889999999999999999999999 6777776 3788999999999999999999999999999999999
Q ss_pred eeecCCC
Q 002874 263 IHFSIPK 269 (872)
Q Consensus 263 V~~a~pk 269 (872)
|++-.|.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9997654
No 123
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.19 E-value=3.4e-06 Score=86.27 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=71.2
Q ss_pred ccccceeeeccCCccchhhHhhhhccc-CCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002874 277 VNQGTLVVFNLDASVSNDDLRQIFGAY-GEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~teedLre~Fs~f-G~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
...+.++|..+|.-+.+.++...|.+| |.|..+++ +|.++|||||+|++.+.|.-|-+.||++.|.|+.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345789999999999999999999998 67777765 688999999999999999999999999999999999999
Q ss_pred cCCC
Q 002874 351 SRPG 354 (872)
Q Consensus 351 s~p~ 354 (872)
-.|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8887
No 124
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2.3e-06 Score=92.85 Aligned_cols=79 Identities=20% Similarity=0.383 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002874 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 190 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
...|.+.|||.-|.+-+++++|.-+|+.||.|.+|.+ ++.+..||||+|.+.+++++|+-+|++..|.++.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 3467899999999999999999999999999999873 56778899999999999999999999999999999999
Q ss_pred ecCC
Q 002874 265 FSIP 268 (872)
Q Consensus 265 ~a~p 268 (872)
|+..
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 9753
No 125
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.16 E-value=1e-06 Score=92.24 Aligned_cols=159 Identities=19% Similarity=0.228 Sum_probs=115.0
Q ss_pred EEEcCCCCCCCHHH-H--HHHhhccCCeEEEE----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002874 197 LFVRNINSNVEDLE-L--RSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 197 LfV~NLP~~vteee-L--r~lFs~fG~I~~v~----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
.++.++-..+..+- | ...|+.|-.+...+ ..++-++++|+.|.....-.++-..-++++++-.++++.-....
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 34444444444333 2 45566555443322 34567889999999988888888877778887777666544333
Q ss_pred CCCC--CccccccceeeeccCCccchhhHhhhhcccCCeEEE-----EeCCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 002874 270 DNPS--EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI-----RETPHKRHHKFIEFYDVRAAEAALRALNRSDIN 342 (872)
Q Consensus 270 ~~~~--~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~v-----ri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~ 342 (872)
.++. +.+.+.-+||.+.|..+++++-|...|.+|-..... .-+++++||+||.|.+..++.+|+++|+|+.++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 3332 233456789999999999999999999998644332 236789999999999999999999999999999
Q ss_pred CcEEEEEecCCCc
Q 002874 343 GKRIKLEPSRPGG 355 (872)
Q Consensus 343 Gr~L~V~~s~p~~ 355 (872)
.+.|++.-+.-+.
T Consensus 259 srpiklRkS~wke 271 (290)
T KOG0226|consen 259 SRPIKLRKSEWKE 271 (290)
T ss_pred cchhHhhhhhHHh
Confidence 9999987665443
No 126
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.06 E-value=3.2e-06 Score=88.19 Aligned_cols=99 Identities=22% Similarity=0.430 Sum_probs=80.8
Q ss_pred ceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC------
Q 002874 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG------ 354 (872)
Q Consensus 281 tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~------ 354 (872)
.+||++|++.+.+.+|..+|..||.|..|.+. .||+||+|.+..+|..|+..||+++|.|-++.|++++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGR 79 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeecccccccccCC
Confidence 58999999999999999999999999999874 689999999999999999999999999999999999842
Q ss_pred ---cccc---------------hhhhcCChhccHHHHHHhhhccCC
Q 002874 355 ---GARR---------------NLMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 355 ---~~r~---------------~~v~ql~~~~~q~~~~~~f~~~Gs 382 (872)
+.+. ..++++...+.+.++...|.++|.
T Consensus 80 ~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~ 125 (216)
T KOG0106|consen 80 PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGE 125 (216)
T ss_pred CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCC
Confidence 1000 134455556666677777777663
No 127
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=98.05 E-value=3.7e-06 Score=85.90 Aligned_cols=90 Identities=21% Similarity=0.382 Sum_probs=60.9
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHhhcCCceeeEEEee--eccc--ccceeEEEEEeccChhHHHHHHHHhcCCcccCCC
Q 002874 710 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLP--IDFK--NKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFN 785 (872)
Q Consensus 710 d~rTTvMirNIPnk~t~~~L~~~id~~~~~~ydf~Ylp--~df~--~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~ 785 (872)
..++.|.||++|+.+|++.+++.|+......++|-|.+ .+.. ..+-...|||||.+.+++..|.+.|+|+.|..-.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 46789999999999999999998887666666566655 3222 3345677999999999999999999999998665
Q ss_pred C-ccEEEEEeeeccc
Q 002874 786 S-EKVASLAYARIQG 799 (872)
Q Consensus 786 s-~k~~~v~~A~iQG 799 (872)
. ..++.|.||-.|-
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 4 4899999998764
No 128
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.01 E-value=1.4e-05 Score=82.44 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=67.7
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEE--EeCCCC----ccEEEEEECCHHHHHHHHHHhCCceeC---CcEEEE
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI--RETPHK----RHHKFIEFYDVRAAEAALRALNRSDIN---GKRIKL 348 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~v--ri~~~s----kG~gFVeF~~~e~A~kAl~~LnG~~l~---Gr~L~V 348 (872)
.-+||||.+||.++...||..+|..|-..+.+ +.+.+. +-+|||.|.+..+|.+|+.+|||..|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 35799999999999999999999999666555 344332 368999999999999999999999986 789999
Q ss_pred EecCCCcccc
Q 002874 349 EPSRPGGARR 358 (872)
Q Consensus 349 ~~s~p~~~r~ 358 (872)
++++....++
T Consensus 113 ElAKSNtK~k 122 (284)
T KOG1457|consen 113 ELAKSNTKRK 122 (284)
T ss_pred eehhcCcccc
Confidence 9998765443
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.91 E-value=1.3e-05 Score=91.16 Aligned_cols=74 Identities=24% Similarity=0.473 Sum_probs=67.8
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002874 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 280 ~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
+.|+|.+|...+-..+|+.+|++||+|+-+++ ++..++|+||++.+.++|.+||..|+.++|.|+.|.|+.++.
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 58999999999999999999999999988865 345588999999999999999999999999999999998874
No 130
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.90 E-value=3.1e-05 Score=82.51 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
+.-..+|+|.|||+.|++++|+++|+.||.+..+-+ .+.+.|+|-|.|...++|.+|++.+++..+.|+++.+...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344588999999999999999999999998887763 5778899999999999999999999999999999998876
Q ss_pred CC
Q 002874 267 IP 268 (872)
Q Consensus 267 ~p 268 (872)
.+
T Consensus 160 ~~ 161 (243)
T KOG0533|consen 160 SS 161 (243)
T ss_pred cC
Confidence 43
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.88 E-value=3.7e-05 Score=87.64 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=68.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
.-.+.|||.+|...+-..+|+.+|++||+|.-.++ ++-.++|+||++.+.++|.+||..|+.+.|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999987662 3446789999999999999999999999999999999886
Q ss_pred C
Q 002874 267 I 267 (872)
Q Consensus 267 ~ 267 (872)
.
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 4
No 132
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.86 E-value=2.6e-05 Score=91.14 Aligned_cols=80 Identities=18% Similarity=0.350 Sum_probs=71.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--------CCCcccEEEEEeCCHHHHHHHHHHhcCcccccc
Q 002874 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 259 (872)
Q Consensus 188 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~--------~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr 259 (872)
..+...++.|||+||++.++++.|...|..||+|.+|++ ..+.+.|+||.|.+..+|++|++.|+|..+.+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 344566889999999999999999999999999999984 234567999999999999999999999999999
Q ss_pred eeeeeecC
Q 002874 260 KLDIHFSI 267 (872)
Q Consensus 260 ~L~V~~a~ 267 (872)
.+++.|+.
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 99999984
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.83 E-value=1.6e-06 Score=95.79 Aligned_cols=149 Identities=17% Similarity=0.326 Sum_probs=122.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCc-ccccceeeeeecCCCCC
Q 002874 195 RTLFVRNINSNVEDLELRSLFEQY--GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK-PLRRRKLDIHFSIPKDN 271 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~f--G~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~-~l~gr~L~V~~a~pk~~ 271 (872)
..+|++||.+.++.++|+.+|... +--..+ --..|||||.+.+...|.+|++.++|+ .+.|+++.+.++.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f---l~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF---LVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce---eeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 468999999999999999999754 111111 124689999999999999999999986 47899999999877654
Q ss_pred CCCccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCC--ccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEE
Q 002874 272 PSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHK--RHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 349 (872)
Q Consensus 272 ~~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~s--kG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~ 349 (872)
. .+.+-|+|+|+...++-|..+...||.|..|..+... .-..-|+|...+.++.||..|+|..+....++|.
T Consensus 79 r------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 79 R------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred H------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 3 4569999999999999999999999999998653221 2234578999999999999999999999999998
Q ss_pred ecC
Q 002874 350 PSR 352 (872)
Q Consensus 350 ~s~ 352 (872)
|--
T Consensus 153 YiP 155 (584)
T KOG2193|consen 153 YIP 155 (584)
T ss_pred cCc
Confidence 854
No 134
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.74 E-value=4.1e-05 Score=87.49 Aligned_cols=74 Identities=23% Similarity=0.377 Sum_probs=62.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---C--CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---A--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---~--~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
....+|||+|||.++++++|++.|.+||+|+...+ . .+..+||||+|.+.++++.||.+ +-..+.+++|.|+--
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 34566999999999999999999999999987653 1 33448999999999999999985 467788999999754
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.73 E-value=6.7e-05 Score=79.96 Aligned_cols=77 Identities=23% Similarity=0.361 Sum_probs=68.7
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
...+|+|.||+..++++||+++|..||.++.+-+ .+.+.|.|-|.|...++|.+|++.+||..++|+.+++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3468999999999999999999999998887754 466789999999999999999999999999999999887655
Q ss_pred C
Q 002874 354 G 354 (872)
Q Consensus 354 ~ 354 (872)
.
