BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002876
(872 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 572 bits (1473), Expect = e-163, Method: Compositional matrix adjust.
Identities = 341/887 (38%), Positives = 504/887 (56%), Gaps = 39/887 (4%)
Query: 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
E+ IL S D + A++ L++ +NLP FL+ L+ L N +R AGL +
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 64 KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
KN+L +K+ K + QRWL++D++ + ++K+++L+TL + + S+ASQ VA +A E
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAE 120
Query: 124 LPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
+P QWPELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++Q
Sbjct: 121 IPVSQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
GM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEAT P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239
Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
LV I S YY+ + Y+ +F IT +A++ D + VALQ IEFWS+VCDEE+D+ E
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
+ + ++ K A WN A G CL L++
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLST 357
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
DDIVP V+PF++E+I +WR R+AA AFGSILEGP P +L PLV A+ L L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMP-TLIEL 416
Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
M+DP+ V+DTTAWT+GR+ E L + IN ++ L++ + P VA C
Sbjct: 417 MKDPSVVVRDTTAWTVGRICELLPEAA-----INDVYLAPLLQCLIEGLSAEPRVASNVC 471
Query: 479 GALYFLAQGF-------EDAISPSS-PLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530
A LA+ +D P++ L+ F+ IVQ LL T R D ++ LR++AYE+
Sbjct: 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531
Query: 531 LNEVVRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVI 588
L E+V+ S + P V + +IM L Q L E+ S+ +R + N++Q LLC LQ +
Sbjct: 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591
Query: 589 IQKLGSSEQTKYVFMQYADQMMGLFLRVF--AIRSATAHEEAMLAIGALAYATGQDFLKY 646
++K+ + +Q +D +M LR+F S E+A++A+ L G +FLKY
Sbjct: 592 LRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY 646
Query: 647 MPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLH 706
M F ++ +GL+N+ +YQVC VG+VGDLCRAL+ ILP+CD +M LL++L + +H
Sbjct: 647 MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNENVH 706
Query: 707 RSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNG 766
RSVKP I S FGDIALAIG F+KYL + LQ A++ V S D DM +Y N LR
Sbjct: 707 RSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKS--DFDMVDYLNELRES 764
Query: 767 ILEAFSGIFQGFKGS-----PKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGD 821
LEA++GI QG KG P L+ P IL F+D + ++D D V A G++GD
Sbjct: 765 CLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGD 824
Query: 822 LADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISK 868
L G + L++ + L E S + K A WA + K
Sbjct: 825 LCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRK 871
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 568 bits (1463), Expect = e-162, Method: Compositional matrix adjust.
Identities = 339/887 (38%), Positives = 502/887 (56%), Gaps = 39/887 (4%)
Query: 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
E+ IL S D + A++ L++ +NLP FL+ L+ L N +R AGL +
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 64 KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
KN+L +K+ K + QRWL++D++ + ++K+++L+TL + + S+ASQ VA +A E
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAE 120
Query: 124 LPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
+P QWPELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++Q
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
GM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEAT P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239
Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
LV I S YY+ + Y+ +F IT +A++ D + VALQ IEFWS+VCDEE+D+ E
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
+ + ++ K A WN A G CL L+A
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLAT 357
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
DDIVP V+PF++E+I +WR R+AA AFG ILEGP P +L PLV A+ L L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP-TLIEL 416
Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
M+DP+ V+DT AWT+GR+ E L + IN ++ L++ + P VA C
Sbjct: 417 MKDPSVVVRDTAAWTVGRICELLPEAA-----INDVYLAPLLQCLIEGLSAEPRVASNVC 471
Query: 479 GALYFLAQGF-------EDAISPSS-PLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530
A LA+ +D P++ L+ F+ IVQ LL T R D ++ LR++AYE+
Sbjct: 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531
Query: 531 LNEVVRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVI 588
L E+V+ S + P V + +IM L Q L E+ S+ +R + N++Q LLC LQ +
Sbjct: 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591
Query: 589 IQKLGSSEQTKYVFMQYADQMMGLFLRVF--AIRSATAHEEAMLAIGALAYATGQDFLKY 646
++K+ + +Q +D +M LR+F S E+A++A+ L G +FLKY
Sbjct: 592 LRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY 646
Query: 647 MPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLH 706
M F ++ +GL+N+ +YQVC VG+VGDLCRAL+ I+P+CD +M LL++L + +H
Sbjct: 647 MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVH 706
Query: 707 RSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNG 766
RSVKP I S FGDIALAIG F+KYL + LQ A++ V S D DM +Y N LR
Sbjct: 707 RSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKS--DYDMVDYLNELRES 764
Query: 767 ILEAFSGIFQGFKGS-----PKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGD 821
LEA++GI QG KG P L+ P IL F+D + ++D D V A G++GD
Sbjct: 765 CLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGD 824
Query: 822 LADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISK 868
L G + L++ + L E S + K A WA + K
Sbjct: 825 LCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRK 871
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 568 bits (1463), Expect = e-162, Method: Compositional matrix adjust.
