Query 002876
Match_columns 872
No_of_seqs 275 out of 2540
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 12:34:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1241 Karyopherin (importin) 100.0 2E-104 5E-109 800.4 82.6 852 3-871 1-858 (859)
2 COG5215 KAP95 Karyopherin (imp 100.0 1.7E-81 3.7E-86 612.0 78.8 845 4-871 5-857 (858)
3 KOG2023 Nuclear transport rece 100.0 1.1E-73 2.3E-78 567.5 51.2 737 3-829 13-822 (885)
4 KOG2171 Karyopherin (importin) 100.0 1.7E-67 3.6E-72 562.4 73.7 791 2-870 3-916 (1075)
5 KOG1991 Nuclear transport rece 100.0 1.4E-35 3E-40 311.6 67.6 697 1-746 2-781 (1010)
6 KOG2171 Karyopherin (importin) 100.0 1.5E-35 3.2E-40 318.2 60.9 654 95-827 7-716 (1075)
7 KOG1241 Karyopherin (importin) 100.0 4.6E-34 1E-38 290.8 50.2 684 51-869 13-757 (859)
8 KOG2023 Nuclear transport rece 100.0 2.7E-33 5.7E-38 280.2 47.8 651 42-746 95-799 (885)
9 KOG1992 Nuclear export recepto 100.0 9.1E-30 2E-34 261.6 53.0 686 1-747 4-776 (960)
10 KOG2274 Predicted importin 9 [ 100.0 2.6E-28 5.6E-33 253.8 63.0 676 2-746 3-762 (1005)
11 COG5215 KAP95 Karyopherin (imp 100.0 9.4E-27 2E-31 229.4 54.7 664 51-849 17-733 (858)
12 KOG1824 TATA-binding protein-i 100.0 7.2E-26 1.6E-30 235.8 61.2 761 7-867 9-885 (1233)
13 KOG1824 TATA-binding protein-i 100.0 4.9E-25 1.1E-29 229.7 64.6 742 8-826 52-963 (1233)
14 KOG1993 Nuclear transport rece 100.0 9.9E-27 2.2E-31 238.2 48.6 687 5-743 2-790 (978)
15 COG5656 SXM1 Importin, protein 100.0 3.3E-24 7.1E-29 218.2 64.8 701 1-746 1-782 (970)
16 KOG2021 Nuclear mRNA export fa 99.9 6.1E-21 1.3E-25 194.8 51.6 744 1-827 1-871 (980)
17 KOG0213 Splicing factor 3b, su 99.9 3.1E-20 6.7E-25 189.1 50.6 686 3-826 363-1067(1172)
18 KOG2022 Nuclear transport rece 99.9 2.1E-17 4.6E-22 172.9 62.3 611 3-659 7-756 (982)
19 COG5101 CRM1 Importin beta-rel 99.9 5.2E-17 1.1E-21 163.1 59.7 525 5-561 16-675 (1053)
20 KOG0213 Splicing factor 3b, su 99.9 3E-18 6.6E-23 174.8 47.7 636 101-835 485-1153(1172)
21 COG5181 HSH155 U2 snRNP splice 99.9 7.5E-19 1.6E-23 175.6 39.3 686 3-827 168-873 (975)
22 KOG0915 Uncharacterized conser 99.9 1.3E-17 2.8E-22 183.8 50.2 630 85-848 811-1491(1702)
23 PLN03200 cellulose synthase-in 99.9 1.5E-16 3.3E-21 187.2 53.2 767 3-864 13-856 (2102)
24 COG5657 CSE1 CAS/CSE protein i 99.8 2.4E-16 5.2E-21 166.2 48.0 574 5-640 6-650 (947)
25 COG5181 HSH155 U2 snRNP splice 99.8 1.8E-16 3.9E-21 158.8 42.5 627 102-836 291-959 (975)
26 KOG0915 Uncharacterized conser 99.8 4.7E-16 1E-20 171.8 49.8 588 172-829 816-1432(1702)
27 PLN03200 cellulose synthase-in 99.8 2.2E-15 4.8E-20 177.6 50.2 708 52-869 28-765 (2102)
28 KOG1242 Protein containing ada 99.8 3.5E-15 7.7E-20 152.4 39.6 516 103-746 28-547 (569)
29 KOG1991 Nuclear transport rece 99.8 5.8E-12 1.3E-16 135.0 63.4 607 103-836 15-769 (1010)
30 KOG1242 Protein containing ada 99.8 5.4E-15 1.2E-19 151.1 35.9 488 88-661 51-547 (569)
31 KOG2081 Nuclear transport regu 99.7 7.1E-14 1.5E-18 140.7 39.0 474 21-550 2-551 (559)
32 KOG1248 Uncharacterized conser 99.7 1.7E-10 3.8E-15 126.5 59.6 732 36-872 92-902 (1176)
33 KOG0212 Uncharacterized conser 99.7 4.1E-13 9E-18 134.1 36.1 404 179-652 5-422 (675)
34 PF01602 Adaptin_N: Adaptin N 99.7 6.6E-13 1.4E-17 148.4 41.8 508 4-634 8-521 (526)
35 PF01602 Adaptin_N: Adaptin N 99.7 1.4E-11 3E-16 137.8 49.0 493 91-744 3-503 (526)
36 PTZ00429 beta-adaptin; Provisi 99.6 1.7E-10 3.7E-15 127.3 51.1 400 4-487 33-434 (746)
37 KOG0212 Uncharacterized conser 99.6 3.7E-12 8.1E-17 127.4 31.9 368 342-746 13-389 (675)
38 KOG0211 Protein phosphatase 2A 99.6 6.7E-11 1.5E-15 128.7 42.7 544 90-724 119-666 (759)
39 KOG0166 Karyopherin (importin) 99.6 7.4E-13 1.6E-17 135.0 25.5 358 371-777 70-437 (514)
40 PTZ00429 beta-adaptin; Provisi 99.6 5.7E-10 1.2E-14 123.3 49.1 438 2-540 67-511 (746)
41 KOG1992 Nuclear export recepto 99.5 8.6E-09 1.9E-13 108.6 52.0 669 50-829 16-798 (960)
42 KOG1943 Beta-tubulin folding c 99.5 8.1E-08 1.8E-12 104.8 55.1 483 37-591 341-882 (1133)
43 KOG0166 Karyopherin (importin) 99.5 3.8E-13 8.3E-18 137.1 14.1 318 368-723 110-437 (514)
44 KOG1248 Uncharacterized conser 99.5 2.7E-07 5.9E-12 102.1 59.2 732 4-850 139-923 (1176)
45 KOG0211 Protein phosphatase 2A 99.5 1.6E-09 3.4E-14 118.3 42.1 556 95-744 85-645 (759)
46 KOG2274 Predicted importin 9 [ 99.4 3.3E-07 7.2E-12 98.1 53.2 683 97-866 9-778 (1005)
47 KOG1943 Beta-tubulin folding c 99.4 3.8E-07 8.2E-12 99.8 53.8 640 105-825 188-882 (1133)
48 KOG1060 Vesicle coat complex A 99.4 4.4E-09 9.6E-14 110.0 37.7 500 96-729 39-540 (968)
49 PRK09687 putative lyase; Provi 99.4 1.5E-10 3.2E-15 113.9 22.5 250 179-532 28-278 (280)
50 KOG4224 Armadillo repeat prote 99.3 3.9E-11 8.4E-16 113.5 16.4 428 379-868 59-493 (550)
51 PRK13800 putative oxidoreducta 99.3 4.8E-10 1E-14 130.6 24.9 271 95-482 624-895 (897)
52 KOG1060 Vesicle coat complex A 99.3 5.3E-08 1.2E-12 102.2 35.7 441 218-776 70-533 (968)
53 COG5064 SRP1 Karyopherin (impo 99.3 9.2E-11 2E-15 110.0 13.9 341 370-746 74-426 (526)
54 PRK13800 putative oxidoreducta 99.2 2.5E-09 5.4E-14 124.7 26.7 275 38-436 622-896 (897)
55 PRK09687 putative lyase; Provi 99.2 6.7E-09 1.5E-13 102.3 24.5 225 5-289 25-250 (280)
56 KOG2020 Nuclear transport rece 99.2 2.1E-05 4.5E-10 89.4 54.8 187 4-208 11-222 (1041)
57 KOG1062 Vesicle coat complex A 99.2 4.5E-06 9.8E-11 88.7 45.3 434 172-727 105-549 (866)
58 COG5064 SRP1 Karyopherin (impo 99.2 5.5E-10 1.2E-14 104.9 14.4 322 364-722 115-443 (526)
59 PF10508 Proteasom_PSMB: Prote 99.2 9E-08 2E-12 103.7 33.2 355 97-487 43-421 (503)
60 PF10508 Proteasom_PSMB: Prote 99.2 2.3E-07 4.9E-12 100.6 35.7 384 1-440 1-421 (503)
61 COG5656 SXM1 Importin, protein 99.1 3.3E-05 7.1E-10 81.4 54.4 375 423-850 429-827 (970)
62 PF03810 IBN_N: Importin-beta 99.1 4E-10 8.7E-15 87.7 7.3 76 23-102 1-76 (77)
63 KOG0392 SNF2 family DNA-depend 99.0 2.8E-06 6E-11 94.3 37.8 180 625-830 750-931 (1549)
64 PF08506 Cse1: Cse1; InterPro 99.0 8.9E-08 1.9E-12 97.8 24.5 220 233-481 110-370 (370)
65 KOG1061 Vesicle coat complex A 99.0 1.4E-06 3E-11 92.6 33.0 434 1-530 47-483 (734)
66 KOG1240 Protein kinase contain 99.0 9.5E-08 2.1E-12 105.1 23.7 300 132-490 423-729 (1431)
67 KOG1062 Vesicle coat complex A 99.0 2.4E-05 5.2E-10 83.4 39.9 448 132-673 108-575 (866)
68 KOG1020 Sister chromatid cohes 99.0 0.00014 3E-09 83.2 47.3 147 127-287 812-958 (1692)
69 COG5240 SEC21 Vesicle coat com 98.9 4.8E-05 1E-09 77.7 37.0 377 91-547 21-415 (898)
70 PF12460 MMS19_C: RNAPII trans 98.9 1.1E-05 2.3E-10 85.9 34.7 367 234-656 17-413 (415)
71 KOG1059 Vesicle coat complex A 98.9 0.00023 5E-09 75.1 44.7 253 219-540 144-402 (877)
72 KOG4535 HEAT and armadillo rep 98.9 8.4E-06 1.8E-10 81.2 29.5 475 51-560 8-585 (728)
73 KOG1967 DNA repair/transcripti 98.9 0.00035 7.7E-09 76.0 45.7 155 688-865 864-1021(1030)
74 COG5240 SEC21 Vesicle coat com 98.8 0.00017 3.8E-09 73.7 38.8 479 85-677 58-553 (898)
75 KOG4535 HEAT and armadillo rep 98.8 2.1E-06 4.4E-11 85.3 24.7 518 105-659 9-623 (728)
76 KOG1059 Vesicle coat complex A 98.8 4.1E-05 8.9E-10 80.5 34.6 339 408-827 143-493 (877)
77 PF12460 MMS19_C: RNAPII trans 98.8 5.2E-06 1.1E-10 88.3 28.0 380 134-555 2-413 (415)
78 KOG1020 Sister chromatid cohes 98.8 0.00099 2.2E-08 76.6 53.3 406 92-541 816-1259(1692)
79 KOG1240 Protein kinase contain 98.7 3E-06 6.6E-11 93.7 23.4 287 189-540 436-729 (1431)
80 PF12348 CLASP_N: CLASP N term 98.7 1.2E-06 2.5E-11 85.5 18.2 184 228-442 16-209 (228)
81 KOG1993 Nuclear transport rece 98.7 0.0011 2.5E-08 70.9 52.6 243 471-745 501-751 (978)
82 PF12348 CLASP_N: CLASP N term 98.6 4.4E-07 9.6E-12 88.5 13.8 192 618-834 17-216 (228)
83 KOG4224 Armadillo repeat prote 98.6 2.9E-06 6.3E-11 81.3 18.4 342 105-537 60-406 (550)
84 PF12755 Vac14_Fab1_bd: Vacuol 98.6 2E-07 4.4E-12 74.1 8.4 94 382-485 1-95 (97)
85 KOG2259 Uncharacterized conser 98.6 0.0002 4.2E-09 74.8 30.4 300 217-591 196-512 (823)
86 KOG1061 Vesicle coat complex A 98.6 0.00024 5.1E-09 76.2 31.8 441 4-540 14-457 (734)
87 KOG1058 Vesicle coat complex C 98.5 0.00033 7.1E-09 74.3 31.2 418 351-865 39-460 (948)
88 KOG1058 Vesicle coat complex C 98.5 0.0012 2.7E-08 70.1 34.3 359 92-539 99-466 (948)
89 KOG1077 Vesicle coat complex A 98.4 0.0046 9.9E-08 65.5 35.4 431 364-859 108-578 (938)
90 KOG0168 Putative ubiquitin fus 98.4 0.0011 2.4E-08 71.6 30.8 388 407-849 209-653 (1051)
91 KOG1967 DNA repair/transcripti 98.4 0.0082 1.8E-07 65.9 48.1 156 604-773 863-1021(1030)
92 PF12755 Vac14_Fab1_bd: Vacuol 98.3 2.5E-06 5.5E-11 67.9 8.1 87 624-713 2-88 (97)
93 PF03378 CAS_CSE1: CAS/CSE pro 98.3 0.00026 5.6E-09 74.4 25.2 236 494-747 16-255 (435)
94 KOG2021 Nuclear mRNA export fa 98.3 0.01 2.2E-07 63.6 50.9 509 29-589 181-819 (980)
95 KOG1078 Vesicle coat complex C 98.3 0.011 2.5E-07 63.7 37.0 106 90-205 20-129 (865)
96 KOG1410 Nuclear transport rece 98.2 0.012 2.6E-07 62.0 47.6 253 4-271 6-312 (1082)
97 PF08389 Xpo1: Exportin 1-like 98.2 6.6E-06 1.4E-10 74.0 9.1 131 106-243 2-148 (148)
98 PF03378 CAS_CSE1: CAS/CSE pro 98.2 0.00011 2.3E-09 77.2 19.1 242 452-727 20-277 (435)
99 PF14500 MMS19_N: Dos2-interac 98.2 0.00028 6.1E-09 68.7 20.2 247 372-656 4-257 (262)
100 COG5096 Vesicle coat complex, 98.2 0.02 4.4E-07 63.3 40.5 137 5-161 57-196 (757)
101 PF13513 HEAT_EZ: HEAT-like re 98.2 3.3E-06 7.1E-11 60.1 4.9 55 381-437 1-55 (55)
102 KOG2259 Uncharacterized conser 98.1 0.0042 9.1E-08 65.3 28.4 304 136-540 203-515 (823)
103 KOG2956 CLIP-associating prote 98.1 0.0002 4.4E-09 71.8 17.6 202 413-654 290-495 (516)
104 PF14500 MMS19_N: Dos2-interac 98.1 0.00096 2.1E-08 65.0 22.0 246 136-417 4-258 (262)
105 KOG2956 CLIP-associating prote 98.1 0.00036 7.8E-09 70.1 18.7 202 459-695 287-494 (516)
106 KOG2022 Nuclear transport rece 98.1 0.035 7.5E-07 61.0 54.1 278 548-846 458-753 (982)
107 cd00020 ARM Armadillo/beta-cat 98.0 1.1E-05 2.4E-10 69.5 6.8 109 368-485 8-119 (120)
108 KOG0168 Putative ubiquitin fus 98.0 0.0054 1.2E-07 66.5 27.1 155 454-640 207-367 (1051)
109 PF05804 KAP: Kinesin-associat 98.0 0.00033 7.1E-09 77.4 19.1 388 412-868 253-649 (708)
110 KOG0891 DNA-dependent protein 97.9 0.15 3.2E-06 64.4 47.2 561 130-835 479-1052(2341)
111 KOG2032 Uncharacterized conser 97.9 0.016 3.5E-07 59.2 26.6 151 377-544 227-379 (533)
112 KOG1078 Vesicle coat complex C 97.9 0.061 1.3E-06 58.4 40.5 411 350-867 118-531 (865)
113 KOG4653 Uncharacterized conser 97.9 0.00084 1.8E-08 72.6 17.9 200 459-689 728-928 (982)
114 KOG4653 Uncharacterized conser 97.8 0.0055 1.2E-07 66.7 22.0 232 409-680 727-965 (982)
115 PF10274 ParcG: Parkin co-regu 97.8 0.00049 1.1E-08 61.3 12.0 121 606-727 36-169 (183)
116 PF05918 API5: Apoptosis inhib 97.7 0.006 1.3E-07 65.0 21.2 157 96-272 27-190 (556)
117 PF05004 IFRD: Interferon-rela 97.7 0.0088 1.9E-07 60.3 21.6 196 96-291 47-259 (309)
118 PF13646 HEAT_2: HEAT repeats; 97.7 0.00025 5.5E-09 56.7 8.8 84 370-482 2-88 (88)
119 PF12717 Cnd1: non-SMC mitotic 97.7 0.0034 7.4E-08 57.8 17.0 130 105-248 1-139 (178)
120 COG5096 Vesicle coat complex, 97.7 0.15 3.3E-06 56.7 42.5 166 187-397 30-196 (757)
121 PF13513 HEAT_EZ: HEAT-like re 97.7 4.4E-05 9.4E-10 54.3 3.5 54 424-484 1-55 (55)
122 PF08506 Cse1: Cse1; InterPro 97.7 0.008 1.7E-07 62.0 21.1 263 526-818 52-369 (370)
123 PF05804 KAP: Kinesin-associat 97.7 0.011 2.4E-07 65.7 23.4 369 386-825 268-650 (708)
124 PLN03076 ARF guanine nucleotid 97.6 0.035 7.7E-07 68.3 29.2 305 520-853 1150-1516(1780)
125 KOG4413 26S proteasome regulat 97.6 0.022 4.8E-07 54.7 21.2 250 349-639 63-335 (524)
126 KOG1077 Vesicle coat complex A 97.6 0.15 3.2E-06 54.7 38.8 348 228-655 83-451 (938)
127 PF05918 API5: Apoptosis inhib 97.6 0.058 1.3E-06 57.8 26.6 190 50-269 33-228 (556)
128 KOG1293 Proteins containing ar 97.6 0.15 3.2E-06 54.4 28.9 145 379-538 389-535 (678)
129 PF05004 IFRD: Interferon-rela 97.6 0.013 2.9E-07 59.0 21.0 210 611-828 46-261 (309)
130 PF12717 Cnd1: non-SMC mitotic 97.6 0.0067 1.5E-07 55.9 17.4 110 52-180 1-111 (178)
131 KOG2032 Uncharacterized conser 97.6 0.041 9E-07 56.3 23.5 261 131-439 258-531 (533)
132 PF13001 Ecm29: Proteasome sta 97.6 0.13 2.8E-06 56.3 29.6 384 5-440 25-489 (501)
133 PF08167 RIX1: rRNA processing 97.5 0.004 8.6E-08 56.2 15.0 136 604-743 21-164 (165)
134 KOG0414 Chromosome condensatio 97.5 0.28 6.2E-06 56.1 64.6 183 646-868 916-1103(1251)
135 KOG0891 DNA-dependent protein 97.5 0.58 1.3E-05 59.3 52.0 192 609-820 566-759 (2341)
136 KOG1820 Microtubule-associated 97.5 0.0021 4.6E-08 72.0 14.9 197 606-829 251-448 (815)
137 KOG1837 Uncharacterized conser 97.5 0.26 5.7E-06 58.1 31.3 223 627-871 1368-1614(1621)
138 KOG1820 Microtubule-associated 97.5 0.0041 8.8E-08 69.8 16.6 198 362-595 248-448 (815)
139 COG1413 FOG: HEAT repeat [Ener 97.4 0.17 3.7E-06 52.7 28.2 282 37-435 43-331 (335)
140 KOG0392 SNF2 family DNA-depend 97.4 0.4 8.6E-06 55.3 48.8 158 127-290 71-238 (1549)
141 cd00020 ARM Armadillo/beta-cat 97.4 0.0002 4.4E-09 61.6 5.1 110 609-721 8-119 (120)
142 PF13646 HEAT_2: HEAT repeats; 97.4 0.0011 2.3E-08 53.1 8.5 86 412-532 2-88 (88)
143 PF02985 HEAT: HEAT repeat; I 97.4 0.00036 7.8E-09 42.2 4.2 30 410-440 1-30 (31)
144 TIGR02270 conserved hypothetic 97.3 0.12 2.5E-06 54.3 24.8 241 93-439 55-296 (410)
145 KOG1822 Uncharacterized conser 97.3 0.69 1.5E-05 56.0 33.7 243 408-680 875-1128(2067)
146 TIGR02270 conserved hypothetic 97.3 0.084 1.8E-06 55.4 23.7 242 130-485 53-295 (410)
147 COG1413 FOG: HEAT repeat [Ener 97.3 0.046 9.9E-07 57.0 22.1 199 174-439 43-242 (335)
148 KOG1293 Proteins containing ar 97.3 0.35 7.5E-06 51.8 28.9 140 577-724 393-535 (678)
149 KOG4413 26S proteasome regulat 97.3 0.19 4.2E-06 48.5 31.1 295 109-441 60-379 (524)
150 KOG2062 26S proteasome regulat 97.3 0.4 8.6E-06 52.0 36.2 122 609-746 555-677 (929)
151 PF01603 B56: Protein phosphat 97.2 0.032 6.9E-07 59.0 19.5 264 378-679 101-370 (409)
152 KOG2025 Chromosome condensatio 97.2 0.45 9.7E-06 51.4 43.0 173 86-283 79-253 (892)
153 PF04826 Arm_2: Armadillo-like 97.2 0.018 3.9E-07 55.8 15.8 193 608-829 12-210 (254)
154 COG5218 YCG1 Chromosome conden 97.2 0.03 6.5E-07 58.3 17.7 107 88-201 87-195 (885)
155 PF10274 ParcG: Parkin co-regu 97.2 0.0012 2.5E-08 59.0 6.8 95 648-745 37-135 (183)
156 PF08167 RIX1: rRNA processing 97.1 0.011 2.4E-07 53.4 12.7 142 365-513 23-164 (165)
157 KOG1517 Guanine nucleotide bin 97.0 0.017 3.6E-07 64.4 14.8 228 235-488 486-734 (1387)
158 PF11865 DUF3385: Domain of un 97.0 0.0051 1.1E-07 55.0 9.2 116 606-723 8-158 (160)
159 KOG0414 Chromosome condensatio 97.0 1.1 2.5E-05 51.5 54.6 155 128-290 267-429 (1251)
160 KOG1525 Sister chromatid cohes 96.9 1.5 3.2E-05 52.5 45.3 146 220-396 260-405 (1266)
161 PF08623 TIP120: TATA-binding 96.9 0.0044 9.5E-08 54.8 8.0 131 644-780 4-151 (169)
162 PF13251 DUF4042: Domain of un 96.9 0.017 3.6E-07 52.3 11.8 140 147-289 2-174 (182)
163 PLN03076 ARF guanine nucleotid 96.9 2.2 4.9E-05 53.4 46.8 336 187-559 1148-1513(1780)
164 PF02985 HEAT: HEAT repeat; I 96.7 0.002 4.3E-08 39.0 3.2 30 368-397 1-30 (31)
165 PF04826 Arm_2: Armadillo-like 96.7 0.051 1.1E-06 52.7 14.6 187 95-290 15-206 (254)
166 KOG2549 Transcription initiati 96.7 0.079 1.7E-06 55.2 16.0 158 220-398 208-372 (576)
167 PF12719 Cnd3: Nuclear condens 96.7 0.26 5.7E-06 50.0 20.0 112 130-249 25-144 (298)
168 PF12054 DUF3535: Domain of un 96.7 0.18 3.9E-06 53.8 19.4 216 341-559 99-365 (441)
169 PF13251 DUF4042: Domain of un 96.6 0.02 4.4E-07 51.8 10.3 142 107-250 1-176 (182)
170 KOG2213 Apoptosis inhibitor 5/ 96.6 0.92 2E-05 45.4 22.7 237 51-332 36-295 (460)
171 KOG2025 Chromosome condensatio 96.6 0.59 1.3E-05 50.5 21.8 195 195-436 61-256 (892)
172 KOG2160 Armadillo/beta-catenin 96.6 0.034 7.4E-07 55.0 12.2 163 379-558 95-262 (342)
173 KOG0413 Uncharacterized conser 96.5 2 4.2E-05 48.4 40.4 110 173-288 575-684 (1529)
174 KOG2933 Uncharacterized conser 96.5 0.054 1.2E-06 52.1 12.7 189 650-871 89-280 (334)
175 PF08064 UME: UME (NUC010) dom 96.5 0.04 8.6E-07 45.3 10.5 96 602-700 5-105 (107)
176 PF12719 Cnd3: Nuclear condens 96.5 0.22 4.8E-06 50.5 18.2 111 91-205 26-143 (298)
177 PF11865 DUF3385: Domain of un 96.5 0.068 1.5E-06 47.9 12.6 150 647-825 8-158 (160)
178 PF10521 DUF2454: Protein of u 96.4 0.077 1.7E-06 53.1 14.1 176 379-558 87-275 (282)
179 KOG1517 Guanine nucleotide bin 96.3 0.22 4.8E-06 56.0 17.7 197 31-250 466-673 (1387)
180 KOG1837 Uncharacterized conser 96.3 2.8 6.1E-05 50.1 26.8 102 709-834 1520-1621(1621)
181 smart00802 UME Domain in UVSB 96.3 0.073 1.6E-06 43.4 10.5 96 602-700 5-105 (107)
182 KOG1949 Uncharacterized conser 96.3 0.13 2.9E-06 55.0 14.9 152 92-249 174-332 (1005)
183 PF08767 CRM1_C: CRM1 C termin 96.2 0.39 8.3E-06 49.0 18.0 166 522-703 42-226 (319)
184 KOG2160 Armadillo/beta-catenin 96.2 0.12 2.7E-06 51.2 13.6 158 580-743 102-261 (342)
185 KOG1243 Protein kinase [Genera 96.2 0.12 2.6E-06 55.8 14.5 189 218-442 329-518 (690)
186 PF08767 CRM1_C: CRM1 C termin 96.2 1.8 3.8E-05 44.3 25.0 145 577-726 43-198 (319)
187 KOG2933 Uncharacterized conser 96.1 0.087 1.9E-06 50.7 11.4 144 372-539 93-237 (334)
188 cd00256 VATPase_H VATPase_H, r 96.1 2 4.4E-05 45.1 22.4 268 580-866 120-423 (429)
189 COG5098 Chromosome condensatio 96.0 2.1 4.4E-05 46.4 21.9 131 347-487 280-416 (1128)
190 PF03224 V-ATPase_H_N: V-ATPas 96.0 0.29 6.4E-06 50.0 16.2 230 621-866 70-312 (312)
191 COG5095 TAF6 Transcription ini 96.0 0.38 8.2E-06 45.9 14.9 149 227-398 206-361 (450)
192 KOG1949 Uncharacterized conser 96.0 0.25 5.5E-06 53.0 15.2 204 79-288 112-330 (1005)
193 PF11864 DUF3384: Domain of un 95.9 3.4 7.4E-05 45.0 32.9 300 189-539 3-334 (464)
194 PF13001 Ecm29: Proteasome sta 95.9 0.79 1.7E-05 50.2 19.5 213 49-286 247-485 (501)
195 cd08050 TAF6 TATA Binding Prot 95.8 0.17 3.7E-06 52.0 13.5 154 219-396 178-340 (343)
196 PF01603 B56: Protein phosphat 95.8 3.2 6.9E-05 44.1 24.3 231 92-359 133-371 (409)
197 cd00256 VATPase_H VATPase_H, r 95.7 3.4 7.3E-05 43.6 24.9 203 34-249 50-259 (429)
198 KOG0946 ER-Golgi vesicle-tethe 95.7 4.4 9.5E-05 44.9 40.6 211 219-487 22-242 (970)
199 KOG2062 26S proteasome regulat 95.7 0.14 3E-06 55.2 12.2 147 369-553 521-670 (929)
200 PF08064 UME: UME (NUC010) dom 95.6 0.14 3.1E-06 42.1 9.7 95 645-743 7-105 (107)
201 KOG0567 HEAT repeat-containing 95.5 1.4 3E-05 41.8 16.5 63 365-439 216-280 (289)
202 smart00802 UME Domain in UVSB 95.5 0.18 3.8E-06 41.2 9.6 95 644-742 6-104 (107)
203 PF08161 NUC173: NUC173 domain 95.5 1.7 3.7E-05 40.4 17.3 191 615-822 7-197 (198)
204 PF04118 Dopey_N: Dopey, N-ter 95.4 2.1 4.5E-05 42.9 18.8 195 603-822 49-252 (307)
205 PF04510 DUF577: Family of unk 95.4 0.92 2E-05 40.0 14.1 154 92-250 3-166 (174)
206 COG5218 YCG1 Chromosome conden 95.4 3.6 7.9E-05 43.7 20.5 116 170-289 45-161 (885)
207 KOG2137 Protein kinase [Signal 95.4 1.2 2.7E-05 48.6 18.0 208 581-828 293-500 (700)
208 KOG2759 Vacuolar H+-ATPase V1 95.3 4 8.7E-05 41.7 22.5 203 36-250 64-273 (442)
209 PF04118 Dopey_N: Dopey, N-ter 95.2 2.1 4.6E-05 42.9 18.1 167 479-675 30-197 (307)
210 PF12231 Rif1_N: Rap1-interact 95.2 4.9 0.00011 42.2 28.9 271 382-682 8-306 (372)
211 PF11864 DUF3384: Domain of un 95.2 5.9 0.00013 43.1 36.3 409 345-822 6-464 (464)
212 KOG2759 Vacuolar H+-ATPase V1 95.1 4.7 0.0001 41.2 22.6 71 649-722 366-438 (442)
213 COG5095 TAF6 Transcription ini 95.0 1.1 2.5E-05 42.8 14.6 82 642-723 270-360 (450)
214 KOG2149 Uncharacterized conser 95.0 0.5 1.1E-05 47.8 13.0 133 130-267 57-189 (393)
215 COG5116 RPN2 26S proteasome re 95.0 0.23 4.9E-06 51.9 10.9 148 371-556 520-670 (926)
216 KOG4524 Uncharacterized conser 94.8 9.5 0.00021 43.6 41.9 95 606-701 801-899 (1014)
217 KOG2137 Protein kinase [Signal 94.5 4.7 0.0001 44.3 19.6 207 231-484 285-494 (700)
218 COG5116 RPN2 26S proteasome re 94.4 0.53 1.1E-05 49.3 11.8 113 376-516 561-674 (926)
219 PF10521 DUF2454: Protein of u 94.4 1.2 2.6E-05 44.6 14.5 145 602-746 113-277 (282)
220 PF12530 DUF3730: Protein of u 94.4 5.3 0.00012 38.7 21.6 195 13-234 11-218 (234)
221 KOG4524 Uncharacterized conser 94.3 13 0.00027 42.6 48.8 94 650-746 804-901 (1014)
222 KOG1048 Neural adherens juncti 94.1 2.7 5.9E-05 46.5 17.0 151 688-861 515-677 (717)
223 PF10363 DUF2435: Protein of u 94.1 0.66 1.4E-05 36.7 9.4 73 131-208 3-75 (92)
224 PF12231 Rif1_N: Rap1-interact 94.0 9.2 0.0002 40.2 32.1 141 144-286 59-201 (372)
225 PF14664 RICTOR_N: Rapamycin-i 94.0 9 0.00019 40.0 21.2 121 127-255 21-144 (371)
226 KOG0889 Histone acetyltransfer 93.9 31 0.00067 45.8 42.6 328 368-725 985-1349(3550)
227 KOG2549 Transcription initiati 93.8 3.4 7.3E-05 43.8 16.1 133 609-746 208-351 (576)
228 PF10363 DUF2435: Protein of u 93.6 1 2.2E-05 35.7 9.6 73 176-253 5-77 (92)
229 PF14664 RICTOR_N: Rapamycin-i 93.4 8.1 0.00018 40.3 18.5 224 11-250 33-271 (371)
230 smart00638 LPD_N Lipoprotein N 93.4 9.9 0.00022 43.1 21.2 137 363-531 393-540 (574)
231 KOG0946 ER-Golgi vesicle-tethe 93.3 16 0.00035 40.7 45.2 156 130-290 21-196 (970)
232 KOG1243 Protein kinase [Genera 93.3 0.35 7.5E-06 52.4 8.4 187 38-251 331-518 (690)
233 KOG0803 Predicted E3 ubiquitin 93.2 8.6 0.00019 46.5 20.2 106 178-286 45-150 (1312)
234 KOG0413 Uncharacterized conser 92.9 21 0.00045 40.9 45.0 127 709-868 947-1073(1529)
235 PF08623 TIP120: TATA-binding 92.9 3.1 6.6E-05 37.3 12.4 128 454-594 5-151 (169)
236 KOG3961 Uncharacterized conser 92.6 0.61 1.3E-05 42.2 7.6 92 649-743 114-208 (262)
237 PF01347 Vitellogenin_N: Lipop 92.6 24 0.00051 40.6 23.4 131 96-245 435-586 (618)
238 PF08569 Mo25: Mo25-like; Int 92.4 15 0.00031 37.7 26.0 187 95-289 79-283 (335)
239 PF01347 Vitellogenin_N: Lipop 92.4 25 0.00054 40.4 22.9 90 366-478 520-614 (618)
240 KOG4199 Uncharacterized conser 92.3 13 0.00028 36.9 28.0 297 187-531 118-439 (461)
241 cd08050 TAF6 TATA Binding Prot 92.3 1.3 2.9E-05 45.6 11.1 92 628-719 237-337 (343)
242 KOG2149 Uncharacterized conser 92.2 2.6 5.6E-05 42.9 12.3 133 610-745 60-193 (393)
243 KOG3961 Uncharacterized conser 91.8 0.66 1.4E-05 42.0 6.9 94 608-703 114-210 (262)
244 KOG2122 Beta-catenin-binding p 91.6 6 0.00013 47.2 15.6 217 623-861 366-594 (2195)
245 KOG4500 Rho/Rac GTPase guanine 91.3 20 0.00043 37.0 24.0 153 366-537 314-476 (604)
246 smart00638 LPD_N Lipoprotein N 91.2 22 0.00047 40.4 20.3 125 577-718 413-541 (574)
247 PF05536 Neurochondrin: Neuroc 91.1 29 0.00062 38.6 35.8 247 370-643 8-267 (543)
248 KOG0803 Predicted E3 ubiquitin 90.9 11 0.00023 45.8 17.5 240 606-852 39-289 (1312)
249 PF03224 V-ATPase_H_N: V-ATPas 90.9 8.9 0.00019 39.3 15.4 92 609-700 106-200 (312)
250 KOG0567 HEAT repeat-containing 90.7 16 0.00035 35.0 19.7 119 40-202 6-126 (289)
251 KOG1851 Uncharacterized conser 90.7 49 0.0011 40.5 34.3 148 690-865 1525-1675(1710)
252 PF09324 DUF1981: Domain of un 90.4 3.5 7.6E-05 32.3 9.1 68 218-285 16-84 (86)
253 PF00514 Arm: Armadillo/beta-c 90.4 0.62 1.4E-05 30.3 4.2 29 409-438 12-40 (41)
254 KOG1048 Neural adherens juncti 90.1 37 0.0008 38.1 20.1 112 133-249 235-350 (717)
255 KOG1222 Kinesin associated pro 89.8 28 0.00061 36.4 26.2 117 426-558 279-396 (791)
256 PF04510 DUF577: Family of unk 89.7 3.1 6.7E-05 36.8 9.0 65 612-676 46-111 (174)
257 PF12830 Nipped-B_C: Sister ch 89.5 14 0.00031 34.3 14.1 80 92-174 8-87 (187)
258 KOG1525 Sister chromatid cohes 89.4 60 0.0013 39.7 49.7 358 101-515 59-435 (1266)
259 cd03569 VHS_Hrs_Vps27p VHS dom 89.3 10 0.00022 33.2 12.1 78 606-683 39-118 (142)
260 cd03568 VHS_STAM VHS domain fa 88.7 12 0.00025 32.9 12.1 78 606-683 35-114 (144)
261 PF12830 Nipped-B_C: Sister ch 88.4 6.4 0.00014 36.5 11.0 79 169-259 7-85 (187)
262 PF05536 Neurochondrin: Neuroc 88.1 48 0.001 36.9 38.8 81 407-489 182-264 (543)
263 smart00288 VHS Domain present 88.0 15 0.00033 31.7 12.3 77 607-683 36-115 (133)
264 PF08161 NUC173: NUC173 domain 87.9 11 0.00025 35.1 12.1 57 580-642 19-75 (198)
265 PF04388 Hamartin: Hamartin pr 87.6 16 0.00034 41.7 15.3 95 604-700 66-161 (668)
266 KOG0889 Histone acetyltransfer 87.6 1.2E+02 0.0026 40.9 47.8 361 458-858 984-1375(3550)
267 KOG2081 Nuclear transport regu 87.5 45 0.00098 35.9 42.5 249 470-744 260-517 (559)
268 PF11698 V-ATPase_H_C: V-ATPas 87.4 2 4.3E-05 35.7 6.0 71 130-205 42-115 (119)
269 cd03561 VHS VHS domain family; 87.4 14 0.0003 32.0 11.7 78 606-683 35-116 (133)
270 PF08389 Xpo1: Exportin 1-like 87.4 2 4.4E-05 38.1 6.9 125 346-481 5-148 (148)
271 PF14222 MOR2-PAG1_N: Cell mor 86.8 57 0.0012 36.3 27.0 203 83-292 26-252 (552)
272 PF08713 DNA_alkylation: DNA a 86.2 14 0.00031 35.2 12.6 69 366-442 119-187 (213)
273 KOG4199 Uncharacterized conser 86.0 39 0.00086 33.7 31.8 307 128-484 105-442 (461)
274 PF14225 MOR2-PAG1_C: Cell mor 85.4 40 0.00086 33.2 18.0 192 406-642 61-259 (262)
275 PF12530 DUF3730: Protein of u 85.4 37 0.00081 32.9 21.8 177 226-435 8-185 (234)
276 PF07571 DUF1546: Protein of u 85.3 2.5 5.4E-05 33.6 5.5 57 340-396 17-78 (92)
277 KOG0929 Guanine nucleotide exc 84.8 98 0.0021 38.3 20.0 160 105-270 1050-1226(1514)
278 cd03568 VHS_STAM VHS domain fa 84.6 11 0.00023 33.1 9.6 77 648-726 36-114 (144)
279 KOG1851 Uncharacterized conser 84.5 1.1E+02 0.0024 37.7 34.9 169 347-536 1505-1678(1710)
280 PF00514 Arm: Armadillo/beta-c 84.2 2.2 4.7E-05 27.7 4.0 28 458-485 12-40 (41)
281 PF11698 V-ATPase_H_C: V-ATPas 83.7 3.8 8.3E-05 34.0 6.0 78 170-249 39-116 (119)
282 PF04388 Hamartin: Hamartin pr 83.6 25 0.00055 40.1 14.6 153 96-269 8-161 (668)
283 PF00790 VHS: VHS domain; Int 83.3 19 0.00042 31.4 10.9 77 606-682 40-121 (140)
284 PF14631 FancD2: Fanconi anaem 82.2 1.5E+02 0.0033 37.4 29.5 116 402-538 428-544 (1426)
285 PF08146 BP28CT: BP28CT (NUC21 82.1 15 0.00032 32.7 9.6 80 624-703 37-120 (153)
286 cd03572 ENTH_epsin_related ENT 82.1 25 0.00055 29.6 10.3 84 689-776 36-119 (122)
287 PF12333 Ipi1_N: Rix1 complex 81.6 4.1 9E-05 33.2 5.5 62 495-559 2-64 (102)
288 cd03561 VHS VHS domain family; 80.9 20 0.00044 31.0 9.9 100 103-209 15-116 (133)
289 KOG2122 Beta-catenin-binding p 80.9 1.5E+02 0.0032 36.5 21.4 130 614-746 444-584 (2195)
290 cd03567 VHS_GGA VHS domain fam 80.9 20 0.00042 31.2 9.7 77 649-726 38-120 (139)
291 PF12333 Ipi1_N: Rix1 complex 80.8 18 0.00039 29.5 8.9 61 601-661 4-65 (102)
292 PF12765 Cohesin_HEAT: HEAT re 79.9 4.2 9.1E-05 26.6 4.0 25 408-433 17-41 (42)
293 PF11919 DUF3437: Domain of un 78.9 4.1 9E-05 32.0 4.5 56 382-440 4-59 (90)
294 KOG1222 Kinesin associated pro 78.8 92 0.002 32.8 20.1 53 607-661 344-398 (791)
295 PF11701 UNC45-central: Myosin 78.6 7.2 0.00016 34.9 6.6 130 344-483 20-156 (157)
296 PF10350 DUF2428: Putative dea 78.4 71 0.0015 31.5 14.1 189 423-622 60-254 (255)
297 cd03565 VHS_Tom1 VHS domain fa 78.1 24 0.00053 30.8 9.5 79 649-727 38-120 (141)
298 PF12054 DUF3535: Domain of un 77.9 1.1E+02 0.0023 33.1 24.0 95 381-486 101-208 (441)
299 PF12783 Sec7_N: Guanine nucle 77.8 27 0.00057 31.8 10.3 97 625-722 39-146 (168)
300 PF12074 DUF3554: Domain of un 77.8 93 0.002 32.3 19.6 69 408-486 21-90 (339)
301 smart00288 VHS Domain present 77.6 22 0.00048 30.7 9.1 75 650-725 38-114 (133)
302 PF12765 Cohesin_HEAT: HEAT re 77.3 3.9 8.4E-05 26.7 3.3 41 154-200 2-42 (42)
303 PF00790 VHS: VHS domain; Int 76.7 21 0.00045 31.2 8.9 77 648-725 41-121 (140)
304 KOG3687 Tuberin - Rap/ran-GTPa 76.7 1.6E+02 0.0034 34.4 26.8 35 170-205 63-97 (1697)
305 cd03567 VHS_GGA VHS domain fam 76.1 53 0.0011 28.6 12.4 75 608-682 38-119 (139)
306 COG5098 Chromosome condensatio 75.4 1.4E+02 0.0031 33.3 51.1 165 36-205 239-415 (1128)
307 PF11935 DUF3453: Domain of un 75.0 85 0.0019 30.5 14.7 90 173-268 42-161 (239)
308 KOG1848 Uncharacterized conser 74.8 90 0.0019 37.9 15.1 129 694-826 1000-1134(1610)
309 PF12783 Sec7_N: Guanine nucle 74.8 66 0.0014 29.2 14.2 101 189-289 35-146 (168)
310 PF12397 U3snoRNP10: U3 small 74.4 22 0.00047 30.1 8.2 73 405-487 2-75 (121)
311 smart00185 ARM Armadillo/beta- 73.9 6 0.00013 25.3 3.7 28 410-438 13-40 (41)
312 KOG2085 Serine/threonine prote 73.8 53 0.0012 33.9 11.5 75 581-660 319-395 (457)
313 PF07571 DUF1546: Protein of u 73.5 13 0.00028 29.6 6.0 60 661-720 17-76 (92)
314 PF08569 Mo25: Mo25-like; Int 73.3 1.2E+02 0.0025 31.3 24.8 194 131-359 76-284 (335)
315 PF09324 DUF1981: Domain of un 72.5 18 0.0004 28.3 6.6 69 648-718 16-84 (86)
316 cd03569 VHS_Hrs_Vps27p VHS dom 72.5 20 0.00043 31.4 7.6 79 128-208 38-117 (142)
317 KOG1877 Putative transmembrane 72.5 1.4E+02 0.003 34.5 15.5 227 173-416 55-306 (819)
318 PF03542 Tuberin: Tuberin; In 72.4 1.3E+02 0.0027 31.3 14.8 90 576-678 212-302 (356)
319 PF11701 UNC45-central: Myosin 72.2 15 0.00032 33.0 6.9 127 143-283 17-153 (157)
320 KOG1848 Uncharacterized conser 72.0 2.5E+02 0.0053 34.5 24.1 154 101-256 851-1034(1610)
321 cd03565 VHS_Tom1 VHS domain fa 71.1 72 0.0016 27.9 11.9 77 607-683 37-119 (141)
322 PF14868 DUF4487: Domain of un 70.5 1.8E+02 0.0039 32.3 21.5 57 344-400 495-556 (559)
323 KOG2199 Signal transducing ada 69.7 50 0.0011 33.7 10.2 78 605-682 42-121 (462)
324 KOG3036 Protein involved in ce 69.1 51 0.0011 31.4 9.5 75 128-204 120-196 (293)
325 COG4912 Predicted DNA alkylati 67.1 41 0.00089 31.5 8.5 83 351-441 101-185 (222)
326 PF12397 U3snoRNP10: U3 small 67.1 31 0.00067 29.2 7.5 74 363-441 2-76 (121)
327 PF14961 BROMI: Broad-minded p 64.7 1.4E+02 0.003 36.0 13.8 75 130-209 160-235 (1296)
328 PF03542 Tuberin: Tuberin; In 64.4 1.8E+02 0.004 30.2 15.1 94 189-289 210-303 (356)
329 KOG2038 CAATT-binding transcri 64.3 2.6E+02 0.0056 31.8 30.9 122 346-487 244-371 (988)
330 KOG2229 Protein required for a 63.9 2.1E+02 0.0046 30.7 22.6 129 144-285 33-162 (616)
331 PF12074 DUF3554: Domain of un 63.9 1.9E+02 0.0041 30.1 20.2 197 89-290 19-236 (339)
332 KOG3036 Protein involved in ce 63.7 12 0.00026 35.3 4.5 71 794-866 125-195 (293)
333 PF14668 RICTOR_V: Rapamycin-i 63.0 29 0.00063 26.1 5.6 56 383-441 3-60 (73)
334 cd00197 VHS_ENTH_ANTH VHS, ENT 61.8 93 0.002 26.0 9.4 76 127-203 33-113 (115)
335 PLN03205 ATR interacting prote 61.2 97 0.0021 31.7 10.4 138 110-248 302-446 (652)
336 cd03572 ENTH_epsin_related ENT 60.3 79 0.0017 26.7 8.4 72 217-288 36-118 (122)
337 PF14961 BROMI: Broad-minded p 60.2 1.8E+02 0.004 35.0 13.8 75 176-254 163-237 (1296)
338 PF14668 RICTOR_V: Rapamycin-i 60.0 18 0.0004 27.1 4.2 56 625-681 4-60 (73)
339 KOG2973 Uncharacterized conser 59.9 94 0.002 30.9 9.8 67 222-290 6-72 (353)
340 KOG2199 Signal transducing ada 59.6 97 0.0021 31.8 10.1 104 374-490 19-122 (462)
341 PHA01351 putative minor struct 59.6 2.9E+02 0.0063 30.8 18.8 112 629-744 121-239 (1070)
342 PF14868 DUF4487: Domain of un 59.3 2.9E+02 0.0063 30.8 22.7 282 346-640 245-555 (559)
343 KOG0929 Guanine nucleotide exc 58.4 4.7E+02 0.01 32.9 18.8 132 612-745 1178-1322(1514)
344 cd00197 VHS_ENTH_ANTH VHS, ENT 58.4 1.1E+02 0.0024 25.6 10.0 73 605-677 34-113 (115)
345 COG5537 IRR1 Cohesin [Cell div 57.6 3E+02 0.0065 30.4 15.5 98 97-204 280-385 (740)
346 KOG2011 Sister chromatid cohes 57.4 4.1E+02 0.009 31.9 23.7 324 504-868 93-436 (1048)
347 cd06561 AlkD_like A new struct 57.3 65 0.0014 30.1 8.7 65 370-442 108-173 (197)
348 PF01465 GRIP: GRIP domain; I 56.2 26 0.00056 23.5 3.9 35 88-122 3-37 (46)
349 PF11919 DUF3437: Domain of un 55.8 37 0.00081 26.8 5.4 56 425-487 4-59 (90)
350 PF08146 BP28CT: BP28CT (NUC21 55.7 1.5E+02 0.0033 26.4 14.1 81 575-660 35-119 (153)
351 KOG2973 Uncharacterized conser 55.1 54 0.0012 32.5 7.4 103 372-486 8-111 (353)
352 PF10441 Urb2: Urb2/Npa2 famil 54.0 2E+02 0.0044 27.6 11.5 47 681-727 145-191 (223)
353 PF14911 MMS22L_C: S-phase gen 52.6 2.9E+02 0.0064 28.8 17.9 274 454-742 65-349 (373)
354 KOG2085 Serine/threonine prote 52.5 3E+02 0.0064 28.8 15.1 89 390-486 322-414 (457)
355 PF14225 MOR2-PAG1_C: Cell mor 51.6 2.5E+02 0.0055 27.7 20.5 191 500-727 60-259 (262)
356 PF07539 DRIM: Down-regulated 51.3 63 0.0014 28.2 6.7 47 2-48 15-62 (141)
357 COG5369 Uncharacterized conser 51.1 3.6E+02 0.0078 29.4 14.4 112 608-722 431-545 (743)
358 KOG1087 Cytosolic sorting prot 50.2 1.5E+02 0.0032 32.0 10.4 84 608-692 38-124 (470)
359 KOG1877 Putative transmembrane 50.1 4.7E+02 0.01 30.4 24.6 247 477-747 76-352 (819)
360 PF11935 DUF3453: Domain of un 49.5 2.6E+02 0.0056 27.2 13.0 122 100-227 1-161 (239)
361 smart00567 EZ_HEAT E-Z type HE 47.5 41 0.00089 19.7 3.6 15 381-395 1-15 (30)
362 PF06685 DUF1186: Protein of u 47.5 1.6E+02 0.0034 28.8 9.3 35 693-727 113-147 (249)
363 PF11841 DUF3361: Domain of un 47.4 2.1E+02 0.0045 25.6 10.7 97 191-289 32-131 (160)
364 PF05327 RRN3: RNA polymerase 47.3 4.7E+02 0.01 29.6 27.0 112 422-555 86-212 (563)
365 PF08713 DNA_alkylation: DNA a 47.2 2.5E+02 0.0055 26.5 14.9 150 17-205 33-184 (213)
366 KOG2005 26S proteasome regulat 45.9 4.8E+02 0.01 29.3 14.1 287 365-721 413-703 (878)
367 smart00755 Grip golgin-97, Ran 45.9 45 0.00097 22.4 3.8 34 89-123 3-36 (46)
368 PHA01351 putative minor struct 45.4 4.9E+02 0.011 29.2 18.3 47 811-862 230-280 (1070)
369 PF11841 DUF3361: Domain of un 43.9 1.8E+02 0.004 25.9 8.3 100 665-777 32-132 (160)
370 KOG2213 Apoptosis inhibitor 5/ 41.5 4.3E+02 0.0093 27.5 18.2 55 422-487 36-91 (460)
371 COG5231 VMA13 Vacuolar H+-ATPa 38.9 56 0.0012 32.4 4.8 72 131-205 356-428 (432)
372 PF04078 Rcd1: Cell differenti 38.7 3.9E+02 0.0084 26.2 13.7 96 106-204 110-217 (262)
373 PF10350 DUF2428: Putative dea 38.5 4E+02 0.0086 26.3 14.8 138 606-743 94-249 (255)
374 cd00872 PI3Ka_I Phosphoinositi 37.9 48 0.001 30.1 4.0 77 408-509 38-114 (171)
375 COG5101 CRM1 Importin beta-rel 37.9 6.2E+02 0.013 28.3 56.0 82 405-487 566-649 (1053)
376 PF11707 Npa1: Ribosome 60S bi 37.7 3.3E+02 0.007 28.2 10.7 108 610-719 58-184 (330)
377 KOG3723 PH domain protein Melt 36.9 6E+02 0.013 27.8 18.3 74 581-668 182-255 (851)
378 KOG1087 Cytosolic sorting prot 36.7 3.6E+02 0.0077 29.3 10.7 104 99-209 12-116 (470)
379 PF10193 Telomere_reg-2: Telom 35.3 2.1E+02 0.0045 24.0 7.1 70 663-733 18-90 (114)
380 PF14676 FANCI_S2: FANCI solen 35.2 3.3E+02 0.0072 24.4 10.3 121 111-244 37-157 (158)
381 PF04499 SAPS: SIT4 phosphatas 34.8 6.5E+02 0.014 27.6 14.5 17 761-777 214-230 (475)
382 COG5369 Uncharacterized conser 34.7 5E+02 0.011 28.3 11.0 70 793-866 431-500 (743)
383 PF06685 DUF1186: Protein of u 34.0 4.6E+02 0.01 25.7 15.3 15 763-777 129-143 (249)
384 cd03562 CID CID (CTD-Interacti 33.7 2.3E+02 0.005 23.5 7.4 71 130-203 36-106 (114)
385 PF03130 HEAT_PBS: PBS lyase H 33.5 46 0.001 19.1 2.2 26 19-47 1-26 (27)
386 PF07539 DRIM: Down-regulated 33.5 2E+02 0.0043 25.2 7.0 43 218-263 16-58 (141)
387 PF04078 Rcd1: Cell differenti 33.1 40 0.00086 32.7 2.9 71 794-866 96-166 (262)
388 KOG4500 Rho/Rac GTPase guanine 32.7 6.2E+02 0.014 26.8 33.9 112 129-250 5-118 (604)
389 PF12726 SEN1_N: SEN1 N termin 31.7 9.1E+02 0.02 28.4 38.9 208 383-620 98-327 (727)
390 PF08045 CDC14: Cell division 31.6 5.1E+02 0.011 25.5 12.1 70 132-204 134-206 (257)
391 KOG3678 SARM protein (with ste 31.1 3.4E+02 0.0074 28.7 9.1 151 95-249 183-337 (832)
392 COG1698 Uncharacterized protei 30.1 2.7E+02 0.0059 21.8 6.2 29 5-33 18-49 (93)
393 KOG3687 Tuberin - Rap/ran-GTPa 28.1 1.1E+03 0.024 28.2 26.1 77 620-699 442-522 (1697)
394 PF10193 Telomere_reg-2: Telom 27.8 3.6E+02 0.0079 22.5 8.3 98 612-719 7-112 (114)
395 PF04499 SAPS: SIT4 phosphatas 27.7 5E+02 0.011 28.5 10.4 57 792-849 61-129 (475)
396 cd00872 PI3Ka_I Phosphoinositi 27.6 2.1E+02 0.0045 26.1 6.3 47 15-65 51-97 (171)
397 cd07354 HN_L-delphilin-R1_like 27.1 2.8E+02 0.0061 21.2 5.7 46 3-48 6-52 (80)
398 COG5231 VMA13 Vacuolar H+-ATPa 26.9 1.2E+02 0.0027 30.2 5.0 34 89-122 396-429 (432)
399 PF12726 SEN1_N: SEN1 N termin 26.7 1.1E+03 0.024 27.7 40.3 31 219-249 120-150 (727)
400 cd00870 PI3Ka_III Phosphoinosi 26.2 2.7E+02 0.0059 25.2 6.8 13 52-64 91-103 (166)
401 cd06561 AlkD_like A new struct 26.2 3.2E+02 0.007 25.4 8.0 75 652-734 108-182 (197)
402 cd00864 PI3Ka Phosphoinositide 24.3 3E+02 0.0064 24.5 6.7 12 52-63 84-95 (152)
403 smart00145 PI3Ka Phosphoinosit 24.3 1.3E+02 0.0028 27.8 4.6 77 408-509 43-119 (184)
404 PF14222 MOR2-PAG1_N: Cell mor 24.1 1.1E+03 0.023 26.7 22.3 163 663-848 144-321 (552)
405 cd00864 PI3Ka Phosphoinositide 23.5 1.5E+02 0.0032 26.4 4.6 76 409-509 39-114 (152)
406 PF04147 Nop14: Nop14-like fam 23.4 6.1E+02 0.013 30.4 10.9 60 785-848 557-617 (840)
407 PF10487 Nup188: Nucleoporin s 22.9 1.4E+03 0.031 27.7 25.9 96 381-488 515-617 (931)
408 KOG4346 Uncharacterized conser 22.8 1.2E+03 0.025 26.7 13.0 284 503-822 507-836 (849)
409 KOG1822 Uncharacterized conser 22.7 1.8E+03 0.04 28.9 59.2 193 39-250 53-250 (2067)
410 PF06371 Drf_GBD: Diaphanous G 22.6 2E+02 0.0044 26.4 5.8 55 381-438 130-186 (187)
411 PF11707 Npa1: Ribosome 60S bi 22.5 8.7E+02 0.019 25.1 15.7 109 176-286 58-184 (330)
412 cd00870 PI3Ka_III Phosphoinosi 21.4 1.4E+02 0.003 27.0 4.1 31 470-509 91-121 (166)
413 PLN03205 ATR interacting prote 21.1 9.6E+02 0.021 25.0 14.1 112 91-204 322-445 (652)
414 COG5209 RCD1 Uncharacterized p 20.8 3.1E+02 0.0068 25.9 6.1 113 132-246 146-266 (315)
No 1
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-104 Score=800.38 Aligned_cols=852 Identities=50% Similarity=0.814 Sum_probs=792.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhc
Q 002876 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (872)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (872)
|++.++|.+++|||+++|+.|+++|.+++.+|++.|+..|.++|.+.+.+...|..|++.|||.+..+.+..+.....+|
T Consensus 1 ~~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRW 80 (859)
T KOG1241|consen 1 MELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRW 80 (859)
T ss_pred CcHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCCh-hHHHHHHHHHHHhhhh
Q 002876 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPP-HTKQATLETLGYICEE 161 (872)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~-~~r~~al~~l~~i~~~ 161 (872)
..++.|.|+++|+.+++.|.++.+..++.|+++++.|+..+.|++.||++++.+.....++.+ .+|++++++++++|++
T Consensus 81 l~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 81 LQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred HcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999999999987755 4899999999999999
Q ss_pred ccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 002876 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (872)
Q Consensus 162 ~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~ 241 (872)
.+|+.+ ..+.+.++..++++++..+++..||.+|+++|.+.+.+...+|..+.+++.|++++++.++.++.+++.+++.
T Consensus 161 i~pevl-~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ 239 (859)
T KOG1241|consen 161 IDPEVL-EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQ 239 (859)
T ss_pred CCHHHH-HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHH
Confidence 989877 7889999999999998778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhHhhHHH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhh
Q 002876 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPV 320 (872)
Q Consensus 242 ~l~~l~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (872)
||..|...||+++.+|+.+ ++...+..+.+++++|..+++|||+++|+.+.++..+|....+......+++|.+..++.
T Consensus 240 ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~ 319 (859)
T KOG1241|consen 240 CLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQD 319 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhH
Confidence 9999999999999999986 999999999999999999999999999999999888776332222211367899999999
Q ss_pred HHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCC
Q 002876 321 LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSP 400 (872)
Q Consensus 321 l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~ 400 (872)
++|.+++.|.++++|+|+|+ |++.++|+.||..+++..|++++|+++||+.+++.+++|+.|+++.++||++.++..+
T Consensus 320 v~P~Ll~~L~kqde~~d~Dd--Wnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~ 397 (859)
T KOG1241|consen 320 VVPVLLELLTKQDEDDDDDD--WNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP 397 (859)
T ss_pred hhHHHHHHHHhCCCCccccc--CcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence 99999999999887766544 9999999999999999999999999999999999999999999999999999999988
Q ss_pred CcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHH
Q 002876 401 EKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGA 480 (872)
Q Consensus 401 ~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~a 480 (872)
..+.+.+++.+|.++..+ .|++-.||.++.|++|+++++++. ...+..+++.+++.++.++.|+|+|..++||+
T Consensus 398 ~~Lt~iV~qalp~ii~lm-~D~sl~VkdTaAwtlgrI~d~l~e-----~~~n~~~l~~~l~~l~~gL~DePrva~N~CWA 471 (859)
T KOG1241|consen 398 DKLTPIVIQALPSIINLM-SDPSLWVKDTAAWTLGRIADFLPE-----AIINQELLQSKLSALLEGLNDEPRVASNVCWA 471 (859)
T ss_pred hhhhHHHhhhhHHHHHHh-cCchhhhcchHHHHHHHHHhhchh-----hcccHhhhhHHHHHHHHHhhhCchHHHHHHHH
Confidence 889999999999999999 999999999999999999999874 45678899999999999999999999999999
Q ss_pred HHHHHHhcccCC---CCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHH
Q 002876 481 LYFLAQGFEDAI---SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMEL 557 (872)
Q Consensus 481 l~~l~~~~~~~~---~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 557 (872)
+..|++.+.+.. ...+...|+++.|+..|++.....+..+.++|..++++|+.+++.+++...+.+..++..++..+
T Consensus 472 f~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl 551 (859)
T KOG1241|consen 472 FISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKL 551 (859)
T ss_pred HHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 999998764431 12345668999999999999988775578999999999999999999999999999999999999
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhc-cccchhhHHHHHHHHHH
Q 002876 558 HQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI-RSATAHEEAMLAIGALA 636 (872)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~ 636 (872)
.++++....+.+|+.....++..+|.+|+.+.++++++ +.++.+++|..+++++++ .+..+.+.|+.+++.++
T Consensus 552 ~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~------~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~ 625 (859)
T KOG1241|consen 552 DQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSD------IREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLA 625 (859)
T ss_pred HHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcccc------chhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHH
Confidence 99998778888999999999999999999999999987 899999999999999998 46668999999999999
Q ss_pred HHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHH
Q 002876 637 YATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSC 716 (872)
Q Consensus 637 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~ 716 (872)
.++|+.|.+|++.+.|+|...|++..+..|...+++++|++++.++.++.||.+.++..|++.|+++..++++|+.++++
T Consensus 626 ~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~ 705 (859)
T KOG1241|consen 626 ESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSV 705 (859)
T ss_pred HHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHH
Q 002876 717 FGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQ 796 (872)
Q Consensus 717 l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 796 (872)
+|+|+.++|.+|.+|++.+++.+..+-+.. ++..|.++.+|+..+|+++++++.|++.+++.......+.||++.|+.
T Consensus 706 FgDIAlaIg~~F~~Yl~~vm~llq~as~~~--~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~s 783 (859)
T KOG1241|consen 706 FGDIALAIGADFEPYLEMVMPLLQQASSVQ--TDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIIS 783 (859)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcc--CCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHH
Confidence 999999999999999999999999887444 334677789999999999999999999999966566788999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhc
Q 002876 797 FLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISKAIS 871 (872)
Q Consensus 797 ~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (872)
++.++-.+++.++.+..+|+++||+++..+|+...+++..++||..+|.+.+++.+...|..|.|++.+|-|.++
T Consensus 784 fi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~A~wa~e~ikr~~~ 858 (859)
T KOG1241|consen 784 FIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDLARWATEEIKRQIS 858 (859)
T ss_pred HHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhc
Confidence 999999987778999999999999999999999999999888999999999999999999999999999998764
No 2
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.7e-81 Score=611.99 Aligned_cols=845 Identities=32% Similarity=0.478 Sum_probs=734.5
Q ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhc
Q 002876 4 EVTQILLN-AQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (872)
Q Consensus 4 ~l~~~l~~-~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (872)
+|..+.++ .+|||+++|..||.+|.+++..++..|+..|.+.+.+.+..++.|..|+++|||.+..+.+..+......|
T Consensus 5 ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW 84 (858)
T COG5215 5 EFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRW 84 (858)
T ss_pred HHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhh
Confidence 56666666 38999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCCh-hHHHHHHHHHHHhhhh
Q 002876 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPP-HTKQATLETLGYICEE 161 (872)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~-~~r~~al~~l~~i~~~ 161 (872)
..++.|.|+++|...++.|.++.+...+.++++++.|++.+.|+..||+++..+.....++.+ ..+..++.+++++|+.
T Consensus 85 ~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces 164 (858)
T COG5215 85 LGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES 164 (858)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999998887654 6788899999999999
Q ss_pred ccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 002876 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (872)
Q Consensus 162 ~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~ 241 (872)
.+|+.+ ....+.++-.+..+-...+++..+|.+|+++|...+.++.++|..+.+++.+++++++..+.++.++..+++.
T Consensus 165 ~~Pe~l-i~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafg 243 (858)
T COG5215 165 EAPEDL-IQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFG 243 (858)
T ss_pred cCHHHH-HHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHH
Confidence 878666 4555666666665554448899999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhHhhHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhh
Q 002876 242 CLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPV 320 (872)
Q Consensus 242 ~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (872)
||..+...|++++.+|++ -+..++...+.++++++..+++|||+.+|+.+.+..-+.+ .-+..+.+.++|.......
T Consensus 244 Cl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~--~~pe~p~qn~~fa~aav~d 321 (858)
T COG5215 244 CLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDK--YLPEVPAQNHGFARAAVAD 321 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHh--hcccCchhhcchHHHHHHH
Confidence 999999999999999998 4667777888999999999999999999998755432211 0011112355788888889
Q ss_pred HHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCC
Q 002876 321 LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSP 400 (872)
Q Consensus 321 l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~ 400 (872)
++|.+++.++++++|.++| +|++.++|..||..+++..|+.++..++.|+.+++.+++|..|+++.++||++.++...
T Consensus 322 vlP~lL~LL~~q~ed~~~D--dWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~ 399 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGD--DWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCE 399 (858)
T ss_pred HHHHHHHHHHhcCCCcccc--ccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccH
Confidence 9999999999988877654 49999999999999999999999999999999999999999999999999999999877
Q ss_pred CcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHH
Q 002876 401 EKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGA 480 (872)
Q Consensus 401 ~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~a 480 (872)
..+.+++++.+|.+...+ +|+.-.|+.+++||+|+++.+.+. ......++...+...+.++.|+|++..+++|.
T Consensus 400 ~~lT~~V~qalp~i~n~m-~D~~l~vk~ttAwc~g~iad~va~-----~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~ 473 (858)
T COG5215 400 DCLTKIVPQALPGIENEM-SDSCLWVKSTTAWCFGAIADHVAM-----IISPCGHLVLEVSASLIGLMDCPFRSINCSWR 473 (858)
T ss_pred HHHHhhHHhhhHHHHHhc-ccceeehhhHHHHHHHHHHHHHHH-----hcCccccccHHHHHHHhhhhccchHHhhhHHH
Confidence 778889999999999999 999999999999999999998863 22345678888999999999999999999999
Q ss_pred HHHHHHhcccCC-CCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHH
Q 002876 481 LYFLAQGFEDAI-SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQ 559 (872)
Q Consensus 481 l~~l~~~~~~~~-~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 559 (872)
..++++++.+.. ..++.+.++++.|+..|+.......+ +.+.|..++.+|++++..+++...+.+..++..+.+.+.+
T Consensus 474 ~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~N-e~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~ 552 (858)
T COG5215 474 KENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALN-ESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDE 552 (858)
T ss_pred HHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 999999876541 23677888899999999887765543 6788999999999999999999999999999999999998
Q ss_pred HHhh--hcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccc-cchhhHHHHHHHHHH
Q 002876 560 TLEA--QKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRS-ATAHEEAMLAIGALA 636 (872)
Q Consensus 560 ~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~~~a~~~l~~l~ 636 (872)
+++. .....+|+....+++...+++|..++++.+++ +.+..+++|..++++|.+.+ ..+.+.++.+++.+.
T Consensus 553 ~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~------ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~ 626 (858)
T COG5215 553 CISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRD------IEDVEDQLMELFIRILESTKPTTAFGDVYTAISALS 626 (858)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC------cccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHH
Confidence 8762 33455666667788999999999999999987 88899999999999999984 456789999999999
Q ss_pred HHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHH
Q 002876 637 YATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSC 716 (872)
Q Consensus 637 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~ 716 (872)
.++++.|..|.+.++|++.+.++. .+..+...+++++|++++.++.+|.+|.+.++..|.++++++..++++|+.++++
T Consensus 627 ~sl~e~Fe~y~~~fiPyl~~aln~-~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSv 705 (858)
T COG5215 627 TSLEERFEQYASKFIPYLTRALNC-TDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSV 705 (858)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHH
Confidence 999999999999999999999964 4568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHH
Q 002876 717 FGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQ 796 (872)
Q Consensus 717 l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 796 (872)
+|+|+..+|.+|.+|++.++-.+..+-+.++ .+++-...||...++..+..++.++..+.+. .++.+.||+..+++
T Consensus 706 FgDIAlaiga~F~~YL~~im~L~qqas~~~p--~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~n--r~~~v~Pyv~sif~ 781 (858)
T COG5215 706 FGDIALAIGANFESYLDMIMMLFQQASELDP--HSDEVYVDDYRKNAVQLVNCAYVGIGDSSKN--RVRSVLPYVISIFH 781 (858)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccCC--CCCceeHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHhhhHHHHHHH
Confidence 9999999999999999999988887655442 2223334678888889999999999887653 36778999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHhc
Q 002876 797 FLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSS-DDHMIKESAEWAKLAISKAIS 871 (872)
Q Consensus 797 ~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 871 (872)
.+-.+..|+..++..-++|++++|+++..+|.+-.++....+||..+|+..++- ....-|..+.|+..++.|..+
T Consensus 782 ~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~~~~~dWv~d~l~~~~~ki~sqqtkD~aRwa~eqvkrqlr 857 (858)
T COG5215 782 KIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKFGLDEDWVKDFLYGMMKKISSQQTKDSARWAAEQVKRQLR 857 (858)
T ss_pred HHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhhccchHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHhc
Confidence 999999988777777789999999999999977444444445999999997742 334567788899888877643
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-73 Score=567.48 Aligned_cols=737 Identities=22% Similarity=0.354 Sum_probs=630.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcC-CCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVND-EKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~-~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
.|+.++|++..|||+++|+.+...+.++... |+|..+|+.+|.+. +.+..+|..|+.+|||.++. .
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~--pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~-----------~ 79 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLF--PDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRG-----------H 79 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcc--cchhceeeEEEecccccchhHHHHhhhhHhccccc-----------c
Confidence 3789999999999999999999999999887 99999999988653 55788999999999999985 4
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002876 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (872)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~ 161 (872)
|..++++...++|..+++.+.++++.+|...+.++++|+....- ..||+++|.|.+++.+++....++|+.+|++||++
T Consensus 80 ~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~-~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcED 158 (885)
T KOG2023|consen 80 YNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGL-QHWPELLPQLCELLDSPDYNTCEGAFGALQKICED 158 (885)
T ss_pred ccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeeccccc-ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhh
Confidence 66788999999999999999999999999999999999987744 69999999999999999999999999999999998
Q ss_pred ccccccc----hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHH
Q 002876 162 VSSDAVE----QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (872)
Q Consensus 162 ~~~~~l~----~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~ 237 (872)
. ++.++ ..-++.++|.+++..+ ++++.+|..|+.|++.++-.....+. ...+.+++.++.+.+|++++||+
T Consensus 159 s-a~~lds~~~~rpl~~mipkfl~f~~--h~spkiRs~A~~cvNq~i~~~~qal~--~~iD~Fle~lFalanD~~~eVRk 233 (885)
T KOG2023|consen 159 S-AQFLDSDVLTRPLNIMIPKFLQFFK--HPSPKIRSHAVGCVNQFIIIQTQALY--VHIDKFLEILFALANDEDPEVRK 233 (885)
T ss_pred h-HHHHhhhcccCchHHhHHHHHHHHh--CCChhHHHHHHhhhhheeecCcHHHH--HHHHHHHHHHHHHccCCCHHHHH
Confidence 7 55543 3568889999999999 88999999999999997743332222 12378999999999999999999
Q ss_pred HHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhh
Q 002876 238 AAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA 317 (872)
Q Consensus 238 ~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (872)
..|..|.-+.+..++.+.||+..++++++...++.+++|...|+|||.++++.. -+.+...++
T Consensus 234 ~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp-----------------i~~~~L~p~ 296 (885)
T KOG2023|consen 234 NVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP-----------------ICKEVLQPY 296 (885)
T ss_pred HHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc-----------------CcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999743 155778999
Q ss_pred hhhHHHHHHHHHhcccCC----------------------------------------cc----cCC---ccchHhHHHH
Q 002876 318 LPVLVPLLLETLLKQEED----------------------------------------QD----QDE---GAWNIAMAGG 350 (872)
Q Consensus 318 l~~l~~~l~~~l~~~~~d----------------------------------------~~----~~~---~~~~~r~~a~ 350 (872)
++.++|++++.|.+.++| ++ ||+ .+|+.|++++
T Consensus 297 l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSA 376 (885)
T KOG2023|consen 297 LDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSA 376 (885)
T ss_pred HHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccH
Confidence 999999999876642211 00 111 2599999999
Q ss_pred HHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHH
Q 002876 351 TCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTT 430 (872)
Q Consensus 351 ~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a 430 (872)
.+|+.++..+|++++|.++|++.+.+.+++|.+|++++.++|++++|+. +.+.++++.++|++++.+ +|..|.||..+
T Consensus 377 AaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM-~g~~p~LpeLip~l~~~L-~DKkplVRsIT 454 (885)
T KOG2023|consen 377 AALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM-QGFVPHLPELIPFLLSLL-DDKKPLVRSIT 454 (885)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh-hhcccchHHHHHHHHHHh-ccCccceeeee
Confidence 9999999999999999999999999999999999999999999999995 889999999999999999 99999999999
Q ss_pred HHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHH
Q 002876 431 AWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQAL 509 (872)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l 509 (872)
||++++++.|...+ -..+|+.+++..+++.+-| +.+|+++||.++.++-+.. ...+.||+..|+..+
T Consensus 455 CWTLsRys~wv~~~------~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A------~~eLVp~l~~IL~~l 522 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQD------SRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA------GEELVPYLEYILDQL 522 (885)
T ss_pred eeeHhhhhhhHhcC------ChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc------cchhHHHHHHHHHHH
Confidence 99999999998643 2568999999999988777 7999999999999998875 678999999999999
Q ss_pred HHhhccCCchhhhhHHHHHHHHHHHHHccccC--cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHH
Q 002876 510 LTVTHREDAGESRLRTAAYETLNEVVRCSTDE--TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQV 587 (872)
Q Consensus 510 ~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 587 (872)
...++.+. ..++. ..+++++++++.+|.. -+.|+..++|++++.|... +++|++.+ -+++|++.
T Consensus 523 ~~af~kYQ--~KNLl-ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~l------sd~DKdLf-----PLLEClSs 588 (885)
T KOG2023|consen 523 VFAFGKYQ--KKNLL-ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELL------SDSDKDLF-----PLLECLSS 588 (885)
T ss_pred HHHHHHHh--hccee-hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhc------CcccchHH-----HHHHHHHH
Confidence 99998876 34444 6799999999999864 5678999999999999875 46777765 38999999
Q ss_pred HHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcc----------------ccchhhHHHHHHHHHHHHhhhhhHhhhHH--
Q 002876 588 IIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR----------------SATAHEEAMLAIGALAYATGQDFLKYMPE-- 649 (872)
Q Consensus 588 l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~----------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-- 649 (872)
++..++.. |.||+++++++.+.+++.. +.+.--.++..++.++.++|..+.+.+.+
T Consensus 589 ia~AL~~g------F~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~sn 662 (885)
T KOG2023|consen 589 IASALGVG------FLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSN 662 (885)
T ss_pred HHHHHhcc------ccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhcc
Confidence 99999988 9999999999998887731 12233357889999999999999887754
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchH
Q 002876 650 FYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFE 729 (872)
Q Consensus 650 i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~ 729 (872)
+...+..++++. -++||+.++.++|++...+.+.+.|++.++++.+...+... ..++-.+|.|++|.|+..+|.++.
T Consensus 663 l~~lll~C~~D~-~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~--~isv~nNA~WAiGeia~k~g~~~~ 739 (885)
T KOG2023|consen 663 LLDLLLQCLQDE-VPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPE--NISVCNNAIWAIGEIALKMGLKMK 739 (885)
T ss_pred HHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChh--hchHHHHHHHHHHHHHHHhchhhh
Confidence 888999988864 56999999999999999999999999999999998766555 556778899999999999999999
Q ss_pred HhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCH
Q 002876 730 KYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDD 809 (872)
Q Consensus 730 ~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 809 (872)
+|+..++..|...++.+.. ...+-++..-+++.+-.. .++.+.|+++.++......+.. -.+.
T Consensus 740 ~~v~~vl~~L~~iin~~~~-----------~~tllENtAITIGrLg~~-----~Pe~vAp~l~~f~~pWc~sl~~-i~Dn 802 (885)
T KOG2023|consen 740 QYVSPVLEDLITIINRQNT-----------PKTLLENTAITIGRLGYI-----CPEEVAPHLDSFMRPWCTSLRN-IDDN 802 (885)
T ss_pred hHHHHHHHHHHHHhcccCc-----------hHHHHHhhhhhhhhhhcc-----CHHhcchhHHHHHHHHHHHhcc-cccc
Confidence 9999999999998876521 123444444444444332 6788999999999998877775 4566
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 002876 810 VVTKTAIGVLGDLADTLGSN 829 (872)
Q Consensus 810 ~v~~~a~~~l~~i~~~~g~~ 829 (872)
+-+..|+.=++.++..-+.+
T Consensus 803 eEK~sAFrG~c~mi~vNp~~ 822 (885)
T KOG2023|consen 803 EEKESAFRGLCNMINVNPSG 822 (885)
T ss_pred hhHHHHHHHHHHheeeCchh
Confidence 77888887777777655433
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-67 Score=562.36 Aligned_cols=791 Identities=21% Similarity=0.328 Sum_probs=636.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 2 SAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 2 ~~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
..+|.++++++.+||+++|++|++.|+....+ +..+..|.+++.. +.++++|++|++++|+.+.+ .
T Consensus 3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~--~~~l~~L~~i~~~-~~~p~~Rq~aaVl~Rkl~~~-----------~ 68 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNEVRRQAEEALETLAKT--EPLLPALAHILAT-SADPQVRQLAAVLLRKLLTK-----------H 68 (1075)
T ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHhhcc--cchHHHHHHHHhc-CCChHHHHHHHHHHHHHHHH-----------H
Confidence 46799999999999999999999999976655 4488888888876 77999999999999999874 5
Q ss_pred ccCCChHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002876 82 WLSLDSSVKAQIKSFILKTLSSP-AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (872)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~-~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~ 160 (872)
|..++.+.++.||+.++..+.++ .+.||+..|.+++.+++.++|. .||++++.|+++.+++++..|+.|+.+|..+..
T Consensus 69 w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~ 147 (1075)
T KOG2171|consen 69 WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPE 147 (1075)
T ss_pred hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhh
Confidence 77899999999999999998877 5899999999999999999994 999999999999999999999999999999988
Q ss_pred hccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhH-------HHHHHHHHHhhcCCCH
Q 002876 161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMER-------DYIMRVVCEATLSPEV 233 (872)
Q Consensus 161 ~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~-------~~il~~l~~~~~~~~~ 233 (872)
.. +..+ ++++..+.+.+.+.+. |++..||..|+++++.++.+... +...+ +.+++++...+.+++.
T Consensus 148 ~~-~~~~-~~~~~~l~~lf~q~~~--d~s~~vr~~a~rA~~a~~~~~~~---~~~~~~~~~~llP~~l~vl~~~i~~~d~ 220 (1075)
T KOG2171|consen 148 TF-GNTL-QPHLDDLLRLFSQTMT--DPSSPVRVAAVRALGAFAEYLEN---NKSEVDKFRDLLPSLLNVLQEVIQDGDD 220 (1075)
T ss_pred hh-cccc-chhHHHHHHHHHHhcc--CCcchHHHHHHHHHHHHHHHhcc---chHHHHHHHHHhHHHHHHhHhhhhccch
Confidence 87 5666 7899999999999999 77777999999999998876641 11111 3456666777778888
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchH
Q 002876 234 KIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE--DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCF 311 (872)
Q Consensus 234 ~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (872)
+....++++|..++...|+.+.+++..++++.+....+ -++.+|..|++++.++++..+....+
T Consensus 221 ~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~-------------- 286 (1075)
T KOG2171|consen 221 DAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKK-------------- 286 (1075)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhh--------------
Confidence 88999999999999999999999999999999998865 56789999999999999876554433
Q ss_pred hHHHhhhhhHHHHHHHHHhcccCC-------cccCCccchHhHHHHHHHHHHHHHcC-CcchhchHHHHHhhhcCcchhh
Q 002876 312 YFIKHALPVLVPLLLETLLKQEED-------QDQDEGAWNIAMAGGTCLGLVARTVG-DDIVPLVMPFVEENITKQEWRQ 383 (872)
Q Consensus 312 ~~~~~~l~~l~~~l~~~l~~~~~d-------~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~~~~~~~~~ 383 (872)
..++...+++.++..|+..++| +.++++.-+....|.+++++++..+| +.++|.+++.+...+.+++|+.
T Consensus 287 --~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~ 364 (1075)
T KOG2171|consen 287 --LALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKE 364 (1075)
T ss_pred --chhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHH
Confidence 2346777889999888765444 11222223456778999999999985 7889999999999999999999
Q ss_pred hHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHH
Q 002876 384 REAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVL 463 (872)
Q Consensus 384 r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l 463 (872)
|+|++++++.+++|+. +.+...++.+++.++.++ +|+||+||++|+.++|+++..++ |.+...+.+.+.+.+
T Consensus 365 R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l-~DphprVr~AA~naigQ~stdl~------p~iqk~~~e~l~~aL 436 (1075)
T KOG2171|consen 365 RHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGL-NDPHPRVRYAALNAIGQMSTDLQ------PEIQKKHHERLPPAL 436 (1075)
T ss_pred HHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHhhhhhhc------HHHHHHHHHhccHHH
Confidence 9999999999999995 888899999999999999 99999999999999999999986 456677777888899
Q ss_pred HHhccC--ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccC
Q 002876 464 LQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE 541 (872)
Q Consensus 464 ~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~ 541 (872)
+..+++ +++|+.+|+.++.+|.+.+. ++.+.||++.+++..+..+..+. .+.+++.+..+|+.++...+..
T Consensus 437 ~~~ld~~~~~rV~ahAa~al~nf~E~~~-----~~~l~pYLd~lm~~~l~~L~~~~--~~~v~e~vvtaIasvA~AA~~~ 509 (1075)
T KOG2171|consen 437 IALLDSTQNVRVQAHAAAALVNFSEECD-----KSILEPYLDGLMEKKLLLLLQSS--KPYVQEQAVTAIASVADAAQEK 509 (1075)
T ss_pred HHHhcccCchHHHHHHHHHHHHHHHhCc-----HHHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhhh
Confidence 999886 68999999999999999875 78999999999996666665544 6889999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHH---Hh
Q 002876 542 TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRV---FA 618 (872)
Q Consensus 542 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~---l~ 618 (872)
+.||++.+||.+...+.+. ++.+ ...+|+..++|++.+....|+.. |.++..++++.+... ..
T Consensus 510 F~pY~d~~Mp~L~~~L~n~--------~~~d-~r~LrgktmEcisli~~AVGke~-----F~~~a~eliqll~~~~~~~~ 575 (1075)
T KOG2171|consen 510 FIPYFDRLMPLLKNFLQNA--------DDKD-LRELRGKTMECLSLIARAVGKEK-----FLPLAEELIQLLLELQGSDQ 575 (1075)
T ss_pred hHhHHHHHHHHHHHHHhCC--------Cchh-hHHHHhhHHHHHHHHHHHhhhhh-----hhHhHHHHHHHHHhhcccch
Confidence 9999999999999988764 2222 23688899999999999999764 999999999999888 34
Q ss_pred ccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCC-----------------------------------h
Q 002876 619 IRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFE-----------------------------------D 663 (872)
Q Consensus 619 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~-----------------------------------~ 663 (872)
+.+...++..+.+++++++.+|++|.||++.++|.+++..+-.+ -
T Consensus 576 ~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsv 655 (1075)
T KOG2171|consen 576 DDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSV 655 (1075)
T ss_pred hhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehh
Confidence 44667889999999999999999999999999999997653100 0
Q ss_pred hhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhcc-------c---------
Q 002876 664 YQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE-------N--------- 727 (872)
Q Consensus 664 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~-------~--------- 727 (872)
.+-+..|+..++.++..++..|.||+.++++..+-.+.-- .+..+|.+++.++..+...... .
T Consensus 656 l~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~-fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~ 734 (1075)
T KOG2171|consen 656 LDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFY-FHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIR 734 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 2346689999999999999999999999998433333322 2667888877776666644211 0
Q ss_pred -----------------------------------hHHhHHHHHHHHHHHHhh-------ccCC-CCCCccHHHH-H---
Q 002876 728 -----------------------------------FEKYLMYAMPMLQSAAEL-------SVHT-SGVDDDMTEY-T--- 760 (872)
Q Consensus 728 -----------------------------------~~~~l~~il~~l~~~l~~-------~~~~-~~~d~~~~~~-~--- 760 (872)
+.+++..+...+...+.. +.+. +++|+|..+. .
T Consensus 735 ~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e 814 (1075)
T KOG2171|consen 735 PALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDE 814 (1075)
T ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhh
Confidence 011222222222111111 1000 1122221111 1
Q ss_pred --HHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCch
Q 002876 761 --NSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSV 838 (872)
Q Consensus 761 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~ 838 (872)
..+-..+.+.+..++.. .+..+.|++..+.+.+...+.. +.... |..+++++++++..+|+...+|...
T Consensus 815 ~d~~ll~~i~~i~~~l~k~-----~k~~f~p~f~~~~p~iv~~l~~-~~~~~-r~~av~~~~d~ie~~~~a~~~~~~~-- 885 (1075)
T KOG2171|consen 815 QDAYLLDAISDILAALAKA-----LKGSFLPFFENFLPLIVKLLKS-KKTVA-RQWAVCIFDDLIEGCGEASAKYKER-- 885 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHH-----ccccccHHHHHHHHHHHHHHhc-CCcHH-HHHHHHHHHHHHHhcccccchHHHH--
Confidence 11233344444445544 4556889999999999999986 34455 9999999999999999999999886
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHh
Q 002876 839 SSKDFLNECLSSDDHMIKESAEWAKLAISKAI 870 (872)
Q Consensus 839 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (872)
+.+.+.++..+.++++|++|+|+.+.+..-.
T Consensus 886 -~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~ 916 (1075)
T KOG2171|consen 886 -FLPLVLEALQDSDPEVRQAAAYGMGVLAQFG 916 (1075)
T ss_pred -HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 7777777888999999999999999876543
No 5
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-35 Score=311.63 Aligned_cols=697 Identities=16% Similarity=0.210 Sum_probs=490.6
Q ss_pred ChhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhh
Q 002876 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (872)
Q Consensus 1 ~~~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (872)
|.+.+.++++++.++|++.|+.||++|++++++ |+|...|++|+.+.+.+..+|+.|++.|||.|.++|+..... .
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~--pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~--g 77 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQ--PGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAP--G 77 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC--CcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCC--C
Confidence 456799999999999999999999999999999 999999999999988999999999999999999999875311 1
Q ss_pred hccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002876 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (872)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~ 160 (872)
.-..++++.|..+|+.++..+.+.+..+|.+...++..|..+++| .+|+++++.+...+++++.....+||.|+..+++
T Consensus 78 ~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k 156 (1010)
T KOG1991|consen 78 RPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFK 156 (1010)
T ss_pred CcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 223478999999999999999999999999999999999999999 7999999999999999999999999999999998
Q ss_pred hccc------cccc---hhhHHHHHHHHHhcccC-CCCCHHHHHHHHHHHHHhHhh-chhhccChhhHHHHHHHHHHhhc
Q 002876 161 EVSS------DAVE---QDHVNKILTAVVQGMNA-SESNNDVRLAATRALYNALGF-AQANFSNDMERDYIMRVVCEATL 229 (872)
Q Consensus 161 ~~~~------~~l~---~~~~~~i~~~l~~~l~~-~~~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~~il~~l~~~~~ 229 (872)
...- +.+. ...++.+++...+.+.. +..+.++.+..++++..++.+ +|..+...+.....++.....++
T Consensus 157 ~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~ 236 (1010)
T KOG1991|consen 157 TYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILN 236 (1010)
T ss_pred HHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHc
Confidence 7531 1110 12344444444444442 133556778888888887754 44444433333333333333221
Q ss_pred -----------------CCCHHHHHHHHHHHHHHHHHhHHh---------hH-----hhHHHHHHHHHHHHhc------C
Q 002876 230 -----------------SPEVKIRQAAFECLVAISSTYYEK---------LA-----PYIQDIFNITAKAVRE------D 272 (872)
Q Consensus 230 -----------------~~~~~~r~~~~~~l~~l~~~~~~~---------~~-----~~~~~l~~~~~~~~~~------~ 272 (872)
.+-++.++.|+-.|..+.+.|++. |. .+.+.+++.++..+.. .
T Consensus 237 rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yl 316 (1010)
T KOG1991|consen 237 RPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYL 316 (1010)
T ss_pred CCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 123456788999999999887521 11 2334455555554431 3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHH-HHHHHHHhcccCCcc---c----------
Q 002876 273 EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLV-PLLLETLLKQEEDQD---Q---------- 338 (872)
Q Consensus 273 ~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~l~~~l~~~~~d~~---~---------- 338 (872)
.+++...++.++...+... .-++++++++..++ .+++..|+..++|++ +
T Consensus 317 s~rvl~~~l~fl~~~Vs~~-----------------~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~ 379 (1010)
T KOG1991|consen 317 SDRVLYYLLNFLEQCVSHA-----------------STWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKF 379 (1010)
T ss_pred CHHHHHHHHHHHHHhccHH-----------------HHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcC
Confidence 3455555666555544321 12456677776654 455666665554432 1
Q ss_pred --CCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhc------C--cchhhhHHHHHHHHHhhCCCCCCcc-hHHH
Q 002876 339 --DEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT------K--QEWRQREAATYAFGSILEGPSPEKL-VPLV 407 (872)
Q Consensus 339 --~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~------~--~~~~~r~aal~~l~~l~~~~~~~~~-~~~~ 407 (872)
-++..+++.+|..++..++..-|+..+|.+++++.+-++ . .+.+.+++|+.++|++++...++.. ...+
T Consensus 380 Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m 459 (1010)
T KOG1991|consen 380 DIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM 459 (1010)
T ss_pred chhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH
Confidence 113457788999999999999999999999998886665 2 3588899999999999976643332 2333
Q ss_pred -HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhh-hccCCCCCCcccCccchHHHHHHHHHhcc-CC-hhHHHHHHHHHHH
Q 002876 408 -NIALNFMLTALMQDPNNHVKDTTAWTLGRMFE-FLHGSTLETPIINQGNCQQIISVLLQSMK-DV-PNVAEKACGALYF 483 (872)
Q Consensus 408 -~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d~-~~v~~~a~~al~~ 483 (872)
..+++++...+ +++-...|..|||+++.+++ .++ ....+..++....++|. |+ -.|+..|+.||..
T Consensus 460 E~flv~hVfP~f-~s~~g~Lrarac~vl~~~~~~df~---------d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~ 529 (1010)
T KOG1991|consen 460 EYFLVNHVFPEF-QSPYGYLRARACWVLSQFSSIDFK---------DPNNLSEALELTHNCLLNDNELPVRVEAALALQS 529 (1010)
T ss_pred HHHHHHHhhHhh-cCchhHHHHHHHHHHHHHHhccCC---------ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHH
Confidence 45678899999 99999999999999999995 333 24567788888888888 53 5889999999999
Q ss_pred HHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhh
Q 002876 484 LAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEA 563 (872)
Q Consensus 484 l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 563 (872)
|+.+.... ...+.++++++++.++...+..++ . ..-.++..++...++...|+..++...+.+.+..+..+
T Consensus 530 fI~~~~~~---~e~~~~hvp~~mq~lL~L~ne~En--d----~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~ 600 (1010)
T KOG1991|consen 530 FISNQEQA---DEKVSAHVPPIMQELLKLSNEVEN--D----DLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQT 600 (1010)
T ss_pred HHhcchhh---hhhHhhhhhHHHHHHHHHHHhcch--h----HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhc
Confidence 99987653 567999999999999999877652 2 23466788899999999999999999999888877764
Q ss_pred ---hcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 002876 564 ---QKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG 640 (872)
Q Consensus 564 ---~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 640 (872)
...+++|+. -...+++.++++++..+... .+++....+.+++.+..+|++.-.++-++++.....+.. ..
T Consensus 601 ~~~~~~~~ddk~---iaA~GiL~Ti~Til~s~e~~---p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~-~~ 673 (1010)
T KOG1991|consen 601 SEDEDESDDDKA---IAASGILRTISTILLSLENH---PEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTF-LS 673 (1010)
T ss_pred cCCCCccchHHH---HHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh-hh
Confidence 112222222 11223555666666666543 344555566677777777777656666666665555443 23
Q ss_pred hhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhcccc---ccHHHHHHHHHHHccCCCCCCCCchhHHHHH
Q 002876 641 QDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKIL---PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCF 717 (872)
Q Consensus 641 ~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l 717 (872)
+.+.|-+-.+++.+.+.+++. ..+--....-++..++..-...+. .|...+...+-..+.+.+...+=...++..+
T Consensus 674 ~~Isp~mW~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLl 752 (1010)
T KOG1991|consen 674 KEISPIMWGLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLL 752 (1010)
T ss_pred cccCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Confidence 446666777788777777643 222222333334333332222222 2455666677777776543344446689999
Q ss_pred HHHHHHhccchHHhHHHHHHHHHHHHhhc
Q 002876 718 GDIALAIGENFEKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 718 ~~i~~~~~~~~~~~l~~il~~l~~~l~~~ 746 (872)
..++..++....+|++.++......+...