T Consensus 162 ~ 162 (243)
T KOG0533|consen 162 P 162 (243)
T ss_pred c
Confidence 4
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.72 E-value=3.8e-05 Score=87.76 Aligned_cols=76 Identities=26% Similarity=0.453 Sum_probs=65.1
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEeC-----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002874 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 280 ~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~-----~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
.+|||+|||++++.++|+++|+.||.|+..+|. .+..+||||+|.+.++++.||++ +-..|++++|.|+-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 469999999999999999999999999987552 22338999999999999999986 467899999999987765
Q ss_pred cc
Q 002874 355 GA 356 (872)
Q Consensus 355 ~~ 356 (872)
..
T Consensus 368 ~~ 369 (419)
T KOG0116|consen 368 FR 369 (419)
T ss_pred cc
Confidence 43
No 137
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.66 E-value=0.00039 Score=76.65 Aligned_cols=153 Identities=17% Similarity=0.236 Sum_probs=108.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002874 193 PSRTLFVRNINSNVEDLELRSLFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~f-----G~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
.+..|-.++||+..++.+|..+|.-. |.+......++..|.|.|.|.+.+.-+.|++ -+...+.++.+.|-.+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeeccC
Confidence 45677789999999999999999743 3333333456778999999999999999998 46666777877776543
Q ss_pred CCCC---------CC---CccccccceeeeccCCccchhhHhhhhccc----C---CeEEEEe-CCCCccEEEEEECCHH
Q 002874 268 PKDN---------PS---EKDVNQGTLVVFNLDASVSNDDLRQIFGAY----G---EVKEIRE-TPHKRHHKFIEFYDVR 327 (872)
Q Consensus 268 pk~~---------~~---~~~~~~~tLfV~NLp~~~teedLre~Fs~f----G---~V~~vri-~~~skG~gFVeF~~~e 327 (872)
..+- .. ....++-.|..++||+++++.++.++|.+- | .|..|+- .++..|-|||.|..++
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee 217 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEE 217 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHH
Confidence 3310 00 111234568889999999999999999631 2 2344443 5677899999999999
Q ss_pred HHHHHHHHhCCceeCCcEEE
Q 002874 328 AAEAALRALNRSDINGKRIK 347 (872)
Q Consensus 328 ~A~kAl~~LnG~~l~Gr~L~ 347 (872)
+|+.||.+ |...|+-|-|+
T Consensus 218 ~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 218 DAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred HHHHHHHH-HHHHHhHHHHH
Confidence 99999984 43444444444
No 138
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.65 E-value=2.1e-05 Score=86.55 Aligned_cols=158 Identities=17% Similarity=0.148 Sum_probs=119.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC--------CCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~--------~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
..|-|.||.+.++.+.++.||.-.|+|..+.+. +.....|||.|.|...+..|-. |.++.|-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 489999999999999999999999999988743 2356789999999999999987 8888888877776442
Q ss_pred CCCC-----------------------------CCC--C----------c-----------cccccceeeeccCCccchh
Q 002874 267 IPKD-----------------------------NPS--E----------K-----------DVNQGTLVVFNLDASVSND 294 (872)
Q Consensus 267 ~pk~-----------------------------~~~--~----------~-----------~~~~~tLfV~NLp~~~tee 294 (872)
.... .+. . . .....|++|.+|...+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 1100 000 0 0 0012589999999999999
Q ss_pred hHhhhhcccCCeEEEEeC-CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCC
Q 002874 295 DLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 354 (872)
Q Consensus 295 dLre~Fs~fG~V~~vri~-~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~ 354 (872)
++-+.|..+|+|.+.++. +...-+|-|+|........|++ ++|.++.-....+..-.|.
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCcc
Confidence 999999999999998763 3345678899999999999998 6777776444444444443
No 139
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.61 E-value=7e-05 Score=87.71 Aligned_cols=78 Identities=27% Similarity=0.382 Sum_probs=70.1
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEEeC--------CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEE
Q 002874 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~--------~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~ 347 (872)
+...+.|||.||++.++++.|...|..||.|..+++. ...+.+|||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4456789999999999999999999999999999762 23467899999999999999999999999999999
Q ss_pred EEecCC
Q 002874 348 LEPSRP 353 (872)
Q Consensus 348 V~~s~p 353 (872)
+.|+++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999865
No 140
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.57 E-value=9.2e-05 Score=78.80 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=68.8
Q ss_pred cccccceeeeccCCccchhhHhhhhcccCCeEEEE-----eCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002874 276 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vr-----i~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
......+||+|+++.+|.+++..+|+.||.|..+. ..++.+||+||+|.+.+.++.|++ |||..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 44567899999999999999999999999997553 345689999999999999999999 999999999999988
Q ss_pred cCCC
Q 002874 351 SRPG 354 (872)
Q Consensus 351 s~p~ 354 (872)
.+-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7643
No 141
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.51 E-value=0.00016 Score=84.44 Aligned_cols=167 Identities=14% Similarity=0.046 Sum_probs=121.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcc-CC---eEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002874 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQY-GD---IRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 188 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~f-G~---I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
+....+++.+-+++.+.+.++.+++++|..- -. |..-.+.+...|-++|.|....++++|++ -+...+..|.+.+
T Consensus 305 pqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~ 383 (944)
T KOG4307|consen 305 PQVVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQT 383 (944)
T ss_pred CcccchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceee
Confidence 3444566778889999999999999999632 11 22222445558999999999999999987 5666667777766
Q ss_pred eecCCC------------CCC------------------C-----CccccccceeeeccCCccchhhHhhhhcccCCeEE
Q 002874 264 HFSIPK------------DNP------------------S-----EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 308 (872)
Q Consensus 264 ~~a~pk------------~~~------------------~-----~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~ 308 (872)
...-.. ... . .......+|||..||..+++.++-+.|...-.|++
T Consensus 384 ~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved 463 (944)
T KOG4307|consen 384 GPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVED 463 (944)
T ss_pred cCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhh
Confidence 432100 000 0 00112358999999999999999999998877776
Q ss_pred -EEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002874 309 -IRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 309 -vri~----~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
|.++ .+.++.|||+|..++++.+|+..-+...++-+.|+|.-...+.
T Consensus 464 ~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 464 FIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred eeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 6553 3456789999999999999998777777888899997665443
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.50 E-value=0.00037 Score=62.24 Aligned_cols=68 Identities=19% Similarity=0.381 Sum_probs=49.2
Q ss_pred cEEEEcCCCCCCCHHHH----HHHhhccC-CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002874 195 RTLFVRNINSNVEDLEL----RSLFEQYG-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 195 rtLfV~NLP~~vteeeL----r~lFs~fG-~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
..|||.|||.+.+...| +.++.-|| .|..| ..+.|+|.|.+.+.|++|.+.|+|..+.|.+|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 57999999999987765 56666776 67776 36899999999999999999999999999999999974
No 143
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.39 E-value=0.00027 Score=77.27 Aligned_cols=74 Identities=14% Similarity=0.334 Sum_probs=65.8
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEE--------Ee----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEE
Q 002874 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEI--------RE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 346 (872)
Q Consensus 279 ~~tLfV~NLp~~~teedLre~Fs~fG~V~~v--------ri----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L 346 (872)
.+.|||.|||.++|.+++.++|++||.|..- ++ .++-+|=|.|.|-..++..-|++.|++..|.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 4569999999999999999999999987653 22 35568889999999999999999999999999999
Q ss_pred EEEecC
Q 002874 347 KLEPSR 352 (872)
Q Consensus 347 ~V~~s~ 352 (872)
+|+.|+
T Consensus 214 rVerAk 219 (382)
T KOG1548|consen 214 RVERAK 219 (382)
T ss_pred EEehhh
Confidence 999886
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.39 E-value=0.00076 Score=62.40 Aligned_cols=73 Identities=18% Similarity=0.340 Sum_probs=58.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccc----cceeee
Q 002874 195 RTLFVRNINSNVEDLELRSLFEQY--GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR----RRKLDI 263 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~f--G~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~----gr~L~V 263 (872)
+||.|+|||...|.++|.+++... |...-++ .+..+.|||||.|.+++.|.+..+.++|+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999988754 3333333 25568999999999999999999999998875 455667
Q ss_pred eecC
Q 002874 264 HFSI 267 (872)
Q Consensus 264 ~~a~ 267 (872)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7664
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.32 E-value=0.00025 Score=75.57 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=69.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002874 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
..+.+.+.+||+|+.+.++.+++...|+.||.|..+. ..+..+|||||+|.+.+.++.|+. |+|..|.++.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 3456679999999999999999999999999997554 345689999999999999999999 9999999999999
Q ss_pred eecC
Q 002874 264 HFSI 267 (872)
Q Consensus 264 ~~a~ 267 (872)
.+..
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 8754
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.27 E-value=0.00068 Score=60.57 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=48.1
Q ss_pred cceeeeccCCccchh----hHhhhhcccC-CeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002874 280 GTLVVFNLDASVSND----DLRQIFGAYG-EVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 280 ~tLfV~NLp~~~tee----dLre~Fs~fG-~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
..|+|.|||.+.+.. .|++++.-+| .|..| . .+-|+|.|.+.+.|.+|.+.|+|..+-|++|.|++...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 469999999987754 4677777885 56665 2 46799999999999999999999999999999999854
No 147
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.25 E-value=0.00018 Score=74.31 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=66.4
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecC
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 352 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~----~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~ 352 (872)
...||||.|+...++++-|.++|-..|.|..|.|. .+.+ ||||+|.++-...-|++.|||..+.+..|+|.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 45799999999999999999999999999999773 2234 99999999999999999999999999999988754
No 148
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.16 E-value=0.00013 Score=87.37 Aligned_cols=177 Identities=14% Similarity=0.145 Sum_probs=133.0
Q ss_pred CCcEEEEcCCCCCCCHH-HHHHHhhccCCeEEEEeCC-----CcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 193 PSRTLFVRNINSNVEDL-ELRSLFEQYGDIRTLYTAC-----KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 193 ~srtLfV~NLP~~vtee-eLr~lFs~fG~I~~v~~~~-----~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
..+...+.++-+...+. ..+..|..+|.|+.|+... ....+.++++....+++.|.. ..+.-+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 34677788887777666 5788999999999987322 122278899999999999887 6778888888888777
Q ss_pred CCCCCCCCcc------ccccceeeeccCCccchhhHhhhhcccCCeEEEEe-----CCCCccEEEEEECCHHHHHHHHHH
Q 002874 267 IPKDNPSEKD------VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRA 335 (872)
Q Consensus 267 ~pk~~~~~~~------~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri-----~~~skG~gFVeF~~~e~A~kAl~~ 335 (872)
.++....... ....++||+||+..+.+++|...|..+|.+..+++ .++-+|+|+|+|...++|.+|+..