Identities = 339/887 (38%), Positives = 501/887 (56%), Gaps = 39/887 (4%)
Query: 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
E+ IL S D + A++ L++ +NLP FL+ L+ L N +R AGL +
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 64 KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
KN+L +K+ K + QRWL++D++ + ++K+++L TL + + S+ASQ VA +A E
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAE 120
Query: 124 LPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
+P QWPELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++Q
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
GM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEAT P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239
Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
LV I S YY+ + Y+ +F IT +A++ D + VALQ IEFWS+VCDEE+D+ E
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
+ + ++ K A WN A G CL L+A
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLAT 357
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
DDIVP V+PF++E+I +WR R+AA AFG ILEGP P +L PLV A+ L L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP-TLIEL 416
Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
M+DP+ V+DT AWT+GR+ E L + IN ++ L++ + P VA C
Sbjct: 417 MKDPSVVVRDTAAWTVGRICELLPEAA-----INDVYLAPLLQCLIEGLSAEPRVASNVC 471
Query: 479 GALYFLAQGF-------EDAISPSS-PLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530
A LA+ +D P++ L+ F+ IVQ LL T R D ++ LR++AYE+
Sbjct: 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531
Query: 531 LNEVVRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVI 588
L E+V+ S + P V + +IM L Q L E+ S+ +R + N++Q LLC LQ +
Sbjct: 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591
Query: 589 IQKLGSSEQTKYVFMQYADQMMGLFLRVF--AIRSATAHEEAMLAIGALAYATGQDFLKY 646
++K+ + +Q +D +M LR+F S E+A++A+ L G +FLKY
Sbjct: 592 LRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY 646
Query: 647 MPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLH 706
M F ++ +GL+N+ +YQVC VG+VGDLCRAL+ I+P+CD +M LL++L + +H
Sbjct: 647 MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVH 706
Query: 707 RSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNG 766
RSVKP I S FGDIALAIG F+KYL + LQ A++ V S D DM +Y N LR
Sbjct: 707 RSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKS--DYDMVDYLNELRES 764
Query: 767 ILEAFSGIFQGFKGS-----PKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGD 821
LEA++GI QG KG P L+ P IL F+D + ++D D V A G++GD
Sbjct: 765 CLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGD 824
Query: 822 LADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISK 868
L G + L++ + L E S + K A WA + K
Sbjct: 825 LCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 496 bits (1277), Expect = e-140, Method: Compositional matrix adjust.
Identities = 295/761 (38%), Positives = 427/761 (56%), Gaps = 38/761 (4%)
Query: 130 PELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASE 187
PELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++QGM E
Sbjct: 2 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEE 60
Query: 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247
+N+V+LAAT AL N+L F +ANF + ER +IM+VVCEAT P+ ++R AA + LV I
Sbjct: 61 PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 120
Query: 248 STYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY--GGDFSG 304
S YY+ + Y+ +F IT +A++ D + VALQ IEFWS+VCDEE+D+ E +
Sbjct: 121 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 180
Query: 305 DSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVARTVGDDI 364
+ ++ K A WN A G CL L+A DDI
Sbjct: 181 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLATCCEDDI 238
Query: 365 VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNN 424
VP V+PF++E+I +WR R+AA AFG ILEGP P +L PLV A+ L LM+DP+
Sbjct: 239 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP-TLIELMKDPSV 297
Query: 425 HVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFL 484
V+DT AWT+GR+ E L + IN ++ L++ + P VA C A L
Sbjct: 298 VVRDTAAWTVGRICELLPEAA-----INDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSL 352
Query: 485 AQGF-------EDAISPSS-PLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVR 536
A+ +D P++ L+ F+ IVQ LL T R D ++ LR++AYE+L E+V+
Sbjct: 353 AEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 412
Query: 537 CSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGS 594
S + P V + +IM L Q L E+ S+ +R + N++Q LLC LQ +++K+
Sbjct: 413 NSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH 472
Query: 595 SEQTKYVFMQYADQMMGLFLRVF--AIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYK 652
+ +Q +D +M LR+F S E+A++A+ L G +FLKYM F
Sbjct: 473 QDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKP 527
Query: 653 YVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPP 712