T Consensus 753 e~iiL~~kg~~dq~iplf~~~a~~~l~~~ 781 (1010)
T KOG1991|consen 753 EVIILNCKGLLDQYIPLFLELALSRLTRE 781 (1010)
T ss_pred HHHHHHhcCcHhhHhHHHHHHHHHHHhcc
Confidence 99999998888888888888888777653
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-35 Score=318.20 Aligned_cols=654 Identities=18% Similarity=0.240 Sum_probs=486.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcC-CChhHHHHHHHHHHHhhhhccccccchhhHH
Q 002876 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQ-LPPHTKQATLETLGYICEEVSSDAVEQDHVN 173 (872)
Q Consensus 95 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~-~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~ 173 (872)
..|+..|.++++.+|+.|-.++..++... . +++.|...+.. +++.+|..|.-.+.+++... ...++...-.
T Consensus 7 ~qLl~~l~spDn~vr~~Ae~~l~~~~~~~----~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~ 78 (1075)
T KOG2171|consen 7 EQLLQQLLSPDNEVRRQAEEALETLAKTE----P---LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQ 78 (1075)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHhhccc----c---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHH
Confidence 34777788899999999999999888643 1 77778777764 57899999988888777664 3344445566
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHh
Q 002876 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK 253 (872)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 253 (872)
.|...++..+.. ++.+.||++..+++..+.... .. . .|+.+++.+++.++++++..|..++..|..+...++..
T Consensus 79 siks~lL~~~~~-E~~~~vr~k~~dviAeia~~~---l~-e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 79 SIKSSLLEIIQS-ETEPSVRHKLADVIAEIARND---LP-E-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHhc---cc-c-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc
Confidence 666666666654 788999999999999876422 22 1 68999999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhccc
Q 002876 254 LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQE 333 (872)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 333 (872)
+.+|++.+.+++.+.+.+++..+|..++..+..++.... .+ .-..+.+..++|-++..+...-
T Consensus 153 ~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~--~~---------------~~~~~~~~~llP~~l~vl~~~i 215 (1075)
T KOG2171|consen 153 LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLE--NN---------------KSEVDKFRDLLPSLLNVLQEVI 215 (1075)
T ss_pred cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhc--cc---------------hHHHHHHHHHhHHHHHHhHhhh
Confidence 999999999999999999887799999999988886431 00 1112233344454444443222
Q ss_pred CCcccCCccchHhHHHHHHHHHHHHHcCCcchhc---hHHHHHhhhcCc--chhhhHHHHHHHHHhhCCCC--CCcchHH
Q 002876 334 EDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPL---VMPFVEENITKQ--EWRQREAATYAFGSILEGPS--PEKLVPL 406 (872)
Q Consensus 334 ~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~---l~~~l~~~~~~~--~~~~r~aal~~l~~l~~~~~--~~~~~~~ 406 (872)
++.|+ .....+.+++..+....|+-+-|+ ++.+..+-..+. +-..|..|+-++.+++++.. -+...++
T Consensus 216 ~~~d~-----~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~ 290 (1075)
T KOG2171|consen 216 QDGDD-----DAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALL 290 (1075)
T ss_pred hccch-----HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhh
Confidence 21111 112334555566665555444343 444444444443 35679999999888888731 1333446
Q ss_pred HHHHHHHHHHHh---ccC------------CcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-C
Q 002876 407 VNIALNFMLTAL---MQD------------PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-V 470 (872)
Q Consensus 407 ~~~i~~~l~~~l---~~d------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~ 470 (872)
.+.+++.++..+ ..| ....-...|..++.+++.++++ ...++.+++.+-..+.. +
T Consensus 291 ~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g---------~~v~p~~~~~l~~~l~S~~ 361 (1075)
T KOG2171|consen 291 GHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG---------KQVLPPLFEALEAMLQSTE 361 (1075)
T ss_pred hccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh---------hhehHHHHHHHHHHhcCCC
Confidence 677777777766 011 1122456778889999998862 45677888888888886 6
Q ss_pred hhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHH
Q 002876 471 PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLV 550 (872)
Q Consensus 471 ~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~ 550 (872)
.+-|.++..+|+.+.+++ .+.+.+.+++|++.++..++++ +++||..|+.+++.+.......+..+..+.+
T Consensus 362 w~~R~AaL~Als~i~EGc------~~~m~~~l~~Il~~Vl~~l~Dp---hprVr~AA~naigQ~stdl~p~iqk~~~e~l 432 (1075)
T KOG2171|consen 362 WKERHAALLALSVIAEGC------SDVMIGNLPKILPIVLNGLNDP---HPRVRYAALNAIGQMSTDLQPEIQKKHHERL 432 (1075)
T ss_pred HHHHHHHHHHHHHHHccc------HHHHHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhc
Confidence 899999999999999988 5678889999999999999998 6999999999999999999887777666655
Q ss_pred H-HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHH-HHHHHHhccccchhhHH
Q 002876 551 P-LIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMG-LFLRVFAIRSATAHEEA 628 (872)
Q Consensus 551 ~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~-~l~~~l~~~~~~~~~~a 628 (872)
+ .++..+.. ...+ +++.++..++-.+.....++ .+.||++.+|+ .+..+++++.+.+++.+
T Consensus 433 ~~aL~~~ld~--------~~~~----rV~ahAa~al~nf~E~~~~~-----~l~pYLd~lm~~~l~~L~~~~~~~v~e~v 495 (1075)
T KOG2171|consen 433 PPALIALLDS--------TQNV----RVQAHAAAALVNFSEECDKS-----ILEPYLDGLMEKKLLLLLQSSKPYVQEQA 495 (1075)
T ss_pred cHHHHHHhcc--------cCch----HHHHHHHHHHHHHHHhCcHH-----HHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 5 44444422 1121 45666777777776665544 48999999999 66666677788899999
Q ss_pred HHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCC---hhhHHHHHHHHHHHHHHHHh-ccccccHHHHHHHHHHHc---c
Q 002876 629 MLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFE---DYQVCAITVGVVGDLCRALE-DKILPYCDGIMTQLLKDL---S 701 (872)
Q Consensus 629 ~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~---~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l---~ 701 (872)
+.+++.++...+..|.||++.++|.|.+.+++.+ ...+|..++.|++.+..+.| +.|.|+..++++.+...- .
T Consensus 496 vtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~ 575 (1075)
T KOG2171|consen 496 VTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQ 575 (1075)
T ss_pred HHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccch
Confidence 9999999999999999999999999999998755 24567788999999999998 889999999999998883 3
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCC---CCCCccHH------HH-------------
Q 002876 702 SNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHT---SGVDDDMT------EY------------- 759 (872)
Q Consensus 702 ~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~---~~~d~~~~------~~------------- 759 (872)
+. +...+...+.+++++++.+|++|.||++.+||.++...+...+. +++|++.. ++
T Consensus 576 ~~--dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~T 653 (1075)
T KOG2171|consen 576 DD--DDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRT 653 (1075)
T ss_pred hh--ccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeee
Confidence 33 56688899999999999999999999999999999988766542 11111110 10
Q ss_pred -HHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc
Q 002876 760 -TNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLG 827 (872)
Q Consensus 760 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g 827 (872)
...-|..++.++..+... .+..|.||+++.++.....++- ..++.||.+++.++..++....
T Consensus 654 svl~eK~~A~~~Lv~~a~~-----lk~~F~pYve~v~~l~v~~l~f-~fhdgVR~aa~~~~p~ll~~~~ 716 (1075)
T KOG2171|consen 654 SVLDEKETACEALGEYAKE-----LKEAFAPYVEQVVELMVPLLKF-YFHDGVRKAAAESMPQLLTCAL 716 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHh-----hhhhhhhHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHH
Confidence 122345566666666555 3456999999999965656553 5899999999999999887764
No 7
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-34 Score=290.83 Aligned_cols=684 Identities=16% Similarity=0.230 Sum_probs=480.1
Q ss_pred CChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHHhhcC---
Q 002876 51 KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPA--HDARSTASQVVAKVAGIELP--- 125 (872)
Q Consensus 51 ~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~--~~vr~~~a~~l~~i~~~~~~--- 125 (872)
.|..+|.-|-..|++.-. +....+...+.+.|.+++ ...|..++-.|..-...--|
T Consensus 13 pD~n~~~~Ae~~l~~~~~-------------------~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k 73 (859)
T KOG1241|consen 13 PDQNVRKRAEKQLEQAQS-------------------QNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERK 73 (859)
T ss_pred CCcchHHHHHHHHHHHHh-------------------ccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHH
Confidence 367777777666655332 333444556666777653 57777777766543321111
Q ss_pred ---CCCch--------hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHH
Q 002876 126 ---HKQWP--------ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRL 194 (872)
Q Consensus 126 ---~~~~~--------~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~ 194 (872)
..+|. .+-..++..|.++.+.....|..+++.|+..- +++..++.++..+.....+ .++..+|.
T Consensus 74 ~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~E----lP~n~wp~li~~lv~nv~~-~~~~~~k~ 148 (859)
T KOG1241|consen 74 QQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIE----LPQNQWPELIVTLVSNVGE-EQASMVKE 148 (859)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhh----CchhhCHHHHHHHHHhccc-ccchHHHH
Confidence 13563 23334556667777778888899999887642 3367789998888877764 34447999
Q ss_pred HHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHhHHhhHhhH--HHHHHHHHHHHh
Q 002876 195 AATRALYNALGFAQANFSNDMERDYIMRVVCEATL--SPEVKIRQAAFECLVAISSTYYEKLAPYI--QDIFNITAKAVR 270 (872)
Q Consensus 195 ~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~~~~~~--~~l~~~~~~~~~ 270 (872)
+++++++.+++.+.... .....+.++..++...+ .++..+|-+++.+|..-+......|..-. +-+++.+....+
T Consensus 149 ~slealGyice~i~pev-l~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq 227 (859)
T KOG1241|consen 149 SSLEALGYICEDIDPEV-LEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQ 227 (859)
T ss_pred HHHHHHHHHHccCCHHH-HHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeeccc
Confidence 99999999887543321 11223567776666553 56788999999999987765554444433 357888888889
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhh-HHHHHHHHHhcccCCc-ccCCccch-HhH
Q 002876 271 EDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPV-LVPLLLETLLKQEEDQ-DQDEGAWN-IAM 347 (872)
Q Consensus 271 ~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~l~~~l~~~~~d~-~~~~~~~~-~r~ 347 (872)
.++.+++..|+.++..+..-. +.++++|+.. +++..+..|..+++.- -..-+.|+ +..
T Consensus 228 ~~d~~i~~aa~~ClvkIm~Ly-------------------Y~~m~~yM~~alfaitl~amks~~deValQaiEFWstice 288 (859)
T KOG1241|consen 228 SPDEEIQVAAFQCLVKIMSLY-------------------YEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICE 288 (859)
T ss_pred CCcHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999988743 3566777665 7777777776322110 00012343 111
Q ss_pred HHHHHHHHHHHHc----C-----------CcchhchHHHHHhhh---cCcchhhhHHHHHHHHHhhCCCCCCcchHHHHH
Q 002876 348 AGGTCLGLVARTV----G-----------DDIVPLVMPFVEENI---TKQEWRQREAATYAFGSILEGPSPEKLVPLVNI 409 (872)
Q Consensus 348 ~a~~~l~~l~~~~----~-----------~~~~~~l~~~l~~~~---~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~ 409 (872)
.=.+......+.. + ..++|.++..+.+.- .+++|....||-.||.-+++.+. +.+ ++.
T Consensus 289 EEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~-D~I---v~~ 364 (859)
T KOG1241|consen 289 EEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG-DDI---VPH 364 (859)
T ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc-ccc---hhh
Confidence 1011111111111 1 123455555554422 22459999999999999988874 333 467
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhc
Q 002876 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGF 488 (872)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
++|++...+ +.++|+-|.++..++|.+.+.-. +.....+....+|.++..+.| +-.|+..+.|+++++++.+
T Consensus 365 Vl~Fiee~i-~~pdwr~reaavmAFGSIl~gp~------~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 365 VLPFIEENI-QNPDWRNREAAVMAFGSILEGPE------PDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred hHHHHHHhc-CCcchhhhhHHHHHHHhhhcCCc------hhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc
Confidence 899999999 99999999999999999988532 234567778899999999987 4678899999999999987
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCCh
Q 002876 489 EDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSS 568 (872)
Q Consensus 489 ~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 568 (872)
.. .-.-..++..+++.++..+.+ +|++...+++++..+++.+.+....
T Consensus 438 ~e----~~~n~~~l~~~l~~l~~gL~D----ePrva~N~CWAf~~Laea~~eA~~s------------------------ 485 (859)
T KOG1241|consen 438 PE----AIINQELLQSKLSALLEGLND----EPRVASNVCWAFISLAEAAYEAAVS------------------------ 485 (859)
T ss_pred hh----hcccHhhhhHHHHHHHHHhhh----CchHHHHHHHHHHHHHHHHHHhccC------------------------
Confidence 53 233334778888999998877 6788888999988777665421100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhc---cccchhhHHHHHHHHHHHHhhhhhHh
Q 002876 569 DEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI---RSATAHEEAMLAIGALAYATGQDFLK 645 (872)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~---~~~~~~~~a~~~l~~l~~~~~~~~~~ 645 (872)
. +..+ ...++++.|++.+++.-+- ....+|..++.+|+.+++.+.....|
T Consensus 486 ----------------------~-~qt~----~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~ 538 (859)
T KOG1241|consen 486 ----------------------N-GQTD----PATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP 538 (859)
T ss_pred ----------------------C-CCCC----ccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 0 0000 0235666666666655443 23458999999999999999888777
Q ss_pred hhHHHHHHHHhhhcC--------CCh----hhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhH
Q 002876 646 YMPEFYKYVEMGLQN--------FED----YQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPI 713 (872)
Q Consensus 646 ~~~~i~~~l~~~l~~--------~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~ 713 (872)
....+.+.+..-|.+ .++ .++...-+.+|+.+.++++.++.++.+++|..+++++++.. +..+.+.+
T Consensus 539 ~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~-s~~v~e~a 617 (859)
T KOG1241|consen 539 MVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKR-SAVVHEEA 617 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCc-cccchHHH
Confidence 776666655543321 111 24556778899999999999999999999999999999853 56788999
Q ss_pred HHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHH
Q 002876 714 FSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPH 793 (872)
Q Consensus 714 ~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 793 (872)
+.+++.++..+|+.|..|++.+.|.+...+++. .|| +++.+..+++++++.. ..+.|.||...
T Consensus 618 ~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~----------~e~------qVc~~aVglVgdl~ra-L~~~i~py~d~ 680 (859)
T KOG1241|consen 618 FLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNF----------QEY------QVCAAAVGLVGDLARA-LEDDILPYCDE 680 (859)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcc----------hHH------HHHHHHHHHHHHHHHH-HHhhhhhHHHH
Confidence 999999999999999999999999999999776 334 3666677888877776 67889999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcC----CChhHHHHHHHHHHHHHHH
Q 002876 794 ILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSS----DDHMIKESAEWAKLAISKA 869 (872)
Q Consensus 794 i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~ 869 (872)
++..|.+.+..+..+++++..++++||+|+-++|.+|.+|+.. |.+++..+.+- .|.+......-.|..+.++
T Consensus 681 ~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~---vm~llq~as~~~~d~~~~~~~dYvd~LRe~~lea 757 (859)
T KOG1241|consen 681 LMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEM---VMPLLQQASSVQTDPADDSMVDYVDELREGILEA 757 (859)
T ss_pred HHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHH
Confidence 9999999999988999999999999999999999999999995 88999888722 3344444444444444443
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-33 Score=280.16 Aligned_cols=651 Identities=17% Similarity=0.210 Sum_probs=479.9
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 002876 42 LAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAG 121 (872)
Q Consensus 42 L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~ 121 (872)
+++-+.+ .++-+|...++++...+.... ...|+ .+.+.|.+.|.+++......+-.+++.|+.
T Consensus 95 ~l~~lgd--~~~lIr~tvGivITTI~s~~~-------~~~wp--------elLp~L~~~L~s~d~n~~EgA~~AL~KIcE 157 (885)
T KOG2023|consen 95 CLHGLGD--ASPLIRATVGIVITTIASTGG-------LQHWP--------ELLPQLCELLDSPDYNTCEGAFGALQKICE 157 (885)
T ss_pred HHhhccC--chHHHHhhhhheeeeeecccc-------cccch--------hHHHHHHHHhcCCcccccchhHHHHHHHHh
Confidence 4444544 356888888888877765432 24563 346678888998887777777777777764
Q ss_pred h-------hcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHH
Q 002876 122 I-------ELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRL 194 (872)
Q Consensus 122 ~-------~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~ 194 (872)
- +++.....-++|.+++..+++++..|.-|+.|+..++-.- ++.+ -.+.+.++..++...+ |.+++||+
T Consensus 158 Dsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-~qal-~~~iD~Fle~lFalan--D~~~eVRk 233 (885)
T KOG2023|consen 158 DSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-TQAL-YVHIDKFLEILFALAN--DEDPEVRK 233 (885)
T ss_pred hhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-cHHH-HHHHHHHHHHHHHHcc--CCCHHHHH
Confidence 2 2222334578999999999999999999999998776543 3333 3567788888877665 99999999
Q ss_pred HHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH--hHHhhHhhHHHHHHHHHHHHhcC
Q 002876 195 AATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISST--YYEKLAPYIQDIFNITAKAVRED 272 (872)
Q Consensus 195 ~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~ 272 (872)
..+.++..+++.-++.+... .+.|++.....+++.++++...||+.+..+++. ..+.+.||+++++|.+++.+.-.
T Consensus 234 ~vC~alv~Llevr~dkl~ph--l~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ys 311 (885)
T KOG2023|consen 234 NVCRALVFLLEVRPDKLVPH--LDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYS 311 (885)
T ss_pred HHHHHHHHHHHhcHHhcccc--hHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccc
Confidence 99999999888766555432 257888888889999999999999999999985 45678899999999999887533
Q ss_pred ChhhHHHH-HHHHHHHHHHHHHHHH----------------hcC-CC------CCCCCCCc-h---------HhHHHhhh
Q 002876 273 EEPVALQA-IEFWSSVCDEEIDILE----------------EYG-GD------FSGDSDIP-C---------FYFIKHAL 318 (872)
Q Consensus 273 ~~~v~~~a-~~~~~~l~~~~~~~~~----------------~~~-~~------~~~~~~~~-~---------~~~~~~~l 318 (872)
+.++.... -+==..+-+.+.++-. +.. ++ ..++|.++ | .-+-+..+
T Consensus 312 d~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL 391 (885)
T KOG2023|consen 312 DDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELL 391 (885)
T ss_pred cccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHH
Confidence 32221110 0000000001101100 000 00 01123333 1 12335566
Q ss_pred hhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCC---cchhchHHHHHhhhcCcchhhhHHHHHHHHHhh
Q 002876 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSIL 395 (872)
Q Consensus 319 ~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~ 395 (872)
+.++|.+.+.+.. +.|.+|.++.-+++.+++..-+ ..+|.++|++.+.++|..+-+|..+++.++..+
T Consensus 392 ~~l~PlLk~~L~~---------~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys 462 (885)
T KOG2023|consen 392 PILLPLLKEHLSS---------EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYS 462 (885)
T ss_pred HHHHHHHHHHcCc---------chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhh
Confidence 6777777777663 3499999999999999996543 346678999999999998899999999998877
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHH
Q 002876 396 EGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVA 474 (872)
Q Consensus 396 ~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~ 474 (872)
.....+.-.+++..++..++..+ -|.+.+|+++||.++..+-+.-..+ .-+|+..++..+..+++- ..+--
T Consensus 463 ~wv~~~~~~~~f~pvL~~ll~~l-lD~NK~VQEAAcsAfAtleE~A~~e-------LVp~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 463 KWVVQDSRDEYFKPVLEGLLRRL-LDSNKKVQEAACSAFATLEEEAGEE-------LVPYLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred hhHhcCChHhhhHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHhccch-------hHHHHHHHHHHHHHHHHHHhhcce
Confidence 76544445577888888888888 9999999999999999988876432 234888888888888763 22212
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHH
Q 002876 475 EKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIM 554 (872)
Q Consensus 475 ~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~ 554 (872)
..-..|++++++.++.. -.-..|++.+++.|++....-+..++.+- ..++|+..++...+..+.||...++...+
T Consensus 535 lILYDAIgtlAdsvg~~----Ln~~~YiqiLmPPLi~KW~~lsd~DKdLf-PLLEClSsia~AL~~gF~P~~~~Vy~Rc~ 609 (885)
T KOG2023|consen 535 LILYDAIGTLADSVGHA----LNKPAYIQILMPPLIEKWELLSDSDKDLF-PLLECLSSIASALGVGFLPYAQPVYQRCF 609 (885)
T ss_pred ehHHHHHHHHHHHHHHh----cCcHHHHHHhccHHHHHHHhcCcccchHH-HHHHHHHHHHHHHhccccccCHHHHHHHH
Confidence 23456778887776422 11123788888888776544332245553 78999999999999999999999999998
Q ss_pred HHHHHHHhhhcCCh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhH--HHHHHHHHHHHhccccchhhH
Q 002876 555 MELHQTLEAQKLSS-----DEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYA--DQMMGLFLRVFAIRSATAHEE 627 (872)
Q Consensus 555 ~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~ 627 (872)
..+..+.+...... +-++. +....++..++.+++.+|.+ +.+.. ..++..++++++++-++||++
T Consensus 610 ~il~~t~q~~~~~~~~~~~~~pdk--dfiI~sLDL~SGLaegLg~~------ie~Lva~snl~~lll~C~~D~~peVRQS 681 (885)
T KOG2023|consen 610 RILQKTLQLLAKVQQDPTVEAPDK--DFIIVSLDLLSGLAEGLGSH------IEPLVAQSNLLDLLLQCLQDEVPEVRQS 681 (885)
T ss_pred HHHHHHHHHHHhccCCccccCCCc--ceEEEeHHHHhHHHHHhhhc------hHHHhhhccHHHHHHHHhccCChHHHHH
Confidence 88886644211111 11221 23345788999999999987 55543 348999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCC
Q 002876 628 AMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHR 707 (872)
Q Consensus 628 a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 707 (872)
++..+|.+++.+.+...|++..++|.+...++ .+...+...|+|++|.++-.++.+..+|+..++..|+..++.+....
T Consensus 682 ~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~-~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~ 760 (885)
T KOG2023|consen 682 AFALLGDLTKACFEHVIPNLADFLPILGANLN-PENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPK 760 (885)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhhcCC-hhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchH
Confidence 99999999999999999999999999997775 45668889999999999999999999999999999999999887777
Q ss_pred CCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhc
Q 002876 708 SVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 708 ~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~ 746 (872)
.+-++..-++|+++...++.+.|+++.++..=...+..-
T Consensus 761 tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i 799 (885)
T KOG2023|consen 761 TLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNI 799 (885)
T ss_pred HHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhccc
Confidence 888999999999999999999999999998888877665
No 9
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-30 Score=261.58 Aligned_cols=686 Identities=14% Similarity=0.179 Sum_probs=463.5
Q ss_pred ChhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhh
Q 002876 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (872)
Q Consensus 1 ~~~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (872)
|+ ++.+.|+++++||+.+|+.||+.|.+.+.+ ++|...+++++.+.+.|.++|..|++.+||+++++|.+..+
T Consensus 4 le-~l~~~l~qTl~pdps~rk~aEr~L~~~e~q--~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~---- 76 (960)
T KOG1992|consen 4 LE-TLANYLLQTLSPDPSVRKPAERALRSLEGQ--QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAED---- 76 (960)
T ss_pred HH-HHHHHHHhcCCCCCccCchHHHHHHHhccC--CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCC----
Confidence 44 788999999999999999999999999998 99999999999998889999999999999999999986432
Q ss_pred hccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002876 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (872)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~ 160 (872)
.-..+..+.++.||..++.++-+....++.+++.+++.++++++| ..||.+++.+...+++.|-.+-.+.+.+-+.+++
T Consensus 77 ~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFk 155 (960)
T KOG1992|consen 77 SPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFK 155 (960)
T ss_pred CccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 234688999999999999999999999999999999999999999 7999999999999999988888899999999999
Q ss_pred hccccccch-------hh-------HHHHHHHHHhcccCCCCCHH-------HHHHHHHHHHHhH-hhchhhccChhhHH
Q 002876 161 EVSSDAVEQ-------DH-------VNKILTAVVQGMNASESNND-------VRLAATRALYNAL-GFAQANFSNDMERD 218 (872)
Q Consensus 161 ~~~~~~l~~-------~~-------~~~i~~~l~~~l~~~~~~~~-------vr~~al~~l~~~~-~~~~~~~~~~~~~~ 218 (872)
.+.++.=+. .. +..++..........+.+.. +....++.+.++. +-++..|++. .+
T Consensus 156 r~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdn--m~ 233 (960)
T KOG1992|consen 156 RYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDN--MK 233 (960)
T ss_pred hcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhh--HH
Confidence 874332110 11 11122222222211122222 1122222333322 1133344322 13
Q ss_pred HHHHHHHHhhc-------CCC------HHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCC-----hhhHHHH
Q 002876 219 YIMRVVCEATL-------SPE------VKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDE-----EPVALQA 280 (872)
Q Consensus 219 ~il~~l~~~~~-------~~~------~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~v~~~a 280 (872)
.+|....++++ +++ .++|...|+.+.-.+..|++.+.+++++++..+|..+.+.. +..+..|
T Consensus 234 ~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~A 313 (960)
T KOG1992|consen 234 TWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKA 313 (960)
T ss_pred HHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 45555555443 111 35677899999999999999999999999999999886532 3467788
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHH-----HhcccCCcc--------------cCCc
Q 002876 281 IEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLET-----LLKQEEDQD--------------QDEG 341 (872)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-----l~~~~~d~~--------------~~~~ 341 (872)
++|+.++++... |. +++. .+.++..+++. +.-.++|+| +..|
T Consensus 314 l~FLt~V~~r~~-----y~------------~~F~--~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsD 374 (960)
T KOG1992|consen 314 LQFLTSVSRRPH-----YA------------ELFE--GENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSD 374 (960)
T ss_pred HHHHHHHHhhhh-----hH------------hhhc--chHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCC
Confidence 999999886321 11 0000 01122222221 111122211 1112
Q ss_pred cchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhc------CcchhhhHHHHHHHHHhhCCCC--------CCc---ch
Q 002876 342 AWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT------KQEWRQREAATYAFGSILEGPS--------PEK---LV 404 (872)
Q Consensus 342 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~------~~~~~~r~aal~~l~~l~~~~~--------~~~---~~ 404 (872)
.-+-|.+|.+.++.++..+...+.+.+...+...++ +.+|+.++.+++.+.+++.... ... ..
T Consensus 375 vdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~ 454 (960)
T KOG1992|consen 375 VDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVV 454 (960)
T ss_pred cchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHH
Confidence 335578899999999999966655555554444433 4679999999998888764321 011 22
Q ss_pred HHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHH
Q 002876 405 PLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALY 482 (872)
Q Consensus 405 ~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~ 482 (872)
.++ ..++|.+.+.- ..++|.++..+..-+.-+-.. ....++-.++|.++..++. ...|...|+.++-
T Consensus 455 ~Ff~~~ilp~L~s~~-vn~~pilka~aIKy~~~FR~q----------l~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiE 523 (960)
T KOG1992|consen 455 DFFANQILPDLLSPN-VNEFPILKADAIKYIYTFRNQ----------LGKEHLMALLPRLIRFLEAESRVVHSYAAIAIE 523 (960)
T ss_pred HHHHHHhhHHhccCc-cccccchhhcccceeeeeccc----------CChHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 222 34444444322 356788887776544333332 2456777899999999986 5677888888988
Q ss_pred HHHHhcccC---CCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHH
Q 002876 483 FLAQGFEDA---ISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQ 559 (872)
Q Consensus 483 ~l~~~~~~~---~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 559 (872)
.+....+.. +..+..+.||...++..+.+.+..++..+ -...+.++..++....+...|+.+.+++.+.+....
T Consensus 524 kil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~E---neylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~ 600 (960)
T KOG1992|consen 524 KLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAE---NEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEE 600 (960)
T ss_pred hccccccCccccccchhhcchHHHHHHHHHHHhccCCcccc---cHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHH
Confidence 887665441 24467788999999999998886654211 236788899999888888888888888887777665
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh
Q 002876 560 TLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYAT 639 (872)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 639 (872)
... .+.++.. -...++.++.+++..+.. ..+.+..+...+++.+..+|+..-.+.-..++..++-++...
T Consensus 601 v~K----NPs~P~f----nHYLFEsi~~li~~t~~~--~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~ 670 (960)
T KOG1992|consen 601 VSK----NPSNPQF----NHYLFESIGLLIRKTCKA--NPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHS 670 (960)
T ss_pred Hhc----CCCCchh----HHHHHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 543 2444432 224667777777766643 223366777888888888888776677788999999999888
Q ss_pred hhhhHhhhHHHHHHHHhhhcCCChhhHHH---HHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHccCCCCCCCCchhHH
Q 002876 640 GQDFLKYMPEFYKYVEMGLQNFEDYQVCA---ITVGVVGDLCRALEDKIL--PYCDGIMTQLLKDLSSNQLHRSVKPPIF 714 (872)
Q Consensus 640 ~~~~~~~~~~i~~~l~~~l~~~~~~~v~~---~a~~~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~~v~~~~~ 714 (872)
+..+.+.+..++|.++. +.-|+-+. +.+.++..+.......+. ..++.++..+-+++.+... -...+
T Consensus 671 ~~~ip~~~~~l~~~lLs----p~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~----Dh~GF 742 (960)
T KOG1992|consen 671 SGTIPDSYSPLFPPLLS----PNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAN----DHHGF 742 (960)
T ss_pred CCCCchhHHHHHHHhcC----HHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCccc----chhHH
Confidence 77555555555555542 22232221 344455555554443333 3466677777777765531 24577
Q ss_pred HHHHHHHHHhccc-hHHhHHHHHHHHHHHHhhcc
Q 002876 715 SCFGDIALAIGEN-FEKYLMYAMPMLQSAAELSV 747 (872)
Q Consensus 715 ~~l~~i~~~~~~~-~~~~l~~il~~l~~~l~~~~ 747 (872)
..+.+|...+... ..||+.++...+.+.++++.
T Consensus 743 ~LLn~i~~~~~~~~~~py~k~i~~llf~Rlqnsk 776 (960)
T KOG1992|consen 743 YLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSK 776 (960)
T ss_pred HHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccC
Confidence 8888888777643 57899999999999999874
No 10
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=2.6e-28 Score=253.75 Aligned_cols=676 Identities=16% Similarity=0.205 Sum_probs=454.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 2 SAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 2 ~~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
++.+..+|.+.+|+|+++|.+||..|+++... ++|...|++++.+...+...|+.|++.|++++..+|++....++..
T Consensus 3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~--~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQNVRSQAETQLKQLELT--EGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhccccc--hHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 46789999999999999999999999999888 8999999999999878999999999999999999999876543222
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002876 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (872)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~ 161 (872)
- .-+.+.|..||+.+++++.+++.++|+..+.+++.|+..++| +.||++++.+..++.+.+....++|++++..+..+
T Consensus 81 ~-~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~e 158 (1005)
T KOG2274|consen 81 L-IVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVLAELSDE 158 (1005)
T ss_pred C-cccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHH
Confidence 1 256789999999999999999999999999999999999999 79999999999999998899999999999999887
Q ss_pred cccccc---chhhHHHHHHHHHhcccCCCCCHHHHHHHH--HHHHHhHhhchhhccCh-hh--------HHHHHHHHHHh
Q 002876 162 VSSDAV---EQDHVNKILTAVVQGMNASESNNDVRLAAT--RALYNALGFAQANFSND-ME--------RDYIMRVVCEA 227 (872)
Q Consensus 162 ~~~~~l---~~~~~~~i~~~l~~~l~~~~~~~~vr~~al--~~l~~~~~~~~~~~~~~-~~--------~~~il~~l~~~ 227 (872)
...+.. .......+.- +..... ..+...|..++ +.+..+...+...-... .. .+.+++++...
T Consensus 159 v~~ee~~~~~~~~l~~m~~-~f~~~~--~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~ 235 (1005)
T KOG2274|consen 159 VDVEEMFFVGPVSLAEMYR-IFALTI--VYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHP 235 (1005)
T ss_pred HHHHHHhcccccchhhhhh-hhhhcc--ccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 632211 0111222211 111222 34444444444 55666554332111100 00 01233333333
Q ss_pred hc---CCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhc----------------------CCh------hh
Q 002876 228 TL---SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE----------------------DEE------PV 276 (872)
Q Consensus 228 ~~---~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~----------------------~~~------~v 276 (872)
++ .++...|...++++..+.+++|..+.+++...++.+|..+.. .++ ..
T Consensus 236 l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l 315 (1005)
T KOG2274|consen 236 LQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETL 315 (1005)
T ss_pred hcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHh
Confidence 32 345678999999999999999999999888888877765421 011 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHh-------cccCCc----ccCCccchH
Q 002876 277 ALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLL-------KQEEDQ----DQDEGAWNI 345 (872)
Q Consensus 277 ~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~-------~~~~d~----~~~~~~~~~ 345 (872)
....++|+..++.... ..+-++..++.+++.+...+. -+..|. +++++.+.+
T Consensus 316 ~i~i~eF~s~i~t~~~-----------------~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~ 378 (1005)
T KOG2274|consen 316 VIQIVEFLSTIVTNRF-----------------LSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTA 378 (1005)
T ss_pred hhhHHHHHHHHHHHHH-----------------HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchh
Confidence 3455666666664321 001122233333443332211 111111 112223677
Q ss_pred hHHHHHHHHHHHHHcCCcchhchHHHHHh---------hhcCc-chhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 002876 346 AMAGGTCLGLVARTVGDDIVPLVMPFVEE---------NITKQ-EWRQREAATYAFGSILEGPSPEKLVPLVNIALNFML 415 (872)
Q Consensus 346 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~---------~~~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~ 415 (872)
|..+...+..+...+|...+..+...... .++.+ .|+..++.+.+...+..+. .....+..+...+.
T Consensus 379 ~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~---~~dd~l~~l~~~~~ 455 (1005)
T KOG2274|consen 379 RISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDD---ANDDKLIELTIMID 455 (1005)
T ss_pred hhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCc---chHHHHHHHHHHHH
Confidence 88888888888888876655444444221 12233 4888888887777766432 23344455555566
Q ss_pred HHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhcc-C-ChhHHHHHHHHHHHHHHhcccCCC
Q 002876 416 TALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-D-VPNVAEKACGALYFLAQGFEDAIS 493 (872)
Q Consensus 416 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d-~~~v~~~a~~al~~l~~~~~~~~~ 493 (872)
..+.....|..-..+.++++.+++... +....+..++...+..+. + .+.++..|+.++..+|.
T Consensus 456 ~~l~~~e~P~Ll~Ra~~~i~~fs~~~~--------~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~------- 520 (1005)
T KOG2274|consen 456 NGLVYQESPFLLLRAFLTISKFSSSTV--------INPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK------- 520 (1005)
T ss_pred hhcccccCHHHHHHHHHHHHHHHhhhc--------cchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC-------
Confidence 666345677777799999998888753 456778888888888877 3 56788888888887762
Q ss_pred CCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHH
Q 002876 494 PSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREK 573 (872)
Q Consensus 494 ~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 573 (872)
...+.+..|.|+..++....+.+ ..+-...+++|..+++.-++.....-..+.|.++..+... .+||..
T Consensus 521 -~~vl~~~~p~ild~L~qlas~~s---~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~-------s~DP~V 589 (1005)
T KOG2274|consen 521 -VKVLLSLQPMILDGLLQLASKSS---DEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKY-------SEDPQV 589 (1005)
T ss_pred -ceeccccchHHHHHHHHHccccc---HHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHh-------cCCchH
Confidence 67889999999999999987664 4566688999999999988776666677888888877665 345532
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccc----cchhhHHHHHHHHHHHHhhhhhHh-hhH
Q 002876 574 QNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRS----ATAHEEAMLAIGALAYATGQDFLK-YMP 648 (872)
Q Consensus 574 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~----~~~~~~a~~~l~~l~~~~~~~~~~-~~~ 648 (872)
. ..+-.++..+.+.... ..++....+|.+++.++.+. .....-++..|..+++..++.+.. .+.
T Consensus 590 ~----~~~qd~f~el~q~~~~-------~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~ 658 (1005)
T KOG2274|consen 590 A----SLAQDLFEELLQIAAN-------YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC 658 (1005)
T ss_pred H----HHHHHHHHHHHHHHHh-------hcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence 2 2233344444332211 34677888999999998875 345556777888888877766543 445
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccc-----ccc--HHHHHHHHHHHccCCCCCCCCchhHHHHHHHHH
Q 002876 649 EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKI-----LPY--CDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 721 (872)
Q Consensus 649 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~-----~~~--~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~ 721 (872)
.++|.+.++.-.+++...-+.+-.|+..++....+++ .|- +-.+|..+-++|.-. .-..+.-.+|.+.
T Consensus 659 ~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~-----~sds~a~~VG~lV 733 (1005)
T KOG2274|consen 659 YAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPE-----TSDSAAAFVGPLV 733 (1005)
T ss_pred HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCc-----cchhHHHHHhHHH
Confidence 6888888887666666888888889888887643322 221 225666666555332 2233333455444
Q ss_pred ----HHhccchHHhHHHHHHHHHHHHhhc
Q 002876 722 ----LAIGENFEKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 722 ----~~~~~~~~~~l~~il~~l~~~l~~~ 746 (872)
...|..+.+.+++++..++..++..
T Consensus 734 ~tLit~a~~el~~n~d~IL~Avisrmq~a 762 (1005)
T KOG2274|consen 734 LTLITHASSELGPNLDQILRAVISRLQQA 762 (1005)
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHh
Confidence 4456667777888888888777654
No 11
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=9.4e-27 Score=229.38 Aligned_cols=664 Identities=13% Similarity=0.149 Sum_probs=437.1
Q ss_pred CChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHhhcC---
Q 002876 51 KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSP--AHDARSTASQVVAKVAGIELP--- 125 (872)
Q Consensus 51 ~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~--~~~vr~~~a~~l~~i~~~~~~--- 125 (872)
.|+++|.-|=.-|++. +.......-..+.+.|.+. ++.+|..++.++..-....-|
T Consensus 17 pD~n~rl~aE~ql~~l-------------------~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~ 77 (858)
T COG5215 17 PDPNARLRAEAQLLEL-------------------QSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQ 77 (858)
T ss_pred CCCCccccHHHHHHHh-------------------ccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHH
Confidence 3667776665555443 3333344555677777765 478888888777643321111
Q ss_pred ---CCCchh----HHH----HHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHH
Q 002876 126 ---HKQWPE----LIG----ALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRL 194 (872)
Q Consensus 126 ---~~~~~~----l~~----~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~ 194 (872)
...|.. .-+ ..++.+.++.+..-..|...++.|...- +....++.++..+...... ++...++.
T Consensus 78 ~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E----lp~~~wp~lm~~mv~nvg~-eqp~~~k~ 152 (858)
T COG5215 78 KGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME----LPNSLWPGLMEEMVRNVGD-EQPVSGKC 152 (858)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh----CccccchHHHHHHHHhccc-cCchHhHH
Confidence 135632 222 2445566777777777888888887642 2245577777777766664 55667888
Q ss_pred HHHHHHHHhHhhc-hhhccChhhHHHHHH-HHHHhh-cCCCHHHHHHHHHHHHHHHHHhHHhhH--hhHHHHHHHHHHHH
Q 002876 195 AATRALYNALGFA-QANFSNDMERDYIMR-VVCEAT-LSPEVKIRQAAFECLVAISSTYYEKLA--PYIQDIFNITAKAV 269 (872)
Q Consensus 195 ~al~~l~~~~~~~-~~~~~~~~~~~~il~-~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~~~l~~~~~~~~ 269 (872)
.++.+++..+... |..... ..+.++- ++.... +.++..+|.+++.+|..-+......|. ...+.+++.+....
T Consensus 153 ~sl~~~gy~ces~~Pe~li~--~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceat 230 (858)
T COG5215 153 ESLGICGYHCESEAPEDLIQ--MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEAT 230 (858)
T ss_pred HHHHHHHHHhhccCHHHHHH--HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhc
Confidence 9999998876532 211111 1133433 333333 356788999999999884332222222 12346788888888
Q ss_pred hcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHH-HHhcccCCcccCCccchHhHH
Q 002876 270 REDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLE-TLLKQEEDQDQDEGAWNIAMA 348 (872)
Q Consensus 270 ~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~l~~~~~d~~~~~~~~~~r~~ 348 (872)
+.+++++...++.++..+..-. +.+++.|+++.+-.+.. .|..+.| .+...
T Consensus 231 q~~d~e~q~aafgCl~kim~Ly-------------------Y~fm~~ymE~aL~alt~~~mks~nd---------~va~q 282 (858)
T COG5215 231 QGNDEELQHAAFGCLNKIMMLY-------------------YKFMQSYMENALAALTGRFMKSQND---------EVAIQ 282 (858)
T ss_pred cCCcHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhcCcch---------HHHHH
Confidence 8999999999999888877543 24566666654444332 3332221 11111
Q ss_pred HHHHHHHHHH----------HcC--------------CcchhchHHHHHhhhc---CcchhhhHHHHHHHHHhhCCCCCC
Q 002876 349 GGTCLGLVAR----------TVG--------------DDIVPLVMPFVEENIT---KQEWRQREAATYAFGSILEGPSPE 401 (872)
Q Consensus 349 a~~~l~~l~~----------~~~--------------~~~~~~l~~~l~~~~~---~~~~~~r~aal~~l~~l~~~~~~~ 401 (872)
+.+.-..++. .++ .+++|.++.++.+.-. +++|+...+|..|+.-.++.++.
T Consensus 283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd- 361 (858)
T COG5215 283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD- 361 (858)
T ss_pred HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-
Confidence 2222211111 011 2356777777765433 35699999999999998887752
Q ss_pred cchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCC-hhHHHHHHHH
Q 002876 402 KLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDV-PNVAEKACGA 480 (872)
Q Consensus 402 ~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~~v~~~a~~a 480 (872)
..+..++.++-+.+ ..++|.-|+++..++|.+...-. ....+.+.++.+|.+...+.|+ -.|+.+++|+
T Consensus 362 ---~i~~pVl~FvEqni-~~~~w~nreaavmAfGSvm~gp~------~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc 431 (858)
T COG5215 362 ---KIMRPVLGFVEQNI-RSESWANREAAVMAFGSVMHGPC------EDCLTKIVPQALPGIENEMSDSCLWVKSTTAWC 431 (858)
T ss_pred ---HhHHHHHHHHHHhc-cCchhhhHHHHHHHhhhhhcCcc------HHHHHhhHHhhhHHHHHhcccceeehhhHHHHH
Confidence 23455888899999 99999999999999998887421 2234677888888888888774 5789999999
Q ss_pred HHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccC---cHHHHHHHHHHHHHHH
Q 002876 481 LYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE---TAPMVMQLVPLIMMEL 557 (872)
Q Consensus 481 l~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~---~~~~~~~l~~~l~~~l 557 (872)
++.+.+.+...+.+.. |+...++..+..+.+ ++.+.....+....++...++. ...++.+.++.++..+
T Consensus 432 ~g~iad~va~~i~p~~----Hl~~~vsa~liGl~D----~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L 503 (858)
T COG5215 432 FGAIADHVAMIISPCG----HLVLEVSASLIGLMD----CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL 503 (858)
T ss_pred HHHHHHHHHHhcCccc----cccHHHHHHHhhhhc----cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence 9999988743322222 566667776666665 5666677888888888877643 3455566666666665
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 002876 558 HQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAY 637 (872)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~ 637 (872)
-..... -+++ ...|..++++|+.++...+.. +.+....+......-+ ++.+..++.+..
T Consensus 504 v~~t~~-----~~Ne--~n~R~s~fsaLgtli~~~~d~------V~~~~a~~~~~~~~kl--------~~~isv~~q~l~ 562 (858)
T COG5215 504 VKGTEL-----ALNE--SNLRVSLFSALGTLILICPDA------VSDILAGFYDYTSKKL--------DECISVLGQILA 562 (858)
T ss_pred HHHHHh-----hccc--hhHHHHHHHHHHHHHhhcchh------HHHHHHHHHHHHHHHH--------HHHHHHhhhhhh
Confidence 443220 1111 245667888888888766543 3332222222222111 122222222211
Q ss_pred HhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHH
Q 002876 638 ATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCF 717 (872)
Q Consensus 638 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l 717 (872)
.- ..+. -.++....+.++..+++..+.++.+..+++++.+++.+++.. ...+...++.++
T Consensus 563 ~e----------------D~~~---~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~-~t~~~~dV~~aI 622 (858)
T COG5215 563 TE----------------DQLL---VEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTK-PTTAFGDVYTAI 622 (858)
T ss_pred hH----------------HHHH---HHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccC-CchhhhHHHHHH
Confidence 10 0010 125677889999999999999999999999999999998873 445677899999
Q ss_pred HHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHH
Q 002876 718 GDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQF 797 (872)
Q Consensus 718 ~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 797 (872)
+.+..++++.|..|++.+.|.+.+.++.. | .+ ++....++++.+... ....|.+|...++..
T Consensus 623 sal~~sl~e~Fe~y~~~fiPyl~~aln~~------d----~~-------v~~~avglvgdlant-l~~df~~y~d~~ms~ 684 (858)
T COG5215 623 SALSTSLEERFEQYASKFIPYLTRALNCT------D----RF-------VLNSAVGLVGDLANT-LGTDFNIYADVLMSS 684 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhcch------h----HH-------HHHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 99999999999999999999999999554 1 12 344445555555544 567799999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhc
Q 002876 798 LDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLS 849 (872)
Q Consensus 798 l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~ 849 (872)
+.+.+..+..+++++..++++||+|+.++|.+|.+|+.. |..++..+.+
T Consensus 685 LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~---im~L~qqas~ 733 (858)
T COG5215 685 LVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDM---IMMLFQQASE 733 (858)
T ss_pred HHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHhc
Confidence 999999878899999999999999999999999999996 7778777663
No 12
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.98 E-value=7.2e-26 Score=235.83 Aligned_cols=761 Identities=14% Similarity=0.174 Sum_probs=519.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH-HHHhc-------ChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHh
Q 002876 7 QILLNAQSVDGTVRKQAEESLK-QYQEQ-------NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (872)
Q Consensus 7 ~~l~~~~s~~~~~r~~a~~~L~-~~~~~-------~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (872)
++++...|+|.+.|=.|..-|. ++++. -.+..+..+++.|.|. +.++..+|...+.-.+.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~--ngEVQnlAVKClg~lvs---------- 76 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK--NGEVQNLAVKCLGPLVS---------- 76 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHh----------
Confidence 8888999999999999998884 56544 2355777788888763 68889999877766553
Q ss_pred hhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCC-------CCchhHHHHHHHhhcCC--ChhHHH
Q 002876 79 VQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH-------KQWPELIGALLSNIHQL--PPHTKQ 149 (872)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~-------~~~~~l~~~l~~~l~~~--~~~~r~ 149 (872)
+.+.+..+.+.+.|...+-+.....|-..+..+.......-|. ..++.+.+.+.+.+..+ ...++-
T Consensus 77 -----Kvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~ 151 (1233)
T KOG1824|consen 77 -----KVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKC 151 (1233)
T ss_pred -----hchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHH
Confidence 2566777788888888888887888888777776665544331 23456666676666543 234777
Q ss_pred HHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhh-
Q 002876 150 ATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT- 228 (872)
Q Consensus 150 ~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~- 228 (872)
.++..+..+...+ ++.+ .+.-..++..+...+. .+-..||+.|+.+++.+..+.++.. ...+.+.+...+
T Consensus 152 e~lDil~d~lsr~-g~ll-~~fh~~il~~l~~ql~--s~R~aVrKkai~~l~~la~~~~~~l-----y~~li~~Ll~~L~ 222 (1233)
T KOG1824|consen 152 EVLDILADVLSRF-GTLL-PNFHLSILKCLLPQLQ--SPRLAVRKKAITALGHLASSCNRDL-----YVELIEHLLKGLS 222 (1233)
T ss_pred HHHHHHHHHHHhh-cccC-cchHHHHHHHHhhccc--ChHHHHHHHHHHHHHHHHHhcCHHH-----HHHHHHHHHhccC
Confidence 7888888887777 5666 4455667777777776 5778899999999999887655432 245555555544
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHH---hcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 002876 229 LSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAV---REDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGD 305 (872)
Q Consensus 229 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 305 (872)
+......-+...+|+..+++..+..+..|++.+++++.... +..+++.|..+++.+..+...
T Consensus 223 ~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r--------------- 287 (1233)
T KOG1824|consen 223 NRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR--------------- 287 (1233)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh---------------
Confidence 34566667788899999999999999999999999988877 567788999888888777652
Q ss_pred CCCchHhHHHhhhhhHHHHHHHHHhccc-------CC------------------cccCCccchHhHHHHHHHHHHHHH-
Q 002876 306 SDIPCFYFIKHALPVLVPLLLETLLKQE-------ED------------------QDQDEGAWNIAMAGGTCLGLVART- 359 (872)
Q Consensus 306 ~~~~~~~~~~~~l~~l~~~l~~~l~~~~-------~d------------------~~~~~~~~~~r~~a~~~l~~l~~~- 359 (872)
|+.-+.++.+.++..+++.+++.. || +|||+..|.+|.+|+.|+..+...
T Consensus 288 ----cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR 363 (1233)
T KOG1824|consen 288 ----CPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR 363 (1233)
T ss_pred ----ChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc
Confidence 445567788888899998887531 11 123345899999999999865431
Q ss_pred ----------cCCcc------------------------------------------------------hhchHHHHHhh
Q 002876 360 ----------VGDDI------------------------------------------------------VPLVMPFVEEN 375 (872)
Q Consensus 360 ----------~~~~~------------------------------------------------------~~~l~~~l~~~ 375 (872)
.|..+ +|.++..+...
T Consensus 364 ~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~q 443 (1233)
T KOG1824|consen 364 LEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQ 443 (1233)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHH
Confidence 11100 01111111122
Q ss_pred hcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCc--HHHHHHHHHHHHHhhhhccCCCCCCcccCc
Q 002876 376 ITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPN--NHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (872)
Q Consensus 376 ~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 453 (872)
+.+...+.|..+...+..++... +..+.++++.++|.+...+ +|.+ ...+..++..+.......+ |....
T Consensus 444 lr~ks~kt~~~cf~lL~eli~~l-p~~l~~~~~slvpgI~~~l-~DkSsss~~ki~~L~fl~~~L~s~~------p~~fh 515 (1233)
T KOG1824|consen 444 LREKSVKTRQGCFLLLTELINVL-PGALAQHIPSLVPGIIYSL-NDKSSSSNLKIDALVFLYSALISHP------PEVFH 515 (1233)
T ss_pred HhhccccchhhHHHHHHHHHHhC-cchhhhcccccchhhhhhc-CCccchHHHHHHHHHHHHHHHhcCC------hhhcc
Confidence 22222333455555555555554 4677888899999999999 8764 4455555555554444333 23445
Q ss_pred cchHHHHHHHHHhccCC-hhHHHHHHHHHHHHHHhcccCCC-CCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHH
Q 002876 454 GNCQQIISVLLQSMKDV-PNVAEKACGALYFLAQGFEDAIS-PSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETL 531 (872)
Q Consensus 454 ~~~~~il~~l~~~l~d~-~~v~~~a~~al~~l~~~~~~~~~-~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l 531 (872)
.+++.+.+.+..+..|+ +++...|......+++...+... ..-...||+.+++...++.+...+. +..||+.++.|+
T Consensus 516 p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~-DqeVkeraIscm 594 (1233)
T KOG1824|consen 516 PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDS-DQEVKERAISCM 594 (1233)
T ss_pred cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccc-cHHHHHHHHHHH
Confidence 78888888888888875 78888888888888887654311 1234668999999999999887766 789999999999
Q ss_pred HHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHH
Q 002876 532 NEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMG 611 (872)
Q Consensus 532 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~ 611 (872)
+.++..+|+.....++..++.+++.+.+.+ .|..+..++..++..--.-+ ..+....+++
T Consensus 595 gq~i~~fgD~l~~eL~~~L~il~eRl~nEi---------------TRl~AvkAlt~Ia~S~l~i~-----l~~~l~~il~ 654 (1233)
T KOG1824|consen 595 GQIIANFGDFLGNELPRTLPILLERLGNEI---------------TRLTAVKALTLIAMSPLDID-----LSPVLTEILP 654 (1233)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHhchh---------------HHHHHHHHHHHHHhccceee-----hhhhHHHHHH
Confidence 999999998777778888888888886532 23346667766654322111 4577888999
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhh-HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHH
Q 002876 612 LFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYM-PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCD 690 (872)
Q Consensus 612 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 690 (872)
.+...+.......|...+.++..++.+.+..+.+++ +.++..+...+. ..+..+.+.|+.++..+....+..+....+
T Consensus 655 ~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lis-esdlhvt~~a~~~L~tl~~~~ps~l~~~~~ 733 (1233)
T KOG1824|consen 655 ELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLIS-ESDLHVTQLAVAFLTTLAIIQPSSLLKISN 733 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHhcccHHHHHHhh
Confidence 999999888888899999999999999988777655 445555555554 346678889999999998888777777778
Q ss_pred HHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHH
Q 002876 691 GIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEA 770 (872)
Q Consensus 691 ~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~ 770 (872)
.+++.++.+++++-..-..-...+..+..+...-.+++. |.. +...++.... +. ....+.+++..+
T Consensus 734 ~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~-y~~-----l~s~lt~PV~----~~----~~~~l~kqa~~s 799 (1233)
T KOG1824|consen 734 PILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLD-YIS-----LLSLLTAPVY----EQ----VTDGLHKQAYYS 799 (1233)
T ss_pred hhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCcc-HHH-----HHHHHcCCcc----cc----cccchhHHHHHH
Confidence 899999999998854333333334444444443333333 322 2233333211 00 011234445555
Q ss_pred HHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcC
Q 002876 771 FSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSS 850 (872)
Q Consensus 771 ~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~ 850 (872)
++.++..+... .++ --..+...+.+-+..+..+.++|-.|+-.+|++....+....+- ++..+.++..+
T Consensus 800 iA~cvA~Lt~~-~~~----~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e------~~~~iieaf~s 868 (1233)
T KOG1824|consen 800 IAKCVAALTCA-CPQ----KSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNE------LKDTIIEAFNS 868 (1233)
T ss_pred HHHHHHHHHHh-ccc----cchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchh------hHHHHHHHcCC
Confidence 55555544333 222 22234444444444456788999999999999998775444332 66788889999
Q ss_pred CChhHHHHHHHHHHHHH
Q 002876 851 DDHMIKESAEWAKLAIS 867 (872)
Q Consensus 851 ~~~~~~~~~~~~~~~~~ 867 (872)
..+++|.+|++|.+.|.
T Consensus 869 p~edvksAAs~ALGsl~ 885 (1233)
T KOG1824|consen 869 PSEDVKSAASYALGSLA 885 (1233)
T ss_pred ChHHHHHHHHHHhhhhh
Confidence 99999999999999874
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.97 E-value=4.9e-25 Score=229.69 Aligned_cols=742 Identities=17% Similarity=0.206 Sum_probs=479.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhc----ChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHH------
Q 002876 8 ILLNAQSVDGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE------ 77 (872)
Q Consensus 8 ~l~~~~s~~~~~r~~a~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~------ 77 (872)
+|+.+-+.|.+|++.|-+.|.-+-+. +.......|+.-+.+ ...+.|-.+++.||..+..-.+...+.
T Consensus 52 lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s--~keq~rdissi~Lktvi~nl~P~~~~~la~tV~ 129 (1233)
T KOG1824|consen 52 LLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLS--GKEQLRDISSIGLKTVIANLPPSSSSFLAATVC 129 (1233)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhcc--chhhhccHHHHHHHHHHhcCCCccccccccHHH
Confidence 44444557899999999999855433 334444444443322 256788888888887654322100000
Q ss_pred ------------------------------hhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCC
Q 002876 78 ------------------------------LVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK 127 (872)
Q Consensus 78 ------------------------------~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~ 127 (872)
.-..+..+=++....+...++..+.++-..||+.++.+++.++... +..
T Consensus 130 ~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ 208 (1233)
T KOG1824|consen 130 KRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRD 208 (1233)
T ss_pred HHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHH
Confidence 0001111212233344445555566667889999999999999876 435
Q ss_pred CchhHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCC-CCCHHHHHHHHHHHHHhHh
Q 002876 128 QWPELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNAS-ESNNDVRLAATRALYNALG 205 (872)
Q Consensus 128 ~~~~l~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~-~~~~~vr~~al~~l~~~~~ 205 (872)
-+.+++..+...+..+ ++...+..+++++.++... +..+ ..+.+.++|.+.+..+.. ..+.++|...++++..++.
T Consensus 209 ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~a-g~r~-~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 209 LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQA-GHRF-GSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHh-cchh-hcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 7889999999888654 4556677889999999987 6666 688999999999888321 5678999999999999988
Q ss_pred hchhhccChhhHHHHHHHHHHhhc----------------------------------CCCHHHHHHHHHHHHHHHHHhH
Q 002876 206 FAQANFSNDMERDYIMRVVCEATL----------------------------------SPEVKIRQAAFECLVAISSTYY 251 (872)
Q Consensus 206 ~~~~~~~~~~~~~~il~~l~~~~~----------------------------------~~~~~~r~~~~~~l~~l~~~~~ 251 (872)
+.+..... .++.+++.+.+.+. |-+|.+|++|.+|+..++....
T Consensus 287 rcp~ei~p--~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~ 364 (1233)
T KOG1824|consen 287 RCPKEILP--HVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRL 364 (1233)
T ss_pred hChhhhcc--cchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccH
Confidence 77665432 23555555554331 1137899999999999999998
Q ss_pred HhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCCc-hHhHHHhhhhhHHHHHHHH
Q 002876 252 EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSG--DSDIP-CFYFIKHALPVLVPLLLET 328 (872)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~l~~l~~~l~~~ 328 (872)
+.+......+-+.++..+++.++.|+...++.+..+.........-+. +++. ....+ ...++....+.++..+-..
T Consensus 365 E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~-d~d~~e~~g~~s~~~~L~~~~~~iVkai~~q 443 (1233)
T KOG1824|consen 365 EMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLA-DNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQ 443 (1233)
T ss_pred HHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCccccc-CchhhhccCCccchHHHHhhhHHHHHHHHHH
Confidence 888888888999999999999999998888887777655432222221 1000 00011 1245555566666666665
Q ss_pred HhcccCCcccCCccchHhHHHHHHHHHHHHHcCC---cchhchHHHHHhhhcCcc--hhhhHHHHHHHHHhhCCCCCCcc
Q 002876 329 LLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQE--WRQREAATYAFGSILEGPSPEKL 403 (872)
Q Consensus 329 l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~~~~~~--~~~r~aal~~l~~l~~~~~~~~~ 403 (872)
+.. +....|..+...|..+....++ ...+.++|-+...++|.+ ...+..++..+..+..+.+++.+
T Consensus 444 lr~---------ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~f 514 (1233)
T KOG1824|consen 444 LRE---------KSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVF 514 (1233)
T ss_pred Hhh---------ccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhc
Confidence 541 1123466666777777777654 345667777777777643 56677777777766666667999
Q ss_pred hHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhcc--C-ChhHHHHHHHH
Q 002876 404 VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK--D-VPNVAEKACGA 480 (872)
Q Consensus 404 ~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--d-~~~v~~~a~~a 480 (872)
.++++.+.+.+.... .|+-+++-..|+.+.+++++.+..-..+......+++..++...++.+. | +.+||++|..+
T Consensus 515 hp~~~~Ls~~v~~aV-~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIsc 593 (1233)
T KOG1824|consen 515 HPHLSALSPPVVAAV-GDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISC 593 (1233)
T ss_pred ccchhhhhhHHHHHh-cCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 999999999999999 9999999999999999999987532222234457888999999888887 3 57999999999
Q ss_pred HHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHcccc-CcHHHHHHHHHHHHHHHHH
Q 002876 481 LYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD-ETAPMVMQLVPLIMMELHQ 559 (872)
Q Consensus 481 l~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~ 559 (872)
++.++.++ ++.+...++..++.+++.+++. -.|..++.|+..++...-. ...+.+..+++.+.+.+..
T Consensus 594 mgq~i~~f------gD~l~~eL~~~L~il~eRl~nE-----iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK 662 (1233)
T KOG1824|consen 594 MGQIIANF------GDFLGNELPRTLPILLERLGNE-----ITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRK 662 (1233)
T ss_pred HHHHHHHH------hhhhhhhhHHHHHHHHHHHhch-----hHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHH
Confidence 99999998 4678888999999999999753 3577888888776654432 3466777788887777654
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHh-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 002876 560 TLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQY-ADQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (872)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 638 (872)
.. ..++...+.++..++...+.. +..+ ++.++..+..++...+-.+-+.++.++..++..
T Consensus 663 ~~-------------r~lr~~~l~a~~~L~~~~~~~------~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~ 723 (1233)
T KOG1824|consen 663 NQ-------------RALRLATLTALDKLVKNYSDS------IPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAII 723 (1233)
T ss_pred HH-------------HHHHHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 32 135556777777887777654 3333 345555555555555555556666666655544
Q ss_pred hhhhhHhhhHHHHHHHHhhhcCC----------------------Ch----------------h---hHHH----HHHHH
Q 002876 639 TGQDFLKYMPEFYKYVEMGLQNF----------------------ED----------------Y---QVCA----ITVGV 673 (872)
Q Consensus 639 ~~~~~~~~~~~i~~~l~~~l~~~----------------------~~----------------~---~v~~----~a~~~ 673 (872)
...........+++.++..++++ ++ . .+.+ ....|
T Consensus 724 ~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~c 803 (1233)
T KOG1824|consen 724 QPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKC 803 (1233)
T ss_pred ccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHH
Confidence 43333333333333333222210 00 0 0000 01112
Q ss_pred HHHHHHHHhcc------------------------------------ccccHHHHHHHHHHHccCCCCCCCCchhHHHHH
Q 002876 674 VGDLCRALEDK------------------------------------ILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCF 717 (872)
Q Consensus 674 l~~l~~~~~~~------------------------------------~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l 717 (872)
...++..+++. ...+.+.+-..++..++++ +.+++.+|..|+
T Consensus 804 vA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp--~edvksAAs~AL 881 (1233)
T KOG1824|consen 804 VAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSP--SEDVKSAASYAL 881 (1233)
T ss_pred HHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCC--hHHHHHHHHHHh
Confidence 22222222211 0112334445566667777 677888888888
Q ss_pred HHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHH
Q 002876 718 GDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQF 797 (872)
Q Consensus 718 ~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 797 (872)
|.++. | +...|++.++..+. .... ..| -.+..+..++..- ..+.++||++.|+..
T Consensus 882 Gsl~v--g-nl~~yLpfil~qi~----sqpk--------~Qy------LLLhSlkevi~~~----svd~~~~~v~~IW~l 936 (1233)
T KOG1824|consen 882 GSLAV--G-NLPKYLPFILEQIE----SQPK--------RQY------LLLHSLKEVIVSA----SVDGLKPYVEKIWAL 936 (1233)
T ss_pred hhhhc--C-chHhHHHHHHHHHh----cchH--------hHH------HHHHHHHHHHHHh----ccchhhhhHHHHHHH
Confidence 88764 2 23345444444333 2210 122 1334444444331 334688999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 002876 798 LDSLYMEKDMDDVVTKTAIGVLGDLADTL 826 (872)
Q Consensus 798 l~~~l~~~~~~~~v~~~a~~~l~~i~~~~ 826 (872)
+.+.++. ..+..|.....|+|.++-.=
T Consensus 937 L~k~cE~--~eegtR~vvAECLGkL~l~e 963 (1233)
T KOG1824|consen 937 LFKHCEC--AEEGTRNVVAECLGKLVLIE 963 (1233)
T ss_pred HHHhccc--chhhhHHHHHHHhhhHHhCC
Confidence 9999885 46677999999999987643
No 14
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.9e-27 Score=238.18 Aligned_cols=687 Identities=15% Similarity=0.200 Sum_probs=422.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccC
Q 002876 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (872)
Q Consensus 5 l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (872)
+.+.|+++.|+|..+++.||.+|.+.+++ |||...|..++.+.+.+.++|.+|++.+||.++++|+.. ..| .
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtq--PGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~-----~~~-s 73 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQ--PGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRN-----TKM-S 73 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccC--CcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcC-----Ccc-c
Confidence 57899999999999999999999999999 999999999999988899999999999999999999842 233 6
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCC----ChhHHHHHHHHHHHhhh
Q 002876 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL----PPHTKQATLETLGYICE 160 (872)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~----~~~~r~~al~~l~~i~~ 160 (872)
+|+|.|+.||..++..+.++++.+..+.|.++++||+.++| ..||++++.|.+.+++. |....+..+.++..+.+
T Consensus 74 l~~EEK~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyP-reWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK 152 (978)
T KOG1993|consen 74 LPPEEKDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYP-REWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILK 152 (978)
T ss_pred CCHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 79999999999999876 77777888999998888
Q ss_pred hccccccc------hhhHHHHHHHHHhcccCC----------CC-------CHHHHHHHHHHHHHhHhhchhhccChh--
Q 002876 161 EVSSDAVE------QDHVNKILTAVVQGMNAS----------ES-------NNDVRLAATRALYNALGFAQANFSNDM-- 215 (872)
Q Consensus 161 ~~~~~~l~------~~~~~~i~~~l~~~l~~~----------~~-------~~~vr~~al~~l~~~~~~~~~~~~~~~-- 215 (872)
......+. .+..+.|++.+...+-++ .. ..+.-..+++++..++-+ ++....
T Consensus 153 ~Lat~RL~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~---G~~~P~ks 229 (978)
T KOG1993|consen 153 ALATKRLLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVF---GFQNPSKS 229 (978)
T ss_pred HHHHhHHhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHh---ccCCcchh
Confidence 76433221 223344444222221110 00 112234455555555432 121111
Q ss_pred ---hH-HHHHHH----HHHhhcCCCHHHH----HH----HHHHHHHHHHHhHHhhHh--hHHHHHHHHHHHHhcCC----
Q 002876 216 ---ER-DYIMRV----VCEATLSPEVKIR----QA----AFECLVAISSTYYEKLAP--YIQDIFNITAKAVREDE---- 273 (872)
Q Consensus 216 ---~~-~~il~~----l~~~~~~~~~~~r----~~----~~~~l~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~~---- 273 (872)
++ ..+++. +...+......++ .. ..+.+..+....|-.|.. ..+..+++.+..+.++.
T Consensus 230 e~~eRl~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~ 309 (978)
T KOG1993|consen 230 EFFERLLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLG 309 (978)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhc
Confidence 11 122221 1111111111122 22 233334444444433333 34455555555554431
Q ss_pred ---------hhhHHHHHHHHHHHHHHHHHHHHhcC------CCCCCCCCCc-hH-----hHHHhhhhhHHHHHHHH----
Q 002876 274 ---------EPVALQAIEFWSSVCDEEIDILEEYG------GDFSGDSDIP-CF-----YFIKHALPVLVPLLLET---- 328 (872)
Q Consensus 274 ---------~~v~~~a~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~-~~-----~~~~~~l~~l~~~l~~~---- 328 (872)
++...+++..+..+.... ..++. .+.. +.... .. .+..+-+..+...++.+
T Consensus 310 ~~~~~~~~fe~f~iq~l~mlK~vm~~~---~~~~s~~~k~~~d~~-~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflL 385 (978)
T KOG1993|consen 310 QISGHLSSFEEFFIQCLNMLKKVMIMK---NYKFSLTIKEFCDTK-DEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLL 385 (978)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhh---cccccccchhcccCc-cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence 233344444444333211 01111 0100 00000 00 11122233344444433
Q ss_pred ----HhcccCCcc-----cCCccc--hHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCc---------chhhhHHHH
Q 002876 329 ----LLKQEEDQD-----QDEGAW--NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQ---------EWRQREAAT 388 (872)
Q Consensus 329 ----l~~~~~d~~-----~~~~~~--~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~---------~~~~r~aal 388 (872)
+..+.+|++ +...+| ++|.+|......+...+++-++|.++.++....+-. ..-.+.|.+
T Consensus 386 t~~eLEeW~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiY 465 (978)
T KOG1993|consen 386 TEEELEEWTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIY 465 (978)
T ss_pred CHHHHHHHhcChHHhhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHH
Confidence 122233332 111234 789999999999999999999999998885432211 133455666
Q ss_pred HHHHHhhCCCC-CCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHh
Q 002876 389 YAFGSILEGPS-PEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQS 466 (872)
Q Consensus 389 ~~l~~l~~~~~-~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 466 (872)
.++|..+.... .-.+...+ ..++|.+.. - .+....+|+..+|.+|.....- ...+..+.+...+++.
T Consensus 466 aa~g~~a~~l~~~~dF~~Wl~~~llpEl~~-~-~~~~RiiRRRVa~ilg~Wvsvq---------~~~e~k~l~Y~a~lnL 534 (978)
T KOG1993|consen 466 AAFGLAAYELSNILDFDKWLQEALLPELAN-D-HGNSRIIRRRVAWILGQWVSVQ---------QKLELKPLLYCAFLNL 534 (978)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHhhCHHhhh-c-ccchhHHHHHHHHHHhhhhhee---------chHhHHHHHHHHHHHh
Confidence 66655433221 12233333 223333331 1 3345668899999999888742 3455666777888899
Q ss_pred ccCC--hhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHH
Q 002876 467 MKDV--PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAP 544 (872)
Q Consensus 467 l~d~--~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~ 544 (872)
++|+ ..|+-+++.++...++.+. ..++...||++.+...+.+.+.... +-..|..++..++.++...++.+.|
T Consensus 535 L~d~~D~vV~Ltt~~tlkl~vDD~n---F~~dsFlp~lenlf~~lfkll~~~~--e~Dtk~~VL~~ls~lI~r~~e~I~P 609 (978)
T KOG1993|consen 535 LQDQNDLVVRLTTARTLKLVVDDWN---FSEDSFLPYLENLFVLLFKLLKAVE--ECDTKTSVLNLLSTLIERVSEHIAP 609 (978)
T ss_pred cCccccceeehHHHHHHHHhhhhcc---CChhhhhhhHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 9873 5788899999999988765 3488899999999999888887654 4456778999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccch
Q 002876 545 MVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATA 624 (872)
Q Consensus 545 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 624 (872)
+...++..+-..|... .+++ -++.+++.++..+++.+|... ..+.+++-++++.....-+.+...+
T Consensus 610 ~~~~ivq~lp~LWe~s-------~~e~----lLr~alL~~L~~lV~alg~qS---~~~~~fL~pVIel~~D~~sP~hv~L 675 (978)
T KOG1993|consen 610 YASTIVQYLPLLWEES-------EEEP----LLRCALLATLRNLVNALGAQS---FEFYPFLYPVIELSTDPSSPEHVYL 675 (978)
T ss_pred HHHHHHHHHHHHHhhh-------ccCc----HHHHHHHHHHHHHHHHhccCC---ccchHHHHHHHHHhcCCCCCceeeh
Confidence 8888888877777653 1111 367778999999999999762 1133444333332222112223346
Q ss_pred hhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHh-ccccccHHHHHHHHHHHccCC
Q 002876 625 HEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALE-DKILPYCDGIMTQLLKDLSSN 703 (872)
Q Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~ 703 (872)
-+.++..++...... +.+.|-+-.++|.+...++.+. +....++..+..++--.+ .-+..|..++...+...+.+-
T Consensus 676 ~EDgmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~st--e~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dv 752 (978)
T KOG1993|consen 676 LEDGMELWLTTLMNS-QKLTPELLLLFPHLLYIIEQST--ENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDV 752 (978)
T ss_pred hhhHHHHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 788999988887655 4556666667777777765432 334445555554443222 223456777777777777654
Q ss_pred CCCCCCchhHHHHHHHHHHHhccchH-HhHHHHHHHHHHHH
Q 002876 704 QLHRSVKPPIFSCFGDIALAIGENFE-KYLMYAMPMLQSAA 743 (872)
Q Consensus 704 ~~~~~v~~~~~~~l~~i~~~~~~~~~-~~l~~il~~l~~~l 743 (872)
. .+-...++..+..+.+.-+ -+. .+...++|.+...+
T Consensus 753 r--~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I 790 (978)
T KOG1993|consen 753 R--NEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSI 790 (978)
T ss_pred h--HHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHH
Confidence 2 2222334444444433322 121 24455667766655
No 15
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.3e-24 Score=218.15 Aligned_cols=701 Identities=13% Similarity=0.118 Sum_probs=439.3
Q ss_pred ChhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhh
Q 002876 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (872)
Q Consensus 1 ~~~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (872)
|++++.+.+.+++++|+.+|..||..|++++++ |||...+++++.+.+.+..+|+.|++.+||.+.+.|+......
T Consensus 1 ~~~ellqcf~qTldada~~rt~AE~~Lk~leKq--PgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~-- 76 (970)
T COG5656 1 MREELLQCFLQTLDADAGKRTIAEAMLKDLEKQ--PGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDG-- 76 (970)
T ss_pred ChHHHHHHHHHHhccCcchhhHHHHHHHHhhcC--CcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCC--
Confidence 789999999999999999999999999999999 9999999999998788999999999999999999997522110
Q ss_pred hccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002876 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (872)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~ 160 (872)
.=.--.++.|..+.+.++..+..++...|.....++..|...++|...|+ ++|...+.+++++..+...+|.|+..+++
T Consensus 77 i~~Dek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfk 155 (970)
T COG5656 77 IKADEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFK 155 (970)
T ss_pred CCCcccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHH
Confidence 00013467778888888888888888889888889999999999988999 99999999999999999999999999998
Q ss_pred hcccccc-c----hhhHHHHHHHHHhc---ccC--CCCCHHHHHHHHHHHHHhHhh-chhhccChhhHHHHHHHHHHhhc
Q 002876 161 EVSSDAV-E----QDHVNKILTAVVQG---MNA--SESNNDVRLAATRALYNALGF-AQANFSNDMERDYIMRVVCEATL 229 (872)
Q Consensus 161 ~~~~~~l-~----~~~~~~i~~~l~~~---l~~--~~~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~~il~~l~~~~~ 229 (872)
...-+.- + .......+|.+.+. +.+ ++++.++-...++.+...+.+ +|..+...+.....++.....++
T Consensus 156 ayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~q 235 (970)
T COG5656 156 AYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQ 235 (970)
T ss_pred HHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHc
Confidence 6421110 0 12334445554432 221 234566777778877765532 34444333222222222222211
Q ss_pred --------CCCHH---------HHHHHHHHHHHHHHHhHHhhH------------hhHHHHHHHHHHHHhc--C-ChhhH
Q 002876 230 --------SPEVK---------IRQAAFECLVAISSTYYEKLA------------PYIQDIFNITAKAVRE--D-EEPVA 277 (872)
Q Consensus 230 --------~~~~~---------~r~~~~~~l~~l~~~~~~~~~------------~~~~~l~~~~~~~~~~--~-~~~v~ 277 (872)
+-+|+ .++.|+--|..+++.+.+... ..++.++..++..++. . .--..
T Consensus 236 kplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWls 315 (970)
T COG5656 236 KPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLS 315 (970)
T ss_pred CCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecc
Confidence 11333 356788888888877643211 1223333333333321 1 10011
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHH-HHHHHHhcccCCcc---cCC------------c
Q 002876 278 LQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVP-LLLETLLKQEEDQD---QDE------------G 341 (872)
Q Consensus 278 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~l~~~l~~~~~d~~---~~~------------~ 341 (872)
...+-++....+...... +.+.++++++.-++. .++..++-.+++.| +|. +
T Consensus 316 d~~LYfi~~Fve~cv~~d-------------~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~ 382 (970)
T COG5656 316 DIELYFIDFFVELCVDAD-------------QTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDN 382 (970)
T ss_pred hHHHHHHHHHHHHHhhhH-------------hhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcC
Confidence 222333333333221111 123455666655543 33344443332211 111 1
Q ss_pred cchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhc-----C---cchhhhHHHHHHHHHhhCCCCC-CcchHHH-HHHH
Q 002876 342 AWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT-----K---QEWRQREAATYAFGSILEGPSP-EKLVPLV-NIAL 411 (872)
Q Consensus 342 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~-----~---~~~~~r~aal~~l~~l~~~~~~-~~~~~~~-~~i~ 411 (872)
..+.-.+|..++..+...-++..+..+++++..-++ + .+.+..++|+..++++..-.+. ......+ .-++
T Consensus 383 g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv 462 (970)
T COG5656 383 GLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIV 462 (970)
T ss_pred CCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 224445666777666666677777777777665542 1 3467789999999998873321 1222223 4467
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCC-hhHHHHHHHHHHHHHHhccc
Q 002876 412 NFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDV-PNVAEKACGALYFLAQGFED 490 (872)
Q Consensus 412 ~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~~v~~~a~~al~~l~~~~~~ 490 (872)
+++...+ +++....|..||..++.+.+.++. ...+..+.+...+++++| -.|+..|+.|+..|..+...
T Consensus 463 ~hv~P~f-~s~ygfL~Srace~is~~eeDfkd---------~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~ 532 (970)
T COG5656 463 NHVIPAF-RSNYGFLKSRACEFISTIEEDFKD---------NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQS 532 (970)
T ss_pred HHhhHhh-cCcccchHHHHHHHHHHHHHhccc---------chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhh
Confidence 8888899 999999999999999999776642 345557777778888874 57888999999999876432
Q ss_pred CCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCCh--
Q 002876 491 AISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSS-- 568 (872)
Q Consensus 491 ~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-- 568 (872)
...+..|.+.+++.++...+..+. . ..-.++..++...+++..|+..+++..+.+.+-.....-...+
T Consensus 533 ----h~k~sahVp~tmekLLsLSn~fei---D---~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d 602 (970)
T COG5656 533 ----HEKFSAHVPETMEKLLSLSNTFEI---D---PLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSD 602 (970)
T ss_pred ----hHHHHhhhhHHHHHHHHhcccccc---h---HHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 466778999999999988776542 2 2335566778888888888888888888775444332111111
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhh
Q 002876 569 -----DEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDF 643 (872)
Q Consensus 569 -----~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~ 643 (872)
+|++ ....+++.++..++-++... ..+++.....+.|.+-=++.+.-.+.-.+++..+....... ..+
T Consensus 603 ~~s~vDDKq---maasGiL~T~~smiLSlen~---p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s-keI 675 (970)
T COG5656 603 TSSVVDDKQ---MAASGILRTIESMILSLENR---PLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS-KEI 675 (970)
T ss_pred ccccccHHH---HHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH-HHh
Confidence 1221 12233445555555555443 22233334455555555566555566677777776665433 344
Q ss_pred HhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccc---cHHHHHHHHHHHccCCCCCCCCchhHHHHHHHH
Q 002876 644 LKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILP---YCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI 720 (872)
Q Consensus 644 ~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~---~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i 720 (872)
.|-+..++..+.+.+.+.....-...+..++..++...+.++.. |..-+.......+.+....-+=+..++..+..+
T Consensus 676 ~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l 755 (970)
T COG5656 676 EPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESL 755 (970)
T ss_pred hhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHH
Confidence 46777788888877765432223344555777777766655532 444455555556665521113345677788888
Q ss_pred HHHhcc-chHHhHHHHHHHHHHHHhhc
Q 002876 721 ALAIGE-NFEKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 721 ~~~~~~-~~~~~l~~il~~l~~~l~~~ 746 (872)
+..++. -..+|+|-+.......+...
T Consensus 756 ~Ln~rd~Ll~qy~plfi~vags~l~~~ 782 (970)
T COG5656 756 ILNIRDELLSQYLPLFISVAGSGLKMI 782 (970)
T ss_pred HHHccchhHHhhhHHHHHHHhhhhhcc
Confidence 888876 45567776555555444433
No 16
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.1e-21 Score=194.82 Aligned_cols=744 Identities=13% Similarity=0.142 Sum_probs=421.4
Q ss_pred ChhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHh
Q 002876 1 MSAEVTQILLNAQSV--DGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (872)
Q Consensus 1 ~~~~l~~~l~~~~s~--~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (872)
|-.++.|++..+.+| |+..|+||..++++++.+ |..|..+.+++.....++.+|..+.++|-..++.
T Consensus 1 ~mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsS--p~aw~Icie~l~~~ts~d~vkf~clqtL~e~vre--------- 69 (980)
T KOG2021|consen 1 MMDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSS--PNAWEICIELLINETSNDLVKFYCLQTLIELVRE--------- 69 (980)
T ss_pred CchHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCC--ccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHH---------
Confidence 344799999999886 889999999999999999 9999999999988768999999999999888763
Q ss_pred hhhccCCChHHHHHHHHHHHHhcC-----CC----ChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCCh-hHH
Q 002876 79 VQRWLSLDSSVKAQIKSFILKTLS-----SP----AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPP-HTK 148 (872)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~-----~~----~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~-~~r 148 (872)
.+...+....+.+|..+...+. ++ .+.+++.++++++.++..++| ..|+.++..++..+.-+.. .--
T Consensus 70 --kyne~nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-~~WnsfF~dlmsv~~~~s~~~~~ 146 (980)
T KOG2021|consen 70 --KYNEANLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-DCWNSFFDDLMSVFQVDSAISGL 146 (980)
T ss_pred --hhccCCHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhcccchhhH
Confidence 2344778888889988887643 33 468999999999999999999 7899999999988865432 112
Q ss_pred HHHHHHHHHhhhhc-c------cc----------ccchhhHHHHHHHHHhcccCC--CCCHHHHHHHHHHHHHhHhhchh
Q 002876 149 QATLETLGYICEEV-S------SD----------AVEQDHVNKILTAVVQGMNAS--ESNNDVRLAATRALYNALGFAQA 209 (872)
Q Consensus 149 ~~al~~l~~i~~~~-~------~~----------~l~~~~~~~i~~~l~~~l~~~--~~~~~vr~~al~~l~~~~~~~~~ 209 (872)
..-++++-.|=++. + ++ .+.....+.++..+.+.+... ..++.+-...++|+++++.|+.-
T Consensus 147 dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdI 226 (980)
T KOG2021|consen 147 DFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDI 226 (980)
T ss_pred HHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhh
Confidence 22333333332222 0 11 111234556666655554421 23788999999999999988765
Q ss_pred hccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhH--hhHH---HHHHHHHHHHhc--C----------
Q 002876 210 NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA--PYIQ---DIFNITAKAVRE--D---------- 272 (872)
Q Consensus 210 ~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~~---~l~~~~~~~~~~--~---------- 272 (872)
+... .+.+++.+.+.++ -+++|.+|+.|+..+++..-+-+. +.++ +..+.....-.+ .
T Consensus 227 nLIa---Nd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vsk 301 (980)
T KOG2021|consen 227 NLIA---NDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSK 301 (980)
T ss_pred hhhh---chhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHH
Confidence 4432 2578888888875 678899999999998875311111 1111 111111100000 1
Q ss_pred --------------------ChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHH-----------------H
Q 002876 273 --------------------EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFI-----------------K 315 (872)
Q Consensus 273 --------------------~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 315 (872)
+..+... ++..+-+..+.+.+... +.+++.+.....|. +
T Consensus 302 Litg~gvel~~i~s~lnseld~~~kqn---~l~~ll~~vpyllq~l~-~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk 377 (980)
T KOG2021|consen 302 LITGFGVELTIIISQLNSELDTLYKQN---VLSILLEIVPYLLQFLN-NEFDDITAKIFPFLSDYLAFLKKLKALSSPQK 377 (980)
T ss_pred HHhhcceeeehhHhhhhhccCHHHHHH---HHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHHHHHHhhcccccchhh
Confidence 1112221 22222222222222211 01111100000010 1
Q ss_pred hhhhhHHHHHHHHHhccc-----CC-cc-cCCc-cchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhc---Ccchhhh
Q 002876 316 HALPVLVPLLLETLLKQE-----ED-QD-QDEG-AWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT---KQEWRQR 384 (872)
Q Consensus 316 ~~l~~l~~~l~~~l~~~~-----~d-~~-~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~---~~~~~~r 384 (872)
..+..++..+...+++.+ ++ ++ ++|+ .-+.|+.-...++.++..-|.-++..+-.-+...+. ..+|..-
T Consensus 378 ~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqev 457 (980)
T KOG2021|consen 378 VPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEV 457 (980)
T ss_pred ccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 122334444444454432 22 12 1121 236777777777777776665444444444444433 3569999
Q ss_pred HHHHHHHHHhhCCCCCC-------cch--HHHHHHHHHHHH-HhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCcc
Q 002876 385 EAATYAFGSILEGPSPE-------KLV--PLVNIALNFMLT-ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (872)
Q Consensus 385 ~aal~~l~~l~~~~~~~-------~~~--~~~~~i~~~l~~-~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (872)
+.|++.+..++++.... ... ..+..+++.+.. .+..++|+.|.---+..+.++...+. ....
T Consensus 458 E~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~--------~esq 529 (980)
T KOG2021|consen 458 ELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFS--------TESQ 529 (980)
T ss_pred HHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHh--------cchh
Confidence 99999998888765211 111 122233333322 11267899999988999999888774 3456
Q ss_pred chHHHHHHHHH--hccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccC---------Cchhhh
Q 002876 455 NCQQIISVLLQ--SMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRE---------DAGESR 522 (872)
Q Consensus 455 ~~~~il~~l~~--~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~---------~~~~~~ 522 (872)
+++.++...+. ++.. +.+||.+|...+.++++.+ +..+.|+++.|++.+...+... ......
T Consensus 530 ~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlL------kkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fd 603 (980)
T KOG2021|consen 530 KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLL------KKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFD 603 (980)
T ss_pred hhHHHHHHHccchhccccccccchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHcCcCCCcCcccccccccc
Confidence 77778877764 4443 6899999999999999987 6789999999999998887211 000111
Q ss_pred hHHHHHHHHHHHHHccc---cCcHHHHHHHHHHHHHHHHHHH-hhhcCChhH-HHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 002876 523 LRTAAYETLNEVVRCST---DETAPMVMQLVPLIMMELHQTL-EAQKLSSDE-REKQNEIQGLLCGCLQVIIQKLGSSEQ 597 (872)
Q Consensus 523 v~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~l~~~~~ 597 (872)
=+...++++|.++.... +....|...++.+++....-.. .....++++ +....++. .++-+++.+...+....
T Consensus 604 dqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~-~~lmaig~lakgf~~rl- 681 (980)
T KOG2021|consen 604 DQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECH-HILMAIGTLAKGFHIRL- 681 (980)
T ss_pred ccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHH-HHHHHHHHHhhcccccC-
Confidence 12356777777765443 2344455555554443321111 111111111 11111111 11112222222221110
Q ss_pred hhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002876 598 TKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDL 677 (872)
Q Consensus 598 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l 677 (872)
....+- +.+..|..-++.+++.+......+ .+|...-..++.+
T Consensus 682 ------------------------vt~~qv----------g~~~vf~~~ldvil~~ls~f~k~E---~iRsavrft~hRm 724 (980)
T KOG2021|consen 682 ------------------------VTENQV----------GNMVVFSNILDVILVTLSFFNKFE---NIRSAVRFTFHRM 724 (980)
T ss_pred ------------------------cchhcc----------cHHHHHHHHHHHHHHHHhhccccc---hhHHHHHHHHHHH
Confidence 000000 011123344455555555433322 5677777778888
Q ss_pred HHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCC--CCCCcc
Q 002876 678 CRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHT--SGVDDD 755 (872)
Q Consensus 678 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~--~~~d~~ 755 (872)
+..+++++.||+++.++.+++...-. --...+..+..++.....++.+++++++|.+...+-..-.- ...|.+
T Consensus 725 I~~lg~~vlPfipklie~lL~s~d~k-----Emvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsvi~r~a~p~dt~ 799 (980)
T KOG2021|consen 725 IPILGNKVLPFIPKLIELLLSSTDLK-----EMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSVIERIAKPIDTA 799 (980)
T ss_pred HHhcchhhhcchHHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChh
Confidence 88888888888888887775532211 11346677788888888888888888888877654432210 001111
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhc-ccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc
Q 002876 756 -MTEYTNSLRNGILEAFSGIFQG-FKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLG 827 (872)
Q Consensus 756 -~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g 827 (872)
..+ -..+|++.+..+..+.+. ++.-...+..+.|.+.++..+...... ..++-........+..+...+|
T Consensus 800 aa~e-k~~lrksy~~fLqtftn~g~~silat~~n~~~~~~iln~l~~~a~~-y~dpmmQksln~lcnk~v~lwg 871 (980)
T KOG2021|consen 800 AAAE-KILLRKSYCTFLQTFTNNGVTSILATDINRAILPVILNDLVTYAPQ-YIDPMMQKSLNVLCNKIVCLWG 871 (980)
T ss_pred HHHH-HHHHHHHHHHHHHHHhcCCcceeeeccchhhhhhHHHHHhhhcccc-ccCHHHHHHHHHHHHHHHHhcC
Confidence 112 245666666666666543 111101122334455455555433322 2455555555556666665555
No 17
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.93 E-value=3.1e-20 Score=189.09 Aligned_cols=686 Identities=13% Similarity=0.178 Sum_probs=453.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQ-NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~-~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
..+..+|...-+..+..|+.|.+.|..-..+ .+...+..++-++.+...+.+.|++-...+.+.+.+
T Consensus 363 r~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyk------------ 430 (1172)
T KOG0213|consen 363 RKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYK------------ 430 (1172)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHh------------
Confidence 4577788888889999999999999755443 333455566677788888999999998888776653
Q ss_pred ccCCChHHHHHHHHHHH---HhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 002876 82 WLSLDSSVKAQIKSFIL---KTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYI 158 (872)
Q Consensus 82 ~~~l~~~~~~~i~~~ll---~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i 158 (872)
++.-.+-+++..|+ .++.+++...|..--++++.++... .+..++..+---+.+.++.+|.....+++.+
T Consensus 431 ---lDdlvrpYVhkILvViepllided~yar~egreIisnLakaa----Gla~mistmrpDidn~deYVRnttarafavv 503 (1172)
T KOG0213|consen 431 ---LDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAA----GLATMISTMRPDIDNKDEYVRNTTARAFAVV 503 (1172)
T ss_pred ---hcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHh----hhHHHHHhhcCCcccccHHHHHHHHHHHHHH
Confidence 34444444444333 4467888888888888888887654 4455555555556777889999999999888
Q ss_pred hhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHH
Q 002876 159 CEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQA 238 (872)
Q Consensus 159 ~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~ 238 (872)
++.+ -.+.++|++.....+ -.+++-|+..+++..++..++.-... .....++.++...+.|.+..+|..
T Consensus 504 asal--------gip~llpfLkavc~S-kkSwqaRhTgIkivqqIail~Gcsvl--phl~~lv~ii~~gl~De~qkVR~i 572 (1172)
T KOG0213|consen 504 ASAL--------GIPALLPFLKAVCGS-KKSWQARHTGIKIVQQIAILSGCSVL--PHLKPLVKIIEHGLKDEQQKVRTI 572 (1172)
T ss_pred HHHh--------CcHHHHHHHHHHhcc-ccchhhhchhhHHHHHHHHHhcchhh--hhhHHHHHHHHHhhcccchhhhhH
Confidence 7765 145556666555553 55999999999999988765543222 122457788888888999999999
Q ss_pred HHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhh
Q 002876 239 AFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL 318 (872)
Q Consensus 239 ~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (872)
+..++..+++..+..-...++.++..+|..+..........-+.+++.++.. +.. ++..-+-
T Consensus 573 tAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigylipl---md~---------------eya~yyT 634 (1172)
T KOG0213|consen 573 TALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPL---MDA---------------EYASYYT 634 (1172)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhcccc---ccH---------------HHHHHhH
Confidence 9999999998866554556788888898888765444333334444444321 111 2222222
Q ss_pred hhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCc---chhchHHHHHhhhcCcchhhhHHH--------
Q 002876 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD---IVPLVMPFVEENITKQEWRQREAA-------- 387 (872)
Q Consensus 319 ~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~l~~~l~~~~~~~~~~~r~aa-------- 387 (872)
..++-.+..-... +|+ ..++....++...+..-|-+ +...++|.+-... |..|.|.