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 6654222111 12358999999999999999999999998887754 355689999999999999999986
Q ss_pred hCCceeCCcEEEEEecCCCcccchhhhcCChhccHHHHHHhhhccCCC
Q 002874 336 LNRSDINGKRIKLEPSRPGGARRNLMQQLNQELEQDEARGFRHQVGSP 383 (872)
Q Consensus 336 LnG~~l~Gr~L~V~~s~p~~~r~~~v~ql~~~~~q~~~~~~f~~~Gsp 383 (872)
..++.++.. ...+.+.+++-|.+.++.++...|.+
T Consensus 729 ~d~~~~gK~-------------~v~i~g~pf~gt~e~~k~l~~~~gn~ 763 (881)
T KOG0128|consen 729 RDSCFFGKI-------------SVAISGPPFQGTKEELKSLASKTGNV 763 (881)
T ss_pred hhhhhhhhh-------------hhheeCCCCCCchHHHHhhccccCCc
Confidence 665555522 22556677777888888887766643
No 149
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.14 E-value=0.00088 Score=70.73 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=65.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCe-----EEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDI-----RTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I-----~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
..+-+||.+.|..+++++-|-..|.+|-.. .+-+.+++++||+||.|.++.++..|+++++|+.++.++|++..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 456799999999999999999999998643 222257899999999999999999999999999999999998755
Q ss_pred C
Q 002874 267 I 267 (872)
Q Consensus 267 ~ 267 (872)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 3
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.12 E-value=0.0008 Score=63.18 Aligned_cols=71 Identities=27% Similarity=0.426 Sum_probs=45.2
Q ss_pred ceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC-----ceeCCcEEEEEecC
Q 002874 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR-----SDINGKRIKLEPSR 352 (872)
Q Consensus 281 tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG-----~~l~Gr~L~V~~s~ 352 (872)
.|+|.+++..++.++|++.|+.||.|..|.+.. ....|+|.|.+.++|++|+.++.- ..|.+..+.++.-.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLe 78 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLE 78 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECC
Confidence 588999999999999999999999999998863 345799999999999999998843 35677776665543
No 151
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.80 E-value=0.0027 Score=69.81 Aligned_cols=164 Identities=18% Similarity=0.281 Sum_probs=101.3
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCC
Q 002874 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNG 179 (872)
Q Consensus 101 iwNlLp~~~dav~s~vadel~l~klfsd~~diee-dlfss~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~ 179 (872)
.++++...++.....+..+.+++- +..-... +-..+.+++.+.|+..+....++.-.. ......+.+. ..+...
T Consensus 93 ~g~~s~~~e~~~~~~~~~~~g~~~---~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~-~~~~~~~~~~-~dl~~~ 167 (285)
T KOG4210|consen 93 VGELSENIEESEDDNFSSEAGLRV---DARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESG-SKVLDGNKGE-KDLNTR 167 (285)
T ss_pred ccccccchhhccccccchhhcCcc---cchhhhhccccccccceeeccccHHHHHHHHHhhh-cccccccccc-Cccccc
Confidence 666666644443444444444433 1111111 334567788999988776555444322 0011111110 001100
Q ss_pred CCc--ccCCCCCCCCCCcEEE-EcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHh
Q 002874 180 VGT--VAGEHPYGEHPSRTLF-VRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRAL 251 (872)
Q Consensus 180 ~~~--~~g~~~~~e~~srtLf-V~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~~srG~AFVeF~~~e~A~~Ai~~L 251 (872)
.+. ........-.+..++| |++|+..+++++|+..|..+|.|..+++ .+..+|||+|.|.+...+..|+..
T Consensus 168 ~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~- 246 (285)
T KOG4210|consen 168 RGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND- 246 (285)
T ss_pred ccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-
Confidence 000 0011112223445555 9999999999999999999999999983 566889999999999999999987
Q ss_pred cCcccccceeeeeecCCCC
Q 002874 252 QNKPLRRRKLDIHFSIPKD 270 (872)
Q Consensus 252 ng~~l~gr~L~V~~a~pk~ 270 (872)
+...+.++++.+.+..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 247 QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred ccCcccCcccccccCCCCc
Confidence 8889999999999876543
No 152
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.63 E-value=0.0021 Score=72.24 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=86.8
Q ss_pred hHHHhhcccccccccCCCccccccc-cc-----cCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCcc-cc--ccCCCC
Q 002874 110 NDLLAGLVDDFDLRGLPSQLEDLED-DL-----FDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIA-HY--PISNGV 180 (872)
Q Consensus 110 dav~s~vadel~l~klfsd~~diee-dl-----fss~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~-~~--~l~n~~ 180 (872)
++++..|++..++ .|+|.--+.+ -| -...|.|-|.+-..-...+++++.+-. ++..+. .. .+...-
T Consensus 138 edl~~kIv~QVEy--yFSDenL~~d~fLlkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~---va~ALr~S~kL~vseDg 212 (484)
T KOG1855|consen 138 EDLAAKIVDQVEY--YFSDENLLKDAFLLKHVRRNKEGYVPVKLVASFKKVKALTRDWKL---VADALRKSSKLEVSEDG 212 (484)
T ss_pred HHHHHHHHHHhhe--eeccccccchHHHHHHHhcCCCCceeeehhhhHHHHHHHhhhhHH---HHHHHhhcceEEEccCC
Confidence 6888889987766 5555444333 11 123355555444444444555554411 110000 00 000001
Q ss_pred Cccc-----CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCC------------------cccEEEEE
Q 002874 181 GTVA-----GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK------------------HRGFVMIS 237 (872)
Q Consensus 181 ~~~~-----g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~------------------srG~AFVe 237 (872)
.++. -+....+-++++|.+.|||.+-.-+.|.++|..+|.|..|++..+ .+-+|+|+
T Consensus 213 kKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvE 292 (484)
T KOG1855|consen 213 KKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVE 292 (484)
T ss_pred ceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhh
Confidence 1111 122234568999999999999999999999999999999984222 25689999
Q ss_pred eCCHHHHHHHHHHhcCccc
Q 002874 238 YYDIRAARTAMRALQNKPL 256 (872)
Q Consensus 238 F~~~e~A~~Ai~~Lng~~l 256 (872)
|...+.|++|.+.++...-
T Consensus 293 ye~~~~A~KA~e~~~~e~~ 311 (484)
T KOG1855|consen 293 YEEVEAARKARELLNPEQN 311 (484)
T ss_pred hhhhHHHHHHHHhhchhhh
Confidence 9999999999997754433
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.61 E-value=0.0053 Score=66.97 Aligned_cols=76 Identities=18% Similarity=0.394 Sum_probs=62.2
Q ss_pred ccceeeeccCCccchhh----H--hhhhcccCCeEEEEeCCCC------cc-E-EEEEECCHHHHHHHHHHhCCceeCCc
Q 002874 279 QGTLVVFNLDASVSNDD----L--RQIFGAYGEVKEIRETPHK------RH-H-KFIEFYDVRAAEAALRALNRSDINGK 344 (872)
Q Consensus 279 ~~tLfV~NLp~~~teed----L--re~Fs~fG~V~~vri~~~s------kG-~-gFVeF~~~e~A~kAl~~LnG~~l~Gr 344 (872)
..-+||-+|++.+..|+ | .++|.+||.|+.|.+..+. .+ + .||.|.+.|+|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 44689999999987777 2 4789999999999764321 12 2 39999999999999999999999999
Q ss_pred EEEEEecCCC
Q 002874 345 RIKLEPSRPG 354 (872)
Q Consensus 345 ~L~V~~s~p~ 354 (872)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987643
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.50 E-value=0.0076 Score=56.66 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=39.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCc
Q 002874 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 254 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~ 254 (872)
+.|.|.+++..++-++|++.|++||.|..|... +....|+|.|.+.++|++|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~-~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS-RGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec-CCCCEEEEEECCcchHHHHHHHHHhc
Confidence 468899999999999999999999999999643 45568999999999999999977544
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.46 E-value=0.0022 Score=71.61 Aligned_cols=101 Identities=24% Similarity=0.337 Sum_probs=82.3
Q ss_pred cceeeeccCCccchhhHhhhhccc--CCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCc-eeCCcEEEEEecCCCcc
Q 002874 280 GTLVVFNLDASVSNDDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRS-DINGKRIKLEPSRPGGA 356 (872)
Q Consensus 280 ~tLfV~NLp~~~teedLre~Fs~f--G~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~-~l~Gr~L~V~~s~p~~~ 356 (872)
..||++||.+.++..+|..+|... +.-..+- -..||+||.+.+..-|.+|++.++|+ ++.|+++.|..+-++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 368999999999999999999754 1111111 13689999999999999999999997 89999999999988765
Q ss_pred cc--hhhhcCChhccHHHHHHhhhccCCC
Q 002874 357 RR--NLMQQLNQELEQDEARGFRHQVGSP 383 (872)
Q Consensus 357 r~--~~v~ql~~~~~q~~~~~~f~~~Gsp 383 (872)
+. ..+++.++.+..+-+..+..+||.+
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~v 107 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTV 107 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCH
Confidence 44 4667888888888888888899865
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.32 E-value=0.0061 Score=66.48 Aligned_cols=88 Identities=24% Similarity=0.310 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCCHHHH------HHHhhccCCeEEEEeCCCc------ccE--EEEEeCCHHHHHHHHHHhcCcccc
Q 002874 192 HPSRTLFVRNINSNVEDLEL------RSLFEQYGDIRTLYTACKH------RGF--VMISYYDIRAARTAMRALQNKPLR 257 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeL------r~lFs~fG~I~~v~~~~~s------rG~--AFVeF~~~e~A~~Ai~~Lng~~l~ 257 (872)
....-+||-+||+.+..+++ .++|.+||.|..|.+..+. .+. .||.|.+.++|.+||.+.+|..+.