++ +GL+N+ +YQVC VG+VGDLCRAL+ I+P+CD +M LL++L + +HRSVKP
Sbjct: 528 FLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQ 587
Query: 713 IFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFS 772
I S FGDIALAIG F+KYL + LQ A++ V S D DM +Y N LR LEA++
Sbjct: 588 ILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKS--DYDMVDYLNELRESCLEAYT 645
Query: 773 GIFQGFKGS-----PKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLG 827
GI QG KG P L+ P IL F+D + ++D D V A G++GDL G
Sbjct: 646 GIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFG 705
Query: 828 SNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISK 868
+ L++ + L E S + K A WA + K
Sbjct: 706 KDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRK 746
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 269/834 (32%), Positives = 428/834 (51%), Gaps = 38/834 (4%)
Query: 2 SAEVTQILLNA-QSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAG 60
+AE Q+L N+ S D +R +E LK+ N F + L+++ +E R LA
Sbjct: 3 TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAA 62
Query: 61 LILKNALDAKEQHRKFELVQRWLS-LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKV 119
L LKN L +K+ + + QRW++ + K QIK+ L L S + A+Q++A +
Sbjct: 63 LTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAI 122
Query: 120 AGIELPHKQWPELIGALLSNI-HQLPPHTKQATLETLGYICEEVSSDAVEQDHV---NKI 175
A IELPH WPEL+ ++ N + P + K+A+L LGY+CE S+D Q V N I
Sbjct: 123 ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCE--SADPQSQALVSSSNNI 180
Query: 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKI 235
L A+VQG ++E++ VRLAA AL ++L F + N + ER+Y+M+VVCEAT + ++++
Sbjct: 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240
Query: 236 RQAAFECLVAISSTYYEKLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDI 294
+ AAF CL I S YY + PY+ Q ++ +T ++ + VA +EFWS++C+EEIDI
Sbjct: 241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI 300
Query: 295 LEEYGGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLG 354
E F S + + F + WN++M+ G CL
Sbjct: 301 AYELA-QFP-QSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDD--WNVSMSAGACLQ 356
Query: 355 LVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFM 414
L A+ G+ I+ V+ FVE+NIT WR REAA AFGSI++GP + V+ AL +
Sbjct: 357 LFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416
Query: 415 LTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVA 474
L LM D + VK+TTAW +GR+ ++ I Q + ++ L ++D P VA
Sbjct: 417 LN-LMNDQSLQVKETTAWCIGRI-----ADSVAESIDPQQHLPGVVQACLIGLQDHPKVA 470
Query: 475 EKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534
+ L + +A +P SP+ F+ +V L+ +R D E R +A+ L +
Sbjct: 471 TNCSWTIINLVEQLAEA-TP-SPIYNFYPALVDGLIGAANRID-NEFNARASAFSALTTM 527
Query: 535 VRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVIIQKL 592
V +TD A + +M +L QT+ + +L+ ++ + E+Q + L +I+K
Sbjct: 528 VEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS 587
Query: 593 GSSEQTKYVFMQYADQMMGLFLRVFAIR-SATAHEEAMLAIGALAYATGQDFLKYMPEFY 651
SS + AD +MGLF R+ + SA ++ AI ALA + G+ F KY+ F
Sbjct: 588 PSSVEP------VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFS 641
Query: 652 KYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKP 711
Y+ L N D V VG + D+ +LE+ Y D +M L + +S+ R +KP
Sbjct: 642 PYLLKAL-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKP 700
Query: 712 PIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAF 771
+ S FGDIA IG +F YL M + +A + + +Y + +L+A+
Sbjct: 701 AVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTL--EALDYQIKVLEAVLDAY 758
Query: 772 SGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDM--DDVVTKTAIGVLGDLA 823
GI G P+ L PY I QF+ + + + +D ++ A+G++GD+A
Sbjct: 759 VGIVAGLHDKPEA--LFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIA 810
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 269/834 (32%), Positives = 428/834 (51%), Gaps = 38/834 (4%)
Query: 2 SAEVTQILLNA-QSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAG 60
+AE Q+L N+ S D +R +E LK+ N F + L+++ +E R LA
Sbjct: 3 TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAA 62
Query: 61 LILKNALDAKEQHRKFELVQRWLS-LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKV 119
L LKN L +K+ + + QRW++ + K QIK+ L L S + A+Q++A +
Sbjct: 63 LTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAI 122
Query: 120 AGIELPHKQWPELIGALLSNI-HQLPPHTKQATLETLGYICEEVSSDAVEQDHV---NKI 175
A IELPH WPEL+ ++ N + P + K+A+L LGY+CE S+D Q V N I
Sbjct: 123 ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCE--SADPQSQALVSSSNNI 180
Query: 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKI 235
L A+VQG ++E++ VRLAA AL ++L F + N + ER+Y+M+VVCEAT + ++++
Sbjct: 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240
Query: 236 RQAAFECLVAISSTYYEKLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDI 294
+ AAF CL I S YY + PY+ Q ++ +T ++ + VA +EFWS++C+EEIDI