T Consensus 635 revmlil~rEf~s----PDe-----emkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~f----w~rrmA~drr~ykql 701 (1172)
T KOG0213|consen 635 REVMLILIREFGS----PDE-----EMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSF----WGRRMALDRRNYKQL 701 (1172)
T ss_pred HHHHHHHHHhhCC----ChH-----HHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhh----hhhhhhccccchhhH
Confidence 2333333332221 111 23444445555555444321 1112222222211 4333332
Q ss_pred HHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhc
Q 002876 388 TYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSM 467 (872)
Q Consensus 388 l~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 467 (872)
...-..++...+ ...++..++.-+ .|+.+..|..++.++.++...++.. .+....-..++..++..+
T Consensus 702 v~ttv~ia~KvG-------~~~~v~R~v~~l-kde~e~yrkm~~etv~ri~~~lg~~-----diderleE~lidgil~Af 768 (1172)
T KOG0213|consen 702 VDTTVEIAAKVG-------SDPIVSRVVLDL-KDEPEQYRKMVAETVSRIVGRLGAA-----DIDERLEERLIDGILYAF 768 (1172)
T ss_pred HHHHHHHHHHhC-------chHHHHHHhhhh-ccccHHHHHHHHHHHHHHHhccccc-----cccHHHHHHHHHHHHHHH
Confidence 111112333221 134556666677 8999999999999999999887632 123334455666666666
Q ss_pred cCC-hhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCc-HHH
Q 002876 468 KDV-PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDET-APM 545 (872)
Q Consensus 468 ~d~-~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~-~~~ 545 (872)
+.+ ... ......++..+..+ ...+.||+++|+..++..+.+. .+.+|..+.+.++.++.....-- ...
T Consensus 769 qeqtt~d-~vml~gfg~V~~~l------g~r~kpylpqi~stiL~rLnnk---sa~vRqqaadlis~la~Vlktc~ee~~ 838 (1172)
T KOG0213|consen 769 QEQTTED-SVMLLGFGTVVNAL------GGRVKPYLPQICSTILWRLNNK---SAKVRQQAADLISSLAKVLKTCGEEKL 838 (1172)
T ss_pred Hhcccch-hhhhhhHHHHHHHH------hhccccchHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHHHHHhccHHHH
Confidence 632 111 12334556666655 4568899999999999999887 57899999998888776554211 111
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchh
Q 002876 546 VMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAH 625 (872)
Q Consensus 546 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 625 (872)
+..+=-.+.+.+ +.+.++ +.+.++++|..+++..|... +.+-+..++|.+..+|++....+.
T Consensus 839 m~~lGvvLyEyl---------geeypE----vLgsILgAikaI~nvigm~k-----m~pPi~dllPrltPILknrheKVq 900 (1172)
T KOG0213|consen 839 MGHLGVVLYEYL---------GEEYPE----VLGSILGAIKAIVNVIGMTK-----MTPPIKDLLPRLTPILKNRHEKVQ 900 (1172)
T ss_pred HHHhhHHHHHhc---------CcccHH----HHHHHHHHHHHHHHhccccc-----cCCChhhhcccchHhhhhhHHHHH
Confidence 111112222222 244554 45568888889998888764 777788999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhh--hHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCC
Q 002876 626 EEAMLAIGALAYATGQD--FLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSN 703 (872)
Q Consensus 626 ~~a~~~l~~l~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 703 (872)
+..+..+|.|+...++. ...++...+..+ ..|... ..++|.+|.+.+|.+++..|. .+++..|++.|+..
T Consensus 901 en~IdLvg~IadrgpE~v~aREWMRIcfeLl-elLkah-kK~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvq 972 (1172)
T KOG0213|consen 901 ENCIDLVGTIADRGPEYVSAREWMRICFELL-ELLKAH-KKEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQ 972 (1172)
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHHHHHH-HHHHHH-HHHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHH
Confidence 99999999999877653 334555544433 344433 348999999999999999884 57888888888877
Q ss_pred CCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 002876 704 QLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPK 783 (872)
Q Consensus 704 ~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 783 (872)
++..|.+.-.+|+-.+..+|.- .++|.|.+-... +...|+.++++++.-++.-++
T Consensus 973 --eRq~RvcTtvaIaIVaE~c~pF------tVLPalmneYrt-------------Pe~nVQnGVLkalsf~Feyig---- 1027 (1172)
T KOG0213|consen 973 --ERQNRVCTTVAIAIVAETCGPF------TVLPALMNEYRT-------------PEANVQNGVLKALSFMFEYIG---- 1027 (1172)
T ss_pred --HHHhchhhhhhhhhhhhhcCch------hhhHHHHhhccC-------------chhHHHHhHHHHHHHHHHHHH----
Confidence 5666777777888888877742 467777653322 135788899999998887644
Q ss_pred ccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 002876 784 TQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTL 826 (872)
Q Consensus 784 ~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~ 826 (872)
+.-+.|+-.+.+.+...+.| .+..-|..|..++..++...
T Consensus 1028 -emskdYiyav~PlleDAlmD--rD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1028 -EMSKDYIYAVTPLLEDALMD--RDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred -HHhhhHHHHhhHHHHHhhcc--ccHHHHHHHHHHHHHHhcCC
Confidence 33567999999999999986 57788999999999998754
No 18
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.1e-17 Score=172.91 Aligned_cols=611 Identities=15% Similarity=0.196 Sum_probs=374.6
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 3 AEVTQILLNAQSV-DGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 3 ~~l~~~l~~~~s~-~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
+++.+++..++++ +.+....++++|+..+.+ +..|..-.+++.. +...++|+++|+.|.-.++. +
T Consensus 7 a~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S--~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~~-----------~ 72 (982)
T KOG2022|consen 7 ATVEELVTTLYSHRNHENDAITQKWLQDAQCS--QQGWHFSWQLLQP-DKSSEVQYFGALTLHDKINT-----------R 72 (982)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhh--HHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHHh-----------h
Confidence 4678889999886 888999999999999998 8888877777776 55677899999999999874 5
Q ss_pred ccCCChHHHHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCC-h----hHH-HHHH
Q 002876 82 WLSLDSSVKAQIKSFILKTLSS--P-AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLP-P----HTK-QATL 152 (872)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~--~-~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~-~----~~r-~~al 152 (872)
|...+++....++..++..+.- + ...|-+..+-.++.+.-+..| +.||.-+..++.+++.+. + ..+ ...+
T Consensus 73 ~e~~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~-d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~L 151 (982)
T KOG2022|consen 73 WEECPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVP-DLWPTAIQDVIPTLQGQASPLVLADINCEILL 151 (982)
T ss_pred hccCChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHcc-ccCCchHHHHHHHHhcccCccccchhhHHHHH
Confidence 6778999899999888887653 3 346667777778888777777 799999999988887542 1 222 2223
Q ss_pred HHHHHhhhhccccccc-----------hhhHHHHHHHHHhcccCCC--CCH----HHHHHHHHHHHHhHhhchhhccChh
Q 002876 153 ETLGYICEEVSSDAVE-----------QDHVNKILTAVVQGMNASE--SNN----DVRLAATRALYNALGFAQANFSNDM 215 (872)
Q Consensus 153 ~~l~~i~~~~~~~~l~-----------~~~~~~i~~~l~~~l~~~~--~~~----~vr~~al~~l~~~~~~~~~~~~~~~ 215 (872)
+.|..+..+..--.+. ......+.+.+-..++..+ ... -.+.++++|+..++.++.-...
T Consensus 152 e~Ls~~p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~--- 228 (982)
T KOG2022|consen 152 EVLSFMPAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGM--- 228 (982)
T ss_pred HHhccCcHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccc---
Confidence 4443222221100010 1122233333333333211 122 4578899999988764321100
Q ss_pred hHHHHHHHHHHhhc-----------------------------------CCCHHHHHHH---------------------
Q 002876 216 ERDYIMRVVCEATL-----------------------------------SPEVKIRQAA--------------------- 239 (872)
Q Consensus 216 ~~~~il~~l~~~~~-----------------------------------~~~~~~r~~~--------------------- 239 (872)
..+.+.+.++..+. ......+..+
T Consensus 229 ~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~ 308 (982)
T KOG2022|consen 229 DCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEE 308 (982)
T ss_pred cHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111111110 0000000000
Q ss_pred ------HHHHHHHHHHhHHhhHhhHHHHHHHH----------------HHHHhc-----CChhhHHHHHHHHHHHHHHHH
Q 002876 240 ------FECLVAISSTYYEKLAPYIQDIFNIT----------------AKAVRE-----DEEPVALQAIEFWSSVCDEEI 292 (872)
Q Consensus 240 ------~~~l~~l~~~~~~~~~~~~~~l~~~~----------------~~~~~~-----~~~~v~~~a~~~~~~l~~~~~ 292 (872)
.++...++...-.....+++.+++.. .....- .++.+...++.||..+.+...
T Consensus 309 e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~ 388 (982)
T KOG2022|consen 309 ENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIM 388 (982)
T ss_pred hCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHH
Confidence 11111111111111111222222211 111111 123455677888888887554
Q ss_pred HHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCC------cccCCccchHhHHHHHHHHHHHHHcCCcchh
Q 002876 293 DILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEED------QDQDEGAWNIAMAGGTCLGLVARTVGDDIVP 366 (872)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d------~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 366 (872)
....+.. ...+..+.++..-+++..++..+.-..++ .++.+..-..|+...+++...-..+|+.++.
T Consensus 389 ~~~~e~~-------~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~ 461 (982)
T KOG2022|consen 389 QTINETQ-------QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLD 461 (982)
T ss_pred HhhhccC-------CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3321100 01133455677777888888776532221 1111111145777778888888888998888
Q ss_pred chHHHHHhhhcCcc-----hhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 002876 367 LVMPFVEENITKQE-----WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (872)
Q Consensus 367 ~l~~~l~~~~~~~~-----~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~ 441 (872)
.+...+.+.+.+.+ |..-++.++.+.++++..+ ....+.++.++......--+-.++..-.++...+|.++.+.
T Consensus 462 ~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~-~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l 540 (982)
T KOG2022|consen 462 FLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLG-ETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWL 540 (982)
T ss_pred HHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcC-cchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHH
Confidence 88888888877654 9999999999999999885 55555566665544322113348899999999999999998
Q ss_pred cCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhh
Q 002876 442 HGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGES 521 (872)
Q Consensus 442 ~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~ 521 (872)
.+ ++.|++..+|.+++++.. ++....+...+.++|+.| +..+.||..+++..+-..+..... .+
T Consensus 541 ~e--------~P~~ln~sl~~L~~~Lh~-sk~s~q~i~tl~tlC~~C------~~~L~py~d~~~a~~~e~l~~~~~-~~ 604 (982)
T KOG2022|consen 541 GE--------HPMYLNPSLPLLFQGLHN-SKESEQAISTLKTLCETC------PESLDPYADQFSAVCYEVLNKSNA-KD 604 (982)
T ss_pred hc--------CCcccCchHHHHHHHhcC-chHHHHHHHHHHHHHHhh------hhhCchHHHHHHHHHHHHhccccc-Cc
Confidence 63 577889999999999973 444445667799999988 678999999999999888866543 45
Q ss_pred hhHHHHHHHHHHHHHccc-cCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Q 002876 522 RLRTAAYETLNEVVRCST-DETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY 600 (872)
Q Consensus 522 ~v~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 600 (872)
..|..++.++|.+..... +....|+..++.++++.++.....+. ++++... -....+.+++++.+++.......+
T Consensus 605 S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i---~~~e~~l-~~~~~l~~iS~LftSL~~~~~~~d 680 (982)
T KOG2022|consen 605 SDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGI---DDQENHL-RIAFQLNTISALFTSLINKKDIID 680 (982)
T ss_pred hHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCC---CCHHHHH-HHHHHHHHHHHHHhccCCCCcccc
Confidence 677889999999887765 66788999999999998887654322 2232211 122356788888877753311110
Q ss_pred ---------H-----hhHhHHHHHHHHHHHHhc--cccchhhHHHHHHHHHHHHhhhhh-HhhhHHHHHHHHhhhc
Q 002876 601 ---------V-----FMQYADQMMGLFLRVFAI--RSATAHEEAMLAIGALAYATGQDF-LKYMPEFYKYVEMGLQ 659 (872)
Q Consensus 601 ---------~-----~~~~~~~i~~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~i~~~l~~~l~ 659 (872)
. +......+++.+-+.+.. .+..+-+.++...++=+...++.| .|+++.+.+++.+...
T Consensus 681 ~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~ 756 (982)
T KOG2022|consen 681 TDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLT 756 (982)
T ss_pred ccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcc
Confidence 0 111222333333333322 344566666666555556666678 7889999999988544
No 19
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.90 E-value=5.2e-17 Score=163.05 Aligned_cols=525 Identities=18% Similarity=0.267 Sum_probs=346.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccC
Q 002876 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (872)
Q Consensus 5 l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (872)
+-++.++.+.++...++||++-|.+|+.. |+.|...-.|+.+ +..++.+..|..+|...+.. .|..
T Consensus 16 lDkVVttfyqg~g~~q~qAq~iLtkFq~~--PdaWtkad~IL~~-S~~pqskyiALs~LdklItt-----------kWkl 81 (1053)
T COG5101 16 LDKVVTTFYQGDGRKQEQAQRILTKFQEL--PDAWTKADYILNN-SKLPQSKYIALSLLDKLITT-----------KWKL 81 (1053)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhC--chHHHHHHHHHhc-ccCcchhhhHHHHHHHHHHh-----------hhhh
Confidence 45677888999999999999999999988 9999999999987 66899999999999999984 5677
Q ss_pred CChHHHHHHHHHHHHhcCC--CChHHH-------HHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHH
Q 002876 85 LDSSVKAQIKSFILKTLSS--PAHDAR-------STASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETL 155 (872)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~--~~~~vr-------~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l 155 (872)
+|.+.+..+|+-+++.+.+ .+.++| +.+-.++..|++.++| .+||+++|.+++..+ .+..+.+..+.++
T Consensus 82 lp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP-~nWP~FIpeli~~S~-~s~~vCeNnmivL 159 (1053)
T COG5101 82 LPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWP-RNWPTFIPELINVSQ-ISMEVCENNMIVL 159 (1053)
T ss_pred CCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcc-cccchhhHHHHhhcc-chHHHHhccHHHH
Confidence 8999999999988888653 244444 4566678888999999 699999999998766 4566777777777
Q ss_pred HHhhhhc---cccccc-----------hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHH
Q 002876 156 GYICEEV---SSDAVE-----------QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIM 221 (872)
Q Consensus 156 ~~i~~~~---~~~~l~-----------~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il 221 (872)
..+.++. +.+.+. ...+++|+..+.+.+.- ..++.+-.+.++.+..++.++|-.+.- ...|+
T Consensus 160 klLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~-~~~~SLi~ATLesllrfl~wiPl~yIf---eTnIi 235 (1053)
T COG5101 160 KLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEY-SRDESLIEATLESLLRFLEWIPLDYIF---ETNII 235 (1053)
T ss_pred HHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHhhCchhHHH---HHHHH
Confidence 7666653 222221 23578888888888874 557788889999998888877654321 12344
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHh--HH-------hhH---------------h------------------hHH
Q 002876 222 RVVCEATLSPEVKIRQAAFECLVAISSTY--YE-------KLA---------------P------------------YIQ 259 (872)
Q Consensus 222 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~--~~-------~~~---------------~------------------~~~ 259 (872)
+.+.+-.. ..|+.|...++||..++... |. .+. | ++.
T Consensus 236 eLv~~~f~-s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq 314 (1053)
T COG5101 236 ELVLEHFN-SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQ 314 (1053)
T ss_pred HHHHHHhc-cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHH
Confidence 44443222 34556667777777665432 00 000 0 011
Q ss_pred HHHHHHH-------HHHh--------------------cCChhhHHHHHHHHHHHHHHHHHHHHhcCC----------CC
Q 002876 260 DIFNITA-------KAVR--------------------EDEEPVALQAIEFWSSVCDEEIDILEEYGG----------DF 302 (872)
Q Consensus 260 ~l~~~~~-------~~~~--------------------~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~----------~~ 302 (872)
.+..++. +.++ -.+.++-..+++.|..+...-..-...... .+
T Consensus 315 ~LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~ 394 (1053)
T COG5101 315 KLAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVG 394 (1053)
T ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhcccc
Confidence 1111111 0111 123356677888888876543322211110 00
Q ss_pred --------CCCCCCc-hHhHHHhhhhhHHHHHHHHHhcccC-----Ccc--------cCCccchHhHHHHHHHHHHHHHc
Q 002876 303 --------SGDSDIP-CFYFIKHALPVLVPLLLETLLKQEE-----DQD--------QDEGAWNIAMAGGTCLGLVARTV 360 (872)
Q Consensus 303 --------~~~~~~~-~~~~~~~~l~~l~~~l~~~l~~~~~-----d~~--------~~~~~~~~r~~a~~~l~~l~~~~ 360 (872)
+..+..| .++.-...+..+.-.+.+.|.+.+| +++ .+.|..+..+.-.++|-.++...
T Consensus 395 s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~ 474 (1053)
T COG5101 395 SQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLI 474 (1053)
T ss_pred chhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhh
Confidence 0011122 1233345566666677777766443 111 01123344455567777666655
Q ss_pred CCcchhchHHHHHhhhcCcc--hhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHh----ccCCcHHHHHHHHHHH
Q 002876 361 GDDIVPLVMPFVEENITKQE--WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL----MQDPNNHVKDTTAWTL 434 (872)
Q Consensus 361 ~~~~~~~l~~~l~~~~~~~~--~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l----~~d~~~~vr~~a~~~l 434 (872)
-.+.-..++..+...+.+.+ |..-..-++++|+++...+...-..++-.++..++... ..|....|....+.++
T Consensus 475 v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvv 554 (1053)
T COG5101 475 VDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVV 554 (1053)
T ss_pred hhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeee
Confidence 55555566777777777765 66677788999999877754444455556665555443 2455566666778888
Q ss_pred HHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCC--CCCCCCchhHHHHHHHHHH
Q 002876 435 GRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAI--SPSSPLTPFFQEIVQALLT 511 (872)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~--~~~~~l~~~l~~i~~~l~~ 511 (872)
|++-.++. .+..++..++..++..+++ +..|+.-||..+-.+++.|+... .....-.|++..|+..+-+
T Consensus 555 GQYpRFLk--------ahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~k 626 (1053)
T COG5101 555 GQYPRFLK--------AHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPK 626 (1053)
T ss_pred ccchHHHH--------HHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhh
Confidence 88888764 4677889999999999985 78999999999999999876541 2244556788888888877
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHHccccC--cHHHHHHHHHHHHHHHHHHH
Q 002876 512 VTHREDAGESRLRTAAYETLNEVVRCSTDE--TAPMVMQLVPLIMMELHQTL 561 (872)
Q Consensus 512 ~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~ 561 (872)
...+- .+.-....+++.+.+++..++. ....+..++......|.+..
T Consensus 627 tT~dL---~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv 675 (1053)
T COG5101 627 TTGDL---EPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIV 675 (1053)
T ss_pred hcccC---ChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHH
Confidence 66654 3555568899999999998853 34455566666666666544
No 20
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.89 E-value=3e-18 Score=174.78 Aligned_cols=636 Identities=13% Similarity=0.159 Sum_probs=413.7
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHH
Q 002876 101 LSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAV 179 (872)
Q Consensus 101 l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l 179 (872)
+.+.++.||+..+.+++.++.+. .-++++|.|.....|. ++..|+.++++..+|+.-..-..+ +|+..++..+
T Consensus 485 idn~deYVRnttarafavvasal----gip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvl--phl~~lv~ii 558 (1172)
T KOG0213|consen 485 IDNKDEYVRNTTARAFAVVASAL----GIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVL--PHLKPLVKII 558 (1172)
T ss_pred cccccHHHHHHHHHHHHHHHHHh----CcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhh--hhhHHHHHHH
Confidence 33457899999999999999876 5789999999888886 889999999999999887633344 8899999999
Q ss_pred HhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhh-H
Q 002876 180 VQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPY-I 258 (872)
Q Consensus 180 ~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~-~ 258 (872)
-.++. |....||..+..+++.+.+.... + ..+..+.++..+.+.++......-.+.+++++.++-........| .
T Consensus 559 ~~gl~--De~qkVR~itAlalsalaeaa~P-y-gie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyT 634 (1172)
T KOG0213|consen 559 EHGLK--DEQQKVRTITALALSALAEAATP-Y-GIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYT 634 (1172)
T ss_pred HHhhc--ccchhhhhHHHHHHHHHHHhcCC-c-chHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhH
Confidence 99998 89999999888888887654321 1 112346788887776655444444455555555554333333333 3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CchHh--H-------HHhhhhhHHHHHHHH
Q 002876 259 QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSD-IPCFY--F-------IKHALPVLVPLLLET 328 (872)
Q Consensus 259 ~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~--~-------~~~~l~~l~~~l~~~ 328 (872)
..++-.+...+.+++++.+...+..+...|... .+...|. +.+ ++++. | -+.....++......
T Consensus 635 revmlil~rEf~sPDeemkkivLKVv~qcc~t~-Gv~~~y~-----r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~i 708 (1172)
T KOG0213|consen 635 REVMLILIREFGSPDEEMKKIVLKVVKQCCATD-GVEPAYI-----RFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEI 708 (1172)
T ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHhccc-CCCHHHH-----hhhhhHHHHhhhhhhhhhccccchhhHHHHHHHH
Confidence 477778888889999999998888888877532 0000000 000 11110 0 011112222222221
Q ss_pred Hhccc---------CC-cccCCccchHhHHHHHHHHHHHHHcCCcc-----hhchHHHHHhhhcCcchhhhHHHHHHHHH
Q 002876 329 LLKQE---------ED-QDQDEGAWNIAMAGGTCLGLVARTVGDDI-----VPLVMPFVEENITKQEWRQREAATYAFGS 393 (872)
Q Consensus 329 l~~~~---------~d-~~~~~~~~~~r~~a~~~l~~l~~~~~~~~-----~~~l~~~l~~~~~~~~~~~r~aal~~l~~ 393 (872)
-.+.. +| .|+.+ ..|+...++...+....|..- ...++.-+.-.+....-.. -..+.+|+.
T Consensus 709 a~KvG~~~~v~R~v~~lkde~e---~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d-~vml~gfg~ 784 (1172)
T KOG0213|consen 709 AAKVGSDPIVSRVVLDLKDEPE---QYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTED-SVMLLGFGT 784 (1172)
T ss_pred HHHhCchHHHHHHhhhhccccH---HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccch-hhhhhhHHH
Confidence 11110 11 11112 557777888887777665322 2223332222222221111 134677888
Q ss_pred hhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-Chh
Q 002876 394 ILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPN 472 (872)
Q Consensus 394 l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~ 472 (872)
++.... ....+|+++++..++..| +++.+.||..|+..+++++..+.. .-....+..+=..|...|.. .++
T Consensus 785 V~~~lg-~r~kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlkt------c~ee~~m~~lGvvLyEylgeeypE 856 (1172)
T KOG0213|consen 785 VVNALG-GRVKPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKT------CGEEKLMGHLGVVLYEYLGEEYPE 856 (1172)
T ss_pred HHHHHh-hccccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHh------ccHHHHHHHhhHHHHHhcCcccHH
Confidence 887764 567899999999999999 999999999999999999997742 11223344444556667764 588
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHH
Q 002876 473 VAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPL 552 (872)
Q Consensus 473 v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ 552 (872)
|--....|+..++...+ ...+.|-+..+++.|..++.+. +.+++..++..++.++...++.... .+.+..
T Consensus 857 vLgsILgAikaI~nvig-----m~km~pPi~dllPrltPILknr---heKVqen~IdLvg~IadrgpE~v~a--REWMRI 926 (1172)
T KOG0213|consen 857 VLGSILGAIKAIVNVIG-----MTKMTPPIKDLLPRLTPILKNR---HEKVQENCIDLVGTIADRGPEYVSA--REWMRI 926 (1172)
T ss_pred HHHHHHHHHHHHHHhcc-----ccccCCChhhhcccchHhhhhh---HHHHHHHHHHHHHHHHhcCcccCCH--HHHHHH
Confidence 87777777777766543 4667888899999999999775 6789999999999999998875432 233333
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHH
Q 002876 553 IMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAI 632 (872)
Q Consensus 553 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l 632 (872)
.++.+.... .. -..+|..+.+.++.+....|++ .++..++..|..++...|...-.++
T Consensus 927 cfeLlelLk-------ah---kK~iRRaa~nTfG~IakaIGPq------------dVLatLlnnLkvqeRq~RvcTtvaI 984 (1172)
T KOG0213|consen 927 CFELLELLK-------AH---KKEIRRAAVNTFGYIAKAIGPQ------------DVLATLLNNLKVQERQNRVCTTVAI 984 (1172)
T ss_pred HHHHHHHHH-------HH---HHHHHHHHHhhhhHHHHhcCHH------------HHHHHHHhcchHHHHHhchhhhhhh
Confidence 333332211 01 1246777888899998888876 3666777777776666676667777
Q ss_pred HHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchh
Q 002876 633 GALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPP 712 (872)
Q Consensus 633 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~ 712 (872)
+-++..+|.. .++|.|++-...+ +..|.+..+..++.+.+..|+--..|+-.+.|.|-..+.+. +...|..
T Consensus 985 aIVaE~c~pF------tVLPalmneYrtP-e~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr--D~vhRqt 1055 (1172)
T KOG0213|consen 985 AIVAETCGPF------TVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR--DLVHRQT 1055 (1172)
T ss_pred hhhhhhcCch------hhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc--cHHHHHH
Confidence 7777776642 3778888777644 56899999999999999999988999999999999999887 6778889
Q ss_pred HHHHHHHHHHHhc-----cchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCccccc
Q 002876 713 IFSCFGDIALAIG-----ENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLL 787 (872)
Q Consensus 713 ~~~~l~~i~~~~~-----~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 787 (872)
+.+++..++.... +.+...++-+.|.+++ ....+..+..+++-++-.+++..
T Consensus 1056 a~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle-----------------~sPhviqa~~e~~eg~r~~Lg~~------ 1112 (1172)
T KOG0213|consen 1056 AMNVIKHLALGVPGTGCEDALIHLLNLIWPNILE-----------------TSPHVIQAFDEAMEGLRVALGPQ------ 1112 (1172)
T ss_pred HHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcC-----------------CChHHHHHHHHHHHHHHHHhchH------
Confidence 9999999887532 2233444444444432 12345555666666666654321
Q ss_pred ccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccccc
Q 002876 788 MPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQ 835 (872)
Q Consensus 788 ~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~ 835 (872)
.+++-+.+-|-. ....||..-...+..+-.-..+...++.+
T Consensus 1113 -----~~~~Y~~QGLFH--ParkVR~~yw~vyn~my~~~~dalv~~yp 1153 (1172)
T KOG0213|consen 1113 -----AMLKYCLQGLFH--PARKVRKRYWTVYNSMYHGSQDALVACYP 1153 (1172)
T ss_pred -----HHHHHHHHhccC--cHHHHHHHHHHHHHhHhhcccchhhhccc
Confidence 355555555554 35567766544444443333333444433
No 21
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.88 E-value=7.5e-19 Score=175.56 Aligned_cols=686 Identities=12% Similarity=0.135 Sum_probs=433.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQ-NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~-~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
..+..+|...-+.++..|..+.+.|..-..+ .+...+..++-++.+.+.+.+.|++-..++.+.+..
T Consensus 168 r~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~------------ 235 (975)
T COG5181 168 RDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYG------------ 235 (975)
T ss_pred HhHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHh------------
Confidence 3567777788888999999999999754443 444566667777777778899999998888776652
Q ss_pred ccCCChHHHHHHHHHHH---HhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 002876 82 WLSLDSSVKAQIKSFIL---KTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYI 158 (872)
Q Consensus 82 ~~~l~~~~~~~i~~~ll---~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i 158 (872)
+..-.+.+++..|+ .++.+++.+.|..--+++..++... .+...+..+-.-+.+.++.+|...-.+.+.+
T Consensus 236 ---lddl~~pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~----Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vv 308 (975)
T COG5181 236 ---LDDLKVPYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRC----GLGFSVSSMRPDITSKDEYVRNVTGRAVGVV 308 (975)
T ss_pred ---cccccccceeeEEEEeeccccCccHHHhcccHHHHHHHHHHh----ccceeeeeccCCcccccHHHHHHHHHHHHHH
Confidence 22222223332222 3466888888888888888887654 2222333333345667888998888888888
Q ss_pred hhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHH
Q 002876 159 CEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQA 238 (872)
Q Consensus 159 ~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~ 238 (872)
++.+ -+++++|++-....+ -.+++-|+..+++..++..+...... .....++..+..++.|....+|..
T Consensus 309 a~al--------gv~~llpfl~a~c~S-rkSw~aRhTgiri~qqI~~llG~s~l--~hl~~l~~ci~~~l~D~~~~vRi~ 377 (975)
T COG5181 309 ADAL--------GVEELLPFLEALCGS-RKSWEARHTGIRIAQQICELLGRSRL--SHLGPLLKCISKLLKDRSRFVRID 377 (975)
T ss_pred HHhh--------CcHHHHHHHHHHhcC-ccchhhhchhhHHHHHHHHHhCccHH--hhhhhHHHHHHHHhhccceeeeeh
Confidence 7654 145556665554443 55899999999999988776543322 122457888888888998999999
Q ss_pred HHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhh
Q 002876 239 AFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL 318 (872)
Q Consensus 239 ~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (872)
+...|+.+++..+..-...++.++..+|...+.........-+.+.+.++. -+ .++|.-.+-
T Consensus 378 tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iip---lm---------------~peYa~h~t 439 (975)
T COG5181 378 TANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIP---LM---------------SPEYACHDT 439 (975)
T ss_pred hHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccc---cC---------------ChHhhhhhH
Confidence 999999999887665556678888888888765433322222222222211 00 112333333
Q ss_pred hhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHH--------HH
Q 002876 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAAT--------YA 390 (872)
Q Consensus 319 ~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal--------~~ 390 (872)
...+.+++..+...+| + . ++ -.......|...+...--.+..-+...+-++-|..|.|+- .+
T Consensus 440 re~m~iv~ref~spde-----e--m--kk-~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~t 509 (975)
T COG5181 440 REHMEIVFREFKSPDE-----E--M--KK-DLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLT 509 (975)
T ss_pred HHHHHHHHHHhCCchh-----h--c--ch-hHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehh
Confidence 3444555554432111 1 0 11 1122223333333221111222222223345576665541 11
Q ss_pred HHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-
Q 002876 391 FGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD- 469 (872)
Q Consensus 391 l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d- 469 (872)
-..++...+ -+.+...++..+ +|+....|..++.+..++...++-. .+.......++..++..++.
T Consensus 510 tvilAk~~g-------~~~v~~kil~~~-~De~ep~r~m~a~~vsri~~~lg~~-----~~dErleerl~d~il~Afqeq 576 (975)
T COG5181 510 TVILAKMGG-------DPRVSRKILEYY-SDEPEPYRKMNAGLVSRIFSRLGRL-----GFDERLEERLYDSILNAFQEQ 576 (975)
T ss_pred HHHHHHHcC-------ChHHHHHHHhhc-cCCcchhhhhhhHHHHHHHHhcccc-----cccHHHHHHHHHHHHHHHHhc
Confidence 111222111 144566777788 9998888998888888888877521 12233334445555555542
Q ss_pred C--hhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHcc---ccCcHH
Q 002876 470 V--PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCS---TDETAP 544 (872)
Q Consensus 470 ~--~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~---~~~~~~ 544 (872)
. ..+.-. ++++..-.. .-...||++.|+..++..+.+. .+.+|..+.+..+.++... ++ ..
T Consensus 577 ~~t~~~il~---~f~tv~vsl------~~r~kp~l~~ivStiL~~L~~k---~p~vR~~aadl~~sl~~vlk~c~e--~~ 642 (975)
T COG5181 577 DTTVGLILP---CFSTVLVSL------EFRGKPHLSMIVSTILKLLRSK---PPDVRIRAADLMGSLAKVLKACGE--TK 642 (975)
T ss_pred cccccEEEe---cccceeeeh------hhccCcchHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHhcch--HH
Confidence 1 121111 111111111 3456789999999999999887 4778888888777766544 32 11
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccch
Q 002876 545 MVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATA 624 (872)
Q Consensus 545 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 624 (872)
.+..+=..+.+.+ +.+.++. .+.++.++..+....+-.. ++|-+..++|.+..+|.+....+
T Consensus 643 ~l~klg~iLyE~l---------ge~ypEv----Lgsil~Ai~~I~sv~~~~~-----mqpPi~~ilP~ltPILrnkh~Kv 704 (975)
T COG5181 643 ELAKLGNILYENL---------GEDYPEV----LGSILKAICSIYSVHRFRS-----MQPPISGILPSLTPILRNKHQKV 704 (975)
T ss_pred HHHHHhHHHHHhc---------CcccHHH----HHHHHHHHHHHhhhhcccc-----cCCchhhccccccHhhhhhhHHH
Confidence 1222222233332 2445553 3456666666766655442 67788899999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhh--HhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccC
Q 002876 625 HEEAMLAIGALAYATGQDF--LKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSS 702 (872)
Q Consensus 625 ~~~a~~~l~~l~~~~~~~~--~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (872)
....+..+|.++...++.. ..++...+..+ ..|.+. +.++|.+|...+|.+++..|. .+++..|++.|+.
T Consensus 705 ~~nti~lvg~I~~~~peyi~~rEWMRIcfeLv-d~Lks~-nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkv 776 (975)
T COG5181 705 VANTIALVGTICMNSPEYIGVREWMRICFELV-DSLKSW-NKEIRRNATETFGCISRAIGP------QDVLDILLNNLKV 776 (975)
T ss_pred hhhHHHHHHHHHhcCcccCCHHHHHHHHHHHH-HHHHHh-hHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchH
Confidence 9999999999998877532 34555444433 334433 348999999999999999874 5788888888887
Q ss_pred CCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 002876 703 NQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSP 782 (872)
Q Consensus 703 ~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 782 (872)
. ++..|.....+++-.+..+|.- .++|.|..-... +...|+.++++++.-++.-++
T Consensus 777 q--eRq~RvctsvaI~iVae~cgpf------sVlP~lm~dY~T-------------Pe~nVQnGvLkam~fmFeyig--- 832 (975)
T COG5181 777 Q--ERQQRVCTSVAISIVAEYCGPF------SVLPTLMSDYET-------------PEANVQNGVLKAMCFMFEYIG--- 832 (975)
T ss_pred H--HHHhhhhhhhhhhhhHhhcCch------hhHHHHHhcccC-------------chhHHHHhHHHHHHHHHHHHH---
Confidence 7 5677777888888888888842 467777643221 135788899999888887643
Q ss_pred cccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc
Q 002876 783 KTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLG 827 (872)
Q Consensus 783 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g 827 (872)
+.-+.|+-.+.+.+...+.| .+..-|..|+..|..++..+.
T Consensus 833 --~~s~dYvy~itPlleDAltD--rD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 833 --QASLDYVYSITPLLEDALTD--RDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred --HHHHHHHHHhhHHHHhhhcc--cchHHHHHHHHHHHHHhcCCC
Confidence 34567999999999999886 678889999999999998764
No 22
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=1.3e-17 Score=183.85 Aligned_cols=630 Identities=14% Similarity=0.199 Sum_probs=408.4
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCC----CCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002876 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH----KQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (872)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~----~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~ 160 (872)
.+......+.+.+...+.++++..|.+.+.=+=.+.++.... -..+++...+...+.+.++...+.|.+.++-+.+
T Consensus 811 ~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe 890 (1702)
T KOG0915|consen 811 VNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE 890 (1702)
T ss_pred cCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe
Confidence 344455678888999999999999999988877777776421 2467888889999999999999999999987665
Q ss_pred hccccccchhhHHHHHHHHHhcccCC---CCCHHHHH-H---------HHHHHHHhHhhchhhccChhhHHHHHHHHHHh
Q 002876 161 EVSSDAVEQDHVNKILTAVVQGMNAS---ESNNDVRL-A---------ATRALYNALGFAQANFSNDMERDYIMRVVCEA 227 (872)
Q Consensus 161 ~~~~~~l~~~~~~~i~~~l~~~l~~~---~~~~~vr~-~---------al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~ 227 (872)
.- ...+.+.-++.++..+..+=... +.+.++-. . -+.+...++.. .+...+ +.++--..++
T Consensus 891 lg-d~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~L-ASdl~q----PdLVYKFM~L 964 (1702)
T KOG0915|consen 891 LG-DSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNL-ASDLGQ----PDLVYKFMQL 964 (1702)
T ss_pred cC-CchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHH-HhhcCC----hHHHHHHHHH
Confidence 43 22332344555555554321110 01111100 0 00011111100 001111 1222222223
Q ss_pred hc-CCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 002876 228 TL-SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDS 306 (872)
Q Consensus 228 ~~-~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 306 (872)
.+ +..|..|+.|.-.+..++....+.+.||+++++|-+++.=-|++..|+..-...|..++...
T Consensus 965 Anh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~--------------- 1029 (1702)
T KOG0915|consen 965 ANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDS--------------- 1029 (1702)
T ss_pred hhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccCh---------------
Confidence 32 34688899999999999999999999999999999988888999999988888898887532
Q ss_pred CCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHH
Q 002876 307 DIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREA 386 (872)
Q Consensus 307 ~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~a 386 (872)
.+.+..|+..++.- +..++.+..|++|++
T Consensus 1030 ----k~~vd~y~neIl~e-----------------------------------------------LL~~lt~kewRVRea 1058 (1702)
T KOG0915|consen 1030 ----KKVVDEYLNEILDE-----------------------------------------------LLVNLTSKEWRVREA 1058 (1702)
T ss_pred ----HHHHHHHHHHHHHH-----------------------------------------------HHHhccchhHHHHHH
Confidence 12233333222222 223455677999999
Q ss_pred HHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHH---HHHHHhhhhccCCCCCCcccCccchHHHHHHH
Q 002876 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTA---WTLGRMFEFLHGSTLETPIINQGNCQQIISVL 463 (872)
Q Consensus 387 al~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~---~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l 463 (872)
++.++..+..+...+.+.+.++.++..++..+ .|-...||++|- .++++++....+. ..+....+.+..++|.+
T Consensus 1059 sclAL~dLl~g~~~~~~~e~lpelw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~--~~~~~~~~~l~~iLPfL 1135 (1702)
T KOG0915|consen 1059 SCLALADLLQGRPFDQVKEKLPELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDV--TNGAKGKEALDIILPFL 1135 (1702)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccc--CCcccHHHHHHHHHHHH
Confidence 99999999999876778888999999999999 999999999874 5566666555432 22344567888888988
Q ss_pred HH-h-ccCChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhh-----------HHHHHHH
Q 002876 464 LQ-S-MKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRL-----------RTAAYET 530 (872)
Q Consensus 464 ~~-~-l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v-----------~~~~~~~ 530 (872)
+. + +.+-+.||..+...+..+.+.. +..+.||++.+++.+++....-+ +.+ ...+++.
T Consensus 1136 l~~gims~v~evr~~si~tl~dl~Kss------g~~lkP~~~~LIp~ll~~~s~lE---~~vLnYls~r~~~~e~ealDt 1206 (1702)
T KOG0915|consen 1136 LDEGIMSKVNEVRRFSIGTLMDLAKSS------GKELKPHFPKLIPLLLNAYSELE---PQVLNYLSLRLINIETEALDT 1206 (1702)
T ss_pred hccCcccchHHHHHHHHHHHHHHHHhc------hhhhcchhhHHHHHHHHHccccc---hHHHHHHHHhhhhhHHHHHHH
Confidence 75 2 3235789999999999998865 67899999999999999876543 221 1122222
Q ss_pred --------------HHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 002876 531 --------------LNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSE 596 (872)
Q Consensus 531 --------------l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 596 (872)
++.++.... ...+.+++|.+++.+...+.. ..+..+...+..++.+++.+
T Consensus 1207 ~R~s~aksspmmeTi~~ci~~iD---~~vLeelip~l~el~R~sVgl------------~Tkvg~A~fI~~L~~r~~~e- 1270 (1702)
T KOG0915|consen 1207 LRASAAKSSPMMETINKCINYID---ISVLEELIPRLTELVRGSVGL------------GTKVGCASFISLLVQRLGSE- 1270 (1702)
T ss_pred HHHhhhcCCcHHHHHHHHHHhhh---HHHHHHHHHHHHHHHhccCCC------------CcchhHHHHHHHHHHHhccc-
Confidence 222222221 234556666666666543320 12334667888899999988
Q ss_pred chhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhh-hhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002876 597 QTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQ-DFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVG 675 (872)
Q Consensus 597 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~ 675 (872)
+.||...++..++..+.+.++.++..--.++|.+++...+ ++.+++..++-.++. ..+ ..++.++..+.
T Consensus 1271 -----mtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~---k~e--s~~siscatis 1340 (1702)
T KOG0915|consen 1271 -----MTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLG---KDE--SLKSISCATIS 1340 (1702)
T ss_pred -----cCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhc---cCC--CccchhHHHHH
Confidence 9999999999999999999999999999999999988775 777887776665542 222 23467777777
Q ss_pred HHHHHHhccccccHHHHHHHHHHHccCCC-CCCCCchhHHHHHHHHHHHhccchHH-hHHHHHHHHHHHHhhccCCCCCC
Q 002876 676 DLCRALEDKILPYCDGIMTQLLKDLSSNQ-LHRSVKPPIFSCFGDIALAIGENFEK-YLMYAMPMLQSAAELSVHTSGVD 753 (872)
Q Consensus 676 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~v~~~~~~~l~~i~~~~~~~~~~-~l~~il~~l~~~l~~~~~~~~~d 753 (872)
++..+.++.+..|...++|.++-...... .+.+.... .+.++.. .|..-.+ |.++++..+.....+.
T Consensus 1341 ~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~d---vW~e~vs-ggagtvrl~~~eiLn~iceni~nn------- 1409 (1702)
T KOG0915|consen 1341 NIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWND---VWAELVS-GGAGTVRLYLLEILNLICENITNN------- 1409 (1702)
T ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHhCC-CCcchhhhhHHHHHHHHHHHhccc-------
Confidence 78888888899999999998876654431 01111111 2222211 2223333 6777766666544332
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccc
Q 002876 754 DDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPL 833 (872)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~ 833 (872)
+...+|.++..++..+....... .-.|++..+.+.+..-+.. +.++=++..+.++......++..+...
T Consensus 1410 -----~~w~lr~q~Akai~~~a~~~sss----~~~p~ilkl~~~ll~~L~G--RiwdGKe~iLKAl~~~~~a~~~~v~~~ 1478 (1702)
T KOG0915|consen 1410 -----ESWKLRKQAAKAIRVIAEGLSSS----APIPVILKLALSLLDTLNG--RIWDGKEEILKALASAFEAGLADVKRN 1478 (1702)
T ss_pred -----hHHHHHHHHHHHHHHHccccccc----CChHHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHHHHhHHHHHHh
Confidence 34578888888877777664433 1226777777777666664 344444444445544444444444444
Q ss_pred ccCchHHHHHHHHHh
Q 002876 834 IQQSVSSKDFLNECL 848 (872)
Q Consensus 834 ~~~~~~v~~~l~~~~ 848 (872)
++. +....+.++.
T Consensus 1479 ~~s--i~~A~~~e~s 1491 (1702)
T KOG0915|consen 1479 MSS--IEHAVMEEVS 1491 (1702)
T ss_pred chH--HHHHHHHHHH
Confidence 442 4555555444
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.85 E-value=1.5e-16 Score=187.16 Aligned_cols=767 Identities=14% Similarity=0.105 Sum_probs=449.1
Q ss_pred hHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcC---------hhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccch
Q 002876 3 AEVTQILLNAQSV--DGTVRKQAEESLKQYQEQN---------LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKE 71 (872)
Q Consensus 3 ~~l~~~l~~~~s~--~~~~r~~a~~~L~~~~~~~---------~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~ 71 (872)
+++..+++.+.+. +.+.|++|...|-.+.+.+ -.++++.|...|.+. +..+|..|+..|.+.-...
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg--~~~vk~nAaaaL~nLS~~e- 89 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG--TLGAKVNAAAVLGVLCKEE- 89 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCH-
Confidence 4678888888766 6788999999998887664 245778888998753 6888988887777654310
Q ss_pred hhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCc------hhHHHHHHHhhcCCC-
Q 002876 72 QHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQW------PELIGALLSNIHQLP- 144 (872)
Q Consensus 72 ~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~------~~l~~~l~~~l~~~~- 144 (872)
.... .-......+.|+..|.+.+...|..++.+|..++........| ...+|.|+..+++++
T Consensus 90 ~nk~-----------~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk 158 (2102)
T PLN03200 90 DLRV-----------KVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNK 158 (2102)
T ss_pred HHHH-----------HHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCch
Confidence 0000 0011234456888898889999999999999998752100122 567889999998763
Q ss_pred --hhHHHHHHHHHHHhhhhccccccchh-hHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHH
Q 002876 145 --PHTKQATLETLGYICEEVSSDAVEQD-HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIM 221 (872)
Q Consensus 145 --~~~r~~al~~l~~i~~~~~~~~l~~~-~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il 221 (872)
..++..+..+|..++..- .... .. .-...+|.++..+. ++++.++..|+.++..++...++.-. .......+
T Consensus 159 ~d~~L~~~Av~AL~nLs~~~-en~~-~~IIeaGaVp~LV~LLs--S~d~~lQ~eAa~aLa~Lass~ee~~~-aVIeaGaV 233 (2102)
T PLN03200 159 QDKVVEGLLTGALRNLCGST-DGFW-SATLEAGGVDILVKLLS--SGNSDAQANAASLLARLMMAFESSIS-KVLDAGAV 233 (2102)
T ss_pred hhHHHHHHHHHHHHHHhcCc-cchH-HHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCChHHHH-HHHHCCCH
Confidence 234455667777777653 2111 11 11336777888887 67889999999988776543222110 00112356
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHHHHHhHHhhHhhHH-HHHHHHHHHHhcCC---------hhhHHHHHHHHHHHHHH
Q 002876 222 RVVCEATLS-PEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDE---------EPVALQAIEFWSSVCDE 290 (872)
Q Consensus 222 ~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~---------~~v~~~a~~~~~~l~~~ 290 (872)
+.+.+++.+ +++.+|..|..+|..++...++.-..... .-++.++..+..+. ...+..|.-.+..++..
T Consensus 234 P~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 234 KQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 788888864 56789999999999999865443221111 33444444444333 23467777777777753
Q ss_pred HHHHHHhcCCC-CCCCCCC----chH--hHH----------Hhhh--hhHHHHHHHHHhcccCCcccCCccchHhHHHHH
Q 002876 291 EIDILEEYGGD-FSGDSDI----PCF--YFI----------KHAL--PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGT 351 (872)
Q Consensus 291 ~~~~~~~~~~~-~~~~~~~----~~~--~~~----------~~~l--~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~ 351 (872)
...+....... ...+... .+. .+. ...+ ..+.+.|.+.+...+.. -+...+..
T Consensus 314 ~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~--------~vqe~V~e 385 (2102)
T PLN03200 314 MSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTK--------LVQERIIE 385 (2102)
T ss_pred chhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCc--------hhHHHHHH
Confidence 21111000000 0000000 000 000 0000 00111122221110000 00111112
Q ss_pred HHHHHHHHcCCcch------hchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCcH
Q 002876 352 CLGLVARTVGDDIV------PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNN 424 (872)
Q Consensus 352 ~l~~l~~~~~~~~~------~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~ 424 (872)
+| ...+|.... ....+.+...+...+...+..++.++..++.+.. +...... ...+|.++..| .+++.
T Consensus 386 AL---asl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~-e~~~aIi~~ggIp~LV~LL-~s~s~ 460 (2102)
T PLN03200 386 AL---ASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKG-GLWEALGGREGVQLLISLL-GLSSE 460 (2102)
T ss_pred HH---HHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHcCcHHHHHHHH-cCCCH
Confidence 21 111111100 0112223334444556788999999999987742 2222222 34679999999 88999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhH-
Q 002876 425 HVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF- 502 (872)
Q Consensus 425 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l- 502 (872)
.++..++++++.++..... ....-.-...+|.|++.|.. +++++..|+|+|.+++.. .......+
T Consensus 461 ~iQ~~A~~~L~nLa~~nde------nr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-------~~qir~iV~ 527 (2102)
T PLN03200 461 QQQEYAVALLAILTDEVDE------SKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-------SEDIRACVE 527 (2102)
T ss_pred HHHHHHHHHHHHHHcCCHH------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-------cHHHHHHHH
Confidence 9999999999999864321 00001112467778888875 689999999999999753 11122222
Q ss_pred -HHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 002876 503 -QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLL 581 (872)
Q Consensus 503 -~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 581 (872)
...++.++..+.+. +++.+..+.++|..++...... .++.++..+. .+++ ..+..+
T Consensus 528 ~aGAIppLV~LL~sg---d~~~q~~Aa~AL~nLi~~~d~~-------~I~~Lv~LLl---------sdd~----~~~~~a 584 (2102)
T PLN03200 528 SAGAVPALLWLLKNG---GPKGQEIAAKTLTKLVRTADAA-------TISQLTALLL---------GDLP----ESKVHV 584 (2102)
T ss_pred HCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHhccchh-------HHHHHHHHhc---------CCCh----hHHHHH
Confidence 13566777777665 4678889999999998765432 1233443332 1222 223346
Q ss_pred HHHHHHHHHHhCCCcchhhHhhHh--HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHh-hhHHHHHHHHhhh
Q 002876 582 CGCLQVIIQKLGSSEQTKYVFMQY--ADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLK-YMPEFYKYVEMGL 658 (872)
Q Consensus 582 ~~~l~~l~~~l~~~~~~~~~~~~~--~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~i~~~l~~~l 658 (872)
+.++..++......+. .... ....++.+.+++++++...++.|..+++.++..-.+.... .....+|.++..+
T Consensus 585 L~vLgnIlsl~~~~d~----~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LL 660 (2102)
T PLN03200 585 LDVLGHVLSVASLEDL----VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLL 660 (2102)
T ss_pred HHHHHHHHhhcchhHH----HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH
Confidence 6677666554332210 1110 1357788999999999999999999999998755443332 2345788888888
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhccccc-cHH-HHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhH-HHH
Q 002876 659 QNFEDYQVCAITVGVVGDLCRALEDKILP-YCD-GIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYL-MYA 735 (872)
Q Consensus 659 ~~~~~~~v~~~a~~~l~~l~~~~~~~~~~-~~~-~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l-~~i 735 (872)
++. +.++++.+.++|+.+.+.....-.. ++. ..++.|++++.++ +..++..++.+++.++..-... .... ...
T Consensus 661 ss~-~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~--d~~v~e~Al~ALanLl~~~e~~-~ei~~~~~ 736 (2102)
T PLN03200 661 TNN-TEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS--SIEVAEQAVCALANLLSDPEVA-AEALAEDI 736 (2102)
T ss_pred hcC-ChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC--ChHHHHHHHHHHHHHHcCchHH-HHHHhcCc
Confidence 865 4589999999999998744322212 232 4788999999887 6789999999999998754322 2222 356
Q ss_pred HHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchH--HHHHHHHHHhcCCCCCHHHHH
Q 002876 736 MPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAP--HILQFLDSLYMEKDMDDVVTK 813 (872)
Q Consensus 736 l~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~v~~ 813 (872)
++.|.+.++.. + ...|+.+..++..+...-.. .+.+..|+. ..+..+..+|...+.+...-.
T Consensus 737 I~~Lv~lLr~G------~-------~~~k~~Aa~AL~~L~~~~~~---~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~ 800 (2102)
T PLN03200 737 ILPLTRVLREG------T-------LEGKRNAARALAQLLKHFPV---DDVLKDSVQCRGTVLALVDLLNSTDLDSSATS 800 (2102)
T ss_pred HHHHHHHHHhC------C-------hHHHHHHHHHHHHHHhCCCh---hHHHHHHHHHhCcHHHHHHHHhcCCcchhhHH
Confidence 78888888765 2 35778888888777765221 122334433 245556667765334444444
Q ss_pred HHHHHHHHHHHHhc-CCcc--cc-----ccCchHHHHHHHHHhcCCChhHHHHHHHHHH
Q 002876 814 TAIGVLGDLADTLG-SNAG--PL-----IQQSVSSKDFLNECLSSDDHMIKESAEWAKL 864 (872)
Q Consensus 814 ~a~~~l~~i~~~~g-~~~~--~~-----~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~ 864 (872)
.++..+..+++.-+ ..+. || .|. .+.++...+ ....+.+.+-|--+..
T Consensus 801 ~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~--~l~~l~~~l-~~~~p~~~~kai~il~ 856 (2102)
T PLN03200 801 EALEALALLARTKGGANFSHPPWAVLAEVPS--SLEPLVRCL-AEGHPLVQDKAIEILS 856 (2102)
T ss_pred HHHHHHHHHHhhcccCCCCCCchhhHHhccC--chHHHHHHH-HcCChHHHHHHHHHHH
Confidence 58999999999532 2221 22 112 244555544 4556666665544443
No 24
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.85 E-value=2.4e-16 Score=166.17 Aligned_cols=574 Identities=14% Similarity=0.135 Sum_probs=314.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccC
Q 002876 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (872)
Q Consensus 5 l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (872)
++..+....|+++..++.||+.|.+++++ +||...|.++..+...+-++|+.|++.+||+++++|+... -..
T Consensus 6 vv~~~~~aqs~~p~s~k~AE~~Lrqwe~q--~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~------~~~ 77 (947)
T COG5657 6 VVKQLDLAQSPDPPSVKCAEERLRQWEKQ--HGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREEN------GNS 77 (947)
T ss_pred HHHHHHhhcCCCCchHhhHHHHHHhhhcc--ccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhc------ccC
Confidence 34567888999999999999999999999 8999999999998778999999999999999999998532 234
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccc
Q 002876 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS 164 (872)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~ 164 (872)
+.++....||..++.++-+.++.+..+.|.+++.+|+.++| ..||.+++.|...+++.|...-.+.+.+++.+++.+.+
T Consensus 78 i~p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfP-deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~ 156 (947)
T COG5657 78 ILPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFP-DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRR 156 (947)
T ss_pred CCCccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCc-ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhh
Confidence 56666669999999999998888888999999999999999 89999999999999998888888899999999998732
Q ss_pred cccc----hhhHHHHHHHHHhcccCCCCCHHHHH----H-------HHHHHHHhHhhchhhccChh-----hHHHHHHHH
Q 002876 165 DAVE----QDHVNKILTAVVQGMNASESNNDVRL----A-------ATRALYNALGFAQANFSNDM-----ERDYIMRVV 224 (872)
Q Consensus 165 ~~l~----~~~~~~i~~~l~~~l~~~~~~~~vr~----~-------al~~l~~~~~~~~~~~~~~~-----~~~~il~~l 224 (872)
.... ....+.+.+.+.+.+...-+.+..+. . +++.+..+.. -++++.. ..+..+...
T Consensus 157 l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~---~~~qdi~eFfEd~l~~~m~~F 233 (947)
T COG5657 157 LFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYD---LGFQDIPEFFEDNLDKFMEHF 233 (947)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHH---hcCCChhHHHHHHHHHHHHHH
Confidence 1111 12233333333333322112222211 2 2333332222 1121110 112334444
Q ss_pred HHhhcCCCHHHHH-------------HHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCCh-----hhHHHHHHHHHH
Q 002876 225 CEATLSPEVKIRQ-------------AAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEE-----PVALQAIEFWSS 286 (872)
Q Consensus 225 ~~~~~~~~~~~r~-------------~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~v~~~a~~~~~~ 286 (872)
..+++-..+..+. ..+..+..+...+|+.+.+++-+.++.+++.+++-.+ .+...++.++..
T Consensus 234 ~klls~~~~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~ 313 (947)
T COG5657 234 CKLLSYSNPVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLIN 313 (947)
T ss_pred HHHHhhcchhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHH
Confidence 4444322333332 3555555566667888888777888888888765222 233444544444
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCc-hHhHHHhhhhhHHHHHHHH-HhcccCCcc--------------cCCccchHhHHHH
Q 002876 287 VCDEEIDILEEYGGDFSGDSDIP-CFYFIKHALPVLVPLLLET-LLKQEEDQD--------------QDEGAWNIAMAGG 350 (872)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~l~~~-l~~~~~d~~--------------~~~~~~~~r~~a~ 350 (872)
+.... .+++. + ..+........++..+... +.-.++|-+ ..+-..++|.++.
T Consensus 314 v~k~~---irk~~---------e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~ 381 (947)
T COG5657 314 VIKYP---IRKTA---------EVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIE 381 (947)
T ss_pred hhccc---cHHHH---------HHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHH
Confidence 33210 00000 0 0011122233333333221 111222111 0112346677788
Q ss_pred HHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHH-------HHHhccC--
Q 002876 351 TCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFM-------LTALMQD-- 421 (872)
Q Consensus 351 ~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l-------~~~l~~d-- 421 (872)
+.++.+-..+|+-..+++...+.+..+.++ ....+...+..++... .....+..+++.+ ...+ -+
T Consensus 382 ~~l~~~f~~~~~i~~~~~~~~ie~~~t~P~--~~d~~~~~~a~~a~~g---~g~~av~~~~~~v~~~~~~~~pd~-~s~~ 455 (947)
T COG5657 382 NELKDLFDVFGRIAVGHELTVIESEATTPN--ILDEARQLFAAYASFG---LGVEAVNRMVDFVKFLGSIIYPDL-LSPN 455 (947)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHhcCch--HHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHhcCccc-cCcc
Confidence 888888788886667788888887776662 2222222222222111 0111122222211 1111 11
Q ss_pred --CcHHHHHH-HHHHHHHhhhhccCCCCCCcccCccchHHHHH--HHHHhccC--ChhHHHHHHHHHHHHHHhcccCCCC
Q 002876 422 --PNNHVKDT-TAWTLGRMFEFLHGSTLETPIINQGNCQQIIS--VLLQSMKD--VPNVAEKACGALYFLAQGFEDAISP 494 (872)
Q Consensus 422 --~~~~vr~~-a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~--~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~ 494 (872)
.+.+++.. +..++..-..... ........+. .....+.+ +..+--+...+..++.+.+.. .
T Consensus 456 ~~~~~ri~~~~i~~i~~~r~~l~~---------~~~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~---~ 523 (947)
T COG5657 456 EIIHLRILRSRIAYILTFRNQLDS---------SELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNF---S 523 (947)
T ss_pred cCceeEEehhccchheechhhhhh---------hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccc---c
Confidence 12333222 2222111111000 0000111111 11222221 122222223333333333211 1
Q ss_pred CCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHH
Q 002876 495 SSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQ 574 (872)
Q Consensus 495 ~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 574 (872)
+....+-+++++-.+++.+...+ ...-+...+++++.++...+....|...++++.+.+.+....+ .+..+.
T Consensus 524 ~~~~~~~lenl~~lvl~~~as~~--~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~k----nps~p~-- 595 (947)
T COG5657 524 VCSKIGLLENLILLVLSLMASPS--SLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAK----NPSNPQ-- 595 (947)
T ss_pred cccccccHHHHHHHHHHhcCCcc--hhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHcc----CCccHH--
Confidence 22334455666666677776655 3445678899999999999998888878888888777765432 233332
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHhh
Q 002876 575 NEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSAT-AHEEAMLAIGALAYATG 640 (872)
Q Consensus 575 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~-~~~~a~~~l~~l~~~~~ 640 (872)
+.....+.+++++..... ..+..++.+...+...... +-+.+...++.+.....
T Consensus 596 --~~h~~fe~I~al~~~~~~----------~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s 650 (947)
T COG5657 596 --FAHYTFEDIGALVFLKSG----------MCEITIPTLVLALVPEFPVLLSEDATELWSYVLQLLS 650 (947)
T ss_pred --HHHHHHHHHHHHHHhhhc----------ccccchHHHHHhhCccchhhhhhhHHHHHHHHHHHHh
Confidence 222355566666554332 1223333343333333222 23566666665554443
No 25
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.84 E-value=1.8e-16 Score=158.83 Aligned_cols=627 Identities=12% Similarity=0.112 Sum_probs=393.7
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHH
Q 002876 102 SSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVV 180 (872)
Q Consensus 102 ~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~ 180 (872)
.+.++.||+..+.+++.++.+. .-++++|.|.....+. ++..|+.++++..+|+.-..-..+ +++..++..+.
T Consensus 291 ~~~deYVRnvt~ra~~vva~al----gv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l--~hl~~l~~ci~ 364 (975)
T COG5181 291 TSKDEYVRNVTGRAVGVVADAL----GVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRL--SHLGPLLKCIS 364 (975)
T ss_pred ccccHHHHHHHHHHHHHHHHhh----CcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHH--hhhhhHHHHHH
Confidence 3557899999999999999876 5688888888888776 789999999999999987743344 88899999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH-hHHhhHhhHH
Q 002876 181 QGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISST-YYEKLAPYIQ 259 (872)
Q Consensus 181 ~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~-~~~~~~~~~~ 259 (872)
..+. |.+..||..+..+++.+.+..... ..+..+.++..+.+..+......-...+++.+.++-. .|+....+..
T Consensus 365 ~~l~--D~~~~vRi~tA~alS~lae~~~Py--gie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tr 440 (975)
T COG5181 365 KLLK--DRSRFVRIDTANALSYLAELVGPY--GIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTR 440 (975)
T ss_pred HHhh--ccceeeeehhHhHHHHHHHhcCCc--chHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHH
Confidence 9998 888899998888888876543211 1123466777766655444333333444444433332 2333333456
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCCCCchHhHHHhhh--------------------
Q 002876 260 DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE-YGGDFSGDSDIPCFYFIKHAL-------------------- 318 (872)
Q Consensus 260 ~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l-------------------- 318 (872)
..+..+++.+.+++++.....+-+. ..|+..-..... +.++ + .+.|++++-
T Consensus 441 e~m~iv~ref~spdeemkk~~l~v~-~~C~~v~~~tp~~lr~~------v-~pefF~~fw~rr~A~dr~~~k~v~~ttvi 512 (975)
T COG5181 441 EHMEIVFREFKSPDEEMKKDLLVVE-RICDKVGTDTPWKLRDQ------V-SPEFFSPFWRRRSAGDRRSYKQVVLTTVI 512 (975)
T ss_pred HHHHHHHHHhCCchhhcchhHHHHH-HHHhccCCCCHHHHHHh------h-cHHhhchHHHhhhcccccccceeehhHHH
Confidence 7888888888888887665444332 333321000000 0000 0 001110000
Q ss_pred -------hhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCC-----cchhchHHHHHhhhcCcchhhhHH
Q 002876 319 -------PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD-----DIVPLVMPFVEENITKQEWRQREA 386 (872)
Q Consensus 319 -------~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~~~~~~~~~~~r~a 386 (872)
+.+..-+++.++ |+.+ ..|+.++.+..++...+|. .....+...+...+...+-.+ -.
T Consensus 513 lAk~~g~~~v~~kil~~~~------De~e---p~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~-~~ 582 (975)
T COG5181 513 LAKMGGDPRVSRKILEYYS------DEPE---PYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV-GL 582 (975)
T ss_pred HHHHcCChHHHHHHHhhcc------CCcc---hhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc-cE
Confidence 001111111111 1111 4466666666666555542 222222222222222111000 01
Q ss_pred HHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHh
Q 002876 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQS 466 (872)
Q Consensus 387 al~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 466 (872)
.+-+|+++.-.. .....++++.++..++..| +++.|.||..|+..++.++..+.. .-....+..+=..|.+.
T Consensus 583 il~~f~tv~vsl-~~r~kp~l~~ivStiL~~L-~~k~p~vR~~aadl~~sl~~vlk~------c~e~~~l~klg~iLyE~ 654 (975)
T COG5181 583 ILPCFSTVLVSL-EFRGKPHLSMIVSTILKLL-RSKPPDVRIRAADLMGSLAKVLKA------CGETKELAKLGNILYEN 654 (975)
T ss_pred EEecccceeeeh-hhccCcchHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHh------cchHHHHHHHhHHHHHh
Confidence 123444444333 2346788999999999999 999999999999999999887642 11234455555566677
Q ss_pred ccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHH
Q 002876 467 MKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPM 545 (872)
Q Consensus 467 l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~ 545 (872)
+.. .|+|-.....|+..+....+ -..+.|-+..|++.+..++.+. +.++....+..++.+....++...+
T Consensus 655 lge~ypEvLgsil~Ai~~I~sv~~-----~~~mqpPi~~ilP~ltPILrnk---h~Kv~~nti~lvg~I~~~~peyi~~- 725 (975)
T COG5181 655 LGEDYPEVLGSILKAICSIYSVHR-----FRSMQPPISGILPSLTPILRNK---HQKVVANTIALVGTICMNSPEYIGV- 725 (975)
T ss_pred cCcccHHHHHHHHHHHHHHhhhhc-----ccccCCchhhccccccHhhhhh---hHHHhhhHHHHHHHHHhcCcccCCH-
Confidence 764 57776666666666655432 4678888999999999999875 5778888899999999998875432
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchh
Q 002876 546 VMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAH 625 (872)
Q Consensus 546 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 625 (872)
.+.+...++.+.... .- -.++|..+.+.++.+....|++ .++..++..|..++...|
T Consensus 726 -rEWMRIcfeLvd~Lk-------s~---nKeiRR~A~~tfG~Is~aiGPq------------dvL~~LlnnLkvqeRq~R 782 (975)
T COG5181 726 -REWMRICFELVDSLK-------SW---NKEIRRNATETFGCISRAIGPQ------------DVLDILLNNLKVQERQQR 782 (975)
T ss_pred -HHHHHHHHHHHHHHH-------Hh---hHHHHHhhhhhhhhHHhhcCHH------------HHHHHHHhcchHHHHHhh
Confidence 223333222221111 00 1146667888888888888865 467777777777766677
Q ss_pred hHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCC
Q 002876 626 EEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQL 705 (872)
Q Consensus 626 ~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 705 (872)
...-.+++-++..+|.. .++|.++.....+ +..|.+..+..++.+.+..|+.-..|+-.+.|.+-..+.+.
T Consensus 783 vctsvaI~iVae~cgpf------sVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr-- 853 (975)
T COG5181 783 VCTSVAISIVAEYCGPF------SVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR-- 853 (975)
T ss_pred hhhhhhhhhhHhhcCch------hhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc--
Confidence 77777888888777753 3678887766644 55889999999999999999999999999999999999888
Q ss_pred CCCCchhHHHHHHHHHHHhcc-----chHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccC
Q 002876 706 HRSVKPPIFSCFGDIALAIGE-----NFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKG 780 (872)
Q Consensus 706 ~~~v~~~~~~~l~~i~~~~~~-----~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~ 780 (872)
+...|..+.+.+..++..... .+...++-+.|.+++ ....+..+..+++.++...++.
T Consensus 854 D~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle-----------------~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 854 DPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILE-----------------PSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred chHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccC-----------------CCcHHHHHHHHHHHHHHHHhcc
Confidence 777889999999999876532 233333333443331 1234445566666777666443
Q ss_pred CCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh-cCCccccccC
Q 002876 781 SPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTL-GSNAGPLIQQ 836 (872)
Q Consensus 781 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~-g~~~~~~~~~ 836 (872)
. .++.-+.+-+-. .+..||+. ..+..++.-++ .+...|+.+.
T Consensus 917 g-----------~~m~Yv~qGLFH--Ps~~VRk~-ywtvyn~myv~~~damvp~ypv 959 (975)
T COG5181 917 G-----------AMMKYVQQGLFH--PSSTVRKR-YWTVYNIMYVFDSDAMVPCYPV 959 (975)
T ss_pred H-----------HHHHHHHHhccC--chHHHHHH-HHHHHhhhhhcccccccccccC
Confidence 2 455666666664 35567666 44445555444 4556677664
No 26
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=4.7e-16 Score=171.83 Aligned_cols=588 Identities=14% Similarity=0.158 Sum_probs=373.9
Q ss_pred HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhH
Q 002876 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (872)
Q Consensus 172 ~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 251 (872)
...+...+...+. ++++..|.+++-.+-.++.++...-......+.|.......+.|+++=++..|.+.|+-+-+...
T Consensus 816 ~~~~~~~l~~~~~--s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd 893 (1702)
T KOG0915|consen 816 ETIILKLLDTLLT--SPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGD 893 (1702)
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCC
Confidence 4455555666666 79999999999999888887654333223345677777778888877777777777664333222
Q ss_pred HhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCCchH-hHH---Hh-hhhhHHHH
Q 002876 252 EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG--GDFSGDSDIPCF-YFI---KH-ALPVLVPL 324 (872)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~---~~-~l~~l~~~ 324 (872)
..+. ..++..++..+...... + ..+.+ ++++.++.. ..++|. .+.-+ +.. .. .-|.++--
T Consensus 894 ~~~k---~~LV~sL~~tl~~Gkr~----~----~~vs~-eTelFq~G~Lg~Tp~Gg-~isTYKELc~LASdl~qPdLVYK 960 (1702)
T KOG0915|consen 894 SSLK---KSLVDSLVNTLTGGKRK----A----IKVSE-ETELFQEGTLGKTPDGG-KISTYKELCNLASDLGQPDLVYK 960 (1702)
T ss_pred chhH---HHHHHHHHHHHhccccc----c----ceecc-chhcccCCcCCCCCCCC-cchHHHHHHHHHhhcCChHHHHH
Confidence 2111 23444444443321111 0 00110 111111100 011111 01100 000 00 00112221
Q ss_pred HHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcc---hhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCC
Q 002876 325 LLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDI---VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE 401 (872)
Q Consensus 325 l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~ 401 (872)
.++.-. -...|+-|+.|+-.++.++...|+.. ++.++|.+..+-.||+.+++.+.....+++.... +.
T Consensus 961 FM~LAn--------h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~-k~ 1031 (1702)
T KOG0915|consen 961 FMQLAN--------HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDS-KK 1031 (1702)
T ss_pred HHHHhh--------hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccCh-HH
Confidence 221111 13569999999999999998877655 4567888888888999999999999999998875 46
Q ss_pred cchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHH---H
Q 002876 402 KLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEK---A 477 (872)
Q Consensus 402 ~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~---a 477 (872)
....|+..++.-++..+ .+..|+||+++|.++..+...-+. ....+.++.+...+++.++| ...||.+ +
T Consensus 1032 ~vd~y~neIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~------~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~ 1104 (1702)
T KOG0915|consen 1032 VVDEYLNEILDELLVNL-TSKEWRVREASCLALADLLQGRPF------DQVKEKLPELWEAAFRVMDDIKESVREAADKA 1104 (1702)
T ss_pred HHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999 999999999999999999986432 12356677888888899887 5666554 5
Q ss_pred HHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHH
Q 002876 478 CGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMEL 557 (872)
Q Consensus 478 ~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 557 (872)
+.+++.+|-...+. ..+..-...+..++|.++.----.+ -+.+|..++..+..+++..|....|+++.+.|.+++..
T Consensus 1105 ~~~lsKl~vr~~d~-~~~~~~~~~l~~iLPfLl~~gims~--v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~ 1181 (1702)
T KOG0915|consen 1105 ARALSKLCVRICDV-TNGAKGKEALDIILPFLLDEGIMSK--VNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAY 1181 (1702)
T ss_pred HHHHHHHHhhhccc-CCcccHHHHHHHHHHHHhccCcccc--hHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHc
Confidence 66666666543321 1123333466777777765332222 56789999999999999999999999999999999876
Q ss_pred HHHHh-------hhcCChhHHHHHHHHHH------HHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcc-ccc
Q 002876 558 HQTLE-------AQKLSSDEREKQNEIQG------LLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR-SAT 623 (872)
Q Consensus 558 ~~~~~-------~~~~~~~~~~~~~~~~~------~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~ 623 (872)
...-. ... ...+.+.....|. ..++++..+++.+.. ..+.++.|.+.+.++.. .-.
T Consensus 1182 s~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~---------~vLeelip~l~el~R~sVgl~ 1251 (1702)
T KOG0915|consen 1182 SELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPMMETINKCINYIDI---------SVLEELIPRLTELVRGSVGLG 1251 (1702)
T ss_pred cccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH---------HHHHHHHHHHHHHHhccCCCC
Confidence 44211 000 0111222222222 123444444444322 24567888888888775 445
Q ss_pred hhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHccC
Q 002876 624 AHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALED-KILPYCDGIMTQLLKDLSS 702 (872)
Q Consensus 624 ~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~ 702 (872)
.|..+...+.-++..+|.++.||...++..++..+++. +..+++....++|.++....+ ++..++..++..+ +..
T Consensus 1252 Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dR-Nesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~---l~k 1327 (1702)
T KOG0915|consen 1252 TKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDR-NESVRKAFASAMGYLAKFSSPDQMQKLIETLLADL---LGK 1327 (1702)
T ss_pred cchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccc-cHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH---hcc
Confidence 67788888999999999999999999999999999975 458888888899999887643 4544444444443 222
Q ss_pred CCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 002876 703 NQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSP 782 (872)
Q Consensus 703 ~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 782 (872)
. ...+..++..+..|+....+-+..|...++|.+.-..... +.. ..+.+..++..+...
T Consensus 1328 ~---es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee----------~Ka-------~q~Lw~dvW~e~vsg- 1386 (1702)
T KOG0915|consen 1328 D---ESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE----------EKA-------NQELWNDVWAELVSG- 1386 (1702)
T ss_pred C---CCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH----------HHH-------HHHHHHHHHHHhCCC-
Confidence 2 2233455666666888888889999999999998665432 111 222244444444332
Q ss_pred cccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 002876 783 KTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSN 829 (872)
Q Consensus 783 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~ 829 (872)
+...++-|...++..+.....+ +..+.+|..+...+-.++......
T Consensus 1387 gagtvrl~~~eiLn~iceni~n-n~~w~lr~q~Akai~~~a~~~sss 1432 (1702)
T KOG0915|consen 1387 GAGTVRLYLLEILNLICENITN-NESWKLRKQAAKAIRVIAEGLSSS 1432 (1702)
T ss_pred CcchhhhhHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHccccccc
Confidence 3333555777777666555443 467899999998888877766433
No 27
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.81 E-value=2.2e-15 Score=177.62 Aligned_cols=708 Identities=13% Similarity=0.077 Sum_probs=430.0
Q ss_pred ChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHH------HHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcC
Q 002876 52 PVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKA------QIKSFILKTLSSPAHDARSTASQVVAKVAGIELP 125 (872)
Q Consensus 52 ~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~------~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~ 125 (872)
+++.|..|+.-|+.+.+.+ ++.+. ...+.|+..|.+++..++..++.++..+..++..
T Consensus 28 s~~~~~~Al~~Lr~Lak~~----------------~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~n 91 (2102)
T PLN03200 28 SPQEKELTTARLLELAKTR----------------EEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDL 91 (2102)
T ss_pred CHHHHHHHHHHHHHHHhcC----------------hHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHH
Confidence 4677777777777766543 22222 2356788889999999999999899888876421
Q ss_pred CC--CchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchh--hHHHHHHHHHhcccCCC-CCHHHHHHHHHHH
Q 002876 126 HK--QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD--HVNKILTAVVQGMNASE-SNNDVRLAATRAL 200 (872)
Q Consensus 126 ~~--~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~--~~~~i~~~l~~~l~~~~-~~~~vr~~al~~l 200 (872)
.. .-...++.|+..+++.++..|+.|..+|..+...-..+..... .....+|.++..+.+.+ .+..++..++.+|
T Consensus 92 k~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL 171 (2102)
T PLN03200 92 RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGAL 171 (2102)
T ss_pred HHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHH
Confidence 00 1156788889999988999999999999988764200211001 12455677777776311 1334666777888
Q ss_pred HHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHH-HHHHHHHHHHhc-CChhhHH
Q 002876 201 YNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVRE-DEEPVAL 278 (872)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~-~~~~v~~ 278 (872)
.++...-..... .......++.+..+++++++..+..++.++..++...++.....++ ..++.+...+.+ .+..++.
T Consensus 172 ~nLs~~~en~~~-~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE 250 (2102)
T PLN03200 172 RNLCGSTDGFWS-ATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA 250 (2102)
T ss_pred HHHhcCccchHH-HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence 877643221110 0011235677888888899999999999998888765543222222 567777788865 4558899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHH
Q 002876 279 QAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVAR 358 (872)
Q Consensus 279 ~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~ 358 (872)
.|.-++..++....+. ...+.. ..-+|.+++.+....++-...+..-..+..|..+|..++.
T Consensus 251 ~AA~AL~nLAs~s~e~----------------r~~Iv~--aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 251 EAAGALEALSSQSKEA----------------KQAIAD--AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHHHHHHhcCCHHH----------------HHHHHH--CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 9998888888532111 011111 1124555555442111100011112345555566655553
Q ss_pred HcCCcchhchHHHHHhhhcCc-chhhhHHHHHHHHHhhCCCCC-CcchHHH--HHHHHHHHHHhccCCcHH-HHHHHHHH
Q 002876 359 TVGDDIVPLVMPFVEENITKQ-EWRQREAATYAFGSILEGPSP-EKLVPLV--NIALNFMLTALMQDPNNH-VKDTTAWT 433 (872)
Q Consensus 359 ~~~~~~~~~l~~~l~~~~~~~-~~~~r~aal~~l~~l~~~~~~-~~~~~~~--~~i~~~l~~~l~~d~~~~-vr~~a~~~ 433 (872)
+. +.+++++.+.+.+. +....-.++.++..+...+.. ......+ ..+.+.+...+ .++++. ++..+..+
T Consensus 313 ---g~--~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Ll-r~k~p~~vqe~V~eA 386 (2102)
T PLN03200 313 ---GM--SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLL-KPRDTKLVQERIIEA 386 (2102)
T ss_pred ---Cc--hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHh-CCCCCchhHHHHHHH
Confidence 22 55777777766553 222223344455444222211 1111111 23557788888 777655 46677777
Q ss_pred HHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhH--HHHHHHHH
Q 002876 434 LGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALL 510 (872)
Q Consensus 434 l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l--~~i~~~l~ 510 (872)
+..+..+.... ... .-....+.|+..+.. +..++..++++|..++..- ......+ ...++.|+
T Consensus 387 Lasl~gN~~l~----~~L---~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-------~e~~~aIi~~ggIp~LV 452 (2102)
T PLN03200 387 LASLYGNAYLS----RKL---NHAEAKKVLVGLITMATADVQEELIRALSSLCCGK-------GGLWEALGGREGVQLLI 452 (2102)
T ss_pred HHHhcCChHHH----HHH---HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-------HHHHHHHHHcCcHHHHH
Confidence 65433321000 000 011455667777763 6899999999999998641 1111111 12467778
Q ss_pred HhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHH-HHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 002876 511 TVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMV-MQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVII 589 (872)
Q Consensus 511 ~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 589 (872)
..+.+. +..++..++++++.+............ ...+|.+++.+.. .+ . +++..++.+|..+.
T Consensus 453 ~LL~s~---s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s--------~~-~----~iqeeAawAL~NLa 516 (2102)
T PLN03200 453 SLLGLS---SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET--------GS-Q----KAKEDSATVLWNLC 516 (2102)
T ss_pred HHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--------CC-H----HHHHHHHHHHHHHh
Confidence 888765 467888899999988765543222222 3567788777743 11 1 34556788888775
Q ss_pred HHhCCCcchhhHhhHhH--HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHH
Q 002876 590 QKLGSSEQTKYVFMQYA--DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVC 667 (872)
Q Consensus 590 ~~l~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~ 667 (872)
.. +.. ....+ ...++.++++|++.+...++.+..+|.+++...... .++.+...+.. ++..++
T Consensus 517 ~~-~~q------ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-------~I~~Lv~LLls-dd~~~~ 581 (2102)
T PLN03200 517 CH-SED------IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-------TISQLTALLLG-DLPESK 581 (2102)
T ss_pred CC-cHH------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-------HHHHHHHHhcC-CChhHH
Confidence 41 111 22223 246777888999888889999999999997654332 22444555553 445788
Q ss_pred HHHHHHHHHHHHHHhcc--ccc--cHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHH-hHHHHHHHHHHH
Q 002876 668 AITVGVVGDLCRALEDK--ILP--YCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEK-YLMYAMPMLQSA 742 (872)
Q Consensus 668 ~~a~~~l~~l~~~~~~~--~~~--~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~-~l~~il~~l~~~ 742 (872)
..++..++.+....... ... -...-++.|.++++++ +..+++.+.++++.++....+.... .....+|++...
T Consensus 582 ~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L 659 (2102)
T PLN03200 582 VHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS--KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL 659 (2102)
T ss_pred HHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence 88888888886643321 100 0125688999999988 7889999999999998754432222 234568888888
Q ss_pred HhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 002876 743 AELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAP-HILQFLDSLYMEKDMDDVVTKTAIGVLGD 821 (872)
Q Consensus 743 l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~v~~~a~~~l~~ 821 (872)
++.. + ..+++.+..++..+...... .....++. ..++.+..++.+ .+.+++..++..++.
T Consensus 660 Lss~------~-------~~v~keAA~AL~nL~~~~~~----~q~~~~v~~GaV~pL~~LL~~--~d~~v~e~Al~ALan 720 (2102)
T PLN03200 660 LTNN------T-------EAVATQSARALAALSRSIKE----NRKVSYAAEDAIKPLIKLAKS--SSIEVAEQAVCALAN 720 (2102)
T ss_pred HhcC------C-------hHHHHHHHHHHHHHHhCCCH----HHHHHHHHcCCHHHHHHHHhC--CChHHHHHHHHHHHH
Confidence 8765 2 24677788888888764221 22222233 377888888875 588999999999999
Q ss_pred HHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 002876 822 LADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISKA 869 (872)
Q Consensus 822 i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (872)
++..- +.-...... +.++.+..-+ .+.+++.|+.|.|+...|.+.
T Consensus 721 Ll~~~-e~~~ei~~~-~~I~~Lv~lL-r~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 721 LLSDP-EVAAEALAE-DIILPLTRVL-REGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred HHcCc-hHHHHHHhc-CcHHHHHHHH-HhCChHHHHHHHHHHHHHHhC
Confidence 99864 333333323 2566666644 477899999999999888753
No 28
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.5e-15 Score=152.44 Aligned_cols=516 Identities=13% Similarity=0.148 Sum_probs=339.0
Q ss_pred CCChHHHHHHHHHHHHHHH-hhcCCCCchhHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHH
Q 002876 103 SPAHDARSTASQVVAKVAG-IELPHKQWPELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVV 180 (872)
Q Consensus 103 ~~~~~vr~~~a~~l~~i~~-~~~~~~~~~~l~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~ 180 (872)
|+...+|.....+...+.. |.. ..-..++|..-+.+.+. +...|.+.....+....+.. .. .+....++..++
T Consensus 28 d~~~~v~~~ml~a~~~~~~~~~~--~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~--~~-d~~~~~~~~~~~ 102 (569)
T KOG1242|consen 28 DRRIDVRGNMLEAGEAAINQHGD--QNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQ--IV-DPRPISIIEILL 102 (569)
T ss_pred CcchhhHHhHHHHHHHHHHhhhH--HHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcc--cc-CcchhHHHHHHH
Confidence 4456677655555444433 221 23345666666666543 55677777777777766541 11 334555666677
Q ss_pred hcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHh-hHhhHH
Q 002876 181 QGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK-LAPYIQ 259 (872)
Q Consensus 181 ~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~~ 259 (872)
..+. -++..+|.+...|+......... .....+++.+.+.+......-|..+...+..+++..+.. +.+ .
T Consensus 103 ~~~~--tps~~~q~~~~~~l~~~~~~~~~-----~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~--~ 173 (569)
T KOG1242|consen 103 EELD--TPSKSVQRAVSTCLPPLVVLSKG-----LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE--F 173 (569)
T ss_pred HhcC--CCcHHHHHHHHHHhhhHHHHhhc-----cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh--h
Confidence 7776 78999999999999886532221 112567777777777666677777777777777765421 111 2
Q ss_pred HHHHHHHHHHhcCChhhHH-HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCccc
Q 002876 260 DIFNITAKAVREDEEPVAL-QAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQ 338 (872)
Q Consensus 260 ~l~~~~~~~~~~~~~~v~~-~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 338 (872)
.++..+...+.+.....+. .++-.....+..- ....++|+..++|.++..+.+.
T Consensus 174 ~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L-------------------g~~~EPyiv~~lp~il~~~~d~------ 228 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKKSALNREAALLAFEAAQGNL-------------------GPPFEPYIVPILPSILTNFGDK------ 228 (569)
T ss_pred hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc-------------------CCCCCchHHhhHHHHHHHhhcc------
Confidence 4566666666665443322 2222222222110 0234677777888888776531
Q ss_pred CCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHh
Q 002876 339 DEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418 (872)
Q Consensus 339 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l 418 (872)
.-.+|.+|..+.+.+..+++..-++.++|-+...+.+..|+.+.+++..++.++... ++.+...+++++|.+...+
T Consensus 229 ---~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a-p~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 229 ---INKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA-PKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred ---chhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hHHHHHHHhHhhHHHHHHH
Confidence 137899999999999999877777777776666665568999999999999888765 5888888999999999999
Q ss_pred ccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHHHhcccCCCCCCCC
Q 002876 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPL 498 (872)
Q Consensus 419 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l 498 (872)
.|.++.||.++..++-++++... ..-+..++|.++.++.|...-...+...|+.-. + -...-
T Consensus 305 -~DT~~evr~a~~~~l~~~~svid----------N~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~tt--F-----V~~V~ 366 (569)
T KOG1242|consen 305 -WDTKPEVRKAGIETLLKFGSVID----------NPDIQKIIPTLLDALADPSCYTPECLDSLGATT--F-----VAEVD 366 (569)
T ss_pred -ccCCHHHHHHHHHHHHHHHHhhc----------cHHHHHHHHHHHHHhcCcccchHHHHHhhccee--e-----eeeec
Confidence 99999999999999999999874 233789999999999875422222322322110 0 01122
Q ss_pred chhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHH
Q 002876 499 TPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQ 578 (872)
Q Consensus 499 ~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 578 (872)
.|-+.-+++.+.+.+...+ ..++..+...++.++
T Consensus 367 ~psLalmvpiL~R~l~eRs---t~~kr~t~~IidNm~------------------------------------------- 400 (569)
T KOG1242|consen 367 APSLALMVPILKRGLAERS---TSIKRKTAIIIDNMC------------------------------------------- 400 (569)
T ss_pred chhHHHHHHHHHHHHhhcc---chhhhhHHHHHHHHH-------------------------------------------
Confidence 2455555555555554332 122222222222111
Q ss_pred HHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhh
Q 002876 579 GLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGL 658 (872)
Q Consensus 579 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 658 (872)
.-.... ..+.+|++.++|.+-..+.++.+++|.-+..+++.+.+..|.... +..+|.+...+
T Consensus 401 -----------~LveDp----~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~ 462 (569)
T KOG1242|consen 401 -----------KLVEDP----KDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETL 462 (569)
T ss_pred -----------HhhcCH----HHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhh
Confidence 111000 116788999999999999988889999999999999999986432 77888888877
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHH
Q 002876 659 QNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPM 738 (872)
Q Consensus 659 ~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~ 738 (872)
.......-+..+...++..+... -..+..++++.++........++.++....+.+.-+-...+..+.+|+.++++.
T Consensus 463 ~~~k~~~~~~g~aq~l~evl~~~---~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~ 539 (569)
T KOG1242|consen 463 TSEKSLVDRSGAAQDLSEVLAGL---GVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDE 539 (569)
T ss_pred ccchhhhhhHHHhhhHHHHHhcc---cchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHH
Confidence 65544344455555555555544 345667778887777766655666888888888888888999999999999999
Q ss_pred HHHHHhhc
Q 002876 739 LQSAAELS 746 (872)
Q Consensus 739 l~~~l~~~ 746 (872)
+++.+.+.
T Consensus 540 ~~k~~ad~ 547 (569)
T KOG1242|consen 540 FLKGLADN 547 (569)
T ss_pred HHHHhhhc
Confidence 99988754
No 29
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5.8e-12 Score=134.97 Aligned_cols=607 Identities=15% Similarity=0.202 Sum_probs=335.4
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCC--ChhHHHHHHHHHH-Hhhhhcccc-------ccchhhH
Q 002876 103 SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLG-YICEEVSSD-------AVEQDHV 172 (872)
Q Consensus 103 ~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~--~~~~r~~al~~l~-~i~~~~~~~-------~l~~~~~ 172 (872)
++++..|+.|-+-|..+- +-|.++..+++.+.++ +..+|.+|..-+. .|.+.+++. .+....-
T Consensus 15 d~d~~~R~~AE~~L~q~~-------K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk 87 (1010)
T KOG1991|consen 15 DSDAKERKAAEQQLNQLE-------KQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDK 87 (1010)
T ss_pred CCChHHHHHHHHHHHHhh-------cCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHH
Confidence 456899998888775543 4567888888877665 3356777666555 566666322 1222333
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhH-
Q 002876 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY- 251 (872)
Q Consensus 173 ~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~- 251 (872)
..+...++..+- ..+.-+|..--.|+..++.. .+ ...|+.+++.+..++++++....-.++-||..+++.+.
T Consensus 88 ~~irenIl~~iv--~~p~~iRvql~~~l~~Ii~~---D~--p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~ 160 (1010)
T KOG1991|consen 88 AVIRENILETIV--QVPELIRVQLTACLNTIIKA---DY--PEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW 160 (1010)
T ss_pred HHHHHHHHHHHH--hCchHHHHHHHHHHHHHHhc---CC--cccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 344444444444 33556676666677776531 11 14568899999999998988888899999999999875
Q ss_pred ----------HhhHhhHHHHHHHHHHHHhcCChh---hHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhh
Q 002876 252 ----------EKLAPYIQDIFNITAKAVREDEEP---VALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL 318 (872)
Q Consensus 252 ----------~~~~~~~~~l~~~~~~~~~~~~~~---v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (872)
..+..+++.+++...+.+..++.+ .....+..+.+++-.+ +|..-.....+
T Consensus 161 k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~----------------LP~~L~~~~~f 224 (1010)
T KOG1991|consen 161 KKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYE----------------LPLELSAPETF 224 (1010)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHh----------------CCHHhhCchhH
Confidence 123334455555555555555443 2333343333333221 11111111222
Q ss_pred hhHHHHHHHHHhcc------cCCccc--CCccchHhHHHHHHHHHHHHHcCCcch-----------------h-------
Q 002876 319 PVLVPLLLETLLKQ------EEDQDQ--DEGAWNIAMAGGTCLGLVARTVGDDIV-----------------P------- 366 (872)
Q Consensus 319 ~~l~~~l~~~l~~~------~~d~~~--~~~~~~~r~~a~~~l~~l~~~~~~~~~-----------------~------- 366 (872)
...+...+..+.+. ..|+++ ...-|.+++.|...+.++.+.+|+... +
T Consensus 225 ~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~l 304 (1010)
T KOG1991|consen 225 TSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFL 304 (1010)
T ss_pred HHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 22333333332221 011111 113456777777777776666543210 0
Q ss_pred ------------------chHHHHHhhh---------------------------c---------Ccch-----------
Q 002876 367 ------------------LVMPFVEENI---------------------------T---------KQEW----------- 381 (872)
Q Consensus 367 ------------------~l~~~l~~~~---------------------------~---------~~~~----------- 381 (872)
.++.++.+.. + |+.-
T Consensus 305 k~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed 384 (1010)
T KOG1991|consen 305 KILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFED 384 (1010)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcc
Confidence 0111111100 0 1111
Q ss_pred --hhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHh---ccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccch
Q 002876 382 --RQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL---MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC 456 (872)
Q Consensus 382 --~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l---~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 456 (872)
.-+-||..++..++..-+++.+.+.++-++..+.+.- ....+++-+..|+.++|.+++.+... ..+...+-
T Consensus 385 ~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~----s~~~~~mE 460 (1010)
T KOG1991|consen 385 GYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK----SPYKSQME 460 (1010)
T ss_pred cCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC----CchHHHHH
Confidence 1134555555555554433334333333333333222 02346888899999999999876532 11223333
Q ss_pred HHHHHHHHHhccCC-hhHHHHHHHHHHHHH-HhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHH
Q 002876 457 QQIISVLLQSMKDV-PNVAEKACGALYFLA-QGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534 (872)
Q Consensus 457 ~~il~~l~~~l~d~-~~v~~~a~~al~~l~-~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l 534 (872)
.-+++.++..++++ ...|.+|||.++.++ ..+++ ...+..+++...+++.+.+ +--||..+.-|+..+
T Consensus 461 ~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d--------~~~l~~ale~t~~~l~~d~--~lPV~VeAalALq~f 530 (1010)
T KOG1991|consen 461 YFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD--------PNNLSEALELTHNCLLNDN--ELPVRVEAALALQSF 530 (1010)
T ss_pred HHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC--------hHHHHHHHHHHHHHhccCC--cCchhhHHHHHHHHH
Confidence 44556666667664 689999999999998 44432 2356677888888887433 455888899999999
Q ss_pred HHccccC---cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHH
Q 002876 535 VRCSTDE---TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMG 611 (872)
Q Consensus 535 ~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~ 611 (872)
+...... +.+++++++..++...++. +.+ .+..++..++..++.. +.|++..+++
T Consensus 531 I~~~~~~~e~~~~hvp~~mq~lL~L~ne~---------End-------~Lt~vme~iV~~fseE------lsPfA~eL~q 588 (1010)
T KOG1991|consen 531 ISNQEQADEKVSAHVPPIMQELLKLSNEV---------END-------DLTNVMEKIVCKFSEE------LSPFAVELCQ 588 (1010)
T ss_pred HhcchhhhhhHhhhhhHHHHHHHHHHHhc---------chh-------HHHHHHHHHHHHHHHh------hchhHHHHHH
Confidence 9988742 5555555555555554332 111 2567888888888876 8888776666
Q ss_pred HH----HHHHhc---cccchhhHHHHHHHHH------HHHhhh--hhHhhh-HHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002876 612 LF----LRVFAI---RSATAHEEAMLAIGAL------AYATGQ--DFLKYM-PEFYKYVEMGLQNFEDYQVCAITVGVVG 675 (872)
Q Consensus 612 ~l----~~~l~~---~~~~~~~~a~~~l~~l------~~~~~~--~~~~~~-~~i~~~l~~~l~~~~~~~v~~~a~~~l~ 675 (872)
.+ .+++++ .+....+.++.|+|-+ ..++.. ....++ +.++|.+...+++.