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 34578999999999888873 3799999999998743221 122 499999999999999999999999
Q ss_pred cceeeeeecCCCCCCCCccccccceeeeccC
Q 002874 258 RRKLDIHFSIPKDNPSEKDVNQGTLVVFNLD 288 (872)
Q Consensus 258 gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp 288 (872)
|+.|+..|...+ -++-|++|++
T Consensus 192 Gr~lkatYGTTK---------YCtsYLRn~~ 213 (480)
T COG5175 192 GRVLKATYGTTK---------YCTSYLRNAV 213 (480)
T ss_pred CceEeeecCchH---------HHHHHHcCCC
Confidence 999999886422 3456666654
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.25 E-value=0.0053 Score=69.09 Aligned_cols=66 Identities=32% Similarity=0.468 Sum_probs=55.7
Q ss_pred CccccccceeeeccCCccchhhHhhhhcccCCeEEEEeCCC------------------CccEEEEEECCHHHHHHHHHH
Q 002874 274 EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH------------------KRHHKFIEFYDVRAAEAALRA 335 (872)
Q Consensus 274 ~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~------------------skG~gFVeF~~~e~A~kAl~~ 335 (872)
......+||.+.|||.+-.-+.|.+||+.+|.|+.|+|..- .+-+|+|||+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34457889999999999999999999999999999987321 144699999999999999998
Q ss_pred hCCc
Q 002874 336 LNRS 339 (872)
Q Consensus 336 LnG~ 339 (872)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 8644
No 158
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=96.23 E-value=0.0027 Score=70.90 Aligned_cols=74 Identities=19% Similarity=0.399 Sum_probs=60.7
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHhhcCCceeeEEEee-ecccccce-eEEEEEeccChhHHHHHHHHhcCCcccCC
Q 002874 710 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLP-IDFKNKCN-VGYAFINMVSPSHIISFYEAFNGKKWEKF 784 (872)
Q Consensus 710 d~rTTvMirNIPnk~t~~~L~~~id~~~~~~ydf~Ylp-~df~~~~n-~gyaFinf~~~~~~~~f~~~f~g~~w~~~ 784 (872)
+....|.||++|+++|.+.|++.||- +...+.|.|+- -|+....+ .+.|||||..+.++..|...|+|+..=..
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 34568999999999999999999999 88888888765 55543322 55599999999999999999999876543
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.14 E-value=0.012 Score=48.42 Aligned_cols=52 Identities=17% Similarity=0.427 Sum_probs=43.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHH
Q 002874 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAM 248 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai 248 (872)
+.|-|.+.+.+..+ +++..|..||+|..+... ....+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 67889999876664 455699999999999764 56779999999999999985
No 160
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.07 E-value=0.011 Score=62.91 Aligned_cols=89 Identities=26% Similarity=0.369 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCcccccceeeeeecCCCCCCCCccccccceeeeccCCccchhhHhhhhcccCCeEEE----EeCCCCcc
Q 002874 242 RAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI----RETPHKRH 317 (872)
Q Consensus 242 e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~v----ri~~~skG 317 (872)
.-|+.|..+|++....++.|.|.|+. ...|+|.||..-++.+.|.+.|+.||.|... +..++..+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~-----------~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAM-----------HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeec-----------cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 34777888899999999999999984 2569999999999999999999999987653 33456677
Q ss_pred EEEEEECCHHHHHHHHHHhCCcee
Q 002874 318 HKFIEFYDVRAAEAALRALNRSDI 341 (872)
Q Consensus 318 ~gFVeF~~~e~A~kAl~~LnG~~l 341 (872)
-++|+|...-.|.+|++.+.-.-|
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred cchhhhhcchhHHHHHHHhccCcc
Confidence 899999999999999998754333
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.99 E-value=0.012 Score=48.44 Aligned_cols=52 Identities=17% Similarity=0.377 Sum_probs=42.9
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHH
Q 002874 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAAL 333 (872)
Q Consensus 280 ~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl 333 (872)
+.|.|.+.+.+..+. +...|..||+|..+.+. ......+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 457888888776655 55588899999999986 44678999999999999985
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.97 E-value=0.021 Score=53.30 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=52.6
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEE------------eCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcE
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR------------ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR 345 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vr------------i~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~ 345 (872)
....|.|.+.|+..+ ..+.+.|++||+|.+.. -.+....+.-|+|+++.+|++||+ -||..|.|..
T Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 345689999998854 55778899999998885 123456789999999999999998 6999999864
Q ss_pred -EEEEecC
Q 002874 346 -IKLEPSR 352 (872)
Q Consensus 346 -L~V~~s~ 352 (872)
+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4466663
No 163
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.88 E-value=0.019 Score=67.81 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=61.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCe----EEEE-eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002874 194 SRTLFVRNINSNVEDLELRSLFEQYGDI----RTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I----~~v~-~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
.+.|-+.|+|++++.+||.++|..|-.+ ..-+ ..+.-.|-|.|.|++.++|++|...|+++.|..+++++.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 3489999999999999999999999543 2221 456778899999999999999999999999999998875
No 164
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.56 E-value=0.0088 Score=63.50 Aligned_cols=69 Identities=20% Similarity=0.431 Sum_probs=58.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCC-------------ccc----EEEEEeCCHHHHHHHHHHhcCc
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK-------------HRG----FVMISYYDIRAARTAMRALQNK 254 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~-------------srG----~AFVeF~~~e~A~~Ai~~Lng~ 254 (872)
+..-.||+.+||+.++..-|+++|++||.|-+|++.+. +++ -++|+|.+.+.|.++...||+.
T Consensus 72 rk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 72 RKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred ccceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 35679999999999999999999999999999984221 111 2789999999999999999999
Q ss_pred ccccce
Q 002874 255 PLRRRK 260 (872)
Q Consensus 255 ~l~gr~ 260 (872)
.|.|++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 998864
No 165
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.49 E-value=0.01 Score=65.67 Aligned_cols=78 Identities=24% Similarity=0.322 Sum_probs=68.6
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEE-------------EeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCc
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI-------------RETPHKRHHKFIEFYDVRAAEAALRALNRSDINGK 344 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~v-------------ri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr 344 (872)
...+|||-+|+..+++++|.++|.++|.|+.= +.+...++-|.|.|.|...|+.|+.-++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 35689999999999999999999999988653 23456788999999999999999999999999999
Q ss_pred EEEEEecCCCc
Q 002874 345 RIKLEPSRPGG 355 (872)
Q Consensus 345 ~L~V~~s~p~~ 355 (872)
+|+|.++..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999887654
No 166
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.42 E-value=0.03 Score=65.05 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=58.4
Q ss_pred ccccceeeeccCCccc------hhhHhhhhcccCCeEEEEe----CCCCccEEEEEECCHHHHHHHHHHhCCceeC-CcE
Q 002874 277 VNQGTLVVFNLDASVS------NDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN-GKR 345 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~t------eedLre~Fs~fG~V~~vri----~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~-Gr~ 345 (872)
.....|+|.|+|---. ..-|.++|+++|+|..+.+ .+..+||.|++|.+.++|+.|++.|||+.|+ .|+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3456788999885321 3346789999999988754 3567999999999999999999999999886 577
Q ss_pred EEEEe
Q 002874 346 IKLEP 350 (872)
Q Consensus 346 L~V~~ 350 (872)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 77654
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.36 E-value=0.036 Score=51.73 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=53.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE------------eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccce
Q 002874 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY------------TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 260 (872)
Q Consensus 193 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~------------~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~ 260 (872)
..+.|.|=+.|+. ....|.+.|++||+|.+.. ..........|+|.++.+|++|+. .||+.+.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4577999999987 6678889999999998875 123456789999999999999998 7999998754
Q ss_pred -eeeeec
Q 002874 261 -LDIHFS 266 (872)
Q Consensus 261 -L~V~~a 266 (872)
+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 446665
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.30 E-value=0.0072 Score=64.14 Aligned_cols=68 Identities=28% Similarity=0.469 Sum_probs=58.7
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCC-------------c--c--EEEEEECCHHHHHHHHHHhCCce
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHK-------------R--H--HKFIEFYDVRAAEAALRALNRSD 340 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~s-------------k--G--~gFVeF~~~e~A~kAl~~LnG~~ 340 (872)
..+.||+++||+......|+++|+.||.|-.|.+.+.. . . -|.|||.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 46789999999999999999999999999998664321 1 1 28899999999999999999999
Q ss_pred eCCcE
Q 002874 341 INGKR 345 (872)
Q Consensus 341 l~Gr~ 345 (872)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99974
No 169
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.26 E-value=0.14 Score=48.57 Aligned_cols=85 Identities=20% Similarity=0.308 Sum_probs=66.6
Q ss_pred cceeEEeecCCCCCCHHHHHHHHhhcCCceeeEEEeeecccccceeEEEEEeccChhHHHHHHHHhcCCcccCCCCccEE
Q 002874 711 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 790 (872)
Q Consensus 711 ~rTTvMirNIPnk~t~~~L~~~id~~~~~~ydf~Ylp~df~~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~s~k~~ 790 (872)
.+|+|-+=-+|+.++..+++-.+-+.+.....-+.+.-|.. -|.-=+-|-|.++++|..||+.|||++.+..-. -+|
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp-E~C 87 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP-ETC 87 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC-cee
Confidence 34666666899999998777777777777777666666643 466669999999999999999999999887765 459
Q ss_pred EEEe-eecc
Q 002874 791 SLAY-ARIQ 798 (872)
Q Consensus 791 ~v~~-A~iQ 798 (872)
.|.| .+||
T Consensus 88 hvvfV~~Ve 96 (110)
T PF07576_consen 88 HVVFVKSVE 96 (110)
T ss_pred EEEEEEEEE
Confidence 9999 4555
No 170
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.24 E-value=0.016 Score=64.19 Aligned_cols=77 Identities=21% Similarity=0.272 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-------------eCCCcccEEEEEeCCHHHHHHHHHHhcCcccc
Q 002874 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-------------TACKHRGFVMISYYDIRAARTAMRALQNKPLR 257 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-------------~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~ 257 (872)
.....+|||-+||..+++.+|.++|.++|.|..=+ .+...||-|.|.|.+...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44567999999999999999999999999886422 35678999999999999999999999999999
Q ss_pred cceeeeeecC
Q 002874 258 RRKLDIHFSI 267 (872)
Q Consensus 258 gr~L~V~~a~ 267 (872)
+.+|+|..+.