Sbjct: 241 QAAAFGCLCKIMSLYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI 300
Query: 295 LEEYGGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLG 354
E F S + + F + WN++M+ G CL
Sbjct: 301 AYELA-QFP-QSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDD--WNVSMSAGACLQ 356
Query: 355 LVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFM 414
L A+ G+ I+ V+ FVE+NIT WR REAA AFGSI++GP + V+ AL +
Sbjct: 357 LFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416
Query: 415 LTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVA 474
L LM D + VK+TTAW +GR+ ++ I Q + ++ L ++D P VA
Sbjct: 417 LN-LMNDQSLQVKETTAWCIGRI-----ADSVAESIDPQQHLPGVVQACLIGLQDHPKVA 470
Query: 475 EKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534
+ L + +A +P SP+ F+ +V L+ +R D E R +A+ L +
Sbjct: 471 TNCSWTIINLVEQLAEA-TP-SPIYNFYPALVDGLIGAANRID-NEFNARASAFSALTTM 527
Query: 535 VRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVIIQKL 592
V +TD A + +M +L QT+ + +L+ ++ + E+Q + L +I+K
Sbjct: 528 VEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS 587
Query: 593 GSSEQTKYVFMQYADQMMGLFLRVFAIR-SATAHEEAMLAIGALAYATGQDFLKYMPEFY 651
SS + AD +MGLF R+ + SA ++ AI ALA + G+ F KY+ F
Sbjct: 588 PSSVEP------VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFS 641
Query: 652 KYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKP 711
Y+ L N D V VG + D+ +LE+ Y D +M L + +S+ R +KP
Sbjct: 642 PYLLKAL-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKP 700
Query: 712 PIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAF 771
+ S FGDIA IG +F YL M + +A + + +Y + +L+A+
Sbjct: 701 AVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTL--EALDYQIKVLEAVLDAY 758
Query: 772 SGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDM--DDVVTKTAIGVLGDLA 823
GI G P+ L PY I QF+ + + + +D ++ A+G++GD+A
Sbjct: 759 VGIVAGLHDKPEA--LFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIA 810
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 323 bits (828), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 191/493 (38%), Positives = 285/493 (57%), Gaps = 15/493 (3%)
Query: 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
E+ IL S D + A++ L++ +NLP FL+ L+ L N +R AGL +
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 64 KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
KN+L +K+ K + QRWL++D++ + ++K+++L+TL + + S+ASQ VA +A E
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAE 120
Query: 124 LPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
+P QWPELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++Q
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
GM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEAT P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239
Query: 242 CLVAISSTYYEKLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
LV I S YY+ + Y+ +F IT +A++ D + VALQ IEFWS+VCDEE+D+ E
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
+ + ++ K A WN A G CL L+A
Sbjct: 300 AAEQGRPPEHTSKFYAKGA--LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 357
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
DDIVP V+PF++E+I +WR R+AA AFG ILEGP P +L PLV A+ L L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP-TLIEL 416
Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
M+DP+ V+DT AWT+GR+ E L + IN ++ L++ + P VA C
Sbjct: 417 MKDPSVVVRDTAAWTVGRICELLPEAA-----INDVYLAPLLQCLIEGLSAEPRVASNVC 471
Query: 479 GALYFLAQGFEDA 491
A LA+ +A
Sbjct: 472 WAFSSLAEAAYEA 484
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 315 bits (806), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 180/443 (40%), Positives = 266/443 (60%), Gaps = 10/443 (2%)
Query: 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
E+ IL S D + A++ L++ +NLP FL+ L+ L N +R AGL +
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 64 KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
KN+L +K+ K + QRWL++D++ + ++K+++L+TL + + S+ASQ VA +A E
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAE 120
Query: 124 LPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
+P QWPELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++Q
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
GM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEAT P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239
Query: 242 CLVAISSTYYEKLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
LV I S YY+ + Y+ +F IT +A++ D + VALQ IEFWS+VCDEE+D+ E
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
+ + ++ K A WN A G CL L+A
Sbjct: 300 AAEQGRPPEHTSKFYAKGA--LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 357
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
DDIVP V+PF++E+I +WR R+AA AFG ILEGP P +L PLV A+ L L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP-TLIEL 416
Query: 419 MQDPNNHVKDTTAWTLGRMFEFL 441
M+DP+ V+DT AWT+GR+ E L