T Consensus 589 ~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-------------- 654 (1010)
T KOG1991|consen 589 NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKND-------------- 654 (1010)
T ss_pred HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 55 455554 2333445555554433 222221 122222 22334333333321
Q ss_pred HHHHHHhccccccHHHHHHHHHHHccCCCC-CCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCc
Q 002876 676 DLCRALEDKILPYCDGIMTQLLKDLSSNQL-HRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDD 754 (872)
Q Consensus 676 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~ 754 (872)
..++.+.++.+..+... .+++.+.....+.-+.....+.-..|++.++|.+-+.+.-..
T Consensus 655 -------------i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~------- 714 (1010)
T KOG1991|consen 655 -------------ITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGT------- 714 (1010)
T ss_pred -------------hHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCc-------
Confidence 11222222222221110 223444445555555555555556777777777765443221
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccc
Q 002876 755 DMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLI 834 (872)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~ 834 (872)
..+. .-..|...++..+.+.+.+....++-...|..++..++..+++...+|+
T Consensus 715 -----------------~~~~----------s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~i 767 (1010)
T KOG1991|consen 715 -----------------PSLL----------SNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYI 767 (1010)
T ss_pred -----------------hhhh----------ccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHh
Confidence 0111 1124788888999888887666777788899999999999988555554
Q ss_pred cC
Q 002876 835 QQ 836 (872)
Q Consensus 835 ~~ 836 (872)
+.
T Consensus 768 pl 769 (1010)
T KOG1991|consen 768 PL 769 (1010)
T ss_pred HH
Confidence 44
No 30
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=5.4e-15 Score=151.14 Aligned_cols=488 Identities=16% Similarity=0.164 Sum_probs=339.1
Q ss_pred HHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhhcCCC-CchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcccc
Q 002876 88 SVKAQIKSFILKTLSSP-AHDARSTASQVVAKVAGIELPHK-QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSD 165 (872)
Q Consensus 88 ~~~~~i~~~ll~~l~~~-~~~vr~~~a~~l~~i~~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~ 165 (872)
+.-..+++..-+.|++. +..+|+.-....+..+.|....+ .-..++..+++.+..+++.++++...|+........
T Consensus 51 ~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~-- 128 (569)
T KOG1242|consen 51 QNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSK-- 128 (569)
T ss_pred HHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhh--
Confidence 33445666666667765 57788888888888888764321 334677888888889999999999999976654431
Q ss_pred ccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHH-HHHHHHH
Q 002876 166 AVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ-AAFECLV 244 (872)
Q Consensus 166 ~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~-~~~~~l~ 244 (872)
......+.+.+.+.+. ..+..-|..+...+..++.- ..........++..+...+++.....++ .++.++.
T Consensus 129 ---~~~~~~~l~~l~~ll~--~~~~~~~~~aa~~~ag~v~g---~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~ 200 (569)
T KOG1242|consen 129 ---GLSGEYVLELLLELLT--STKIAERAGAAYGLAGLVNG---LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFE 200 (569)
T ss_pred ---ccCHHHHHHHHHHHhc--cccHHHHhhhhHHHHHHHcC---cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHH
Confidence 1234445555555555 45666777777666665432 1111112246888888888877666555 4667777
Q ss_pred HHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHH
Q 002876 245 AISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPL 324 (872)
Q Consensus 245 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 324 (872)
......+..++||+..+++.++..+.|...++|..|.+....+...- ....+..++|.
T Consensus 201 ~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~----------------------~~~aVK~llps 258 (569)
T KOG1242|consen 201 AAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL----------------------SAYAVKLLLPS 258 (569)
T ss_pred HHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc----------------------CcchhhHhhhh
Confidence 77777778889999999999999999999999999998877766532 11222334444
Q ss_pred HHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCC---cchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCC
Q 002876 325 LLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE 401 (872)
Q Consensus 325 l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~ 401 (872)
++..+. +..|..+.++.+.++.++.+.+. ...|.++|-+.+-+.|....+|+++..++..+++...
T Consensus 259 ll~~l~---------~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid-- 327 (569)
T KOG1242|consen 259 LLGSLL---------EAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID-- 327 (569)
T ss_pred hHHHHH---------HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc--
Confidence 444332 12599999999999999887764 4578999999999999999999999998888877653
Q ss_pred cchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHH
Q 002876 402 KLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGA 480 (872)
Q Consensus 402 ~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~a 480 (872)
.+.+..++|.++.++ .|++..+....- .+++-. +. ......-+.-++|.+-+++.+ +...+..++..
T Consensus 328 --N~dI~~~ip~Lld~l-~dp~~~~~e~~~-~L~~tt--FV------~~V~~psLalmvpiL~R~l~eRst~~kr~t~~I 395 (569)
T KOG1242|consen 328 --NPDIQKIIPTLLDAL-ADPSCYTPECLD-SLGATT--FV------AEVDAPSLALMVPILKRGLAERSTSIKRKTAII 395 (569)
T ss_pred --cHHHHHHHHHHHHHh-cCcccchHHHHH-hhccee--ee------eeecchhHHHHHHHHHHHHhhccchhhhhHHHH
Confidence 233677788899999 888866665432 222111 11 112346778899999999986 56667778888
Q ss_pred HHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHH
Q 002876 481 LYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQT 560 (872)
Q Consensus 481 l~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 560 (872)
+.+++...++ +..+.||++.+++.+-..+.+. .|.+|..+..+++.+.+..|.... +...|.+.+.....
T Consensus 396 idNm~~LveD----p~~lapfl~~Llp~lk~~~~d~---~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 396 IDNMCKLVED----PKDLAPFLPSLLPGLKENLDDA---VPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSE 465 (569)
T ss_pred HHHHHHhhcC----HHHHhhhHHHHhhHHHHHhcCC---ChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccc
Confidence 9999887754 6889999999999999998876 588999999999999999986432 44455555544321
Q ss_pred HhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHHHH
Q 002876 561 LEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR--SATAHEEAMLAIGALAYA 638 (872)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~~~~a~~~l~~l~~~ 638 (872)
. .+ ..+......+..+...++. .+...+++.+....... ++.+++..+..+.-+-..
T Consensus 466 k-------~~-----~~~~g~aq~l~evl~~~~v---------~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~ 524 (569)
T KOG1242|consen 466 K-------SL-----VDRSGAAQDLSEVLAGLGV---------EKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYI 524 (569)
T ss_pred h-------hh-----hhhHHHhhhHHHHHhcccc---------hHHHHHHHHHHHHHhhccchhhhccCeeehhhccchh
Confidence 1 01 1122234445555544443 24555666665555544 344777877788888888
Q ss_pred hhhhhHhhhHHHHHHHHhhhcCC
Q 002876 639 TGQDFLKYMPEFYKYVEMGLQNF 661 (872)
Q Consensus 639 ~~~~~~~~~~~i~~~l~~~l~~~ 661 (872)
.+..+.+|+..+++.+.+.+.+.
T Consensus 525 ~~~~~~~yi~~i~~~~~k~~ad~ 547 (569)
T KOG1242|consen 525 FGFQFQPYIHEILDEFLKGLADN 547 (569)
T ss_pred hhHHhHHHHHHHHHHHHHHhhhc
Confidence 89999999999999999988754
No 31
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=7.1e-14 Score=140.75 Aligned_cols=474 Identities=15% Similarity=0.189 Sum_probs=295.7
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHh
Q 002876 21 KQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKT 100 (872)
Q Consensus 21 ~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~ 100 (872)
.+|..+|++|+++ ...|..+-+++.. ..+.....+|++.+++++. ..+..+|+.....+|+.++..
T Consensus 2 ~~A~~~L~~FQ~S--~~aW~i~~eiL~~-~~~~~~~~FaaqTlr~Ki~-----------~~F~~Lp~~~~~slrdsl~th 67 (559)
T KOG2081|consen 2 EKANNWLGNFQKS--NDAWQICEEILSQ-KCDVEALLFAAQTLRNKIQ-----------YDFSELPPLTHASLRDSLITH 67 (559)
T ss_pred chHhHHHHHhCCC--hHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHH-----------hhHHhcCcchhHHHHHHHHHH
Confidence 5789999999999 8888888888766 4788999999999999987 456778998888888877666
Q ss_pred cC---CCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcccccc----------
Q 002876 101 LS---SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV---------- 167 (872)
Q Consensus 101 l~---~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l---------- 167 (872)
+. +..+.+|.+++-+++.++-+. | .|.+-++.++....+..+. .-.-+.+|..+-++..+-..
T Consensus 68 l~~l~~~~~~i~tQL~vavA~Lal~~-~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~ 143 (559)
T KOG2081|consen 68 LKELHDHPDVIRTQLAVAVAALALHM-P--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEF 143 (559)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHh-H--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHH
Confidence 54 344599999999999999987 4 7988777777766655444 34456667666555421000
Q ss_pred c---hhhHHHHHHHHHhcccCCCCC-HHHHHHHHHHHHHhHhh--ch-hhccChhhHHHHHHHHHHhhc-----------
Q 002876 168 E---QDHVNKILTAVVQGMNASESN-NDVRLAATRALYNALGF--AQ-ANFSNDMERDYIMRVVCEATL----------- 229 (872)
Q Consensus 168 ~---~~~~~~i~~~l~~~l~~~~~~-~~vr~~al~~l~~~~~~--~~-~~~~~~~~~~~il~~l~~~~~----------- 229 (872)
. ......++..+...++..|.+ .++-..+++|++++... ++ +.+. ....++..++..++
T Consensus 144 ~~~l~~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~---a~~pLi~l~F~sl~~~~lhe~At~c 220 (559)
T KOG2081|consen 144 IDELAAQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVL---ASFPLITLAFRSLSDDELHEEATEC 220 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHH---hhhHHHHHHHHHcccchhhHHHHHH
Confidence 0 134455555666666544444 67778889999887651 11 1111 00123333333332
Q ss_pred -------------------------------------CCCHHHHHHHHHHHHHHHHHhHHhhHhh---HHHHHHHHHHHH
Q 002876 230 -------------------------------------SPEVKIRQAAFECLVAISSTYYEKLAPY---IQDIFNITAKAV 269 (872)
Q Consensus 230 -------------------------------------~~~~~~r~~~~~~l~~l~~~~~~~~~~~---~~~l~~~~~~~~ 269 (872)
..+.+.+.+.++.+..+.+.+...+... .-.++..++-..
T Consensus 221 ic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~ 300 (559)
T KOG2081|consen 221 ICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVA 300 (559)
T ss_pred HHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhc
Confidence 2223333333334433333332211111 111222222233
Q ss_pred hcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCC---cccCCccchHh
Q 002876 270 REDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEED---QDQDEGAWNIA 346 (872)
Q Consensus 270 ~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d---~~~~~~~~~~r 346 (872)
...+.++....+.+|..+.+.-....+. .....+++|...++..+........+. .+++++....|
T Consensus 301 ~h~~~evie~SF~fW~~lse~l~~~~~~-----------~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR 369 (559)
T KOG2081|consen 301 GHNDTEVIEASFNFWYSLSEELTLTDDD-----------EALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFR 369 (559)
T ss_pred cCCchhhhhhhHHhhhhhHHHHhccccH-----------HHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHH
Confidence 3455577788888888887643211100 123456888888999998887654421 12333445678
Q ss_pred HHHHHHHHHHHHHcCCc-chhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHH
Q 002876 347 MAGGTCLGLVARTVGDD-IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNH 425 (872)
Q Consensus 347 ~~a~~~l~~l~~~~~~~-~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~ 425 (872)
....+.+..++...|.. .+..+...+.+ +...|..-+|++..+..++.+.. ..-.+.++.++..+.+.- ....
T Consensus 370 ~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~-~~e~~i~pevl~~i~nlp---~Q~~ 443 (559)
T KOG2081|consen 370 LKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVS-PEENTIMPEVLKLICNLP---EQAP 443 (559)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCC-ccccchHHHHHHHHhCCc---cchh
Confidence 88888888888887653 33333333333 34669999999999999999875 334455677776665532 3444
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHH
Q 002876 426 VKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEI 505 (872)
Q Consensus 426 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i 505 (872)
+|++++..+|.+.+|.. .++..+..++..+..++.... ....+..++..++..+... ...+.|++..+
T Consensus 444 ~~~ts~ll~g~~~ew~~--------~~p~~le~v~~~~~~~~~~~~-~as~~a~~~~~i~~~c~~~---~~~l~~~~~~l 511 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVE--------QHPELLEPVLRYIRQGLQLKR-LASAAALAFHRICSACRVQ---MTCLIPSLLEL 511 (559)
T ss_pred HHHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHH---hhhhhHHHHHH
Confidence 99999999999999985 467788888888888887644 6666777777777776542 34444555555
Q ss_pred HHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccC-cHHHHHHHH
Q 002876 506 VQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQLV 550 (872)
Q Consensus 506 ~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~~~~l~ 550 (872)
+..+.....+. .... .+..+..++...|.. .+..+.++.
T Consensus 512 ~~~l~~~~~~~-----e~a~-l~~~~s~i~~~lp~~k~~~~~~el~ 551 (559)
T KOG2081|consen 512 IRSLDSTQINE-----EAAC-LLQGISLIISNLPAHKAKIALEELC 551 (559)
T ss_pred HHHHHHHhccH-----HHHH-HHHHHHHHHhcCCHhhhhHHHHHHh
Confidence 55544444331 2222 666777777777642 333334333
No 32
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.7e-10 Score=126.47 Aligned_cols=732 Identities=15% Similarity=0.132 Sum_probs=388.8
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 002876 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQV 115 (872)
Q Consensus 36 ~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~ 115 (872)
+++...|...+..++.+..+++.+.-.|...+.+.. -..|. ....++.+. .++....|..+++|..+.++
T Consensus 92 s~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd-------~~aW~--~~~t~~~~~-~il~~~~h~~pkvRk~a~~~ 161 (1176)
T KOG1248|consen 92 SDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQD-------ASAWS--YSSTKTELF-GILAFAAHKKPKVRKAAQRG 161 (1176)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcc-------hhhhc--cccHHHHHH-HHHHHHhcCchHHHHHHHHH
Confidence 456666666676556688899999888888776532 35787 444555444 45556667888999998888
Q ss_pred HHHHHHhh--cCCC----------------------------------------Cch-hHHHHH----HHhhcCCChhHH
Q 002876 116 VAKVAGIE--LPHK----------------------------------------QWP-ELIGAL----LSNIHQLPPHTK 148 (872)
Q Consensus 116 l~~i~~~~--~~~~----------------------------------------~~~-~l~~~l----~~~l~~~~~~~r 148 (872)
+..+...- .|.. .|| .++..+ +......+..++
T Consensus 162 i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~ 241 (1176)
T KOG1248|consen 162 IAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVL 241 (1176)
T ss_pred HHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHH
Confidence 87776510 0000 133 122222 222233344556
Q ss_pred HHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccCh--hhHHHHHHHHHH
Q 002876 149 QATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSND--MERDYIMRVVCE 226 (872)
Q Consensus 149 ~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~--~~~~~il~~l~~ 226 (872)
-.+++|+..++..- +..+.......++..+.+.-- +..+..+-.+-++++......+...-... ...+.++.+.+.
T Consensus 242 ~~~~q~l~~lf~~~-~~~l~a~~~a~lL~al~~l~p-s~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t 319 (1176)
T KOG1248|consen 242 LEVLQCLHSLFKKH-PTALAAELNARLLTALMTLSP-SENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFT 319 (1176)
T ss_pred HHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHHhCC-CccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHH
Confidence 66677777666655 444433444455555544322 13344444555555554332221110000 112455666666
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHH-HHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 002876 227 ATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITA-KAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGD 305 (872)
Q Consensus 227 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 305 (872)
+..++.+++...+..++..+.+.... +.+.+....+ ..+.-....+-..++.++..+.+.-
T Consensus 320 ~~~s~~~e~~q~a~q~l~~il~~sv~----~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~-------------- 381 (1176)
T KOG1248|consen 320 ILESLIEELVQAASQSLKEILKESVT----VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKC-------------- 381 (1176)
T ss_pred HHhcccHHHHHHHHHHHHHHhcccCc----ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHh--------------
Confidence 66677788888888888888776554 2222333211 1112122223333444444444321
Q ss_pred CCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcC----cch
Q 002876 306 SDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITK----QEW 381 (872)
Q Consensus 306 ~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~----~~~ 381 (872)
.....+++...+..+.. ...++| ...+.....|++.-...+|...+=.++|+=. ...+ ..|
T Consensus 382 -----G~~s~~~l~~~L~~l~~----lr~~~d-----~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl-~~~s~~~~RsW 446 (1176)
T KOG1248|consen 382 -----GELSGPELTKTLEGLCD----LRASPD-----FFHKLQLDQCIGSAVRAMGPERVLTILPLNL-HAESLSFTRSW 446 (1176)
T ss_pred -----hhhcCHHHHHHHHHHHH----hhcCCC-----CccHHHHHHHHHHHHHhhCHHHHHHHcchhc-cccccccchhH
Confidence 11112222222222221 111111 1223345567777667777554434444322 1111 113
Q ss_pred hhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhc-----cCC--cHHHHHHHHH-HHHHhhhhccCCCCCCcccCc
Q 002876 382 RQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALM-----QDP--NNHVKDTTAW-TLGRMFEFLHGSTLETPIINQ 453 (872)
Q Consensus 382 ~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~-----~d~--~~~vr~~a~~-~l~~l~~~~~~~~~~~~~~~~ 453 (872)
- +-.|..-+.+.. +.-+...++|...+... .++ ...+-.+..+ ..+-+-.++.. |....
T Consensus 447 L-----LPvLR~~i~~A~---La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~-----P~Dl~ 513 (1176)
T KOG1248|consen 447 L-----LPVLRDYIIGAS---LAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNY-----PVDLA 513 (1176)
T ss_pred h-----HHHHHHhhccCc---HHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCC-----CccHH
Confidence 2 222333232322 22233334444333210 111 1212233322 22222222211 33445
Q ss_pred cchHHHHHHHHHhccCChhHHHHHHHHHHHHHHhccc---CCCCCCCCchhHHHHHHHHHHhhccCCch---hhhhHHHH
Q 002876 454 GNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFED---AISPSSPLTPFFQEIVQALLTVTHREDAG---ESRLRTAA 527 (872)
Q Consensus 454 ~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~---~~~~~~~l~~~l~~i~~~l~~~l~~~~~~---~~~v~~~~ 527 (872)
.-+..+.+.+...+..++..|...|.+|..+++...+ .......+..+..++++.+.......... ....+...
T Consensus 514 ~sF~~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~ 593 (1176)
T KOG1248|consen 514 ESFTDLAPILGAALLKRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTV 593 (1176)
T ss_pred HHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHH
Confidence 5578888999999988889999999999999987421 11224556677788888888877554321 12233333
Q ss_pred HHHHH-HHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhH
Q 002876 528 YETLN-EVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYA 606 (872)
Q Consensus 528 ~~~l~-~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 606 (872)
++.+. ..+...+.+ +...+.+.+.+... +.++.. ........+..+..++...... .+
T Consensus 594 L~~i~~~~~~~t~~d-------v~~~l~~s~~e~as----~~~~s~-~~~~~~slLdl~~~~a~~~~e~---------~v 652 (1176)
T KOG1248|consen 594 LEIIRVDYFTVTPTD-------VVGSLKDSAGELAS----DLDESV-ASFKTLSLLDLLIALAPVQTES---------QV 652 (1176)
T ss_pred HHHHHHHHhhcccHH-------HHHHHHHHHHhHhc----cchhhh-hhHHHHHHHHHHHhhhccccch---------hH
Confidence 33333 333333322 22222222222211 111110 0011112333333333222211 22
Q ss_pred HHHHHHHHHHH-hccccchhhHHHHHHHHHHHH--hhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhc
Q 002876 607 DQMMGLFLRVF-AIRSATAHEEAMLAIGALAYA--TGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALED 683 (872)
Q Consensus 607 ~~i~~~l~~~l-~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 683 (872)
..++ .+.... ++.+..++..++..|..+... ........++.+...+...++.... ..+...+.++..+.+..+.
T Consensus 653 s~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~-~~~~~rl~~L~~L~~~~~~ 730 (1176)
T KOG1248|consen 653 SKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSS-PAQASRLKCLKRLLKLLSA 730 (1176)
T ss_pred HHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHhccH
Confidence 2222 223333 334667899999999998876 1122335566777777777776544 6788999999999998886
Q ss_pred cccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHH--HHh---ccch-HHhHHHHHHHHHHHHhhccCCCCCCccHH
Q 002876 684 KILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA--LAI---GENF-EKYLMYAMPMLQSAAELSVHTSGVDDDMT 757 (872)
Q Consensus 684 ~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~--~~~---~~~~-~~~l~~il~~l~~~l~~~~~~~~~d~~~~ 757 (872)
+...+++..++.++=.+... +...|.+++.||-.|+ ... |++= ..-++.+++.|...+-..
T Consensus 731 e~~~~i~k~I~EvIL~~Ke~--n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd----------- 797 (1176)
T KOG1248|consen 731 EHCDLIPKLIPEVILSLKEV--NVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGD----------- 797 (1176)
T ss_pred HHHHHHHHHHHHHHHhcccc--cHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhccc-----------
Confidence 67677777777766666443 6677888888887777 322 2221 235666666666654322
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCcc-ccccC
Q 002876 758 EYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAG-PLIQQ 836 (872)
Q Consensus 758 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~-~~~~~ 836 (872)
. ..++...+-++..++...+.. . =.+++..+++.+...+.. .+++++..|++++..++..+++... ++++.
T Consensus 798 ~--~~~~as~Ivai~~il~e~~~~-l---d~~~l~~li~~V~~~L~s--~sreI~kaAI~fikvlv~~~pe~~l~~~~~~ 869 (1176)
T KOG1248|consen 798 S--TRVVASDIVAITHILQEFKNI-L---DDETLEKLISMVCLYLAS--NSREIAKAAIGFIKVLVYKFPEECLSPHLEE 869 (1176)
T ss_pred H--HHHHHHHHHHHHHHHHHHhcc-c---cHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHcCCHHHHhhhHHH
Confidence 1 122222255566666654332 1 125778888888877774 6899999999999999999987744 55554
Q ss_pred chHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhcC
Q 002876 837 SVSSKDFLNECLSSDDHMIKESAEWAKLAISKAISF 872 (872)
Q Consensus 837 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (872)
+++. +.+..++..-.+|..+.+....+.|-+|+
T Consensus 870 --LL~s-ll~ls~d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 870 --LLPS-LLALSHDHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred --HHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHhCH
Confidence 3444 44466677788888888888888887774
No 33
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=4.1e-13 Score=134.11 Aligned_cols=404 Identities=15% Similarity=0.188 Sum_probs=282.1
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhH---HHHHH-HHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhh
Q 002876 179 VVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMER---DYIMR-VVCEATLSPEVKIRQAAFECLVAISSTYYEKL 254 (872)
Q Consensus 179 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~---~~il~-~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 254 (872)
+..++. |...+-|++|.--+-..+. +.+. .++. +.+++ ..-+...+++..-|+.++-.+....-..+..-
T Consensus 5 i~r~lt--dKlYekRKaaalelEk~Vk---~l~~-~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~ 78 (675)
T KOG0212|consen 5 IARGLT--DKLYEKRKAAALELEKLVK---DLVN-NNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKD 78 (675)
T ss_pred hhhhhh--hHHHHHHHHHHHHHHHHHH---HHHc-cCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhcccc
Confidence 344555 6667778777766666553 1111 1111 33444 33345566666667777777766655444444
Q ss_pred HhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccC
Q 002876 255 APYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE 334 (872)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 334 (872)
.+|++.+++.++..+.|.+..+|..|+|.+..+++... .-+..+++.++..+++.....+
T Consensus 79 ~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k-------------------~~v~~~Fn~iFdvL~klsaDsd- 138 (675)
T KOG0212|consen 79 AGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAK-------------------GEVLVYFNEIFDVLCKLSADSD- 138 (675)
T ss_pred HHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhc-------------------cCcccchHHHHHHHHHHhcCCc-
Confidence 56899999999999999999999999999999887431 1234556667777776554211
Q ss_pred CcccCCccchHhHHHHHHHHHHHHHc--C---CcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHH
Q 002876 335 DQDQDEGAWNIAMAGGTCLGLVARTV--G---DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNI 409 (872)
Q Consensus 335 d~~~~~~~~~~r~~a~~~l~~l~~~~--~---~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~ 409 (872)
-++| .+++.++++.+.. . .-.++.++|.+.+.+...++..|...+..+..+-... +-.+-.|++.
T Consensus 139 --------~~V~-~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~~~m~~yl~~ 208 (675)
T KOG0212|consen 139 --------QNVR-GGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-DLEMISYLPS 208 (675)
T ss_pred --------cccc-cHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-cHHHHhcchH
Confidence 2444 3568888887743 1 2347889999999999989999999998888776655 4667889999
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhc
Q 002876 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGF 488 (872)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
+++.++..+ +|+++.||..+-.+++.+...+.++ |.. -..+.+++.++..++. ++.++..|...+..|+...
T Consensus 209 ~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~eI~s~----P~s--~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~ 281 (675)
T KOG0212|consen 209 LLDGLFNML-SDSSDEVRTLTDTLLSEFLAEIRSS----PSS--MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP 281 (675)
T ss_pred HHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHhcC----ccc--cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC
Confidence 999999999 9999999999999999888877532 111 1345778888888886 6889999988888887754
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcH---HHHHHHHHHHHHHHHHHHhhhc
Q 002876 489 EDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETA---PMVMQLVPLIMMELHQTLEAQK 565 (872)
Q Consensus 489 ~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~---~~~~~l~~~l~~~l~~~~~~~~ 565 (872)
+..+.+|+..++..++.++.+.+. ..++..+...-+.+...++.... --+..++..+...+.
T Consensus 282 ------g~~~l~~~s~il~~iLpc~s~~e~--~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~------- 346 (675)
T KOG0212|consen 282 ------GRDLLLYLSGILTAILPCLSDTEE--MSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLS------- 346 (675)
T ss_pred ------CcchhhhhhhhhhhcccCCCCCcc--ccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhh-------
Confidence 678999999999999999987652 23444443333334443332111 112344444444442
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhh-hhH
Q 002876 566 LSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQ-DFL 644 (872)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~ 644 (872)
++++ +.+..+++.+..+..+.+.. +..+.+++++.++..|.+++..+-..++..++.++..-.. ...
T Consensus 347 ---~~~~---~tri~~L~Wi~~l~~~~p~q------l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~ 414 (675)
T KOG0212|consen 347 ---DDRE---ETRIAVLNWIILLYHKAPGQ------LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLR 414 (675)
T ss_pred ---cchH---HHHHHHHHHHHHHHhhCcch------hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHH
Confidence 3333 45667899999999998877 8889999999999999999999999999999999876543 333
Q ss_pred hhhHHHHH
Q 002876 645 KYMPEFYK 652 (872)
Q Consensus 645 ~~~~~i~~ 652 (872)
+++..++.
T Consensus 415 ~fl~sLL~ 422 (675)
T KOG0212|consen 415 KFLLSLLE 422 (675)
T ss_pred HHHHHHHH
Confidence 44433333
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.68 E-value=6.6e-13 Score=148.40 Aligned_cols=508 Identities=14% Similarity=0.149 Sum_probs=334.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--ChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ--NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~--~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
|+.+++.... .+...|..|-+.|-.+... +...+.......+. +.+...|+++-..+..+...
T Consensus 8 el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~~~------------ 72 (526)
T PF01602_consen 8 ELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS--SKDLELKRLGYLYLSLYLHE------------ 72 (526)
T ss_dssp HHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS--SSSHHHHHHHHHHHHHHTTT------------
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhc------------
Confidence 4445555444 4667777777777655433 33444444444444 45899999999888877653
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002876 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (872)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~ 161 (872)
+++..-.+.+.+.+-|.++|+.+|..|-.+++.+...+ ..+.+++.+.+++.++++.+|..|+.++..++..
T Consensus 73 ----~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~----~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~ 144 (526)
T PF01602_consen 73 ----DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPE----MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK 144 (526)
T ss_dssp ----SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHH----HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH
T ss_pred ----chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccc----hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc
Confidence 45556667888889999999999999999999988543 5688999999999999999999999999999988
Q ss_pred ccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 002876 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (872)
Q Consensus 162 ~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~ 241 (872)
. |+.+ ... +++.+.+.+. |+++.|+.+|+.++..+ ...++.+. ...+.+.+.+...+..+++-.+..+++
T Consensus 145 ~-p~~~-~~~---~~~~l~~lL~--d~~~~V~~~a~~~l~~i-~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~ 214 (526)
T PF01602_consen 145 D-PDLV-EDE---LIPKLKQLLS--DKDPSVVSAALSLLSEI-KCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILR 214 (526)
T ss_dssp C-HCCH-HGG---HHHHHHHHTT--HSSHHHHHHHHHHHHHH-HCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred C-HHHH-HHH---HHHHHhhhcc--CCcchhHHHHHHHHHHH-ccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHH
Confidence 6 6655 221 5677777776 88999999999999987 22222211 112455666666667889999999999
Q ss_pred HHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhH
Q 002876 242 CLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVL 321 (872)
Q Consensus 242 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 321 (872)
++..++...+..... ..+++.+...+++.++.+...++.++..+... ...+..+
T Consensus 215 ~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~------------------------~~~~~~~ 268 (526)
T PF01602_consen 215 LLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS------------------------PELLQKA 268 (526)
T ss_dssp HHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------------------------HHHHHHH
T ss_pred HHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc------------------------hHHHHhh
Confidence 998876654443211 45666666666777778888888777655431 1134455
Q ss_pred HHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCC
Q 002876 322 VPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE 401 (872)
Q Consensus 322 ~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~ 401 (872)
++.+...+.. .+.++|..+.+++..++...+..+. .....+.....+++..+|..++..+..++...
T Consensus 269 ~~~L~~lL~s---------~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~--- 335 (526)
T PF01602_consen 269 INPLIKLLSS---------SDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANES--- 335 (526)
T ss_dssp HHHHHHHHTS---------SSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH---
T ss_pred HHHHHHHhhc---------ccchhehhHHHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhccccc---
Confidence 6666666652 1147888777887777665522222 11111222233667788999998888887532
Q ss_pred cchHHHHHHHHHHHHHhccCC-cHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHH
Q 002876 402 KLVPLVNIALNFMLTALMQDP-NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACG 479 (872)
Q Consensus 402 ~~~~~~~~i~~~l~~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~ 479 (872)
.+..+++.+...+ .+. ++.+|..+...++.++...+. .....++.+++.+.. +..+...+..
T Consensus 336 ----n~~~Il~eL~~~l-~~~~d~~~~~~~i~~I~~la~~~~~-----------~~~~~v~~l~~ll~~~~~~~~~~~~~ 399 (526)
T PF01602_consen 336 ----NVKEILDELLKYL-SELSDPDFRRELIKAIGDLAEKFPP-----------DAEWYVDTLLKLLEISGDYVSNEIIN 399 (526)
T ss_dssp ----HHHHHHHHHHHHH-HHC--HHHHHHHHHHHHHHHHHHGS-----------SHHHHHHHHHHHHHCTGGGCHCHHHH
T ss_pred ----chhhHHHHHHHHH-HhccchhhhhhHHHHHHHHHhccCc-----------hHHHHHHHHHHhhhhccccccchHHH
Confidence 2445566666666 444 677999999999999998742 234566666666664 4566666777
Q ss_pred HHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHH
Q 002876 480 ALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQ 559 (872)
Q Consensus 480 al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 559 (872)
.+..++...+ + .-..++..+...+.+.. ++.++..+++.+|......+.. . ....++..+.+.+..
T Consensus 400 ~i~~ll~~~~------~----~~~~~l~~L~~~l~~~~--~~~~~~~~~wilGEy~~~~~~~-~-~~~~~~~~l~~~~~~ 465 (526)
T PF01602_consen 400 VIRDLLSNNP------E----LREKILKKLIELLEDIS--SPEALAAAIWILGEYGELIENT-E-SAPDILRSLIENFIE 465 (526)
T ss_dssp HHHHHHHHST------T----THHHHHHHHHHHHTSSS--SHHHHHHHHHHHHHHCHHHTTT-T-HHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCh------h----hhHHHHHHHHHHHHHhh--HHHHHHHHHhhhcccCCccccc-c-cHHHHHHHHHHhhcc
Confidence 7888876532 2 23456777777776654 5678888999999888777651 1 233444444444321
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHh--ccccchhhHHHHHHHH
Q 002876 560 TLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFA--IRSATAHEEAMLAIGA 634 (872)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~--~~~~~~~~~a~~~l~~ 634 (872)
++. .++..++.++..+....+..+ ..+.+++.+.+... +.+.++|+.|...+.-
T Consensus 466 ---------~~~----~vk~~ilt~~~Kl~~~~~~~~--------~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~l 521 (526)
T PF01602_consen 466 ---------ESP----EVKLQILTALAKLFKRNPENE--------VQNEILQFLLSLATEDSSDPEVRDRAREYLRL 521 (526)
T ss_dssp ---------SHH----HHHHHHHHHHHHHHHHSCSTT--------HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHH
T ss_pred ---------ccH----HHHHHHHHHHHHHHhhCCchh--------hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 111 355667778877777655431 23467777777777 6788899888765543
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.66 E-value=1.4e-11 Score=137.78 Aligned_cols=493 Identities=16% Similarity=0.151 Sum_probs=293.8
Q ss_pred HHHHHHHHHhcCCC--ChHHHH-HHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcccccc
Q 002876 91 AQIKSFILKTLSSP--AHDARS-TASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV 167 (872)
Q Consensus 91 ~~i~~~ll~~l~~~--~~~vr~-~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l 167 (872)
..+.+.+-+.+.+. +..-+. ....++..... + .....+++.+++.+.+.+...|+.+...+..+...- +
T Consensus 3 ~~~~~el~~~~~~~~~~~~~~~~~l~kli~~~~~---G-~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~--- 74 (526)
T PF01602_consen 3 KRISQELAKILNSFKIDISKKKEALKKLIYLMML---G-YDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHED-P--- 74 (526)
T ss_dssp HHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHHHT---T----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS-H---
T ss_pred chHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc---C-CCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc-h---
Confidence 34555566666665 443333 33334333332 3 355678888899999888888888888887776644 2
Q ss_pred chhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 002876 168 EQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247 (872)
Q Consensus 168 ~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~ 247 (872)
+...-+...+.+.+. ++++.+|..|+++++++.. ....+.+.+.+..++.++++.+|+.|+.++..+.
T Consensus 75 --~~~~l~~n~l~kdl~--~~n~~~~~lAL~~l~~i~~--------~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~ 142 (526)
T PF01602_consen 75 --ELLILIINSLQKDLN--SPNPYIRGLALRTLSNIRT--------PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIY 142 (526)
T ss_dssp --HHHHHHHHHHHHHHC--SSSHHHHHHHHHHHHHH-S--------HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHhhc--CCCHHHHHHHHhhhhhhcc--------cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 234556777788888 8999999999999999542 1223567888888899999999999999999999
Q ss_pred HHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHH
Q 002876 248 STYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLE 327 (872)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 327 (872)
+.+|+.+... +++.+...+.|.++.++..|+.++..+ +..+ ......++.++..+.+
T Consensus 143 ~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~-------------------~~~~~~~~~~~~~L~~ 199 (526)
T PF01602_consen 143 RKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-KCND-------------------DSYKSLIPKLIRILCQ 199 (526)
T ss_dssp HHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH-------------------HHHTTHHHHHHHHHHH
T ss_pred ccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-ccCc-------------------chhhhhHHHHHHHhhh
Confidence 9988766553 466666677888899999999888777 2110 1111333444444444
Q ss_pred HHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcc--h--hchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcc
Q 002876 328 TLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDI--V--PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL 403 (872)
Q Consensus 328 ~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~--~--~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~ 403 (872)
.+.. .+.|... .++..+....+... . ..+++.+...+.+.++.+...+..++..+....
T Consensus 200 ~l~~--------~~~~~q~----~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~----- 262 (526)
T PF01602_consen 200 LLSD--------PDPWLQI----KILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP----- 262 (526)
T ss_dssp HHTC--------CSHHHHH----HHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-----
T ss_pred cccc--------cchHHHH----HHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-----
Confidence 3321 1225321 23333332222111 1 234555555555666677777766666554321
Q ss_pred hHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhc-cCChhHHHHHHHHHH
Q 002876 404 VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSM-KDVPNVAEKACGALY 482 (872)
Q Consensus 404 ~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l-~d~~~v~~~a~~al~ 482 (872)
+.+..+++.+...+ .++++.+|..++.++..++...+. ... . .-+ .+.... .++..+|..+...+.
T Consensus 263 -~~~~~~~~~L~~lL-~s~~~nvr~~~L~~L~~l~~~~~~------~v~--~--~~~-~~~~l~~~~d~~Ir~~~l~lL~ 329 (526)
T PF01602_consen 263 -ELLQKAINPLIKLL-SSSDPNVRYIALDSLSQLAQSNPP------AVF--N--QSL-ILFFLLYDDDPSIRKKALDLLY 329 (526)
T ss_dssp -HHHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHCCHCHH------HHG--T--HHH-HHHHHHCSSSHHHHHHHHHHHH
T ss_pred -HHHHhhHHHHHHHh-hcccchhehhHHHHHHHhhcccch------hhh--h--hhh-hhheecCCCChhHHHHHHHHHh
Confidence 14566677777777 777777887777777777665420 000 0 001 111111 134555555555555
Q ss_pred HHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHh
Q 002876 483 FLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLE 562 (872)
Q Consensus 483 ~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 562 (872)
.++..- ....+++.+...+.+.. ++.
T Consensus 330 ~l~~~~------------n~~~Il~eL~~~l~~~~--d~~---------------------------------------- 355 (526)
T PF01602_consen 330 KLANES------------NVKEILDELLKYLSELS--DPD---------------------------------------- 355 (526)
T ss_dssp HH--HH------------HHHHHHHHHHHHHHHC----HH----------------------------------------
T ss_pred hccccc------------chhhHHHHHHHHHHhcc--chh----------------------------------------
Confidence 554321 22333333333331111 112
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhh
Q 002876 563 AQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQD 642 (872)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 642 (872)
++..+...+..++..... ..+..++.+++++...+..+..+++..+..++...+..
T Consensus 356 --------------~~~~~i~~I~~la~~~~~----------~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~ 411 (526)
T PF01602_consen 356 --------------FRRELIKAIGDLAEKFPP----------DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL 411 (526)
T ss_dssp --------------HHHHHHHHHHHHHHHHGS----------SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT
T ss_pred --------------hhhhHHHHHHHHHhccCc----------hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh
Confidence 233345555555555432 24455666666666666666777777777766553332
Q ss_pred hHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHH
Q 002876 643 FLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIAL 722 (872)
Q Consensus 643 ~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~ 722 (872)
. ..++..+.+.+.+..+++++..++|++|.++...+. .. ....++..+.+.+... +..+|..++.++..+..
T Consensus 412 ~----~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~--~~~vk~~ilt~~~Kl~~ 483 (526)
T PF01602_consen 412 R----EKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEE--SPEVKLQILTALAKLFK 483 (526)
T ss_dssp H----HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHH
T ss_pred h----HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccc--cHHHHHHHHHHHHHHHh
Confidence 2 234555566665556678999999999999888765 12 5677888888887766 56788999999999998
Q ss_pred HhccchHHhHHHHHHHHHHHHh
Q 002876 723 AIGENFEKYLMYAMPMLQSAAE 744 (872)
Q Consensus 723 ~~~~~~~~~l~~il~~l~~~l~ 744 (872)
..+..- .-+.+++.+.....
T Consensus 484 ~~~~~~--~~~~i~~~~~~~~~ 503 (526)
T PF01602_consen 484 RNPENE--VQNEILQFLLSLAT 503 (526)
T ss_dssp HSCSTT--HHHHHHHHHHCHHH
T ss_pred hCCchh--hHHHHHHHHHHHhc
Confidence 776431 12355666665554
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=99.62 E-value=1.7e-10 Score=127.35 Aligned_cols=400 Identities=10% Similarity=0.032 Sum_probs=246.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--ChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ--NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~--~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
++.++-..+.+.+...|+.|-+.+-.+... +...+.......+.+ .+...|++.-..+.++.+
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S--~d~elKKLvYLYL~~ya~------------- 97 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPS--TDLELKKLVYLYVLSTAR------------- 97 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcc-------------
Confidence 445555666677777788888777654433 444455555555543 489999999999888765
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002876 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (872)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~ 161 (872)
..++..-...+.+.+-+.++|+.+|..|-.+++.+-. + ...+.+++.+.+++.+.++.+|..|..++.+++..
T Consensus 98 ---~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~---~-~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 98 ---LQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV---S-SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred ---cChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc---H-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 2355555667888889999999999888887766543 2 35567788889999999999999999999999876
Q ss_pred ccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 002876 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (872)
Q Consensus 162 ~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~ 241 (872)
. |+.+.. ..+++.+...+. |.++.|...|+.+|..+....++.+. .. ...+..+...+.+-++..+..+++
T Consensus 171 ~-pelv~~---~~~~~~L~~LL~--D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~-~~~~~~Ll~~L~e~~EW~Qi~IL~ 241 (746)
T PTZ00429 171 D-MQLFYQ---QDFKKDLVELLN--DNNPVVASNAAAIVCEVNDYGSEKIE--SS-NEWVNRLVYHLPECNEWGQLYILE 241 (746)
T ss_pred C-cccccc---cchHHHHHHHhc--CCCccHHHHHHHHHHHHHHhCchhhH--HH-HHHHHHHHHHhhcCChHHHHHHHH
Confidence 5 654411 123344444456 89999999999999987653332221 11 123333444444445555666666
Q ss_pred HHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhH
Q 002876 242 CLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVL 321 (872)
Q Consensus 242 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 321 (872)
.|.. ..|.. ......++..+...+++.++.|...|+.++..+.... .....+..+..+
T Consensus 242 lL~~---y~P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~------------------~~~~~~~~~~rl 299 (746)
T PTZ00429 242 LLAA---QRPSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC------------------SQELIERCTVRV 299 (746)
T ss_pred HHHh---cCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC------------------CHHHHHHHHHHH
Confidence 6643 21211 2223467777777788888889888888776664310 012233333333
Q ss_pred HHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCC
Q 002876 322 VPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE 401 (872)
Q Consensus 322 ~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~ 401 (872)
-+.++..... + -+++..+...+..+....+.-+.+.+ ..+-...+|+. .+|...+..+..++...+
T Consensus 300 ~~pLv~L~ss---~-------~eiqyvaLr~I~~i~~~~P~lf~~~~-~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~N-- 365 (746)
T PTZ00429 300 NTALLTLSRR---D-------AETQYIVCKNIHALLVIFPNLLRTNL-DSFYVRYSDPP-FVKLEKLRLLLKLVTPSV-- 365 (746)
T ss_pred HHHHHHhhCC---C-------ccHHHHHHHHHHHHHHHCHHHHHHHH-HhhhcccCCcH-HHHHHHHHHHHHHcCccc--
Confidence 3434433221 1 24565566666666665543333322 22222234444 467777877777765432
Q ss_pred cchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHH
Q 002876 402 KLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGAL 481 (872)
Q Consensus 402 ~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al 481 (872)
+..++..+.... .+.+..++..+..++|+++..++ .....++..|++.+.++..+...++..+
T Consensus 366 -----v~~IL~EL~eYa-~d~D~ef~r~aIrAIg~lA~k~~-----------~~a~~cV~~Ll~ll~~~~~~v~e~i~vi 428 (746)
T PTZ00429 366 -----APEILKELAEYA-SGVDMVFVVEVVRAIASLAIKVD-----------SVAPDCANLLLQIVDRRPELLPQVVTAA 428 (746)
T ss_pred -----HHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHhCh-----------HHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 355566666677 77778888888888888887653 2344666666666654333333455555
Q ss_pred HHHHHh
Q 002876 482 YFLAQG 487 (872)
Q Consensus 482 ~~l~~~ 487 (872)
..+++.
T Consensus 429 k~Ilrk 434 (746)
T PTZ00429 429 KDIVRK 434 (746)
T ss_pred HHHHHH
Confidence 555554
No 37
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=3.7e-12 Score=127.44 Aligned_cols=368 Identities=14% Similarity=0.089 Sum_probs=266.9
Q ss_pred cchHhHHHHHHHHHHHHHc-CCcc---hhchHH-HHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 002876 342 AWNIAMAGGTCLGLVARTV-GDDI---VPLVMP-FVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLT 416 (872)
Q Consensus 342 ~~~~r~~a~~~l~~l~~~~-~~~~---~~~l~~-~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 416 (872)
.++-|++|+--+..+...+ ...- +..++. ...+...+++-..|.+++.++++++-+.+.+.. .|+..+++.++.
T Consensus 13 lYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~-~Y~~~iv~Pv~~ 91 (675)
T KOG0212|consen 13 LYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDA-GYLEKIVPPVLN 91 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccH-HHHHHhhHHHHH
Confidence 3566888888887777654 2221 233333 444666777777888999999998777764444 499999999999
Q ss_pred HhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCC
Q 002876 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPS 495 (872)
Q Consensus 417 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~ 495 (872)
++ +|++.+||..||..+-++++...++ .-.|++.++..+.+...| +..|+.. +..+..+.+.... .
T Consensus 92 cf-~D~d~~vRyyACEsLYNiaKv~k~~-------v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVt----e 158 (675)
T KOG0212|consen 92 CF-SDQDSQVRYYACESLYNIAKVAKGE-------VLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVT----E 158 (675)
T ss_pred hc-cCccceeeeHhHHHHHHHHHHhccC-------cccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhcc----c
Confidence 99 9999999999999999999987543 356888999988888877 4566554 4577777665321 1
Q ss_pred CCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHH
Q 002876 496 SPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQN 575 (872)
Q Consensus 496 ~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 575 (872)
+.-.=.++.+++.+-..+... ++..|...+..+..+-..-+-++..|++.+++-++..+.. +..
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~---n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD---------~s~---- 222 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVI---NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSD---------SSD---- 222 (675)
T ss_pred cccccCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcC---------CcH----
Confidence 221336788888888877665 4667877777666655555556778888888888887743 222
Q ss_pred HHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHH
Q 002876 576 EIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVE 655 (872)
Q Consensus 576 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~ 655 (872)
++|..+-.+++.+......+.. .-..+.+.+.+..-++++++.++..|+..+-.++...|.++.+|++.++..++
T Consensus 223 eVr~~~~t~l~~fL~eI~s~P~-----s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iL 297 (675)
T KOG0212|consen 223 EVRTLTDTLLSEFLAEIRSSPS-----SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAIL 297 (675)
T ss_pred HHHHHHHHHHHHHHHHHhcCcc-----ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcc
Confidence 2343344556666555543311 10345667777777888888899999999999999999999999999999999
Q ss_pred hhhcCCChhhHHHHHHHHHHHHHHHHhcccc---ccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhH
Q 002876 656 MGLQNFEDYQVCAITVGVVGDLCRALEDKIL---PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYL 732 (872)
Q Consensus 656 ~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l 732 (872)
.++.+.+...++..+...-+.+..-++.... -....+++.+.+.+.++ ..+.|-+++..+..+-...+..+..+.
T Consensus 298 pc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~ 375 (675)
T KOG0212|consen 298 PCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHN 375 (675)
T ss_pred cCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhc
Confidence 9998776544555555444444443332211 23458899999999888 678899999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 002876 733 MYAMPMLQSAAELS 746 (872)
Q Consensus 733 ~~il~~l~~~l~~~ 746 (872)
+.+++.+++.+++.
T Consensus 376 ~~if~tLL~tLsd~ 389 (675)
T KOG0212|consen 376 DSIFLTLLKTLSDR 389 (675)
T ss_pred cHHHHHHHHhhcCc
Confidence 99999999999876
No 38
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.58 E-value=6.7e-11 Score=128.70 Aligned_cols=544 Identities=13% Similarity=0.121 Sum_probs=360.8
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhH-HHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccc
Q 002876 90 KAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPEL-IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE 168 (872)
Q Consensus 90 ~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l-~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~ 168 (872)
+..+-+.+.+.. +.+..++..++.-++.+....++ ..+.+. ++.+..........+|+.++..+..++... ++.
T Consensus 119 r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~-~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~-~~~-- 193 (759)
T KOG0211|consen 119 RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGG-PEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGL-PKE-- 193 (759)
T ss_pred hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccc-hhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-ChH--
Confidence 445555666666 56678888888888888876644 344443 334444444445678999999998887766 321
Q ss_pred hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 002876 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS 248 (872)
Q Consensus 169 ~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~ 248 (872)
.....+++.+..... +.--.-|..+++.++......++ ...+..+.+...++.++..+.+|.++.+-++.+++
T Consensus 194 -~~~~~lv~l~~~l~~--~d~~~sr~sacglf~~~~~~~~~----~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~ 266 (759)
T KOG0211|consen 194 -KLREHLVPLLKRLAT--GDWFQSRLSACGLFGKLYVSLPD----DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAK 266 (759)
T ss_pred -HHHHHHHHHHHHccc--hhhhhcchhhhhhhHHhccCCCh----HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHH
Confidence 123444555444333 21223466777777765433321 22346778888888999999999999999999988
Q ss_pred HhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHH
Q 002876 249 TYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLET 328 (872)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 328 (872)
..+.. .-...+++.......|+.+.||..|.+.+.++.+.... . ......+.+.+++.
T Consensus 267 ~~~~~--~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~-----------------~---~d~~~~~~~~l~~~ 324 (759)
T KOG0211|consen 267 VLESE--IVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDD-----------------D---DDVVKSLTESLVQA 324 (759)
T ss_pred HHHHH--HHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCC-----------------c---hhhhhhhhHHHHHH
Confidence 77652 22235666666677788888999999888777653210 0 01122233444432
Q ss_pred HhcccCCcccCCccchHhHHHHHHHHHHHHHcCC-cchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchH-H
Q 002876 329 LLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD-DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVP-L 406 (872)
Q Consensus 329 l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~ 406 (872)
. ++..|.+|...++....+...+|. ...+...+.....+++..|..|.+...-...+........... .
T Consensus 325 ~---------~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~ 395 (759)
T KOG0211|consen 325 V---------EDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIP 395 (759)
T ss_pred h---------cChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccc
Confidence 1 135588888888887778877754 4566778888888899999999998876666665543111111 2
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHH
Q 002876 407 VNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLA 485 (872)
Q Consensus 407 ~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
...++|.+.... .|.+..||.+.+.....+....+. ..-+..++|.++..++| .+.|+....+.+..+-
T Consensus 396 ~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~k---------~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~ 465 (759)
T KOG0211|consen 396 DSSILPEVQVLV-LDNALHVRSALASVITGLSPILPK---------ERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLE 465 (759)
T ss_pred hhhhhHHHHHHH-hcccchHHHHHhccccccCccCCc---------CcCccccChhhhhhcchhhHHHHHhhHHHHHHHH
Confidence 245678888888 999999999988777766665542 34455778888888887 6899988887765544
Q ss_pred HhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhc
Q 002876 486 QGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQK 565 (872)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 565 (872)
...+ ...+..+-+..++.+.....+. ..++|...++.+-.++...+. +++.+-+..++..|.
T Consensus 466 ~v~~-----v~g~~~~s~slLp~i~el~~d~---~wRvr~ail~~ip~la~q~~~---~~~~~~~~~l~~~~l------- 527 (759)
T KOG0211|consen 466 EVND-----VIGISTVSNSLLPAIVELAEDL---LWRVRLAILEYIPQLALQLGV---EFFDEKLAELLRTWL------- 527 (759)
T ss_pred hccC-----cccchhhhhhhhhhhhhhccch---hHHHHHHHHHHHHHHHHhhhh---HHhhHHHHHHHHhhh-------
Confidence 3321 2334445566666666655443 577888888888777777763 333333444444432
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHh
Q 002876 566 LSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLK 645 (872)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 645 (872)
.+..+.++.++...+..++..+|... +...+++.++.....++...|...+.++..++..+|..+.
T Consensus 528 -----~d~v~~Ir~~aa~~l~~l~~~~G~~w--------~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~- 593 (759)
T KOG0211|consen 528 -----PDHVYSIREAAARNLPALVETFGSEW--------ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEIT- 593 (759)
T ss_pred -----hhhHHHHHHHHHHHhHHHHHHhCcch--------hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHH-
Confidence 12234677889999999999999542 3455667777776666788899999999999999998654
Q ss_pred hhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHh
Q 002876 646 YMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAI 724 (872)
Q Consensus 646 ~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~ 724 (872)
...++|.+.....+. .++||..++..+..+...+..... =..+.+.+..+-+++ +.++|-.+..+++.+....
T Consensus 594 -~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~~~~--~~~v~pll~~L~~d~--~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 594 -CEDLLPVFLDLVKDP-VANVRINVAKHLPKILKLLDESVR--DEEVLPLLETLSSDQ--ELDVRYRAILAFGSIELSR 666 (759)
T ss_pred -HHHHhHHHHHhccCC-chhhhhhHHHHHHHHHhhcchHHH--HHHHHHHHHHhccCc--ccchhHHHHHHHHHHHHHH
Confidence 456778777766544 569999999999988887753221 223455555555555 6788888888888887654
No 39
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=7.4e-13 Score=135.00 Aligned_cols=358 Identities=14% Similarity=0.151 Sum_probs=247.7
Q ss_pred HHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCc
Q 002876 371 FVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETP 449 (872)
Q Consensus 371 ~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 449 (872)
.+.+.+.+.+...+..+...+..+........+...+ ..++|.+...+..+.++.++..|+|+|.+++......
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~----- 144 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ----- 144 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh-----
Confidence 3444455555556777777777766554222222222 5678888888834778999999999999999965421
Q ss_pred ccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhH--HHHHHHHHHhhccCCchhhhhHHH
Q 002876 450 IINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAGESRLRTA 526 (872)
Q Consensus 450 ~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l--~~i~~~l~~~l~~~~~~~~~v~~~ 526 (872)
..-..-...+|.++..+.+ +..|++.|.|||++++... ..+..|. ..+++.|+..+.... .-.+...
T Consensus 145 -T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds-------~~~Rd~vl~~g~l~pLl~~l~~~~--~~~~lRn 214 (514)
T KOG0166|consen 145 -TKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDS-------PDCRDYVLSCGALDPLLRLLNKSD--KLSMLRN 214 (514)
T ss_pred -ccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCC-------hHHHHHHHhhcchHHHHHHhcccc--chHHHHH
Confidence 1111223567888888886 6899999999999997542 2233332 245677777776653 2245568
Q ss_pred HHHHHHHHHHcc-ccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHh
Q 002876 527 AYETLNEVVRCS-TDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQY 605 (872)
Q Consensus 527 ~~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 605 (872)
+.+++..+.+.. |......+..++|.+...+.. .|++ +..-+|.+++.+....... +.-.
T Consensus 215 ~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~---------~D~~----Vl~Da~WAlsyLsdg~ne~------iq~v 275 (514)
T KOG0166|consen 215 ATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHS---------TDEE----VLTDACWALSYLTDGSNEK------IQMV 275 (514)
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhc---------CCHH----HHHHHHHHHHHHhcCChHH------HHHH
Confidence 999999999987 433445567777777766643 3443 3456888888876433222 3333
Q ss_pred H-HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH-HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhc
Q 002876 606 A-DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP-EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALED 683 (872)
Q Consensus 606 ~-~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 683 (872)
. -.+++.+..+|.+.+..++..|+.++|+++.+.+.+..-.+. ..+|.+...+.+.....+++.|+|.++.+.....+
T Consensus 276 i~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~ 355 (514)
T KOG0166|consen 276 IDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQE 355 (514)
T ss_pred HHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH
Confidence 3 258899999999999999999999999998877766555554 48888888888555557999999999999886666
Q ss_pred cccccHH-HHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHH--HHHHHHHHHHhhccCCCCCCccHHHHH
Q 002876 684 KILPYCD-GIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLM--YAMPMLQSAAELSVHTSGVDDDMTEYT 760 (872)
Q Consensus 684 ~~~~~~~-~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~--~il~~l~~~l~~~~~~~~~d~~~~~~~ 760 (872)
++...++ +++|.|+.++++. +-.+|..+.|+++.++.....+-..|+- .+++.+...+... |.
T Consensus 356 qiqaVida~l~p~Li~~l~~~--ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~------D~------ 421 (514)
T KOG0166|consen 356 QIQAVIDANLIPVLINLLQTA--EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP------DV------ 421 (514)
T ss_pred HHHHHHHcccHHHHHHHHhcc--chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCC------Ch------
Confidence 6655554 6899999999998 5779999999999998766655555654 3678888777433 21
Q ss_pred HHHHHHHHHHHHHHhhc
Q 002876 761 NSLRNGILEAFSGIFQG 777 (872)
Q Consensus 761 ~~~~~~~~~~~~~l~~~ 777 (872)
.+-..++.++..++..
T Consensus 422 -~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 422 -KIILVALDGLENILKV 437 (514)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 2233466666666553
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=99.57 E-value=5.7e-10 Score=123.32 Aligned_cols=438 Identities=12% Similarity=0.047 Sum_probs=283.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhc-CCCChhHHHHHHHHHhcccccchhhhHHHhhh
Q 002876 2 SAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN-DEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (872)
Q Consensus 2 ~~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~-~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (872)
+.-+..++....++|-.+|+-..-+|..+.+.+++..+...-.+..| .+.++.+|-+|+..|.+.-
T Consensus 67 S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir------------- 133 (746)
T PTZ00429 67 SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR------------- 133 (746)
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------------
Confidence 44466777888889999999999999999876654333322222222 1458899999998887633
Q ss_pred hccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCC-CchhHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002876 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK-QWPELIGALLSNIHQLPPHTKQATLETLGYIC 159 (872)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~ 159 (872)
.++..+.+...+.+++.|+++.||+.|+-++.++.... |+- .-.++++.|.+++.+.++.+...|+.+|..+.
T Consensus 134 -----~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 134 -----VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred -----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 35667778888999999999999999999999998865 421 12356777888889999999999999999998
Q ss_pred hhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHH
Q 002876 160 EEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAA 239 (872)
Q Consensus 160 ~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~ 239 (872)
+.. |+.+ ......+..++..+. +-+.=.+...++++.. +.+. +......+++.+...+++.++.|.-.+
T Consensus 208 ~~~-~~~l--~l~~~~~~~Ll~~L~--e~~EW~Qi~IL~lL~~---y~P~---~~~e~~~il~~l~~~Lq~~N~AVVl~A 276 (746)
T PTZ00429 208 DYG-SEKI--ESSNEWVNRLVYHLP--ECNEWGQLYILELLAA---QRPS---DKESAETLLTRVLPRMSHQNPAVVMGA 276 (746)
T ss_pred HhC-chhh--HHHHHHHHHHHHHhh--cCChHHHHHHHHHHHh---cCCC---CcHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 765 4433 223333444555555 4455556677777654 3332 112235678888888888899999999
Q ss_pred HHHHHHHHHHh-HHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhh
Q 002876 240 FECLVAISSTY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL 318 (872)
Q Consensus 240 ~~~l~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (872)
++++..+.... ++.+...+..+-..++.. .+.+++++..++..+..+....+. .+.+.+
T Consensus 277 ik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~-------------------lf~~~~ 336 (746)
T PTZ00429 277 IKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPN-------------------LLRTNL 336 (746)
T ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHH-------------------HHHHHH
Confidence 99988876532 222222233333433333 345677888888777666653321 122111
Q ss_pred hhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCC
Q 002876 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGP 398 (872)
Q Consensus 319 ~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~ 398 (872)
...+ ... .|+ ..+|. ..|+.+.....+.-+..++.-+.++..+.+...+..++.++|.++...
T Consensus 337 ----~~Ff---~~~-~Dp------~yIK~---~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~ 399 (746)
T PTZ00429 337 ----DSFY---VRY-SDP------PFVKL---EKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV 399 (746)
T ss_pred ----Hhhh---ccc-CCc------HHHHH---HHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 1111 111 111 13454 444445554555556667777888888877888999999999998654
Q ss_pred CCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhc--c--CChhHH
Q 002876 399 SPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSM--K--DVPNVA 474 (872)
Q Consensus 399 ~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l--~--d~~~v~ 474 (872)
......++..++..+ .+....+ ..++.++..+....+. . .++..+...+ . +++..+
T Consensus 400 -----~~~a~~cV~~Ll~ll-~~~~~~v-~e~i~vik~IlrkyP~----------~---~il~~L~~~~~~~~i~e~~AK 459 (746)
T PTZ00429 400 -----DSVAPDCANLLLQIV-DRRPELL-PQVVTAAKDIVRKYPE----------L---LMLDTLVTDYGADEVVEEEAK 459 (746)
T ss_pred -----hHHHHHHHHHHHHHh-cCCchhH-HHHHHHHHHHHHHCcc----------H---HHHHHHHHhhcccccccHHHH
Confidence 244567778888888 6554434 4567777777776541 1 2455555543 2 367888
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHcccc
Q 002876 475 EKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (872)
Q Consensus 475 ~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~ 540 (872)
....|.++.+++..+ ..+.++..++..+... ++.+|..++.+...+.-..+.
T Consensus 460 aaiiWILGEy~~~I~-----------~a~~~L~~~i~~f~~E---~~~VqlqlLta~vKlfl~~p~ 511 (746)
T PTZ00429 460 VSLLWMLGEYCDFIE-----------NGKDIIQRFIDTIMEH---EQRVQLAILSAAVKMFLRDPQ 511 (746)
T ss_pred HHHHHHHHhhHhhHh-----------hHHHHHHHHHhhhccC---CHHHHHHHHHHHHHHHhcCcH
Confidence 888999999976532 2345565555555443 467887777777766666553
No 41
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=8.6e-09 Score=108.59 Aligned_cols=669 Identities=14% Similarity=0.144 Sum_probs=363.0
Q ss_pred CCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHhhcC-C
Q 002876 50 EKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSP--AHDARSTASQVVAKVAGIELP-H 126 (872)
Q Consensus 50 ~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~--~~~vr~~~a~~l~~i~~~~~~-~ 126 (872)
+.++.+|.-|=..|+..-.. +..--.+++++.++ ++.+|..++..+....+..|. +
T Consensus 16 ~pdps~rk~aEr~L~~~e~q---------------------~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~ 74 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSLEGQ---------------------QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPA 74 (960)
T ss_pred CCCCccCchHHHHHHHhccC---------------------CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcC
Confidence 33578888887666553221 11112366777665 589999999999988886542 1
Q ss_pred C-C-------chhHHHH-HHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHH
Q 002876 127 K-Q-------WPELIGA-LLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAAT 197 (872)
Q Consensus 127 ~-~-------~~~l~~~-l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al 197 (872)
. . -.+.+.. ++.++-+....+...--+++..|.+. .+ ...++.++|-+...++ ..|-.+-...+
T Consensus 75 ~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~----DF-P~kWptLl~dL~~~ls--~~D~~~~~gVL 147 (960)
T KOG1992|consen 75 EDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKR----DF-PDKWPTLLPDLVARLS--SGDFNVINGVL 147 (960)
T ss_pred CCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcc----cc-chhhHHHHHHHHhhcc--ccchHHHHHHH
Confidence 1 1 1233333 33444444345554445555555442 23 4678999999999888 45655555555
Q ss_pred HHHHHhHhhchhhccChhhHH--------------HHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHh--------HHh
Q 002876 198 RALYNALGFAQANFSNDMERD--------------YIMRVVCEAT--LSPEVKIRQAAFECLVAISSTY--------YEK 253 (872)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~--------------~il~~l~~~~--~~~~~~~r~~~~~~l~~l~~~~--------~~~ 253 (872)
.+-.++....+..+....-+. .++....+.+ .+++...-...+..+.-+++.+ |++
T Consensus 148 ~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEF 227 (960)
T KOG1992|consen 148 VTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEF 227 (960)
T ss_pred HHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 555555443333333222111 1222222233 2334444444555555555444 578
Q ss_pred hHhhHHHHHHHHHHHHhcC------Ch-------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhh
Q 002876 254 LAPYIQDIFNITAKAVRED------EE-------PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPV 320 (872)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~------~~-------~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (872)
|+.+++..++.+...++.+ ++ +++...+|.+.-.+. +|+ +-+.++++.
T Consensus 228 FEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~-------kYe------------Eef~~fl~~ 288 (960)
T KOG1992|consen 228 FEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYAT-------KYE------------EEFQPFLPD 288 (960)
T ss_pred HHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHH-------hhH------------HHHHhhHHH
Confidence 8888888888887776521 11 234444444443333 222 345677777
Q ss_pred HHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHc-------CCcch-----------------------hchHH
Q 002876 321 LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-------GDDIV-----------------------PLVMP 370 (872)
Q Consensus 321 l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~-------~~~~~-----------------------~~l~~ 370 (872)
.+.+....+.....++..| .....|...|..+++.- ++.++ +.-+.
T Consensus 289 fv~~~W~LL~~~s~~~kyD----~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~ple 364 (960)
T KOG1992|consen 289 FVTATWNLLVSTSPDTKYD----YLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLE 364 (960)
T ss_pred HHHHHHHHHHhcCCCccHH----HHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHH
Confidence 7777777665443332111 22233444444444321 11111 11233
Q ss_pred HHHhhhcCcc-hhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCC--cHHHHHHHHHHHHHhhhhccCCCCC
Q 002876 371 FVEENITKQE-WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP--NNHVKDTTAWTLGRMFEFLHGSTLE 447 (872)
Q Consensus 371 ~l~~~~~~~~-~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (872)
++...+...+ -..|.+|+-.++.++.... ..+...+..-+..++...+.+| +|+-+..+...+..++........
T Consensus 365 YiRRDlEGsDvdTRRR~a~dlvrgL~~~fe-~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~- 442 (960)
T KOG1992|consen 365 YIRRDLEGSDVDTRRRAAIDLVRGLCKNFE-GQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKH- 442 (960)
T ss_pred HHHHhcccCCcchhHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhc-
Confidence 4444444433 3457888888888888762 4444444444444433221443 788888898888888776321100
Q ss_pred Cccc--------CccchHHHHHHHHH-hccCChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCc
Q 002876 448 TPII--------NQGNCQQIISVLLQ-SMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDA 518 (872)
Q Consensus 448 ~~~~--------~~~~~~~il~~l~~-~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~ 518 (872)
+.. ..-+...++|.|.+ ...+.|-++..+..-+..|-.. .-.+++-..++.+...++..
T Consensus 443 -Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q---------l~~~~lm~~~p~li~~L~a~-- 510 (960)
T KOG1992|consen 443 -GVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQ---------LGKEHLMALLPRLIRFLEAE-- 510 (960)
T ss_pred -ceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeeccc---------CChHHHHHHHHHHHHhccCc--
Confidence 111 11233445555554 3334566777666555555332 23357788888889888775
Q ss_pred hhhhhHHHHHHHHHHHHHcccc---------CcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 002876 519 GESRLRTAAYETLNEVVRCSTD---------ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVII 589 (872)
Q Consensus 519 ~~~~v~~~~~~~l~~l~~~~~~---------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 589 (872)
...+.+.|..++..+....+. ...|++..++..+++.+.. +.. .++. .++.++-.++
T Consensus 511 -s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~----p~~-~Ene--------ylmKaImRii 576 (960)
T KOG1992|consen 511 -SRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSL----PGK-AENE--------YLMKAIMRII 576 (960)
T ss_pred -chHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccC----Ccc-cccH--------HHHHHHHHHH
Confidence 355667777777766544433 3455555555555543321 111 1111 2445555555
Q ss_pred HHhCCCcchhhHhhHhHHHHHHHHHHHHhc----c-ccchhhHHHHHHHHHHHHhhh----hhHhhhHHHHHHHHhhhcC
Q 002876 590 QKLGSSEQTKYVFMQYADQMMGLFLRVFAI----R-SATAHEEAMLAIGALAYATGQ----DFLKYMPEFYKYVEMGLQN 660 (872)
Q Consensus 590 ~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~----~-~~~~~~~a~~~l~~l~~~~~~----~~~~~~~~i~~~l~~~l~~ 660 (872)
..+... +.|+++.++..+.+.+.. + ++..-...+..+|-+....++ ....+-..++|.+...+++
T Consensus 577 ~i~~~~------i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~e 650 (960)
T KOG1992|consen 577 SILQSA------IIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSE 650 (960)
T ss_pred HhCHHh------hhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence 544443 667777777777776644 2 333445566677766655442 2345556788888888864
Q ss_pred CChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCc---hhHHHHHHHHHHHhccchH--HhHHHH
Q 002876 661 FEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVK---PPIFSCFGDIALAIGENFE--KYLMYA 735 (872)
Q Consensus 661 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~---~~~~~~l~~i~~~~~~~~~--~~l~~i 735 (872)
+ -.+..-.++.+++.++......+-+....+++. +-++. -++-+ +++...+..+.+.-...+. ..++.+
T Consensus 651 D-I~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~----lLsp~-lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~i 724 (960)
T KOG1992|consen 651 D-IQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPP----LLSPN-LWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGI 724 (960)
T ss_pred H-HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH----hcCHH-HHhhcCCcHHHHHHHHHHHhcCchhhcccccchhH
Confidence 3 235556778888888877655332222222222 22222 12222 3444555555444333333 567778
Q ss_pred HHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHH
Q 002876 736 MPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTA 815 (872)
Q Consensus 736 l~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a 815 (872)
+..+.+.+..+. .|+ ..| ..+..++..+ ....+.||+.+++..+.+.+.+ +..+......
T Consensus 725 LGifqkLiaSka----~Dh--~GF---------~LLn~i~~~~----~~~~~~py~k~i~~llf~Rlqn-skT~kf~k~~ 784 (960)
T KOG1992|consen 725 LGIFQKLIASKA----NDH--HGF---------YLLNTIIESI----PPNELAPYMKQIFGLLFQRLQN-SKTEKFVKSF 784 (960)
T ss_pred HHHHHHHhcCcc----cch--hHH---------HHHHHHHhcC----CHhhhhHHHHHHHHHHHHHHhc-cCcHHHHHHH
Confidence 888887776652 132 222 1234444442 3445789999999999999987 5566665666
Q ss_pred HHHHHHHHHHhcCC
Q 002876 816 IGVLGDLADTLGSN 829 (872)
Q Consensus 816 ~~~l~~i~~~~g~~ 829 (872)
+-+++-.+...|+.
T Consensus 785 ~vF~~~~~ik~~~~ 798 (960)
T KOG1992|consen 785 IVFFSLFTIKKGGL 798 (960)
T ss_pred HHHHHHHHHHhhhH
Confidence 66666666555544
No 42
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8.1e-08 Score=104.81 Aligned_cols=483 Identities=15% Similarity=0.141 Sum_probs=277.4
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCC-ChHHHHHHHHH
Q 002876 37 GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSP-AHDARSTASQV 115 (872)
Q Consensus 37 ~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~-~~~vr~~~a~~ 115 (872)
.++..|++-+.+ .+..+|+.|+..+++...+ +|.+..+++...++..+.-- +......++-+
T Consensus 341 ~vie~Lls~l~d--~dt~VrWSaAKg~grvt~r---------------lp~~Lad~vi~svid~~~p~e~~~aWHgacLa 403 (1133)
T KOG1943|consen 341 FVIEHLLSALSD--TDTVVRWSAAKGLGRVTSR---------------LPPELADQVIGSVIDLFNPAEDDSAWHGACLA 403 (1133)
T ss_pred HHHHHHHHhccC--CcchhhHHHHHHHHHHHcc---------------CcHHHHHHHHHHHHHhcCcCCchhHHHHHHHH
Confidence 455556555554 5899999999999997763 67888888888888866643 47888899999
Q ss_pred HHHHHHhhc--CCCCchhHHHHHHHhhcCC--------ChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHh-ccc
Q 002876 116 VAKVAGIEL--PHKQWPELIGALLSNIHQL--------PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ-GMN 184 (872)
Q Consensus 116 l~~i~~~~~--~~~~~~~l~~~l~~~l~~~--------~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~-~l~ 184 (872)
++.++.... | ....+++|.+.+.+.-+ ...+|++|..++-.+....+|..+ ++.+..+.+.++. .+-
T Consensus 404 LAELA~rGlLlp-s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l-~p~l~~L~s~LL~~AlF 481 (1133)
T KOG1943|consen 404 LAELALRGLLLP-SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL-KPVLQSLASALLIVALF 481 (1133)
T ss_pred HHHHHhcCCcch-HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh-hHHHHHHHHHHHHHHhc
Confidence 999997643 3 35568888888877543 347999999999999988877777 6777777776654 444
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhchh---hcc---Chh-----------------------hHHHHHHHHHHh-hcCCCHH
Q 002876 185 ASESNNDVRLAATRALYNALGFAQA---NFS---NDM-----------------------ERDYIMRVVCEA-TLSPEVK 234 (872)
Q Consensus 185 ~~~~~~~vr~~al~~l~~~~~~~~~---~~~---~~~-----------------------~~~~il~~l~~~-~~~~~~~ 234 (872)
|++..+|.+|..++...+...+. +.+ ..+ ++..+++.+..- +..=+..
T Consensus 482 --DrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~ 559 (1133)
T KOG1943|consen 482 --DREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVK 559 (1133)
T ss_pred --CchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHH
Confidence 89999999999999887753221 111 000 001122222211 2334788
Q ss_pred HHHHHHHHHHHHHHHhHHhhHh-hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhH
Q 002876 235 IRQAAFECLVAISSTYYEKLAP-YIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYF 313 (872)
Q Consensus 235 ~r~~~~~~l~~l~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (872)
+|..+..+|..+....|+++.. +++.+++.+ -..+...+....-..+.+.-....+..- ....
T Consensus 560 irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~----ls~~~~~r~g~~la~~ev~~~~~~l~~~------------~~~l 623 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPKYLADYVLPPLLDST----LSKDASMRHGVFLAAGEVIGALRKLEPV------------IKGL 623 (1133)
T ss_pred HHHHHHHHHHHHHHhhHHhhcccchhhhhhhh----cCCChHHhhhhHHHHHHHHHHhhhhhhh------------hhhh
Confidence 8999999999999988888774 445555533 3344445544443333333211000000 0000
Q ss_pred HH---hhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHc----CCcchhchHHHHHhhhcCcchhhhHH
Q 002876 314 IK---HALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV----GDDIVPLVMPFVEENITKQEWRQREA 386 (872)
Q Consensus 314 ~~---~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~----~~~~~~~l~~~l~~~~~~~~~~~r~a 386 (872)
.+ ..++.+++.++..-.+... .--.|.+....+..++..- ++.+.......+.+.+++++ ..|.+
T Consensus 624 ~e~~i~~l~~ii~~~~~~~~~rg~-------~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~ 695 (1133)
T KOG1943|consen 624 DENRIAGLLSIIPPICDRYFYRGQ-------GTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDA 695 (1133)
T ss_pred HHHHhhhhhhhccHHHHHHhccch-------HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHH
Confidence 11 1111222222221111000 0011222222222222111 11222233344556666677 89999
Q ss_pred HHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHh
Q 002876 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQS 466 (872)
Q Consensus 387 al~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 466 (872)
+..+++.++...-... ......++...+..+.+..+.++|.....+++.+.... ....+.+.+...++..
T Consensus 696 av~av~~l~s~y~~~d-~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~---------i~~~~q~~lc~~~l~~ 765 (1133)
T KOG1943|consen 696 AVSAVSDLVSTYVKAD-EGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSEL---------IHRHLQEKLCKLVLEL 765 (1133)
T ss_pred HHHHHHHHHHHHHhcC-chhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHh---------hchHHHHHHHHHHhcc
Confidence 9999998876431111 11112455666666624447788887777777666543 1233344555555554
Q ss_pred cc-C-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCch-----hhhhHHHHHHHHHHHHHccc
Q 002876 467 MK-D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAG-----ESRLRTAAYETLNEVVRCST 539 (872)
Q Consensus 467 l~-d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~-----~~~v~~~~~~~l~~l~~~~~ 539 (872)
.. | .+.-|.....++...++... .......+.++++.+++++.++..+ ..-+|++++.++..+.....
T Consensus 766 ~p~d~~a~aR~~~V~al~~v~~~~~-----~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 766 LPSDAWAEARQQNVKALAHVCKTVT-----SLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHH-----HhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 43 4 56778888889998888764 1233445666677777766554221 24689999999998877765
Q ss_pred cCcHHHH-HHHHHHHHH-HHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002876 540 DETAPMV-MQLVPLIMM-ELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQK 591 (872)
Q Consensus 540 ~~~~~~~-~~l~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 591 (872)
. ++.+ ...+..++. .+.+. -+...++++.++.++..++.-
T Consensus 841 ~--p~~ld~~~i~~~~~~~vqQ~----------veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 841 S--PKLLDEDSINRIIRYFVQQA----------VEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred C--cccccHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHhceeec
Confidence 3 1111 122222222 22222 122335677777777776543
No 43
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3.8e-13 Score=137.09 Aligned_cols=318 Identities=16% Similarity=0.205 Sum_probs=223.0
Q ss_pred hHHHHHhhhc-CcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCC
Q 002876 368 VMPFVEENIT-KQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGST 445 (872)
Q Consensus 368 l~~~l~~~~~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 445 (872)
++|.+.+.+. +.+...+..|.+++..++.+.+ +.-.-.+ ...+|.++.++ .+++..|++.|.|++|+++...+.
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgts-e~T~~vv~agavp~fi~Ll-~s~~~~v~eQavWALgNIagds~~-- 185 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTS-EQTKVVVDAGAVPIFIQLL-SSPSADVREQAVWALGNIAGDSPD-- 185 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCch-hhccccccCCchHHHHHHh-cCCcHHHHHHHHHHHhccccCChH--
Confidence 3444444443 4557889999999999998874 2222222 56788899999 999999999999999999987641
Q ss_pred CCCcccCc-cchHHHHHHHHHhccCCh--hHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhh
Q 002876 446 LETPIINQ-GNCQQIISVLLQSMKDVP--NVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESR 522 (872)
Q Consensus 446 ~~~~~~~~-~~~~~il~~l~~~l~d~~--~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~ 522 (872)
..+ ..-..+++.|+..+..+. .....+.|+|.++|++.. +..-...+..+++.|...+.+. |+.
T Consensus 186 -----~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~-----P~P~~~~v~~iLp~L~~ll~~~---D~~ 252 (514)
T KOG0166|consen 186 -----CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN-----PSPPFDVVAPILPALLRLLHST---DEE 252 (514)
T ss_pred -----HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC-----CCCcHHHHHHHHHHHHHHHhcC---CHH
Confidence 121 112346677777776532 567789999999998742 2222235678889999988776 577
Q ss_pred hHHHHHHHHHHHHHccccCcHHHH-HHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhH
Q 002876 523 LRTAAYETLNEVVRCSTDETAPMV-MQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYV 601 (872)
Q Consensus 523 v~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 601 (872)
+...+++++.++.+...+.+...+ ..++|.+++.+... +. .++..++.+++.+++.-+.. ...+
T Consensus 253 Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~--------~~-----~v~~PaLRaiGNIvtG~d~Q--Tq~v 317 (514)
T KOG0166|consen 253 VLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS--------SP-----KVVTPALRAIGNIVTGSDEQ--TQVV 317 (514)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC--------Cc-----ccccHHHhhccceeeccHHH--HHHH
Confidence 889999999999998887665544 46778888777542 11 23334666676665432211 1000
Q ss_pred hhHhHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHhhhhhHhhhHH-HHHHHHhhhcCCChhhHHHHHHHHHHHHHH
Q 002876 602 FMQYADQMMGLFLRVFA-IRSATAHEEAMLAIGALAYATGQDFLKYMPE-FYKYVEMGLQNFEDYQVCAITVGVVGDLCR 679 (872)
Q Consensus 602 ~~~~~~~i~~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 679 (872)
.....++.+..++. ++...++++|+.+++.|..+..++....++. ++|.|++.++.. +.++|+.|.|+++.+..
T Consensus 318 ---i~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 318 ---INSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTS 393 (514)
T ss_pred ---HhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcc
Confidence 11246677777777 4556699999999999998777777777764 999999999865 47999999999999887
Q ss_pred HHhccccccHH--HHHHHHHHHccCCCCCCCCchhHHHHHHHHHHH
Q 002876 680 ALEDKILPYCD--GIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALA 723 (872)
Q Consensus 680 ~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~ 723 (872)
....+-..|+- .+++.+..+|.-. +..+-..++.+++.|...
T Consensus 394 ~g~~~qi~yLv~~giI~plcdlL~~~--D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 394 SGTPEQIKYLVEQGIIKPLCDLLTCP--DVKIILVALDGLENILKV 437 (514)
T ss_pred cCCHHHHHHHHHcCCchhhhhcccCC--ChHHHHHHHHHHHHHHHH
Confidence 66544444543 3778888888555 444556677777777654
No 44
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=2.7e-07 Score=102.10 Aligned_cols=732 Identities=13% Similarity=0.109 Sum_probs=383.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--------Ch-----hHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccc
Q 002876 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ--------NL-----PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAK 70 (872)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~--------~~-----~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~ 70 (872)
.+..+|.-+.++.+-+|+.|.+.+...-.. +| -.|+..+++-...+. ....-.-.+.+|+..+.
T Consensus 139 ~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a-~~t~v~~~L~Ll~~~~~-- 215 (1176)
T KOG1248|consen 139 ELFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSA-ENTTVLRSLMLLRDVLS-- 215 (1176)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchH-HHHHHHHHHHHHHHhhc--
Confidence 456677777888899999999999887653 11 012222222111111 11111112334444332
Q ss_pred hhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCch-hHHHHHHHhhc----CC-C
Q 002876 71 EQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWP-ELIGALLSNIH----QL-P 144 (872)
Q Consensus 71 ~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~-~l~~~l~~~l~----~~-~ 144 (872)
.+|......+-..++..+...+..++..+-+++..++..--+ ..+ ++.-.++..+. +. +
T Consensus 216 -------------~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~--~l~a~~~a~lL~al~~l~ps~~D 280 (1176)
T KOG1248|consen 216 -------------TFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPT--ALAAELNARLLTALMTLSPSEND 280 (1176)
T ss_pred -------------cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHhCCCccc
Confidence 246667777888899999999999999999999998876522 222 23333333332 22 2
Q ss_pred hhHHHHHHHHHHHhhhh---ccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHH
Q 002876 145 PHTKQATLETLGYICEE---VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIM 221 (872)
Q Consensus 145 ~~~r~~al~~l~~i~~~---~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il 221 (872)
+....+=+.++...... ..++.. ..+.+.+++.++..+. ....++-..+-+++..++.-... . . +.+-
T Consensus 281 ~~~t~~W~~v~~~~~~~la~~q~~~~-~~~~~~~~~~~~t~~~--s~~~e~~q~a~q~l~~il~~sv~-~-~----~~~c 351 (1176)
T KOG1248|consen 281 DLLTVAWLKVLNEAHDILATLQEEKA-LQALPRLFSLFFTILE--SLIEELVQAASQSLKEILKESVT-V-I----DALC 351 (1176)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHH-HHhhhhhhhHHHHHHh--cccHHHHHHHHHHHHHHhcccCc-c-c----HHHH
Confidence 22222222333222211 112222 3567777888877655 56778888888888886643222 0 1 1111
Q ss_pred H-HHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002876 222 R-VVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGG 300 (872)
Q Consensus 222 ~-~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~ 300 (872)
. .+..++.-.-..+-..+++.+..+.+.+++...|++..-++.+...=.+++..-....=+++++-+..
T Consensus 352 ~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~A---------- 421 (1176)
T KOG1248|consen 352 SKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRA---------- 421 (1176)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHh----------
Confidence 1 13333333445666788999999999988877787766555543322222222222111222222111
Q ss_pred CCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHc-CC---cchhchHHHHHh--
Q 002876 301 DFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-GD---DIVPLVMPFVEE-- 374 (872)
Q Consensus 301 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~-~~---~~~~~l~~~l~~-- 374 (872)
+....+-.++|+-+. .+..+..-.|= |=.|-... |. .+...++|+..+
T Consensus 422 ------------mGPe~vL~~lpLnl~------~~s~~~~RsWL--------LPvLR~~i~~A~La~F~~~ivpla~sl~ 475 (1176)
T KOG1248|consen 422 ------------MGPERVLTILPLNLH------AESLSFTRSWL--------LPVLRDYIIGASLAFFTEYIVPLAMSLQ 475 (1176)
T ss_pred ------------hCHHHHHHHcchhcc------ccccccchhHh--------HHHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence 001111111221110 00001111221 11111111 10 011222232211
Q ss_pred --h--hcCcc--hhhhHHHHHHHHHhhCCCC--CCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCC-
Q 002876 375 --N--ITKQE--WRQREAATYAFGSILEGPS--PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGST- 445 (872)
Q Consensus 375 --~--~~~~~--~~~r~aal~~l~~l~~~~~--~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~- 445 (872)
. +.... ...-.+...-+..+..++. |-+....+..+.+.+...+ . ..+..|...|.+|..+.+......
T Consensus 476 ~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al-~-~~~elr~~Ic~sL~~Lv~~n~~~~~ 553 (1176)
T KOG1248|consen 476 LKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAAL-L-KRPELRETICNSLRMLVEQNKPSSD 553 (1176)
T ss_pred HHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHH-h-cchHhHHHHHHHHHHHHHcCCCcch
Confidence 0 11111 1111222222223333221 3445555677778777777 4 445899999999999988652110
Q ss_pred -CCCcccCccchHHHHHHHHHhccC----C-hhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCC-c
Q 002876 446 -LETPIINQGNCQQIISVLLQSMKD----V-PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED-A 518 (872)
Q Consensus 446 -~~~~~~~~~~~~~il~~l~~~l~d----~-~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~-~ 518 (872)
.....+...+-...+|.++..-.. . +..+....+......+.+... +..+..-+.. .+.......+ .
T Consensus 554 a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t---~~dv~~~l~~---s~~e~as~~~~s 627 (1176)
T KOG1248|consen 554 AAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVT---PTDVVGSLKD---SAGELASDLDES 627 (1176)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcc---cHHHHHHHHH---HHHhHhccchhh
Confidence 000112345556677777765542 1 111112211111111111110 1111111111 1111111111 0
Q ss_pred hhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Q 002876 519 GESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQT 598 (872)
Q Consensus 519 ~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 598 (872)
..+......++.+..++.... ...+..++ .+.....+ .++ ..++..+...|..+... ++.
T Consensus 628 ~~~~~~~slLdl~~~~a~~~~---e~~vs~l~-~v~~~~e~--------~~~----~~vQkK~yrlL~~l~~~-~s~--- 687 (1176)
T KOG1248|consen 628 VASFKTLSLLDLLIALAPVQT---ESQVSKLF-TVDPEFEN--------SSS----TKVQKKAYRLLEELSSS-PSG--- 687 (1176)
T ss_pred hhhHHHHHHHHHHHhhhcccc---chhHHHHH-HhhHHhhc--------ccc----HHHHHHHHHHHHHHhcC-Cch---
Confidence 011112222333333333332 22233333 22222211 111 14566677888777665 211
Q ss_pred hhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 002876 599 KYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLC 678 (872)
Q Consensus 599 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 678 (872)
.-...+..+.+++.+...+++.....+...+.+|..+.+.++.....+++..+|-++=.++ +.+...|..++.||-.++
T Consensus 688 ~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~K-e~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 688 EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLK-EVNVKARRNAFALLVFIG 766 (1176)
T ss_pred hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcc-cccHHHHhhHHHHHHHHH
Confidence 1124467788888888888888888999999999999999998788888888887665554 344578899999988887
Q ss_pred --HHHhccc-cc---cHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccch-HHhHHHHHHHHHHHHhhccCCCC
Q 002876 679 --RALEDKI-LP---YCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENF-EKYLMYAMPMLQSAAELSVHTSG 751 (872)
Q Consensus 679 --~~~~~~~-~~---~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~-~~~l~~il~~l~~~l~~~~~~~~ 751 (872)
....+.. .| -+..++..+...+-.+ ...++.+-+.+++.+....+..+ .++++.++..+...+...
T Consensus 767 ~i~~~~d~g~e~~~~~lnefl~~Isagl~gd--~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~----- 839 (1176)
T KOG1248|consen 767 AIQSSLDDGNEPASAILNEFLSIISAGLVGD--STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN----- 839 (1176)
T ss_pred HHHhhhcccccchHHHHHHHHHHHHhhhccc--HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC-----
Confidence 3332211 12 2334444444443333 22333333677777776655443 367888888888877654
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC-c
Q 002876 752 VDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSN-A 830 (872)
Q Consensus 752 ~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~-~ 830 (872)
...++.+++..+..++..+ ....+.+|.+.+++.+...+.+ .+..+|..+-.++..++..+|-+ .
T Consensus 840 --------sreI~kaAI~fikvlv~~~----pe~~l~~~~~~LL~sll~ls~d--~k~~~r~Kvr~LlekLirkfg~~eL 905 (1176)
T KOG1248|consen 840 --------SREIAKAAIGFIKVLVYKF----PEECLSPHLEELLPSLLALSHD--HKIKVRKKVRLLLEKLIRKFGAEEL 905 (1176)
T ss_pred --------CHHHHHHHHHHHHHHHHcC----CHHHHhhhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHhCHHHH
Confidence 2467778888877777763 3356789999999999988775 68899999999999999999954 5
Q ss_pred cccccCchHHHHHHHHHhcC
Q 002876 831 GPLIQQSVSSKDFLNECLSS 850 (872)
Q Consensus 831 ~~~~~~~~~v~~~l~~~~~~ 850 (872)
+.++|. -...+|..+...
T Consensus 906 e~~~pe--e~~klL~nIRK~ 923 (1176)
T KOG1248|consen 906 ESFLPE--EDMKLLTNIRKR 923 (1176)
T ss_pred HhhCHH--HHHHHHHHHHHH
Confidence 566664 356666655433
No 45
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.48 E-value=1.6e-09 Score=118.27 Aligned_cols=556 Identities=14% Similarity=0.123 Sum_probs=349.3
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHH
Q 002876 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (872)
Q Consensus 95 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~ 174 (872)
..+++.+...+-.-|.....-+..++....++..-.+++|.+.+.. +....+...+..-++.+....+. ..+...
T Consensus 85 a~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~----~~~~~~ 159 (759)
T KOG0211|consen 85 AVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGG----PEYAHM 159 (759)
T ss_pred HHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccc----hhHHHH
Confidence 3455555555666677777778888777654334578899999888 55667777777777766655421 334455
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhh
Q 002876 175 ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKL 254 (872)
Q Consensus 175 i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 254 (872)
+.+.+-.... +....+|.+++.++...+...+.. ..+..+...+..+..+.-...|..++..+.......++
T Consensus 160 ll~~le~l~~--~eet~vr~k~ve~l~~v~~~~~~~----~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~-- 231 (759)
T KOG0211|consen 160 LLPPLELLAT--VEETGVREKAVESLLKVAVGLPKE----KLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD-- 231 (759)
T ss_pred hhHHHHhhhH--HHHHHHHHHHHHHHHHHHHhcChH----HHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCCh--
Confidence 5555555544 667789999999999877544322 22355666666665543333455666666654443331
Q ss_pred HhhH-HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhccc
Q 002876 255 APYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQE 333 (872)
Q Consensus 255 ~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 333 (872)
+.+ ..+.+...+..++..+.+|..+..-++.++..... ...-..++|...+...
T Consensus 232 -~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---------------------~~~~s~v~~~~~~L~~--- 286 (759)
T KOG0211|consen 232 -DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---------------------EIVKSEVLPTLIQLLR--- 286 (759)
T ss_pred -HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---------------------HHHHhhccHHHhhhhh---
Confidence 222 35666666777888888888777766666643211 0011112333333222
Q ss_pred CCcccCCccchHhHHHHHHHHHHHHHcCC--cchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHH
Q 002876 334 EDQDQDEGAWNIAMAGGTCLGLVARTVGD--DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIAL 411 (872)
Q Consensus 334 ~d~~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~ 411 (872)
++.-++|.+|.+.+..+...+.. .....+.+.+.+...+.+|++|+.....+..+....++... -+...