T Consensus 143 gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 GNTIKVSLAE 152 (351)
T ss_pred CCCchhhhhh
Confidence 9888887764
No 171
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.18 E-value=0.0078 Score=72.96 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=89.1
Q ss_pred ccccceeeeccCCccchhhHhhhhcccCCeEEEEeCC----CCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec-
Q 002874 277 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP----HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS- 351 (872)
Q Consensus 277 ~~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~----~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s- 351 (872)
..+.|||++||+..+++.+|+..|..+|.|.+|++.. ..--|+||.|.+...+-.|...+.+..|..-.+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 3467999999999999999999999999999998732 22358999999999999999999999887667777777
Q ss_pred -CCCcccchhhhcCChhccHHHHHHhhhccCC
Q 002874 352 -RPGGARRNLMQQLNQELEQDEARGFRHQVGS 382 (872)
Q Consensus 352 -~p~~~r~~~v~ql~~~~~q~~~~~~f~~~Gs 382 (872)
.....++.+++.+..+.....+...|..+|-
T Consensus 450 ~kst~ttr~~sgglg~w~p~~~l~r~fd~fGp 481 (975)
T KOG0112|consen 450 PKSTPTTRLQSGGLGPWSPVSRLNREFDRFGP 481 (975)
T ss_pred cccccceeeccCCCCCCChHHHHHHHhhccCc
Confidence 4445566688888888889999999998884
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.95 E-value=0.065 Score=53.05 Aligned_cols=74 Identities=32% Similarity=0.424 Sum_probs=53.1
Q ss_pred cccceeeeccCCc-----cch----hhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEE
Q 002874 278 NQGTLVVFNLDAS-----VSN----DDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKL 348 (872)
Q Consensus 278 ~~~tLfV~NLp~~-----~te----edLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V 348 (872)
...||.|.=+.+. .-+ .+|-+.|..||+|.-+|+.. +.-.|+|.+-+.|.+|+. |+|..+.|+.|+|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 4567777655511 222 36788899999999998864 347999999999999998 9999999999999
Q ss_pred EecCCCc
Q 002874 349 EPSRPGG 355 (872)
Q Consensus 349 ~~s~p~~ 355 (872)
++..|.-
T Consensus 102 ~LKtpdW 108 (146)
T PF08952_consen 102 RLKTPDW 108 (146)
T ss_dssp EE-----
T ss_pred EeCCccH
Confidence 9987753
No 173
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.93 E-value=0.011 Score=62.84 Aligned_cols=60 Identities=32% Similarity=0.427 Sum_probs=49.9
Q ss_pred hhHhhhhc-ccCCeEEEEeC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002874 294 DDLRQIFG-AYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 294 edLre~Fs-~fG~V~~vri~----~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
++|...|+ +||+|+++.+. .+-.|-++|.|...++|++|+..||+..+.|++|..+++.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45555566 89999988552 23468899999999999999999999999999999988753
No 174
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.86 E-value=0.087 Score=60.03 Aligned_cols=81 Identities=28% Similarity=0.363 Sum_probs=70.7
Q ss_pred ceeEEeecCCCCCCHHHHHHHHhhcCCceeeEEEeeecccccceeEEEEEeccChhHHHHHHHHhcCCcccCCCCccEEE
Q 002874 712 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 791 (872)
Q Consensus 712 rTTvMirNIPnk~t~~~L~~~id~~~~~~ydf~Ylp~df~~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~s~k~~~ 791 (872)
-|+|-|=-||+.+|.-+|+..+.....---|+--++ | .--|---+-|-|.+..+|..||+.|||+.+...-.+ +|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR-d--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e-~Ch 149 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR-D--GMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE-VCH 149 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee-c--CCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc-cee
Confidence 588999999999999999999998888888888888 3 444555599999999999999999999998887666 999
Q ss_pred EEeee
Q 002874 792 LAYAR 796 (872)
Q Consensus 792 v~~A~ 796 (872)
|-|+.
T Consensus 150 ll~V~ 154 (493)
T KOG0804|consen 150 LLYVD 154 (493)
T ss_pred EEEEE
Confidence 99964
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.71 E-value=0.083 Score=61.53 Aligned_cols=73 Identities=19% Similarity=0.327 Sum_probs=57.1
Q ss_pred CCCcEEEEcCCCCCCC--H----HHHHHHhhccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccc-cce
Q 002874 192 HPSRTLFVRNINSNVE--D----LELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRK 260 (872)
Q Consensus 192 ~~srtLfV~NLP~~vt--e----eeLr~lFs~fG~I~~v~~----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~-gr~ 260 (872)
.-+..|+|-|+|---. . .-|..+|+++|+|..++. .+..+||.|++|.+.++|+.|++.|+|+.|. ...
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3467899999984322 2 235689999999998873 4668999999999999999999999999885 445
Q ss_pred eeee
Q 002874 261 LDIH 264 (872)
Q Consensus 261 L~V~ 264 (872)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 5553
No 176
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.66 E-value=0.32 Score=56.47 Aligned_cols=149 Identities=17% Similarity=0.151 Sum_probs=91.0
Q ss_pred ccCCCCcchhHHHhhcccccccccCCCccccccc-cccCCCC---cEEEEecChhhHHHhhhhhhcccCCcCCCcccccc
Q 002874 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGG---GMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPI 176 (872)
Q Consensus 101 iwNlLp~~~dav~s~vadel~l~klfsd~~diee-dlfss~G---gv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l 176 (872)
+|-+.+|-+++.+.....++|--+.-..... +. ..+-.+| .|++.|+.+.+...-+..-.+.+....-.+.....
T Consensus 264 vGGlp~dise~~i~~~F~~FGs~~VdWP~k~-~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~~~ 342 (520)
T KOG0129|consen 264 VGGLPWDITEAQINASFGQFGSVKVDWPGKA-NSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSPTI 342 (520)
T ss_pred ecCCCccccHHHHHhhcccccceEeecCCCc-cccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEecCcc
Confidence 6777777777788777777776552222111 22 3444455 68999987554333222222111111110111111
Q ss_pred CCC----------CCcccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEe--C---CCcccEEEEEeCC
Q 002874 177 SNG----------VGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFE-QYGDIRTLYT--A---CKHRGFVMISYYD 240 (872)
Q Consensus 177 ~n~----------~~~~~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs-~fG~I~~v~~--~---~~srG~AFVeF~~ 240 (872)
... .....-+....-.+.+||||++||.-++.+||..+|+ -||.|..+-+ . +-.+|-|=|.|.+
T Consensus 343 k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsn 422 (520)
T KOG0129|consen 343 KDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSN 422 (520)
T ss_pred cccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecc
Confidence 100 0111122334456789999999999999999999999 8999987763 2 2367899999999
Q ss_pred HHHHHHHHHH
Q 002874 241 IRAARTAMRA 250 (872)
Q Consensus 241 ~e~A~~Ai~~ 250 (872)
..+-.+||.+
T Consensus 423 qqsYi~AIsa 432 (520)
T KOG0129|consen 423 QQAYIKAISA 432 (520)
T ss_pred cHHHHHHHhh
Confidence 9999999984
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.56 E-value=0.058 Score=58.29 Aligned_cols=61 Identities=23% Similarity=0.301 Sum_probs=49.9
Q ss_pred hhhHhhhhcccCCeEEEEeC--C-C---CccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCC
Q 002874 293 NDDLRQIFGAYGEVKEIRET--P-H---KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 353 (872)
Q Consensus 293 eedLre~Fs~fG~V~~vri~--~-~---skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p 353 (872)
++++++.+++||.|..|-+. + . ..--.||+|...++|.+|+-.|||+.|+|+.+...|..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 57789999999999887541 1 1 122379999999999999999999999999999887643
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.47 E-value=0.041 Score=58.67 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=48.1
Q ss_pred HHHHHHhh-ccCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecC
Q 002874 209 LELRSLFE-QYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 267 (872)
Q Consensus 209 eeLr~lFs-~fG~I~~v~~----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 267 (872)
++|...|+ +||+|+.+.+ ...-.|-+||.|...++|++|+..|++..+.|++|..++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444445 9999998853 22356889999999999999999999999999999999873
No 179
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.69 E-value=0.42 Score=47.10 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=57.8
Q ss_pred CCCCCCcEEEEcCCCCCC----CHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeee
Q 002874 189 YGEHPSRTLFVRNINSNV----EDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 264 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~v----teeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~ 264 (872)
..+.+-.||.|+=|..++ +...+...++.||+|.+|... .+-.|.|.|.|..+|-+|+.+++. ..-|..+++.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c--GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC--GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec--CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 456778899997666554 334456677899999999654 466899999999999999998876 5567777777
Q ss_pred ec
Q 002874 265 FS 266 (872)
Q Consensus 265 ~a 266 (872)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 74
No 180
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.27 E-value=0.39 Score=47.34 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=57.2
Q ss_pred cccccceeeeccCCcc----chhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002874 276 DVNQGTLVVFNLDASV----SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 276 ~~~~~tLfV~NLp~~~----teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
+..-.||+|+=|..++ +...+....+.||.|.+|...| +.-|.|.|+|..+|.+|+.+++. ..-|..+++.|-
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 3445788887655554 3344555667899999998865 44699999999999999999875 677889999886
Q ss_pred CC
Q 002874 352 RP 353 (872)
Q Consensus 352 ~p 353 (872)
++
T Consensus 160 qr 161 (166)
T PF15023_consen 160 QR 161 (166)
T ss_pred cc
Confidence 54
No 181
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.72 E-value=0.28 Score=57.21 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=55.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC--cccccceeeee
Q 002874 191 EHPSRTLFVRNINSNVEDLELRSLFEQ--YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIH 264 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~--fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng--~~l~gr~L~V~ 264 (872)
.+..|.|+++-||..+.+|+++.||.. +-++.+|... ...--||.|++..||+.|.+.|.. +.|.|++|...