Sbjct: 417 MKDPSVVVRDTAAWTVGRICELL 439
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 314 bits (804), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 180/443 (40%), Positives = 265/443 (59%), Gaps = 10/443 (2%)
Query: 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
E+ IL S D + A++ L++ +NLP FL+ L+ L N +R AGL +
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 64 KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
KN+L +K+ K + QRWL++D++ + ++K+++L TL + + S+ASQ VA +A E
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAE 120
Query: 124 LPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
+P QWPELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++Q
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
GM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEAT P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239
Query: 242 CLVAISSTYYEKLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
LV I S YY+ + Y+ +F IT +A++ D + VALQ IEFWS+VCDEE+D+ E
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
+ + ++ K A WN A G CL L+A
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLAT 357
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
DDIVP V+PF++E+I +WR R+AA AFG ILEGP P +L PLV A+ L L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP-TLIEL 416
Query: 419 MQDPNNHVKDTTAWTLGRMFEFL 441
M+DP+ V+DT AWT+GR+ E L
Sbjct: 417 MKDPSVVVRDTAAWTVGRICELL 439
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 306 bits (785), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 178/443 (40%), Positives = 260/443 (58%), Gaps = 10/443 (2%)
Query: 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
E+ IL S D + A++ L++ +NLP FL+ L+ L N +R AGL +
Sbjct: 8 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 67
Query: 64 KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
KN+L +K+ K + QRWL++D++ + ++K+++L+TL + + S+ASQ VA +A E
Sbjct: 68 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAE 126
Query: 124 LPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
+P QWPELI L++N+ H K++TLE +GYIC+++ + + QD N+ILTA++Q
Sbjct: 127 IPVSQWPELIPQLVANVTNPNSTEHXKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 185
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
G E +N+V+LAAT AL N+L F +ANF + ER +I +VVCEAT P+ ++R AA +
Sbjct: 186 GXRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIXQVVCEATQCPDTRVRVAALQ 245
Query: 242 CLVAISSTYYEKLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
LV I S YY+ Y +F IT +A + D + VALQ IEFWS+VCDEE D+ E
Sbjct: 246 NLVKIXSLYYQYXETYXGPALFAITIEAXKSDIDEVALQGIEFWSNVCDEEXDLAIEASE 305
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
+ + ++ K A WN A G CL L++
Sbjct: 306 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLXLLST 363
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
DDIVP V+PF++E+I +WR R+AA AFGSILEGP P +L PLV I L L
Sbjct: 364 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVXAFGSILEGPEPNQLKPLV-IQAXPTLIEL 422
Query: 419 MQDPNNHVKDTTAWTLGRMFEFL 441
+DP+ V+DTTAWT+GR+ E L
Sbjct: 423 XKDPSVVVRDTTAWTVGRICELL 445
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 118/561 (21%), Positives = 233/561 (41%), Gaps = 56/561 (9%)
Query: 12 AQSVDGTVRKQAEESLKQY-QEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAK 70
+QS D T+++ ++ L+Q Q + +L+ + +L ++++P +R L+GLILKN + A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLILKNNVKAH 79
Query: 71 EQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGI-ELPHKQW 129
Q + + V IKS L + + R+T ++ +A EL + W
Sbjct: 80 FQ-----------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL--QNW 126
Query: 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNA--SE 187
P+L+ L S + +T + L ICE+ S++ ++ D +++ L ++
Sbjct: 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIMIPKFLQFFKH 185
Query: 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247
S+ +R A A N ++ + + D + + E ++R+ LV +
Sbjct: 186 SSPKIRSHAV-ACVNQFIISRTQ-ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243
Query: 248 STYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEI--DILEEY------- 298
++L P++ +I + ++ +E VAL+A EFW ++ ++ I D+L +
Sbjct: 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPV 303
Query: 299 ---GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGL 355
G + SDI WN+ L +
Sbjct: 304 LVNGMKY---SDIDIILLKGDVEEDETIPDSEQDIGGSGGSGDTISDWNLRKCSAAALDV 360
Query: 356 VARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFML 415
+A D+++P ++P ++E + EW +E+ G+I EG + ++P + + ++
Sbjct: 361 LANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEG-CMQGMIPYLPELIPHLI 419
Query: 416 TALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET---PIINQGNCQQIISVLLQSMKDVPN 472
L D V+ T WTL R ++ +T P++ +++ +L S K
Sbjct: 420 QCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT-----ELLKRILDSNK---R 470