T Consensus 287 ------DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~---~~~~~ 357 (759)
T KOG0211|consen 287 ------DDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSAT---RTQLV 357 (759)
T ss_pred ------cchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccC---cccch
Confidence 11238999999999999887743 44556677777888889999999888777777766543111 13445
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhccc
Q 002876 412 NFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFED 490 (872)
Q Consensus 412 ~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~ 490 (872)
+.....+ +|..+.+|.++..-...+......+ .+.......++|.+-....| +.+||...+.....+...++.
T Consensus 358 ~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~~-----~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k 431 (759)
T KOG0211|consen 358 PPVSNLL-KDEEWEVRYAIAKKVQKLACYLNAS-----CYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK 431 (759)
T ss_pred hhHHHHh-cchhhhhhHHhhcchHHHhhhcCcc-----cccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc
Confidence 6677778 9999999999998888888876432 23344455667777777666 578887776655555444321
Q ss_pred CCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccC-cHHHHHHHHHHHHHHHHHHHhhhcCChh
Q 002876 491 AISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQLVPLIMMELHQTLEAQKLSSD 569 (872)
Q Consensus 491 ~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 569 (872)
.. -+..+.+.++..+++. .+.++....+.+..+....+.. ..-+....+|.+.+.- .
T Consensus 432 ----~~----ti~~llp~~~~~l~de---~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~-----------~ 489 (759)
T KOG0211|consen 432 ----ER----TISELLPLLIGNLKDE---DPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA-----------E 489 (759)
T ss_pred ----Cc----CccccChhhhhhcchh---hHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc-----------c
Confidence 12 2233444455555544 5677777776554443333321 2223344555544331 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHH
Q 002876 570 EREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPE 649 (872)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 649 (872)
+. .++++..+++.+-.++..++.. .+.+ ..-+.+...+.+.-.++|+.+...+..++..+|... +...
T Consensus 490 d~--~wRvr~ail~~ip~la~q~~~~-----~~~~---~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w--~~~~ 557 (759)
T KOG0211|consen 490 DL--LWRVRLAILEYIPQLALQLGVE-----FFDE---KLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW--ARLE 557 (759)
T ss_pred ch--hHHHHHHHHHHHHHHHHhhhhH-----HhhH---HHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch--hHHH
Confidence 22 2356666777777776666532 1112 233334444555556799999999999999999443 3556
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchH
Q 002876 650 FYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFE 729 (872)
Q Consensus 650 i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~ 729 (872)
++|.++....+. ++-.|...+.++..++..+|..+. ...+++.+..+..++ ..+||-+++..+..+...+...
T Consensus 558 ~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~--~~~Llp~~~~l~~D~--vanVR~nvak~L~~i~~~L~~~-- 630 (759)
T KOG0211|consen 558 EIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEIT--CEDLLPVFLDLVKDP--VANVRINVAKHLPKILKLLDES-- 630 (759)
T ss_pred hhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHH--HHHHhHHHHHhccCC--chhhhhhHHHHHHHHHhhcchH--
Confidence 777777666543 578899999999999999886553 567888888888888 7899999999999988776543
Q ss_pred HhHHHHHHHHHHHHh
Q 002876 730 KYLMYAMPMLQSAAE 744 (872)
Q Consensus 730 ~~l~~il~~l~~~l~ 744 (872)
..=..+.|.+....+
T Consensus 631 ~~~~~v~pll~~L~~ 645 (759)
T KOG0211|consen 631 VRDEEVLPLLETLSS 645 (759)
T ss_pred HHHHHHHHHHHHhcc
Confidence 223345555544443
No 46
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.42 E-value=3.3e-07 Score=98.12 Aligned_cols=683 Identities=12% Similarity=0.070 Sum_probs=358.5
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCC--ChhHHHHHHHHHHHhhhh-cccc--c-----
Q 002876 97 ILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEE-VSSD--A----- 166 (872)
Q Consensus 97 ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~--~~~~r~~al~~l~~i~~~-~~~~--~----- 166 (872)
++....+++..+|..|...+..+. ..+++...|.+...+. +-..|..|+..+...++. +.+. .
T Consensus 9 ~L~~~ls~d~~vr~~AE~~l~qle-------~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~ 81 (1005)
T KOG2274|consen 9 LLSGSLSADQNVRSQAETQLKQLE-------LTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPL 81 (1005)
T ss_pred HHHhhcCCChhHHHHHHHHHhccc-------cchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCC
Confidence 444556789999998888764433 2234666777766654 346788888777766654 3221 1
Q ss_pred -cchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 002876 167 -VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVA 245 (872)
Q Consensus 167 -l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~ 245 (872)
...+...-|...+.+.+- +++..+|.++..+++.+..+ +-.+.|+.+++.+.+++.+.+......++++|..
T Consensus 82 ~~~e~~K~~IRe~Ll~~l~--~sn~ki~~~vay~is~Ia~~-----D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~e 154 (1005)
T KOG2274|consen 82 IVSEEVKALIREQLLNLLD--DSNSKIRSAVAYAISSIAAV-----DYPDEWPELVPFILKLLSSGNENSIHGAMRVLAE 154 (1005)
T ss_pred cccHHHHHHHHHHHHhhhh--ccccccchHHHHHHHHHHhc-----cCchhhHHHHHHHHHHHhccchhhhhhHHHHHHH
Confidence 111223344455556665 67888999988888887643 2224678999999999988888888889999888
Q ss_pred HHHHhHH-hhHhhHHHHHHHHHHHH---hcCChhhHHHHH--HHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhh
Q 002876 246 ISSTYYE-KLAPYIQDIFNITAKAV---REDEEPVALQAI--EFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALP 319 (872)
Q Consensus 246 l~~~~~~-~~~~~~~~l~~~~~~~~---~~~~~~v~~~a~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (872)
+....-. .+..-.+-.++.+...+ .......+..+. ..+.+..... ..++. ......+.++.
T Consensus 155 l~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li----~~~~e--------~~~~~~~~~~s 222 (1005)
T KOG2274|consen 155 LSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLI----TNVEE--------VWAEHVKVFLS 222 (1005)
T ss_pred HHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHH----hHHHH--------HHHHHHHHHHH
Confidence 7664321 11100111222222221 122223333333 3333322211 11000 00122334444
Q ss_pred hHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHH-------HH--------hhhcC--cch-
Q 002876 320 VLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPF-------VE--------ENITK--QEW- 381 (872)
Q Consensus 320 ~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~-------l~--------~~~~~--~~~- 381 (872)
.+++..++.+...-.- .+-..|..|..-..++..+.+.++...-|.+..+ +. ..... .+.
T Consensus 223 ~~l~~~~~~l~h~l~~--~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~ 300 (1005)
T KOG2274|consen 223 QILNQFMDILEHPLQR--NDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYD 300 (1005)
T ss_pred HHHHHHHHHHhhhhcc--cccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcc
Confidence 4444444433221110 1124478888777888888887765443332221 11 11110 000
Q ss_pred ------hhhHHH----HHHH---HHhhCCCC-CCcchHHHHHHHHHHHHHh----------c-------cCC--cHHHHH
Q 002876 382 ------RQREAA----TYAF---GSILEGPS-PEKLVPLVNIALNFMLTAL----------M-------QDP--NNHVKD 428 (872)
Q Consensus 382 ------~~r~aa----l~~l---~~l~~~~~-~~~~~~~~~~i~~~l~~~l----------~-------~d~--~~~vr~ 428 (872)
..++.. ...+ ..++...- .+.+...++.++..+...+ . .|+ ...+|.
T Consensus 301 ~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~ 380 (1005)
T KOG2274|consen 301 ARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARI 380 (1005)
T ss_pred cccCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhh
Confidence 011111 1111 11111000 0001111111111111111 0 111 123444
Q ss_pred HHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC--------C---hhHHHHHHHHHHHHHHhcccCCCCCCC
Q 002876 429 TTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--------V---PNVAEKACGALYFLAQGFEDAISPSSP 497 (872)
Q Consensus 429 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--------~---~~v~~~a~~al~~l~~~~~~~~~~~~~ 497 (872)
.+...+-.+...++ ...+..+.....+.+.. + .+.+....++...+ + ....
T Consensus 381 ~~rd~~~~v~~~f~----------~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~----~----~~~~ 442 (1005)
T KOG2274|consen 381 SVRDLLLEVITTFG----------NEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESV----R----IDDA 442 (1005)
T ss_pred hHHHHHHHHHHhcc----------chhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhc----c----cCcc
Confidence 44444444444332 12223344443333321 1 12222222222222 1 1333
Q ss_pred CchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHH
Q 002876 498 LTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEI 577 (872)
Q Consensus 498 l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 577 (872)
...++..++..+...+...+ .|.+...++.++..+...... .++.+..++...+..+. .+++. -+
T Consensus 443 ~dd~l~~l~~~~~~~l~~~e--~P~Ll~Ra~~~i~~fs~~~~~-~~~~~~~fl~~~v~~l~---------~~~~~---~~ 507 (1005)
T KOG2274|consen 443 NDDKLIELTIMIDNGLVYQE--SPFLLLRAFLTISKFSSSTVI-NPQLLQHFLNATVNALT---------MDVPP---PV 507 (1005)
T ss_pred hHHHHHHHHHHHHhhccccc--CHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhhc---------cCCCC---ch
Confidence 44566667777777776555 455544777777766655432 12223333333332221 12221 12
Q ss_pred HHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhh
Q 002876 578 QGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMG 657 (872)
Q Consensus 578 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 657 (872)
+..++.++...+ +.. ++.+..+.+++.+.++....+.++.--.+.+|+.+++.-++.-...-..+.|.....
T Consensus 508 ki~a~~~~~~~~---~~~-----vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~l 579 (1005)
T KOG2274|consen 508 KISAVRAFCGYC---KVK-----VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINL 579 (1005)
T ss_pred hHHHHHHHHhcc---Cce-----eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHH
Confidence 223444443332 332 377888999999999888777777777777787777543332222334566766655
Q ss_pred h-cCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCC--CCCCchhHHHHHHHHHHHhccchHH-hHH
Q 002876 658 L-QNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQL--HRSVKPPIFSCFGDIALAIGENFEK-YLM 733 (872)
Q Consensus 658 l-~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~--~~~v~~~~~~~l~~i~~~~~~~~~~-~l~ 733 (872)
+ ...+++.+...+-.++..+++.. ..-.|+....+|.+++.++.+.- +...-..++..+..+.+..++.+.+ .+.
T Consensus 580 F~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~ 658 (1005)
T KOG2274|consen 580 FLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC 658 (1005)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence 3 34556777777778888888744 45678888999999999887631 2334445677777777777766553 567
Q ss_pred HHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhc----ccCCCcccccccchHHHHHHHHHHhcCCCCCH
Q 002876 734 YAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQG----FKGSPKTQLLMPYAPHILQFLDSLYMEKDMDD 809 (872)
Q Consensus 734 ~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 809 (872)
..+|.+.+..-.. +|+ ..-...-+|+.+++.. +.+-.+.+... +-.+++.+.++|+ +..++
T Consensus 659 ~~FpaVak~tlHs-----dD~-------~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~--~~yImqV~sqLLd-p~~sd 723 (1005)
T KOG2274|consen 659 YAFPAVAKITLHS-----DDH-------ETLQNATECLRALISVTLEQLLTWHDEPGHN--LWYIMQVLSQLLD-PETSD 723 (1005)
T ss_pred HHhHHhHhheeec-----CCh-------HHHHhHHHHHHHHHhcCHHHHHhhccCCCcc--HHHHHHHHHHHcC-Cccch
Confidence 7889888876333 122 1222356777777765 22211112121 4467777776665 35566
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 002876 810 VVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAI 866 (872)
Q Consensus 810 ~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 866 (872)
..--.+-.++.+|+.++|.+..+.+++ +....+.++.+-....+-+....+...+
T Consensus 724 s~a~~VG~lV~tLit~a~~el~~n~d~--IL~Avisrmq~ae~lsviQsLi~VfahL 778 (1005)
T KOG2274|consen 724 SAAAFVGPLVLTLITHASSELGPNLDQ--ILRAVISRLQQAETLSVIQSLIMVFAHL 778 (1005)
T ss_pred hHHHHHhHHHHHHHHHHHHHhchhHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 666677778888888889999988887 7888888888776666666655555444
No 47
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.8e-07 Score=99.80 Aligned_cols=640 Identities=14% Similarity=0.118 Sum_probs=336.8
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChh--HHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhc
Q 002876 105 AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPH--TKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQG 182 (872)
Q Consensus 105 ~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~--~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~ 182 (872)
+...|..+|.++++++...-.......++.-++.+-++..++ ...+.+..+..|++..+.+.+ .++....+..+...
T Consensus 188 ~~~~r~~aalllsk~~sR~D~~~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~-l~~~~~~~r~L~~~ 266 (1133)
T KOG1943|consen 188 SGILRRSAALLLSKLFSRTDVKDLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDL-LPYSDTGLRMLSVC 266 (1133)
T ss_pred cchhHHHHHHHHHHHcccccHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhh-HHHhhhhhHhhccc
Confidence 348999999999998854311012233444444443333333 456778888888887643333 35555555555444
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHh--hchhh--------------------c------------cChhh----HHHHHHHH
Q 002876 183 MNASESNNDVRLAATRALYNALG--FAQAN--------------------F------------SNDME----RDYIMRVV 224 (872)
Q Consensus 183 l~~~~~~~~vr~~al~~l~~~~~--~~~~~--------------------~------------~~~~~----~~~il~~l 224 (872)
...++...-+|+.-++++..+-- .-++. + ++.++ ...++..+
T Consensus 267 ~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~L 346 (1133)
T KOG1943|consen 267 RESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHL 346 (1133)
T ss_pred ccccccHhHHHHHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHH
Confidence 33222224566666666663211 00110 0 00011 12456677
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002876 225 CEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRED-EEPVALQAIEFWSSVCDEEIDILEEYGGDFS 303 (872)
Q Consensus 225 ~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~ 303 (872)
...+++.+..+|=.|.+.++.+....|..+. .+++..++..+.-. ++..=+.++-++..++...
T Consensus 347 ls~l~d~dt~VrWSaAKg~grvt~rlp~~La---d~vi~svid~~~p~e~~~aWHgacLaLAELA~rG------------ 411 (1133)
T KOG1943|consen 347 LSALSDTDTVVRWSAAKGLGRVTSRLPPELA---DQVIGSVIDLFNPAEDDSAWHGACLALAELALRG------------ 411 (1133)
T ss_pred HHhccCCcchhhHHHHHHHHHHHccCcHHHH---HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC------------
Confidence 7788899999999999999999998885443 34455555543322 2445556776666666421
Q ss_pred CCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcC-Ccchh---chHH-HHHhhhcC
Q 002876 304 GDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG-DDIVP---LVMP-FVEENITK 378 (872)
Q Consensus 304 ~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~---~l~~-~l~~~~~~ 378 (872)
-.....++.++|++...+.+.+.- ..-...-++|.+|+-.+=.+++.+. ..+-| .+.+ .+...+-|
T Consensus 412 --------lLlps~l~dVvplI~kaL~Yd~~~-G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFD 482 (1133)
T KOG1943|consen 412 --------LLLPSLLEDVVPLILKALHYDVRR-GQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFD 482 (1133)
T ss_pred --------CcchHHHHHHHHHHHHHhhhhhhh-cccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcC
Confidence 122345667888888877653221 0001123788888877777888774 33333 2222 23455678
Q ss_pred cchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHH
Q 002876 379 QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQ 458 (872)
Q Consensus 379 ~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 458 (872)
++-+.|+||..+|....--.+ -.++ -++ ++... +.-.-..|..+...+......+ +.|..+
T Consensus 483 revncRRAAsAAlqE~VGR~~---n~p~---Gi~-Lis~~-dy~sV~~rsNcy~~l~~~ia~~-----------~~y~~~ 543 (1133)
T KOG1943|consen 483 REVNCRRAASAALQENVGRQG---NFPH---GIS-LISTI-DYFSVTNRSNCYLDLCVSIAEF-----------SGYREP 543 (1133)
T ss_pred chhhHhHHHHHHHHHHhccCC---CCCC---chh-hhhhc-chhhhhhhhhHHHHHhHHHHhh-----------hhHHHH
Confidence 888999999988877653321 1111 111 11222 3333344555555555444443 346667
Q ss_pred HHHHHHHh-ccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCc-hhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHH
Q 002876 459 IISVLLQS-MKD-VPNVAEKACGALYFLAQGFEDAISPSSPLT-PFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVV 535 (872)
Q Consensus 459 il~~l~~~-l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~-~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~ 535 (872)
+++.++.. +.- ++.+|.-++++|..+.... ++.+. .+++++++.. ... +...|..++-+.+.++
T Consensus 544 ~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~------pk~~a~~~L~~lld~~----ls~---~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 544 VFNHLLTKKVCHWDVKIRELAAYALHKLSLTE------PKYLADYVLPPLLDST----LSK---DASMRHGVFLAAGEVI 610 (1133)
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHHhh------HHhhcccchhhhhhhh----cCC---ChHHhhhhHHHHHHHH
Confidence 77766654 433 5789999999999987653 22222 3455554433 222 4567777777777776
Q ss_pred HccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHh-HHHHHHHHH
Q 002876 536 RCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQY-ADQMMGLFL 614 (872)
Q Consensus 536 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~-~~~i~~~l~ 614 (872)
...-.-- +.+..+...-+..+.+... .--++............+...+++.+...+. ..+..+ .......+.
T Consensus 611 ~~~~~l~-~~~~~l~e~~i~~l~~ii~----~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~--~~~~~~v~e~~~~ll~ 683 (1133)
T KOG1943|consen 611 GALRKLE-PVIKGLDENRIAGLLSIIP----PICDRYFYRGQGTLMRQATLKFIEQLSLSKD--RLFQDFVIENWQMLLA 683 (1133)
T ss_pred HHhhhhh-hhhhhhHHHHhhhhhhhcc----HHHHHHhccchHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHHHH
Confidence 5543211 1111111111111100000 0001100000000122233334444433210 011112 222333334
Q ss_pred HHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH-HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccc-cHHHH
Q 002876 615 RVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP-EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILP-YCDGI 692 (872)
Q Consensus 615 ~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~-~~~~i 692 (872)
+.+.+++ .+|+.+..+++.++...-.. .++.. .++...+..+.+..+..+|....-.++.+-..+ +.- +-+.+
T Consensus 684 ~~l~~~n-~i~~~av~av~~l~s~y~~~-d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~---i~~~~q~~l 758 (1133)
T KOG1943|consen 684 QNLTLPN-QIRDAAVSAVSDLVSTYVKA-DEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSEL---IHRHLQEKL 758 (1133)
T ss_pred HhhcchH-HHHHHHHHHHHHHHHHHHhc-CchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHh---hchHHHHHH
Confidence 4444455 68899999999998755321 11122 355556666665545455554444444332211 111 12233
Q ss_pred HHHHHHHccCCCCCCCCchhHHHHHHHHHHHhc-cchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHH
Q 002876 693 MTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG-ENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAF 771 (872)
Q Consensus 693 ~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~-~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 771 (872)
...++....... ..+-|...+.++.+++...+ ..+..-.++++..|++++++.....++| --.=||++++.++
T Consensus 759 c~~~l~~~p~d~-~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGD-----VGswVReaAm~al 832 (1133)
T KOG1943|consen 759 CKLVLELLPSDA-WAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGD-----VGSWVREAAMKAL 832 (1133)
T ss_pred HHHHhccCcccc-cHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCcc-----HHHHHHHHHHHHH
Confidence 344444333332 44567778889999888877 3345567778888888887764333333 2345899999998
Q ss_pred HHHhhcccCCCcccccccc-hHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 002876 772 SGIFQGFKGSPKTQLLMPY-APHILQ-FLDSLYMEKDMDDVVTKTAIGVLGDLADT 825 (872)
Q Consensus 772 ~~l~~~~~~~~~~~~~~~~-~~~i~~-~l~~~l~~~~~~~~v~~~a~~~l~~i~~~ 825 (872)
..+...+++ ++.+.+. +..++. ++.+-.+ .-+..|..|..++..|...
T Consensus 833 ~~~~~~l~~---p~~ld~~~i~~~~~~~vqQ~ve---KIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 833 SSLLDTLSS---PKLLDEDSINRIIRYFVQQAVE---KIDRLRELAASALNQIVVH 882 (1133)
T ss_pred HhhhhhhcC---cccccHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHhceeec
Confidence 888877654 2333322 222222 2233322 2345699999999998886
No 48
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=4.4e-09 Score=110.05 Aligned_cols=500 Identities=17% Similarity=0.182 Sum_probs=316.2
Q ss_pred HHHHhcCCC-ChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHH
Q 002876 96 FILKTLSSP-AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (872)
Q Consensus 96 ~ll~~l~~~-~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~ 174 (872)
.|.+.|.+. +...+.+.-.+++.+++. ..-.+++|.+.+...+.+..+++-...-|-..+++- |+.- --
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G----~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq-pdLA-----LL 108 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKG----KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ-PDLA-----LL 108 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcC-CCce-----ee
Confidence 355667666 356666677777777764 367899999999999999998887766665555543 3321 01
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhh
Q 002876 175 ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKL 254 (872)
Q Consensus 175 i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 254 (872)
=+..+.+.+. |+++.+|..|+++++.+=- + ...+.++-.+.++..|+.+.||+.|.-++..+-+..++.
T Consensus 109 SIntfQk~L~--DpN~LiRasALRvlSsIRv--p------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~- 177 (968)
T KOG1060|consen 109 SINTFQKALK--DPNQLIRASALRVLSSIRV--P------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ- 177 (968)
T ss_pred eHHHHHhhhc--CCcHHHHHHHHHHHHhcch--h------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh-
Confidence 1356667788 9999999999999987421 1 112456667778889999999999999998887766543
Q ss_pred HhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccC
Q 002876 255 APYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE 334 (872)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 334 (872)
-.++...+-..+.|..+-|.-.|+-++..+|....+ .+++++..+...+.+
T Consensus 178 ---k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerld-------------------LIHknyrklC~ll~d------- 228 (968)
T KOG1060|consen 178 ---KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLD-------------------LIHKNYRKLCRLLPD------- 228 (968)
T ss_pred ---HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHH-------------------HhhHHHHHHHhhccc-------
Confidence 235666666777888888888888788888765433 334444443333332
Q ss_pred CcccCCccchHhHHHHHHHHHHHHH-cCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 002876 335 DQDQDEGAWNIAMAGGTCLGLVART-VGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNF 413 (872)
Q Consensus 335 d~~~~~~~~~~r~~a~~~l~~l~~~-~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~ 413 (872)
-++|.-- .....|.+.++. +++... ....+..+-.+.+-.... . ..-.+....+.+..++..
T Consensus 229 -----vdeWgQv-vlI~mL~RYAR~~l~~P~~--~~~~~e~n~~~~~~~~~~-------~--~~~~P~~~d~D~~lLL~s 291 (968)
T KOG1060|consen 229 -----VDEWGQV-VLINMLTRYARHQLPDPTV--VDSSLEDNGRSCNLKDKY-------N--EIRTPYVNDPDLKLLLQS 291 (968)
T ss_pred -----hhhhhHH-HHHHHHHHHHHhcCCCccc--cccccccCcccccccccc-------c--ccCCCcccCccHHHHHHh
Confidence 1237532 233444444443 222110 000011111111100000 0 001122334556777777
Q ss_pred HHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHHHhcccCCC
Q 002876 414 MLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAIS 493 (872)
Q Consensus 414 l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~ 493 (872)
...++ ...++.|.-+++.+.-.++... ....+.+.|+..|..+..++......+..++..-
T Consensus 292 tkpLl-~S~n~sVVmA~aql~y~lAP~~-------------~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~----- 352 (968)
T KOG1060|consen 292 TKPLL-QSRNPSVVMAVAQLFYHLAPKN-------------QVTKIAKALVRLLRSNREVQYVVLQNIATISIKR----- 352 (968)
T ss_pred ccHHH-hcCCcHHHHHHHhHHHhhCCHH-------------HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcc-----
Confidence 88888 8889999999888877666543 2347788888888888888888888888887653
Q ss_pred CCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHH
Q 002876 494 PSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREK 573 (872)
Q Consensus 494 ~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 573 (872)
+..+.||+..++ +...+ ...++.-=++.|..++.... + +.++.-+...+. ..|++
T Consensus 353 -~~lF~P~lKsFf------v~ssD--p~~vk~lKleiLs~La~esn------i----~~ILrE~q~YI~-----s~d~~- 407 (968)
T KOG1060|consen 353 -PTLFEPHLKSFF------VRSSD--PTQVKILKLEILSNLANESN------I----SEILRELQTYIK-----SSDRS- 407 (968)
T ss_pred -hhhhhhhhhceE------eecCC--HHHHHHHHHHHHHHHhhhcc------H----HHHHHHHHHHHh-----cCchh-
Confidence 566777766542 11222 23344344566677766543 2 233333444432 22332
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHH
Q 002876 574 QNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKY 653 (872)
Q Consensus 574 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~ 653 (872)
+...+..+|+.++...+ ...+.+++.++.++.+.+..+-.++...+..++..-+..-.. ++..
T Consensus 408 ---faa~aV~AiGrCA~~~~----------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~----ii~~ 470 (968)
T KOG1060|consen 408 ---FAAAAVKAIGRCASRIG----------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE----ILFQ 470 (968)
T ss_pred ---HHHHHHHHHHHHHHhhC----------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH----HHHH
Confidence 33446667777766544 456788999999999999999999999999998766543322 3333
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchH
Q 002876 654 VEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFE 729 (872)
Q Consensus 654 l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~ 729 (872)
+.+.+++-.-+..|...+|++|..+...+ ..+++++..+.+.+.+. ..++|-.++.....+.....+++.
T Consensus 471 La~lldti~vp~ARA~IiWLige~~e~vp----ri~PDVLR~laksFs~E--~~evKlQILnL~aKLyl~~~~~~k 540 (968)
T KOG1060|consen 471 LARLLDTILVPAARAGIIWLIGEYCEIVP----RIAPDVLRKLAKSFSDE--GDEVKLQILNLSAKLYLTNIDQTK 540 (968)
T ss_pred HHHHhhhhhhhhhhceeeeeehhhhhhcc----hhchHHHHHHHHhhccc--cchhhHHHHHhhhhheEechhhHH
Confidence 44444433345678889999999887643 34678899999999888 678888888877776655554433
No 49
>PRK09687 putative lyase; Provisional
Probab=99.36 E-value=1.5e-10 Score=113.92 Aligned_cols=250 Identities=19% Similarity=0.212 Sum_probs=173.7
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhH
Q 002876 179 VVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI 258 (872)
Q Consensus 179 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~ 258 (872)
+...+. |.+..||..|+.+|..+-. ..++..+..+++++++.+|..+...|+.+-..... .
T Consensus 28 L~~~L~--d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 28 LFRLLD--DHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred HHHHHh--CCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 444455 8999999999999986311 35666777778889999999999999986432110 2
Q ss_pred HHHHHHHHHH-HhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcc
Q 002876 259 QDIFNITAKA-VREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQD 337 (872)
Q Consensus 259 ~~l~~~~~~~-~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~ 337 (872)
...++.+... .+++++.||..|+..++.++... ....+.++..+...+.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-----------------------~~~~~~a~~~l~~~~~------- 138 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKN-----------------------PLYSPKIVEQSQITAF------- 138 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-----------------------cccchHHHHHHHHHhh-------
Confidence 3445555544 57788899999999888775321 0011223333333222
Q ss_pred cCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Q 002876 338 QDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA 417 (872)
Q Consensus 338 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~ 417 (872)
+.+|.+|..+..+|+.+. . +..++.+...+.+++|.+|..|..+||.+.... +.+.+.+...
T Consensus 139 --D~~~~VR~~a~~aLg~~~----~---~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~ 200 (280)
T PRK09687 139 --DKSTNVRFAVAFALSVIN----D---EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAM 200 (280)
T ss_pred --CCCHHHHHHHHHHHhccC----C---HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHH
Confidence 124799988888875432 1 446677777788899999999999999882221 4567888899
Q ss_pred hccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHHHhcccCCCCCCC
Q 002876 418 LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSP 497 (872)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~ 497 (872)
+ .|+++.||..|.++||++.. +..+|.|++.++++. ++..++.+|+.+..
T Consensus 201 L-~D~~~~VR~~A~~aLg~~~~-----------------~~av~~Li~~L~~~~-~~~~a~~ALg~ig~----------- 250 (280)
T PRK09687 201 L-QDKNEEIRIEAIIGLALRKD-----------------KRVLSVLIKELKKGT-VGDLIIEAAGELGD----------- 250 (280)
T ss_pred h-cCCChHHHHHHHHHHHccCC-----------------hhHHHHHHHHHcCCc-hHHHHHHHHHhcCC-----------
Confidence 9 99999999999999997543 168888888887643 77788888888732
Q ss_pred CchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHH
Q 002876 498 LTPFFQEIVQALLTVTHREDAGESRLRTAAYETLN 532 (872)
Q Consensus 498 l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~ 532 (872)
+..++.|...+.... +..++..+.+++.
T Consensus 251 -----~~a~p~L~~l~~~~~--d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 -----KTLLPVLDTLLYKFD--DNEIITKAIDKLK 278 (280)
T ss_pred -----HhHHHHHHHHHhhCC--ChhHHHHHHHHHh
Confidence 245666666665333 5678877877765
No 50
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=3.9e-11 Score=113.55 Aligned_cols=428 Identities=14% Similarity=0.109 Sum_probs=267.3
Q ss_pred cchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHH
Q 002876 379 QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQ 458 (872)
Q Consensus 379 ~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 458 (872)
++-.....+..+++.+.+.. +...-.+....++..+ ++..+.++.++..++|+++...... ..-.-+..
T Consensus 59 DnlnlqrsaalafAeitek~----vr~Vsres~epvl~ll-qs~d~~Iq~aa~~alGnlAVn~enk------~liv~l~G 127 (550)
T KOG4224|consen 59 DNLNLQRSAALAFAEITEKG----VRRVSRESNEPVLALL-QSCDKCIQCAAGEALGNLAVNMENK------GLIVSLLG 127 (550)
T ss_pred cccccchHHHHHHHHHHHHH----HHHhhhhhhhHHHHHH-hCcchhhhhhhhhhhccceeccCCc------eEEEeccC
Confidence 34344444555666665432 2222344556677778 8999999999999999988865421 11112223
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHcc
Q 002876 459 IISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCS 538 (872)
Q Consensus 459 il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~ 538 (872)
+=+.+.+.+.|+..||..+..++.++... ++. +..+. .. .-+..+.+ +.+.+ +..++..+..++..+....
T Consensus 128 l~~Li~qmmtd~vevqcnaVgCitnLaT~-d~n---k~kiA-~s-GaL~pltr-Laksk--dirvqrnatgaLlnmThs~ 198 (550)
T KOG4224|consen 128 LDLLILQMMTDGVEVQCNAVGCITNLATF-DSN---KVKIA-RS-GALEPLTR-LAKSK--DIRVQRNATGALLNMTHSR 198 (550)
T ss_pred hHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccc---hhhhh-hc-cchhhhHh-hcccc--hhhHHHHHHHHHHHhhhhh
Confidence 34466677778878888887777777653 111 11111 00 11222233 43433 6778889999988877665
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHh
Q 002876 539 TDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFA 618 (872)
Q Consensus 539 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~ 618 (872)
..+..-....-+|.+++.+.. .|.+ ++-.++.+|+.+.-. ......+.+--+.+++.+.+++.
T Consensus 199 EnRr~LV~aG~lpvLVsll~s---------~d~d----vqyycttaisnIaVd----~~~Rk~Laqaep~lv~~Lv~Lmd 261 (550)
T KOG4224|consen 199 ENRRVLVHAGGLPVLVSLLKS---------GDLD----VQYYCTTAISNIAVD----RRARKILAQAEPKLVPALVDLMD 261 (550)
T ss_pred hhhhhhhccCCchhhhhhhcc---------CChh----HHHHHHHHhhhhhhh----HHHHHHHHhcccchHHHHHHHHh
Confidence 543333334455666666543 3333 333577777766432 11222344556679999999999
Q ss_pred ccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Q 002876 619 IRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLK 698 (872)
Q Consensus 619 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 698 (872)
++++.++..|-.+++.++........-.-..-+|.+++.++++.. ......+.|+..+.-+-..+..-.-..++..|+.
T Consensus 262 ~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~-plilasVaCIrnisihplNe~lI~dagfl~pLVr 340 (550)
T KOG4224|consen 262 DGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMG-PLILASVACIRNISIHPLNEVLIADAGFLRPLVR 340 (550)
T ss_pred CCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcch-hHHHHHHHHHhhcccccCcccceecccchhHHHH
Confidence 999999999999999998655443332333478999999987654 3444556677666544333222222347778888
Q ss_pred HccCCCCCCCCchhHHHHHHHHHHHhccchHHhHH-HHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhc
Q 002876 699 DLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLM-YAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQG 777 (872)
Q Consensus 699 ~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~-~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~ 777 (872)
++.... +.+++..+..++-+++.+.......+.+ .-+|.+...+-+. .-.+|..+-.|+..+...
T Consensus 341 lL~~~d-nEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-------------pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 341 LLRAGD-NEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-------------PVSVQSEISACIAQLALN 406 (550)
T ss_pred HHhcCC-chhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-------------ChhHHHHHHHHHHHHHhc
Confidence 888775 5669999999999999877665554443 3566666665443 134555555555554432
Q ss_pred ccCCCcccccccchH--HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccc----ccCchHHHHHHHHHhcCC
Q 002876 778 FKGSPKTQLLMPYAP--HILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPL----IQQSVSSKDFLNECLSSD 851 (872)
Q Consensus 778 ~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~----~~~~~~v~~~l~~~~~~~ 851 (872)
+..+.++. .+++.++..+.+ .+.++|..+..++++++... +.+..+ =.+.+-+...|.+...+.
T Consensus 407 -------d~~k~~lld~gi~~iLIp~t~s--~s~Ev~gNaAaAL~Nlss~v-~~YarviEawd~P~~gi~g~L~Rfl~S~ 476 (550)
T KOG4224|consen 407 -------DNDKEALLDSGIIPILIPWTGS--ESEEVRGNAAAALINLSSDV-EHYARVIEAWDHPVQGIQGRLARFLASH 476 (550)
T ss_pred -------cccHHHHhhcCCcceeecccCc--cchhhcccHHHHHHhhhhhh-HHHHHHHHHhcCcchhHHHHHHHHHhhh
Confidence 33344433 477888888774 68999999999999887654 222222 111123777888888888
Q ss_pred ChhHHHHHHHHHHHHHH
Q 002876 852 DHMIKESAEWAKLAISK 868 (872)
Q Consensus 852 ~~~~~~~~~~~~~~~~~ 868 (872)
+-.+++.+.|+..++-+
T Consensus 477 ~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 477 ELTFRHIARWTIQQLLE 493 (550)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998865
No 51
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.28 E-value=4.8e-10 Score=130.63 Aligned_cols=271 Identities=18% Similarity=0.189 Sum_probs=193.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHH
Q 002876 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (872)
Q Consensus 95 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~ 174 (872)
+.|+..|.|+++.||..++..|+.+. -++.++.|...+.++++.+|..|+..|..+.+.. +. .
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-~~------~-- 686 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-PP------A-- 686 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-Cc------h--
Confidence 56778899999999999999997654 1457888889999999999999999998775432 11 1
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhh
Q 002876 175 ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKL 254 (872)
Q Consensus 175 i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 254 (872)
+.+...+. ++++.||..|+.+|..+-. . . ...+...+.++++.+|..++..|..+-.
T Consensus 687 --~~L~~~L~--~~d~~VR~~A~~aL~~~~~------~---~----~~~l~~~L~D~d~~VR~~Av~aL~~~~~------ 743 (897)
T PRK13800 687 --PALRDHLG--SPDPVVRAAALDVLRALRA------G---D----AALFAAALGDPDHRVRIEAVRALVSVDD------ 743 (897)
T ss_pred --HHHHHHhc--CCCHHHHHHHHHHHHhhcc------C---C----HHHHHHHhcCCCHHHHHHHHHHHhcccC------
Confidence 24445556 6889999999999887321 0 0 1234557789999999999999987421
Q ss_pred HhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccC
Q 002876 255 APYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE 334 (872)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 334 (872)
.+.+...+.|++.++|..+.+.+..+.... .. .++.+...+.+
T Consensus 744 -------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-----------------------~~----~~~~L~~ll~D--- 786 (897)
T PRK13800 744 -------VESVAGAATDENREVRIAVAKGLATLGAGG-----------------------AP----AGDAVRALTGD--- 786 (897)
T ss_pred -------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc-----------------------ch----hHHHHHHHhcC---
Confidence 012345678999999999998887765421 00 12334443321
Q ss_pred CcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHH
Q 002876 335 DQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFM 414 (872)
Q Consensus 335 d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l 414 (872)
.++.+|..|..+|..+.. . +.+.+.+...+.|++|.+|.+|+.+|+.+.. +..++.+
T Consensus 787 ------~d~~VR~aA~~aLg~~g~---~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L 843 (897)
T PRK13800 787 ------PDPLVRAAALAALAELGC---P---PDDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPAL 843 (897)
T ss_pred ------CCHHHHHHHHHHHHhcCC---c---chhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHH
Confidence 125788877777765522 1 2233456677888999999999999987642 2235778
Q ss_pred HHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHH
Q 002876 415 LTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALY 482 (872)
Q Consensus 415 ~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~ 482 (872)
...+ +|+++.||..|.++|+.+.. . +...+.|...++| ++.||..|..+|.
T Consensus 844 ~~~L-~D~~~~VR~~A~~aL~~~~~-~---------------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 844 VEAL-TDPHLDVRKAAVLALTRWPG-D---------------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHh-cCCCHHHHHHHHHHHhccCC-C---------------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 8889 99999999999999998611 1 1456667777776 6899999998875
No 52
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=5.3e-08 Score=102.19 Aligned_cols=441 Identities=13% Similarity=0.133 Sum_probs=277.6
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHh
Q 002876 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE 297 (872)
Q Consensus 218 ~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~ 297 (872)
..+++.+.+.....+.++|+-+.-.|...++..|..-. --+..+...+.|++..+|..|+..+.++=
T Consensus 70 S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----LSIntfQk~L~DpN~LiRasALRvlSsIR--------- 136 (968)
T KOG1060|consen 70 SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----LSINTFQKALKDPNQLIRASALRVLSSIR--------- 136 (968)
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----eeHHHHHhhhcCCcHHHHHHHHHHHHhcc---------
Confidence 45677777777778999999999999888876654210 12456667889999999999998877652
Q ss_pred cCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhc
Q 002876 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT 377 (872)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~ 377 (872)
++.+.|+++-.+.+---| -.--+|+.|+.++-.+-..-++ --+.+...+...+.
T Consensus 137 --------------------vp~IaPI~llAIk~~~~D-----~s~yVRk~AA~AIpKLYsLd~e-~k~qL~e~I~~LLa 190 (968)
T KOG1060|consen 137 --------------------VPMIAPIMLLAIKKAVTD-----PSPYVRKTAAHAIPKLYSLDPE-QKDQLEEVIKKLLA 190 (968)
T ss_pred --------------------hhhHHHHHHHHHHHHhcC-----CcHHHHHHHHHhhHHHhcCChh-hHHHHHHHHHHHhc
Confidence 223455555544432222 1237899998888777654333 33477888888899
Q ss_pred CcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhc-cCCCC----------
Q 002876 378 KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL-HGSTL---------- 446 (872)
Q Consensus 378 ~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~-~~~~~---------- 446 (872)
|..+.+--+|++++..++..- -+-+.++.. .+.+.+ -|-+.-=+.-....|.+++++. +.+..
T Consensus 191 D~splVvgsAv~AF~evCPer-ldLIHknyr----klC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~ 264 (968)
T KOG1060|consen 191 DRSPLVVGSAVMAFEEVCPER-LDLIHKNYR----KLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGR 264 (968)
T ss_pred CCCCcchhHHHHHHHHhchhH-HHHhhHHHH----HHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcc
Confidence 999999999999998877543 122233322 233334 3333222333445555555542 11100
Q ss_pred -----------CCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhc
Q 002876 447 -----------ETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTH 514 (872)
Q Consensus 447 -----------~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~ 514 (872)
..|+....-+.-+++..-..+.. ++.|.-+++.++..++. +. ....|...|+..+.
T Consensus 265 ~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP--------~~----~~~~i~kaLvrLLr 332 (968)
T KOG1060|consen 265 SCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP--------KN----QVTKIAKALVRLLR 332 (968)
T ss_pred cccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC--------HH----HHHHHHHHHHHHHh
Confidence 01222334444555555555554 68887778777776642 22 34567778888776
Q ss_pred cCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 002876 515 REDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGS 594 (872)
Q Consensus 515 ~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 594 (872)
. ++.++...+..+..+....+.-|.||+..++-. ..|+..... .=++.|+.+++.-
T Consensus 333 s----~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~---------------ssDp~~vk~---lKleiLs~La~es-- 388 (968)
T KOG1060|consen 333 S----NREVQYVVLQNIATISIKRPTLFEPHLKSFFVR---------------SSDPTQVKI---LKLEILSNLANES-- 388 (968)
T ss_pred c----CCcchhhhHHHHHHHHhcchhhhhhhhhceEee---------------cCCHHHHHH---HHHHHHHHHhhhc--
Confidence 6 455778889999999988887777776654422 233332211 1244555555432
Q ss_pred CcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002876 595 SEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVV 674 (872)
Q Consensus 595 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l 674 (872)
....|+..+.....+.+..+-..++.++|+++...+.- -+.++..|+..++++++ .|...++..+
T Consensus 389 ----------ni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv----~~tCL~gLv~Llsshde-~Vv~eaV~vI 453 (968)
T KOG1060|consen 389 ----------NISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSV----TDTCLNGLVQLLSSHDE-LVVAEAVVVI 453 (968)
T ss_pred ----------cHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCch----hhHHHHHHHHHHhcccc-hhHHHHHHHH
Confidence 35567788888888877778888899999999877653 45677777777777654 6777888888
Q ss_pred HHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCc
Q 002876 675 GDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDD 754 (872)
Q Consensus 675 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~ 754 (872)
..+++.-+..- ..++..|.+.+.+-. -+..|..++|.+|..+...+ ...+.++..+.+.+.+. .
T Consensus 454 k~Llq~~p~~h----~~ii~~La~lldti~-vp~ARA~IiWLige~~e~vp----ri~PDVLR~laksFs~E------~- 517 (968)
T KOG1060|consen 454 KRLLQKDPAEH----LEILFQLARLLDTIL-VPAARAGIIWLIGEYCEIVP----RIAPDVLRKLAKSFSDE------G- 517 (968)
T ss_pred HHHHhhChHHH----HHHHHHHHHHhhhhh-hhhhhceeeeeehhhhhhcc----hhchHHHHHHHHhhccc------c-
Confidence 88887655322 246666667665544 35678889999999887643 33455555555555433 1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhh
Q 002876 755 DMTEYTNSLRNGILEAFSGIFQ 776 (872)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~l~~ 776 (872)
..+|-++++....+..
T Consensus 518 ------~evKlQILnL~aKLyl 533 (968)
T KOG1060|consen 518 ------DEVKLQILNLSAKLYL 533 (968)
T ss_pred ------chhhHHHHHhhhhheE
Confidence 2456667766666554
No 53
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.26 E-value=9.2e-11 Score=110.01 Aligned_cols=341 Identities=13% Similarity=0.147 Sum_probs=218.3
Q ss_pred HHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCC
Q 002876 370 PFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET 448 (872)
Q Consensus 370 ~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 448 (872)
|.+.+.+.+.+-.....|..-|..+...-....+.+.+ ..++|.++..+.+.++...+..|+|++.+++......
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q---- 149 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ---- 149 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc----
Confidence 66667777777777777777777766543333344444 4567778777744556678889999999999865321
Q ss_pred cccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHH--HHHHHHHHhhccCCchhhhhHH
Q 002876 449 PIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ--EIVQALLTVTHREDAGESRLRT 525 (872)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~--~i~~~l~~~l~~~~~~~~~v~~ 525 (872)
..-..-...+|.+++.|.+ +..|++.+.|+|+++.-.. .....|.- ..++.++..+.+... +-++..
T Consensus 150 --TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS-------~~~RD~vL~~galeplL~ll~ss~~-~ismlR 219 (526)
T COG5064 150 --TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDS-------EGCRDYVLQCGALEPLLGLLLSSAI-HISMLR 219 (526)
T ss_pred --eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCc-------hhHHHHHHhcCchHHHHHHHHhccc-hHHHHH
Confidence 1111223578888888886 6899999999999996432 12222221 234444555444332 334555
Q ss_pred HHHHHHHHHHHcccc-CcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhH
Q 002876 526 AAYETLNEVVRCSTD-ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQ 604 (872)
Q Consensus 526 ~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~ 604 (872)
.+-+.|+.+.+.-.. .....+...+|.+.+.+.. .|++ +...+|.+|+.+...-. +.+..
T Consensus 220 n~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys---------~D~e----vlvDA~WAiSYlsDg~~------E~i~a 280 (526)
T COG5064 220 NATWTLSNLCRGKNPPPDWSNISQALPILAKLIYS---------RDPE----VLVDACWAISYLSDGPN------EKIQA 280 (526)
T ss_pred HhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhh---------cCHH----HHHHHHHHHHHhccCcH------HHHHH
Confidence 888999998876542 2333456666666665543 3333 23358888888754221 22333
Q ss_pred hHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH-HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHh
Q 002876 605 YAD-QMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP-EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALE 682 (872)
Q Consensus 605 ~~~-~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 682 (872)
.++ .+...++++|.+++..+...++..+|.++.....+-.-.+. .+++.+...|+++.+ .+|+.++|.++.+...-.
T Consensus 281 vld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke-~irKEaCWTiSNITAGnt 359 (526)
T COG5064 281 VLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE-NIRKEACWTISNITAGNT 359 (526)
T ss_pred HHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh-hhhhhhheeecccccCCH
Confidence 333 46788999999999999999999999998765543322222 256666666776665 899999999998865544
Q ss_pred ccccccHH-HHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhc--cchHHhHH--HHHHHHHHHHhhc
Q 002876 683 DKILPYCD-GIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG--ENFEKYLM--YAMPMLQSAAELS 746 (872)
Q Consensus 683 ~~~~~~~~-~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~--~~~~~~l~--~il~~l~~~l~~~ 746 (872)
+++...++ +++|.|+.+++.. +-.+|..++|++.......- ++...|+- .++..|...+...
T Consensus 360 eqiqavid~nliPpLi~lls~a--e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~ 426 (526)
T COG5064 360 EQIQAVIDANLIPPLIHLLSSA--EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV 426 (526)
T ss_pred HHHHHHHhcccchHHHHHHHHH--HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhcc
Confidence 44444333 5788888888877 56788999999998765321 23333432 2455666655443
No 54
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.23 E-value=2.5e-09 Score=124.75 Aligned_cols=275 Identities=19% Similarity=0.208 Sum_probs=195.1
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 002876 38 FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVA 117 (872)
Q Consensus 38 ~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~ 117 (872)
-...|...|.+ .++.+|+.|+..|...-. + ...+.|.+.|.|++..||..++.+++
T Consensus 622 ~~~~L~~~L~D--~d~~VR~~Av~~L~~~~~------------------~----~~~~~L~~aL~D~d~~VR~~Aa~aL~ 677 (897)
T PRK13800 622 SVAELAPYLAD--PDPGVRRTAVAVLTETTP------------------P----GFGPALVAALGDGAAAVRRAAAEGLR 677 (897)
T ss_pred hHHHHHHHhcC--CCHHHHHHHHHHHhhhcc------------------h----hHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45566677764 489999999999876332 2 24557888899999999999999998
Q ss_pred HHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHH
Q 002876 118 KVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAAT 197 (872)
Q Consensus 118 ~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al 197 (872)
.+.... + . .+.+...+.++++.+|..++..|..+-.. .. ..+...+. |+++.||..|+
T Consensus 678 ~l~~~~-~-----~-~~~L~~~L~~~d~~VR~~A~~aL~~~~~~---------~~----~~l~~~L~--D~d~~VR~~Av 735 (897)
T PRK13800 678 ELVEVL-P-----P-APALRDHLGSPDPVVRAAALDVLRALRAG---------DA----ALFAAALG--DPDHRVRIEAV 735 (897)
T ss_pred HHHhcc-C-----c-hHHHHHHhcCCCHHHHHHHHHHHHhhccC---------CH----HHHHHHhc--CCCHHHHHHHH
Confidence 885322 1 1 24566777888999999999999765211 11 13445566 89999999999
Q ss_pred HHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhH
Q 002876 198 RALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVA 277 (872)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~ 277 (872)
.+|..+- . .+.+..++.|+++.+|..+...|..+-...+ ..++.+...+.|+++.+|
T Consensus 736 ~aL~~~~--------~-------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR 792 (897)
T PRK13800 736 RALVSVD--------D-------VESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVR 792 (897)
T ss_pred HHHhccc--------C-------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHH
Confidence 9999731 0 0224456889999999999999988654322 124455567788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHH
Q 002876 278 LQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVA 357 (872)
Q Consensus 278 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~ 357 (872)
..|+..+..+.... .+.+.+...+. +++|.+|..|..+|..+.
T Consensus 793 ~aA~~aLg~~g~~~----------------------------~~~~~l~~aL~---------d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 793 AAALAALAELGCPP----------------------------DDVAAATAALR---------ASAWQVRQGAARALAGAA 835 (897)
T ss_pred HHHHHHHHhcCCcc----------------------------hhHHHHHHHhc---------CCChHHHHHHHHHHHhcc
Confidence 99998877664310 11122333332 133899999888887653
Q ss_pred HHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 002876 358 RTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGR 436 (872)
Q Consensus 358 ~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~ 436 (872)
. +...+.+...+.|++|.+|.++..+|+.+. +. +...+.+...+ +|+++.||..|..+|..
T Consensus 836 ~-------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~---------~~a~~~L~~al-~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 836 A-------DVAVPALVEALTDPHLDVRKAAVLALTRWP-GD---------PAARDALTTAL-TDSDADVRAYARRALAH 896 (897)
T ss_pred c-------cchHHHHHHHhcCCCHHHHHHHHHHHhccC-CC---------HHHHHHHHHHH-hCCCHHHHHHHHHHHhh
Confidence 2 234466777778999999999999998861 11 34466777888 99999999999998863
No 55
>PRK09687 putative lyase; Provisional
Probab=99.20 E-value=6.7e-09 Score=102.33 Aligned_cols=225 Identities=15% Similarity=0.112 Sum_probs=164.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccC
Q 002876 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (872)
Q Consensus 5 l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (872)
+..++..+.++|..+|..|...|.++.. +..+..+...+.+ .++.+|..|+..|...-...
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~---~~~~~~l~~ll~~--~d~~vR~~A~~aLg~lg~~~-------------- 85 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG---QDVFRLAIELCSS--KNPIERDIGADILSQLGMAK-------------- 85 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc---chHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCc--------------
Confidence 4456667788999999999999998865 5666667676554 48999999999998854311
Q ss_pred CChHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc
Q 002876 85 LDSSVKAQIKSFILKT-LSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS 163 (872)
Q Consensus 85 l~~~~~~~i~~~ll~~-l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~ 163 (872)
.......+.|... +.++++.||..++.+++.+.... + ...+.+++.+...+.++++.+|..+...|+.+-.
T Consensus 86 ---~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-~-~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--- 157 (280)
T PRK09687 86 ---RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKN-P-LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--- 157 (280)
T ss_pred ---cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-c-ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---
Confidence 0122334445555 67789999999999999986433 1 2347788888888899999999999999965421
Q ss_pred ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 002876 164 SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECL 243 (872)
Q Consensus 164 ~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l 243 (872)
+..++.|+..+. |+++.||..|+.+|+.+- .. .+...+.+...+.|+++++|..+...|
T Consensus 158 ---------~~ai~~L~~~L~--d~~~~VR~~A~~aLg~~~------~~----~~~~~~~L~~~L~D~~~~VR~~A~~aL 216 (280)
T PRK09687 158 ---------EAAIPLLINLLK--DPNGDVRNWAAFALNSNK------YD----NPDIREAFVAMLQDKNEEIRIEAIIGL 216 (280)
T ss_pred ---------HHHHHHHHHHhc--CCCHHHHHHHHHHHhcCC------CC----CHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 334567777777 889999999999999851 11 135677788888999999999999999
Q ss_pred HHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 002876 244 VAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (872)
Q Consensus 244 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (872)
..+-. +..++.++..+++.+ ++..+++.++.+..
T Consensus 217 g~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 217 ALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred HccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 87322 245666666667644 67777777776654
No 56
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=2.1e-05 Score=89.40 Aligned_cols=187 Identities=18% Similarity=0.262 Sum_probs=131.6
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 4 EVTQILLNAQSV--DGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 4 ~l~~~l~~~~s~--~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
++..++....++ ++..|.+|.+.+.+++.. ++-|.....++.. +..+.+|++|..+|.+.++. .
T Consensus 11 ~lldavv~~~~~~~s~~~r~eA~~~l~~lke~--~~~~~~~~~iL~~-s~~~~~k~f~Lqlle~vik~-----------~ 76 (1041)
T KOG2020|consen 11 ELLDAVVVTLNPEGSNEERGEAQQILEELKEE--PDSWLQVYLILKL-STNPILKYFALQLLENVIKF-----------R 76 (1041)
T ss_pred HHHHhHHHHhCcccchHHHHHHHHHHHHHHhC--cchHHHHHHHHhc-cCCchhheeeHHHHHHHHHH-----------h
Confidence 344555555554 678999999999999988 7777767777776 56899999999999999974 5
Q ss_pred ccCCChHHHHHHHHHHHHhcCC----C-----ChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHH
Q 002876 82 WLSLDSSVKAQIKSFILKTLSS----P-----AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATL 152 (872)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~----~-----~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al 152 (872)
|..+|.+.+..+|+.++..... + ...++.+++..+..+++.++| ..||++++.+.+.... ++..++.++
T Consensus 77 W~~~~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp-~~wp~~i~dl~~~s~~-s~~~~el~m 154 (1041)
T KOG2020|consen 77 WNSLPVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWP-AIWPTFIPDLAQSSKT-SETVCELSM 154 (1041)
T ss_pred cccCCccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHH-hhcchhhhhHHHHhhc-CcccchHHH
Confidence 6678888888888888877442 1 235788999999999999999 7999999999998874 456677777
Q ss_pred HHHHHhhhhcc---ccccc-----------hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhch
Q 002876 153 ETLGYICEEVS---SDAVE-----------QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (872)
Q Consensus 153 ~~l~~i~~~~~---~~~l~-----------~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (872)
.++..+.+++- ...+. ...+..+...+..... ..+.++-.+++..+..++.+++
T Consensus 155 ~Il~lLsEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~--~a~~~~~~atl~tl~~fl~wip 222 (1041)
T KOG2020|consen 155 IILLLLSEEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKE--KANSELLSATLETLLRFLEWIP 222 (1041)
T ss_pred HHHHHHHHHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHhhccc
Confidence 77777766641 11110 0122333333333222 1222366777777777766655
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=4.5e-06 Score=88.67 Aligned_cols=434 Identities=13% Similarity=0.148 Sum_probs=253.0
Q ss_pred HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhH
Q 002876 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (872)
Q Consensus 172 ~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 251 (872)
+--+...+.+-++ +.+.-+...|+-+++.++. .+....+.+-+.++++.+++.+|+.|..|...++...|
T Consensus 105 llLltNslknDL~--s~nq~vVglAL~alg~i~s--------~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P 174 (866)
T KOG1062|consen 105 LLLLTNSLKNDLN--SSNQYVVGLALCALGNICS--------PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP 174 (866)
T ss_pred HHHHHHHHHhhcc--CCCeeehHHHHHHhhccCC--------HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc
Confidence 4445566677777 7788888999999988542 12235677777888888999999999999999999888
Q ss_pred HhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhc
Q 002876 252 EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLK 331 (872)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~ 331 (872)
+.+.. +++.....+.+.+..|-..++.++..+|+..++.. .+++...+.++..|-+....
T Consensus 175 ~l~e~----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l----------------~~fr~l~~~lV~iLk~l~~~ 234 (866)
T KOG1062|consen 175 DLVEH----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL----------------SYFRDLVPSLVKILKQLTNS 234 (866)
T ss_pred hHHHH----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH----------------HHHHHHHHHHHHHHHHHhcC
Confidence 75544 34445556667777788888888888887543222 34455555555555443321
Q ss_pred ccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCC--CCcchHHHHH
Q 002876 332 QEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS--PEKLVPLVNI 409 (872)
Q Consensus 332 ~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~--~~~~~~~~~~ 409 (872)
. -.++ +++.. .++.++..-+-.+...+...+....+.....|+.++..+. +......+-+
T Consensus 235 ~-yspe-----ydv~g------------i~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE 296 (866)
T KOG1062|consen 235 G-YSPE-----YDVHG------------ISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYE 296 (866)
T ss_pred C-CCCc-----cCccC------------CCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence 1 1111 11100 0111111111111122333345566666777777776542 1122233344
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhc
Q 002876 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGF 488 (872)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
.+..+.. -.+++..|..|..++|++...-. .+..| -.+..|.+.++. ...|+.
T Consensus 297 ~V~TI~~---I~~~~~LrvlainiLgkFL~n~d--------~NirY--vaLn~L~r~V~~d~~avqr------------- 350 (866)
T KOG1062|consen 297 CVRTIMD---IRSNSGLRVLAINILGKFLLNRD--------NNIRY--VALNMLLRVVQQDPTAVQR------------- 350 (866)
T ss_pred HHHHHHh---ccCCchHHHHHHHHHHHHhcCCc--------cceee--eehhhHHhhhcCCcHHHHH-------------
Confidence 4444444 34788899999999998887532 11111 123333344432 222222
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCCh
Q 002876 489 EDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSS 568 (872)
Q Consensus 489 ~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 568 (872)
|-. .++.+++++ +..+|..+++.+..++.... +..++..+++.+...
T Consensus 351 ------------Hr~----tIleCL~Dp---D~SIkrralELs~~lvn~~N------v~~mv~eLl~fL~~~-------- 397 (866)
T KOG1062|consen 351 ------------HRS----TILECLKDP---DVSIKRRALELSYALVNESN------VRVMVKELLEFLESS-------- 397 (866)
T ss_pred ------------HHH----HHHHHhcCC---cHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHhc--------
Confidence 222 235566666 57789899998888877654 345566666666542
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH
Q 002876 569 DEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP 648 (872)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 648 (872)
|. +++..+..-+..+++++.++ -...++.++..|......++..+...+-.++.........|-.
T Consensus 398 -d~----~~k~~~as~I~~laEkfaP~----------k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~ 462 (866)
T KOG1062|consen 398 -DE----DFKADIASKIAELAEKFAPD----------KRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAV 462 (866)
T ss_pred -cH----HHHHHHHHHHHHHHHhcCCc----------chhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHH
Confidence 11 23344555555666665443 4456677778888887888888888888777655232222221
Q ss_pred -HHHHHHHhh-hcCCChhhHHHHHHHHHHHHHHHHhc-----c-ccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHH
Q 002876 649 -EFYKYVEMG-LQNFEDYQVCAITVGVVGDLCRALED-----K-ILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI 720 (872)
Q Consensus 649 -~i~~~l~~~-l~~~~~~~v~~~a~~~l~~l~~~~~~-----~-~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i 720 (872)
.+.-.+... +...+.....+.+.||+|.+..-+-. + ...--..++..+.+.+.+...+..+|..++.++-.+
T Consensus 463 ~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KL 542 (866)
T KOG1062|consen 463 LRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKL 542 (866)
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 122222211 11223335678899999998854421 1 122234677777777766655566778888888887
Q ss_pred HHHhccc
Q 002876 721 ALAIGEN 727 (872)
Q Consensus 721 ~~~~~~~ 727 (872)
....+..
T Consensus 543 Ssr~~s~ 549 (866)
T KOG1062|consen 543 SSRFHSS 549 (866)
T ss_pred Hhhcccc
Confidence 7766654
No 58
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.18 E-value=5.5e-10 Score=104.92 Aligned_cols=322 Identities=14% Similarity=0.176 Sum_probs=201.4
Q ss_pred chhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 002876 364 IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (872)
Q Consensus 364 ~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
++|.++.++.+. ..--.+..|.+++..++.+.+. ...-.+ ...+|.+++.| .+++..||+.+.|+||+++....
T Consensus 115 vVpRfvefm~~~---q~~mlqfEAaWalTNiaSGtt~-QTkvVvd~~AVPlfiqlL-~s~~~~V~eQavWALGNiAGDS~ 189 (526)
T COG5064 115 VVPRFVEFMDEI---QRDMLQFEAAWALTNIASGTTQ-QTKVVVDAGAVPLFIQLL-SSTEDDVREQAVWALGNIAGDSE 189 (526)
T ss_pred ccHHHHHHHHhc---chhHHHHHHHHHHhhhccCccc-ceEEEEeCCchHHHHHHH-cCchHHHHHHHHHHhccccCCch
Confidence 455555555432 2223455678899999988742 211111 45688999999 99999999999999999988643
Q ss_pred CCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhh
Q 002876 443 GSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESR 522 (872)
Q Consensus 443 ~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~ 522 (872)
.... -......+++++..+.+.- .+-....++.|.|+++|+.-. +.---..+.+.++.|.+.+-.. ++.
T Consensus 190 ~~RD--~vL~~galeplL~ll~ss~-~~ismlRn~TWtLSNlcRGkn-----P~P~w~~isqalpiL~KLiys~---D~e 258 (526)
T COG5064 190 GCRD--YVLQCGALEPLLGLLLSSA-IHISMLRNATWTLSNLCRGKN-----PPPDWSNISQALPILAKLIYSR---DPE 258 (526)
T ss_pred hHHH--HHHhcCchHHHHHHHHhcc-chHHHHHHhHHHHHHhhCCCC-----CCCchHHHHHHHHHHHHHHhhc---CHH
Confidence 1000 0011223334443333110 123566788999999998632 2222234566777777777655 567
Q ss_pred hHHHHHHHHHHHHHccccCcHHHHH-HHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhH
Q 002876 523 LRTAAYETLNEVVRCSTDETAPMVM-QLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYV 601 (872)
Q Consensus 523 v~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 601 (872)
+...++++++.+.+...+.....++ .+.+.+++.+... +. .++.-++..++.+++.-... ..-
T Consensus 259 vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~--------sa-----~iqtPalR~vGNIVTG~D~Q--Tqv- 322 (526)
T COG5064 259 VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE--------SA-----KIQTPALRSVGNIVTGSDDQ--TQV- 322 (526)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc--------cc-----cccCHHHHhhcCeeecCccc--eeh-
Confidence 7789999999998877655444432 3445566555331 11 23445666666666543221 100
Q ss_pred hhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH-HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Q 002876 602 FMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP-EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRA 680 (872)
Q Consensus 602 ~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 680 (872)
+ .--..++.+..+|.++...+|.+++..++.+.....++....++ .++|.|.+.+.. .+..+++.|+|++......
T Consensus 323 i--I~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~-ae~k~kKEACWAisNatsg 399 (526)
T COG5064 323 I--INCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSS-AEYKIKKEACWAISNATSG 399 (526)
T ss_pred h--eecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHH-HHHHHHHHHHHHHHhhhcc
Confidence 0 01235667777788888899999999999998777677766665 489999998874 4678999999999887654
Q ss_pred Hh--ccccccHH--HHHHHHHHHccCCCCCCCCchhHHHHHHHHHH
Q 002876 681 LE--DKILPYCD--GIMTQLLKDLSSNQLHRSVKPPIFSCFGDIAL 722 (872)
Q Consensus 681 ~~--~~~~~~~~--~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~ 722 (872)
.- ++...|+- .++..|..+|.-. +..+-+.++.|+..+..
T Consensus 400 g~~~PD~iryLv~qG~IkpLc~~L~~~--dNkiiev~LD~~eniLk 443 (526)
T COG5064 400 GLNRPDIIRYLVSQGFIKPLCDLLDVV--DNKIIEVALDAIENILK 443 (526)
T ss_pred ccCCchHHHHHHHccchhHHHHHHhcc--CccchhhhHHHHHHHHh
Confidence 42 22223332 3566666666554 34455667777777665
No 59
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.16 E-value=9e-08 Score=103.69 Aligned_cols=355 Identities=17% Similarity=0.223 Sum_probs=235.9
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHH
Q 002876 97 ILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKIL 176 (872)
Q Consensus 97 ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~ 176 (872)
++.+|.+.+...-..++.+|.++.....|....+.+.+.+...+.++++.+|..++..++.+.... ......-.-..++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHH
Confidence 788888887777788889999998866553346788889999999999999999999998887654 1111111235678
Q ss_pred HHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHh
Q 002876 177 TAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAP 256 (872)
Q Consensus 177 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~ 256 (872)
+.++..+. +++..|...|++++..+...-.. ... ...+.....+..++..++..+|..+++++..+++..++.+..
T Consensus 122 ~~i~~~L~--~~d~~Va~~A~~~L~~l~~~~~~-~~~-l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 122 PLIIQCLR--DPDLSVAKAAIKALKKLASHPEG-LEQ-LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred HHHHHHHc--CCcHHHHHHHHHHHHHHhCCchh-HHH-HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888 89999999999999998753221 100 000123566666776668889999999999999888776654
Q ss_pred hHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCC
Q 002876 257 YIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEED 335 (872)
Q Consensus 257 ~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d 335 (872)
..+ .+++.++..+.++|.-++..+++.+..+++... ...|+.+ ..+++.+.+.+....+|
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~-----------------g~~yL~~--~gi~~~L~~~l~~~~~d 258 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH-----------------GLQYLEQ--QGIFDKLSNLLQDSEED 258 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh-----------------HHHHHHh--CCHHHHHHHHHhccccC
Confidence 443 589999999988777789999999999987321 1123322 24667777776654444
Q ss_pred cccCCccchHhH-HHHHHHHHHHHHcCC---cchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCC-cc----hHH
Q 002876 336 QDQDEGAWNIAM-AGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE-KL----VPL 406 (872)
Q Consensus 336 ~~~~~~~~~~r~-~a~~~l~~l~~~~~~---~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~-~~----~~~ 406 (872)
+. - -.... ......+.++...+. ...|.++..+.+.+.+.+...+.+|+-++|.++.....+ .+ .+.
T Consensus 259 p~--~--~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~ 334 (503)
T PF10508_consen 259 PR--L--SSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPA 334 (503)
T ss_pred Cc--c--cchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchH
Confidence 31 1 11111 112344444443222 234667777777778888899999999999998654211 11 233
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHH-------------HHHHhccCC-hh
Q 002876 407 VNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIIS-------------VLLQSMKDV-PN 472 (872)
Q Consensus 407 ~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~-------------~l~~~l~d~-~~ 472 (872)
+..++..+.... ......+|..++.+++.+...... ...+-+..+.. .++..++.. +.
T Consensus 335 ~~~~l~~~~~~~-~~~~~~lk~r~l~al~~il~~~~~-------~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~e 406 (503)
T PF10508_consen 335 MKHVLKAIGDAI-KSGSTELKLRALHALASILTSGTD-------RQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPE 406 (503)
T ss_pred HHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHhcCCC-------CchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchH
Confidence 455667777777 777788999999999999764421 01111112222 233344433 67
Q ss_pred HHHHHHHHHHHHHHh
Q 002876 473 VAEKACGALYFLAQG 487 (872)
Q Consensus 473 v~~~a~~al~~l~~~ 487 (872)
+|..+...+..++..
T Consensus 407 lr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 407 LRCAAYRLLQALAAQ 421 (503)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888888777777653
No 60
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.15 E-value=2.3e-07 Score=100.61 Aligned_cols=384 Identities=17% Similarity=0.188 Sum_probs=238.6
Q ss_pred ChhHHHHHHHHhcCCCHHHHHHHHHHHHH-HHhcC-hhHH-HHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHH
Q 002876 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQ-YQEQN-LPGF-LLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (872)
Q Consensus 1 ~~~~l~~~l~~~~s~~~~~r~~a~~~L~~-~~~~~-~~~~-~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (872)
|+..+...++++...+ .+-++...++. +...+ ...+ ...++..+.+. +.+.-..++-+|++.+...
T Consensus 1 ~~~~~~~~l~~l~~~~--~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~--~~e~v~~~~~iL~~~l~~~------- 69 (503)
T PF10508_consen 1 MEEWINELLEELSSKA--ERLEALPELKTELSSSPFLERLPEPVLFDCLNTS--NREQVELICDILKRLLSAL------- 69 (503)
T ss_pred CchHHHHHHHHHhccc--chHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc--ChHHHHHHHHHHHHHHhcc-------
Confidence 7888888999887773 33444444442 22221 1122 12255556542 3444466777888877632
Q ss_pred hhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCC---CCchhHHHHHHHhhcCCChhHHHHHHHH
Q 002876 78 LVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---KQWPELIGALLSNIHQLPPHTKQATLET 154 (872)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~al~~ 154 (872)
-+......+.+.+..+|.++++.||..++..+++++.+.... -.-+++++.++.++.+++..+...|..+
T Consensus 70 -------~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~ 142 (503)
T PF10508_consen 70 -------SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKA 142 (503)
T ss_pred -------CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHH
Confidence 133447788899999999999999999999999988654210 1347899999999999999999999999
Q ss_pred HHHhhhhccccccchhh-HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCH
Q 002876 155 LGYICEEVSSDAVEQDH-VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEV 233 (872)
Q Consensus 155 l~~i~~~~~~~~l~~~~-~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 233 (872)
+..+++.- ..+ ... -+...+.+.+.+. .++..+|..+++++..+....+..+..- ....+++.+...+.++|.
T Consensus 143 L~~l~~~~--~~~-~~l~~~~~~~~L~~l~~--~~~~~vR~Rv~el~v~i~~~S~~~~~~~-~~sgll~~ll~eL~~dDi 216 (503)
T PF10508_consen 143 LKKLASHP--EGL-EQLFDSNLLSKLKSLMS--QSSDIVRCRVYELLVEIASHSPEAAEAV-VNSGLLDLLLKELDSDDI 216 (503)
T ss_pred HHHHhCCc--hhH-HHHhCcchHHHHHHHHh--ccCHHHHHHHHHHHHHHHhcCHHHHHHH-HhccHHHHHHHHhcCccH
Confidence 99998753 222 111 1122566666665 4578899999999888765444333210 112478888888888899
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHhhHH--HHHHHHHHHHhcCChh-----h-HHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 002876 234 KIRQAAFECLVAISSTYYEKLAPYIQ--DIFNITAKAVREDEEP-----V-ALQAIEFWSSVCDEEIDILEEYGGDFSGD 305 (872)
Q Consensus 234 ~~r~~~~~~l~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~-----v-~~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 305 (872)
-++..+++++..++. .+.. ..|+. .+++.+...+.+..++ + ....+.|++.++...
T Consensus 217 Lvqlnalell~~La~-~~~g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~-------------- 280 (503)
T PF10508_consen 217 LVQLNALELLSELAE-TPHG-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS-------------- 280 (503)
T ss_pred HHHHHHHHHHHHHHc-ChhH-HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC--------------
Confidence 999999999999998 3322 33433 4666666666542222 1 223335555555421
Q ss_pred CCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHc-CCcch--------hchHHHHHhhh
Q 002876 306 SDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-GDDIV--------PLVMPFVEENI 376 (872)
Q Consensus 306 ~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~-~~~~~--------~~l~~~l~~~~ 376 (872)
+..+...++.++..+.+.+.. .| -+.+..|.++++.++... |...+ ..++..+....
T Consensus 281 -----~~~v~~~~p~~~~~l~~~~~s--~d-------~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~ 346 (503)
T PF10508_consen 281 -----PQEVLELYPAFLERLFSMLES--QD-------PTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI 346 (503)
T ss_pred -----hHHHHHHHHHHHHHHHHHhCC--CC-------hhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 112223334445555543322 11 255788889998887643 33332 33444444555
Q ss_pred cCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHH-------------HHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 002876 377 TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALN-------------FMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (872)
Q Consensus 377 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~-------------~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (872)
.+..-..|..++.+++.+........ .+.+..+.. .+...+ +.|-|.+|.++..++..++.+
T Consensus 347 ~~~~~~lk~r~l~al~~il~~~~~~~-~~~i~~~~~~w~~~~~~~~~~~~l~~~~-~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILTSGTDRQ-DNDILSITESWYESLSGSPLSNLLMSLL-KQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred cCCchHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHhcCCchHHHHHHHh-cCCchHHHHHHHHHHHHHhcC
Confidence 55555688889999999865543211 111111111 455666 778899999999999988885
No 61
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.3e-05 Score=81.39 Aligned_cols=375 Identities=13% Similarity=0.144 Sum_probs=215.8
Q ss_pred cHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCC-hhHHHHHHHHHHHHHHhcccCCCCCCCCchh
Q 002876 423 NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDV-PNVAEKACGALYFLAQGFEDAISPSSPLTPF 501 (872)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~ 501 (872)
+++-.+.|++.++.+...+..+ +.....+-.-+++.++..+.++ .-.+.+||..+..+-+.+++ .. .
T Consensus 429 narq~egalr~lasi~s~itk~----sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd----~~----i 496 (970)
T COG5656 429 NARQAEGALRLLASIKSFITKM----SPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKD----NG----I 496 (970)
T ss_pred cHHHHhhHHHHHHHHHHHhccC----chHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhccc----ch----H
Confidence 5666778888888887754321 1122233334556666677764 57899999999999776654 22 4
Q ss_pred HHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 002876 502 FQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLL 581 (872)
Q Consensus 502 l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 581 (872)
+-.+++...+++.+. +--++..+..|+..++... .+.+.+...+|..++.+-...+ .-+- ..+
T Consensus 497 ll~aye~t~ncl~nn---~lpv~ieAalAlq~fi~~~--q~h~k~sahVp~tmekLLsLSn-----~fei-------D~L 559 (970)
T COG5656 497 LLEAYENTHNCLKNN---HLPVMIEAALALQFFIFNE--QSHEKFSAHVPETMEKLLSLSN-----TFEI-------DPL 559 (970)
T ss_pred HHHHHHHHHHHHhcC---CcchhhhHHHHHHHHHhch--hhhHHHHhhhhHHHHHHHHhcc-----cccc-------hHH
Confidence 556777777888774 4457778888998888766 3444455556666665544321 1111 135
Q ss_pred HHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHH----HHhc----c---ccchhhHHHHHHH------HHHHHhh--hh
Q 002876 582 CGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLR----VFAI----R---SATAHEEAMLAIG------ALAYATG--QD 642 (872)
Q Consensus 582 ~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~----~l~~----~---~~~~~~~a~~~l~------~l~~~~~--~~ 642 (872)
..++..++..++.. +.||+++++..+.+ +.++ + ...+.++-+.+.| .++-++. +.
T Consensus 560 S~vMe~fVe~fseE------Lspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~ 633 (970)
T COG5656 560 SMVMESFVEYFSEE------LSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPL 633 (970)
T ss_pred HHHHHHHHHHhHHh------hchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchH
Confidence 67788888888776 88888877766655 3222 2 1223344444433 3333333 23
Q ss_pred hHhhhH-HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHH
Q 002876 643 FLKYMP-EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 721 (872)
Q Consensus 643 ~~~~~~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~ 721 (872)
..+++. .+.|.+.-.+.+. -.+.-..|+..+....-..+ ++.|....+.+.+.+++.++.. ....+.+..++..+.
T Consensus 634 vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~sk-eI~pimwgi~Ell~~~l~~~~t-~~y~ee~~~al~nfi 710 (970)
T COG5656 634 VLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSK-EIEPIMWGIFELLLNLLIDEIT-AVYSEEVADALDNFI 710 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHH-HhhhhhhHHHHHHHhcccccch-hhhHHHHHHHHHHHH
Confidence 444554 3666666666644 33667778887776655444 4557777888888888777632 234456777888887
Q ss_pred HHhccchH---HhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHH
Q 002876 722 LAIGENFE---KYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFL 798 (872)
Q Consensus 722 ~~~~~~~~---~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l 798 (872)
..-+..|. -|..-+...+...+... + ++..+ +..+++....++-.+... ....|++-++...
T Consensus 711 tyG~~ef~~~~~y~~i~~eI~~~~l~sE------~----n~l~D-~~~vc~i~e~l~Ln~rd~----Ll~qy~plfi~va 775 (970)
T COG5656 711 TYGKTEFMDAGIYGSICSEISKLCLCSE------E----NFLED-FIGVCRIIESLILNIRDE----LLSQYLPLFISVA 775 (970)
T ss_pred HhCccccccccchhHHHHHHHHHHHcch------h----hhHHH-HHHHHHHHHHHHHHccch----hHHhhhHHHHHHH
Confidence 76655554 35555555555555443 1 12222 244666666776665442 3345666666665
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcC
Q 002876 799 DSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSS 850 (872)
Q Consensus 799 ~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~ 850 (872)
...+.-.+.....+..++.++-...-.-+....+++..++|...++..-.+.
T Consensus 776 gs~l~~~dElg~~sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~~ 827 (970)
T COG5656 776 GSGLKMIDELGPASVYALELIINNLILRPKETLQILEEQGYLQSFFEKWFSQ 827 (970)
T ss_pred hhhhhccccccchhhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHhc
Confidence 5444322223344555555544333333333334555555666666555533
No 62
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.07 E-value=4e-10 Score=87.66 Aligned_cols=76 Identities=39% Similarity=0.536 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcC
Q 002876 23 AEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLS 102 (872)
Q Consensus 23 a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~ 102 (872)
||++|.++++++ |+|+..|++++.+.+.+..+|++|+++|||.|.++|.... ...|..++++.+..||+.+++.|.
T Consensus 1 AE~~L~~~~~~~-p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~---~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQN-PGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSK---QKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSC-TCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHH---HHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhh---ccCCCCCCHHHHHHHHHHHHHHHc
Confidence 799999999998 8999999999988788999999999999999999998655 467889999999999999999874
No 63
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.05 E-value=2.8e-06 Score=94.34 Aligned_cols=180 Identities=18% Similarity=0.204 Sum_probs=127.7
Q ss_pred hhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhh-HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCC
Q 002876 625 HEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQ-VCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSN 703 (872)
Q Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 703 (872)
|+.+-.+|..+++.+|..+...++.++..++..+++..+.+ .-...+.++..+...++..+.| +-+.++.++.+..+.
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~ 828 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSI 828 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccc
Confidence 66777889999999999999899999999988887644333 3345566666666667777777 667888888888887
Q ss_pred CCCCCCchhHHHHHHHHHHHhccc-hHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 002876 704 QLHRSVKPPIFSCFGDIALAIGEN-FEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSP 782 (872)
Q Consensus 704 ~~~~~v~~~~~~~l~~i~~~~~~~-~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 782 (872)
+..+|..++.|++.+......+ +...++.++|.+- .+..- .-|.++.+.+..+...
T Consensus 829 --~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~-~~~~~---------------~~r~~a~e~~~~l~~~----- 885 (1549)
T KOG0392|consen 829 --HIAVRYAAARCIGTMFKSATRETMATVINGFLPLLG-DLDKF---------------VRRQGADELIELLDAV----- 885 (1549)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-chhhH---------------hhhhhHHHHHHHHHHh-----
Confidence 7889999999999999865433 4444444444443 22111 1123333333333333
Q ss_pred cccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCc
Q 002876 783 KTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNA 830 (872)
Q Consensus 783 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~ 830 (872)
....+.||..-+++.+...+.+ ..+++|.++..++..+....+.+-
T Consensus 886 l~~~l~~~~~Llv~pllr~msd--~~d~vR~aat~~fa~lip~~~le~ 931 (1549)
T KOG0392|consen 886 LMVGLVPYNPLLVVPLLRRMSD--QIDSVREAATKVFAKLIPLLPLEA 931 (1549)
T ss_pred hcccccccceeehhhhhccccc--chHHHHHHHHHHHHHHhccccccc
Confidence 2334678998899999988885 688999999999999999987554
No 64
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.03 E-value=8.9e-08 Score=97.79 Aligned_cols=220 Identities=17% Similarity=0.252 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhc-----CChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 002876 233 VKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE-----DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSD 307 (872)
Q Consensus 233 ~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (872)
+.++..+++.+....+.|.+.+.++++.++..+++.+.. ..+.+...+++++.++++....
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~-------------- 175 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHH-------------- 175 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhH--------------
Confidence 457788999999999999999999999999999988853 2235677889998887653210
Q ss_pred CchHhH--HHhhhhhHHH-HHHHHHhcccCC-------cc-------cCCccchHhHHHHHHHHHHHHHcCCcchhchHH
Q 002876 308 IPCFYF--IKHALPVLVP-LLLETLLKQEED-------QD-------QDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMP 370 (872)
Q Consensus 308 ~~~~~~--~~~~l~~l~~-~l~~~l~~~~~d-------~~-------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~ 370 (872)
.+. .++.+..++. +++..|+-.++| +. +..+..+.|.+|.+.+..+++.+++.+.+.+..
T Consensus 176 ---~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~ 252 (370)
T PF08506_consen 176 ---KNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQ 252 (370)
T ss_dssp ---HTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 001 1344444443 334444433222 11 123456889999999999999988877777777
Q ss_pred HHHhhhc------CcchhhhHHHHHHHHHhhCCCCCC-----------cchHHH-HHHHHHHHHHhccCCcHHHHHHHHH
Q 002876 371 FVEENIT------KQEWRQREAATYAFGSILEGPSPE-----------KLVPLV-NIALNFMLTALMQDPNNHVKDTTAW 432 (872)
Q Consensus 371 ~l~~~~~------~~~~~~r~aal~~l~~l~~~~~~~-----------~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~ 432 (872)
++.+.+. +.+|+.+.+|+..+++++...... .+..++ ..++|-+. .- .+.+|.+|..|++
T Consensus 253 ~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~-~~~~piLka~aik 330 (370)
T PF08506_consen 253 YIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PD-VNSHPILKADAIK 330 (370)
T ss_dssp HHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--S-S-S-HHHHHHHHH
T ss_pred HHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-cc-CCCCcchHHHHHH
Confidence 6665543 467999999999999998654211 122222 22333333 22 3678999999999
Q ss_pred HHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHH
Q 002876 433 TLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGAL 481 (872)
Q Consensus 433 ~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al 481 (872)
.+..+...++ .+.+..++|.++..|.+ +..|+..|+.++
T Consensus 331 ~~~~Fr~~l~----------~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 331 FLYTFRNQLP----------KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHGGGS-----------HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhhCC----------HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 9998888763 56788999999999996 567788777654
No 65
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.4e-06 Score=92.65 Aligned_cols=434 Identities=14% Similarity=0.126 Sum_probs=256.5
Q ss_pred ChhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhc-CCCChhHHHHHHHHHhcccccchhhhHHHhh
Q 002876 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN-DEKPVESRKLAGLILKNALDAKEQHRKFELV 79 (872)
Q Consensus 1 ~~~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~-~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~ 79 (872)
|+.-+..++......|-+..+-...++..+...+|...+...-.++.+ .+.++-+|.+|..++...=
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~------------ 114 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR------------ 114 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe------------
Confidence 344455666666777888889999999988887766665555444443 2567899999987765421
Q ss_pred hhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002876 80 QRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYIC 159 (872)
Q Consensus 80 ~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~ 159 (872)
-+...+++.+-+.+++.+.++.+|+.++.+++.+........+-..+++.|.+++.++++.+...|+..+..|.
T Consensus 115 ------v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 115 ------VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIH 188 (734)
T ss_pred ------ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 13455678888999999999999999999999998765332455789999999999999999999999999998
Q ss_pred hhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHH
Q 002876 160 EEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAA 239 (872)
Q Consensus 160 ~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~ 239 (872)
+.- ++.........++..++..++ +.+.=-+...++++.. +.++.. .+...+++.+...++..+..+...+
T Consensus 189 e~~-~~~~~~~l~~~~~~~lL~al~--ec~EW~qi~IL~~l~~---y~p~d~---~ea~~i~~r~~p~Lqh~n~avvlsa 259 (734)
T KOG1061|consen 189 ESH-PSVNLLELNPQLINKLLEALN--ECTEWGQIFILDCLAE---YVPKDS---REAEDICERLTPRLQHANSAVVLSA 259 (734)
T ss_pred HhC-CCCCcccccHHHHHHHHHHHH--HhhhhhHHHHHHHHHh---cCCCCc---hhHHHHHHHhhhhhccCCcceEeeh
Confidence 875 321101223344444444444 2222223444444444 444322 2234677877777877888888888
Q ss_pred HHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhh
Q 002876 240 FECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALP 319 (872)
Q Consensus 240 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (872)
.+.+...+......-...+..+-+.+...+.... ++...++.-+..+....+.+.
T Consensus 260 vKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~------------------------ 314 (734)
T KOG1061|consen 260 VKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEIL------------------------ 314 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHH------------------------
Confidence 8888877766554322333344444444444433 666666655444444332211
Q ss_pred hHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCC
Q 002876 320 VLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS 399 (872)
Q Consensus 320 ~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~ 399 (872)
..-...+--.-.|+ ..++..-.+++..++. +..++.++.-+.++...-+...-..++.++|.++-...
T Consensus 315 ---~~~~~~Ff~kynDP------iYvK~eKleil~~la~---~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e 382 (734)
T KOG1061|consen 315 ---KVEIKVFFCKYNDP------IYVKLEKLEILIELAN---DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAE 382 (734)
T ss_pred ---HhHhHeeeeecCCc------hhhHHHHHHHHHHHhh---HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhh
Confidence 10000000000000 1122111233333322 33344455556666666555555556778887765442
Q ss_pred CCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhcc--CChhHHHHH
Q 002876 400 PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK--DVPNVAEKA 477 (872)
Q Consensus 400 ~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--d~~~v~~~a 477 (872)
+. ..++..++..+ +-....|...+...+..+...+|. ....+++.+...+. ++|+.|.+-
T Consensus 383 -~~-----~~cv~~lLell-~~~~~yvvqE~~vvi~dilRkyP~-----------~~~~vv~~l~~~~~sl~epeak~am 444 (734)
T KOG1061|consen 383 -QS-----NDCVSILLELL-ETKVDYVVQEAIVVIRDILRKYPN-----------KYESVVAILCENLDSLQEPEAKAAL 444 (734)
T ss_pred -hh-----hhhHHHHHHHH-hhcccceeeehhHHHHhhhhcCCC-----------chhhhhhhhcccccccCChHHHHHH
Confidence 11 45566666666 544444555556666666666542 22466676666666 368888888
Q ss_pred HHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHH
Q 002876 478 CGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530 (872)
Q Consensus 478 ~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~ 530 (872)
.|.++...+..+ ..+.+++.+++.+.+. ...++-..+.+
T Consensus 445 iWilg~y~~~i~-----------~a~elL~~f~en~~dE---~~~Vql~LLta 483 (734)
T KOG1061|consen 445 IWILGEYAERIE-----------NALELLESFLENFKDE---TAEVQLELLTA 483 (734)
T ss_pred HHHHhhhhhccC-----------cHHHHHHHHHhhcccc---hHHHHHHHHHH
Confidence 888888876653 3345566666666543 34454333333
No 66
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.99 E-value=9.5e-08 Score=105.11 Aligned_cols=300 Identities=15% Similarity=0.173 Sum_probs=196.5
Q ss_pred HHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhh
Q 002876 132 LIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN 210 (872)
Q Consensus 132 l~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (872)
++..+..+++.= ....|..|+..+..+....+. ...++.++|.++..+. |+..+||..|+.++..++..+.+.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~--Ds~a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLM--DSEADVRATALETLTELLALVRDI 496 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhc--CchHHHHHHHHHHHHHHHhhccCC
Confidence 455555555542 356778899999888776632 3568999999999998 999999999999999988765443
Q ss_pred ccCh--hhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHH-HHhcCChhhHHHHHHHHHH
Q 002876 211 FSND--MERDYIMRVVCEATLS-PEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAK-AVREDEEPVALQAIEFWSS 286 (872)
Q Consensus 211 ~~~~--~~~~~il~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~v~~~a~~~~~~ 286 (872)
.... ...+.+++.+..+..| ....+|.+...+|..++...+.++.-.. ..-.. ..++++.+-
T Consensus 497 ~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q----~~~~~g~~n~~nset---------- 562 (1431)
T KOG1240|consen 497 PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQ----ELRQAGMLNDPNSET---------- 562 (1431)
T ss_pred CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHH----HHHhcccccCccccc----------
Confidence 2211 2236788888888888 5677888888999998887655432110 00001 112222210
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCc-ch
Q 002876 287 VCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD-IV 365 (872)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~-~~ 365 (872)
..+. .+. .-.+-+...+...+ ...+++ ..-.+|.+-.+.+..|+..||+. .-
T Consensus 563 ~~~~------~~~---------~~~~~L~~~V~~~v---~sLlsd---------~~~~Vkr~Lle~i~~LC~FFGk~ksN 615 (1431)
T KOG1240|consen 563 APEQ------NYN---------TELQALHHTVEQMV---SSLLSD---------SPPIVKRALLESIIPLCVFFGKEKSN 615 (1431)
T ss_pred cccc------ccc---------hHHHHHHHHHHHHH---HHHHcC---------CchHHHHHHHHHHHHHHHHhhhcccc
Confidence 0000 000 00001111111112 222221 11367888888888899888753 45
Q ss_pred hchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCC
Q 002876 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGST 445 (872)
Q Consensus 366 ~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 445 (872)
+.+++++...++|.+|..|-+-.--+..++-..+..... .-++|.+.+++ .|+.+.|-..|+.++..+++.-
T Consensus 616 D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~s---eyllPLl~Q~l-tD~EE~Viv~aL~~ls~Lik~~---- 687 (1431)
T KOG1240|consen 616 DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVS---EYLLPLLQQGL-TDGEEAVIVSALGSLSILIKLG---- 687 (1431)
T ss_pred cchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHH---HHHHHHHHHhc-cCcchhhHHHHHHHHHHHHHhc----
Confidence 678899999999999999987765555444333323333 34589999999 9999999999999999999853
Q ss_pred CCCcccCccchHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhccc
Q 002876 446 LETPIINQGNCQQIISVLLQSMK-DVPNVAEKACGALYFLAQGFED 490 (872)
Q Consensus 446 ~~~~~~~~~~~~~il~~l~~~l~-d~~~v~~~a~~al~~l~~~~~~ 490 (872)
.....+.-.++......|. .|.-+|..++..+....+.++.
T Consensus 688 ----ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 688 ----LLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred ----ccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 2455566667776666665 4678999999999999887654
No 67
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2.4e-05 Score=83.37 Aligned_cols=448 Identities=10% Similarity=0.105 Sum_probs=255.2
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhc
Q 002876 132 LIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF 211 (872)
Q Consensus 132 l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~ 211 (872)
+.+.+.+-+++++..+.-.||.+++.++. ++ -.+.+.|-+-..++ +.++.+|+.|+-|...++...|+..