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa--~N~nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA--HNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee--ecCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 344578899999999999999999974 7778888632 222358999999999999998865 34677766543
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=91.66 E-value=0.48 Score=47.04 Aligned_cols=74 Identities=24% Similarity=0.377 Sum_probs=52.8
Q ss_pred CCCcEEEEcCCC-----C-CCCH---HHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002874 192 HPSRTLFVRNIN-----S-NVED---LELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 192 ~~srtLfV~NLP-----~-~vte---eeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
.++.||.|.=+. . ..++ .+|.+.|..||+|.-++.. .+.-+|.|.+-+.|-+|+. ++|..+.|+.|.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 456788887665 1 2222 3677889999998877643 3567999999999999998 999999999999
Q ss_pred eeecCCC
Q 002874 263 IHFSIPK 269 (872)
Q Consensus 263 V~~a~pk 269 (872)
|..-.|.
T Consensus 101 i~LKtpd 107 (146)
T PF08952_consen 101 IRLKTPD 107 (146)
T ss_dssp EEE----
T ss_pred EEeCCcc
Confidence 9876543
No 183
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=91.63 E-value=0.17 Score=55.90 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=58.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCC--eEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002874 194 SRTLFVRNINSNVEDLELRSLFEQYGD--IRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~--I~~v~-----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
.-.+||+||-+.+|++||.+.....|- +.+++ ..+.+||||+|...+..+.++-|+.|-.+.|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 468999999999999999998887663 33333 56889999999999999999999999888888865444
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.15 E-value=0.12 Score=60.49 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=63.1
Q ss_pred cccceeeeccCCccchhhHhhhhc-ccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCcee---CCcEEEEEecCC
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFG-AYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI---NGKRIKLEPSRP 353 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs-~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l---~Gr~L~V~~s~p 353 (872)
....|+|.||-.-.|.-+|++++. ..|.|.+..+. +-+.+|||.|.+.++|.+.+.+|||..+ +++.|.+.|...
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD-kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD-KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHH-HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 356899999999999999999999 45666666443 4467899999999999999999999865 578899988765
Q ss_pred C
Q 002874 354 G 354 (872)
Q Consensus 354 ~ 354 (872)
.
T Consensus 522 d 522 (718)
T KOG2416|consen 522 D 522 (718)
T ss_pred h
Confidence 4
No 185
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.94 E-value=0.4 Score=52.06 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=55.2
Q ss_pred CcEEEEcCC--CCCCC---HHHHHHHhhccCCeEEEEeC-----CCc-ccEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002874 194 SRTLFVRNI--NSNVE---DLELRSLFEQYGDIRTLYTA-----CKH-RGFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 194 srtLfV~NL--P~~vt---eeeLr~lFs~fG~I~~v~~~-----~~s-rG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
++.|..+|. +-.++ ++++++.+++||.|..|.+. ... .--.||+|...++|.+|+-.|||+.|.|+.+.
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 344555554 23333 46788999999999988631 111 22479999999999999999999999999998
Q ss_pred eeecC
Q 002874 263 IHFSI 267 (872)
Q Consensus 263 V~~a~ 267 (872)
..|-.
T Consensus 361 A~Fyn 365 (378)
T KOG1996|consen 361 ACFYN 365 (378)
T ss_pred heecc
Confidence 87753
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.76 E-value=0.32 Score=49.96 Aligned_cols=78 Identities=8% Similarity=0.050 Sum_probs=50.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-cCCe---EEEE--e-----CCCcccEEEEEeCCHHHHHHHHHHhcCcccccc-
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQ-YGDI---RTLY--T-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 259 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~-fG~I---~~v~--~-----~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr- 259 (872)
....+|.|++||++.|++++.+.+.. ++.- ..+. . ....-.-|||.|.+.+++......++|..|.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 44579999999999999999998877 6665 2332 1 112234699999999999999999999887532
Q ss_pred ----eeeeeecCCC
Q 002874 260 ----KLDIHFSIPK 269 (872)
Q Consensus 260 ----~L~V~~a~pk 269 (872)
+..|++|.-+
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 4567777543
No 187
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=90.46 E-value=0.23 Score=58.29 Aligned_cols=77 Identities=21% Similarity=0.323 Sum_probs=61.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCccc---ccceeeee
Q 002874 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQ-YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL---RRRKLDIH 264 (872)
Q Consensus 189 ~~e~~srtLfV~NLP~~vteeeLr~lFs~-fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l---~gr~L~V~ 264 (872)
.....++.|+|.||=.-.|.-.|+.++.+ .|.|...++ .+-+..|||.|.+.++|...+.+|+|..+ +.+.|.+.
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 34567899999999999999999999994 556666643 35677899999999999999999998765 34555555
Q ss_pred ec
Q 002874 265 FS 266 (872)
Q Consensus 265 ~a 266 (872)
|.
T Consensus 518 f~ 519 (718)
T KOG2416|consen 518 FV 519 (718)
T ss_pred ec
Confidence 54
No 188
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.06 E-value=1.2 Score=40.24 Aligned_cols=56 Identities=13% Similarity=0.290 Sum_probs=43.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 002874 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 253 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng 253 (872)
+...+|. +|..+...||.++|+.||.|.--.+. ..-|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhcc
Confidence 4566677 99999999999999999998765553 45799999999999999998764
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.06 E-value=0.3 Score=56.17 Aligned_cols=73 Identities=22% Similarity=0.262 Sum_probs=58.5
Q ss_pred ceeeeccCCcc-chhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEecCCCc
Q 002874 281 TLVVFNLDASV-SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 281 tLfV~NLp~~~-teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s~p~~ 355 (872)
.|-+.-.++.. +.++|...|.+||+|..|.+.-. --.|.|+|.+..+|-+|.. ..+..|+++-|+|.|-.+..
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 34444444444 56889999999999999987533 4569999999999977765 68999999999999998865
No 190
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.01 E-value=1.3 Score=40.06 Aligned_cols=54 Identities=13% Similarity=0.273 Sum_probs=41.6
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhC
Q 002874 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN 337 (872)
Q Consensus 280 ~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~Ln 337 (872)
...+|. .|..+...||.++|++||.|.---+.. .-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d---TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND---TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECT---TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC---CcEEEEeecHHHHHHHHHHhc
Confidence 345555 999999999999999999987666643 359999999999999999886
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=88.67 E-value=0.76 Score=53.79 Aligned_cols=70 Identities=14% Similarity=0.230 Sum_probs=55.8
Q ss_pred cccceeeeccCCccchhhHhhhhcc--cCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCC--ceeCCcEEEEE
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGA--YGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR--SDINGKRIKLE 349 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~--fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG--~~l~Gr~L~V~ 349 (872)
..+.|.|+-|+..+..|+++.+|+. +-++.+|...-.. --||+|++..||+.|.+.|.. ++|.||.|...
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~--nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND--NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC--ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 3567889999999999999999985 6778888763222 369999999999999998854 47888876543
No 192
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.64 E-value=0.66 Score=48.05 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=45.6
Q ss_pred chhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhC--CceeCCcEEEEEecCCCc
Q 002874 292 SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN--RSDINGKRIKLEPSRPGG 355 (872)
Q Consensus 292 teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~Ln--G~~l~Gr~L~V~~s~p~~ 355 (872)
..+.|+++|..|+.+.....- ++-+-..|.|.+.++|.+|...|+ +..+.|..|+|-|+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 347899999999988777553 234458999999999999999999 999999999999996543
No 193
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=88.58 E-value=0.38 Score=53.26 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=60.1
Q ss_pred ccceeeeccCCccchhhHhhhhcccCC--eEEE-----EeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002874 279 QGTLVVFNLDASVSNDDLRQIFGAYGE--VKEI-----RETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 279 ~~tLfV~NLp~~~teedLre~Fs~fG~--V~~v-----ri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
.-++||+||-+.+|++||.+.....|- |.++ +..+.++|||+|...+..+.++-++.|-.++|.|..-.|-..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 347999999999999999998887662 3333 446789999999999999999999999999999976665444
No 194
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=87.38 E-value=1.7 Score=37.21 Aligned_cols=54 Identities=28% Similarity=0.363 Sum_probs=40.5
Q ss_pred ccceeeeccCCccchhhHhhhhccc----CCeEEEEeCCCCccEEEEEECCHHHHHHHHHHh
Q 002874 279 QGTLVVFNLDASVSNDDLRQIFGAY----GEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL 336 (872)
Q Consensus 279 ~~tLfV~NLp~~~teedLre~Fs~f----G~V~~vri~~~skG~gFVeF~~~e~A~kAl~~L 336 (872)
...|+|++++ +++.++|+.+|..| +. ..|.-... .-|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdD--tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDD--TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecC--CcEEEEECCHHHHHHHHHcC
Confidence 3579999986 58889999999998 43 23322212 24889999999999999865
No 195
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=87.21 E-value=1.4 Score=49.66 Aligned_cols=72 Identities=22% Similarity=0.482 Sum_probs=59.4
Q ss_pred cceeeeccCCccchhhHhhhhcccCCeEEEEeCCC--------CccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002874 280 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH--------KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 280 ~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~--------skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
+.|.|.||.++++.++++.+|.-.|+|.++++.+. ....|||.|.|...+..|.. |..+.+-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47999999999999999999999999999987542 24579999999999988866 7677777777777654
Q ss_pred C
Q 002874 352 R 352 (872)
Q Consensus 352 ~ 352 (872)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 196
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=84.40 E-value=4.3 Score=34.72 Aligned_cols=52 Identities=17% Similarity=0.385 Sum_probs=40.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc----CCeEEEE-eCCCcccEEEEEeCCHHHHHHHHHHh
Q 002874 195 RTLFVRNINSNVEDLELRSLFEQY----GDIRTLY-TACKHRGFVMISYYDIRAARTAMRAL 251 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~f----G~I~~v~-~~~~srG~AFVeF~~~e~A~~Ai~~L 251 (872)
.+|+|+++. +.+.++|+.+|..| ++. .|. +. ..-|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWId---DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWID---DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEec---CCcEEEEECCHHHHHHHHHcC
Confidence 589999996 68999999999999 542 222 22 234789999999999999864
No 197
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.04 E-value=1.8 Score=47.50 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=50.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccc
Q 002874 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 259 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr 259 (872)
+.=|-|-++|+.- -.-|..+|++||+|.+.. +.....+-+|.|.+..+|++|+. .+|+.|.|.