Query: 473 VAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLN 532
V E AC A L + + L P+ I+ L+ + + A TL
Sbjct: 471 VQEAACSAFATLEE------EACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA 524
Query: 533 EVVRCSTDETAPMVMQLVPLI 553
+ V ++ + M + PLI
Sbjct: 525 DSVGHHLNKPEYIQMLMPPLI 545
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 117/558 (20%), Positives = 232/558 (41%), Gaps = 63/558 (11%)
Query: 12 AQSVDGTVRKQAEESLKQY-QEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAK 70
+QS D T+++ ++ L+Q Q + +L+ + +L ++++P +R L+GLILKN + A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLILKNNVKAH 79
Query: 71 EQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGI-ELPHKQW 129
Q + + V IKS L + + R+T ++ +A EL + W
Sbjct: 80 FQ-----------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL--QNW 126
Query: 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNA--SE 187
P+L+ L S + +T + L ICE+ S++ ++ D +++ L ++
Sbjct: 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIMIPKFLQFFKH 185
Query: 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247
S+ +R A A N ++ + + D + + E ++R+ LV +
Sbjct: 186 SSPKIRSHAV-ACVNQFIISRTQ-ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243
Query: 248 STYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEI--DILEEY------- 298
++L P++ +I + ++ +E VAL+A EFW ++ ++ I D+L +
Sbjct: 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPV 303
Query: 299 --GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLV 356
G D DI WN+ L ++
Sbjct: 304 LVNGMKYSDIDI---------------ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVL 348
Query: 357 ARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLT 416
A D+++P ++P ++E + EW +E+ G+I EG + ++P + + ++
Sbjct: 349 ANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEG-CMQGMIPYLPELIPHLIQ 407
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDV-PNVAE 475
L D V+ T WTL R ++ +T + + +++ LL+ + D V E
Sbjct: 408 CL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYL------KPLMTELLKRILDSNKRVQE 460
Query: 476 KACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVV 535
AC A L + + L P+ I+ L+ + + A TL + V
Sbjct: 461 AACSAFATLEE------EACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 514
Query: 536 RCSTDETAPMVMQLVPLI 553
++ + M + PLI
Sbjct: 515 GHHLNKPEYIQMLMPPLI 532
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 120/583 (20%), Positives = 236/583 (40%), Gaps = 75/583 (12%)
Query: 12 AQSVDGTVRKQAEESLKQY-QEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAK 70
+QS D T+++ ++ L+Q Q + +L+ + +L ++++P +R L+GLILKN + A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLILKNNVKAH 79
Query: 71 EQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGI-ELPHKQW 129
Q + + V IKS L + + R+T ++ +A EL + W
Sbjct: 80 FQ-----------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL--QNW 126
Query: 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNA--SE 187
P+L+ L S + +T + L ICE+ S++ ++ D +++ L ++
Sbjct: 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIMIPKFLQFFKH 185
Query: 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247
S+ +R A A N ++ + + D + + E ++R+ LV +
Sbjct: 186 SSPKIRSHAV-ACVNQFIISRTQ-ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243
Query: 248 STYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEI--DILEEY------- 298
++L P++ +I + ++ +E VAL+A EFW ++ ++ I D+L +
Sbjct: 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPV 303
Query: 299 ---------------GGDFSGDSDI--------PCFYFIKHAXXX--XXXXXXXXXXXXX 333
GD D I P F+ +
Sbjct: 304 LVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDE 363
Query: 334 XXXXXXXGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGS 393
WN+ L ++A D+++P ++P ++E + EW +E+ G+
Sbjct: 364 IDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGA 423
Query: 394 ILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET---PI 450
I EG + ++P + + ++ L D V+ T WTL R ++ +T P+
Sbjct: 424 IAEG-CMQGMIPYLPELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 481
Query: 451 INQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALL 510
+ +++ +L S K V E AC A L + + L P+ I+ L+
Sbjct: 482 MT-----ELLKRILDSNK---RVQEAACSAFATLEE------EACTELVPYLAYILDTLV 527
Query: 511 TVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLI 553
+ + A TL + V ++ + M + PLI
Sbjct: 528 FAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLI 570
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 113/543 (20%), Positives = 215/543 (39%), Gaps = 81/543 (14%)
Query: 12 AQSVDGTVRKQAEESLKQY-QEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAK 70
+QS D T+++ ++ L+Q Q + +L+ + +L ++++P +R L+GLILKN + A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLILKNNVKAH 79
Query: 71 EQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGI-ELPHKQW 129
Q + + V IKS L + + R+T ++ +A EL + W