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~s---~E-----mardlapeVe~Ll~--~~~~~irKKA~Lca~r~irK~P~l~ 177 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNICS---PE-----MARDLAPEVERLLQ--HRDPYIRKKAALCAVRFIRKVPDLV 177 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccCC---HH-----HhHHhhHHHHHHHh--CCCHHHHHHHHHHHHHHHHcCchHH
Confidence 45566777777777777788888887765 22 24555666666666 7899999999999999887665533
Q ss_pred cChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhH---hhHHHHHHHHHHHHhc-----------CChhhH
Q 002876 212 SNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA---PYIQDIFNITAKAVRE-----------DEEPVA 277 (872)
Q Consensus 212 ~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~---~~~~~l~~~~~~~~~~-----------~~~~v~ 277 (872)
..+++....++.+.+..|-.+.+..+..+++..++.+. ...+.++..+-+.... .++=++
T Consensus 178 ------e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQ 251 (866)
T KOG1062|consen 178 ------EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQ 251 (866)
T ss_pred ------HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHH
Confidence 35666666777888889989999999999988665432 2233344433333221 223345
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHh-HHHHHHHHHH
Q 002876 278 LQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIA-MAGGTCLGLV 356 (872)
Q Consensus 278 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r-~~a~~~l~~l 356 (872)
...+.++.-+..... -....+..+ |-+..++.+.. -++- ..-.+|+..+
T Consensus 252 i~iLrlLriLGq~d~--------------------daSd~M~Di---Laqvatntdss-------kN~GnAILYE~V~TI 301 (866)
T KOG1062|consen 252 IRILRLLRILGQNDA--------------------DASDLMNDI---LAQVATNTDSS-------KNAGNAILYECVRTI 301 (866)
T ss_pred HHHHHHHHHhcCCCc--------------------cHHHHHHHH---HHHHHhccccc-------ccchhHHHHHHHHHH
Confidence 556665555543110 011111111 22222221110 0111 1124555555
Q ss_pred HHHcCC-cchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Q 002876 357 ARTVGD-DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLG 435 (872)
Q Consensus 357 ~~~~~~-~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~ 435 (872)
....++ .....-+.++.+.+.+++-+.|+-|+..|..+...- +.....|- ..++.++ +|++..+|..|+...-
T Consensus 302 ~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d-~~avqrHr----~tIleCL-~DpD~SIkrralELs~ 375 (866)
T KOG1062|consen 302 MDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQD-PTAVQRHR----STILECL-KDPDVSIKRRALELSY 375 (866)
T ss_pred HhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCC-cHHHHHHH----HHHHHHh-cCCcHHHHHHHHHHHH
Confidence 555433 233344566667777777788988888887777653 23333332 4567899 9999999999999888
Q ss_pred HhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhc
Q 002876 436 RMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTH 514 (872)
Q Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~ 514 (872)
.+.... .+..++..++..|.. ++.++...+.-+..+++.+.+ .-..|++.++..+...-
T Consensus 376 ~lvn~~-------------Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP------~k~W~idtml~Vl~~aG- 435 (866)
T KOG1062|consen 376 ALVNES-------------NVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAP------DKRWHIDTMLKVLKTAG- 435 (866)
T ss_pred HHhccc-------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC------cchhHHHHHHHHHHhcc-
Confidence 777632 344677777777764 577788888888888888743 23346666655544332
Q ss_pred cCCchhhhhHHHHHHHHHHHHHccccCcHHH-HHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhC
Q 002876 515 REDAGESRLRTAAYETLNEVVRCSTDETAPM-VMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLG 593 (872)
Q Consensus 515 ~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 593 (872)
+ -|+..+...+-.++.........| ...++..+....... .+.+ .+...+.+||+....-+-
T Consensus 436 ~------~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~--------is~e---~l~qVa~W~IGEYGdlll 498 (866)
T KOG1062|consen 436 D------FVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLD--------ISQE---PLLQVASWCIGEYGDLLL 498 (866)
T ss_pred c------ccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhh--------hhhh---hHHHHHHHHhhhhhHHhh
Confidence 1 234444555555555553222222 233333332221111 1111 234468889988764432
Q ss_pred CCcchhhHhhHhHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHH
Q 002876 594 SSEQTKYVFMQYADQMMGLFLRVFAIR--SATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITV 671 (872)
Q Consensus 594 ~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~ 671 (872)
......+....-...++..+...+... +..++..++.++.++...+... .+-+.+++-... ..-+.++++.|+
T Consensus 499 ~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~-~~ri~~lI~~~~----~s~~~elQQRa~ 573 (866)
T KOG1062|consen 499 DGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS-SERIKQLISSYK----SSLDTELQQRAV 573 (866)
T ss_pred cCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-HHHHHHHHHHhc----ccccHHHHHHHH
Confidence 210000012223345666666666553 3457788888999988776654 233333333222 233456666666
Q ss_pred HH
Q 002876 672 GV 673 (872)
Q Consensus 672 ~~ 673 (872)
+.
T Consensus 574 E~ 575 (866)
T KOG1062|consen 574 EY 575 (866)
T ss_pred HH
Confidence 54
No 68
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.96 E-value=0.00014 Score=83.22 Aligned_cols=147 Identities=17% Similarity=0.142 Sum_probs=110.0
Q ss_pred CCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhh
Q 002876 127 KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGF 206 (872)
Q Consensus 127 ~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (872)
..+..++..++..+..+...+|..|++|++.+++.- |..+. .+.+...+-..+. |.+..||.+|++.++.++..
T Consensus 812 ~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~D-p~vL~---~~dvq~~Vh~R~~--DssasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEAD-PSVLS---RPDVQEAVHGRLN--DSSASVREAALDLVGRFVLS 885 (1692)
T ss_pred HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcC-hHhhc---CHHHHHHHHHhhc--cchhHHHHHHHHHHhhhhhc
Confidence 356677788888888888899999999999998764 54442 2334445555566 89999999999999998765
Q ss_pred chhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002876 207 AQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSS 286 (872)
Q Consensus 207 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~ 286 (872)
.++. ...+...+.+.+.|+...||+.+.+.+..++..+|.+ +.+..++.-++..++|++..+...+.+.+..
T Consensus 886 ~~e~------~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~kLv~etf~k 957 (1692)
T KOG1020|consen 886 IPEL------IFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIKKLVRETFLK 957 (1692)
T ss_pred cHHH------HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 4432 2567788888889999999999999999999988774 3345555556666677766677777765554
Q ss_pred H
Q 002876 287 V 287 (872)
Q Consensus 287 l 287 (872)
+
T Consensus 958 l 958 (1692)
T KOG1020|consen 958 L 958 (1692)
T ss_pred H
Confidence 3
No 69
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.90 E-value=4.8e-05 Score=77.67 Aligned_cols=377 Identities=12% Similarity=0.087 Sum_probs=191.9
Q ss_pred HHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHHhh-cCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccc
Q 002876 91 AQIKSFILKTLSSPA---HDARSTASQVVAKVAGIE-LPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDA 166 (872)
Q Consensus 91 ~~i~~~ll~~l~~~~---~~vr~~~a~~l~~i~~~~-~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~ 166 (872)
-.+.+...+.++++. ..-|..+...+..++..+ +|+..-.+++-.+..++++.++..|.....++..+....
T Consensus 21 ~t~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~t---- 96 (898)
T COG5240 21 RTLLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLT---- 96 (898)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcc----
Confidence 345555666666542 456666666666666543 233445678889999999999999988777776664432
Q ss_pred cchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 002876 167 VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAI 246 (872)
Q Consensus 167 l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l 246 (872)
...-.....+++-++. ..+..+|-.|++.|...++- .. ...+=..+-...-++.+.++.+++-.-..+
T Consensus 97 ---edvlm~tssiMkD~~~-g~~~~~kp~AiRsL~~Vid~---~t-----v~~~er~l~~a~Vs~~~a~~saalv~aYhL 164 (898)
T COG5240 97 ---EDVLMGTSSIMKDLNG-GVPDDVKPMAIRSLFSVIDG---ET-----VYDFERYLNQAFVSTSMARRSAALVVAYHL 164 (898)
T ss_pred ---hhhhHHHHHHHHhhcc-CCccccccHHHHHHHHhcCc---ch-----hhhHHHHhhhhccccchhhhhhHHHHhhhh
Confidence 2223334455555553 33457899999998886541 11 112223333444556666666654433332
Q ss_pred HHHhHHhhHhhHHHHHHHHHHHHhcCC------------hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHH
Q 002876 247 SSTYYEKLAPYIQDIFNITAKAVREDE------------EPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFI 314 (872)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~~~~~~------------~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (872)
.-........+.+..-+.++..-+.++ +--.-.|+.++..+-...
T Consensus 165 lp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~d----------------------- 221 (898)
T COG5240 165 LPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTD----------------------- 221 (898)
T ss_pred ccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhccc-----------------------
Confidence 222222222233322222222211110 011222333322221100
Q ss_pred HhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHc--CCcchhchHHHHHhhhcCcchhhhHHHHHHHH
Q 002876 315 KHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV--GDDIVPLVMPFVEENITKQEWRQREAATYAFG 392 (872)
Q Consensus 315 ~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~ 392 (872)
+-....+ ++.+.... ...-..+....+....... ....+..+.|++..++++.---+...+..++.
T Consensus 222 kma~lkl----v~hf~~n~--------smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~ 289 (898)
T COG5240 222 KMAQLKL----VEHFRGNA--------SMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVC 289 (898)
T ss_pred HHHHHHH----HHHhhccc--------ccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence 0011111 12111100 0000111112222222222 23455678899998888754445555555555
Q ss_pred HhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChh
Q 002876 393 SILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPN 472 (872)
Q Consensus 393 ~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~ 472 (872)
+++... .-.+++...+..+...| ..+....|.+|++.+.+++-..|+. .. ..-+.+-..+.|.
T Consensus 290 ~~~~~n---v~~~~~~~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~k------v~-----vcN~evEsLIsd~-- 352 (898)
T COG5240 290 ALSEEN---VGSQFVDQTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQK------VS-----VCNKEVESLISDE-- 352 (898)
T ss_pred HHHHhc---cCHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCce------ee-----ecChhHHHHhhcc--
Confidence 554432 23455677888888888 8888899999999999999877632 11 1112222233331
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHH
Q 002876 473 VAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVM 547 (872)
Q Consensus 473 v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~ 547 (872)
-|..+..|+.++.+.- -...+..++..+...+.+-. ...+..+++++.++.-.++.+...++.
T Consensus 353 Nr~IstyAITtLLKTG---------t~e~idrLv~~I~sfvhD~S---D~FKiI~ida~rsLsl~Fp~k~~s~l~ 415 (898)
T COG5240 353 NRTISTYAITTLLKTG---------TEETIDRLVNLIPSFVHDMS---DGFKIIAIDALRSLSLLFPSKKLSYLD 415 (898)
T ss_pred cccchHHHHHHHHHcC---------chhhHHHHHHHHHHHHHhhc---cCceEEeHHHHHHHHhhCcHHHHHHHH
Confidence 1333556677776541 12244444444444443332 224446778888877777755444433
No 70
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.89 E-value=1.1e-05 Score=85.94 Aligned_cols=367 Identities=13% Similarity=0.173 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHh
Q 002876 234 KIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE-DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFY 312 (872)
Q Consensus 234 ~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (872)
...+.+++.+..++... +.+......++..+....+. .+.++....+..+..+.+...... .. .
T Consensus 17 ~~~~~~L~~l~~ls~~~-~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~--------~~------~ 81 (415)
T PF12460_consen 17 SNYERILEALAALSTSP-QILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK--------QF------E 81 (415)
T ss_pred hHHHHHHHHHHHHHCCh-hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc--------cc------c
Confidence 45667777777777643 23333333444444333332 244566667776666665321100 00 0
Q ss_pred HHHhhhhh-HHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCc----chhchHHHHHh-----hhc-Ccc-
Q 002876 313 FIKHALPV-LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD----IVPLVMPFVEE-----NIT-KQE- 380 (872)
Q Consensus 313 ~~~~~l~~-l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~l~~~l~~-----~~~-~~~- 380 (872)
....|... ++|.+++..........+ .++.+-..++..+..+.+..+.. ++..+...+.. .+. +..
T Consensus 82 ~~~~y~~~~lv~~l~~~~~~~~~~~~~--~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~ 159 (415)
T PF12460_consen 82 DNSWYFHRILVPRLFELALQASDQSSD--LDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSST 159 (415)
T ss_pred hHHHHHHhHHHHHHHHHHHhhcccccc--cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccc
Confidence 11222222 455555544322211111 11233344555566666655432 22223322220 000 111
Q ss_pred --hhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHH
Q 002876 381 --WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQ 458 (872)
Q Consensus 381 --~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 458 (872)
+..+. .+..+..+..+..++..-+....++..+.....+..++..|.+++.+++.+....+. .+.+..
T Consensus 160 ~~~~~~~-~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~---------~~~l~~ 229 (415)
T PF12460_consen 160 ISEQQSR-LVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD---------DDDLDE 229 (415)
T ss_pred ccccccc-HHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC---------hhhHHH
Confidence 12222 233444444444333332344556666655542455699999999999999997642 336667
Q ss_pred HHHHHHHhc-c-CChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHH
Q 002876 459 IISVLLQSM-K-DVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVR 536 (872)
Q Consensus 459 il~~l~~~l-~-d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~ 536 (872)
++..+...+ . ..+..+..+...+..+.+++- -...|....++..++..+.+ +.+...+.++++.++.
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv------~R~~~~~~~~~~~L~~lL~~-----~~~g~~aA~~f~il~~ 298 (415)
T PF12460_consen 230 FLDSLLQSISSSEDSELRPQALEILIWITKALV------MRGHPLATELLDKLLELLSS-----PELGQQAAKAFGILLS 298 (415)
T ss_pred HHHHHHhhhcccCCcchhHHHHHHHHHHHHHHH------HcCCchHHHHHHHHHHHhCC-----hhhHHHHHHHHhhHhc
Confidence 777776666 2 234445555555555555431 12235677788888888875 3456677788877776
Q ss_pred cccc--------C-----cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhh
Q 002876 537 CSTD--------E-----TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFM 603 (872)
Q Consensus 537 ~~~~--------~-----~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 603 (872)
..+. . -+.++..++|.+++.+... ++ ..+...+.+++.++...+.. ++.
T Consensus 299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~--------~~-----~~k~~yL~ALs~ll~~vP~~-----vl~ 360 (415)
T PF12460_consen 299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA--------DD-----EIKSNYLTALSHLLKNVPKS-----VLL 360 (415)
T ss_pred CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc--------Ch-----hhHHHHHHHHHHHHhhCCHH-----HHH
Confidence 6331 1 2446667777777776542 11 12345677888888877654 578
Q ss_pred HhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHh
Q 002876 604 QYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEM 656 (872)
Q Consensus 604 ~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 656 (872)
++++.++|.+++.|+.++..++..++.++..++....+.+.++++.++|.+++
T Consensus 361 ~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 361 PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988888899999999999875
No 71
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=0.00023 Score=75.08 Aligned_cols=253 Identities=14% Similarity=0.218 Sum_probs=163.6
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhc
Q 002876 219 YIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY 298 (872)
Q Consensus 219 ~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~ 298 (872)
.+-+-++.++++..+-+|+.|.-.+..+.-.||+.+.+.++.+.+ .+.|+++.|..+|...+..++...|
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~E----kLeDpDp~V~SAAV~VICELArKnP------ 213 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVE----KLEDPDPSVVSAAVSVICELARKNP------ 213 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHH----hccCCCchHHHHHHHHHHHHHhhCC------
Confidence 455566777888899999999999999999999988887766554 5589999999999988888876421
Q ss_pred CCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcC--CcchhchHHHHHhhh
Q 002876 299 GGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG--DDIVPLVMPFVEENI 376 (872)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~l~~~l~~~~ 376 (872)
.+|+ .+-|.++..|.... .+|-.. ..++.++...+ ...-..+++-+.+.+
T Consensus 214 ------------knyL-----~LAP~ffkllttSs-------NNWmLI----KiiKLF~aLtplEPRLgKKLieplt~li 265 (877)
T KOG1059|consen 214 ------------QNYL-----QLAPLFYKLLVTSS-------NNWVLI----KLLKLFAALTPLEPRLGKKLIEPITELM 265 (877)
T ss_pred ------------cccc-----cccHHHHHHHhccC-------CCeehH----HHHHHHhhccccCchhhhhhhhHHHHHH
Confidence 1222 35677777776422 347543 33443433221 112223344444444
Q ss_pred cCcchhhhHHHHHHHHHhhCCCCCCcc---hHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCc
Q 002876 377 TKQEWRQREAATYAFGSILEGPSPEKL---VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (872)
Q Consensus 377 ~~~~~~~r~aal~~l~~l~~~~~~~~~---~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 453 (872)
.+... .---+-|+.++..+.....+ ...+.-.++.+-..+ .|.++..++-++.+++.+.... +
T Consensus 266 ~sT~A--mSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fi-edsDqNLKYlgLlam~KI~ktH-----------p 331 (877)
T KOG1059|consen 266 ESTVA--MSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFI-EDSDQNLKYLGLLAMSKILKTH-----------P 331 (877)
T ss_pred HhhHH--HHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhh-hcCCccHHHHHHHHHHHHhhhC-----------H
Confidence 33220 01112344555444211122 233455667777778 8999999999999999998854 3
Q ss_pred cchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHH
Q 002876 454 GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLN 532 (872)
Q Consensus 454 ~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~ 532 (872)
.....--..++++|.| ++.+|.+|...+..++.. . .+-.|+..|+..+...+. ...|. +.+.
T Consensus 332 ~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk--------k----Nl~eIVk~LM~~~~~ae~--t~yrd---ell~ 394 (877)
T KOG1059|consen 332 KAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK--------K----NLMEIVKTLMKHVEKAEG--TNYRD---ELLT 394 (877)
T ss_pred HHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh--------h----hHHHHHHHHHHHHHhccc--hhHHH---HHHH
Confidence 4555666788899998 689999999998888653 2 667888888888876652 34443 4445
Q ss_pred HHHHcccc
Q 002876 533 EVVRCSTD 540 (872)
Q Consensus 533 ~l~~~~~~ 540 (872)
.++..+..
T Consensus 395 ~II~iCS~ 402 (877)
T KOG1059|consen 395 RIISICSQ 402 (877)
T ss_pred HHHHHhhh
Confidence 55555554
No 72
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.86 E-value=8.4e-06 Score=81.16 Aligned_cols=475 Identities=17% Similarity=0.190 Sum_probs=254.2
Q ss_pred CChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHHHhh------
Q 002876 51 KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKA-QIKSFILKTLSSPAHDARSTASQVVAKVAGIE------ 123 (872)
Q Consensus 51 ~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~------ 123 (872)
....+|+.|...+...++...+ +..-..|+.+=++.-+ .--..++-.|.|++++.|.-+-++.+.+....
T Consensus 8 ~~akvr~~al~~~~~~~~~~~~---~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~ 84 (728)
T KOG4535|consen 8 YQAKVRQGALVCFLSTIKSIEK---KVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSV 84 (728)
T ss_pred HHHHHHhhHHHHHHHHHhhhhh---hhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHH
Confidence 4567888888777665543221 1122456543222111 11112334578899999998888888876421
Q ss_pred ----cCCCCch-----------hHHHHHHHhhc-CCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCC
Q 002876 124 ----LPHKQWP-----------ELIGALLSNIH-QLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASE 187 (872)
Q Consensus 124 ----~~~~~~~-----------~l~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~ 187 (872)
.|+ .+. ++..-|+-.+. ..++.+...+++|+..++....-+.+.-..+..++..+...++ +
T Consensus 85 a~~~~~~-~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~--~ 161 (728)
T KOG4535|consen 85 AEDTSDH-AFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIR--H 161 (728)
T ss_pred HhccCCc-CCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh--c
Confidence 121 221 22222333332 2344555667888888877663344433556677777777777 7
Q ss_pred CCHHHHHHHHHHHHHhHhhc---hh------------hcc-----ChhhHH-----------------------HHHHHH
Q 002876 188 SNNDVRLAATRALYNALGFA---QA------------NFS-----NDMERD-----------------------YIMRVV 224 (872)
Q Consensus 188 ~~~~vr~~al~~l~~~~~~~---~~------------~~~-----~~~~~~-----------------------~il~~l 224 (872)
.++.||..++-.+..++... ++ +.. ..+.+. .+++.+
T Consensus 162 ~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~ 241 (728)
T KOG4535|consen 162 KDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLC 241 (728)
T ss_pred CCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeee
Confidence 78889999998887765421 10 000 000000 011110
Q ss_pred -----------------HHhhc--CCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 002876 225 -----------------CEATL--SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWS 285 (872)
Q Consensus 225 -----------------~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~ 285 (872)
...+. -....+|..+++.|..++..++ ....|+-++...+...+.+..+.+...+..++.
T Consensus 242 ~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~ 320 (728)
T KOG4535|consen 242 ISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLLE 320 (728)
T ss_pred eeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHH
Confidence 00000 0123467888888888887654 234555566666666677888888888777776
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHH-HHHHHh-cccCCcccCCccchHhHHHHHHHHHHHHHc---
Q 002876 286 SVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPL-LLETLL-KQEEDQDQDEGAWNIAMAGGTCLGLVARTV--- 360 (872)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-l~~~l~-~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~--- 360 (872)
++.... ..++..+.... .+... +...+. ...++.-.|..-.+....+++++..++..-
T Consensus 321 ~lg~~l---v~~~~P~~~k~--------------~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~ 383 (728)
T KOG4535|consen 321 ELGTGL---IQQYKPDSTKA--------------PDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN 383 (728)
T ss_pred HHHHHH---hhhcCCCcccc--------------hhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC
Confidence 665432 11111000000 00011 111111 111111111112355555556665554432
Q ss_pred -CCcchhchHHHHHhhhc-CcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 002876 361 -GDDIVPLVMPFVEENIT-KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMF 438 (872)
Q Consensus 361 -~~~~~~~l~~~l~~~~~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~ 438 (872)
++.- ....+.+...++ +++--+|-+|+.+.+...-..+......+..+....+...+ .|..-.+|..++|++|.+.
T Consensus 384 lpn~~-~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnIT 461 (728)
T KOG4535|consen 384 LPNDR-QTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNIT 461 (728)
T ss_pred CCCcc-hhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhhH
Confidence 2211 123333333333 45566778888877766544332333445677778888888 8989999999999999998
Q ss_pred hhccCCCCCCcc-cCccchHHHHHHHHHhc----cCChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhh
Q 002876 439 EFLHGSTLETPI-INQGNCQQIISVLLQSM----KDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVT 513 (872)
Q Consensus 439 ~~~~~~~~~~~~-~~~~~~~~il~~l~~~l----~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l 513 (872)
..+..... .+. ....+....+..++..- .|+.+|+.+|..+|+++...+. ....+-+..+++.-+..+
T Consensus 462 dAL~~~~P-s~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq------~i~~~~~~e~~~~~~~~l 534 (728)
T KOG4535|consen 462 DALIVNMP-TPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQ------PIEKPTFAEIIEESIQAL 534 (728)
T ss_pred HHHHcCCC-CchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH------HhhhccHHHHHHHHHHhc
Confidence 86542110 000 11122222333333221 2468999999999999987652 222233334443333222
Q ss_pred cc----CCchhhhhHHHHHHHHHHHHHcccc--CcHHHHHHHHHHHHHHHHHH
Q 002876 514 HR----EDAGESRLRTAAYETLNEVVRCSTD--ETAPMVMQLVPLIMMELHQT 560 (872)
Q Consensus 514 ~~----~~~~~~~v~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~ 560 (872)
.. +. .-.|+.+++.+++.+.+.-.- ...++...+++.++..+.++
T Consensus 535 ~~~v~~~~--~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~ 585 (728)
T KOG4535|consen 535 ISTVLTEA--AMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSC 585 (728)
T ss_pred ccceeccc--ccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHh
Confidence 11 11 456899999999999987543 34556777777777766554
No 73
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.85 E-value=0.00035 Score=75.98 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=120.8
Q ss_pred cHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccc-hHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHH
Q 002876 688 YCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN-FEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNG 766 (872)
Q Consensus 688 ~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~-~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~ 766 (872)
+..+++|.+...+... ....|..-+.+++.+....+.. ..|.++.++|.|+++++.. | ..+|-.
T Consensus 864 fF~~ivP~l~~~~~t~--~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~------D-------~~v~vs 928 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETA--PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP------D-------VIVRVS 928 (1030)
T ss_pred HHHhhHHHHHHHhccC--CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC------c-------cchhhh
Confidence 4567899999998854 5678899999999998877654 5689999999999999876 3 245666
Q ss_pred HHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHHHHhcCC-ccccccCchHHHHHH
Q 002876 767 ILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMD-DVVTKTAIGVLGDLADTLGSN-AGPLIQQSVSSKDFL 844 (872)
Q Consensus 767 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~-~~v~~~a~~~l~~i~~~~g~~-~~~~~~~~~~v~~~l 844 (872)
+++++..++.. .+.....|+.++++.+..+-.+++.+ ..||..|+.|++.+.+..+.. ..+|-+. |..-|
T Consensus 929 tl~~i~~~l~~-----~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~---Vl~al 1000 (1030)
T KOG1967|consen 929 TLRTIPMLLTE-----SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPL---VLRAL 1000 (1030)
T ss_pred HhhhhhHHHHh-----ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHH---HHHHh
Confidence 77777766654 34556679999999999887765543 789999999999999966544 5666665 77777
Q ss_pred HHHhcCCChhHHHHHHHHHHH
Q 002876 845 NECLSSDDHMIKESAEWAKLA 865 (872)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~ 865 (872)
..+.+++...+|+-|.-+|+.
T Consensus 1001 ~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 1001 IKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred hhccCcHHHHHHHHHHHHhhh
Confidence 778888888888888877764
No 74
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.84 E-value=0.00017 Score=73.74 Aligned_cols=479 Identities=12% Similarity=0.114 Sum_probs=256.6
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCCh-hHHHHHHHHHHHhhhhcc
Q 002876 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPP-HTKQATLETLGYICEEVS 163 (872)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~-~~r~~al~~l~~i~~~~~ 163 (872)
.|+.....+.=.+.+++++.++.+|...=.++..+.... +.---....+++-++.+.+ .+|-.|++.|.+++..-
T Consensus 58 f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~t---edvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~- 133 (898)
T COG5240 58 FPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLT---EDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGE- 133 (898)
T ss_pred chhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcc---hhhhHHHHHHHHhhccCCccccccHHHHHHHHhcCcc-
Confidence 455566677778999999999999977666665555432 1111223345555665544 67888888887776532
Q ss_pred ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhH-HHHHHHHHHhhcC------------
Q 002876 164 SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMER-DYIMRVVCEATLS------------ 230 (872)
Q Consensus 164 ~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~-~~il~~l~~~~~~------------ 230 (872)
. ...++.+ +.+++- ++.+.+|.+|+-.-+.+.. ..+....-| +..-..+..+.+.
T Consensus 134 --t--v~~~er~---l~~a~V--s~~~a~~saalv~aYhLlp---~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn 201 (898)
T COG5240 134 --T--VYDFERY---LNQAFV--STSMARRSAALVVAYHLLP---NNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPN 201 (898)
T ss_pred --h--hhhHHHH---hhhhcc--ccchhhhhhHHHHhhhhcc---ccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCC
Confidence 1 1233333 334444 6788888888866666442 222111101 1112222222111
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 002876 231 PEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDE-EPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIP 309 (872)
Q Consensus 231 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (872)
.++-.+-.|+..|..+-++..- .+..+++.+ .... -....+.+.....+.+ +..+
T Consensus 202 ~~~isqYHalGlLyq~kr~dkm----a~lklv~hf----~~n~smknq~a~V~lvr~~~~----ll~~------------ 257 (898)
T COG5240 202 GNPISQYHALGLLYQSKRTDKM----AQLKLVEHF----RGNASMKNQLAGVLLVRATVE----LLKE------------ 257 (898)
T ss_pred CChHHHHHHHHHHHHHhcccHH----HHHHHHHHh----hcccccccchhheehHHHHHH----HHHh------------
Confidence 1122222333333332221110 011222222 2111 0111111111111111 1111
Q ss_pred hHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHc-CCcchhchHHHHHhhhcCcchhhhHHHH
Q 002876 310 CFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-GDDIVPLVMPFVEENITKQEWRQREAAT 388 (872)
Q Consensus 310 ~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~~~~~~~~~r~aal 388 (872)
-.+.+..+.|.|-.|++..-| .+...++.++..++... |.+.+...+..+...++++....|.+|+
T Consensus 258 ----n~q~~~q~rpfL~~wls~k~e---------mV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~ 324 (898)
T COG5240 258 ----NSQALLQLRPFLNSWLSDKFE---------MVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAM 324 (898)
T ss_pred ----ChHHHHHHHHHHHHHhcCcch---------hhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 135556678888888864211 33444556666666654 7778888888888889999889999999
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhcc
Q 002876 389 YAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK 468 (872)
Q Consensus 389 ~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (872)
..+..++-... ... ...-+.+-..+ +|.+..+ +.+++..+.+.. ..+.++.++..+...+.
T Consensus 325 Riln~lam~~P-~kv----~vcN~evEsLI-sd~Nr~I---styAITtLLKTG----------t~e~idrLv~~I~sfvh 385 (898)
T COG5240 325 RILNQLAMKYP-QKV----SVCNKEVESLI-SDENRTI---STYAITTLLKTG----------TEETIDRLVNLIPSFVH 385 (898)
T ss_pred HHHHHHHhhCC-cee----eecChhHHHHh-hcccccc---hHHHHHHHHHcC----------chhhHHHHHHHHHHHHH
Confidence 99999987653 221 11223344555 7776444 445555555532 23455566666666555
Q ss_pred C-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHH
Q 002876 469 D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVM 547 (872)
Q Consensus 469 d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~ 547 (872)
| +...+..+..++..++-.++ ..- ..++..|...+.+.. ....+..+.+++..+++..|+.- +
T Consensus 386 D~SD~FKiI~ida~rsLsl~Fp------~k~----~s~l~FL~~~L~~eG--g~eFK~~~Vdaisd~~~~~p~sk----E 449 (898)
T COG5240 386 DMSDGFKIIAIDALRSLSLLFP------SKK----LSYLDFLGSSLLQEG--GLEFKKYMVDAISDAMENDPDSK----E 449 (898)
T ss_pred hhccCceEEeHHHHHHHHhhCc------HHH----HHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHhhCchHH----H
Confidence 4 33333345667777766663 222 233444444444432 45678889999999998876532 2
Q ss_pred HHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhH
Q 002876 548 QLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEE 627 (872)
Q Consensus 548 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~ 627 (872)
..+..++..++.+ + .-..+...|+.+....+... .=..|...+++.++- ++..+|..
T Consensus 450 raLe~LC~fIEDc-----------e----y~~I~vrIL~iLG~EgP~a~----~P~~yvrhIyNR~iL----EN~ivRsa 506 (898)
T COG5240 450 RALEVLCTFIEDC-----------E----YHQITVRILGILGREGPRAK----TPGKYVRHIYNRLIL----ENNIVRSA 506 (898)
T ss_pred HHHHHHHHHHhhc-----------c----hhHHHHHHHHHhcccCCCCC----CcchHHHHHHHHHHH----hhhHHHHH
Confidence 2334444444332 1 11123444444433322221 112466666666642 45679999
Q ss_pred HHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002876 628 AMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDL 677 (872)
Q Consensus 628 a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l 677 (872)
|+.||++++......+. ...+...+.+++++.++ ++|..|.-++..+
T Consensus 507 Av~aLskf~ln~~d~~~--~~sv~~~lkRclnD~Dd-eVRdrAsf~l~~~ 553 (898)
T COG5240 507 AVQALSKFALNISDVVS--PQSVENALKRCLNDQDD-EVRDRASFLLRNM 553 (898)
T ss_pred HHHHHHHhccCcccccc--HHHHHHHHHHHhhcccH-HHHHHHHHHHHhh
Confidence 99999999876655433 23456667777776655 8998877766654
No 75
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.84 E-value=2.1e-06 Score=85.34 Aligned_cols=518 Identities=15% Similarity=0.123 Sum_probs=260.7
Q ss_pred ChHHHHHHHHHHHHHHHhh----cCCCCchhHHHH---------HHHhhcCCChhHHHHHHHHHHHhhhhc---------
Q 002876 105 AHDARSTASQVVAKVAGIE----LPHKQWPELIGA---------LLSNIHQLPPHTKQATLETLGYICEEV--------- 162 (872)
Q Consensus 105 ~~~vr~~~a~~l~~i~~~~----~~~~~~~~l~~~---------l~~~l~~~~~~~r~~al~~l~~i~~~~--------- 162 (872)
..+||..+-.++....+.. +. ..|.-++|. +.-.++++++..|..|++++..+....
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~y-gyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~ 87 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLY-GYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAED 87 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhh-ceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 4678888888877776543 11 478777765 334567788899999999998876643
Q ss_pred -cccccchhh-------HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHH
Q 002876 163 -SSDAVEQDH-------VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVK 234 (872)
Q Consensus 163 -~~~~l~~~~-------~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 234 (872)
++..| ++. ..+....++..+.. +.++.+-...++|+..++...+-.-..-...-.+.+.+-.++++.|+.
T Consensus 88 ~~~~~f-tpf~v~~a~si~~~~r~l~~~l~~-e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~ 165 (728)
T KOG4535|consen 88 TSDHAF-TPFSVMIACSIRELHRCLLLALVA-ESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVN 165 (728)
T ss_pred cCCcCC-CchHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 12223 222 12222333434432 667788888999999988644321111111234566667788899999
Q ss_pred HHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH-----HhcC-C--------
Q 002876 235 IRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDIL-----EEYG-G-------- 300 (872)
Q Consensus 235 ~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~-----~~~~-~-------- 300 (872)
++..++..+..++..... .|.+...++.-...-+..-+ ....-+.|..++....... ++.. .
T Consensus 166 v~vs~l~~~~~~v~t~~~--~pei~~~~~~~~s~~n~~~~--h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~ 241 (728)
T KOG4535|consen 166 VRVSSLTLLGAIVSTHAP--LPEVQLLLQQPCSSSNSATP--HLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLC 241 (728)
T ss_pred hhhHHHHHHHHHHhcCCC--CHHHHHHhcCCCccccccCC--CCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeee
Confidence 999999999998876421 12222222111000000000 0011123333332111000 0000 0
Q ss_pred ------CCCC------------CCCCc------hHh----------HHHhhhhhHHHHHHHHHhcccCCcccCCccchHh
Q 002876 301 ------DFSG------------DSDIP------CFY----------FIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIA 346 (872)
Q Consensus 301 ------~~~~------------~~~~~------~~~----------~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r 346 (872)
..++ ....| +.. +.+.++-.+..++...+. +.+ . .+.
T Consensus 242 ~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~----~~~--p---~~~ 312 (728)
T KOG4535|consen 242 ISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMG----EAD--P---SIQ 312 (728)
T ss_pred eeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----CCC--h---HHH
Confidence 0000 00011 111 112222222222222221 111 1 223
Q ss_pred HHHHHHHHHHHHHcCCcchhc-----hH--HH--HH-------hhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHH
Q 002876 347 MAGGTCLGLVARTVGDDIVPL-----VM--PF--VE-------ENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIA 410 (872)
Q Consensus 347 ~~a~~~l~~l~~~~~~~~~~~-----l~--~~--l~-------~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i 410 (872)
..+..+++.+....+....|. +. ++ +. ..-++......-+.+.++..+..... ..+..--.+.
T Consensus 313 l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f-~~lpn~~~T~ 391 (728)
T KOG4535|consen 313 LHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAF-SNLPNDRQTL 391 (728)
T ss_pred HHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhh-cCCCCcchhh
Confidence 345667777665443222111 00 01 00 11112224445556666666654331 2232222344
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcc
Q 002876 411 LNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFE 489 (872)
Q Consensus 411 ~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~ 489 (872)
.+.+..+...+++..+|.+|.++++.+.-+-.. .....+.......++..+.| .-.+|.+++|+++++.+.+-
T Consensus 392 ~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~l------r~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~ 465 (728)
T KOG4535|consen 392 CITFLLGCNDSKNRLVKAAASRALGVYVLHPCL------RQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALI 465 (728)
T ss_pred hHHHHhcccchHHHHHHHHHHhhceeEEeccch------hhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHH
Confidence 555555651345667888888888766654321 11233555666777777777 56889999999999998765
Q ss_pred cCCCC-CCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCCh
Q 002876 490 DAISP-SSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSS 568 (872)
Q Consensus 490 ~~~~~-~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 568 (872)
...-+ .+.-.......+..++..-...+....+|+..++++++.+.+....-..+-+..++..-+..+.....
T Consensus 466 ~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~------ 539 (728)
T KOG4535|consen 466 VNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVL------ 539 (728)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhccccee------
Confidence 43100 11222233344444444333322226789999999999888765432222233333332222211110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHhhhhhHhhh
Q 002876 569 DEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI-RSATAHEEAMLAIGALAYATGQDFLKYM 647 (872)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 647 (872)
-+....++=.+|.+++.++..-.-. -.-.+.++.+++.+..++.+ .|-.+|..|..+|..-.+.. ++...+
T Consensus 540 --~~~~~kV~WNaCya~gNLfkn~a~~----lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re--~~~d~~ 611 (728)
T KOG4535|consen 540 --TEAAMKVRWNACYAMGNLFKNPALP----LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKRE--QYGDQY 611 (728)
T ss_pred --cccccccchHHHHHHHHhhcCcccc----ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcc--cchhHH
Confidence 0111123445888888886532110 00125788899999988876 47789988877776655433 333445
Q ss_pred HHHHHHHHhhhc
Q 002876 648 PEFYKYVEMGLQ 659 (872)
Q Consensus 648 ~~i~~~l~~~l~ 659 (872)
+-.+..++..|.
T Consensus 612 ~Lsw~~lv~aLi 623 (728)
T KOG4535|consen 612 ALSWNALVTALQ 623 (728)
T ss_pred hHHHHHHHHHHH
Confidence 555555555554
No 76
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=4.1e-05 Score=80.47 Aligned_cols=339 Identities=13% Similarity=0.128 Sum_probs=198.8
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHH
Q 002876 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (872)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~ 486 (872)
..+.+-++..| ++..|.+|..|..++-+++..+| +.+.+.+|.|.+.|.| +|.|+.+|...++.+++
T Consensus 143 RDLa~Dv~tLL-~sskpYvRKkAIl~lykvFLkYP-----------eAlr~~FprL~EkLeDpDp~V~SAAV~VICELAr 210 (877)
T KOG1059|consen 143 RDLADDVFTLL-NSSKPYVRKKAILLLYKVFLKYP-----------EALRPCFPRLVEKLEDPDPSVVSAAVSVICELAR 210 (877)
T ss_pred HHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHhhh-----------HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence 44556677788 99999999999999999888764 4667889999999997 69999999888888877
Q ss_pred hcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcC
Q 002876 487 GFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKL 566 (872)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 566 (872)
.- +....+..|.++..+. ...+ ++ +....+..++.+...-| ..-..+++++.+.+.....
T Consensus 211 Kn------PknyL~LAP~ffkllt----tSsN-NW-mLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~A---- 270 (877)
T KOG1059|consen 211 KN------PQNYLQLAPLFYKLLV----TSSN-NW-VLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVA---- 270 (877)
T ss_pred hC------CcccccccHHHHHHHh----ccCC-Ce-ehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHH----
Confidence 53 3333444444444333 3331 33 33344555554444332 2234566777776655321
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH-hCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHh
Q 002876 567 SSDEREKQNEIQGLLCGCLQVIIQK-LGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLK 645 (872)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~l~~l~~~-l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 645 (872)
...+.+|+..++.. +... ..+ -..-+.-.++.+..++.+.++.++=-.+.+++.++..-+.....
T Consensus 271 -----------mSLlYECvNTVVa~s~s~g--~~d-~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa 336 (877)
T KOG1059|consen 271 -----------MSLLYECVNTVVAVSMSSG--MSD-HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA 336 (877)
T ss_pred -----------HHHHHHHHHHheeehhccC--CCC-cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH
Confidence 22467777777654 1111 000 12234556777888888889999888899999998766554443
Q ss_pred hhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhc
Q 002876 646 YMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG 725 (872)
Q Consensus 646 ~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~ 725 (872)
+ -..++++|.+. +..+|..|+.++..++..-. +..|+..|+..+...+ ....|...+.-+-.||....
T Consensus 337 ~----kdlIlrcL~Dk-D~SIRlrALdLl~gmVskkN------l~eIVk~LM~~~~~ae-~t~yrdell~~II~iCS~sn 404 (877)
T KOG1059|consen 337 H----KDLILRCLDDK-DESIRLRALDLLYGMVSKKN------LMEIVKTLMKHVEKAE-GTNYRDELLTRIISICSQSN 404 (877)
T ss_pred h----HHHHHHHhccC-CchhHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHhhhhh
Confidence 3 34455666654 55899999999988876432 3455555555544442 23455555555555554332
Q ss_pred ----cchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHH-
Q 002876 726 ----ENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDS- 800 (872)
Q Consensus 726 ----~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~- 800 (872)
.+|.=|+. .+.+...-.. . +.-..+-++.+.. + .-+..++|+....+..+..
T Consensus 405 Y~~ItdFEWYls----VlveLa~l~~-----~----~~G~~I~eQi~Dv--------~--iRV~~iR~fsV~~m~~Ll~~ 461 (877)
T KOG1059|consen 405 YQYITDFEWYLS----VLVELARLEG-----T----RHGSLIAEQIIDV--------A--IRVPSIRPFSVSQMSALLDD 461 (877)
T ss_pred hhhhhhHHHHHH----HHHHHHhccc-----c----chhhHHHHHHHHH--------h--eechhhhHhHHHHHHHHHhc
Confidence 23443333 3333322211 0 0111122222221 1 1234577776655544433
Q ss_pred -Hh----cCCCCCHHHHHHHHHHHHHHHHHhc
Q 002876 801 -LY----MEKDMDDVVTKTAIGVLGDLADTLG 827 (872)
Q Consensus 801 -~l----~~~~~~~~v~~~a~~~l~~i~~~~g 827 (872)
.+ ..+..-.+|..+|..++|+-+....
T Consensus 462 ~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ve 493 (877)
T KOG1059|consen 462 PLLAGSAQINSQLCEVLYAAAWILGEYSEFVE 493 (877)
T ss_pred hhhccchhhccchhHHHHHHHHHHHHHHHHhh
Confidence 11 1112345788899999998888765
No 77
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.78 E-value=5.2e-06 Score=88.28 Aligned_cols=380 Identities=16% Similarity=0.150 Sum_probs=215.6
Q ss_pred HHHHHhhcCCCh---hHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhh
Q 002876 134 GALLSNIHQLPP---HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN 210 (872)
Q Consensus 134 ~~l~~~l~~~~~---~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (872)
|.++..+.+.+. ......+.++..++.. ++.+ ......++..+.....+ ..+.+.-..++.++..++......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~-~~~~~~ll~kl~~~~~~-~~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTS--PQIL-ETLSIRLLNKLSIVCQS-ESSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHH-HHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHhcccc
Confidence 556666665543 4556678888877765 2333 33344555555544443 346777788888888877644332
Q ss_pred c---cChhhHH-HHHHHHHHhh----c-CC--CHHHHHHHHHHHHHHHHHhHHhhH-hhHHHHHHHHHHH-----HhcCC
Q 002876 211 F---SNDMERD-YIMRVVCEAT----L-SP--EVKIRQAAFECLVAISSTYYEKLA-PYIQDIFNITAKA-----VREDE 273 (872)
Q Consensus 211 ~---~~~~~~~-~il~~l~~~~----~-~~--~~~~r~~~~~~l~~l~~~~~~~~~-~~~~~l~~~~~~~-----~~~~~ 273 (872)
. ....+.+ .+++.++... . +. ++.+-..+...+..+++..+..-. ..+..++..+... +....
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~ 157 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSS 157 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccc
Confidence 2 1111112 1444444432 1 11 234444455555555554332211 1223333333300 00000
Q ss_pred h---hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHH
Q 002876 274 E---PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGG 350 (872)
Q Consensus 274 ~---~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~ 350 (872)
. +.....+-.+..+...- +.++. -+....++..++......++ ...|..+.
T Consensus 158 ~~~~~~~~~~~~l~~~il~~l-------------~~~~~-----~~~~~~ll~~l~~~~~~~~~--------~~~~~~~~ 211 (415)
T PF12460_consen 158 STISEQQSRLVILFSAILCSL-------------RKDVS-----LPDLEELLQSLLNLALSSED--------EFSRLAAL 211 (415)
T ss_pred cccccccccHHHHHHHHHHcC-------------CcccC-----ccCHHHHHHHHHHHHHcCCC--------hHHHHHHH
Confidence 0 01111111111111100 00000 01222244444444332111 36688888
Q ss_pred HHHHHHHHHcC-CcchhchHHHHHhhh-cCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHH
Q 002876 351 TCLGLVARTVG-DDIVPLVMPFVEENI-TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKD 428 (872)
Q Consensus 351 ~~l~~l~~~~~-~~~~~~l~~~l~~~~-~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~ 428 (872)
.++..+...++ +..+..++..+.... .......|..++..+..++.+.- -...+....++..+...+ .| +.+..
T Consensus 212 ~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv-~R~~~~~~~~~~~L~~lL-~~--~~~g~ 287 (415)
T PF12460_consen 212 QLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALV-MRGHPLATELLDKLLELL-SS--PELGQ 287 (415)
T ss_pred HHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHh-CC--hhhHH
Confidence 99999998874 334444554444444 33344556666666666655542 112244466677788888 55 77888
Q ss_pred HHHHHHHHhhhhccCCC---CC---CcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchh
Q 002876 429 TTAWTLGRMFEFLHGST---LE---TPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPF 501 (872)
Q Consensus 429 ~a~~~l~~l~~~~~~~~---~~---~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~ 501 (872)
.++.+++-+....+.-. .. ...+.+.++..++|.+++...+ +...+.....||..++++.+ ...+.++
T Consensus 288 ~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP-----~~vl~~~ 362 (415)
T PF12460_consen 288 QAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP-----KSVLLPE 362 (415)
T ss_pred HHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC-----HHHHHHH
Confidence 88888888777532100 00 0123466788889999888876 44578888899999999864 6789999
Q ss_pred HHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHH
Q 002876 502 FQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMM 555 (872)
Q Consensus 502 l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~ 555 (872)
++.++|.+++.+..+ +..++..+++++..++...+..+.+++..++|.+++
T Consensus 363 l~~LlPLLlqsL~~~---~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 363 LPTLLPLLLQSLSLP---DADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 999999999999766 467899999999999999887788888888888764
No 78
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.78 E-value=0.00099 Score=76.57 Aligned_cols=406 Identities=12% Similarity=0.087 Sum_probs=213.3
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCC-CCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchh
Q 002876 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH-KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD 170 (872)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~ 170 (872)
.....++..+.++...+|..|..|++.++..+ |. -.-+++...+-..+.++...+|++|+..++.++-.. + .
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~D-p~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~-----e 888 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEAD-PSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-P-----E 888 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcC-hHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-H-----H
Confidence 34456777888788999999999999999887 42 245788888888889989999999999999876554 3 4
Q ss_pred hHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q 002876 171 HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 250 (872)
Q Consensus 171 ~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 250 (872)
...+.+..+...+. |+...||+.+++.+..++.-.++.. ....+.--+..-.+|++..++.-+++++..+.-.-
T Consensus 889 ~~~qyY~~i~erIl--DtgvsVRKRvIKIlrdic~e~pdf~----~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 889 LIFQYYDQIIERIL--DTGVSVRKRVIKILRDICEETPDFS----KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred HHHHHHHHHHhhcC--CCchhHHHHHHHHHHHHHHhCCChh----hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccC
Confidence 45667777777777 8999999999999999876444321 11222222233345555558888888887754221
Q ss_pred HHh------hHhhHHHHHH---HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhH
Q 002876 251 YEK------LAPYIQDIFN---ITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVL 321 (872)
Q Consensus 251 ~~~------~~~~~~~l~~---~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 321 (872)
... ....+...+. .....+.+..+......+..-......+ + ........+...
T Consensus 963 ~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~------------~-----~~~v~~~~v~~~ 1025 (1692)
T KOG1020|consen 963 VPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKE------------S-----VKPVALAKVTHV 1025 (1692)
T ss_pred CCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhh------------h-----hhHHHHhhcchH
Confidence 110 1111111111 1111111222221111111100000000 0 001112222222
Q ss_pred HH----HHHHHHhcccCCcccCCccchHhH-HHHHHHHHHHHHcCCcch----hchHHHHHhhhcC-cchhhhHHHHHHH
Q 002876 322 VP----LLLETLLKQEEDQDQDEGAWNIAM-AGGTCLGLVARTVGDDIV----PLVMPFVEENITK-QEWRQREAATYAF 391 (872)
Q Consensus 322 ~~----~l~~~l~~~~~d~~~~~~~~~~r~-~a~~~l~~l~~~~~~~~~----~~l~~~l~~~~~~-~~~~~r~aal~~l 391 (872)
+. .+...+...+.+++. ++..+.|. +....|..++...|.-+. -.+.|++....+. .+...-+..+..|
T Consensus 1026 ~~L~~~cl~~~i~ev~~~~~~-~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Il 1104 (1692)
T KOG1020|consen 1026 LNLLTHCLVEKISEVESDDMN-EEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQIL 1104 (1692)
T ss_pred HHHHHHHHHHHHHhhhhHhhh-cccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHH
Confidence 33 333333322211111 12224443 334566677776664443 3445555544322 1233333344444
Q ss_pred HHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhcc---
Q 002876 392 GSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK--- 468 (872)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--- 468 (872)
..+..... ..-..++..+=+.+.+.+ --.+......|..|++.++.+... .......++..+++.+.
T Consensus 1105 e~VlPlv~-~~sesfL~sLEe~L~~~i-~k~g~a~V~~~vsCl~sl~~k~~~--------~~~~v~~cf~~~~k~le~~k 1174 (1692)
T KOG1020|consen 1105 ECVLPLVA-NPSESFLASLEEDLLKRI-VKMGMATVVEAVSCLGSLATKRTD--------GAKVVKACFSCYLKLLEVIK 1174 (1692)
T ss_pred HHHhhhhc-cchHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHhhhcc--------chHHHHHHHHHHHHHHHHHH
Confidence 44443331 222334455555566666 445556667778888888886431 22344455555444443
Q ss_pred ----CC-----hhHHHHHHHHHHHHHHhcccC--CCCCCC----CchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHH
Q 002876 469 ----DV-----PNVAEKACGALYFLAQGFEDA--ISPSSP----LTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNE 533 (872)
Q Consensus 469 ----d~-----~~v~~~a~~al~~l~~~~~~~--~~~~~~----l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~ 533 (872)
++ ...-.+...+++-|++.+.-. ...+.. .....+.++..|.-..... +..+|..++.+++.
T Consensus 1175 ~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~---~~~lR~~al~~Lg~ 1251 (1692)
T KOG1020|consen 1175 SSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK---DGELRRKALINLGF 1251 (1692)
T ss_pred hccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHH
Confidence 12 133456777888888854221 001111 1122233333333333332 46789999999998
Q ss_pred HHHccccC
Q 002876 534 VVRCSTDE 541 (872)
Q Consensus 534 l~~~~~~~ 541 (872)
+.-..+.-
T Consensus 1252 ~ci~hp~l 1259 (1692)
T KOG1020|consen 1252 ICIQHPSL 1259 (1692)
T ss_pred HHhhCchh
Confidence 88777654
No 79
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.71 E-value=3e-06 Score=93.73 Aligned_cols=287 Identities=15% Similarity=0.162 Sum_probs=188.4
Q ss_pred CHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhH---h-hHHHHHHH
Q 002876 189 NNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA---P-YIQDIFNI 264 (872)
Q Consensus 189 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~---~-~~~~l~~~ 264 (872)
..+.|.+|++.+..+..+..+ +.-.+.+++.+..++.|+..+||..|+.+|..++....+.-. . +.+.++|-
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 567889999999887765433 223478999999999999999999999999998865432100 1 12345555
Q ss_pred HHHHHhc-CChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHH-HhcccCCcccCCcc
Q 002876 265 TAKAVRE-DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLET-LLKQEEDQDQDEGA 342 (872)
Q Consensus 265 ~~~~~~~-~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-l~~~~~d~~~~~~~ 342 (872)
+-....| ....+|..-...+..+++...... .. ...+-.. |-+..+++...+..
T Consensus 512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFl-------------------e~-----~q~~~~~g~~n~~nset~~~~~ 567 (1431)
T KOG1240|consen 512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFL-------------------EL-----TQELRQAGMLNDPNSETAPEQN 567 (1431)
T ss_pred hHhhhccCccceehhhHHhhHHHHHHHHHHHH-------------------HH-----HHHHHhcccccCcccccccccc
Confidence 5555555 444566666666777776432211 10 0000000 11111110011111
Q ss_pred chHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCC
Q 002876 343 WNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP 422 (872)
Q Consensus 343 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~ 422 (872)
++.. .... ...+-..+...+.++...+|++-+..+..++-.+++..-. +.+++++...| +|.
T Consensus 568 ~~~~--~~~L------------~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksN---D~iLshLiTfL-NDk 629 (1431)
T KOG1240|consen 568 YNTE--LQAL------------HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSN---DVILSHLITFL-NDK 629 (1431)
T ss_pred cchH--HHHH------------HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccc---cchHHHHHHHh-cCc
Confidence 1111 1111 1223334556677777889999888888877666533222 45688999999 999
Q ss_pred cHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchh
Q 002876 423 NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPF 501 (872)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~ 501 (872)
+|..|.+....+.-++-..+. ...-+-++|.+.++|.| .+.|...|..++..+++. .-.-.++
T Consensus 630 Dw~LR~aFfdsI~gvsi~VG~---------rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-------~ll~K~~ 693 (1431)
T KOG1240|consen 630 DWRLRGAFFDSIVGVSIFVGW---------RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL-------GLLRKPA 693 (1431)
T ss_pred cHHHHHHHHhhccceEEEEee---------eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh-------cccchHH
Confidence 999999988887766665541 22344688999999998 688999999999999985 4455678
Q ss_pred HHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHcccc
Q 002876 502 FQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (872)
Q Consensus 502 l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~ 540 (872)
.-+|++.+...+..+ +.-+|..++..|....+..+.
T Consensus 694 v~~i~~~v~PlL~hP---N~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 694 VKDILQDVLPLLCHP---NLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HHHHHHhhhhheeCc---hHHHHHHHHHHHHHHHhhhhh
Confidence 899999999999887 567999999999988888774
No 80
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.69 E-value=1.2e-06 Score=85.51 Aligned_cols=184 Identities=14% Similarity=0.185 Sum_probs=126.8
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHh-----HHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 002876 228 TLSPEVKIRQAAFECLVAISSTY-----YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDF 302 (872)
Q Consensus 228 ~~~~~~~~r~~~~~~l~~l~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~ 302 (872)
..+.+|+.|..++..|..++... ++.+.+.+..++..+...+.+....+...|+.++..++...
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l----------- 84 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL----------- 84 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH-----------
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----------
Confidence 35679999999999999999876 22333444555566666677777778899999999888643
Q ss_pred CCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhch-HHHHHhhhcCcch
Q 002876 303 SGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLV-MPFVEENITKQEW 381 (872)
Q Consensus 303 ~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~ 381 (872)
...+.++++.++|.++..+... .-.++..|..+|..+....+ ..+.+ .+.+.....+.+|
T Consensus 85 --------~~~~~~~~~~~l~~Ll~~~~~~---------~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~ 145 (228)
T PF12348_consen 85 --------GSHFEPYADILLPPLLKKLGDS---------KKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNP 145 (228)
T ss_dssp --------GGGGHHHHHHHHHHHHHGGG------------HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-H
T ss_pred --------hHhHHHHHHHHHHHHHHHHccc---------cHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCH
Confidence 1346677888888888876531 12578889999999988766 22334 7778888889999
Q ss_pred hhhHHHHHHHHHhhCCCC--CCcchH--HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 002876 382 RQREAATYAFGSILEGPS--PEKLVP--LVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (872)
Q Consensus 382 ~~r~aal~~l~~l~~~~~--~~~~~~--~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
.+|..++.++..+....+ ...+.. .++.+.+.+...+ +|+++.||.+|-.++..+...++
T Consensus 146 ~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l-~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 146 QVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLL-SDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHH-TSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHCC
Confidence 999999999999988774 233332 3578999999999 99999999999999999988875
No 81
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.0011 Score=70.87 Aligned_cols=243 Identities=14% Similarity=0.139 Sum_probs=166.3
Q ss_pred hhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccc---cCcHHHHH
Q 002876 471 PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST---DETAPMVM 547 (872)
Q Consensus 471 ~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~---~~~~~~~~ 547 (872)
-.+|.+.+|.++..+.. ......-+..+..+++.+++.+ |--++-.+..++..+++... +.+.||++
T Consensus 501 RiiRRRVa~ilg~Wvsv--------q~~~e~k~l~Y~a~lnLL~d~~--D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~le 570 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVSV--------QQKLELKPLLYCAFLNLLQDQN--DLVVRLTTARTLKLVVDDWNFSEDSFLPYLE 570 (978)
T ss_pred hHHHHHHHHHHhhhhhe--------echHhHHHHHHHHHHHhcCccc--cceeehHHHHHHHHhhhhccCChhhhhhhHH
Confidence 35688899999998763 2333445667888888888775 56678888999999888765 46888998
Q ss_pred HHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcc--ccchh
Q 002876 548 QLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR--SATAH 625 (872)
Q Consensus 548 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~~ 625 (872)
.++..+++.+..... . +.+..+++.++.++.+.++. +.|++..+++.+-.+.... .+-+|
T Consensus 571 nlf~~lfkll~~~~e-----~-------Dtk~~VL~~ls~lI~r~~e~------I~P~~~~ivq~lp~LWe~s~~e~lLr 632 (978)
T KOG1993|consen 571 NLFVLLFKLLKAVEE-----C-------DTKTSVLNLLSTLIERVSEH------IAPYASTIVQYLPLLWEESEEEPLLR 632 (978)
T ss_pred HHHHHHHHHHHHHhh-----h-------hhHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHhhhccCcHHH
Confidence 888888888765421 1 23446889999999888876 7788888777666655543 34478
Q ss_pred hHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhc--CCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCC
Q 002876 626 EEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQ--NFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSN 703 (872)
Q Consensus 626 ~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 703 (872)
.+.+.++..++.++|.+-.++.+.++|.+....+ +++..-....+..+.+....+.+ .+.|-+-.+++.+...+...
T Consensus 633 ~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~-~l~p~ll~L~p~l~~~iE~s 711 (978)
T KOG1993|consen 633 CALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQ-KLTPELLLLFPHLLYIIEQS 711 (978)
T ss_pred HHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhccc-ccCHHHHHHHHHHHHHHHhh
Confidence 8889999999999998888888888887765543 22222334566777777766653 46666667777777777654
Q ss_pred CCCCCCchhHHHHHHHHHHHhccc-hHHhHHHHHHHHHHHHhh
Q 002876 704 QLHRSVKPPIFSCFGDIALAIGEN-FEKYLMYAMPMLQSAAEL 745 (872)
Q Consensus 704 ~~~~~v~~~~~~~l~~i~~~~~~~-~~~~l~~il~~l~~~l~~ 745 (872)
.+.-++++..+..-+.-.+.. +..|...+...+...+.+
T Consensus 712 ---te~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~d 751 (978)
T KOG1993|consen 712 ---TENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDD 751 (978)
T ss_pred ---hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 233355666555544433433 335666666666665543
No 82
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.65 E-value=4.4e-07 Score=88.46 Aligned_cols=192 Identities=17% Similarity=0.267 Sum_probs=132.0
Q ss_pred hccccchhhHHHHHHHHHHHHh-----hhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHH
Q 002876 618 AIRSATAHEEAMLAIGALAYAT-----GQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGI 692 (872)
Q Consensus 618 ~~~~~~~~~~a~~~l~~l~~~~-----~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i 692 (872)
.+.+|..|.+++.-+..++... .+.+.+.+..+++.+...+.+.. ..+...|+.+++.++..++..+.||++.+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 5568889999999999998776 23444555566677777776443 37888999999999999999999999999
Q ss_pred HHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHH-HHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHH
Q 002876 693 MTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYA-MPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAF 771 (872)
Q Consensus 693 ~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~i-l~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 771 (872)
++.|+..+.+. ...++..+..++..|+...+ +.+.+ .+.+....+++ ...+|..+++.+
T Consensus 96 l~~Ll~~~~~~--~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~K-------------n~~vR~~~~~~l 155 (228)
T PF12348_consen 96 LPPLLKKLGDS--KKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSK-------------NPQVREECAEWL 155 (228)
T ss_dssp HHHHHHGGG-----HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S--------------HHHHHHHHHHH
T ss_pred HHHHHHHHccc--cHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCC-------------CHHHHHHHHHHH
Confidence 99999999988 66788999999999988665 22344 55555556554 357899999999
Q ss_pred HHHhhcccCCCccccccc--chHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccc
Q 002876 772 SGIFQGFKGSPKTQLLMP--YAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLI 834 (872)
Q Consensus 772 ~~l~~~~~~~~~~~~~~~--~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~ 834 (872)
..++...... ...+.. .++.+.+.+...+.| .+.+||..|-.++..+...+|+.....+
T Consensus 156 ~~~l~~~~~~--~~~l~~~~~~~~l~~~l~~~l~D--~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 156 AIILEKWGSD--SSVLQKSAFLKQLVKALVKLLSD--ADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp HHHHTT-------GGG--HHHHHHHHHHHHHHHTS--S-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred HHHHHHccch--HhhhcccchHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 9988875511 122332 357899999999996 6999999999999999999986655443
No 83
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.9e-06 Score=81.28 Aligned_cols=342 Identities=13% Similarity=0.142 Sum_probs=192.3
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhccc
Q 002876 105 AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMN 184 (872)
Q Consensus 105 ~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~ 184 (872)
+-.....++.+++.+.....- ..-.+-...++-.+++.++.+..++-..++.+.-......+ -..+..+=+.+.+.+.
T Consensus 60 nlnlqrsaalafAeitek~vr-~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~l-iv~l~Gl~~Li~qmmt 137 (550)
T KOG4224|consen 60 NLNLQRSAALAFAEITEKGVR-RVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGL-IVSLLGLDLLILQMMT 137 (550)
T ss_pred ccccchHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceE-EEeccChHHHHHHhcC
Confidence 344555667777777655432 23345666677778888888877777777766554422211 1223333345555554
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhH-HHHHH
Q 002876 185 ASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI-QDIFN 263 (872)
Q Consensus 185 ~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~-~~l~~ 263 (872)
+..++|..+.+|+.++..+.. ......+..-+..+..+.+..+..++..+...|..+...+... ...+ ..-++
T Consensus 138 ---d~vevqcnaVgCitnLaT~d~--nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnR-r~LV~aG~lp 211 (550)
T KOG4224|consen 138 ---DGVEVQCNAVGCITNLATFDS--NKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENR-RVLVHAGGLP 211 (550)
T ss_pred ---CCcEEEeeehhhhhhhhcccc--chhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhh-hhhhccCCch
Confidence 456889999999999876421 1111111223444555667788888888999888876644321 1111 13356
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccc
Q 002876 264 ITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAW 343 (872)
Q Consensus 264 ~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~ 343 (872)
++.+.+...+.+++..+...++.++-... ..+...+.-|.++|.+++.|
T Consensus 212 vLVsll~s~d~dvqyycttaisnIaVd~~-----------------~Rk~Laqaep~lv~~Lv~Lm-------------- 260 (550)
T KOG4224|consen 212 VLVSLLKSGDLDVQYYCTTAISNIAVDRR-----------------ARKILAQAEPKLVPALVDLM-------------- 260 (550)
T ss_pred hhhhhhccCChhHHHHHHHHhhhhhhhHH-----------------HHHHHHhcccchHHHHHHHH--------------
Confidence 66677778888888888877777664221 11233344445555555544
Q ss_pred hHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCC
Q 002876 344 NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDP 422 (872)
Q Consensus 344 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~ 422 (872)
.+++.+++--|-.+++.++... +...+.+ ..-+|.+...+ +++
T Consensus 261 ---------------------------------d~~s~kvkcqA~lALrnlasdt--~Yq~eiv~ag~lP~lv~Ll-qs~ 304 (550)
T KOG4224|consen 261 ---------------------------------DDGSDKVKCQAGLALRNLASDT--EYQREIVEAGSLPLLVELL-QSP 304 (550)
T ss_pred ---------------------------------hCCChHHHHHHHHHHhhhcccc--hhhhHHHhcCCchHHHHHH-hCc
Confidence 2333333333334444444322 1111111 33467788888 888
Q ss_pred cHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhcc--CChhHHHHHHHHHHHHHHhcccCCCCCCCCch
Q 002876 423 NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK--DVPNVAEKACGALYFLAQGFEDAISPSSPLTP 500 (872)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~ 500 (872)
....-.+...|+.+++.+-..+. +....-|+.+++ ..|. |+.+++.+|...|.++....+. ....
T Consensus 305 ~~plilasVaCIrnisihplNe~---lI~dagfl~pLV----rlL~~~dnEeiqchAvstLrnLAasse~------n~~~ 371 (550)
T KOG4224|consen 305 MGPLILASVACIRNISIHPLNEV---LIADAGFLRPLV----RLLRAGDNEEIQCHAVSTLRNLAASSEH------NVSV 371 (550)
T ss_pred chhHHHHHHHHHhhcccccCccc---ceecccchhHHH----HHHhcCCchhhhhhHHHHHHHHhhhhhh------hhHH
Confidence 77777777788877777533221 223333444444 4443 6788999999999999764321 1111
Q ss_pred hH-HHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHc
Q 002876 501 FF-QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRC 537 (872)
Q Consensus 501 ~l-~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~ 537 (872)
.. ..-++.+...+.+.. ..++...-.|+..+.-.
T Consensus 372 i~esgAi~kl~eL~lD~p---vsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 372 IRESGAIPKLIELLLDGP---VSVQSEISACIAQLALN 406 (550)
T ss_pred HhhcCchHHHHHHHhcCC---hhHHHHHHHHHHHHHhc
Confidence 11 123455555555542 45666666666666544
No 84
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.61 E-value=2e-07 Score=74.13 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=79.6
Q ss_pred hhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHH
Q 002876 382 RQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIIS 461 (872)
Q Consensus 382 ~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~ 461 (872)
+.|.+++.++++++.+.. +...++++.+++.++.++ .|++++||+.|+.++.++++...++ .-.++..+++
T Consensus 1 n~R~ggli~Laa~ai~l~-~~~~~~l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~-------~l~~f~~IF~ 71 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALG-KDISKYLDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGE-------ILPYFNEIFD 71 (97)
T ss_pred CchhHHHHHHHHHHHHch-HhHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 368999999999998885 668999999999999999 9999999999999999999987532 2458899999
Q ss_pred HHHHhccC-ChhHHHHHHHHHHHHH
Q 002876 462 VLLQSMKD-VPNVAEKACGALYFLA 485 (872)
Q Consensus 462 ~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
.+.+.+.| ++.||..|. .|.++.
T Consensus 72 ~L~kl~~D~d~~Vr~~a~-~Ld~ll 95 (97)
T PF12755_consen 72 ALCKLSADPDENVRSAAE-LLDRLL 95 (97)
T ss_pred HHHHHHcCCchhHHHHHH-HHHHHh
Confidence 99999998 688887764 555543
No 85
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=0.0002 Score=74.81 Aligned_cols=300 Identities=16% Similarity=0.192 Sum_probs=176.7
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 002876 217 RDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILE 296 (872)
Q Consensus 217 ~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~ 296 (872)
+....+.+..+..+.++.+|..|++.|..+-+.+ ..-..++......+.|.+++||..|++++..++...+.-.
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~- 269 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL- 269 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc-
Confidence 3456666777888899999999999998876621 1113456677788899999999999987666654321000
Q ss_pred hcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhh
Q 002876 297 EYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENI 376 (872)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~ 376 (872)
..++ --.......+.-++..+. +..|.+|..|+++|+.+.+...+- +.+.+.+.+
T Consensus 270 ----e~e~--------~e~kl~D~aF~~vC~~v~---------D~sl~VRV~AaK~lG~~~~vSee~----i~QTLdKKl 324 (823)
T KOG2259|consen 270 ----ERES--------EEEKLKDAAFSSVCRAVR---------DRSLSVRVEAAKALGEFEQVSEEI----IQQTLDKKL 324 (823)
T ss_pred ----cchh--------hhhhhHHHHHHHHHHHHh---------cCceeeeehHHHHhchHHHhHHHH----HHHHHHHHH
Confidence 0000 001122223333444443 345899999999998776543221 122222222
Q ss_pred cC--cchhhhH---HHHHHHHHhhCCC--C----CCcch----HHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 002876 377 TK--QEWRQRE---AATYAFGSILEGP--S----PEKLV----PLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (872)
Q Consensus 377 ~~--~~~~~r~---aal~~l~~l~~~~--~----~~~~~----~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (872)
-+ ..|+... ..++.=|....+- + .+... ..+ ......++.++ .|+-..||.+|...++.++..
T Consensus 325 ms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGl-EDEf~EVR~AAV~Sl~~La~s 403 (823)
T KOG2259|consen 325 MSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGL-EDEFYEVRRAAVASLCSLATS 403 (823)
T ss_pred hhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeec-hHHHHHHHHHHHHHHHHHHcC
Confidence 22 1122211 1121112111110 0 00000 011 22345678889 999999999999999999885
Q ss_pred ccCCCCCCcccCccchHHHHHHHHHhccCC-hhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCch
Q 002876 441 LHGSTLETPIINQGNCQQIISVLLQSMKDV-PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAG 519 (872)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~ 519 (872)
.| .+....+..|+..++|+ ..||..|..+|..+..... .- ...++.++..+.+.
T Consensus 404 sP-----------~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-------i~----eeql~~il~~L~D~--- 458 (823)
T KOG2259|consen 404 SP-----------GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-------IR----EEQLRQILESLEDR--- 458 (823)
T ss_pred CC-----------CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-------ec----HHHHHHHHHHHHhc---
Confidence 43 45668899999999985 7899999999999987631 12 24455556666554
Q ss_pred hhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002876 520 ESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQK 591 (872)
Q Consensus 520 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 591 (872)
++++|. ++..+.....-.....+...+..++..+... +.|++. +..|+..+.++
T Consensus 459 s~dvRe----~l~elL~~~~~~d~~~i~m~v~~lL~~L~ky-------PqDrd~-------i~~cm~~iGqn 512 (823)
T KOG2259|consen 459 SVDVRE----ALRELLKNARVSDLECIDMCVAHLLKNLGKY-------PQDRDE-------ILRCMGRIGQN 512 (823)
T ss_pred CHHHHH----HHHHHHHhcCCCcHHHHHHHHHHHHHHhhhC-------CCCcHH-------HHHHHHHHhcc
Confidence 466774 3444555555445555666667777666554 344442 45566666544
No 86
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.00024 Score=76.19 Aligned_cols=441 Identities=14% Similarity=0.104 Sum_probs=248.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--ChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ--NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~--~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
++..+-..+.+.-+..|+.|.+..-..-.- +....+....... ...|.+.+.+.=..+.|+...
T Consensus 14 ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~--~T~dlelKKlvyLYl~nYa~~------------ 79 (734)
T KOG1061|consen 14 EIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCM--QTRDLELKKLVYLYLMNYAKG------------ 79 (734)
T ss_pred hchHHHHHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhc--ccCCchHHHHHHHHHHHhhcc------------
Confidence 344455555555556777776666433222 1222222222222 244688888887778776642
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002876 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (872)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~ 161 (872)
| ++......+.+++-..++++.+|..|.+..+.+-. + ..|.-++..+..++++.++.+|..+..+...+...
T Consensus 80 ~----P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~-~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~ 151 (734)
T KOG1061|consen 80 K----PDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRV---D-KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI 151 (734)
T ss_pred C----chHHHhhhhhhhccCCCCCHHHHHHHhhceeeEee---h-HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC
Confidence 2 22233345567778889999999888877655432 2 46777888999999999999999999998877654
Q ss_pred ccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 002876 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (872)
Q Consensus 162 ~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~ 241 (872)
- ++. .+-..+++.+...+. |.++.|-..|+.++..+.+.-++...... ...+...+...++.-+..-+...++
T Consensus 152 ~-~~~---~~~~gl~~~L~~ll~--D~~p~VVAnAlaaL~eI~e~~~~~~~~~l-~~~~~~~lL~al~ec~EW~qi~IL~ 224 (734)
T KOG1061|consen 152 D-PDL---VEDSGLVDALKDLLS--DSNPMVVANALAALSEIHESHPSVNLLEL-NPQLINKLLEALNECTEWGQIFILD 224 (734)
T ss_pred C-hhh---ccccchhHHHHHHhc--CCCchHHHHHHHHHHHHHHhCCCCCcccc-cHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3 332 344556666766666 88999999999999997764432111000 1233344444333323333444444
Q ss_pred HHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhH
Q 002876 242 CLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVL 321 (872)
Q Consensus 242 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 321 (872)
++.. ..|+.- .-...+++.+...+++.+..+...+..++......... +....+..+
T Consensus 225 ~l~~---y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-------------------~~~~~~~K~ 281 (734)
T KOG1061|consen 225 CLAE---YVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-------------------VNELLFKKV 281 (734)
T ss_pred HHHh---cCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-------------------HHHHHHHHh
Confidence 4443 222211 12346777777777777777777777776666543321 112222223
Q ss_pred HHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCC
Q 002876 322 VPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE 401 (872)
Q Consensus 322 ~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~ 401 (872)
-+-+...+.... .....+..-+..+....++-.-..+.-|..+ .+++ -.++..-+.++..++...
T Consensus 282 ~~pl~tlls~~~----------e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~k-ynDP-iYvK~eKleil~~la~~~--- 346 (734)
T KOG1061|consen 282 APPLVTLLSSES----------EIQYVALRNINLILQKRPEILKVEIKVFFCK-YNDP-IYVKLEKLEILIELANDA--- 346 (734)
T ss_pred cccceeeecccc----------hhhHHHHhhHHHHHHhChHHHHhHhHeeeee-cCCc-hhhHHHHHHHHHHHhhHh---
Confidence 333333222111 1111222222222222222111111111111 1233 245555565665555432
Q ss_pred cchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHH
Q 002876 402 KLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGA 480 (872)
Q Consensus 402 ~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~a 480 (872)
.+.++++-+...- .+-+......+.+++|+++..... . ..++..++..+.- ...|...++..
T Consensus 347 ----nl~qvl~El~eYa-tevD~~fvrkaIraig~~aik~e~----------~--~~cv~~lLell~~~~~yvvqE~~vv 409 (734)
T KOG1061|consen 347 ----NLAQVLAELKEYA-TEVDVDFVRKAVRAIGRLAIKAEQ----------S--NDCVSILLELLETKVDYVVQEAIVV 409 (734)
T ss_pred ----HHHHHHHHHHHhh-hhhCHHHHHHHHHHhhhhhhhhhh----------h--hhhHHHHHHHHhhcccceeeehhHH
Confidence 2455777777777 778888888899999999886531 1 5677778877763 23344445556
Q ss_pred HHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHcccc
Q 002876 481 LYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (872)
Q Consensus 481 l~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~ 540 (872)
+..+.+.++. ....+++.+...+..-+ +|..|....|.++.-+...++
T Consensus 410 i~dilRkyP~----------~~~~vv~~l~~~~~sl~--epeak~amiWilg~y~~~i~~ 457 (734)
T KOG1061|consen 410 IRDILRKYPN----------KYESVVAILCENLDSLQ--EPEAKAALIWILGEYAERIEN 457 (734)
T ss_pred HHhhhhcCCC----------chhhhhhhhcccccccC--ChHHHHHHHHHHhhhhhccCc
Confidence 6666655432 23556666666665555 677887777777777766654
No 87
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00033 Score=74.31 Aligned_cols=418 Identities=12% Similarity=0.146 Sum_probs=230.9
Q ss_pred HHHHHHHH-HcCCcchhchHHHHH-hhhcCcchhhhHHHHHHHHHhhCCCCC-CcchHHHHHHHHHHHHHhccCCcHHHH
Q 002876 351 TCLGLVAR-TVGDDIVPLVMPFVE-ENITKQEWRQREAATYAFGSILEGPSP-EKLVPLVNIALNFMLTALMQDPNNHVK 427 (872)
Q Consensus 351 ~~l~~l~~-~~~~~~~~~l~~~l~-~~~~~~~~~~r~aal~~l~~l~~~~~~-~~~~~~~~~i~~~l~~~l~~d~~~~vr 427 (872)
++++.+.. ...++-+|.++..+. -.+.+.+-..+.- ++.+..++..... ..+-..+--+...+-+-| ++||..+|
T Consensus 39 eamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKL-ly~ywE~vPKt~~dgkl~~EMILvcna~RkDL-QHPNEyiR 116 (948)
T KOG1058|consen 39 EAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKL-LYYYWELVPKTDSDGKLLHEMILVCNAYRKDL-QHPNEYIR 116 (948)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHH-HHHHHHHccccCCCcccHHHHHHHHHHHhhhc-cCchHhhc
Confidence 55555444 344445565555544 3445555555554 3444455544322 223333344556777888 99999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHH
Q 002876 428 DTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-DVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIV 506 (872)
Q Consensus 428 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~ 506 (872)
-..++.+.++-+ ++.+++++|.+..++. .++-||.+|..|+..+-..+ ..+.|-.+.++
T Consensus 117 G~TLRFLckLkE-------------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-------~~L~pDapeLi 176 (948)
T KOG1058|consen 117 GSTLRFLCKLKE-------------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-------EHLIPDAPELI 176 (948)
T ss_pred chhhhhhhhcCc-------------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-------hhhcCChHHHH
Confidence 999888776544 4567799999999997 47999999999999998763 56778888888
Q ss_pred HHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHH
Q 002876 507 QALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQ 586 (872)
Q Consensus 507 ~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 586 (872)
...+..=++ +.-+..|+-. +....++....|+...+..+- +-.+ .++..+.+.|.
T Consensus 177 ~~fL~~e~D-----psCkRNAFi~---L~~~D~ErAl~Yl~~~idqi~--------------~~~~---~LqlViVE~Ir 231 (948)
T KOG1058|consen 177 ESFLLTEQD-----PSCKRNAFLM---LFTTDPERALNYLLSNIDQIP--------------SFND---SLQLVIVELIR 231 (948)
T ss_pred HHHHHhccC-----chhHHHHHHH---HHhcCHHHHHHHHHhhHhhcc--------------CccH---HHHHHHHHHHH
Confidence 877665444 3334444433 333333333333332222211 0000 12223334443
Q ss_pred HHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhH
Q 002876 587 VIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQV 666 (872)
Q Consensus 587 ~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v 666 (872)
..+.+-+ ..-...+..++.+|++.++.++=++...+..+.. -+..+.+-...++..+.+ ..+-++
T Consensus 232 kv~~~~p----------~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~Aa~~~i~l~~k----esdnnv 296 (948)
T KOG1058|consen 232 KVCLANP----------AEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKAAASTYIDLLVK----ESDNNV 296 (948)
T ss_pred HHHhcCH----------HHhhHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHHHHHHHHHHHHh----ccCcch
Confidence 3332111 1122344555666666665554333322222210 011222223334444433 222245
Q ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhc
Q 002876 667 CAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 667 ~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~ 746 (872)
+-..+.-+..+...- ...+.+++-.++..++.+ +-++|.-++...-.++.+. -++++...|.+-+...
T Consensus 297 klIvldrl~~l~~~~----~~il~~l~mDvLrvLss~--dldvr~Ktldi~ldLvssr------Nvediv~~Lkke~~kT 364 (948)
T KOG1058|consen 297 KLIVLDRLSELKALH----EKILQGLIMDVLRVLSSP--DLDVRSKTLDIALDLVSSR------NVEDIVQFLKKEVMKT 364 (948)
T ss_pred hhhhHHHHHHHhhhh----HHHHHHHHHHHHHHcCcc--cccHHHHHHHHHHhhhhhc------cHHHHHHHHHHHHHhc
Confidence 545555555544211 122345555666778888 6788888887666665433 3556666666666555
Q ss_pred cCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 002876 747 VHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTL 826 (872)
Q Consensus 747 ~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~ 826 (872)
.+.+ .++... .|.-.++++-.... .|..+-..+++.+...+.| .+.......+.++.++.+.+
T Consensus 365 ~~~e--~d~~~~----yRqlLiktih~cav---------~Fp~~aatvV~~ll~fisD--~N~~aas~vl~FvrE~iek~ 427 (948)
T KOG1058|consen 365 HNEE--SDDNGK----YRQLLIKTIHACAV---------KFPEVAATVVSLLLDFISD--SNEAAASDVLMFVREAIEKF 427 (948)
T ss_pred cccc--cccchH----HHHHHHHHHHHHhh---------cChHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhC
Confidence 4321 111123 34445555444432 2556778899999999986 67888888899999999988
Q ss_pred cCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 002876 827 GSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLA 865 (872)
Q Consensus 827 g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~ 865 (872)
+ .+-.+ ++..++...-+-...++-..|.|+.++
T Consensus 428 p-----~Lr~~-ii~~l~~~~~~irS~ki~rgalwi~Ge 460 (948)
T KOG1058|consen 428 P-----NLRAS-IIEKLLETFPQIRSSKICRGALWILGE 460 (948)
T ss_pred c-----hHHHH-HHHHHHHhhhhhcccccchhHHHHHHH
Confidence 4 22222 455565555444445555566666554
No 88
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.0012 Score=70.13 Aligned_cols=359 Identities=12% Similarity=0.131 Sum_probs=197.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhh
Q 002876 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH 171 (872)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~ 171 (872)
.+.+.+.+-|++||+.+|-..-. -+++-.-| +-...++|.+.+++.+....+|+.|..++..|++.. .+ + -+.
T Consensus 99 Lvcna~RkDLQHPNEyiRG~TLR---FLckLkE~-ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~~-L-~pD 171 (948)
T KOG1058|consen 99 LVCNAYRKDLQHPNEYIRGSTLR---FLCKLKEP-ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-EH-L-IPD 171 (948)
T ss_pred HHHHHHhhhccCchHhhcchhhh---hhhhcCcH-HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-hh-h-cCC
Confidence 45566777799999999965444 34433323 345678899999999999999999999999998874 23 3 355
Q ss_pred HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhH
Q 002876 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (872)
Q Consensus 172 ~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 251 (872)
.+.++..++. . +.++..+..|+-.|...= .+...+++.. .+..+.+-++.+.....+.+...+...|
T Consensus 172 apeLi~~fL~--~--e~DpsCkRNAFi~L~~~D--------~ErAl~Yl~~-~idqi~~~~~~LqlViVE~Irkv~~~~p 238 (948)
T KOG1058|consen 172 APELIESFLL--T--EQDPSCKRNAFLMLFTTD--------PERALNYLLS-NIDQIPSFNDSLQLVIVELIRKVCLANP 238 (948)
T ss_pred hHHHHHHHHH--h--ccCchhHHHHHHHHHhcC--------HHHHHHHHHh-hHhhccCccHHHHHHHHHHHHHHHhcCH
Confidence 6666555442 2 667777777665554311 0000111111 1222222344555555555555555444
Q ss_pred HhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhc
Q 002876 252 EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLK 331 (872)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~ 331 (872)
..-.. .+..+...+++.++.++..|...+..+.... ..++.....++..+.+
T Consensus 239 ~~~~~----~i~~i~~lL~stssaV~fEaa~tlv~lS~~p--------------------~alk~Aa~~~i~l~~k---- 290 (948)
T KOG1058|consen 239 AEKAR----YIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP--------------------TALKAAASTYIDLLVK---- 290 (948)
T ss_pred HHhhH----HHHHHHHHHhcCCchhhhhhcceEEEccCCH--------------------HHHHHHHHHHHHHHHh----
Confidence 43223 3444445555556666665554444443211 2233333333333222
Q ss_pred ccCCcccCCccchHhHHHHHHHHHHHHHc--CCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHH
Q 002876 332 QEEDQDQDEGAWNIAMAGGTCLGLVARTV--GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNI 409 (872)
Q Consensus 332 ~~~d~~~~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~ 409 (872)
..+ .+++. -.++++...- .+.++..+..-+...+++++..+|.-++...-.++..-. +.+
T Consensus 291 esd--------nnvkl---Ivldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN-------ved 352 (948)
T KOG1058|consen 291 ESD--------NNVKL---IVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN-------VED 352 (948)
T ss_pred ccC--------cchhh---hhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc-------HHH
Confidence 111 23432 3455555433 344555555555567788898888888755555554332 344
Q ss_pred HHHHHHHHh------ccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHH
Q 002876 410 ALNFMLTAL------MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALY 482 (872)
Q Consensus 410 i~~~l~~~l------~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~ 482 (872)
++.++...+ .+|.+...|..-..++...+..++ ++...+++.+++.+.| |+.........+.
T Consensus 353 iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp-----------~~aatvV~~ll~fisD~N~~aas~vl~Fvr 421 (948)
T KOG1058|consen 353 IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP-----------EVAATVVSLLLDFISDSNEAAASDVLMFVR 421 (948)
T ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh-----------HHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 444444444 134566778888888887777664 4667899999999987 5543322222233
Q ss_pred HHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccc
Q 002876 483 FLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST 539 (872)
Q Consensus 483 ~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~ 539 (872)
...+.+ + ..=..|+..++..+..-. ..++...++|.+|..+...+
T Consensus 422 E~iek~------p----~Lr~~ii~~l~~~~~~ir--S~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 422 EAIEKF------P----NLRASIIEKLLETFPQIR--SSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHhC------c----hHHHHHHHHHHHhhhhhc--ccccchhHHHHHHHHHhhhH
Confidence 333322 1 122345555555443322 23445567777766655443
No 89
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.0046 Score=65.50 Aligned_cols=431 Identities=13% Similarity=0.127 Sum_probs=220.5
Q ss_pred chhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccC
Q 002876 364 IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHG 443 (872)
Q Consensus 364 ~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
+...++.-+...+.+.+.....-|+.+++.+.+-- ....+-+++-..+.+ .+....||..++.|+=++.+..++
T Consensus 108 l~klvin~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~~~DI~KlLvS---~~~~~~vkqkaALclL~L~r~spD 181 (938)
T KOG1077|consen 108 LMKLVINSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAFADDIPKLLVS---GSSMDYVKQKAALCLLRLFRKSPD 181 (938)
T ss_pred HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHhhhhhHHHHhC---CcchHHHHHHHHHHHHHHHhcCcc
Confidence 33445555666677777666666676666665422 122222333333322 567788999999999999887652
Q ss_pred CCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCC-----
Q 002876 444 STLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED----- 517 (872)
Q Consensus 444 ~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~----- 517 (872)
......+.+.++. .|+| +-.|..++...+..++...+ +.....++.-+..+........
T Consensus 182 -----l~~~~~W~~riv~----LL~D~~~gv~ta~~sLi~~lvk~~p------~~yk~~~~~avs~L~riv~~~~t~~qd 246 (938)
T KOG1077|consen 182 -----LVNPGEWAQRIVH----LLDDQHMGVVTAATSLIEALVKKNP------ESYKTCLPLAVSRLSRIVVVVGTSLQD 246 (938)
T ss_pred -----ccChhhHHHHHHH----HhCccccceeeehHHHHHHHHHcCC------HHHhhhHHHHHHHHHHHHhhcccchhh
Confidence 1222355555544 4444 34555555555555544321 1122222222222222111000
Q ss_pred -----chhhhhHHHHHHHHHHHHHcccc-CcHH---HHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHH
Q 002876 518 -----AGESRLRTAAYETLNEVVRCSTD-ETAP---MVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVI 588 (872)
Q Consensus 518 -----~~~~~v~~~~~~~l~~l~~~~~~-~~~~---~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 588 (872)
...|.+...++..|..+ +. +-.+ -+.+++..++....++.. ......+. .--..++++|+-+
T Consensus 247 YTyy~vP~PWL~vKl~rlLq~~----p~~~D~~~r~~l~evl~~iLnk~~~~~~--~k~vq~~n---a~naVLFeaI~l~ 317 (938)
T KOG1077|consen 247 YTYYFVPAPWLQVKLLRLLQIY----PTPEDPSTRARLNEVLERILNKAQEPPK--SKKVQHSN---AKNAVLFEAISLA 317 (938)
T ss_pred ceeecCCChHHHHHHHHHHHhC----CCCCCchHHHHHHHHHHHHHhccccCcc--ccchHhhh---hHHHHHHHHHHHH
Confidence 00122332333322222 21 1111 111112222211111100 00000000 0112245555433
Q ss_pred HHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh--hhhHhhhHHHHHHHHhhhcCCChhhH
Q 002876 589 IQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG--QDFLKYMPEFYKYVEMGLQNFEDYQV 666 (872)
Q Consensus 589 ~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~v 666 (872)
. .+.++ .......++.+.+.+.+....+|--++..+..++.+-. +....+.+.++ ..|+...|..+
T Consensus 318 ~-h~D~e-------~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii----~sLkterDvSi 385 (938)
T KOG1077|consen 318 I-HLDSE-------PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTII----NSLKTERDVSI 385 (938)
T ss_pred H-HcCCc-------HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHH----HHhccccchHH
Confidence 3 33322 24556778888889998888888878888887776522 22334444444 44554567799
Q ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhc
Q 002876 667 CAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 667 ~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~ 746 (872)
|+.++.++-.++..-. +..|+..+++-+... +..+|+....-++-++..+..++.=|++.++..+.-+- +.
T Consensus 386 rrravDLLY~mcD~~N------ak~IV~elLqYL~tA--d~sireeivlKvAILaEKyAtDy~WyVdviLqLiriag-d~ 456 (938)
T KOG1077|consen 386 RRRAVDLLYAMCDVSN------AKQIVAELLQYLETA--DYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAG-DY 456 (938)
T ss_pred HHHHHHHHHHHhchhh------HHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc-cc
Confidence 9999999988876543 567888888888776 77899999999999999999999999998888776432 22
Q ss_pred cCC---------CCCCccHHHHH----------HHHHHHHHHHHHHHhhcccCCCccccccc--ch--HHHHHHHHHHhc
Q 002876 747 VHT---------SGVDDDMTEYT----------NSLRNGILEAFSGIFQGFKGSPKTQLLMP--YA--PHILQFLDSLYM 803 (872)
Q Consensus 747 ~~~---------~~~d~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~--~~i~~~l~~~l~ 803 (872)
.+. .-+.+|-..|. ....+.++++-+.+++.++.. +.. -. ...+..+.+-+.
T Consensus 457 vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~L-----Ia~~prss~~~qFsllh~K~~ 531 (938)
T KOG1077|consen 457 VSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNL-----IADDPRSSPAVQFSLLHEKLH 531 (938)
T ss_pred ccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhh-----hcCCCCCChHHHHHHHHHHhc
Confidence 110 00112212221 122344455544455443321 111 11 234444544443
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHH
Q 002876 804 EKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESA 859 (872)
Q Consensus 804 ~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~ 859 (872)
..+...|...+.++-.++..+ |-+.. -|..+++.-.+.-|.++.+-|
T Consensus 532 --~~s~~tr~lLLtTyiKl~nl~-----PEi~~--~v~~vFq~~~n~~D~ElQqRa 578 (938)
T KOG1077|consen 532 --LCSPVTRALLLTTYIKLINLF-----PEIKS--NVQKVFQLYSNLIDVELQQRA 578 (938)
T ss_pred --cCChhHHHHHHHHHHHHHhhC-----hhhhH--HHHHHHHhhcccCCHHHHHHH
Confidence 245566777677776666665 22222 266666655545555555443
No 90
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=0.0011 Score=71.56 Aligned_cols=388 Identities=14% Similarity=0.140 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHhccCC-cHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC--ChhHHHHHHHHHHH
Q 002876 407 VNIALNFMLTALMQDP-NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYF 483 (872)
Q Consensus 407 ~~~i~~~l~~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~ 483 (872)
+..++|.++..+ +++ ++.+...||+++..+++.+|... ....-...+|.++..|.. --.|.+.+..+|..
T Consensus 209 v~slvp~Lv~LL-~~E~n~DIMl~AcRaltyl~evlP~S~------a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~ 281 (1051)
T KOG0168|consen 209 VKSLVPVLVALL-SHEHNFDIMLLACRALTYLCEVLPRSS------AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEK 281 (1051)
T ss_pred HHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHhhccchh------heeecccchHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 477889999999 665 78999999999999999987421 111222467777776663 46788888999988
Q ss_pred HHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhh
Q 002876 484 LAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEA 563 (872)
Q Consensus 484 l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 563 (872)
+.+.-+ +..+..- -+..++..+.-. .-.++..|+.....+++....+-..++.+.+|.+...+..
T Consensus 282 iSR~H~-----~AiL~AG---~l~a~LsylDFF---Si~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~---- 346 (1051)
T KOG0168|consen 282 ISRRHP-----KAILQAG---ALSAVLSYLDFF---SIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSY---- 346 (1051)
T ss_pred HHhhcc-----HHHHhcc---cHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhh----
Confidence 876532 2222211 112222222211 2345667777778888888777677788888888877754
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhH-HHHHHHHHHHHhccccch----hhHHHHHHHHHHHH
Q 002876 564 QKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYA-DQMMGLFLRVFAIRSATA----HEEAMLAIGALAYA 638 (872)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~----~~~a~~~l~~l~~~ 638 (872)
.|+ ......+-|+..++..+.... +.+.+.+ ..++..+.+++.-....+ ....+..+..++..
T Consensus 347 -----~D~----k~ies~~ic~~ri~d~f~h~~---~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~ 414 (1051)
T KOG0168|consen 347 -----QDK----KPIESVCICLTRIADGFQHGP---DKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG 414 (1051)
T ss_pred -----ccc----hhHHHHHHHHHHHHHhcccCh---HHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC
Confidence 222 233457778888887776541 1233332 456777777776654333 33444455555544
Q ss_pred hhhhhHhhhH-HHHHHHHhhhcCCCh-------------hhHHHHHHHHHHHHHHHHhcc--------------------
Q 002876 639 TGQDFLKYMP-EFYKYVEMGLQNFED-------------YQVCAITVGVVGDLCRALEDK-------------------- 684 (872)
Q Consensus 639 ~~~~~~~~~~-~i~~~l~~~l~~~~~-------------~~v~~~a~~~l~~l~~~~~~~-------------------- 684 (872)
+.-.+...+. .|-..+...+..... +.-......++..+.-..+.+
T Consensus 415 ~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~ 494 (1051)
T KOG0168|consen 415 SPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADEL 494 (1051)
T ss_pred ChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccc
Confidence 4444444333 244444444432110 111111112222222111111
Q ss_pred ----------ccccHHHHHHHHHHHccCCC-CCCCCchhHH--HHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCC
Q 002876 685 ----------ILPYCDGIMTQLLKDLSSNQ-LHRSVKPPIF--SCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSG 751 (872)
Q Consensus 685 ----------~~~~~~~i~~~l~~~l~~~~-~~~~v~~~~~--~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~ 751 (872)
+.+| .++...++.-++.+. ..+.+ +.-+ .+=..+...-++.+..|...++|.|.+..+...+
T Consensus 495 ~~~~~d~~~s~~~~-~~~~~ri~~q~~~~~~t~~~~-~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~--- 569 (1051)
T KOG0168|consen 495 LWQWRDDRGSWHTY-TNIDSRIIEQINEDTGTSRKQ-QDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSAN--- 569 (1051)
T ss_pred cccCcccccccccc-chhhhhhhhhhccCcccchhh-hhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCC---
Confidence 0001 011111111111110 00000 0000 0111111112345778999999999999988742
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchH--HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 002876 752 VDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAP--HILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSN 829 (872)
Q Consensus 752 ~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~ 829 (872)
..||..++.++..++... ..+.+...+. .+-..+..++.. .+..+.--|+...--|.+.+++-
T Consensus 570 ---------~~VR~kcL~Ailrlvy~s----~seli~slLk~~~vSS~lAG~lss--kD~~vlVgALQvAEiLmeKlpd~ 634 (1051)
T KOG0168|consen 570 ---------PDVRYKCLSAILRLVYFS----NSELIGSLLKNTNVSSHLAGMLSS--KDLTVLVGALQVAEILMEKLPDT 634 (1051)
T ss_pred ---------chhhHHHHHHHHHHHhhC----CHHHHHHHHhcchHHHHHHhhhhc--CCCeeEeehHHHHHHHHHHhHHH
Confidence 357778888877776542 2233333322 133344555553 46677888899999999999999
Q ss_pred ccccccCchHHHHHHHHHhc
Q 002876 830 AGPLIQQSVSSKDFLNECLS 849 (872)
Q Consensus 830 ~~~~~~~~~~v~~~l~~~~~ 849 (872)
|.++|-... |...++.+..