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv-~~~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHV-TPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeee-cCCCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 4556666777553 456788999999999984 55667799999999999999998 688887664
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=82.02 E-value=0.7 Score=51.32 Aligned_cols=77 Identities=14% Similarity=0.314 Sum_probs=60.3
Q ss_pred ccceeeeccCCccchhhHh---hhhcccCCeEEEEeCCCC--------ccEEEEEECCHHHHHHHHHHhCCceeCCcEEE
Q 002874 279 QGTLVVFNLDASVSNDDLR---QIFGAYGEVKEIRETPHK--------RHHKFIEFYDVRAAEAALRALNRSDINGKRIK 347 (872)
Q Consensus 279 ~~tLfV~NLp~~~teedLr---e~Fs~fG~V~~vri~~~s--------kG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~ 347 (872)
..-+||-+|+..+.++.+- +.|.+||.|..|.+.... ..-++|+|...++|..||...+|..++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3557888888877555543 678899999998664322 12389999999999999999999999999998
Q ss_pred EEecCCCc
Q 002874 348 LEPSRPGG 355 (872)
Q Consensus 348 V~~s~p~~ 355 (872)
..+...+-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 88877653
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=80.04 E-value=3.1 Score=43.21 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=45.2
Q ss_pred CHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhc--CcccccceeeeeecCC
Q 002874 207 EDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFSIP 268 (872)
Q Consensus 207 teeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Ln--g~~l~gr~L~V~~a~p 268 (872)
..+.|+++|..|+.+..+... ++-+-..|.|.+.++|.+|...|+ +..+.|..+++.|+.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 457899999999998887643 455567899999999999999999 8999999999998843
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.03 E-value=2.8 Score=46.05 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=54.1
Q ss_pred ccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcE-EEEEecC
Q 002874 279 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR-IKLEPSR 352 (872)
Q Consensus 279 ~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~-L~V~~s~ 352 (872)
..=|.|.++++.-.. -|..+|++||+|.+.... ....+-.|.|.++-+|++||. -||+.|+|.. |-|+.+.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 345777788776544 456789999999887543 666799999999999999998 6999999865 4455543
No 201
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=79.91 E-value=1.8 Score=46.61 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=51.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCcccEEEEEeCCHHHHHHHHHHhcCc
Q 002874 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNK 254 (872)
Q Consensus 195 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~----~~~~srG~AFVeF~~~e~A~~Ai~~Lng~ 254 (872)
..|||.||..-+..+.|.+-|+.||+|.... ...+..+-++|.|...-.|.+|.+.+.-.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccC
Confidence 7899999999999999999999999986532 35667788999999999999999977443
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=78.31 E-value=1.1 Score=49.90 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=59.2
Q ss_pred CcEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEeCCCc------c--cEEEEEeCCHHHHHHHHHHhcCcccccceee
Q 002874 194 SRTLFVRNINSNVEDLELR---SLFEQYGDIRTLYTACKH------R--GFVMISYYDIRAARTAMRALQNKPLRRRKLD 262 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr---~lFs~fG~I~~v~~~~~s------r--G~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~ 262 (872)
.+-+||-+|+..+.++++. +.|.+||.|..|.+.... . .-++|.|...++|..||...+|..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4667888888777666554 589999999998743211 1 1389999999999999999999999999988
Q ss_pred eeecCCC
Q 002874 263 IHFSIPK 269 (872)
Q Consensus 263 V~~a~pk 269 (872)
..+..++
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8776543
No 203
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=78.26 E-value=1.2 Score=51.35 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=63.3
Q ss_pred CCCCcEEEEcCCCCCC-CHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCC
Q 002874 191 EHPSRTLFVRNINSNV-EDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 269 (872)
Q Consensus 191 e~~srtLfV~NLP~~v-teeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 269 (872)
+...+.|-+.-+|... +-++|...|.+||+|..|.+... ---|.|+|.+..+|-+|.. ..+..|+++.|+|.|..+.
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 4556777777777765 46789999999999999976433 4568999999999988876 7899999999999998764
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=74.10 E-value=1.9 Score=52.94 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=59.9
Q ss_pred ceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCcee--CCcEEEEEecCCC
Q 002874 281 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI--NGKRIKLEPSRPG 354 (872)
Q Consensus 281 tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l--~Gr~L~V~~s~p~ 354 (872)
+.++.|..-.++-.-|..+|++||.|.+++.- +.-..+.|+|.+.+.|..|+++|+|+++ -|-+.+|.+++.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTL-RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheec-ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 44556666677888899999999999999752 2345799999999999999999999965 5788999998764
No 205
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=72.44 E-value=4.5 Score=39.67 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=74.4
Q ss_pred CCCHHHHHHHhhc-cCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeecCCCCCCCCccc--cccc
Q 002874 205 NVEDLELRSLFEQ-YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDV--NQGT 281 (872)
Q Consensus 205 ~vteeeLr~lFs~-fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~--~~~t 281 (872)
..+-..|...+.+ ++....+.+..-..++..++|.+.+++.++++ .....+.+..+.++.-.|...+..... ..--
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vW 106 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVW 106 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchh
Confidence 3556666655543 23222332223467899999999999999987 455667788888876665544433222 2234
Q ss_pred eeeeccCCc-cchhhHhhhhcccCCeEEEEeCCC
Q 002874 282 LVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETPH 314 (872)
Q Consensus 282 LfV~NLp~~-~teedLre~Fs~fG~V~~vri~~~ 314 (872)
|.|.|||.. .+++-|+++-+.+|++.+++....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 778899988 578889999999999999976533
No 206
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=71.77 E-value=26 Score=33.44 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=48.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCcccc
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLR 257 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~-I~~v~~---~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~ 257 (872)
+....+.+...|+-++.++|..+.+.+-. |..+++ ...++=.+.+.|.+.++|+...+.+||+.|.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 44556666666777777788777776654 444442 2335557999999999999999999999985
No 207
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=71.34 E-value=5.8 Score=36.35 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=45.5
Q ss_pred EEEEeCCHHHHHHHHHHhcC-cccccceeeeeecCCCCCCC-----CccccccceeeeccCCccchhhHhhhhc
Q 002874 234 VMISYYDIRAARTAMRALQN-KPLRRRKLDIHFSIPKDNPS-----EKDVNQGTLVVFNLDASVSNDDLRQIFG 301 (872)
Q Consensus 234 AFVeF~~~e~A~~Ai~~Lng-~~l~gr~L~V~~a~pk~~~~-----~~~~~~~tLfV~NLp~~~teedLre~Fs 301 (872)
|+|+|.+..-|++-++.-.. ..+.+..+.|....-..... ......++|.|.|||...++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999884332 23455555555432111111 1233567899999999999999997654
No 208
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=68.72 E-value=3.2 Score=51.09 Aligned_cols=72 Identities=21% Similarity=0.339 Sum_probs=58.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCccc--ccceeeeeecCCC
Q 002874 197 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL--RRRKLDIHFSIPK 269 (872)
Q Consensus 197 LfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l--~gr~L~V~~a~pk 269 (872)
.++.|.+-+.+-.-|..+|.+||.|.+.+.. +.-..|.|+|...+.|..|..+|+|+.+ -|.+.+|.++++-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTL-RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheec-ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3444555677888999999999999998742 4556899999999999999999999986 4888888887654
No 209
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=68.00 E-value=3.1 Score=50.01 Aligned_cols=69 Identities=22% Similarity=0.233 Sum_probs=61.4
Q ss_pred cccceeeeccCCccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEe
Q 002874 278 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 350 (872)
Q Consensus 278 ~~~tLfV~NLp~~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~ 350 (872)
...++||+|+...+.++-++.+...+|-|.++.... |||.+|..+..+.+|+..+.-..++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 456899999999999999999999999999886432 999999999999999999999999998877665
No 210
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=66.46 E-value=15 Score=32.06 Aligned_cols=58 Identities=24% Similarity=0.390 Sum_probs=34.0
Q ss_pred ccchhhHhhhhcccC-----CeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEEEec
Q 002874 290 SVSNDDLRQIFGAYG-----EVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 351 (872)
Q Consensus 290 ~~teedLre~Fs~fG-----~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V~~s 351 (872)
.++..+|..++...+ .|-.|++. ..|.||+-... .|..+++.|++..+.|++|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 456667777766553 45566764 46899998654 788999999999999999999865
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=59.26 E-value=28 Score=30.19 Aligned_cols=55 Identities=24% Similarity=0.390 Sum_probs=43.8
Q ss_pred ccchhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCcEEEE
Q 002874 290 SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKL 348 (872)
Q Consensus 290 ~~teedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr~L~V 348 (872)
.++-++++..+..|+- ..|+. ...| =||.|.+.++|+++.+..+|..+-+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678899999999974 44443 3345 389999999999999999999988877765
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=55.81 E-value=41 Score=29.20 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=43.2
Q ss_pred CCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 002874 205 NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 263 (872)
Q Consensus 205 ~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V 263 (872)
.++-++++..+..|+-.. |.. ...|| ||.|.+.++|++++...+++.+..-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-I~~--d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-IRD--DRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce-EEe--cCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 678899999999998543 322 23343 78999999999999999999887766654
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=55.21 E-value=7.7 Score=46.79 Aligned_cols=70 Identities=21% Similarity=0.224 Sum_probs=61.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeee
Q 002874 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 265 (872)
Q Consensus 192 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 265 (872)
.+.-++||+|+-..+..+-++.+...+|-|.++... -|+|..|.....+.+|+..+.-..++|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~----~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD----KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh----hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 467899999999999999999999999999888532 2999999999999999999988888888877654
No 214
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=50.94 E-value=59 Score=28.37 Aligned_cols=59 Identities=12% Similarity=0.219 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHhhccCC-----eEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccceeeeeec
Q 002874 204 SNVEDLELRSLFEQYGD-----IRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 266 (872)
Q Consensus 204 ~~vteeeLr~lFs~fG~-----I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 266 (872)
..++..+|..++..-+. |-.|.+. ..|+||+-.. +.|+.++..|++..++|+++.|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788888888877654 5566543 4588888655 4889999999999999999999864
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.69 E-value=60 Score=39.02 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=61.0
Q ss_pred CCCCCCCcEEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEe---------------CCC------------------
Q 002874 188 PYGEHPSRTLFVRNINSN-VEDLELRSLFEQY----GDIRTLYT---------------ACK------------------ 229 (872)
Q Consensus 188 ~~~e~~srtLfV~NLP~~-vteeeLr~lFs~f----G~I~~v~~---------------~~~------------------ 229 (872)
+.....+++|-|.|+.++ +..++|.-+|..| |.|.+|.+ .++
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 345677899999999976 8899999998866 47888752 222
Q ss_pred -------------------cccEEEEEeCCHHHHHHHHHHhcCcccc--cceeeeeec
Q 002874 230 -------------------HRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFS 266 (872)
Q Consensus 230 -------------------srG~AFVeF~~~e~A~~Ai~~Lng~~l~--gr~L~V~~a 266 (872)
..=||.|+|.+++.|......++|..|. +..|.+.|-
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0127999999999999999999999986 455666653
No 216
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=45.91 E-value=25 Score=36.33 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=50.2
Q ss_pred ceeeeccCCccc-----hhhHhhhhcccCCeEEEEeCCCCccEEEEEECCHHHHHHHHHHhCCceeCCc-EEEEEecCCC
Q 002874 281 TLVVFNLDASVS-----NDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGK-RIKLEPSRPG 354 (872)
Q Consensus 281 tLfV~NLp~~~t-----eedLre~Fs~fG~V~~vri~~~skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr-~L~V~~s~p~ 354 (872)
++.+.+++..+- ......+|..|-+..-.++- ++.++.-|-|.+.+.|..|...+++..|.|+ .+++-++++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 456666665432 22334555555443333322 2345677899999999999999999999998 8888888876
Q ss_pred c
Q 002874 355 G 355 (872)
Q Consensus 355 ~ 355 (872)
.