Sbjct: 80 FQ-----------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL--QNW 126
Query: 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNA--SE 187
P+L+ L S + +T + L ICE+ S++ ++ D +++ L +
Sbjct: 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIXIPKFLQFFKH 185
Query: 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247
S+ +R A A N ++ + + D + E ++R+ LV +
Sbjct: 186 SSPKIRSHAV-ACVNQFIISRTQ-ALXLHIDSFTENLFALAGDEEPEVRKNVCRALVXLL 243
Query: 248 STYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEI--DILEEY------- 298
++L P+ +I + ++ +E VAL+A EFW ++ ++ I D+L +
Sbjct: 244 EVRMDRLLPHXHNIVEYXLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPV 303
Query: 299 ---------------GGDFSGDSDI--------PCFYFIKHAXXX--XXXXXXXXXXXXX 333
GD D I P F+ +
Sbjct: 304 LVNGXKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDE 363
Query: 334 XXXXXXXGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGS 393
WN+ L ++A D+++P ++P ++E + EW +E+ G+
Sbjct: 364 IDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGA 423
Query: 394 ILEG------PSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLE 447
I EG P +L+P L + D V+ T WTL R ++ +
Sbjct: 424 IAEGCXQGXIPYLPELIP--------HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 475
Query: 448 TPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQ 507
T + + +++ +L S K V E AC A L + + L P+ I+
Sbjct: 476 TYL--KPLXTELLKRILDSNK---RVQEAACSAFATLEE------EACTELVPYLAYILD 524
Query: 508 ALL 510
L+
Sbjct: 525 TLV 527
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+ +A +I G S E+ +V+ +L+ P+ H+ + W LG + GS
Sbjct: 105 SAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAF 161
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQE 504
+I G ++++L VP+++ ACG L L + +P P ++
Sbjct: 162 RDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 216
Query: 505 IVQALLTVTHRED 517
I+ L+ + H D
Sbjct: 217 ILPTLVRLLHHND 229
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 99 SLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTL 151
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H D
Sbjct: 152 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 194
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+ +A +I G S E+ +V+ +L+ P+ H+ + W LG + GS
Sbjct: 107 SAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAF 163
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQE 504
+I G ++++L VP+++ ACG L L + +P P ++
Sbjct: 164 RDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 218
Query: 505 IVQALLTVTHRED 517
I+ L+ + H D
Sbjct: 219 ILPTLVRLLHHND 231
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 95 SLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALL-----AVPDLSTL 147
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H D
Sbjct: 148 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 190
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 95 SLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTL 147
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H D
Sbjct: 148 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 190
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 99 SLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALL-----AVPDLSTL 151
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H D
Sbjct: 152 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 194
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+ +A +I G S E+ +V+ +L+ P+ H+ + W LG + GS
Sbjct: 97 SAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAF 153
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQE 504
+I G ++++L VP+++ ACG L L + +P P ++
Sbjct: 154 RDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 208
Query: 505 IVQALLTVTHRED 517
I+ L+ + H D
Sbjct: 209 ILPTLVRLLHHND 221
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+ +A +I G S E+ +V+ +L+ P+ H+ + W LG + GS
Sbjct: 121 SAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAF 177
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQE 504
+I G ++++L VP+++ ACG L L + +P P ++
Sbjct: 178 RDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 232
Query: 505 IVQALLTVTHRED 517
I+ L+ + H D
Sbjct: 233 ILPTLVRLLHHND 245
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 100 SLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTL 152
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H D
Sbjct: 153 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 195
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 100 SLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTL 152
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H D
Sbjct: 153 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 195
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+ +A +I G S E+ +V+ +L+ P+ H+ + W LG + GS
Sbjct: 121 SAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAF 177