T Consensus 635 F~~~F~REG-V~~~v~~L~~ 653 (1051)
T KOG0168|consen 635 FSPSFRREG-VFHAVKQLSV 653 (1051)
T ss_pred hhhhHhhhh-HHHHHHHHhc
Confidence 999888775 7777777665
No 91
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.36 E-value=0.0082 Score=65.89 Aligned_cols=156 Identities=12% Similarity=0.139 Sum_probs=129.2
Q ss_pred HhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhh-hhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHh
Q 002876 604 QYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQ-DFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALE 682 (872)
Q Consensus 604 ~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 682 (872)
.++.+++|.+.+.+.......+...+.+|+.+..+.+. ...|.++.++|.|++++.- .+..+|..++.++..+....+
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~-~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSM-PDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCC-CccchhhhHhhhhhHHHHhcc
Confidence 46678888888888877778899999999999998885 5679999999999999984 467899999999999998888
Q ss_pred ccccccHHHHHHHHHHHccCCCCC-CCCchhHHHHHHHHHHHhc-cchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHH
Q 002876 683 DKILPYCDGIMTQLLKDLSSNQLH-RSVKPPIFSCFGDIALAIG-ENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYT 760 (872)
Q Consensus 683 ~~~~~~~~~i~~~l~~~l~~~~~~-~~v~~~~~~~l~~i~~~~~-~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~ 760 (872)
.-...|+..+++.++.+=.+++.+ ..+|..+++|++.+....+ ....+|-+.++..|.+.+.++ -
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-------------K 1008 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-------------K 1008 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-------------H
Confidence 888889999999999876555321 5689999999999999665 457799999999999988554 3
Q ss_pred HHHHHHHHHHHHH
Q 002876 761 NSLRNGILEAFSG 773 (872)
Q Consensus 761 ~~~~~~~~~~~~~ 773 (872)
.-+|+.+..+-..
T Consensus 1009 RlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 1009 RLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHHHhhh
Confidence 5788888777443
No 92
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.34 E-value=2.5e-06 Score=67.90 Aligned_cols=87 Identities=22% Similarity=0.335 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCC
Q 002876 624 AHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSN 703 (872)
Q Consensus 624 ~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 703 (872)
.|..++.+|+.++.+++....+|++.++|.++..+.+. ++.||..|++++..+++..+..+.+|.+++.+.|.+.+.++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36788999999999999999999999999999999865 66999999999999999999999999999999999999998
Q ss_pred CCCCCCchhH
Q 002876 704 QLHRSVKPPI 713 (872)
Q Consensus 704 ~~~~~v~~~~ 713 (872)
+.+||..+
T Consensus 81 --d~~Vr~~a 88 (97)
T PF12755_consen 81 --DENVRSAA 88 (97)
T ss_pred --chhHHHHH
Confidence 67776654
No 93
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.33 E-value=0.00026 Score=74.43 Aligned_cols=236 Identities=11% Similarity=0.135 Sum_probs=165.5
Q ss_pred CCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHH
Q 002876 494 PSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREK 573 (872)
Q Consensus 494 ~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 573 (872)
++..+.|+.+.++..|...+..... .--+..++|+..++...++...|+...+++.+...+..... +++++.
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s---~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~k----NPsnP~- 87 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGS---AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSK----NPSNPR- 87 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-S---TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHT----S---HH-
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCC---ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh----CCCCcc-
Confidence 3667889999999999999976432 11236789999999999999999999999999988877653 244443
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh-hhhHhhhHHHHH
Q 002876 574 QNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG-QDFLKYMPEFYK 652 (872)
Q Consensus 574 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~i~~ 652 (872)
.-..++++++.+++..... ..+.+..+.+.+++.+..+|+..-.+.-..++..++.+..... ..+.+.+..++|
T Consensus 88 ---FnHylFEsi~~lir~~~~~--~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~ 162 (435)
T PF03378_consen 88 ---FNHYLFESIGALIRFVCEA--DPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFP 162 (435)
T ss_dssp ---HHHHHHHHHHHHHHHS-GG--GHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHH
T ss_pred ---hhhhHHHHHHHHHHhccCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 3345788999888876543 1233557788899999999998877888899999999998877 566677788888
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhcc-chH
Q 002876 653 YVEMGLQNFEDYQVCAITVGVVGDLCRALEDKIL--PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE-NFE 729 (872)
Q Consensus 653 ~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~-~~~ 729 (872)
.++.-.-......+ -....++..++++.+..+. .++..++..+-+++.+... -..++..+..|...++. .+.
T Consensus 163 ~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~----D~~gF~LL~~iv~~~p~~~l~ 237 (435)
T PF03378_consen 163 PLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN----DHYGFDLLESIVENLPPEALE 237 (435)
T ss_dssp HHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC----HHHHHHHHHHHHHHS-HHHHG
T ss_pred HHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc----chHHHHHHHHHHHHCCHHHHH
Confidence 87753221111122 3455688888888776664 5777888888778876631 25688999999999876 478
Q ss_pred HhHHHHHHHHHHHHhhcc
Q 002876 730 KYLMYAMPMLQSAAELSV 747 (872)
Q Consensus 730 ~~l~~il~~l~~~l~~~~ 747 (872)
+|++.++..++..++...
T Consensus 238 ~yl~~I~~lll~RLq~sk 255 (435)
T PF03378_consen 238 PYLKQIFTLLLTRLQSSK 255 (435)
T ss_dssp GGHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhCC
Confidence 999999999999998763
No 94
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=0.01 Score=63.61 Aligned_cols=509 Identities=14% Similarity=0.148 Sum_probs=252.5
Q ss_pred HHHhcChhHHHHHHHHHhhc--CCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCCh
Q 002876 29 QYQEQNLPGFLLSLAGELVN--DEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAH 106 (872)
Q Consensus 29 ~~~~~~~~~~~~~L~~~l~~--~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~ 106 (872)
-+.+++.|.....-.+++.. ...++.+--.+.-..++++. |-.++--.-+...+.|...+. -.
T Consensus 181 aMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVS-------------WIdInLIaNd~f~nLLy~fl~--ie 245 (980)
T KOG2021|consen 181 AMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVS-------------WIDINLIANDYFLNLLYKFLN--IE 245 (980)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhh-------------hhhhhhhhchhHHHHHHHHHh--HH
Confidence 45555666655555555542 13367766667777776664 655555455566677777776 45
Q ss_pred HHHHHHHHHHHHHHHhh-cCCCCchhHHHHHHHhhc-----CC----ChhHHHHHHHHHH-----------Hhhhhcccc
Q 002876 107 DARSTASQVVAKVAGIE-LPHKQWPELIGALLSNIH-----QL----PPHTKQATLETLG-----------YICEEVSSD 165 (872)
Q Consensus 107 ~vr~~~a~~l~~i~~~~-~~~~~~~~l~~~l~~~l~-----~~----~~~~r~~al~~l~-----------~i~~~~~~~ 165 (872)
.+|-.||.|+-.+...- -| ..--.+++.|.+.++ +. +.+.-......+. .+.++.++
T Consensus 246 elR~aac~cilaiVsKkMkP-~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~- 323 (980)
T KOG2021|consen 246 ELRIAACNCILAIVSKKMKP-MDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDT- 323 (980)
T ss_pred HHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCH-
Confidence 89999999998888643 23 122345555533331 11 2222111111111 11111100
Q ss_pred ccc---hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhc--cCh--hhHHHHHHHHHHhh-------cCC
Q 002876 166 AVE---QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF--SND--MERDYIMRVVCEAT-------LSP 231 (872)
Q Consensus 166 ~l~---~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~--~~~--~~~~~il~~l~~~~-------~~~ 231 (872)
... ...+..++|.+++.+. +...++-.+.+..++..+.+..+.- ... .....++..++.-+ ++.
T Consensus 324 ~~kqn~l~~ll~~vpyllq~l~--~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~ndd 401 (980)
T KOG2021|consen 324 LYKQNVLSILLEIVPYLLQFLN--NEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDD 401 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhccc
Confidence 010 1345557888889888 5555666666666666555443322 111 11123444333321 111
Q ss_pred C----------HHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002876 232 E----------VKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGD 301 (872)
Q Consensus 232 ~----------~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~ 301 (872)
+ .++|+..--.+..+....|+.+...+..-+...+..-..........|+..+..+++..+. .+...
T Consensus 402 n~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~---~~~~~ 478 (980)
T KOG2021|consen 402 NVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKN---NYFGL 478 (980)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcccc---ccccc
Confidence 1 2355555555566666667666555555554443333344445667777777777764321 11111
Q ss_pred CCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHH---Hc--CCcchhchHHHHH--h
Q 002876 302 FSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVAR---TV--GDDIVPLVMPFVE--E 374 (872)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~---~~--~~~~~~~l~~~l~--~ 374 (872)
++|+.. ..+.+..+++.+...-- ... .-+......+..+.+ .+ ...-.|.++.... .
T Consensus 479 nsgd~s------~~~vl~~~~~ll~tsqv--~~h--------~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~r 542 (980)
T KOG2021|consen 479 NSGDIS------TSQVLFLNELLLMTSQV--LAH--------DHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSR 542 (980)
T ss_pred cCcccc------HHHHHHHHHHHHHHccc--ccC--------CchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccch
Confidence 222210 01222233333332100 000 001111222222222 22 1223344444332 2
Q ss_pred hhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHh------------------------------------
Q 002876 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL------------------------------------ 418 (872)
Q Consensus 375 ~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l------------------------------------ 418 (872)
.+.+.+.++|.-+-+.+..+.... .+.+.+++..++..+...|
T Consensus 543 glhn~ne~Vr~RawYLF~RfVKlL-kkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~ 621 (980)
T KOG2021|consen 543 GLHNKNENVRLRAWYLFTRFVKLL-KKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNS 621 (980)
T ss_pred hccccccccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCC
Confidence 233444555544444444443332 1222333333333222222
Q ss_pred -----------------------------ccCCcHHHHH----HHHHHHHHhhhhccCCCCCCcc-cCccchHHHHHHHH
Q 002876 419 -----------------------------MQDPNNHVKD----TTAWTLGRMFEFLHGSTLETPI-INQGNCQQIISVLL 464 (872)
Q Consensus 419 -----------------------------~~d~~~~vr~----~a~~~l~~l~~~~~~~~~~~~~-~~~~~~~~il~~l~ 464 (872)
.+|+...+.- .++.++|.+++.++....+... -....+..++..++
T Consensus 622 paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil 701 (980)
T KOG2021|consen 622 PAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVIL 701 (980)
T ss_pred CHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHH
Confidence 2333333332 2344566666655432211110 11234556666666
Q ss_pred HhccC---ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccC
Q 002876 465 QSMKD---VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE 541 (872)
Q Consensus 465 ~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~ 541 (872)
..+.. ...+|.+....+++++..+ ++.+.|++|+.++.++....- ..+ ...+..++.++......
T Consensus 702 ~~ls~f~k~E~iRsavrft~hRmI~~l------g~~vlPfipklie~lL~s~d~-----kEm-vdfl~flsQLihkfk~~ 769 (980)
T KOG2021|consen 702 VTLSFFNKFENIRSAVRFTFHRMIPIL------GNKVLPFIPKLIELLLSSTDL-----KEM-VDFLGFLSQLIHKFKTD 769 (980)
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhc------chhhhcchHHHHHHHHhcCCH-----HHH-HHHHHHHHHHHHHHHHH
Confidence 66652 4677888888899998887 577999999999988775422 122 24566778888888888
Q ss_pred cHHHHHHHHHHHHHHHHHHHhh---hcCChhHHHHHHHHHHHHHHHHHHHH
Q 002876 542 TAPMVMQLVPLIMMELHQTLEA---QKLSSDEREKQNEIQGLLCGCLQVII 589 (872)
Q Consensus 542 ~~~~~~~l~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~ 589 (872)
..+.+.+++|+++..+-+.+.. +......-+. ..++...+..|..+.
T Consensus 770 ~~~ilnqmlppll~rIfsvi~r~a~p~dt~aa~ek-~~lrksy~~fLqtft 819 (980)
T KOG2021|consen 770 CYQILNQMLPPLLNRIFSVIERIAKPIDTAAAAEK-ILLRKSYCTFLQTFT 819 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCChhHHHHH-HHHHHHHHHHHHHHh
Confidence 8999999999998887776541 1111111122 245566666666665
No 95
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.011 Score=63.67 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHHhh-cCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcccc
Q 002876 90 KAQIKSFILKTLSSPA---HDARSTASQVVAKVAGIE-LPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSD 165 (872)
Q Consensus 90 ~~~i~~~ll~~l~~~~---~~vr~~~a~~l~~i~~~~-~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~ 165 (872)
+..+.+... .++++. .+.|..+..++..+...+ ++...-.+++-.+..++++.+...|+.....++.+....
T Consensus 20 k~~vlqe~r-~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~is--- 95 (865)
T KOG1078|consen 20 KTTVLQEAR-TFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKIS--- 95 (865)
T ss_pred HHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccc---
Confidence 334444444 555542 344555555555555432 222344678888999999999999988877776654332
Q ss_pred ccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHh
Q 002876 166 AVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (872)
Q Consensus 166 ~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (872)
...-.+.+.+...+. ..++..|..|+++|.++++
T Consensus 96 ----edviivtsslmkD~t--~~~d~yr~~AiR~L~~I~d 129 (865)
T KOG1078|consen 96 ----EDVIIVTSSLMKDMT--GKEDLYRAAAIRALCSIID 129 (865)
T ss_pred ----hhhhhhhHHHHhhcc--CCCcchhHHHHHHHHhhcC
Confidence 223334455555544 5677889999999998654
No 96
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.012 Score=62.01 Aligned_cols=253 Identities=15% Similarity=0.203 Sum_probs=169.1
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhc
Q 002876 4 EVTQILLNAQS-VDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (872)
Q Consensus 4 ~l~~~l~~~~s-~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (872)
++..+...++. .|+..|.+||+.|-++..+ |+++..+--++.. +..+....+|+..|-+.+..+
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~s--peclskCqlll~~-gs~pYs~mlAst~L~Klvs~~------------ 70 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELSES--PECLSKCQLLLER-GSYPYSQMLASTCLMKLVSRK------------ 70 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHcCC------------
Confidence 56677777755 7999999999999999888 9999887666665 556777888888887777643
Q ss_pred cCCChHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHhhcCC-----CCchhHHHHHHHhhcCCChhHHHHHHH
Q 002876 83 LSLDSSVKAQIKSFILKTLSSP----AHDARSTASQVVAKVAGIELPH-----KQWPELIGALLSNIHQLPPHTKQATLE 153 (872)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~----~~~vr~~~a~~l~~i~~~~~~~-----~~~~~l~~~l~~~l~~~~~~~r~~al~ 153 (872)
..+|-+.+-.|++-+++.+... .+.|...+++.++++.+..+-. ..+.+.+..+.+-++..+.+.-..++.
T Consensus 71 t~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~ 150 (1082)
T KOG1410|consen 71 TPLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQ 150 (1082)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHH
Confidence 2588999999999999999874 3678889999999999876531 145678888888888777777777889
Q ss_pred HHHHhhhhcc-ccc-------------cchhhHHHHHHHHHhcccC------CCC-CHHHHHHHHHHHHHhHh--hchhh
Q 002876 154 TLGYICEEVS-SDA-------------VEQDHVNKILTAVVQGMNA------SES-NNDVRLAATRALYNALG--FAQAN 210 (872)
Q Consensus 154 ~l~~i~~~~~-~~~-------------l~~~~~~~i~~~l~~~l~~------~~~-~~~vr~~al~~l~~~~~--~~~~~ 210 (872)
++..+..+.+ ++. +....+..++..-++.++. +|. ...+...+++.--+++. +++..
T Consensus 151 iLsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss 230 (1082)
T KOG1410|consen 151 ILSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSS 230 (1082)
T ss_pred HHHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccc
Confidence 9998888763 111 1012234444443333331 011 12233344444334332 23222
Q ss_pred ccCh-----------hhH-----HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhH-----hhHHHHHHHHHHHH
Q 002876 211 FSND-----------MER-----DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA-----PYIQDIFNITAKAV 269 (872)
Q Consensus 211 ~~~~-----------~~~-----~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~~~~l~~~~~~~~ 269 (872)
.+.. ..+ ...++..+.+..+-.++.-..++.|+..+++.....|. .|+..++.-+.+.+
T Consensus 231 ~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il 310 (1082)
T KOG1410|consen 231 TDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRIL 310 (1082)
T ss_pred cccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 2111 111 24678888888887888889999999999887654432 35566666666655
Q ss_pred hc
Q 002876 270 RE 271 (872)
Q Consensus 270 ~~ 271 (872)
++
T Consensus 311 ~n 312 (1082)
T KOG1410|consen 311 EN 312 (1082)
T ss_pred hC
Confidence 43
No 97
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.21 E-value=6.6e-06 Score=74.04 Aligned_cols=131 Identities=24% Similarity=0.415 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccc---cccc-----------hhh
Q 002876 106 HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS---DAVE-----------QDH 171 (872)
Q Consensus 106 ~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~---~~l~-----------~~~ 171 (872)
+.||++++.+++.++.+++| ..||++++.+.+.+++ ++.....++.+|..+.+++.. ..+. ...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 46899999999999999999 7999999999999987 477788899999988887621 0110 234
Q ss_pred HHHHHHHHHhcccCCCC--CHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 002876 172 VNKILTAVVQGMNASES--NNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECL 243 (872)
Q Consensus 172 ~~~i~~~l~~~l~~~~~--~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l 243 (872)
.+.++..+.+.+..... ..++...+++|+.+++.+++-..... ..+++.++..++ +++.+..|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~---~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN---SNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS---SSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc---HHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 66777777777663211 17899999999999988654322111 247888888884 455688888886
No 98
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.21 E-value=0.00011 Score=77.24 Aligned_cols=242 Identities=14% Similarity=0.167 Sum_probs=144.4
Q ss_pred CccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhh----ccCCchhhhhHHH
Q 002876 452 NQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVT----HREDAGESRLRTA 526 (872)
Q Consensus 452 ~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l----~~~~~~~~~v~~~ 526 (872)
...+...++..|+..+.. ...--+....++++++... ++.+.|+...+++.+...+ .+++ +|..-..
T Consensus 20 i~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~------~e~~~p~~~~il~~L~~il~~v~kNPs--nP~FnHy 91 (435)
T PF03378_consen 20 IQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVL------QEDILPIAVEILQHLTAILKEVSKNPS--NPRFNHY 91 (435)
T ss_dssp TTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHS------TTTTGGGHHHHHHHHHHHHHHHHTS-----HHHHHH
T ss_pred hhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccchhhh
Confidence 356778889888888863 1122234556777776655 5677888888777776655 3444 7888889
Q ss_pred HHHHHHHHHHccccCcH----HHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHh
Q 002876 527 AYETLNEVVRCSTDETA----PMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVF 602 (872)
Q Consensus 527 ~~~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 602 (872)
.+++++.+++....... .+-..++|.+...+.+.+. +..-.++..++.+++..+... +
T Consensus 92 lFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~-------------EF~PYvfQIla~Lle~~~~~~-----~ 153 (435)
T PF03378_consen 92 LFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQ-------------EFIPYVFQILAQLLELRPSSP-----L 153 (435)
T ss_dssp HHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-T-------------TTHHHHHHHHHHHHHHSS--S------
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHcCCCCC-----C
Confidence 99999999998765433 4556667777666654321 223345666677766655111 3
Q ss_pred hHhHHHHHHHHHHHHhccccchhhHHHH----HHHHHHHHhhhhhH--hhhHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002876 603 MQYADQMMGLFLRVFAIRSATAHEEAML----AIGALAYATGQDFL--KYMPEFYKYVEMGLQNFEDYQVCAITVGVVGD 676 (872)
Q Consensus 603 ~~~~~~i~~~l~~~l~~~~~~~~~~a~~----~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~ 676 (872)
.+....+++.++ ++.-..+..-+. .|..+....+..+. ..+..++..+-+.+.+... -..++.++..
T Consensus 154 p~~y~~L~~~Ll----~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~---D~~gF~LL~~ 226 (435)
T PF03378_consen 154 PDAYKQLFPPLL----SPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN---DHYGFDLLES 226 (435)
T ss_dssp -TTTGGGHHHHT----SGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC---HHHHHHHHHH
T ss_pred cHHHHHHHHHHc----CcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc---chHHHHHHHH
Confidence 333333333332 222222333334 44444444455443 5677788877777765432 2468899999
Q ss_pred HHHHHhc-cccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccc
Q 002876 677 LCRALED-KILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN 727 (872)
Q Consensus 677 l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~ 727 (872)
++..++. .+.||+++++..++..+++.. ....+...+..++.++...|.+
T Consensus 227 iv~~~p~~~l~~yl~~I~~lll~RLq~sk-T~kf~~~fv~F~~~~~~~~g~~ 277 (435)
T PF03378_consen 227 IVENLPPEALEPYLKQIFTLLLTRLQSSK-TEKFVKRFVVFLSLFAIKYGPD 277 (435)
T ss_dssp HHHHS-HHHHGGGHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHhhCC-cHHHHHHHHHHHHHHHHHcCHH
Confidence 9999985 589999999999999998765 3334445556666666666654
No 99
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.19 E-value=0.00028 Score=68.66 Aligned_cols=247 Identities=14% Similarity=0.185 Sum_probs=163.9
Q ss_pred HHhhhcCcchhhhHHHHHHHHHhhCCCCCCcch-HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcc
Q 002876 372 VEENITKQEWRQREAATYAFGSILEGPSPEKLV-PLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPI 450 (872)
Q Consensus 372 l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~-~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 450 (872)
+..+++++++..|.-|+.+|+.+.+...++.+. ..+..++.++...+ .|. ..-..++.++..+.... .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl-~D~--~~~~~~l~gl~~L~~~~--------~ 72 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL-DDH--ACVQPALKGLLALVKMK--------N 72 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh-ccH--hhHHHHHHHHHHHHhCc--------C
Confidence 456778899999999999999999887544443 34677788888888 443 33334477777777532 2
Q ss_pred cCccchHHHHHHHHHhccC---ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHH
Q 002876 451 INQGNCQQIISVLLQSMKD---VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAA 527 (872)
Q Consensus 451 ~~~~~~~~il~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~ 527 (872)
........++..+.+..+. ....|..+...+..+.+... ..+...-+.++..+++.+...+ ||+--..+
T Consensus 73 ~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~------~~l~~~~~~fv~~~i~~~~gEk--DPRnLl~~ 144 (262)
T PF14500_consen 73 FSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR------EALQSMGDDFVYGFIQLIDGEK--DPRNLLLS 144 (262)
T ss_pred CChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH------HHHHhchhHHHHHHHHHhccCC--CHHHHHHH
Confidence 3445567777777776553 24678888888888887753 2334455677888888887666 67655567
Q ss_pred HHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHH--HHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHh
Q 002876 528 YETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDERE--KQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQY 605 (872)
Q Consensus 528 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 605 (872)
++.+..++...+. .++.+.++..+...+--.... .++|+. ...+++..+..|+.. -..+
T Consensus 145 F~l~~~i~~~~~~--~~~~e~lFd~~~cYFPI~F~p---p~~dp~~IT~edLk~~L~~cl~s--------------~~~f 205 (262)
T PF14500_consen 145 FKLLKVILQEFDI--SEFAEDLFDVFSCYFPITFRP---PPNDPYGITREDLKRALRNCLSS--------------TPLF 205 (262)
T ss_pred HHHHHHHHHhccc--chhHHHHHHHhhheeeeeeeC---CCCCCCCCCHHHHHHHHHHHhcC--------------cHhh
Confidence 7777777777662 444444444433332111111 122221 111344334444431 2246
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhh-hhHhhhHHHHHHHHh
Q 002876 606 ADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQ-DFLKYMPEFYKYVEM 656 (872)
Q Consensus 606 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l~~ 656 (872)
++..++.+++-|.+....++.+++.++..++...|. .+.+|+..+|..+..
T Consensus 206 a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 206 APFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999985 588999999998864
No 100
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.02 Score=63.25 Aligned_cols=137 Identities=22% Similarity=0.193 Sum_probs=76.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhc-CCCChhHHHHHHHHHhcccccchhhhHHHhhhhcc
Q 002876 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN-DEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (872)
Q Consensus 5 l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~-~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (872)
+..++.+..+-|.++++-..-+|..+.+.+|...+..+=.+..+ .+.++.+|.+|..++... +
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-~--------------- 120 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-R--------------- 120 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-C---------------
Confidence 44555555666666666666666666665554433333223322 134566666666555331 1
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchh--HHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002876 84 SLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPE--LIGALLSNIHQLPPHTKQATLETLGYICEE 161 (872)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~--l~~~l~~~l~~~~~~~r~~al~~l~~i~~~ 161 (872)
-++...++...+.+++.|+++.||+.|+-++..+.+.+ + ..+++ +...+..++.+.++.+...|+..+..+..+
T Consensus 121 --~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-~-~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 121 --VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-K-DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred --hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-H-hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 13444555666666677777777777777776666544 2 23332 344444455566666666666666666543
No 101
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.17 E-value=3.3e-06 Score=60.13 Aligned_cols=55 Identities=38% Similarity=0.646 Sum_probs=50.2
Q ss_pred hhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHh
Q 002876 381 WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRM 437 (872)
Q Consensus 381 ~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l 437 (872)
|.+|.+++.+||.+++.. .+...++++.+++.+...+ +|+++.||.+|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~-~~~~~~~~~~~~~~L~~~L-~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGC-PELLQPYLPELLPALIPLL-QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTT-HHHHHHHHHHHHHHHHHHT-TSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhccc-HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHhcC
Confidence 889999999999988776 4778889999999999999 999999999999999965
No 102
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.0042 Score=65.34 Aligned_cols=304 Identities=17% Similarity=0.169 Sum_probs=176.0
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChh
Q 002876 136 LLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDM 215 (872)
Q Consensus 136 l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 215 (872)
+.....+.+..+|..|+..+-.+.+.. +....+++.....+. |....||.+|++.+.-+-...+.....+.
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~-------kL~~~~Y~~A~~~ls--D~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF-------KLSKACYSRAVKHLS--DDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc-------cccHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 555666667777777777765554411 223445666677777 88899999999998887665532221111
Q ss_pred ----hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 002876 216 ----ERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDE 290 (872)
Q Consensus 216 ----~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~ 290 (872)
-.+..+..++..++|-+..+|..|.+.|+.+-+...+++...+. +++. + .|. |. .+..
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms-------~----lRR-----kr-~ahk 336 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMS-------R----LRR-----KR-TAHK 336 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhh-------h----hhh-----hh-hccc
Confidence 12566777888899999999999999999876655444433332 1111 0 000 00 0000
Q ss_pred HHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCC---cccCCccchHhHHHHHHHHHHHHHcCCcchhc
Q 002876 291 EIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEED---QDQDEGAWNIAMAGGTCLGLVARTVGDDIVPL 367 (872)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d---~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 367 (872)
.+.... . .|+|+- .+ .+.+| +++|++.-++.. . -+ .|
T Consensus 337 rpk~l~--s---~GewSs-----Gk---------------~~~advpsee~d~~~~siI~-s-GA-------CG------ 376 (823)
T KOG2259|consen 337 RPKALY--S---SGEWSS-----GK---------------EWNADVPSEEDDEEEESIIP-S-GA-------CG------ 376 (823)
T ss_pred chHHHH--h---cCCccc-----Cc---------------cccccCchhhcccccccccc-c-cc-------cc------
Confidence 000000 0 000000 00 00000 000010001100 0 00 01
Q ss_pred hHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCC
Q 002876 368 VMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLE 447 (872)
Q Consensus 368 l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (872)
.+...+.|+-..+|.||+..++.++.... . +-...+.++...+ +|+...||..|..++..++.++.
T Consensus 377 ---A~VhGlEDEf~EVR~AAV~Sl~~La~ssP-~----FA~~aldfLvDMf-NDE~~~VRL~ai~aL~~Is~~l~----- 442 (823)
T KOG2259|consen 377 ---ALVHGLEDEFYEVRRAAVASLCSLATSSP-G----FAVRALDFLVDMF-NDEIEVVRLKAIFALTMISVHLA----- 442 (823)
T ss_pred ---eeeeechHHHHHHHHHHHHHHHHHHcCCC-C----cHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhe-----
Confidence 12233445557899999999999987652 2 2355677888899 99999999999999999999864
Q ss_pred CcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHH
Q 002876 448 TPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTA 526 (872)
Q Consensus 448 ~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~ 526 (872)
... ..++.++..|.| ++++|+..-..|.. + .-.-...+...+..+++.+.... +=|..
T Consensus 443 ---i~e----eql~~il~~L~D~s~dvRe~l~elL~~----~------~~~d~~~i~m~v~~lL~~L~kyP----qDrd~ 501 (823)
T KOG2259|consen 443 ---IRE----EQLRQILESLEDRSVDVREALRELLKN----A------RVSDLECIDMCVAHLLKNLGKYP----QDRDE 501 (823)
T ss_pred ---ecH----HHHHHHHHHHHhcCHHHHHHHHHHHHh----c------CCCcHHHHHHHHHHHHHHhhhCC----CCcHH
Confidence 333 556666777777 67887765443332 2 12223467777888888887653 23456
Q ss_pred HHHHHHHHHHcccc
Q 002876 527 AYETLNEVVRCSTD 540 (872)
Q Consensus 527 ~~~~l~~l~~~~~~ 540 (872)
.+.|++.+.+..+.
T Consensus 502 i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 502 ILRCMGRIGQNHRR 515 (823)
T ss_pred HHHHHHHHhccChh
Confidence 77888887777654
No 103
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.11 E-value=0.0002 Score=71.82 Aligned_cols=202 Identities=13% Similarity=0.167 Sum_probs=141.8
Q ss_pred HHHHHhccCCcHHHHHHHHH-HHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC--ChhHHHHHHHHHHHHHHhcc
Q 002876 413 FMLTALMQDPNNHVKDTTAW-TLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFE 489 (872)
Q Consensus 413 ~l~~~l~~d~~~~vr~~a~~-~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~ 489 (872)
..+..+++++...-|..|+. ..+-+++.. ....++++..++..+++.+.| +...+.-|...|..+|++-
T Consensus 290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~s-------fsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q- 361 (516)
T KOG2956|consen 290 DLLKEISGSERASERKEALSELPKMLCEGS-------FSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ- 361 (516)
T ss_pred HHHHhccCccchhHHHHHHHHHHHHHHccc-------hhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc-
Confidence 33344424445556666655 333333321 124578899999999999997 3567778888899998863
Q ss_pred cCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChh
Q 002876 490 DAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSD 569 (872)
Q Consensus 490 ~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 569 (872)
+..+..+....+..++..-.+.. +..++.+.=+|+..+....|... +..+.|.++. .|
T Consensus 362 -----~~~l~DstE~ai~K~Leaa~ds~--~~v~~~Aeed~~~~las~~P~~~---I~~i~~~Ilt------------~D 419 (516)
T KOG2956|consen 362 -----PARLFDSTEIAICKVLEAAKDSQ--DEVMRVAEEDCLTTLASHLPLQC---IVNISPLILT------------AD 419 (516)
T ss_pred -----hHhhhchHHHHHHHHHHHHhCCc--hhHHHHHHHHHHHHHHhhCchhH---HHHHhhHHhc------------Cc
Confidence 67788888888888888877765 45566555666677777776432 2223333332 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh-hhhHhhhH
Q 002876 570 EREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG-QDFLKYMP 648 (872)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~ 648 (872)
++.. ..++.++..++..+..++ +.+.++.+.|.+++..++.+..+|..++-||-.++...| +.+.||+.
T Consensus 420 ~~~~-----~~~iKm~Tkl~e~l~~Ee-----L~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~ 489 (516)
T KOG2956|consen 420 EPRA-----VAVIKMLTKLFERLSAEE-----LLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLE 489 (516)
T ss_pred chHH-----HHHHHHHHHHHhhcCHHH-----HHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhh
Confidence 3321 136678888888877653 788899999999999999999999999999999999999 89999988
Q ss_pred HHHHHH
Q 002876 649 EFYKYV 654 (872)
Q Consensus 649 ~i~~~l 654 (872)
++-..-
T Consensus 490 ~Lt~sk 495 (516)
T KOG2956|consen 490 QLTSSK 495 (516)
T ss_pred hccHHH
Confidence 755443
No 104
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.10 E-value=0.00096 Score=64.98 Aligned_cols=246 Identities=14% Similarity=0.156 Sum_probs=159.4
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChh
Q 002876 136 LLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDM 215 (872)
Q Consensus 136 l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 215 (872)
|-..+.++++..|..|+.+|+.+.+.+.++.+....+..++..+...+. +...-..+++.+..++.. . .+.. .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~----D~~~~~~~l~gl~~L~~~-~-~~~~-~ 76 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD----DHACVQPALKGLLALVKM-K-NFSP-E 76 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc----cHhhHHHHHHHHHHHHhC-c-CCCh-h
Confidence 4456788899999999999999999996677877788889999888876 333444447777776632 1 1221 1
Q ss_pred hHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHHH
Q 002876 216 ERDYIMRVVCEAT--LSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVR-EDEEPVALQAIEFWSSVCDEEI 292 (872)
Q Consensus 216 ~~~~il~~l~~~~--~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~a~~~~~~l~~~~~ 292 (872)
....+++.+++-. +.-....|..+++.+..+++++...+...-..++..++..+. ..|+.....+++++..+....
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~- 155 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF- 155 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc-
Confidence 1245666666533 233567799999999999998877665544566666666665 356777777777777665421
Q ss_pred HHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHh----cccCCcccCCccchHhHHHHHHHHHHHHHc--CCcchh
Q 002876 293 DILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLL----KQEEDQDQDEGAWNIAMAGGTCLGLVARTV--GDDIVP 366 (872)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~----~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~--~~~~~~ 366 (872)
.. .+..+.++..+.-+.- ....|+ + .....+.-..+..++ ...+-|
T Consensus 156 -------------------~~-~~~~e~lFd~~~cYFPI~F~pp~~dp------~--~IT~edLk~~L~~cl~s~~~fa~ 207 (262)
T PF14500_consen 156 -------------------DI-SEFAEDLFDVFSCYFPITFRPPPNDP------Y--GITREDLKRALRNCLSSTPLFAP 207 (262)
T ss_pred -------------------cc-chhHHHHHHHhhheeeeeeeCCCCCC------C--CCCHHHHHHHHHHHhcCcHhhHH
Confidence 11 3333444444433321 111111 1 111223333444443 245567
Q ss_pred chHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Q 002876 367 LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA 417 (872)
Q Consensus 367 ~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~ 417 (872)
..+|++.+.+.++...++.-++..+...++..+...+.+|...++..+...
T Consensus 208 ~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~E 258 (262)
T PF14500_consen 208 FAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFE 258 (262)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 889999999998888899999999998888776666777777777666543
No 105
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.08 E-value=0.00036 Score=70.10 Aligned_cols=202 Identities=12% Similarity=0.157 Sum_probs=129.7
Q ss_pred HHHHHHHhccCCh--hHHHHHHHHHHHH-HHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHH
Q 002876 459 IISVLLQSMKDVP--NVAEKACGALYFL-AQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVV 535 (872)
Q Consensus 459 il~~l~~~l~d~~--~v~~~a~~al~~l-~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~ 535 (872)
.+..++..+.++. .-+..|..-|..+ |++ .-....+|+..|+-.+++.+.+.. +...+..++..|..+.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~------sfsvWeq~f~~iL~~l~EvL~d~~--~~~~k~laLrvL~~ml 358 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEG------SFSVWEQHFAEILLLLLEVLSDSE--DEIIKKLALRVLREML 358 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHcc------chhHHHHHHHHHHHHHHHHHccch--hhHHHHHHHHHHHHHH
Confidence 3444555555432 2344444433333 322 134556799999999999998855 6778889999999999
Q ss_pred HccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHH-HHHHHHHhCCCcchhhHhhHhHHHHHHHHH
Q 002876 536 RCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGC-LQVIIQKLGSSEQTKYVFMQYADQMMGLFL 614 (872)
Q Consensus 536 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~ 614 (872)
+..+..+..+.+..+..+++.-.+ ..++ +...+-++ +..+...++-. .+..+.+
T Consensus 359 ~~Q~~~l~DstE~ai~K~Leaa~d---------s~~~----v~~~Aeed~~~~las~~P~~---------~I~~i~~--- 413 (516)
T KOG2956|consen 359 TNQPARLFDSTEIAICKVLEAAKD---------SQDE----VMRVAEEDCLTTLASHLPLQ---------CIVNISP--- 413 (516)
T ss_pred HhchHhhhchHHHHHHHHHHHHhC---------Cchh----HHHHHHHHHHHHHHhhCchh---------HHHHHhh---
Confidence 998877766666555554443322 1111 12223333 33333322221 1222222
Q ss_pred HHHhccccchhhHHHHHHHHHHHHhh-hhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHh-ccccccHHHH
Q 002876 615 RVFAIRSATAHEEAMLAIGALAYATG-QDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALE-DKILPYCDGI 692 (872)
Q Consensus 615 ~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i 692 (872)
++...+...-..++..+.++...+. +.+.+.++.+.|.++++.++.+. .||+.++.||-.+...+| +.+.||+.++
T Consensus 414 -~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS-~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 414 -LILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSS-TVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred -HHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchH-HhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 2223444444566678888888887 46778999999999999987654 899999999999999999 8999999865
Q ss_pred HHH
Q 002876 693 MTQ 695 (872)
Q Consensus 693 ~~~ 695 (872)
-..
T Consensus 492 t~s 494 (516)
T KOG2956|consen 492 TSS 494 (516)
T ss_pred cHH
Confidence 443
No 106
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.035 Score=60.96 Aligned_cols=278 Identities=14% Similarity=0.191 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHH-Hhccccchhh
Q 002876 548 QLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRV-FAIRSATAHE 626 (872)
Q Consensus 548 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~-l~~~~~~~~~ 626 (872)
.++..+...+.+... .+++++..+.+. ..++-++..+...++.. -.+.++.++...... +...+..+-.
T Consensus 458 ~ll~~L~~~l~q~~a---a~d~~p~s~~~t-Eaci~~~~sva~~~~~t------~~~~i~rl~~~~asik~S~~n~ql~~ 527 (982)
T KOG2022|consen 458 GLLDFLIDTLEQALA---AGDEDPDSLNRT-EACIFQFQSVAEYLGET------ESTWIPRLFETSASIKLSAPNPQLLS 527 (982)
T ss_pred HHHHHHHHHHHHhhh---ccCCCchHHHHH-HHHHHHHHHHHhhcCcc------hhHHHHHHHHhccccccccCChhHHH
Confidence 445555555555443 234466666433 35777888888888876 334444433333222 1223566677
Q ss_pred HHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCC
Q 002876 627 EAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLH 706 (872)
Q Consensus 627 ~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 706 (872)
.+...+|.++..+++.- -|++..+|.+++.+.++ +....++..+..+++.++.++.||+++++..+-..+......
T Consensus 528 Tss~~igs~s~~l~e~P-~~ln~sl~~L~~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~ 603 (982)
T KOG2022|consen 528 TSSDLIGSLSNWLGEHP-MYLNPSLPLLFQGLHNS---KESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAK 603 (982)
T ss_pred HHHHHHHHHHHHHhcCC-cccCchHHHHHHHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccC
Confidence 88888998888877542 35677888888888654 334456667999999999999999999999999998877666
Q ss_pred CCCchhHHHHHHHHHHHhc-cchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCc--
Q 002876 707 RSVKPPIFSCFGDIALAIG-ENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPK-- 783 (872)
Q Consensus 707 ~~v~~~~~~~l~~i~~~~~-~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 783 (872)
...+..++.++|-+..... +....|+..++..+..-++..-.++.++.+...+. .. .+.++..+..++....+
T Consensus 604 ~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~-~~---~l~~iS~LftSL~~~~~~~ 679 (982)
T KOG2022|consen 604 DSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRI-AF---QLNTISALFTSLINKKDII 679 (982)
T ss_pred chHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH-HH---HHHHHHHHHhccCCCCccc
Confidence 6788889999999988765 44567888888888877765422222333222221 11 23344455554432200
Q ss_pred ----c--c-------ccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCc-cccccCchHHHHHHHH
Q 002876 784 ----T--Q-------LLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNA-GPLIQQSVSSKDFLNE 846 (872)
Q Consensus 784 ----~--~-------~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~-~~~~~~~~~v~~~l~~ 846 (872)
+ + .+......+++.+.++++.-..+..+...+...++.-....++.| .|++++ +-.|+-+
T Consensus 680 d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~---l~~Fi~r 753 (982)
T KOG2022|consen 680 DTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPS---LCPFIVR 753 (982)
T ss_pred cccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHH---HHHHHHH
Confidence 0 0 111234456666666655323466677777777776677777777 666665 4445444
No 107
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.04 E-value=1.1e-05 Score=69.51 Aligned_cols=109 Identities=16% Similarity=0.220 Sum_probs=83.6
Q ss_pred hHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHH-HHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCC
Q 002876 368 VMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446 (872)
Q Consensus 368 l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~-~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 446 (872)
+++.+.+.+.+.+|..|+.++.+++.++... +......+. .+++.+...+ +++++.++..+++++++++...+.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l-~~~~~~v~~~a~~~L~~l~~~~~~--- 82 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLL-KSEDEEVVKAALWALRNLAAGPED--- 82 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHH-hCCCHHHHHHHHHHHHHHccCcHH---
Confidence 4455556666778999999999999999875 233344444 7889999999 999999999999999999986431
Q ss_pred CCcccCccch-HHHHHHHHHhccC-ChhHHHHHHHHHHHHH
Q 002876 447 ETPIINQGNC-QQIISVLLQSMKD-VPNVAEKACGALYFLA 485 (872)
Q Consensus 447 ~~~~~~~~~~-~~il~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
....+. ..+++.+++.+++ +..++..++++|.+++
T Consensus 83 ----~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 ----NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred ----HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 112222 2368888888886 6899999999999886
No 108
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.0054 Score=66.49 Aligned_cols=155 Identities=12% Similarity=0.161 Sum_probs=108.0
Q ss_pred cchHHHHHHHHHhccC--ChhHHHHHHHHHHHHHHhcccCCCCCCCCch--hHHHHHHHHHHhhccCCchhhhhHHHHHH
Q 002876 454 GNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTP--FFQEIVQALLTVTHREDAGESRLRTAAYE 529 (872)
Q Consensus 454 ~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~--~l~~i~~~l~~~l~~~~~~~~~v~~~~~~ 529 (872)
--+..++|.|+..++. +..+...||.||..+|+.++.. ...+.. .++-+++.|+.+- --.+.+++++
T Consensus 207 fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S---~a~vV~~~aIPvl~~kL~~Ie------yiDvAEQ~Lq 277 (1051)
T KOG0168|consen 207 FPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS---SAIVVDEHAIPVLLEKLLTIE------YIDVAEQSLQ 277 (1051)
T ss_pred ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch---hheeecccchHHHHHhhhhhh------hhHHHHHHHH
Confidence 3456889999999885 6899999999999999998754 444444 3455555554432 2347788999
Q ss_pred HHHHHHHccccCcHHHHHHHHHH--HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHH
Q 002876 530 TLNEVVRCSTDETAPMVMQLVPL--IMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYAD 607 (872)
Q Consensus 530 ~l~~l~~~~~~~~~~~~~~l~~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 607 (872)
++..+.+..+..+..- ..++.. .++.+.. ..+..++.+...++..+.++ -..++-
T Consensus 278 ALE~iSR~H~~AiL~A-G~l~a~LsylDFFSi----------------~aQR~AlaiaaN~Cksi~sd------~f~~v~ 334 (1051)
T KOG0168|consen 278 ALEKISRRHPKAILQA-GALSAVLSYLDFFSI----------------HAQRVALAIAANCCKSIRSD------EFHFVM 334 (1051)
T ss_pred HHHHHHhhccHHHHhc-ccHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHhcCCCc------cchHHH
Confidence 9999999888654321 111111 1122211 23445777777777777776 345666
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 002876 608 QMMGLFLRVFAIRSATAHEEAMLAIGALAYATG 640 (872)
Q Consensus 608 ~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 640 (872)
..+|.+..+|+..+...-+.++.++.+++..+.
T Consensus 335 ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 335 EALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 788999999999999899999999999998764
No 109
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.02 E-value=0.00033 Score=77.40 Aligned_cols=388 Identities=14% Similarity=0.131 Sum_probs=206.5
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhccc
Q 002876 412 NFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFED 490 (872)
Q Consensus 412 ~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~ 490 (872)
..+...+ ...+..+| .+...|.++++....+ ..-.-..+++.|++.|+. +..+...+...|.++.-.-+
T Consensus 253 kk~~~l~-~kQeqLlr-v~~~lLlNLAed~~ve-------~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E- 322 (708)
T PF05804_consen 253 KKLQTLI-RKQEQLLR-VAFYLLLNLAEDPRVE-------LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE- 322 (708)
T ss_pred HHHHHHH-HHHHHHHH-HHHHHHHHHhcChHHH-------HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-
Confidence 3344444 44444455 5567788888765311 112234677778888874 67777777777777753211
Q ss_pred CCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhH
Q 002876 491 AISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDE 570 (872)
Q Consensus 491 ~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 570 (872)
++..+. -..+++.|.+.+... +..++..++..|..+.....-+..-.-..++|.+...+.. ++
T Consensus 323 ---NK~~m~--~~giV~kL~kLl~s~---~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d--------~~- 385 (708)
T PF05804_consen 323 ---NKDEMA--ESGIVEKLLKLLPSE---NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD--------PN- 385 (708)
T ss_pred ---HHHHHH--HcCCHHHHHHHhcCC---CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC--------Cc-
Confidence 012121 124677777777654 4556667777776665443322111123466777666632 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHhhhhhHhhh-H
Q 002876 571 REKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI-RSATAHEEAMLAIGALAYATGQDFLKYM-P 648 (872)
Q Consensus 571 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~ 648 (872)
.+..++.+|..+ +..+..+..+ .+. ..++.+++++-. ++..+..+++.++.+++..-.. ..-.. .
T Consensus 386 ------~~~val~iLy~L----S~dd~~r~~f-~~T-dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn-aqlm~~g 452 (708)
T PF05804_consen 386 ------FREVALKILYNL----SMDDEARSMF-AYT-DCIPQLMQMLLENSEEEVQLELIALLINLALNKRN-AQLMCEG 452 (708)
T ss_pred ------hHHHHHHHHHHh----ccCHhhHHHH-hhc-chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH-HHHHHhc
Confidence 112234333333 2222222212 222 345666665443 4445555555555555532221 11111 1
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHh--cc
Q 002876 649 EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAI--GE 726 (872)
Q Consensus 649 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~--~~ 726 (872)
..++.|++..-...++ ..+.++..++.+-+. ...-..+.+..+...+...+ +. ...+.|+|.++.-. +.
T Consensus 453 ~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~-~k~~f~~~i~~L~~~v~~~~-~e---e~~vE~LGiLaNL~~~~l 523 (708)
T PF05804_consen 453 NGLQSLMKRALKTRDP----LLLKLIRNISQHDGP-LKELFVDFIGDLAKIVSSGD-SE---EFVVECLGILANLTIPDL 523 (708)
T ss_pred CcHHHHHHHHHhcccH----HHHHHHHHHHhcCch-HHHHHHHHHHHHHHHhhcCC-cH---HHHHHHHHHHHhcccCCc
Confidence 2344444433223231 234566666655431 22222334444555555543 33 34555666655432 44
Q ss_pred chHHhHH--HHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchH--HHHHHHHHHh
Q 002876 727 NFEKYLM--YAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAP--HILQFLDSLY 802 (872)
Q Consensus 727 ~~~~~l~--~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~i~~~l~~~l 802 (872)
++..++. .++|.+.+.+..... +| ++.-.++..++.+... ....+.+. .+++.+..++
T Consensus 524 d~~~ll~~~~llp~L~~~L~~g~~---~d--------Dl~LE~Vi~~gtla~d-------~~~A~lL~~sgli~~Li~LL 585 (708)
T PF05804_consen 524 DWAQLLQEYNLLPWLKDLLKPGAS---ED--------DLLLEVVILLGTLASD-------PECAPLLAKSGLIPTLIELL 585 (708)
T ss_pred CHHHHHHhCCHHHHHHHHhCCCCC---Ch--------HHHHHHHHHHHHHHCC-------HHHHHHHHhCChHHHHHHHH
Confidence 6777776 589999998875521 11 2222233333333321 12223332 5677777777
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 002876 803 MEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISK 868 (872)
Q Consensus 803 ~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 868 (872)
.....|+++.-.++.+|..+..+ ++.....+.+.+ ++.-|-.+++++++.+|+.+..+...|.+
T Consensus 586 ~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~-~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 586 NAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETE-IPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccc-hHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 76567899999999999999886 555555556555 55666668889999999999988877654
No 110
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.94 E-value=0.15 Score=64.37 Aligned_cols=561 Identities=15% Similarity=0.175 Sum_probs=293.8
Q ss_pred hhHHHHHHH-hhcCCChhHHHHHHHHHHHhhhhcc------ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q 002876 130 PELIGALLS-NIHQLPPHTKQATLETLGYICEEVS------SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYN 202 (872)
Q Consensus 130 ~~l~~~l~~-~l~~~~~~~r~~al~~l~~i~~~~~------~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~ 202 (872)
..++..... .+...++..|..+..++..++.... |..+ +.+..++..+..... .++++.+|...+..+..
T Consensus 479 ~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~--~~v~~vl~~ll~~ai-a~~~~~i~~~v~~~l~~ 555 (2341)
T KOG0891|consen 479 TLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHAL--QVVKEVLSALLTVAI-ADTDPDIRIRVLSSLNE 555 (2341)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHH--HHHHHHHHHHHHHhc-cCCCcchhhhHHhhhcc
Confidence 444444333 3344567788888776666555431 1111 234445555544333 38888888887776662
Q ss_pred hHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhc-CChhhHHHHH
Q 002876 203 ALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE-DEEPVALQAI 281 (872)
Q Consensus 203 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~a~ 281 (872)
.|......+..+..++..+.+.....+..+...++.+....|.++.+++........+-+.- ....+...+.
T Consensus 556 -------~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a 628 (2341)
T KOG0891|consen 556 -------RFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESA 628 (2341)
T ss_pred -------chhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHH
Confidence 12211112456667777777788888888888888888877766666655333322222211 0000000000
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcC
Q 002876 282 EFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG 361 (872)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~ 361 (872)
.....+... ....+.++...++..+...+...+ -.+-+++..+++.|+...|
T Consensus 629 ~~~~~~i~~-------------------~~~~i~~~v~~~l~~~~~~~~~~~---------s~~~~~~~~~~~eL~~v~g 680 (2341)
T KOG0891|consen 629 KLLCELIIS-------------------SPVLISPYVGPILLVLLPKLQDPS---------SGVEKAVLETIGELCAVGG 680 (2341)
T ss_pred HHhhHHHHH-------------------HHHHHHhhcCchHHHHHHHHhccc---------hhhHHHHHHHHHHHHHhcc
Confidence 000000000 011223333333333333222100 0222333333333333333
Q ss_pred CcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccC-CcHHHHHHHHHHHHHhhhh
Q 002876 362 DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD-PNNHVKDTTAWTLGRMFEF 440 (872)
Q Consensus 362 ~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d-~~~~vr~~a~~~l~~l~~~ 440 (872)
..+....+..++.+...+ .| .+..-|.++.++++++.+.
T Consensus 681 ---------------------------------------~~~~~~~~~~~~~~~~~l-~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 681 ---------------------------------------EEMVKWVDELFSLIIKML-QDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred ---------------------------------------chhhhccchHHHHHHHHH-HHhhhhhchhHHHHHhhhhhcc
Confidence 122222233344444444 33 4556778888899888886
Q ss_pred ccCCCCCCcccCccchHHHHHHHHHhccC--ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHH--HHhhccC
Q 002876 441 LHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQAL--LTVTHRE 516 (872)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l--~~~l~~~ 516 (872)
..- ........+.++..++..+.. ...+|..+...++.. ..+.||........ .+.....
T Consensus 721 ~~~-----~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~-----------g~~d~~~~~~~~~~~~~~~~~~~ 784 (2341)
T KOG0891|consen 721 TGY-----VVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLL-----------GALDPYKHKVTEGTSASKISSEQ 784 (2341)
T ss_pred cce-----EecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh-----------cccchhHHHHHhhhhhHhhhhcc
Confidence 431 112234455666666666653 345666666555532 34445555444443 2222222
Q ss_pred CchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 002876 517 DAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSE 596 (872)
Q Consensus 517 ~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 596 (872)
.. .+..+.. .-..+.... ....|... +..++..+. |+....++. ....++..+...++..
T Consensus 785 ~k-~~~~~~~---~~~~~~~~~-~e~~p~v~--I~~l~~~l~-----------d~~~~~~l~-~~~~a~~~i~~~~~~~- 844 (2341)
T KOG0891|consen 785 IK-SDIDISL---LESGVNPSN-DEYYPAVT--IHALMGILK-----------DPSLSIHHT-AVAQAIMHIFQSLGLK- 844 (2341)
T ss_pred cc-ccchHHH---HHhhhhhhh-hhhhhHHH--HHHHhhhhh-----------hhhhHHHHH-HhhhchhHHHHhhccc-
Confidence 11 0000000 000000000 11111100 011111111 111111111 2334444555556655
Q ss_pred chhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002876 597 QTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGD 676 (872)
Q Consensus 597 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~ 676 (872)
...+.+++++.++.......+..++..+.-++....-......+|++.+...+..... .+..+......++.+
T Consensus 845 -----~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~~~h~~~~~~~i~~~i~~~~~--~~~~l~~~~~~l~~~ 917 (2341)
T KOG0891|consen 845 -----CVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIVRQHIRPYMESIFTLIKDFWP--PDTSLQITIISLIED 917 (2341)
T ss_pred -----hhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhccchhHhhhhhhHHHHHHhhhh--hHHHHHHHHHHHHHH
Confidence 6778889999888888776677777766666666555566666666665555544432 233455566778888
Q ss_pred HHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccH
Q 002876 677 LCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDM 756 (872)
Q Consensus 677 l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~ 756 (872)
+...++..+..|++......+..+.... ... .....-+..-....|.....|...++|.+++.+....
T Consensus 918 i~~~l~~~f~~~l~~~~~~~l~~~~~~~--s~~-~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~--------- 985 (2341)
T KOG0891|consen 918 IAVALGGEFKKYLPELLPTMLTVLQHDK--SKD-RVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPT--------- 985 (2341)
T ss_pred HHHHHHhHHHHhhhhhccchheeecccc--cch-HHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhh---------
Confidence 8888988899999988877776663331 111 1222222222344566777888888888888775541
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccccc
Q 002876 757 TEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQ 835 (872)
Q Consensus 757 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~ 835 (872)
....+++.+..+...+... ..+..|...+...+...+.. . .+++..++..++.+.+..|..+..+.+
T Consensus 986 --~~~~~~~~~l~t~~~l~~~-------~~~~~~~s~i~~~~~r~l~~--s-~el~~~~~~~l~~l~~~~~~~~~i~~p 1052 (2341)
T KOG0891|consen 986 --VPLSIRKSALITIGRLAQQ-------VDLSEYASRIIHPLVRVLSS--S-PELRDVIMDTLIALVKQLGKDFAIFIP 1052 (2341)
T ss_pred --hhHHHHhhHHHHHHHHHHh-------hHHHHHHHHHHHHHHHhhcc--c-hhHHHHHHHHHHHHHHhhcCceeehHH
Confidence 2346677777777777654 23456788888888888775 2 899999999999999999988876555
No 111
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.016 Score=59.19 Aligned_cols=151 Identities=14% Similarity=0.158 Sum_probs=117.1
Q ss_pred cCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccch
Q 002876 377 TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC 456 (872)
Q Consensus 377 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 456 (872)
.+..|+.|......+..+....- -.-.+.+..++..+.... .|++..+|..|+..+++.....|. -...+.
T Consensus 227 ts~~~~~ritd~Af~ael~~~~~-l~~~~lL~s~~~~la~ka-~dp~a~~r~~a~r~L~~~as~~P~-------kv~th~ 297 (533)
T KOG2032|consen 227 TSEKENGRITDIAFFAELKRPKE-LDKTGLLGSVLLSLANKA-TDPSAKSRGMACRGLGNTASGAPD-------KVRTHK 297 (533)
T ss_pred chhcccchHHHHHHHHHHhCccc-ccccccHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHhccCcH-------HHHHhH
Confidence 34558889888877777765321 111244577777777777 999999999999999999998653 345788
Q ss_pred HHHHHHHHHhccC--ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHH
Q 002876 457 QQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534 (872)
Q Consensus 457 ~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l 534 (872)
..++..++.+|.| +..|.-.+..+|..+.+... ...+.+|+-++--.+.+.+.+. ++++|..++..++.+
T Consensus 298 ~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~-----~~~l~~~~l~ialrlR~l~~se---~~~~R~aa~~Lfg~L 369 (533)
T KOG2032|consen 298 TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS-----NDDLESYLLNIALRLRTLFDSE---DDKMRAAAFVLFGAL 369 (533)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh-----hcchhhhchhHHHHHHHHHHhc---ChhhhhhHHHHHHHH
Confidence 8999999999986 57898889999988887653 5678889888888888888765 578999999999999
Q ss_pred HHccccCcHH
Q 002876 535 VRCSTDETAP 544 (872)
Q Consensus 535 ~~~~~~~~~~ 544 (872)
....|.....
T Consensus 370 ~~l~g~~~e~ 379 (533)
T KOG2032|consen 370 AKLAGGGWEE 379 (533)
T ss_pred HHHcCCCchh
Confidence 9998865433
No 112
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.061 Score=58.35 Aligned_cols=411 Identities=13% Similarity=0.127 Sum_probs=214.2
Q ss_pred HHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHH
Q 002876 350 GTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDT 429 (872)
Q Consensus 350 ~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~ 429 (872)
..++..|+.......+..+-.++.+.+-+.+..++.+|+..=-.+.... ....... ...+.... ++.+..+++.
T Consensus 118 ~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~-~~~vkrw----~neiqea~-~s~~~m~QyH 191 (865)
T KOG1078|consen 118 AAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPIS-FDVVKRW----ANEVQEAV-NSDNIMVQYH 191 (865)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhccc-HHHHHHH----HHhhhhcc-CcHHHHHHHH
Confidence 3567777787777777888888888888888777776653222222111 1111111 12223333 4455567777
Q ss_pred HHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHH
Q 002876 430 TAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQAL 509 (872)
Q Consensus 430 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l 509 (872)
|+..+.++-..-. -....++..+.+....++- |.+.+.+....+-+. ..+....+.+.+
T Consensus 192 alglLyqirk~dr-----------la~sklv~~~~~~~~~~~~----A~~~lir~~~~~l~~------~~~~~s~~~~fl 250 (865)
T KOG1078|consen 192 ALGLLYQIRKNDR-----------LAVSKLVQKFTRGSLKSPL----AVCMLIRIASELLKE------NQQADSPLFPFL 250 (865)
T ss_pred HHHHHHHHHhhhH-----------HHHHHHHHHHccccccchh----HHHHHHHHHHHHhhh------cccchhhHHHHH
Confidence 7777766655321 1122333333331111111 222222222221110 122333444555
Q ss_pred HHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 002876 510 LTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVII 589 (872)
Q Consensus 510 ~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 589 (872)
-.++.+. ...+...+..++..+-...+....| ....+..++.. ++. .+|..+..+|..++
T Consensus 251 ~s~l~~K---~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flss--------------p~~--~lRfaAvRtLnkvA 310 (865)
T KOG1078|consen 251 ESCLRHK---SEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSS--------------PKV--ALRFAAVRTLNKVA 310 (865)
T ss_pred HHHHhch---hHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcC--------------cHH--HHHHHHHHHHHHHH
Confidence 5555543 2334445556665555555544444 12222222211 111 35667888888887
Q ss_pred HHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhh-hhHhhhHHHHHHHHhhhcCCChhhHHH
Q 002876 590 QKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQ-DFLKYMPEFYKYVEMGLQNFEDYQVCA 668 (872)
Q Consensus 590 ~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~v~~ 668 (872)
...+.. ....... +-.+..+.+ |.-+..++..+.+...+ .....+.++-.++. .+.+ +.+.
T Consensus 311 m~~P~~------v~~cN~e----lE~lItd~N---rsIat~AITtLLKTG~e~sv~rLm~qI~~fv~-disD----eFKi 372 (865)
T KOG1078|consen 311 MKHPQA------VTVCNLD----LESLITDSN---RSIATLAITTLLKTGTESSVDRLMKQISSFVS-DISD----EFKI 372 (865)
T ss_pred HhCCcc------ccccchh----HHhhhcccc---cchhHHHHHHHHHhcchhHHHHHHHHHHHHHH-hccc----cceE
Confidence 776543 1111111 112222332 34455566666654443 33333333333332 2322 3344
Q ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccC
Q 002876 669 ITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVH 748 (872)
Q Consensus 669 ~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~ 748 (872)
..+..+..++..++.. -..+++.|.++|.+.. .-+.|..++.++.+++...+..=.+-+..+...+...-
T Consensus 373 vvvdai~sLc~~fp~k----~~~~m~FL~~~Lr~eG-g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce----- 442 (865)
T KOG1078|consen 373 VVVDAIRSLCLKFPRK----HTVMMNFLSNMLREEG-GFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCE----- 442 (865)
T ss_pred EeHHHHHHHHhhccHH----HHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhcc-----
Confidence 5566666666665421 1245666666666643 56788899999999998777665555665555554221
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCccccc--ccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 002876 749 TSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLL--MPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTL 826 (872)
Q Consensus 749 ~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~ 826 (872)
| ..+ + ..++.-++.. ++... ..|+..++..+. |+ +.-+|-.|..++..+. .
T Consensus 443 ----------~-~~i---~----~rILhlLG~E-gP~a~~Pskyir~iyNRvi--LE----n~ivRaaAv~alaKfg--~ 495 (865)
T KOG1078|consen 443 ----------F-TQI---A----VRILHLLGKE-GPKAPNPSKYIRFIYNRVI--LE----NAIVRAAAVSALAKFG--A 495 (865)
T ss_pred ----------c-hHH---H----HHHHHHHhcc-CCCCCCcchhhHHHhhhhh--hh----hhhhHHHHHHHHHHHh--c
Confidence 1 111 1 1222222211 22222 247777777664 22 5679999999988777 2
Q ss_pred cCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002876 827 GSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAIS 867 (872)
Q Consensus 827 g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~ 867 (872)
+ .+.+.+ .|+.++++|..+.|+.+|+.|.++...+.
T Consensus 496 ~---~~~l~~--sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 496 Q---DVVLLP--SILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred C---CCCccc--cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 2 233444 39999999999999999999999988776
No 113
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.00084 Score=72.62 Aligned_cols=200 Identities=13% Similarity=0.141 Sum_probs=144.8
Q ss_pred HHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHc
Q 002876 459 IISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRC 537 (872)
Q Consensus 459 il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~ 537 (872)
-+...+..+.| .+.+|..+...+..+++.-. ..-.-....++...+..+.+.+ +-+.-.++..+..+++.
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~------~~~~~~~ekvl~i~ld~Lkded---syvyLnaI~gv~~Lcev 798 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRK------KATLIQGEKVLAIALDTLKDED---SYVYLNAIRGVVSLCEV 798 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcc------hhhhhhHHHHHHHHHHHhcccC---ceeeHHHHHHHHHHHHh
Confidence 35555556665 68899999999999988531 1222244678888888888764 55666777777788877
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHH
Q 002876 538 STDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVF 617 (872)
Q Consensus 538 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l 617 (872)
.++ .++|.+.+...+.... ... +.+...-+++..++...|+- +..|...+.+.++...
T Consensus 799 y~e-------~il~dL~e~Y~s~k~k--~~~-------d~~lkVGEai~k~~qa~Gel------~~~y~~~Li~tfl~gv 856 (982)
T KOG4653|consen 799 YPE-------DILPDLSEEYLSEKKK--LQT-------DYRLKVGEAILKVAQALGEL------VFKYKAVLINTFLSGV 856 (982)
T ss_pred cch-------hhHHHHHHHHHhcccC--CCc-------cceehHHHHHHHHHHHhccH------HHHHHHHHHHHHHHhc
Confidence 664 4455555543321100 001 11223558888899998876 7889999999999999
Q ss_pred hccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccH
Q 002876 618 AIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYC 689 (872)
Q Consensus 618 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 689 (872)
++++...|..++..+|.++....-....++..++..+....+.+....+|.+|+.++..+.+..|..+.|++
T Consensus 857 repd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpil 928 (982)
T KOG4653|consen 857 REPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPIL 928 (982)
T ss_pred CCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHH
Confidence 988888899999999999988775555677888887777777677789999999999999999998777744
No 114
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0055 Score=66.65 Aligned_cols=232 Identities=15% Similarity=0.155 Sum_probs=158.0
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHh
Q 002876 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (872)
Q Consensus 409 ~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
+.+...+..+ .|+.+.+|..++..+..+++.-.. ........++...+..+.| ++-|--.|...+..+|+.
T Consensus 727 e~~qeai~sl-~d~qvpik~~gL~~l~~l~e~r~~-------~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev 798 (982)
T KOG4653|consen 727 EPLQEAISSL-HDDQVPIKGYGLQMLRHLIEKRKK-------ATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV 798 (982)
T ss_pred HHHHHHHHHh-cCCcccchHHHHHHHHHHHHhcch-------hhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh
Confidence 3466677778 999999999999999999994321 1234556888999999987 677878888888899886
Q ss_pred cccCCCCCCCCchhHHHHHHHHHHhh-ccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcC
Q 002876 488 FEDAISPSSPLTPFFQEIVQALLTVT-HREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKL 566 (872)
Q Consensus 488 ~~~~~~~~~~l~~~l~~i~~~l~~~l-~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 566 (872)
++ ..+++.+...- +..+...+..+-.+-+++..+++..|+-+..|...+....+...
T Consensus 799 y~-------------e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gv--------- 856 (982)
T KOG4653|consen 799 YP-------------EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGV--------- 856 (982)
T ss_pred cc-------------hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhc---------
Confidence 43 34555555522 22111012333445699999999999888888776666665543
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHhhhhhHh
Q 002876 567 SSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR-SATAHEEAMLAIGALAYATGQDFLK 645 (872)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~ 645 (872)
.+++. ..|...+..++.++....-. ...++.+++..++...... +.-+|.+|...+..+..+.|.++.|
T Consensus 857 --repd~--~~RaSS~a~lg~Lcq~~a~~------vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLp 926 (982)
T KOG4653|consen 857 --REPDH--EFRASSLANLGQLCQLLAFQ------VSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLP 926 (982)
T ss_pred --CCchH--HHHHhHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHH
Confidence 23332 45667888888888776544 4456667777777666543 5568999999999999999998888
Q ss_pred hhH----HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Q 002876 646 YMP----EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRA 680 (872)
Q Consensus 646 ~~~----~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 680 (872)
.+. .....+......+++..++..+..++..+-..
T Consensus 927 ilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 927 ILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 553 33444555555555546666666666554433
No 115
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.76 E-value=0.00049 Score=61.25 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-hhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHH---HHHH
Q 002876 606 ADQMMGLFLRVFAIRSATAHEEAMLAIGALAYA-TGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDL---CRAL 681 (872)
Q Consensus 606 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l---~~~~ 681 (872)
.+..++.+++.+.......+--|...+..++.. .++.+.|.++++++.+.++|+.. ++++...++.++..+ ....
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhh
Confidence 456778888888887777777788888888888 66889999999999999999855 569999999999999 6677
Q ss_pred hccccccHHHHHHHHHHHccCC---------CCCCCCchhHHHHHHHHHHHhccc
Q 002876 682 EDKILPYCDGIMTQLLKDLSSN---------QLHRSVKPPIFSCFGDIALAIGEN 727 (872)
Q Consensus 682 ~~~~~~~~~~i~~~l~~~l~~~---------~~~~~v~~~~~~~l~~i~~~~~~~ 727 (872)
|+.+.||..++++.+.-..+.. .....++.-+-.++..+-..-|++
T Consensus 115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 8999999999999886433322 112334444555555555555554
No 116
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.70 E-value=0.006 Score=65.03 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=93.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHH
Q 002876 96 FILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKI 175 (872)
Q Consensus 96 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i 175 (872)
.++.+-. .+.+.+..+|+.|..++++. | .--.+-++.++++..+.+..+|..|+.-|-.+|+.. ..++..+
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~F-P-~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~------~~~v~kv 97 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHF-P-DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN------PEHVSKV 97 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC--G-GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--------T-HHHH
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhC-h-hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH------HHHHhHH
Confidence 3555554 46889999999999999754 5 344567888999999999999999999999998875 3456778
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHhH-
Q 002876 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL---SPEVKIRQAAFECLVAISSTYY- 251 (872)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~---~~~~~~r~~~~~~l~~l~~~~~- 251 (872)
...|.+.|. ..++.....+=++|.+++..-+ ...+..++..+. ..++.+|..+++.+..-+...+
T Consensus 98 aDvL~QlL~--tdd~~E~~~v~~sL~~ll~~d~---------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 98 ADVLVQLLQ--TDDPVELDAVKNSLMSLLKQDP---------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHHHHHH-H---------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred HHHHHHHHh--cccHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence 888888887 4555555666666666554222 123333333332 4567789999888866444333
Q ss_pred HhhH--hhHH-HHHHHHHHHHhcC
Q 002876 252 EKLA--PYIQ-DIFNITAKAVRED 272 (872)
Q Consensus 252 ~~~~--~~~~-~l~~~~~~~~~~~ 272 (872)
+.+. .-++ .++..+...+.|.
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~DV 190 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQDV 190 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT-
T ss_pred HHhhchHHHHHHHHHHHHHHHHhc
Confidence 2233 1122 3444455555553
No 117
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.70 E-value=0.0088 Score=60.26 Aligned_cols=196 Identities=12% Similarity=0.128 Sum_probs=133.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhhcC----CCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhh
Q 002876 96 FILKTLSSPAHDARSTASQVVAKVAGIELP----HKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH 171 (872)
Q Consensus 96 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~ 171 (872)
..+..+.+...+.|..+-..+..+..+.+. ...+..+++.+...++.+....+..|+++++.++-.+++..-....
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 455666667788998888877777755332 1345678889999998876666677888888776665311111455
Q ss_pred HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhh--c----------CCCHHHHHHH
Q 002876 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT--L----------SPEVKIRQAA 239 (872)
Q Consensus 172 ~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~--~----------~~~~~~r~~~ 239 (872)
+..+.|.|.+.+.+...+..+|.+++.+|+-+..+...........-..++.++... + .+++.+..+|
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 777888888888754446788889999988766433322221111113444333321 1 2246789999
Q ss_pred HHHHHHHHHHhHH-hhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 002876 240 FECLVAISSTYYE-KLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEE 291 (872)
Q Consensus 240 ~~~l~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~ 291 (872)
+.+|.-++...+. .+...+...++.+...+.+.+.+||..|-+.+.-+.+..
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999987765 345566777888888889999999999999988887643
No 118
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.70 E-value=0.00025 Score=56.74 Aligned_cols=84 Identities=25% Similarity=0.298 Sum_probs=65.1
Q ss_pred HHHHhhh-cCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCC
Q 002876 370 PFVEENI-TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET 448 (872)
Q Consensus 370 ~~l~~~~-~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 448 (872)
|.+.+.+ ++++|.+|..++.+++.+. -+.+++.+...+ +|+++.||.+++++++++...
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~-------- 61 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELL-KDEDPMVRRAAARALGRIGDP-------- 61 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHH--------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCH--------
Confidence 4555666 7889999999998888321 146688899999 999999999999999987531
Q ss_pred cccCccchHHHHHHHHHhccC--ChhHHHHHHHHHH
Q 002876 449 PIINQGNCQQIISVLLQSMKD--VPNVAEKACGALY 482 (872)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~ 482 (872)
..++.+.+.+.+ +..||..|..+|+
T Consensus 62 ---------~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 ---------EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---------HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 567777777765 4567888888774
No 119
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.68 E-value=0.0034 Score=57.85 Aligned_cols=130 Identities=12% Similarity=0.151 Sum_probs=87.0
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhccc
Q 002876 105 AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMN 184 (872)
Q Consensus 105 ~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~ 184 (872)
++.||..+..+++-++... | +.-...++.+...+.++++.+|..|+.++..+... +.+ ..-..++..+...+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~i--k~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-P-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMI--KVKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-c-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---Cce--eehhhhhHHHHHHHc
Confidence 4689999999999998754 4 34455678899999999999999999999998764 222 222333344445556
Q ss_pred CCCCCHHHHHHHHHHHHHhHhh-chhhccChhhHHHHHHHHHHhhc--------CCCHHHHHHHHHHHHHHHH
Q 002876 185 ASESNNDVRLAATRALYNALGF-AQANFSNDMERDYIMRVVCEATL--------SPEVKIRQAAFECLVAISS 248 (872)
Q Consensus 185 ~~~~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~~il~~l~~~~~--------~~~~~~r~~~~~~l~~l~~ 248 (872)
|++++||..|..+|..+... .+..+ .+.+.+.+..+-. ..+.+-|...++.+...+.
T Consensus 74 --D~~~~Ir~~A~~~~~e~~~~~~~~~i-----~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 74 --DENPEIRSLARSFFSELLKKRNPNII-----YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred --CCCHHHHHHHHHHHHHHHHhccchHH-----HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 99999999999999997653 12111 2334444443322 1344556666666666555
No 120
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.15 Score=56.65 Aligned_cols=166 Identities=13% Similarity=0.098 Sum_probs=111.2
Q ss_pred CCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHH
Q 002876 187 ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITA 266 (872)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~ 266 (872)
+.+...|..|++-+-.-+..-. +...+++-+...+...+.++|+-+...|....+..|+. .-..++.+.
T Consensus 30 s~n~~~kidAmK~iIa~M~~G~-------dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~----~lLavNti~ 98 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSLGE-------DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL----ALLAVNTIQ 98 (757)
T ss_pred ccChHHHHHHHHHHHHHHhcCC-------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH----HHHHHHHHH
Confidence 5677777777776554332111 12445555555555789999998888888877766632 224566777
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHh
Q 002876 267 KAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIA 346 (872)
Q Consensus 267 ~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r 346 (872)
..++++++.+|..|+.+++.+-. ...++.+++.+.+++.+ ..-.+|
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~-------------------------~el~~~~~~~ik~~l~d---------~~ayVR 144 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRV-------------------------KELLGNIIDPIKKLLTD---------PHAYVR 144 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcCh-------------------------HHHHHHHHHHHHHHccC---------CcHHHH
Confidence 78889999999999999887754 33344556666666542 112789
Q ss_pred HHHHHHHHHHHHHcCCcchhc-hHHHHHhhhcCcchhhhHHHHHHHHHhhCC
Q 002876 347 MAGGTCLGLVARTVGDDIVPL-VMPFVEENITKQEWRQREAATYAFGSILEG 397 (872)
Q Consensus 347 ~~a~~~l~~l~~~~~~~~~~~-l~~~l~~~~~~~~~~~r~aal~~l~~l~~~ 397 (872)
+.|+-|+..+-+.-++..... ....+.....|.++.+..+|+.++..+-..
T Consensus 145 k~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 145 KTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 999999888776544333333 445556666788899999999888877654
No 121
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.67 E-value=4.4e-05 Score=54.32 Aligned_cols=54 Identities=28% Similarity=0.333 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHH
Q 002876 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFL 484 (872)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l 484 (872)
|.||.+|++++|.+....+ .....+.+.+++.+...+.| ++.||..|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~-------~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCP-------ELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTH-------HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccH-------HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999999877654 23466899999999999986 689999999999864
No 122
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.67 E-value=0.008 Score=62.00 Aligned_cols=263 Identities=13% Similarity=0.148 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHccc----cCcHHHHHHHHHHHHHHHHHHHh--hhc---CChhHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 002876 526 AAYETLNEVVRCST----DETAPMVMQLVPLIMMELHQTLE--AQK---LSSDEREKQNEIQGLLCGCLQVIIQKLGSSE 596 (872)
Q Consensus 526 ~~~~~l~~l~~~~~----~~~~~~~~~l~~~l~~~l~~~~~--~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 596 (872)
.+++++..+.+..- .+.+++++.-+...++.+...+. .+. .+++++.....++..+|+.+.....+.+..
T Consensus 52 ~~~~~l~lilKiF~sL~~~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~- 130 (370)
T PF08506_consen 52 VLFEMLKLILKIFYSLNCQDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEE- 130 (370)
T ss_dssp HHHHHHHHHHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHH-
T ss_pred HHHHHHHHHHHHHHHHccCcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44444444444332 34555665555555555444433 121 223345556678888999999988877644
Q ss_pred chhhHhhHhHHHHHHHHHHHHhccccc-----hhhHHHHHHHHHHHHhhh--hh--HhhhHHHHHHH-Hhhh--------
Q 002876 597 QTKYVFMQYADQMMGLFLRVFAIRSAT-----AHEEAMLAIGALAYATGQ--DF--LKYMPEFYKYV-EMGL-------- 658 (872)
Q Consensus 597 ~~~~~~~~~~~~i~~~l~~~l~~~~~~-----~~~~a~~~l~~l~~~~~~--~~--~~~~~~i~~~l-~~~l-------- 658 (872)
+.+|++.++..+.++|..-... +-..++..|+.++..... -| .+.++.++..+ +..+
T Consensus 131 -----f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~E 205 (370)
T PF08506_consen 131 -----FEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEE 205 (370)
T ss_dssp -----HHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHH
Confidence 8888888888888888663322 333455555554432211 12 24445443321 2111
Q ss_pred --------------cCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHcc-CCCCCCCCchhHHHHHHHHHHH
Q 002876 659 --------------QNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLS-SNQLHRSVKPPIFSCFGDIALA 723 (872)
Q Consensus 659 --------------~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~~~v~~~~~~~l~~i~~~ 723 (872)
+..+...-|.+|+.++..+++..++.+.+.+...+..+++-.. ++..++.-|..|+..++.++..
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k 285 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASK 285 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBS
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhh
Confidence 1122235677999999999999887766655555555555332 3333566778899999999865
Q ss_pred hcc------------chHHhHH-HHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccc
Q 002876 724 IGE------------NFEKYLM-YAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPY 790 (872)
Q Consensus 724 ~~~------------~~~~~l~-~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 790 (872)
... ++..|+. .++|-|. . +. +...-+|..+++.+..+-+.+. ++.
T Consensus 286 ~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~--~~-----------~~~piLka~aik~~~~Fr~~l~--------~~~ 343 (370)
T PF08506_consen 286 GSTTKSGVTQTNELVDVVDFFSQHVLPELQ-P--DV-----------NSHPILKADAIKFLYTFRNQLP--------KEQ 343 (370)
T ss_dssp S--BTTB-S-B-TTS-HHHHHHHHTCHHHH----SS------------S-HHHHHHHHHHHHHHGGGS---------HHH
T ss_pred hccccCCcccccccccHHHHHHHHhHHHhc-c--cC-----------CCCcchHHHHHHHHHHHHhhCC--------HHH
Confidence 421 2444444 3455554 1 11 1124567778887777665422 246
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 002876 791 APHILQFLDSLYMEKDMDDVVTKTAIGV 818 (872)
Q Consensus 791 ~~~i~~~l~~~l~~~~~~~~v~~~a~~~ 818 (872)
+..+++.+...+.+ .+.-|+.-|..+
T Consensus 344 l~~~~~~l~~~L~~--~~~vv~tyAA~~ 369 (370)
T PF08506_consen 344 LLQIFPLLVNHLQS--SSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHHHHHTTS--S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCcchhhhhhhh
Confidence 77899999999885 456666666554
No 123
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.66 E-value=0.011 Score=65.71 Aligned_cols=369 Identities=15% Similarity=0.143 Sum_probs=191.9
Q ss_pred HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHH
Q 002876 386 AATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQ 465 (872)
Q Consensus 386 aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~ 465 (872)
.++..|..+++... -...-.-..+++.+...| +..+..+...+..++.+++-.... ...-.-..+++.|.+
T Consensus 268 v~~~lLlNLAed~~-ve~kM~~~~iV~~Lv~~L-dr~n~ellil~v~fLkkLSi~~EN-------K~~m~~~giV~kL~k 338 (708)
T PF05804_consen 268 VAFYLLLNLAEDPR-VELKMVNKGIVSLLVKCL-DRENEELLILAVTFLKKLSIFKEN-------KDEMAESGIVEKLLK 338 (708)
T ss_pred HHHHHHHHHhcChH-HHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHH-------HHHHHHcCCHHHHHH
Confidence 55667777777652 111111256788899999 888899999999999988875321 011122357777888
Q ss_pred hccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHH--HHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCc
Q 002876 466 SMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ--EIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDET 542 (872)
Q Consensus 466 ~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~--~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~ 542 (872)
.+.. +..++..+..+|.++... ..+.+.+- .++|.+...+.+++ .+..++..+..+...-..+.
T Consensus 339 Ll~s~~~~l~~~aLrlL~NLSfd--------~~~R~~mV~~GlIPkLv~LL~d~~-----~~~val~iLy~LS~dd~~r~ 405 (708)
T PF05804_consen 339 LLPSENEDLVNVALRLLFNLSFD--------PELRSQMVSLGLIPKLVELLKDPN-----FREVALKILYNLSMDDEARS 405 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHhCcC--------HHHHHHHHHCCCcHHHHHHhCCCc-----hHHHHHHHHHHhccCHhhHH
Confidence 8774 678888899999988643 22233332 25667777776543 33345555544443222111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhh--HhHHHHHHHHHHHHhcc
Q 002876 543 APMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFM--QYADQMMGLFLRVFAIR 620 (872)
Q Consensus 543 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~--~~~~~i~~~l~~~l~~~ 620 (872)
.--....+|.+++.+.... +.+ +...++..+. .+.......+.+. ..++.++... ++..
T Consensus 406 ~f~~TdcIp~L~~~Ll~~~-------~~~-----v~~eliaL~i----NLa~~~rnaqlm~~g~gL~~L~~ra---~~~~ 466 (708)
T PF05804_consen 406 MFAYTDCIPQLMQMLLENS-------EEE-----VQLELIALLI----NLALNKRNAQLMCEGNGLQSLMKRA---LKTR 466 (708)
T ss_pred HHhhcchHHHHHHHHHhCC-------Ccc-----ccHHHHHHHH----HHhcCHHHHHHHHhcCcHHHHHHHH---Hhcc
Confidence 1111235666666654421 111 0000111111 1111110001111 1122222222 1211
Q ss_pred ccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHH--hccccccHH--HHHHHH
Q 002876 621 SATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRAL--EDKILPYCD--GIMTQL 696 (872)
Q Consensus 621 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~--~i~~~l 696 (872)
+ .-.+..+-+++.+-|+. ...+..++..+...+.+.++.+. .+.++|.++.-. +.+...++. ++++.+
T Consensus 467 D----~lLlKlIRNiS~h~~~~-k~~f~~~i~~L~~~v~~~~~ee~---~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L 538 (708)
T PF05804_consen 467 D----PLLLKLIRNISQHDGPL-KELFVDFIGDLAKIVSSGDSEEF---VVECLGILANLTIPDLDWAQLLQEYNLLPWL 538 (708)
T ss_pred c----HHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHhhcCCcHHH---HHHHHHHHHhcccCCcCHHHHHHhCCHHHHH
Confidence 1 12344666666665432 22222333334444554444444 444555544322 122333343 477778
Q ss_pred HHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHH--HHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 002876 697 LKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLM--YAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGI 774 (872)
Q Consensus 697 ~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~--~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l 774 (872)
.+.+.......++.-.++..+|.++. .+...+.+- .+++.+.+.++.+. +| .|++ -+++-+|..+
T Consensus 539 ~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kq----eD---dE~V----lQil~~f~~l 605 (708)
T PF05804_consen 539 KDLLKPGASEDDLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQ----ED---DEIV----LQILYVFYQL 605 (708)
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhC----ch---HHHH----HHHHHHHHHH
Confidence 88886554445566667788887764 334445543 67888888887763 12 2332 2355566666
Q ss_pred hhcccCCCcccccccch---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 002876 775 FQGFKGSPKTQLLMPYA---PHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADT 825 (872)
Q Consensus 775 ~~~~~~~~~~~~~~~~~---~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~ 825 (872)
+.. ++ -+.++ .++...+...+.| .|.++|+.+=.++.-|+..
T Consensus 606 l~h------~~-tr~~ll~~~~~~~ylidL~~d--~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 606 LFH------EE-TREVLLKETEIPAYLIDLMHD--KNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HcC------hH-HHHHHHhccchHHHHHHHhcC--CCHHHHHHHHHHHHHHHHh
Confidence 653 11 11222 2466677777775 6899999988888777764
No 124
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.65 E-value=0.035 Score=68.33 Aligned_cols=305 Identities=9% Similarity=0.010 Sum_probs=165.1
Q ss_pred hhhhHHHHHHHHHHHHHccccC--c--HHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 002876 520 ESRLRTAAYETLNEVVRCSTDE--T--APMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSS 595 (872)
Q Consensus 520 ~~~v~~~~~~~l~~l~~~~~~~--~--~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 595 (872)
+..++..++++|..+...+-+. . ..+-..++.++...+... .+. .++..+++|+..++...+..
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s--------~~~----eVrE~ILeCv~qmI~s~~~n 1217 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKS--------NAV----EIRELIIRCVSQMVLSRVNN 1217 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhc--------Cch----HHHHHHHHHHHHHHHHHHhh
Confidence 3456667777776665544321 1 112234555555555432 111 34556788888887765543
Q ss_pred cchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhH----hhhHHHHHHHHhhhcCCChhhHHHHHH
Q 002876 596 EQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFL----KYMPEFYKYVEMGLQNFEDYQVCAITV 671 (872)
Q Consensus 596 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~~v~~~a~ 671 (872)
+..-=..++..+.....+++..+-+.++..+..+....-..+. ..+..++..+....++..+.++.-.|+
T Consensus 1218 ------IkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI 1291 (1780)
T PLN03076 1218 ------VKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAI 1291 (1780)
T ss_pred ------hhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHH
Confidence 4433344555555555555666777788888777643211111 233344444444444333345555666
Q ss_pred HHHHHHHHHHhcc------------------------------cc------ccHHHHHHHHHHHccCCCCCCCCchhHHH
Q 002876 672 GVVGDLCRALEDK------------------------------IL------PYCDGIMTQLLKDLSSNQLHRSVKPPIFS 715 (872)
Q Consensus 672 ~~l~~l~~~~~~~------------------------------~~------~~~~~i~~~l~~~l~~~~~~~~v~~~~~~ 715 (872)
..+..++..+-+. +. .+.-.++..|..+..++ ..+||..|+.
T Consensus 1292 ~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~--RlEVR~~ALq 1369 (1780)
T PLN03076 1292 AFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP--RPEIRKSALQ 1369 (1780)
T ss_pred HHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC--cHHHHHHHHH
Confidence 6555443333100 00 11223444455555554 6789999999
Q ss_pred HHHHHHHHhccchHH-hH----HHHHHHHHHHHhhccCC-------------CCCCccHHHHHHHHHHHHHHHHHHHhhc
Q 002876 716 CFGDIALAIGENFEK-YL----MYAMPMLQSAAELSVHT-------------SGVDDDMTEYTNSLRNGILEAFSGIFQG 777 (872)
Q Consensus 716 ~l~~i~~~~~~~~~~-~l----~~il~~l~~~l~~~~~~-------------~~~d~~~~~~~~~~~~~~~~~~~~l~~~ 777 (872)
++-++...+|..|.+ ++ ..++.+++..++...+. +.+..+...|. .++...++.+++.-
T Consensus 1370 tLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl---~eT~~~AL~~lvdL 1446 (1780)
T PLN03076 1370 VLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL---YETCTLALQLVVDL 1446 (1780)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH---HHHHHHHHHHHHHH
Confidence 999999999998875 43 33444444444432111 00111223343 33344444444433
Q ss_pred ccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCCh
Q 002876 778 FKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDH 853 (872)
Q Consensus 778 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~ 853 (872)
+.. .-+.+.+.++.++..+...+.. .++.+-+....|+..++...|..|.+--=. -+...+..+...+.+
T Consensus 1447 ft~--fFd~L~~~L~~~l~ll~~ci~q--~n~~la~ig~~~l~~li~~ng~~F~~~~W~--~i~~~~~~lf~~T~p 1516 (1780)
T PLN03076 1447 FVK--FYPTVNPLLKKVLMLLVSFIKR--PHQSLAGIGIAAFVRLMSNAGHLFSDEKWL--EVVLSLKEAANATLP 1516 (1780)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHcC--chHHHHHHHHHHHHHHHHHhhccCCHHHHH--HHHHHHHHHHHHhCC
Confidence 221 1233556677777777766663 689999999999999999999887754322 155555555544444
No 125
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.022 Score=54.67 Aligned_cols=250 Identities=13% Similarity=0.163 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHc-CCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH----HHHHHHHHHHhccCCc
Q 002876 349 GGTCLGLVARTV-GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV----NIALNFMLTALMQDPN 423 (872)
Q Consensus 349 a~~~l~~l~~~~-~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~----~~i~~~l~~~l~~d~~ 423 (872)
...||.++.+.. |..+.|.+.|-+...+..++-.++.-++.-++.+.+.+......+.+ ..+++.++.++ ..++
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI-gged 141 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI-GGED 141 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH-cCCc
Confidence 457888887754 88889999999999998888889999999999999998644444443 46888999999 8999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHH-hccC-----------ChhHHHHHHHHHHHHHHhcccC
Q 002876 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQ-SMKD-----------VPNVAEKACGALYFLAQGFEDA 491 (872)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~-~l~d-----------~~~v~~~a~~al~~l~~~~~~~ 491 (872)
..|-.+|...+.+++..- ..+..++. .+.| +.-+|.+....+..+....
T Consensus 142 deVAkAAiesikrialfp----------------aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiS--- 202 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALFP----------------AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSIS--- 202 (524)
T ss_pred HHHHHHHHHHHHHHHhcH----------------HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcC---
Confidence 999999999999888742 11222221 1111 2233444444444443221
Q ss_pred CCCCCCCchhH--HHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHcccc-CcHHHHHHHHHHHHHHHHHHHhhhcCCh
Q 002876 492 ISPSSPLTPFF--QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD-ETAPMVMQLVPLIMMELHQTLEAQKLSS 568 (872)
Q Consensus 492 ~~~~~~l~~~l--~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 568 (872)
+. ...+. ..++..+..-+...+ +.-++..+++....++..... .+.+ -..+++.+++.+.. .+
T Consensus 203 ---pe-saneckkSGLldlLeaElkGte--DtLVianciElvteLaeteHgrefla-QeglIdlicnIIsG-------ad 268 (524)
T KOG4413|consen 203 ---PE-SANECKKSGLLDLLEAELKGTE--DTLVIANCIELVTELAETEHGREFLA-QEGLIDLICNIISG-------AD 268 (524)
T ss_pred ---HH-HHhHhhhhhHHHHHHHHhcCCc--ceeehhhHHHHHHHHHHHhhhhhhcc-hhhHHHHHHHHhhC-------CC
Confidence 11 11111 234444444444333 556777777777777765432 2211 12344444443322 13
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCc---chhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh
Q 002876 569 DEREKQNEIQGLLCGCLQVIIQKLGSSE---QTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYAT 639 (872)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 639 (872)
.+|-. .+| .+-.+...+|+.. .+.+.+-.-+...++..++.....+++..+.|+.++|.+....