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 4
No 217
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.93 E-value=1.1e+02 Score=36.02 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=52.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCC-eEEE---EeCCCcccEEEEEeCCHHHHHHHHHHhcCcccc
Q 002874 194 SRTLFVRNINSNVEDLELRSLFEQYGD-IRTL---YTACKHRGFVMISYYDIRAARTAMRALQNKPLR 257 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~-I~~v---~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~ 257 (872)
++.|.|--+|..++-.||..+...+-. |..+ +..-+.+=.++|.|.+.++|......+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 899999999999999999998886643 3343 333345557999999999999999999999885
No 218
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=33.48 E-value=48 Score=36.75 Aligned_cols=146 Identities=17% Similarity=0.308 Sum_probs=91.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCC------------cccEEEEEeCCHHHHHHHHH----HhcC-
Q 002874 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK------------HRGFVMISYYDIRAARTAMR----ALQN- 253 (872)
Q Consensus 191 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~------------srG~AFVeF~~~e~A~~Ai~----~Lng- 253 (872)
+-.+|.|...|+..+++--++...|.+||+|++|++... ......+.|.+.+.|-.... .|..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999995322 24678999999988866443 2322
Q ss_pred -cccccceeeeeecCCC----C--CCCCc----------------cccccceeeeccCCccchhh-Hhhhh---cccCC-
Q 002874 254 -KPLRRRKLDIHFSIPK----D--NPSEK----------------DVNQGTLVVFNLDASVSNDD-LRQIF---GAYGE- 305 (872)
Q Consensus 254 -~~l~gr~L~V~~a~pk----~--~~~~~----------------~~~~~tLfV~NLp~~~teed-Lre~F---s~fG~- 305 (872)
+.++...|.+.|..-+ . +..+. ....+.|.|. +...+.+++ +.+.+ ..=+.
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~ 170 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNK 170 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCc
Confidence 3456677777765321 0 00000 0113445554 223332333 22222 11132
Q ss_pred ---eEEEEeCC-------CCccEEEEEECCHHHHHHHHHHhC
Q 002874 306 ---VKEIRETP-------HKRHHKFIEFYDVRAAEAALRALN 337 (872)
Q Consensus 306 ---V~~vri~~-------~skG~gFVeF~~~e~A~kAl~~Ln 337 (872)
+++|.+.. =++.||.+.|-+..-|...+..|.
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 34444311 136799999999999999998775
No 219
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.07 E-value=1e+02 Score=37.25 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=55.8
Q ss_pred cccceeeeccCCc-cchhhHhhhhccc----CCeEEEEeC---------------CC-----------------------
Q 002874 278 NQGTLVVFNLDAS-VSNDDLRQIFGAY----GEVKEIRET---------------PH----------------------- 314 (872)
Q Consensus 278 ~~~tLfV~NLp~~-~teedLre~Fs~f----G~V~~vri~---------------~~----------------------- 314 (872)
..++|-|.|++++ +.-++|.-+|..| |.|.+|.|. +.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4678999999987 6788898888866 588888541 11
Q ss_pred --------------CccEEEEEECCHHHHHHHHHHhCCceeCCc--EEEEEe
Q 002874 315 --------------KRHHKFIEFYDVRAAEAALRALNRSDINGK--RIKLEP 350 (872)
Q Consensus 315 --------------skG~gFVeF~~~e~A~kAl~~LnG~~l~Gr--~L~V~~ 350 (872)
.--||.|+|.+.+.|.+....++|.++... .|-+.|
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 013699999999999999999999998754 444444
No 220
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.11 E-value=20 Score=39.08 Aligned_cols=62 Identities=27% Similarity=0.474 Sum_probs=43.7
Q ss_pred cEEEEcCCCCC------------CCHHHHHHHhhccCCeEEEEe----------CCCc-----ccE---------EEEEe
Q 002874 195 RTLFVRNINSN------------VEDLELRSLFEQYGDIRTLYT----------ACKH-----RGF---------VMISY 238 (872)
Q Consensus 195 rtLfV~NLP~~------------vteeeLr~lFs~fG~I~~v~~----------~~~s-----rG~---------AFVeF 238 (872)
.||++.+||-. -+++-|+..|+.||.|+.|.+ +++. .|| |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 57888888742 357889999999999998862 2222 233 44666
Q ss_pred CCHHHHHHHHHHhcCccc
Q 002874 239 YDIRAARTAMRALQNKPL 256 (872)
Q Consensus 239 ~~~e~A~~Ai~~Lng~~l 256 (872)
....--..||.+|.|.++
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 666667778888887765
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.84 E-value=77 Score=36.47 Aligned_cols=133 Identities=17% Similarity=0.114 Sum_probs=0.0
Q ss_pred CCcchhHHHhhcccccccccCCCccccccc-cccCCCCcEEEEecChhhHHHhhhhhhcccCCcCCCccccccCCCCCcc
Q 002874 105 LPDDENDLLAGLVDDFDLRGLPSQLEDLED-DLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTV 183 (872)
Q Consensus 105 Lp~~~dav~s~vadel~l~klfsd~~diee-dlfss~Ggv~V~~d~~esa~~a~~k~~~~~~~~~ngv~~~~l~n~~~~~ 183 (872)
||.++.+-.+..-++.++...+.+-+|--+ ++. .+..+......+.+.|+.+... ..
T Consensus 323 ~~~~~~ee~d~ee~eed~~~s~~ed~e~~d~~lL------qe~tenl~K~kiqeeK~dy~~s----------------~~ 380 (528)
T KOG4483|consen 323 LFCNDPEELDKEESEEDLTMSVLEDWETADDDLL------QERTENLLKDKIQEEKKDYSMS----------------KA 380 (528)
T ss_pred CCCCChhhhhhhhccccccccccccccccCHHHH------HHHHHHhhhhhhhchhhhcccc----------------cC
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCccccccee
Q 002874 184 AGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 261 (872)
Q Consensus 184 ~g~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr~L 261 (872)
.........--+.|-|.++|.....+||...|+.|+. ..+++.=.-...||-.|.+...|..|+. |....++=|+|
T Consensus 381 p~~ll~e~dlpHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdthalaVFss~~~AaeaLt-~kh~~lKiRpL 456 (528)
T KOG4483|consen 381 PPPLLRESDLPHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDTHALAVFSSVNRAAEALT-LKHDWLKIRPL 456 (528)
T ss_pred CCCCCCcccccceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecceeEEeecchHHHHHHhh-ccCceEEeeeh
No 222
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=24.66 E-value=67 Score=35.40 Aligned_cols=48 Identities=10% Similarity=0.181 Sum_probs=37.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEeCCCcccEEEEEeCCHH
Q 002874 194 SRTLFVRNINSNVEDLELRSLFEQYGDI-RTLYTACKHRGFVMISYYDIR 242 (872)
Q Consensus 194 srtLfV~NLP~~vteeeLr~lFs~fG~I-~~v~~~~~srG~AFVeF~~~e 242 (872)
.+-|+|+||+.++-..||+..+.+-|-+ .++ .-.-+.|-||++|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~i-swkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSI-SWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeE-eeecCCcceeEecCCcc
Confidence 4569999999999999999999887753 233 22356788999998754
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=20.60 E-value=75 Score=32.99 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=51.9
Q ss_pred cEEEEcCCCCCCC-----HHHHHHHhhccCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCcccccc-eeeeeecCC
Q 002874 195 RTLFVRNINSNVE-----DLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDIHFSIP 268 (872)
Q Consensus 195 rtLfV~NLP~~vt-----eeeLr~lFs~fG~I~~v~~~~~srG~AFVeF~~~e~A~~Ai~~Lng~~l~gr-~L~V~~a~p 268 (872)
+++.+.+|+..+- ......+|.+|-+...... -++.+..-|.|.+++.|..|...++...|.|+ .++.-++.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 5677788876542 2233456666665444332 25667788999999999999999999999988 777777654
Done!