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQE 504
+I G ++++L VP+++ ACG L L + +P P ++
Sbjct: 178 RDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 232
Query: 505 IVQALLTVTHRED 517
I+ L+ + H D
Sbjct: 233 ILPTLVRLLHHND 245
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+ +A +I G S E+ +V+ +L+ P+ H+ + W LG + GS
Sbjct: 121 SAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAF 177
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQE 504
+I G ++++L VP+++ ACG L L + +P P ++
Sbjct: 178 RDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 232
Query: 505 IVQALLTVTHRED 517
I+ L+ + H D
Sbjct: 233 ILPTLVRLLHHND 245
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+ +A +I G S E+ +V+ +L+ P+ H+ + W LG + GS
Sbjct: 77 SAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAF 133
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQE 504
+I G ++++L VP+++ ACG L L + +P P ++
Sbjct: 134 RDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 188
Query: 505 IVQALLTVTHRED 517
I+ L+ + H D
Sbjct: 189 ILPTLVRLLHHND 201
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476
+L+ P+ H+ + W LG + GS +I G ++++L VP+++
Sbjct: 101 SLLASPHAHISEQAVWALGNIAG--DGSVFRDLVIKYGAVDPLLALLA-----VPDMSSL 153
Query: 477 ACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHRED 517
ACG L L + +P P ++I+ L+ + H +D
Sbjct: 154 ACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDD 196
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+ +A +I G S E+ +V+ +L+ P+ H+ + W LG + GS
Sbjct: 71 SAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAF 127
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQE 504
+I G ++++L VP+++ ACG L L + +P P ++
Sbjct: 128 RDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 182
Query: 505 IVQALLTVTHRED 517
I+ L+ + H D
Sbjct: 183 ILPTLVRLLHHND 195
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446
+ +A +I G S E+ +V+ +L+ P+ H+ + W LG + GS
Sbjct: 140 SAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG--AGSAF 196
Query: 447 ETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQE 504
+I G ++++L VP+++ ACG L L + +P P ++
Sbjct: 197 RDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 251
Query: 505 IVQALLTVTHRED 517
I+ L+ + H D
Sbjct: 252 ILPTLVRLLHHND 264
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
Length = 968
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 20/135 (14%)
Query: 12 AQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKE 71
A+SV + K +E +L+Q + Q+ GF L+L + + P+ +R L KN + K
Sbjct: 12 AESVIASTAKTSERNLRQLETQD--GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRK- 68
Query: 72 QHRKFELVQRWLS------LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP 125
W+ L ++ IK I+ + S ++ + + ++ +A + P
Sbjct: 69 ----------WVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP 118
Query: 126 HKQWPELIGALLSNI 140
+ WP L+ L S +
Sbjct: 119 DR-WPTLLSDLASRL 132
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 960
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 20/135 (14%)
Query: 12 AQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKE 71
A+SV + K +E +L+Q + Q+ GF L+L + + P+ +R L KN + K
Sbjct: 12 AESVIASTAKTSERNLRQLETQD--GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRK- 68
Query: 72 QHRKFELVQRWLS------LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP 125
W+ L ++ IK I+ + S ++ + + ++ +A + P
Sbjct: 69 ----------WVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP 118
Query: 126 HKQWPELIGALLSNI 140
+ WP L+ L S +
Sbjct: 119 DR-WPTLLSDLASRL 132
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 193 RLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE 252
RLA + ALG + N + D I ++ E + + + + +C+ AIS
Sbjct: 211 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 270
Query: 253 KLAPYIQDIFNITAKAVREDEEPV---ALQAIEFWSSVCDEEI 292
++ Y++ I + K D++ + +QA E + C +E+
Sbjct: 271 RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 313
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 193 RLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE 252
RLA + ALG + N + D I ++ E + + + + +C+ AIS
Sbjct: 188 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 247
Query: 253 KLAPYIQDIFNITAKAVREDEEPV---ALQAIEFWSSVCDEEI 292
++ Y++ I + K D++ + +QA E + C +E+
Sbjct: 248 RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,949,546
Number of Sequences: 62578
Number of extensions: 878127
Number of successful extensions: 2788
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2624
Number of HSP's gapped (non-prelim): 90
length of query: 872
length of database: 14,973,337
effective HSP length: 107
effective length of query: 765
effective length of database: 8,277,491
effective search space: 6332280615
effective search space used: 6332280615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)