T Consensus 269 sdPfe--kfr-----almgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 269 SDPFE--KFR-----ALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred CCcHH--HHH-----HHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence 33321 222 1222223333221 0111122233445566667777788888999999999876544
No 126
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.15 Score=54.72 Aligned_cols=348 Identities=14% Similarity=0.138 Sum_probs=192.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 002876 228 TLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSD 307 (872)
Q Consensus 228 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (872)
++++.-.-+....-.+..+++... ..+..+++.+.+.+.+.++.....|+.+++.+++.+
T Consensus 83 Lss~kysEKqIGYl~is~L~n~n~----dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re---------------- 142 (938)
T KOG1077|consen 83 LSSNKYSEKQIGYLFISLLLNENS----DLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSRE---------------- 142 (938)
T ss_pred hhcCCccHHHHhHHHHHHHHhcch----HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHh----------------
Confidence 333333334444445555555442 234455666666677788888899999988887643
Q ss_pred CchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchh-chHHHHHhhhcCcchhhhHH
Q 002876 308 IPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVP-LVMPFVEENITKQEWRQREA 386 (872)
Q Consensus 308 ~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~~l~~~~~~~~~~~r~a 386 (872)
+.+.+...+-.+|.. . + ..--+|+.|+-|+-++.+..++-+-+ ....-+...++|.+..+--+
T Consensus 143 -----~~ea~~~DI~KlLvS---~--~------~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta 206 (938)
T KOG1077|consen 143 -----MAEAFADDIPKLLVS---G--S------SMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTA 206 (938)
T ss_pred -----HHHHhhhhhHHHHhC---C--c------chHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeee
Confidence 233333333333332 1 1 11267888888888888877765544 34455667777777777778
Q ss_pred HHHHHHHhhCCCCCCcchHHHHHHHHHHHHHh---c---------cCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCcc
Q 002876 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTAL---M---------QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (872)
Q Consensus 387 al~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l---~---------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (872)
+...+..++.... +....-++..+..+.... . .-|.|-.....+++|..+ +.+.. + -...
T Consensus 207 ~~sLi~~lvk~~p-~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~----p~~~D--~-~~r~ 278 (938)
T KOG1077|consen 207 ATSLIEALVKKNP-ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY----PTPED--P-STRA 278 (938)
T ss_pred hHHHHHHHHHcCC-HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC----CCCCC--c-hHHH
Confidence 8877777776652 332222222222222211 0 114566666666666544 21100 0 1123
Q ss_pred chHHHHHHHHHhccC---ChhHH-----HHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHH
Q 002876 455 NCQQIISVLLQSMKD---VPNVA-----EKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTA 526 (872)
Q Consensus 455 ~~~~il~~l~~~l~d---~~~v~-----~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~ 526 (872)
.+..+++.++...++ +.+|+ .+...-..+++..++.. + ..+..-+..|.+.+.+. +.++|--
T Consensus 279 ~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e---~----~ll~~~~~~Lg~fls~r---E~NiRYL 348 (938)
T KOG1077|consen 279 RLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSE---P----ELLSRAVNQLGQFLSHR---ETNIRYL 348 (938)
T ss_pred HHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCc---H----HHHHHHHHHHHHHhhcc---cccchhh
Confidence 344556666665552 22232 22222223344333321 2 23445555666666554 5678888
Q ss_pred HHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhH
Q 002876 527 AYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYA 606 (872)
Q Consensus 527 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 606 (872)
+++.+..++.... ....+..-...++..+.. +++. .+|..+.+.|-.++.. ..+
T Consensus 349 aLEsm~~L~ss~~--s~davK~h~d~Ii~sLkt----------erDv--SirrravDLLY~mcD~------------~Na 402 (938)
T KOG1077|consen 349 ALESMCKLASSEF--SIDAVKKHQDTIINSLKT----------ERDV--SIRRRAVDLLYAMCDV------------SNA 402 (938)
T ss_pred hHHHHHHHHhccc--hHHHHHHHHHHHHHHhcc----------ccch--HHHHHHHHHHHHHhch------------hhH
Confidence 8888888776632 122222233444444432 2222 4555666666555432 246
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHH
Q 002876 607 DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVE 655 (872)
Q Consensus 607 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~ 655 (872)
..|+..+++.|.+.+..+|++...-++-++..+..+..=|.+.+++.+.
T Consensus 403 k~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLir 451 (938)
T KOG1077|consen 403 KQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIR 451 (938)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 7899999999999988999998887888887776666666666665544
No 127
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.60 E-value=0.058 Score=57.81 Aligned_cols=190 Identities=11% Similarity=0.158 Sum_probs=110.5
Q ss_pred CCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCc
Q 002876 50 EKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQW 129 (872)
Q Consensus 50 ~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~ 129 (872)
..+...+++|++++.++++. | ++..+...+.+++++.|++..||..+...|..+++.. + ...
T Consensus 33 kg~~k~K~Laaq~I~kffk~------------F----P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~-~~v 94 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKH------------F----PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-P-EHV 94 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-----------------GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-H
T ss_pred cCCHHHHHHHHHHHHHHHhh------------C----hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-H-HHH
Confidence 34789999999999888763 3 3344455678999999999999999999999999865 3 345
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchh
Q 002876 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA 209 (872)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (872)
+.+.+.|.++++++++..+..+=.+|..+.+.- | ...+..++..+... . ..+..+|..+++.+..-+..++.
T Consensus 95 ~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-~----k~tL~~lf~~i~~~-~--~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 95 SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQD-P----KGTLTGLFSQIESS-K--SGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHH------HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-c----HHHHHHHHHHHHhc-c--cCchHHHHHHHHHHHHHHhhCcH
Confidence 789999999999888776666666666665543 2 22344444444321 1 34678999999998775544444
Q ss_pred hccC--hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHh----hHhhHHHHHHHHHHHH
Q 002876 210 NFSN--DMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK----LAPYIQDIFNITAKAV 269 (872)
Q Consensus 210 ~~~~--~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~~~~l~~~~~~~~ 269 (872)
.... .+....+...+...+.|-.. .=+..+..+++...-+ -.+....+++++....
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~DVTa----eEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa 228 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQDVTA----EEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQA 228 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT--H----HHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHH
T ss_pred HHhhchHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHh
Confidence 3333 22234566666677754322 2233333444432221 1233456777766544
No 128
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.60 E-value=0.15 Score=54.41 Aligned_cols=145 Identities=12% Similarity=0.076 Sum_probs=92.9
Q ss_pred cchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccch-H
Q 002876 379 QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC-Q 457 (872)
Q Consensus 379 ~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~ 457 (872)
.+-..+.||+.++..+......-.-...-..+...+++.+ .||...|..++.-++.++.-.+.. ....++ .
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~-------~kskfl~~ 460 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSN-------LKSKFLRN 460 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhccc-------HHHHHHHc
Confidence 3456778888887776543210000011145667788888 999999999998888888776642 122222 3
Q ss_pred HHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHH
Q 002876 458 QIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVR 536 (872)
Q Consensus 458 ~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~ 536 (872)
..+..+.+.+.+ .+.+|..+.|+|..+.-+++. .....++-.--.+.+.....++ ++.|+++++..+..+..
T Consensus 461 ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de----~~k~~~~~ki~a~~i~~l~nd~---d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 461 NGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE----EEKFQLLAKIPANLILDLINDP---DWAVQEQCFQLLRNLTC 533 (678)
T ss_pred CcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH----HHHHHHHHHhhHHHHHHHHhCC---CHHHHHHHHHHHHHhhc
Confidence 456777777776 678999999999999876532 2222223333344445555555 67899999988888776
Q ss_pred cc
Q 002876 537 CS 538 (872)
Q Consensus 537 ~~ 538 (872)
..
T Consensus 534 ~~ 535 (678)
T KOG1293|consen 534 NS 535 (678)
T ss_pred Cc
Confidence 54
No 129
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.59 E-value=0.013 Score=58.95 Aligned_cols=210 Identities=12% Similarity=0.034 Sum_probs=136.9
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHHH--hhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHh--cccc
Q 002876 611 GLFLRVFAIRSATAHEEAMLAIGALAYA--TGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALE--DKIL 686 (872)
Q Consensus 611 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~--~~~~ 686 (872)
...+..+.+.+...|+.++..+..+... ....+......++..+.+.++.... +.+..|+.+++-++-.+| ....
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHH
Confidence 3344455556677888888887776643 2344556677899999998876544 567788888988888866 5555
Q ss_pred ccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHH--HHHHHHHHHHhhccCCCCCCccHHHHHHHHH
Q 002876 687 PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLM--YAMPMLQSAAELSVHTSGVDDDMTEYTNSLR 764 (872)
Q Consensus 687 ~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~--~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~ 764 (872)
.....+.+.|.+.+.+......+|..++.|+|-++...+.+...+.. ..|..+......+.+... ..........+.
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~-~~~~~~~~~~l~ 203 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNA-PVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCc-ccccCCCccHHH
Confidence 66778888898988887544566778888999988877766554432 344433322211110000 000000123567
Q ss_pred HHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcC
Q 002876 765 NGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGS 828 (872)
Q Consensus 765 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~ 828 (872)
.+++.+.+-++..+. ...+..+....++.+...|.. .+.+||.+|-.+|.-|.....+
T Consensus 204 ~aAL~aW~lLlt~~~----~~~~~~~~~~~~~~l~~lL~s--~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 204 AAALSAWALLLTTLP----DSKLEDLLEEALPALSELLDS--DDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhhc
Confidence 778888776765532 233556677788888888884 6889999999888877766553
No 130
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.58 E-value=0.0067 Score=55.89 Aligned_cols=110 Identities=11% Similarity=0.101 Sum_probs=82.9
Q ss_pred ChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCc-h
Q 002876 52 PVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQW-P 130 (872)
Q Consensus 52 ~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~-~ 130 (872)
++.+|..+.+.+.-...++ +...+...+.+...|.|+++.||..+..+++++...++- .| .
T Consensus 1 ~~~vR~n~i~~l~DL~~r~----------------~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i--k~k~ 62 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY----------------PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI--KVKG 62 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC----------------cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce--eehh
Confidence 4678888888887765432 334455667899999999999999999999999987643 44 4
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHH
Q 002876 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVV 180 (872)
Q Consensus 131 ~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~ 180 (872)
.++..+..++.++++.+|..|-.++..+.....|..+ ...+..++..+.
T Consensus 63 ~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i-~~~~~e~i~~l~ 111 (178)
T PF12717_consen 63 QLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNII-YNNFPELISSLN 111 (178)
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHh
Confidence 5558888999999999999999999998887435544 344444444443
No 131
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.041 Score=56.33 Aligned_cols=261 Identities=18% Similarity=0.162 Sum_probs=143.8
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhh
Q 002876 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN 210 (872)
Q Consensus 131 ~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (872)
.++..+.+...+++...|..|+.+|+...+.. |+.. ..+...++..++.++-+ +.+.+|...+++++..+.....+
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~-P~kv-~th~~~~ldaii~gL~D-~~~~~V~leam~~Lt~v~~~~~~- 333 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGA-PDKV-RTHKTTQLDAIIRGLYD-DLNEEVQLEAMKCLTMVLEKASN- 333 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccC-cHHH-HHhHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHhhhh-
Confidence 45555566667788899999999999998887 7766 67888899999888875 55689999999999887653321
Q ss_pred ccChhhHHHHHHHH---HHhhcCCCHHHHHHHHHHHHHHHHHhHH----hhHhhHH-HHHHHHHHHHhcCChhhHHHHHH
Q 002876 211 FSNDMERDYIMRVV---CEATLSPEVKIRQAAFECLVAISSTYYE----KLAPYIQ-DIFNITAKAVREDEEPVALQAIE 282 (872)
Q Consensus 211 ~~~~~~~~~il~~l---~~~~~~~~~~~r~~~~~~l~~l~~~~~~----~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~ 282 (872)
+. -.+.++++. ..+..+.+++.|.+++..++.+....+. +|...+. .+.+ ++-.++++++.+.. |+.
T Consensus 334 ~~---l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~-lllhl~d~~p~va~-ACr 408 (533)
T KOG2032|consen 334 DD---LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAP-LLLHLQDPNPYVAR-ACR 408 (533)
T ss_pred cc---hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccc-ceeeeCCCChHHHH-HHH
Confidence 11 123344433 3344577899999999999988875442 2222111 1112 22345677765543 333
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCC
Q 002876 283 FWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD 362 (872)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~ 362 (872)
.....+- +++..+.+..+++-..+. ...| ........+... .
T Consensus 409 ~~~~~c~---------------------p~l~rke~~~~~q~~ld~--------------~~~~--~q~Fyn~~c~~L-~ 450 (533)
T KOG2032|consen 409 SELRTCY---------------------PNLVRKELYHLFQESLDT--------------DMAR--FQAFYNQWCIQL-N 450 (533)
T ss_pred HHHHhcC---------------------chhHHHHHHHHHhhhhHH--------------hHHH--HHHHHHHHHHHH-h
Confidence 3222221 011221111112211110 0001 011111111111 1
Q ss_pred cchhchHHHHHh---hhcCcch-hhhHHHHHHHHHhhCCCCCCcchH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHh
Q 002876 363 DIVPLVMPFVEE---NITKQEW-RQREAATYAFGSILEGPSPEKLVP-LVNIALNFMLTALMQDPNNHVKDTTAWTLGRM 437 (872)
Q Consensus 363 ~~~~~l~~~l~~---~~~~~~~-~~r~aal~~l~~l~~~~~~~~~~~-~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l 437 (872)
.+.|.+..++.. .+-+..| .+|.++...-+.......+..... ....+...+.... .|+-|.++.++..+++.+
T Consensus 451 ~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~-~dp~pev~~~a~~al~~l 529 (533)
T KOG2032|consen 451 HIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLW-RDPRPEVTDSARKALDLL 529 (533)
T ss_pred hhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHc-cCCCchhHHHHHHHhhhH
Confidence 122333333221 2223557 778877766555554432111111 1234555566666 899999999999999877
Q ss_pred hh
Q 002876 438 FE 439 (872)
Q Consensus 438 ~~ 439 (872)
..
T Consensus 530 ~~ 531 (533)
T KOG2032|consen 530 SV 531 (533)
T ss_pred hh
Confidence 64
No 132
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.56 E-value=0.13 Score=56.26 Aligned_cols=384 Identities=14% Similarity=0.146 Sum_probs=196.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhc-----ChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhh
Q 002876 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQ-----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELV 79 (872)
Q Consensus 5 l~~~l~~~~s~~~~~r~~a~~~L~~~~~~-----~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~ 79 (872)
+..+|..+.|++..||++.-+.|+.+.+. +..--+..|+....+++.+..+|.++.+.++..+.
T Consensus 25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~----------- 93 (501)
T PF13001_consen 25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD----------- 93 (501)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh-----------
Confidence 45677888899999999999999987654 11223455666677766679999999999987665
Q ss_pred hhccCCChHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHHhhc----CCCCchhHHHHHHHhhcCCChhHHHHHH
Q 002876 80 QRWLSLDSSVKAQIKSFILKTLSSPA---HDARSTASQVVAKVAGIEL----PHKQWPELIGALLSNIHQLPPHTKQATL 152 (872)
Q Consensus 80 ~~~~~l~~~~~~~i~~~ll~~l~~~~---~~vr~~~a~~l~~i~~~~~----~~~~~~~l~~~l~~~l~~~~~~~r~~al 152 (872)
.++.+.+..+.+.+++.+..-. ......++..+..+.+... | ..|........+...-.+.......+
T Consensus 94 ----Rl~~~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l~ 168 (501)
T PF13001_consen 94 ----RLDDEERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEP-PRGSKEDEKFRDSLGLSDFCDDVFLA 168 (501)
T ss_pred ----cCCHHHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccc-cccchhhhcHHHHHhhcchHHHHHcc
Confidence 4789999999999999998432 2333334444433333220 1 12222111111100000000000000
Q ss_pred HHHHHhh----------hhc---cccccch----------------hhH----HHHHHHHHhccc------------CCC
Q 002876 153 ETLGYIC----------EEV---SSDAVEQ----------------DHV----NKILTAVVQGMN------------ASE 187 (872)
Q Consensus 153 ~~l~~i~----------~~~---~~~~l~~----------------~~~----~~i~~~l~~~l~------------~~~ 187 (872)
.....+. ... .+..+.. ..+ -.++..+....- +.|
T Consensus 169 ~~~~~~~~l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsad 248 (501)
T PF13001_consen 169 PWFSKFLLLQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLLIASAD 248 (501)
T ss_pred hhhccccccccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEeC
Confidence 0000000 000 0000000 011 111111111111 125
Q ss_pred CCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhc-----------CCCHHHHHHHHHHHHHHHHHhHHhhHh
Q 002876 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL-----------SPEVKIRQAAFECLVAISSTYYEKLAP 256 (872)
Q Consensus 188 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-----------~~~~~~r~~~~~~l~~l~~~~~~~~~~ 256 (872)
++.+|...|-..+..+.. .+++ ..+++.++.+.. --++.+|...+..|+.-... ..
T Consensus 249 ~~~~V~~~ae~~LKr~~~----~~ed----~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-----a~ 315 (501)
T PF13001_consen 249 SNSSVSDRAEDLLKRLSV----SLED----PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-----AT 315 (501)
T ss_pred CcchHHHHHHHHHhhcCC----CCCC----HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-----Hh
Confidence 566666666666665322 1332 234444443332 23566777777776653221 12
Q ss_pred hHHHHHHHHHHHHhcC--ChhhHHHHHHHH---HHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhc
Q 002876 257 YIQDIFNITAKAVRED--EEPVALQAIEFW---SSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLK 331 (872)
Q Consensus 257 ~~~~l~~~~~~~~~~~--~~~v~~~a~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~ 331 (872)
..+.++..+...+.+. +...+..+++|+ ....... -...+..+-|.+...+-.
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~----------------------~~~~l~~l~~~i~~~g~p 373 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHI----------------------SPQILKLLRPVILSQGWP 373 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhc----------------------CHHHHHHHHHHHHhcCcc
Confidence 3456677777777666 567788888888 4444321 122223333333332221
Q ss_pred ccC---CcccCCccchHhHHHHHHHHHHHHHcCCcchh--chHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcc--h
Q 002876 332 QEE---DQDQDEGAWNIAMAGGTCLGLVARTVGDDIVP--LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL--V 404 (872)
Q Consensus 332 ~~~---d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~--~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~--~ 404 (872)
.-+ ......+.-..|..+.++++.++...+.-+.. .++.++-+.+.++...+|-+.--|++.++........ .
T Consensus 374 ~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~ 453 (501)
T PF13001_consen 374 LIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDED 453 (501)
T ss_pred ccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchh
Confidence 111 11111233578999999999999987654422 2444454555666677787777777777765531111 0
Q ss_pred HHHHHHHHHHH-HHhccCCcHHHHHHHHHHHHHhhhh
Q 002876 405 PLVNIALNFML-TALMQDPNNHVKDTTAWTLGRMFEF 440 (872)
Q Consensus 405 ~~~~~i~~~l~-~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (872)
......+..+. ... .+....+|..|.+...++...
T Consensus 454 ~~~~~~~~~l~~~~~-~~~~~~~R~~avk~an~~fpf 489 (501)
T PF13001_consen 454 EQKRLLLELLLLSYI-QSEVRSCRYAAVKYANACFPF 489 (501)
T ss_pred HHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhCCc
Confidence 11222222232 333 556677888887777666553
No 133
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.54 E-value=0.004 Score=56.24 Aligned_cols=136 Identities=10% Similarity=0.068 Sum_probs=113.3
Q ss_pred HhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh-hhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHh
Q 002876 604 QYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG-QDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALE 682 (872)
Q Consensus 604 ~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 682 (872)
...+..+..+...+++++..-|-.++..++.++...+ +-|..+...++..+.+.++..+...++..++.++..+.....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3566788888999999888888899999999998885 456588888999999999988888899999999999988764
Q ss_pred -------ccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHH
Q 002876 683 -------DKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAA 743 (872)
Q Consensus 683 -------~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l 743 (872)
+...|.++.+++.+++.+++ ......++.++..+...++..|.||-.++-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 33578999999999998875 3456889999999999999999999888766666543
No 134
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.28 Score=56.13 Aligned_cols=183 Identities=15% Similarity=0.167 Sum_probs=128.6
Q ss_pred hhHHHHHHHHhhhcCC---ChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHH
Q 002876 646 YMPEFYKYVEMGLQNF---EDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIAL 722 (872)
Q Consensus 646 ~~~~i~~~l~~~l~~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~ 722 (872)
.+..+.|.+...++++ .+++++.+|.-+++.++--- ..|...-++.++..+...+ ++-+|.++.-++|+++.
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS----a~fces~l~llftimeksp-~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS----AEFCESHLPLLFTIMEKSP-SPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhcCC-Cceeeecchheccchhh
Confidence 4667888888887653 35788888888888776422 2456777889999998555 78899999999999999
Q ss_pred HhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHh
Q 002876 723 AIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLY 802 (872)
Q Consensus 723 ~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l 802 (872)
..+.-+.|+-+ .++..+.+. ...+|++++-.+..++-. +.-.++.|+.. +...+
T Consensus 991 ~fpnlie~~T~----~Ly~rL~D~-------------~~~vRkta~lvlshLILn-----dmiKVKGql~e----MA~cl 1044 (1251)
T KOG0414|consen 991 RFPNLIEPWTE----HLYRRLRDE-------------SPSVRKTALLVLSHLILN-----DMIKVKGQLSE----MALCL 1044 (1251)
T ss_pred hcccccchhhH----HHHHHhcCc-------------cHHHHHHHHHHHHHHHHh-----hhhHhcccHHH----HHHHh
Confidence 88876666554 444444332 258999999999998764 22234455543 33344
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcC--CChhHHHHHHHHHHHHHH
Q 002876 803 MEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSS--DDHMIKESAEWAKLAISK 868 (872)
Q Consensus 803 ~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~--~~~~~~~~~~~~~~~~~~ 868 (872)
.| .+++++..|=.+|.++.... +..-+ ..|.+|.++.+. ..+..+.+..+..+.|.+
T Consensus 1045 ~D--~~~~IsdlAk~FF~Els~k~-n~iyn------lLPdil~~Ls~~~l~~~~~~~vm~~li~~ikk 1103 (1251)
T KOG0414|consen 1045 ED--PNAEISDLAKSFFKELSSKG-NTIYN------LLPDILSRLSNGNLEEESYKTVMEFLIGLIKK 1103 (1251)
T ss_pred cC--CcHHHHHHHHHHHHHhhhcc-cchhh------hchHHHHhhccCcccchhhHHHHHHHHHHhcc
Confidence 54 68999999999999999864 44433 355566665533 346788888888877764
No 135
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.52 E-value=0.58 Score=59.35 Aligned_cols=192 Identities=17% Similarity=0.221 Sum_probs=129.3
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhcccccc
Q 002876 609 MMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPY 688 (872)
Q Consensus 609 i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 688 (872)
.+..++..+.+..-..++.+...+|+++...+..+.|++..........+.-.--..+...+...+..++.....-+.+|
T Consensus 566 ~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~ 645 (2341)
T KOG0891|consen 566 LLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPY 645 (2341)
T ss_pred hHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhh
Confidence 44446666676666678888888888877666667777777666655544422211222233334444555555557788
Q ss_pred HHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHH
Q 002876 689 CDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGIL 768 (872)
Q Consensus 689 ~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~ 768 (872)
..+++..++.-+.++ +..+-.++..+++.++...|..+..+.+..++.+.+.+++.. ...-|.+++
T Consensus 646 v~~~l~~~~~~~~~~--~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s------------~~~rr~asl 711 (2341)
T KOG0891|consen 646 VGPILLVLLPKLQDP--SSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQS------------SLGKRLAAL 711 (2341)
T ss_pred cCchHHHHHHHHhcc--chhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhh------------hhhchhHHH
Confidence 888888888888887 456777899999999999998888888888888888887541 234456677
Q ss_pred HHHHHHhhcccCCCcccccccch--HHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002876 769 EAFSGIFQGFKGSPKTQLLMPYA--PHILQFLDSLYMEKDMDDVVTKTAIGVLG 820 (872)
Q Consensus 769 ~~~~~l~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~~~a~~~l~ 820 (872)
.++..+...-+ -.+.||. +.++..+...+.. .....+|..++..+|
T Consensus 712 k~l~~l~s~~~-----~~v~p~~~~P~ll~~l~~~~~t-e~~~~ir~~~v~~~g 759 (2341)
T KOG0891|consen 712 KALGQLESSTG-----YVVDPYLDYPELLDILINILKT-EQSSTIRREAIRLLG 759 (2341)
T ss_pred HHhhhhhcccc-----eEecccccChHHHHHHHHHHhH-hhhhHHHHHHHHHhh
Confidence 77777766522 1345554 4566766655554 356778888888888
No 136
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.48 E-value=0.0021 Score=72.03 Aligned_cols=197 Identities=10% Similarity=0.089 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh-hhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhcc
Q 002876 606 ADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG-QDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDK 684 (872)
Q Consensus 606 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~ 684 (872)
.+.+-+.+..-+.++++.-|.+++..+...+..-+ .....|...+...+ +....+.+..+...+..++..++..++..
T Consensus 251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~-ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILL-KIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHH-HHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 33455556666677888888888888877776555 22233444444444 44433456688889999999999999999
Q ss_pred ccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHH
Q 002876 685 ILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLR 764 (872)
Q Consensus 685 ~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~ 764 (872)
+.+|...+.+.++..+.+. ...++..+..++-.++... .+..+.+.+..++.+.. ...|
T Consensus 330 ~~~~~~~v~p~lld~lkek--k~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~kn-------------p~~k 388 (815)
T KOG1820|consen 330 FRKYAKNVFPSLLDRLKEK--KSELRDALLKALDAILNST------PLSKMSEAILEALKGKN-------------PQIK 388 (815)
T ss_pred hHHHHHhhcchHHHHhhhc--cHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCC-------------hhhH
Confidence 9999999999999999887 5677777777777666522 35667788888887662 3566
Q ss_pred HHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 002876 765 NGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSN 829 (872)
Q Consensus 765 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~ 829 (872)
......+.+.+..+.. ....++-+..+.+.+.....| .+.+||.+|..+++.+.+.+|++
T Consensus 389 ~~~~~~l~r~~~~~~~---~~~~~~t~~~l~p~~~~~~~D--~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 389 GECLLLLDRKLRKLGP---KTVEKETVKTLVPHLIKHIND--TDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred HHHHHHHHHHHhhcCC---cCcchhhHHHHhHHHhhhccC--CcHHHHHHHHHHHHHHHHHhhHH
Confidence 6677777777776542 123456677888999988875 78999999999999999999965
No 137
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.26 Score=58.13 Aligned_cols=223 Identities=16% Similarity=0.186 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHh-hhhhHhhhHHHHHHHHhhhcCCCh--hhHHHH-HHHHHHHHHHHHhccccccHHHHHHHHHHHccC
Q 002876 627 EAMLAIGALAYAT-GQDFLKYMPEFYKYVEMGLQNFED--YQVCAI-TVGVVGDLCRALEDKILPYCDGIMTQLLKDLSS 702 (872)
Q Consensus 627 ~a~~~l~~l~~~~-~~~~~~~~~~i~~~l~~~l~~~~~--~~v~~~-a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (872)
.+..+.-+++..+ ...|.|.+..++..-...+....+ ...|.. -+.....+...+...+.||...++......|..
T Consensus 1368 sV~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~L~k 1447 (1621)
T KOG1837|consen 1368 SVQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLERLISFYHFADYLQESLKSIVTPYFGYLLEPRVILLKK 1447 (1621)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444444444333 345666655555444433322222 122322 233555666667777889988887776666643
Q ss_pred CCCC----------CCCc-h-----hHHHHHHHHHHHhc-cchH--HhHH-HHHHHHHHHHhhccCCCCCCccHHHHHHH
Q 002876 703 NQLH----------RSVK-P-----PIFSCFGDIALAIG-ENFE--KYLM-YAMPMLQSAAELSVHTSGVDDDMTEYTNS 762 (872)
Q Consensus 703 ~~~~----------~~v~-~-----~~~~~l~~i~~~~~-~~~~--~~l~-~il~~l~~~l~~~~~~~~~d~~~~~~~~~ 762 (872)
-+.+ ...| + -++.|+.++...-. ..|. +... -..|.+.+..+... . .+..
T Consensus 1448 ~n~s~~~~~~~~~~~~~r~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~-----e----~~~~- 1517 (1621)
T KOG1837|consen 1448 INASKHRWFWLLPVNQSRKPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLL-----E----FYAS- 1517 (1621)
T ss_pred hhhhhhhhhhhhcccccchhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhc-----c----chhh-
Confidence 3211 0111 1 23334433332211 1111 1111 23344444433111 0 0111
Q ss_pred HHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHH
Q 002876 763 LRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKD 842 (872)
Q Consensus 763 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~ 842 (872)
+.+...+...+...+.. .+++++|+..+++ .+.. +.+...|..|+..+..+....|+++.+.+++ ..+
T Consensus 1518 --~~v~~~li~~i~~~~~a-~~~d~~pl~~k~l---~~tr---ss~~~~r~~ai~~~~~l~~~lge~~~~lL~q---~iP 1585 (1621)
T KOG1837|consen 1518 --DIVSKLLIAEIASDSVA-DKDDLKPLNQKIL---KKTR---SSSRKARYLAIIQVKLLYTKLGENVIVLLPQ---SIP 1585 (1621)
T ss_pred --hHHHHHHHHHHHhhccC-ChhhhHHHHHHHH---HHhc---cccHHHHHHHHHHHHHHHHHhcchhHHhhhh---hhH
Confidence 11222223333333322 3333555555333 3222 3467899999999999999999999999998 788
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHhc
Q 002876 843 FLNECLSSDDHMIKESAEWAKLAISKAIS 871 (872)
Q Consensus 843 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (872)
+|.+++++.++.++..+.-..+++..+.|
T Consensus 1586 fLaEL~ED~~~~Ve~~~q~li~q~e~~lG 1614 (1621)
T KOG1837|consen 1586 FLAELMEDEDDEVECLCQKLIRQLEEVLG 1614 (1621)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998888888888888776
No 138
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.45 E-value=0.0041 Score=69.81 Aligned_cols=198 Identities=16% Similarity=0.242 Sum_probs=147.0
Q ss_pred CcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 002876 362 DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (872)
Q Consensus 362 ~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~ 441 (872)
.++++.+-+.+...+.|++|+.|..|+..+..+.+.........+...+...+-..+ .|.|..|...++.++..++...
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~-kDaN~~v~~~aa~~l~~ia~~l 326 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRL-KDANINVVMLAAQILELIAKKL 326 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhc-cCcchhHHHHHHHHHHHHHHhc
Confidence 355666777788888899999999999998888876531233334455555555566 8999999999999999999987
Q ss_pred cCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchh
Q 002876 442 HGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGE 520 (872)
Q Consensus 442 ~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~ 520 (872)
.. ....|...++|.++..+.+ .+.++..+..++..++..+ .+..+.+.++..+.+. +
T Consensus 327 r~-------~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------------~l~~~~~~I~e~lk~k---n 384 (815)
T KOG1820|consen 327 RP-------LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST------------PLSKMSEAILEALKGK---N 384 (815)
T ss_pred ch-------hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------------cHHHHHHHHHHHhcCC---C
Confidence 52 2467888899999999987 5788888887777776532 5667777778888765 6
Q ss_pred hhhHHHHHHHHHHHHHccccC--cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 002876 521 SRLRTAAYETLNEVVRCSTDE--TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSS 595 (872)
Q Consensus 521 ~~v~~~~~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 595 (872)
+.++..+...+....+..+.. ....+..+.|.++...++. + ..+|.++.+++..+...+|..
T Consensus 385 p~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~---------~----~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 385 PQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDT---------D----KDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred hhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCC---------c----HHHHHHHHHHHHHHHHHhhHH
Confidence 889988888888888887732 3445567777777654321 1 257778999999998888764
No 139
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.45 E-value=0.17 Score=52.69 Aligned_cols=282 Identities=20% Similarity=0.186 Sum_probs=167.5
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 002876 37 GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVV 116 (872)
Q Consensus 37 ~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l 116 (872)
.....+...+.+. +..+|..|+..++..-. ....+.+...+.+.++.+|..++.++
T Consensus 43 ~~~~~~~~~l~~~--~~~vr~~aa~~l~~~~~----------------------~~av~~l~~~l~d~~~~vr~~a~~aL 98 (335)
T COG1413 43 EAADELLKLLEDE--DLLVRLSAAVALGELGS----------------------EEAVPLLRELLSDEDPRVRDAAADAL 98 (335)
T ss_pred hhHHHHHHHHcCC--CHHHHHHHHHHHhhhch----------------------HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3566666777663 78899988877544221 12455688889999999999999965
Q ss_pred HHHHHhhcCCCCchhHHHHHHHhhc-CCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcc------cCCCCC
Q 002876 117 AKVAGIELPHKQWPELIGALLSNIH-QLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGM------NASESN 189 (872)
Q Consensus 117 ~~i~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l------~~~~~~ 189 (872)
+.+ .-++.++.+...+. +++..+|..+...|+.+-..- .+..++..+.... ......
T Consensus 99 g~~--------~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~ 162 (335)
T COG1413 99 GEL--------GDPEAVPPLVELLENDENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAAL 162 (335)
T ss_pred Hcc--------CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchH
Confidence 433 34566777777777 688899999999998764321 1222222221110 000122
Q ss_pred HHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHH
Q 002876 190 NDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAV 269 (872)
Q Consensus 190 ~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~ 269 (872)
..+|..++..+..+-. ......+...+.+....+|..+...+..+.... ..+...+...+
T Consensus 163 ~~~r~~a~~~l~~~~~------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~ 222 (335)
T COG1413 163 LDVRAAAAEALGELGD------------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKAL 222 (335)
T ss_pred HHHHHHHHHHHHHcCC------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHh
Confidence 3678888877776321 234455566677778899999999998876643 33445566677
Q ss_pred hcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHH
Q 002876 270 REDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAG 349 (872)
Q Consensus 270 ~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a 349 (872)
.+.+..+|..++..++.+... .. .+.+...+.. ..|..+..+
T Consensus 223 ~~~~~~vr~~~~~~l~~~~~~-------------------------~~----~~~l~~~l~~---------~~~~~~~~~ 264 (335)
T COG1413 223 SDESLEVRKAALLALGEIGDE-------------------------EA----VDALAKALED---------EDVILALLA 264 (335)
T ss_pred cCCCHHHHHHHHHHhcccCcc-------------------------hh----HHHHHHHHhc---------cchHHHHHH
Confidence 888888888888766554321 11 1222322221 113333322
Q ss_pred HHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHH
Q 002876 350 GTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDT 429 (872)
Q Consensus 350 ~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~ 429 (872)
...++ +.. .+.-...+...+.+.+|..|..+...++.+..... ........ .+....+|..
T Consensus 265 ~~~~~------~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~a~~~~~-~~~~~~~~~~ 325 (335)
T COG1413 265 AAALG------ALD-LAEAALPLLLLLIDEANAVRLEAALALGQIGQEKA-----------VAALLLAL-EDGDADVRKA 325 (335)
T ss_pred HHHhc------ccC-chhhHHHHHHHhhcchhhHHHHHHHHHHhhcccch-----------HHHHHHHh-cCCchhhHHH
Confidence 22222 111 12223344555667788899988888887766542 12233344 6667777776
Q ss_pred HHHHHH
Q 002876 430 TAWTLG 435 (872)
Q Consensus 430 a~~~l~ 435 (872)
+.....
T Consensus 326 ~~~~~~ 331 (335)
T COG1413 326 ALILLE 331 (335)
T ss_pred HHHHHH
Confidence 665544
No 140
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.43 E-value=0.4 Score=55.30 Aligned_cols=158 Identities=13% Similarity=0.201 Sum_probs=111.7
Q ss_pred CCch--hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhc-----ccC---CCCCHHHHHHH
Q 002876 127 KQWP--ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQG-----MNA---SESNNDVRLAA 196 (872)
Q Consensus 127 ~~~~--~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~-----l~~---~~~~~~vr~~a 196 (872)
..|+ .++..|.+.+-++.+.+|+++...+..+.+.- .+.++...++.++-.++.. +.. +.--..||.+.
T Consensus 71 ~~w~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h-~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~c 149 (1549)
T KOG0392|consen 71 RQWPFLSFLEELVNDLFEPQWEIRHGAAIALREILKTH-GDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREAC 149 (1549)
T ss_pred ccccHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHH
Confidence 4674 68899999999999999999999998888765 4444333444444333222 220 12235789999
Q ss_pred HHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhh
Q 002876 197 TRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPV 276 (872)
Q Consensus 197 l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 276 (872)
.++|...+.+.... .....++++.+....+.+++|...+..+...+....+.+...++.+++.++..+++.++++
T Consensus 150 aq~L~~~l~~~~~s-----~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv 224 (1549)
T KOG0392|consen 150 AQALGAYLKHMDES-----LIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDV 224 (1549)
T ss_pred HHHHHHHHHhhhhH-----hhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Confidence 99999877654322 2246677777777778899998877777666655555555666788888888899999999
Q ss_pred HHHHHHHHHHHHHH
Q 002876 277 ALQAIEFWSSVCDE 290 (872)
Q Consensus 277 ~~~a~~~~~~l~~~ 290 (872)
+..|..++..+...
T Consensus 225 ~~~aa~~l~~~~s~ 238 (1549)
T KOG0392|consen 225 RSVAAQFLVPAPSI 238 (1549)
T ss_pred HHHHHHHhhhhhHH
Confidence 98888887776653
No 141
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.43 E-value=0.0002 Score=61.59 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=84.6
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH-HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccc
Q 002876 609 MMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP-EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILP 687 (872)
Q Consensus 609 i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 687 (872)
+++.+.+.+.+.+..++..++.+++.++.........+.. .++|.+.+.++++ ++.++..++++++.++...+.....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcHHHHHH
Confidence 5677788888888899999999999999765544444454 7889999888864 6699999999999998765422222
Q ss_pred cH-HHHHHHHHHHccCCCCCCCCchhHHHHHHHHH
Q 002876 688 YC-DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 721 (872)
Q Consensus 688 ~~-~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~ 721 (872)
+. .++++.+.+.+.+. +..+++.++++++.++
T Consensus 87 ~~~~g~l~~l~~~l~~~--~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSS--NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcC--CHHHHHHHHHHHHHhh
Confidence 22 24788888988877 6788899999998875
No 142
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.39 E-value=0.0011 Score=53.05 Aligned_cols=86 Identities=30% Similarity=0.446 Sum_probs=63.8
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhccc
Q 002876 412 NFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFED 490 (872)
Q Consensus 412 ~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~ 490 (872)
+.++..+.+|+++.+|..++++++++.. +.+++.+...++| ++.||..|+++|+.+..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~---- 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD-----------------PEAIPALIELLKDEDPMVRRAAARALGRIGD---- 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 4455555478999999999999994422 1677888888876 79999999999998732
Q ss_pred CCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHH
Q 002876 491 AISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLN 532 (872)
Q Consensus 491 ~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~ 532 (872)
+..++.+.+.+.+.+ +..+|..+..+|+
T Consensus 61 ------------~~~~~~L~~~l~~~~--~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ------------PEAIPALIKLLQDDD--DEVVREAAAEALG 88 (88)
T ss_dssp ------------HHTHHHHHHHHTC-S--SHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHcCCC--cHHHHHHHHhhcC
Confidence 356777778777654 5667888888774
No 143
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.38 E-value=0.00036 Score=42.20 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=26.7
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 002876 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (872)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (872)
++|.+.+.+ +|++|.||.+|+++++.++++
T Consensus 1 llp~l~~~l-~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLL-NDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHH-T-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHc-CCCCHHHHHHHHHHHHHHHhh
Confidence 578899999 999999999999999999875
No 144
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.34 E-value=0.12 Score=54.34 Aligned_cols=241 Identities=14% Similarity=0.066 Sum_probs=149.2
Q ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhh
Q 002876 93 IKSFILKTLS-SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH 171 (872)
Q Consensus 93 i~~~ll~~l~-~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~ 171 (872)
....++..|. +++..++..++.++. .. .-+..+..++..+.+.++.+|.++...|+.+-
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~-----~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~------------ 114 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---AQ-----EDALDLRSVLAVLQAGPEGLCAGIQAALGWLG------------ 114 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---cc-----CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC------------
Confidence 3556777884 566777765544431 11 11334888999999998899999999997542
Q ss_pred HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhH
Q 002876 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (872)
Q Consensus 172 ~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 251 (872)
.+...+.+...+. +.++.+|..++.++...- . .-.+.+...++++++.+|..++.+++.+-..
T Consensus 115 ~~~a~~~L~~~L~--~~~p~vR~aal~al~~r~---~----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 115 GRQAEPWLEPLLA--ASEPPGRAIGLAALGAHR---H----------DPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred chHHHHHHHHHhc--CCChHHHHHHHHHHHhhc---c----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 1223344555556 789999999998877611 0 1123455567799999999999999986542
Q ss_pred HhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhc
Q 002876 252 EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLK 331 (872)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~ 331 (872)
..++.+...+.+.++.||..|+..+..+... .. .+.+......
T Consensus 178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~-------------------------~A----~~~l~~~~~~ 220 (410)
T TIGR02270 178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGSR-------------------------LA----WGVCRRFQVL 220 (410)
T ss_pred --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCH-------------------------hH----HHHHHHHHhc
Confidence 1122233457889999999999877655431 11 1122221110
Q ss_pred ccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHH
Q 002876 332 QEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIAL 411 (872)
Q Consensus 332 ~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~ 411 (872)
.+ +..+..+...+... |. +..++.+...+.++. +|.+++.++|.+... ..+
T Consensus 221 --------~g-~~~~~~l~~~lal~----~~---~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p-----------~av 271 (410)
T TIGR02270 221 --------EG-GPHRQRLLVLLAVA----GG---PDAQAWLRELLQAAA--TRREALRAVGLVGDV-----------EAA 271 (410)
T ss_pred --------cC-ccHHHHHHHHHHhC----Cc---hhHHHHHHHHhcChh--hHHHHHHHHHHcCCc-----------chH
Confidence 00 12222111111111 22 245566666666554 899999999977653 246
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 002876 412 NFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (872)
Q Consensus 412 ~~l~~~l~~d~~~~vr~~a~~~l~~l~~ 439 (872)
+.++..+ .|+. ++..|-.++.++..
T Consensus 272 ~~L~~~l-~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 272 PWCLEAM-REPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHh-cCcH--HHHHHHHHHHHhhC
Confidence 6777888 5554 89999999888877
No 145
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.69 Score=55.95 Aligned_cols=243 Identities=12% Similarity=0.109 Sum_probs=145.5
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC--ChhHHHHHHHHHHHHH
Q 002876 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLA 485 (872)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~ 485 (872)
...+..+...+ ..++|..|.++..++++++...+ ...+...+...++..+.+ ++..|..-.-+++.+-
T Consensus 875 ~~~~~l~~~sl-~~~~p~~rc~~~ea~arLaq~v~---------~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lh 944 (2067)
T KOG1822|consen 875 SSALTLIVNSL-INPNPKLRCAAAEALARLAQVVG---------SAPFVASLAQNSFDKLASARDPITRTGHSLALGCLH 944 (2067)
T ss_pred HHHHHHHhhhh-ccCChHHHHHHHHHHHHHHHhcc---------ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 34455667777 88999999999999999999875 356777888888888885 3455555556677666
Q ss_pred HhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhc
Q 002876 486 QGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQK 565 (872)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 565 (872)
+..+. -.=.+++..-+..++...+++. .|.|++-++.++..++...+..+..++...+..+...+-...
T Consensus 945 kyvgs-----~~s~qhl~t~v~illal~~Ds~--~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p---- 1013 (2067)
T KOG1822|consen 945 KYVGS-----IGSGQHLNTSVSILLALATDST--SPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVP---- 1013 (2067)
T ss_pred HhccC-----CCCchhcccHHHHHHHHhhcCC--CchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCC----
Confidence 65432 1222466666777777777765 678999999999999998887776666666666655543311
Q ss_pred CChhHHHHHHHHHHHHHHHHH------HHHHHhCCCcchh---hHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 002876 566 LSSDEREKQNEIQGLLCGCLQ------VIIQKLGSSEQTK---YVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALA 636 (872)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~l~------~l~~~l~~~~~~~---~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~ 636 (872)
...- ++....-.++. .+.+.+|++-++. +....+-...+-...-.+..++..+..+++.++-.+.
T Consensus 1014 --~~~~----ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlh 1087 (2067)
T KOG1822|consen 1014 --TSHV----EVHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLH 1087 (2067)
T ss_pred --cchh----hhhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH
Confidence 0011 11112222333 5666666541100 1122222233333333344456667778888887775
Q ss_pred HHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Q 002876 637 YATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRA 680 (872)
Q Consensus 637 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 680 (872)
-..+. .-.++.+++.+...+.... .-.|...+.++..+++.
T Consensus 1088 lFapr--~~n~~~lV~~L~~~l~s~~-~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1088 LFAPR--HVNLDSLVLQLCSLLSSSY-LILRRASFSCLRQLVQR 1128 (2067)
T ss_pred hhcch--hccHHHHHHHHHHHhcchh-hhhhhhHHhhhhHHhHH
Confidence 43332 2234556666666555332 23445555555555544
No 146
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.34 E-value=0.084 Score=55.36 Aligned_cols=242 Identities=14% Similarity=0.010 Sum_probs=148.1
Q ss_pred hhHHHHHHHhhc-CCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhch
Q 002876 130 PELIGALLSNIH-QLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (872)
Q Consensus 130 ~~l~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (872)
+..++.+...+. +++..++..+...+... .-...+..++..+. +.+..||..+.++|+.+-
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~------------~~~~~~~~L~~~L~--d~~~~vr~aaa~ALg~i~---- 114 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ------------EDALDLRSVLAVLQ--AGPEGLCAGIQAALGWLG---- 114 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc------------CChHHHHHHHHHhc--CCCHHHHHHHHHHHhcCC----
Confidence 445666666663 45556655555444211 01112566667777 788889999999998621
Q ss_pred hhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 002876 209 ANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVC 288 (872)
Q Consensus 209 ~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~ 288 (872)
.+.....+...+.++++.+|..++..+...-. .-.+.+...+++.+..++..|+..++.+.
T Consensus 115 --------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 115 --------GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred --------chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 13456667777788999999888866665111 11234455567899999999999887765
Q ss_pred HHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhch
Q 002876 289 DEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLV 368 (872)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l 368 (872)
.. . .++.+...+.. ++ -.+|.+|..++..+.. +..
T Consensus 176 ~~-------------------------~----a~~~L~~al~d--~~-------~~VR~aA~~al~~lG~-------~~A 210 (410)
T TIGR02270 176 RR-------------------------L----SESTLRLYLRD--SD-------PEVRFAALEAGLLAGS-------RLA 210 (410)
T ss_pred cc-------------------------c----chHHHHHHHcC--CC-------HHHHHHHHHHHHHcCC-------HhH
Confidence 31 1 12223332221 11 2788888877754422 222
Q ss_pred HHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCC
Q 002876 369 MPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET 448 (872)
Q Consensus 369 ~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 448 (872)
...+......+.+..+......++.. -. +..++.+...+ +++. +|..+++++|.+..-
T Consensus 211 ~~~l~~~~~~~g~~~~~~l~~~lal~---~~--------~~a~~~L~~ll-~d~~--vr~~a~~AlG~lg~p-------- 268 (410)
T TIGR02270 211 WGVCRRFQVLEGGPHRQRLLVLLAVA---GG--------PDAQAWLRELL-QAAA--TRREALRAVGLVGDV-------- 268 (410)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHhC---Cc--------hhHHHHHHHHh-cChh--hHHHHHHHHHHcCCc--------
Confidence 23333323344444444444333332 11 35677788888 7655 999999999976652
Q ss_pred cccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 002876 449 PIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLA 485 (872)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~ 485 (872)
..++.|+..+.|.+ ++..|-.++..+.
T Consensus 269 ---------~av~~L~~~l~d~~-~aR~A~eA~~~It 295 (410)
T TIGR02270 269 ---------EAAPWCLEAMREPP-WARLAGEAFSLIT 295 (410)
T ss_pred ---------chHHHHHHHhcCcH-HHHHHHHHHHHhh
Confidence 56777888886654 8888888888875
No 147
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.32 E-value=0.046 Score=56.99 Aligned_cols=199 Identities=20% Similarity=0.245 Sum_probs=125.3
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHh
Q 002876 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK 253 (872)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 253 (872)
...+.+.+.+. +++..+|..+...++.+- ....++.+...+.+.++.+|..+..+|+.+-.
T Consensus 43 ~~~~~~~~~l~--~~~~~vr~~aa~~l~~~~------------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----- 103 (335)
T COG1413 43 EAADELLKLLE--DEDLLVRLSAAVALGELG------------SEEAVPLLRELLSDEDPRVRDAAADALGELGD----- 103 (335)
T ss_pred hhHHHHHHHHc--CCCHHHHHHHHHHHhhhc------------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-----
Confidence 44566666777 668999999998766521 14567778888889999999999997766332
Q ss_pred hHhhHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcc
Q 002876 254 LAPYIQDIFNITAKAVR-EDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQ 332 (872)
Q Consensus 254 ~~~~~~~l~~~~~~~~~-~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 332 (872)
+.-++.+...+. +.+..+|..+...+..+.+.. .+..++..+.......
T Consensus 104 -----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------------------------a~~~l~~~l~~~~~~~ 153 (335)
T COG1413 104 -----PEAVPPLVELLENDENEGVRAAAARALGKLGDER-------------------------ALDPLLEALQDEDSGS 153 (335)
T ss_pred -----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------------------------hhHHHHHHhccchhhh
Confidence 223333444444 688889998888877765421 1111222211100000
Q ss_pred cCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHH
Q 002876 333 EEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALN 412 (872)
Q Consensus 333 ~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~ 412 (872)
--...+...|.+|..+...+..+.. +...+.+...+.+....+|.++..+++.+.... ..+.+
T Consensus 154 -a~~~~~~~~~~~r~~a~~~l~~~~~-------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~ 216 (335)
T COG1413 154 -AAAALDAALLDVRAAAAEALGELGD-------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAAD 216 (335)
T ss_pred -hhhhccchHHHHHHHHHHHHHHcCC-------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHH
Confidence 0000011224566665555544322 344566667777777899999999998887653 34456
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHHhhh
Q 002876 413 FMLTALMQDPNNHVKDTTAWTLGRMFE 439 (872)
Q Consensus 413 ~l~~~l~~d~~~~vr~~a~~~l~~l~~ 439 (872)
.+...+ .|+++.+|..++..+|.+..
T Consensus 217 ~l~~~~-~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 217 LLVKAL-SDESLEVRKAALLALGEIGD 242 (335)
T ss_pred HHHHHh-cCCCHHHHHHHHHHhcccCc
Confidence 677888 99999999999988886554
No 148
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.30 E-value=0.35 Score=51.78 Aligned_cols=140 Identities=11% Similarity=0.062 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH-HHHHHHH
Q 002876 577 IQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP-EFYKYVE 655 (872)
Q Consensus 577 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~ 655 (872)
.+.++|.|+..+......-+ -...-..+++.+++++.+++..+...++.++.+++--++.--..|+. ..+..+.
T Consensus 393 ~~aaa~l~~~s~srsV~aL~-----tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 393 FVAAALLCLKSFSRSVSALR-----TGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----cCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 34456666665544332110 00122356666777888888889999999999999887765445554 3677777
Q ss_pred hhhcCCChhhHHHHHHHHHHHHHHHHhcc--ccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHh
Q 002876 656 MGLQNFEDYQVCAITVGVVGDLCRALEDK--ILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAI 724 (872)
Q Consensus 656 ~~l~~~~~~~v~~~a~~~l~~l~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~ 724 (872)
..+.+. ++.+|..++|++.++.-..++. +.++..--...+.....++ ++.|.+.++..+-.+....
T Consensus 468 s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~--d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 468 SMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP--DWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC--CHHHHHHHHHHHHHhhcCc
Confidence 777654 5689999999999998877643 3344444445555666666 8899999999988887653
No 149
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.19 Score=48.49 Aligned_cols=295 Identities=16% Similarity=0.181 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccc---hhhHHHHHHHHHhcccC
Q 002876 109 RSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE---QDHVNKILTAVVQGMNA 185 (872)
Q Consensus 109 r~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~---~~~~~~i~~~l~~~l~~ 185 (872)
...+..++.++++..+|...-|.+++.|...+..++..++.-++..++.+.++++....+ ...-..+++.++..+.
T Consensus 60 ttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg- 138 (524)
T KOG4413|consen 60 TTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG- 138 (524)
T ss_pred hhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc-
Confidence 344777888999887774456889999999999999999999999999999987433221 1224567888888888
Q ss_pred CCCCHHHHHHHHHHHHHhHhhch---hhccChhhHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhH-HH
Q 002876 186 SESNNDVRLAATRALYNALGFAQ---ANFSNDMERD-YIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI-QD 260 (872)
Q Consensus 186 ~~~~~~vr~~al~~l~~~~~~~~---~~~~~~~~~~-~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~-~~ 260 (872)
..+.+|-.+|++.+.++..+-. -.|..+...+ ...+.-. .-+.-+|..+++.+..+.+..|......- ..
T Consensus 139 -geddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaa----kcndiaRvRVleLIieifSiSpesaneckkSG 213 (524)
T KOG4413|consen 139 -GEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAA----KCNDIARVRVLELIIEIFSISPESANECKKSG 213 (524)
T ss_pred -CCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHh----hhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhh
Confidence 6889999999999998764311 1111100000 1111101 11334566677777777776665433221 36
Q ss_pred HHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhh--hHHHHHHHHHhcccCCcc
Q 002876 261 IFNITAKAVRE-DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALP--VLVPLLLETLLKQEEDQD 337 (872)
Q Consensus 261 l~~~~~~~~~~-~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~~l~~~l~~~~~d~~ 337 (872)
++..+...+.. .+.-++..+++....+++.+ +.+++++ .++..+++.+...+.|+
T Consensus 214 LldlLeaElkGteDtLVianciElvteLaete---------------------HgreflaQeglIdlicnIIsGadsdP- 271 (524)
T KOG4413|consen 214 LLDLLEAELKGTEDTLVIANCIELVTELAETE---------------------HGREFLAQEGLIDLICNIISGADSDP- 271 (524)
T ss_pred HHHHHHHHhcCCcceeehhhHHHHHHHHHHHh---------------------hhhhhcchhhHHHHHHHHhhCCCCCc-
Confidence 77777777765 45557888888888887653 2233332 46677777766433321
Q ss_pred cCCccchHhHHHHHHHHHHHHHcCC---------cchhchHHHHH---hhhcCcchhhhHHHHHHHHHhhCCCCCCcc-h
Q 002876 338 QDEGAWNIAMAGGTCLGLVARTVGD---------DIVPLVMPFVE---ENITKQEWRQREAATYAFGSILEGPSPEKL-V 404 (872)
Q Consensus 338 ~~~~~~~~r~~a~~~l~~l~~~~~~---------~~~~~l~~~l~---~~~~~~~~~~r~aal~~l~~l~~~~~~~~~-~ 404 (872)
++- ..++-.+++.+|+ .+...+..++. +.+...++...++|+-++|.+..+.....+ .
T Consensus 272 -----fek----fralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlll 342 (524)
T KOG4413|consen 272 -----FEK----FRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLL 342 (524)
T ss_pred -----HHH----HHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHh
Confidence 111 1233333333432 22222333333 334445677889999999998876521111 0
Q ss_pred HHHHHHHHHHHHHhccCCcH-HHHHHHHHHHHHhhhhc
Q 002876 405 PLVNIALNFMLTALMQDPNN-HVKDTTAWTLGRMFEFL 441 (872)
Q Consensus 405 ~~~~~i~~~l~~~l~~d~~~-~vr~~a~~~l~~l~~~~ 441 (872)
..-+.-...++... -|.+. .-+.++..++..++...
T Consensus 343 kTgppaaehllara-fdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 343 KTGPPAAEHLLARA-FDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred ccCChHHHHHHHHH-hcccccchHHHHHHHHHHhhccc
Confidence 01122333344333 34332 33456778888777754
No 150
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.4 Score=51.97 Aligned_cols=122 Identities=12% Similarity=0.020 Sum_probs=89.3
Q ss_pred HHHHHHHH-HhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccc
Q 002876 609 MMGLFLRV-FAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILP 687 (872)
Q Consensus 609 i~~~l~~~-l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 687 (872)
.+..++.. .++.+.+||..|..+||.++..-++ .+|..+..|..+-++.||..+.-++|..+...|.
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~---- 622 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL---- 622 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc----
Confidence 33444444 6678899999999999998754433 4456666676677889999999999988776662
Q ss_pred cHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhc
Q 002876 688 YCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 688 ~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~ 746 (872)
..-++.|-.+..++ ..-||+.++.+++-|.....+...|-...+-..+.+.+.++
T Consensus 623 --~eAi~lLepl~~D~--~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 623 --KEAINLLEPLTSDP--VDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred --HHHHHHHhhhhcCh--HHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 22333333344455 45699999999999999888888888888888888887766
No 151
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=97.22 E-value=0.032 Score=59.01 Aligned_cols=264 Identities=13% Similarity=0.149 Sum_probs=149.8
Q ss_pred CcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccch
Q 002876 378 KQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC 456 (872)
Q Consensus 378 ~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 456 (872)
++.|..-...+..|..+...........++ ..++..++..+ ..++++-|......+.++...+.. ......
T Consensus 101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~-~S~D~rER~~lk~~l~~iy~k~~~-------~r~~Ir 172 (409)
T PF01603_consen 101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELF-DSPDPRERDYLKTILHRIYGKFPN-------LRSFIR 172 (409)
T ss_dssp -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTT-TSSTHHHHHHHHHHHHHHHHH-TT-------THHHHH
T ss_pred ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhhh-------hHHHHH
Confidence 355766666666666666654322233344 46677888899 999999999999999998887642 222333
Q ss_pred HHHHHHHHHhccC--ChhHHHHHHHHHHHHHHhcccCCCCCCCCch-hHHHHHHHHHHhhccCCchhhhhHHHHHHHHHH
Q 002876 457 QQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTP-FFQEIVQALLTVTHREDAGESRLRTAAYETLNE 533 (872)
Q Consensus 457 ~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~-~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~ 533 (872)
..+-..+.+.+.+ ...-.......++.+..++. .-+.+ |..-+...++.....+. -.........++..
T Consensus 173 ~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~------~plk~eh~~fl~~vllPLh~~~~--~~~y~~~L~~~~~~ 244 (409)
T PF01603_consen 173 KSINNIFYRFIYETERHNGIAELLEILGSIINGFA------VPLKEEHKQFLRKVLLPLHKSPH--LSSYHQQLSYCVVQ 244 (409)
T ss_dssp HHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--------SS--HHHHHHHHHTTGGGGGSTG--GGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC------CCCcHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHH
Confidence 3344444445543 23334456667777776652 23333 33334444555544432 23344566667766
Q ss_pred HHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHH
Q 002876 534 VVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLF 613 (872)
Q Consensus 534 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l 613 (872)
++...+. +...++..++..|-.. ...++. ..+.-+..++..+++. .+.....+++..+
T Consensus 245 f~~kdp~----l~~~~i~~llk~WP~t-------~s~Kev------~FL~el~~il~~~~~~-----~f~~i~~~lf~~l 302 (409)
T PF01603_consen 245 FLEKDPS----LAEPVIKGLLKHWPKT-------NSQKEV------LFLNELEEILEVLPPE-----EFQKIMVPLFKRL 302 (409)
T ss_dssp HHHH-GG----GHHHHHHHHHHHS-SS--------HHHHH------HHHHHHHHHHTT--HH-----HHHHHHHHHHHHH
T ss_pred HHHhCch----hHHHHHHHHHHhCCCC-------CchhHH------HHHHHHHHHHHhcCHH-----HHHHHHHHHHHHH
Confidence 6665543 3344556666666431 111221 2445555555554433 2778888999999
Q ss_pred HHHHhccccchhhHHHHHHHH--HHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHH
Q 002876 614 LRVFAIRSATAHEEAMLAIGA--LAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCR 679 (872)
Q Consensus 614 ~~~l~~~~~~~~~~a~~~l~~--l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 679 (872)
..++++++..|-+.|+..+.+ +...........++.++|.+.+..+++=+..+|..+..++..+..
T Consensus 303 a~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 303 AKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999988887664 344444443344455555555544433344788888777766644
No 152
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.45 Score=51.37 Aligned_cols=173 Identities=13% Similarity=0.142 Sum_probs=111.0
Q ss_pred ChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH--hhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc
Q 002876 86 DSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAG--IELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS 163 (872)
Q Consensus 86 ~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~--~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~ 163 (872)
..+..+++...++++..+++..||...+++++.+.. ...+...+..+...+...+.+..+.+|..|+.+|.++-..-.
T Consensus 79 e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 79 EEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred hhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence 345667777788888888899999999999999987 333434566777777888888899999999999998864321
Q ss_pred ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 002876 164 SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECL 243 (872)
Q Consensus 164 ~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l 243 (872)
.+.. .+...+...+++ |++++||.+|+.++..- +.-++.+.+...|-+...|+-++..+
T Consensus 159 dee~------~v~n~l~~liqn-DpS~EVRRaaLsnI~vd--------------nsTlp~IveRarDV~~anRrlvY~r~ 217 (892)
T KOG2025|consen 159 DEEC------PVVNLLKDLIQN-DPSDEVRRAALSNISVD--------------NSTLPCIVERARDVSGANRRLVYERC 217 (892)
T ss_pred CCcc------cHHHHHHHHHhc-CCcHHHHHHHHHhhccC--------------cccchhHHHHhhhhhHHHHHHHHHHh
Confidence 1111 222333333444 99999999999776541 12234445555566666676665544
Q ss_pred HHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHH
Q 002876 244 VAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEF 283 (872)
Q Consensus 244 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~ 283 (872)
..=+...+- -+.+-+.++-..+.|.+..++.++.+.
T Consensus 218 lpkid~r~l----si~krv~LlewgLnDRe~sVk~A~~d~ 253 (892)
T KOG2025|consen 218 LPKIDLRSL----SIDKRVLLLEWGLNDREFSVKGALVDA 253 (892)
T ss_pred hhhhhhhhh----hHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 332222221 123444555556677776776655544
No 153
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.19 E-value=0.018 Score=55.78 Aligned_cols=193 Identities=12% Similarity=0.156 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhc-cccchhhHHHHHHHHHHHHhhhhhHhhhH--HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHh--
Q 002876 608 QMMGLFLRVFAI-RSATAHEEAMLAIGALAYATGQDFLKYMP--EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALE-- 682 (872)
Q Consensus 608 ~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-- 682 (872)
+-++.++.+|+. .++.+++.++.+++..+.... ....+. ..++.+.+.+.++ ++.+|..|++++..++....
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~--nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPF--NQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChh--HHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhhH
Confidence 445777778875 467789999999999764321 112222 3678888888865 66999999999987765433
Q ss_pred ccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHH
Q 002876 683 DKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNS 762 (872)
Q Consensus 683 ~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~ 762 (872)
..+..|+++++... .+...+..++..++.++..++.. .+....+...+|.++..+... + ..
T Consensus 89 ~~Ik~~i~~Vc~~~----~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G------~-------~~ 149 (254)
T PF04826_consen 89 EQIKMYIPQVCEET----VSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSG------S-------EK 149 (254)
T ss_pred HHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcC------C-------hH
Confidence 22344555554444 33333566778889999988643 333333444455555555443 2 24
Q ss_pred HHHHHHHHHHHHhhcccCCCcccccccchH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 002876 763 LRNGILEAFSGIFQGFKGSPKTQLLMPYAP-HILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSN 829 (872)
Q Consensus 763 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~ 829 (872)
+|..++.++..+... +...+..+. +....+..++.. +.+.++...++.++..|...++.+
T Consensus 150 ~k~~vLk~L~nLS~n------p~~~~~Ll~~q~~~~~~~Lf~~-~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 150 TKVQVLKVLVNLSEN------PDMTRELLSAQVLSSFLSLFNS-SESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHHHHHHHhccC------HHHHHHHHhccchhHHHHHHcc-CCccHHHHHHHHHHHHHHHhhCcc
Confidence 667787777776543 222222221 344455555554 567899999999999999999866
No 154
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.18 E-value=0.03 Score=58.29 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcC--CCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcccc
Q 002876 88 SVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP--HKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSD 165 (872)
Q Consensus 88 ~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~ 165 (872)
+.-+.+...+++++.+++..||....++++.+.....+ ..-++.++..|...+-+..+.+|..|+.+|.++-+...
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~-- 164 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL-- 164 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC--
Confidence 34456666788888889999999999999999876533 22355666777777777788999999999988765431
Q ss_pred ccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Q 002876 166 AVEQDHVNKILTAVVQGMNASESNNDVRLAATRALY 201 (872)
Q Consensus 166 ~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~ 201 (872)
..-..+...+...+++ ||+.+||.+|+-.+.
T Consensus 165 ----neen~~~n~l~~~vqn-DPS~EVRr~allni~ 195 (885)
T COG5218 165 ----NEENRIVNLLKDIVQN-DPSDEVRRLALLNIS 195 (885)
T ss_pred ----ChHHHHHHHHHHHHhc-CcHHHHHHHHHHHee
Confidence 1122233344444454 999999999885543
No 155
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.17 E-value=0.0012 Score=58.96 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=79.9
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH-HhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHH---HHH
Q 002876 648 PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRA-LEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI---ALA 723 (872)
Q Consensus 648 ~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i---~~~ 723 (872)
+.++|.++..+...++ .-+-.|...+.++... .++.+.|.+++++..+-+.|.+. +.++...++.++..+ ...
T Consensus 37 ~~~Lpif~dGL~Et~~-Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr--~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEH-PYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR--DPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hhHHHHHHhhhhccCc-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhh
Confidence 4567777777776655 5677888888888888 77889999999999999999988 788999999999999 677
Q ss_pred hccchHHhHHHHHHHHHHHHhh
Q 002876 724 IGENFEKYLMYAMPMLQSAAEL 745 (872)
Q Consensus 724 ~~~~~~~~l~~il~~l~~~l~~ 745 (872)
.|+.+.||..+++|.+.-..+.
T Consensus 114 vG~aLvPyyrqLLp~ln~f~~k 135 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLNLFKNK 135 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999754443
No 156
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.11 E-value=0.011 Score=53.38 Aligned_cols=142 Identities=24% Similarity=0.253 Sum_probs=103.0
Q ss_pred hhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCC
Q 002876 365 VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGS 444 (872)
Q Consensus 365 ~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 444 (872)
++.+...+...+.++++..|.+++..++.+++.++.+.+..+-..-+..+++.+++.+.+.+++.++.++..+.....+.
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44555667788888889999999999999998875566767777788888888844556788999999999999976532
Q ss_pred CCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhh
Q 002876 445 TLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVT 513 (872)
Q Consensus 445 ~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l 513 (872)
...........++.+++.+++.+++ ..+...+..+|..+.... +..+.||..++-..+...+
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll~~~------ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD-SSCPETALDALATLLPHH------PTTFRPFANKIESALLSLL 164 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHC------CccccchHHHHHHHHHHHh
Confidence 1111112245667777777776654 456667888888888876 6778888887766665543
No 157
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.99 E-value=0.017 Score=64.39 Aligned_cols=228 Identities=14% Similarity=0.163 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhHhhHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhH
Q 002876 235 IRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYF 313 (872)
Q Consensus 235 ~r~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (872)
.|..|+..|..++...+..+.-.+. .|+|+++..+++...+.|....=.|..+....+...-+.- ++. .+.|
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLv--Ke~-----g~~Y 558 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLV--KEN-----GYKY 558 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHH--hcc-----Ccee
Confidence 4778888999888866654443343 7999999999999888887777778777643211100000 000 0011
Q ss_pred HHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHc--CCc--chhchHHHHHhhhcCc-chhhhHHHH
Q 002876 314 IKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV--GDD--IVPLVMPFVEENITKQ-EWRQREAAT 388 (872)
Q Consensus 314 ~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~--~~~--~~~~l~~~l~~~~~~~-~~~~r~aal 388 (872)
+.+. +-| .+.-+ -+-|..|+-.|..+...+ |.+ +-..++.++.+.++++ .|-.|.=.+
T Consensus 559 F~~v---L~~-------~~~~~-------~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~ 621 (1387)
T KOG1517|consen 559 FLQV---LDP-------SQAIP-------PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLC 621 (1387)
T ss_pred EEEE---ecC-------cCCCC-------HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHH
Confidence 1110 001 00000 133667778888888766 322 3356777888888884 799999999
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcc--c------------Ccc
Q 002876 389 YAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPI--I------------NQG 454 (872)
Q Consensus 389 ~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~------------~~~ 454 (872)
.|||.+=+........-.-....+.++..+ .|+.|+||.+|..+||.+...... ...... . .+.
T Consensus 622 icLG~LW~d~~~Arw~G~r~~AhekL~~~L-sD~vpEVRaAAVFALgtfl~~~~d-~fde~~~~~~~~~~l~~~~~~~E~ 699 (1387)
T KOG1517|consen 622 ICLGRLWEDYDEARWSGRRDNAHEKLILLL-SDPVPEVRAAAVFALGTFLSNGSD-NFDEQTLVVEEEIDLDDERTSIED 699 (1387)
T ss_pred HHHHHHhhhcchhhhccccccHHHHHHHHh-cCccHHHHHHHHHHHHHHhccccc-ccchhhhhhhhhhcchhhhhhHHH
Confidence 999998776532211111245567788889 999999999999999999986321 000000 0 111
Q ss_pred chHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhc
Q 002876 455 NCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGF 488 (872)
Q Consensus 455 ~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
++...+..++..++| .+-||.....+|..+..+.
T Consensus 700 ~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 700 LIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 222222245556666 5778888878888887653
No 158
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.98 E-value=0.0051 Score=54.99 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHh-------------------------------h--hhhHhhhHH-H
Q 002876 606 ADQMMGLFLRVFAIR-SATAHEEAMLAIGALAYAT-------------------------------G--QDFLKYMPE-F 650 (872)
Q Consensus 606 ~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~-------------------------------~--~~~~~~~~~-i 650 (872)
.+++++.++.+++.+ ++.+|.+++.++|.+...- + .....|++. +
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vv 87 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVV 87 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHH
Confidence 468899999998876 5778999999888773210 0 012233333 5
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHH
Q 002876 651 YKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALA 723 (872)
Q Consensus 651 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~ 723 (872)
+..|.+.+++..-..-...++.++..+.+..+....||+++++|.+++.+++. +...++..+.-++.+...
T Consensus 88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~--~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTC--PDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhC--CHHHHHHHHHHHHHHHHH
Confidence 66777778766554555677888888888888778999999999999999977 447888888888887654
No 159
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.96 E-value=1.1 Score=51.55 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=101.9
Q ss_pred CchhHHHHHHHhhcCCChhHHH-HHHHHHHHhhhhcc---ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHh
Q 002876 128 QWPELIGALLSNIHQLPPHTKQ-ATLETLGYICEEVS---SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNA 203 (872)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~r~-~al~~l~~i~~~~~---~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~ 203 (872)
....++..++..+.+..+..+. ++...++.+..+.+ |..+ -+++..+ +..+. ..+..+|.+.+++++++
T Consensus 267 ~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~-~~~l~~l----v~lld--~es~~lRnavlei~~n~ 339 (1251)
T KOG0414|consen 267 GSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLM-LRQLTLL----VDLLD--SESYTLRNAVLEICANL 339 (1251)
T ss_pred ccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHH-HHHHHHH----HHhcC--CchHHHHHHHHHHHHHH
Confidence 3477777788777766443322 23334443333320 3322 2333333 33455 67889999999999997
Q ss_pred Hhhchhhcc-C---hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHH
Q 002876 204 LGFAQANFS-N---DMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQ 279 (872)
Q Consensus 204 ~~~~~~~~~-~---~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~ 279 (872)
+...-..-. . ...++.+++++.+-+.|-++.+|..+++.+..+++..... ......++......+.|...-||..
T Consensus 340 V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p-~~~~~eV~~la~grl~DkSslVRk~ 418 (1251)
T KOG0414|consen 340 VASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIP-LGSRTEVLELAIGRLEDKSSLVRKN 418 (1251)
T ss_pred HHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCC-ccHHHHHHHHHhcccccccHHHHHH
Confidence 753222111 1 1123568888888899999999999999999998864332 2345678888888888888889999
Q ss_pred HHHHHHHHHHH
Q 002876 280 AIEFWSSVCDE 290 (872)
Q Consensus 280 a~~~~~~l~~~ 290 (872)
|+..+..+-..
T Consensus 419 Ai~Ll~~~L~~ 429 (1251)
T KOG0414|consen 419 AIQLLSSLLDR 429 (1251)
T ss_pred HHHHHHHHHhc
Confidence 99988877654
No 160
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.94 E-value=1.5 Score=52.51 Aligned_cols=146 Identities=15% Similarity=0.159 Sum_probs=86.3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcC
Q 002876 220 IMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG 299 (872)
Q Consensus 220 il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~ 299 (872)
+++.+-.-+..++..+|..|...++.+.......+....+.+...++..+.|...++|+.+++......-..+.+
T Consensus 260 vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~----- 334 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI----- 334 (1266)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh-----
Confidence 344444445678899999999999999987776666556678888888999999999999888765543321111
Q ss_pred CCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCc
Q 002876 300 GDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQ 379 (872)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~ 379 (872)
.+. .. ....+...+-|++ + .+|....-....+. .+.-...+.++.++.+.+.|.
T Consensus 335 --------------~~~----~~--~~~~l~~~~~D~~--~---rir~~v~i~~~~v~-~~~l~~~~~ll~~~~eR~rDK 388 (1266)
T KOG1525|consen 335 --------------AKA----ST--ILLALRERDLDED--V---RVRTQVVIVACDVM-KFKLVYIPLLLKLVAERLRDK 388 (1266)
T ss_pred --------------hhH----HH--HHHHHHhhcCChh--h---hheeeEEEEEeehh-HhhhhhhHHHHHHHHHHHhhh
Confidence 010 00 1111111112211 1 11210000000000 011122333778888999999
Q ss_pred chhhhHHHHHHHHHhhC
Q 002876 380 EWRQREAATYAFGSILE 396 (872)
Q Consensus 380 ~~~~r~aal~~l~~l~~ 396 (872)
.|++|.-|+..+..+-.
T Consensus 389 k~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 389 KIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999988887765
No 161
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=96.91 E-value=0.0044 Score=54.81 Aligned_cols=131 Identities=11% Similarity=0.074 Sum_probs=95.0
Q ss_pred HhhhHHHHHHHHhhhcC-----------------CChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCC
Q 002876 644 LKYMPEFYKYVEMGLQN-----------------FEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLH 706 (872)
Q Consensus 644 ~~~~~~i~~~l~~~l~~-----------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 706 (872)
.|.++.++|.+.....- ++..++|+.|+.++..+...+...+. +..+++.+...+.+ +
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D---~ 78 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD---E 78 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS----
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC---c
Confidence 47788899988865432 24579999999999999987765553 67788999999977 3
Q ss_pred CCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccC
Q 002876 707 RSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKG 780 (872)
Q Consensus 707 ~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~ 780 (872)
.++|.-+...+..++...+..+.+.++.+.+.+...++.+...+.-.. +.|...+..++++.+...+-..+.+
T Consensus 79 ~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQ-E~Ek~~E~~rs~lr~~~~l~~~i~~ 151 (169)
T PF08623_consen 79 HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQ-EIEKQQELIRSVLRAVKALNSKIPG 151 (169)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HH-HHHHHHHHHHHHHHHHHHH-HSSTS
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccc-cHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 678888899999999988888889999999999999986643222111 2444677888899988888555543
No 162
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.90 E-value=0.017 Score=52.33 Aligned_cols=140 Identities=15% Similarity=0.182 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhhhhccccccchhhHHHHHHHH-----------H-hcccCCCCCHHHHHHHHHHHHHhHhhchhhccCh
Q 002876 147 TKQATLETLGYICEEVSSDAVEQDHVNKILTAV-----------V-QGMNASESNNDVRLAATRALYNALGFAQANFSND 214 (872)
Q Consensus 147 ~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l-----------~-~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~ 214 (872)
+|.+|+.+++.+++..++..+ ..++..++|.- + -.+. |+++.+|.+|+.++..+++-....+...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l-~~yW~~llP~~~~~~~~~~~sLlt~il~--Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSL-FGYWPALLPDSVLQGRPATPSLLTCILK--DPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred hhHHHHHHHHHHHHhcCCcee-HhhHHHHCCCCCCcCCCCCcchhHHHHc--CCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 688889999888888656555 56666666532 2 2233 8999999999999999886433222111
Q ss_pred hh-------------H-H----HHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHhHH-hhH-hhHHHHHHHHHHHHhcCC
Q 002876 215 ME-------------R-D----YIMRVVCEAT-LSPEVKIRQAAFECLVAISSTYYE-KLA-PYIQDIFNITAKAVREDE 273 (872)
Q Consensus 215 ~~-------------~-~----~il~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~-~~~-~~~~~l~~~~~~~~~~~~ 273 (872)
++ . . .+-..+...+ .+.+..+...+++|+..+++..|- .+. ..+..++..+...+.+.|
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 10 0 0 1122333333 355777888999999999998652 222 345566777777777888
Q ss_pred hhhHHHHHHHHHHHHH
Q 002876 274 EPVALQAIEFWSSVCD 289 (872)
Q Consensus 274 ~~v~~~a~~~~~~l~~ 289 (872)
.+++..++-++..+..
T Consensus 159 ~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 159 PNVRVAALSCLGALLS 174 (182)
T ss_pred CcHHHHHHHHHHHHHc
Confidence 8899988888877764
No 163
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.86 E-value=2.2 Score=53.38 Aligned_cols=336 Identities=12% Similarity=0.110 Sum_probs=174.2
Q ss_pred CCCHHHHHHHHHHHHHhHh-hchh-hccChhhHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHH
Q 002876 187 ESNNDVRLAATRALYNALG-FAQA-NFSNDMERDYIMRVVCEAT-LSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFN 263 (872)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~-~~~~-~~~~~~~~~~il~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~ 263 (872)
+++..++..|+..|..+.. ++.. ...+......+++-+...+ +..+.++|..+++|+..++......+..-++.++.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 5567889999998887654 2211 1111111234555444433 35678999999999999999999888888899999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccc
Q 002876 264 ITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAW 343 (872)
Q Consensus 264 ~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~ 343 (872)
.+-....+..+.+...|++.+..+.......... .-...+..++..+..-. .+..+ .
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~---------------~~~~~F~DlV~cL~~Fa-~q~~~-------~ 1284 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITE---------------TETTTFTDCVNCLIAFT-NSRFN-------K 1284 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccc---------------cchhHHHHHHHHHHHHH-hCcCc-------c
Confidence 8888888888889999998887777532110000 00123333444333322 21111 1
Q ss_pred hHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcC--cchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccC
Q 002876 344 NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITK--QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD 421 (872)
Q Consensus 344 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~--~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d 421 (872)
+....|.+.|..++..+-+.-+..... ...... ...............+.. .+.....--.++..+.... .|
T Consensus 1285 nISL~AI~lL~~~~~~La~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~---~~~~~~lW~pLL~~Ls~l~-~D 1358 (1780)
T PLN03076 1285 DISLNAIAFLRFCATKLAEGDLGSSSR--NKDKEAPPSSPQSGKDGKQESGEFTD---KDDHLYFWFPLLAGLSELS-FD 1358 (1780)
T ss_pred cccHHHHHHHHHHHHHHHhcccccccc--cccccccccccccccccccccccccc---chhHHHHHHHHHHHHHHHh-cC
Confidence 222334444444433321110000000 000000 000000000000000000 0111111122334444445 78
Q ss_pred CcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhcc------------------C------ChhHHHHH
Q 002876 422 PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK------------------D------VPNVAEKA 477 (872)
Q Consensus 422 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~------------------d------~~~v~~~a 477 (872)
+.+.||..|+..|-++....+.... +......+..++--++..+. + ..-..+.+
T Consensus 1359 ~RlEVR~~ALqtLF~iL~~yG~~Fs--~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~ 1436 (1780)
T PLN03076 1359 PRPEIRKSALQVLFDTLRNHGHLFS--LPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETC 1436 (1780)
T ss_pred CcHHHHHHHHHHHHHHHHHhhccCC--HHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHH
Confidence 9999999999988888876542110 11112223333333333221 0 00134555
Q ss_pred HHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHH-HHHHHHHHHHHH
Q 002876 478 CGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAP-MVMQLVPLIMME 556 (872)
Q Consensus 478 ~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~ 556 (872)
..+|..+++.+... -+.+.+.++.++..+..++... +..+......|+..++...|..+.+ ....++..+.+.
T Consensus 1437 ~~AL~~lvdLft~f---Fd~L~~~L~~~l~ll~~ci~q~---n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~l 1510 (1780)
T PLN03076 1437 TLALQLVVDLFVKF---YPTVNPLLKKVLMLLVSFIKRP---HQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEA 1510 (1780)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCc---hHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 55666666554322 3445556777777777777665 4567778899999999998877644 445555555555
Q ss_pred HHH
Q 002876 557 LHQ 559 (872)
Q Consensus 557 l~~ 559 (872)
+..
T Consensus 1511 f~~ 1513 (1780)
T PLN03076 1511 ANA 1513 (1780)
T ss_pred HHH
Confidence 544
No 164
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.74 E-value=0.002 Score=38.96 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=25.9
Q ss_pred hHHHHHhhhcCcchhhhHHHHHHHHHhhCC
Q 002876 368 VMPFVEENITKQEWRQREAATYAFGSILEG 397 (872)
Q Consensus 368 l~~~l~~~~~~~~~~~r~aal~~l~~l~~~ 397 (872)
++|.+.+.++|++|.+|.+|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 468888999999999999999999999865
No 165
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.73 E-value=0.051 Score=52.71 Aligned_cols=187 Identities=14% Similarity=0.167 Sum_probs=120.4
Q ss_pred HHHHHhcCC-CChHHHHHHHHHHHHHHHhhcCCCCc--hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhh
Q 002876 95 SFILKTLSS-PAHDARSTASQVVAKVAGIELPHKQW--PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH 171 (872)
Q Consensus 95 ~~ll~~l~~-~~~~vr~~~a~~l~~i~~~~~~~~~~--~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~ 171 (872)
+.++..|.. .++.++..+..+++..+...+..+.+ .+.++.+...+.++++.+|..|+.++..+.... +. +..
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en---~~~ 90 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-EN---QEQ 90 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hh---HHH
Confidence 457888885 47999999999999987654321222 346778888999999999999999998776543 11 122
Q ss_pred HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhH
Q 002876 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (872)
Q Consensus 172 ~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 251 (872)
....++.+.+.+.+...+..++.++++.|.++.- .+... ......++.++.++..++..+|..++++|..+..+ |
T Consensus 91 Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv--~~~~~--~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p 165 (254)
T PF04826_consen 91 IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV--TNDYH--HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-P 165 (254)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC--Ccchh--hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC-H
Confidence 2333344444333224477899999999998642 11110 11123455567778888999999999999988774 3
Q ss_pred HhhHhhHH-HHHHHHHHHHhc-CChhhHHHHHHHHHHHHHH
Q 002876 252 EKLAPYIQ-DIFNITAKAVRE-DEEPVALQAIEFWSSVCDE 290 (872)
Q Consensus 252 ~~~~~~~~-~l~~~~~~~~~~-~~~~v~~~a~~~~~~l~~~ 290 (872)
......+. +....+...+.. .+.++...++.++..+.+.
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 32222222 344455555554 4567777888777777653
No 166
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.69 E-value=0.079 Score=55.22 Aligned_cols=158 Identities=13% Similarity=0.195 Sum_probs=94.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHhc
Q 002876 220 IMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRED-EEPVALQAIEFWSSVCDEEIDILEEY 298 (872)
Q Consensus 220 il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~~~~l~~~~~~~~~~~ 298 (872)
+++-+.+.+-+.++..|..|+.+|.. .+-+..+++.+...+.+. ...+....++.+..+......+...
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T---------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N- 277 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET---------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN- 277 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc---------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC-
Confidence 44445555556888899999998875 233444555554444321 1122233333333333332222211
Q ss_pred CCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcc-cCCccchHhHHHHHHHHHHHHHcCC---cchhchHHHHHh
Q 002876 299 GGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQD-QDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEE 374 (872)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~-~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~ 374 (872)
..-++.+|+-.|+|-++.++....-... +.+.-|.+|..|+..+..++..++. .+-+.+...+..
T Consensus 278 -----------p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k 346 (576)
T KOG2549|consen 278 -----------PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSK 346 (576)
T ss_pred -----------CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 1135677777777777766432211111 2234599999999999999998874 345667777776
Q ss_pred hhcCc--chhhhHHHHHHHHHhhCCC
Q 002876 375 NITKQ--EWRQREAATYAFGSILEGP 398 (872)
Q Consensus 375 ~~~~~--~~~~r~aal~~l~~l~~~~ 398 (872)
.+.|. .|...++++..|..+....
T Consensus 347 ~l~D~~~~~st~YGai~gL~~lg~~~ 372 (576)
T KOG2549|consen 347 ALLDNKKPLSTHYGAIAGLSELGHEV 372 (576)
T ss_pred HhcCCCCCchhhhhHHHHHHHhhhhh
Confidence 66664 4889999999888877643
No 167
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.68 E-value=0.26 Score=49.98 Aligned_cols=112 Identities=17% Similarity=0.340 Sum_probs=81.7
Q ss_pred hhHHHHHH-HhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhch
Q 002876 130 PELIGALL-SNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (872)
Q Consensus 130 ~~l~~~l~-~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (872)
.++++.++ ..+++.++.+|..|++|++..+-.. ......-++.+.+.+. ..+..+|..|++++..++...+
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld------~~~a~~~l~l~~~~~~--~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLD------KELAKEHLPLFLQALQ--KDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC------hHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHcC
Confidence 36776665 6788889999999999999776532 3334555566666665 3488999999999998876433
Q ss_pred -hhccChh------hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 002876 209 -ANFSNDM------ERDYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (872)
Q Consensus 209 -~~~~~~~------~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 249 (872)
..+.... ....+++.+...+.+.+++++..+++.+.+++-.
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 2222211 1246888888888888999999999999998764
No 168
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=96.67 E-value=0.18 Score=53.77 Aligned_cols=216 Identities=12% Similarity=0.116 Sum_probs=125.1
Q ss_pred ccchHhHHHHHHHHHHHHHcCCcchhchHH-HHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhc
Q 002876 341 GAWNIAMAGGTCLGLVARTVGDDIVPLVMP-FVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALM 419 (872)
Q Consensus 341 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~ 419 (872)
..+..|..|+.+|+.+...++......+.. .+..+++++.-..|..+.+.+...+.........+..+.+.+.+...|
T Consensus 99 ~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L- 177 (441)
T PF12054_consen 99 VVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL- 177 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH-
Confidence 346789999999999999998777666665 688899998888999999999988876532221111344555666666
Q ss_pred cCCc-----------HHHHHHHHHHHHHhhhhcc--C-------------CCCCCcccCccchHHH----HHHHHHhccC
Q 002876 420 QDPN-----------NHVKDTTAWTLGRMFEFLH--G-------------STLETPIINQGNCQQI----ISVLLQSMKD 469 (872)
Q Consensus 420 ~d~~-----------~~vr~~a~~~l~~l~~~~~--~-------------~~~~~~~~~~~~~~~i----l~~l~~~l~d 469 (872)
+++. .++|..+...+..+..... . +...+..+.-+....+ ++.+.+.+..
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~ 257 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSP 257 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5322 3566666666665555322 0 0000011111222222 2333333332
Q ss_pred ChhH---------HHHHHHHHHHHHHhcccCC-----------CCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHH
Q 002876 470 VPNV---------AEKACGALYFLAQGFEDAI-----------SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYE 529 (872)
Q Consensus 470 ~~~v---------~~~a~~al~~l~~~~~~~~-----------~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~ 529 (872)
..++ |.+...++..+-....... ..-..+-+-+.+++..|+..++..+ +..++..+..
T Consensus 258 ~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~Ee--n~~LQ~rsA~ 335 (441)
T PF12054_consen 258 SQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKREE--NELLQQRSAE 335 (441)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhccc--cHHHHHHHHH
Confidence 1111 1112122221111000000 0013344556778888888888777 6789999999
Q ss_pred HHHHHHHccccCcHHHHHHHHHHHHHHHHH
Q 002876 530 TLNEVVRCSTDETAPMVMQLVPLIMMELHQ 559 (872)
Q Consensus 530 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 559 (872)
++..+++.+......-.++++..++..++.
T Consensus 336 slA~Li~~~~~rkp~PndKIvkNLc~flC~ 365 (441)
T PF12054_consen 336 SLARLIQLCVDRKPCPNDKIVKNLCTFLCV 365 (441)
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHhhhhcc
Confidence 999999988765555567888888877744
No 169
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.63 E-value=0.02 Score=51.81 Aligned_cols=142 Identities=17% Similarity=0.170 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHhhcCC---CCchhHHHHH-----------H-HhhcCCChhHHHHHHHHHHHhhhhccccccc---
Q 002876 107 DARSTASQVVAKVAGIELPH---KQWPELIGAL-----------L-SNIHQLPPHTKQATLETLGYICEEVSSDAVE--- 168 (872)
Q Consensus 107 ~vr~~~a~~l~~i~~~~~~~---~~~~~l~~~l-----------~-~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~--- 168 (872)
+||..+..++..+++...+. ..|+.++|.- + -.+.|+++.+|.+|+.++..+.+... ..+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk-~~L~~Ae 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSK-PFLAQAE 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccH-HHHHHHH
Confidence 47999999999999983232 4788888764 2 33456788999999999998887641 1110
Q ss_pred ---------h-------hhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCC
Q 002876 169 ---------Q-------DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPE 232 (872)
Q Consensus 169 ---------~-------~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 232 (872)
. ..+.++-..+...+.. +.+..+....++|+..++...|-.--..+....++..+...+.+.|
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~-E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQA-EKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 1 1223333455556654 6677888899999999887544222222333556666777777899
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 002876 233 VKIRQAAFECLVAISSTY 250 (872)
Q Consensus 233 ~~~r~~~~~~l~~l~~~~ 250 (872)
.+++..++.|+..++...
T Consensus 159 ~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 999999999999888754
No 170
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=96.60 E-value=0.92 Score=45.38 Aligned_cols=237 Identities=10% Similarity=0.120 Sum_probs=123.8
Q ss_pred CChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCch
Q 002876 51 KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWP 130 (872)
Q Consensus 51 ~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~ 130 (872)
.....+++|++++-++++ .|+.+..+.. ++=+.++.+.+..||.+|..-+-.++..+ ..+
T Consensus 36 ~~~k~k~lasq~ip~~fk------------~fp~la~~a~----da~~d~~ed~d~~ir~qaik~lp~fc~~d----~~~ 95 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFK------------HFPSLADEAI----DAQLDLCEDDDVGIRRQAIKGLPLFCKGD----ALS 95 (460)
T ss_pred cchHHHHHHHHHHHHHHh------------hCchhhhHHH----HhhhccccccchhhHHHHHhccchhccCc----hhh
Confidence 357889999999988775 4555555544 35667788889999999999888888754 233
Q ss_pred hHHHHHHHhhcC------------CChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHH
Q 002876 131 ELIGALLSNIHQ------------LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATR 198 (872)
Q Consensus 131 ~l~~~l~~~l~~------------~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~ 198 (872)
-..+.+.++++. .++.+|+-++..+..=+-.+.++.+.++.-..+++.+...|. |-..+--..-+.
T Consensus 96 rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~--dVtgeef~lfm~ 173 (460)
T KOG2213|consen 96 RVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALE--DVTGEEFTLFMD 173 (460)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHH--hccHHHHHHHHH
Confidence 333333333321 256677777766654333333555533333445666666666 555444344444
Q ss_pred HHHHhHhhchhhccChhhHHHHHHHH---HHh--hcCCCHHHHHHHHHHHHHHHHHhHH-----hhHhhHH-HHHHHHHH
Q 002876 199 ALYNALGFAQANFSNDMERDYIMRVV---CEA--TLSPEVKIRQAAFECLVAISSTYYE-----KLAPYIQ-DIFNITAK 267 (872)
Q Consensus 199 ~l~~~~~~~~~~~~~~~~~~~il~~l---~~~--~~~~~~~~r~~~~~~l~~l~~~~~~-----~~~~~~~-~l~~~~~~ 267 (872)
.|+++-..-. -........+.+.. ..+ ..-.|++.....+.|+...+-.+.. .+..|+. .+++.
T Consensus 174 ~L~~lk~~~~--k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~--- 248 (460)
T KOG2213|consen 174 ILASLKSLQT--KAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH--- 248 (460)
T ss_pred HHHhhhcccC--CCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc---
Confidence 4444221110 00111111122221 111 3345677777777777664433321 1222222 23332
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcc
Q 002876 268 AVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQ 332 (872)
Q Consensus 268 ~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 332 (872)
.+.-..++.+ ++++..+++..+.. -..-..+.++.++..|...|...
T Consensus 249 ~fdkl~e~rk---L~lLK~lAEMss~t---------------taq~a~q~Lpsi~elLk~yMpa~ 295 (460)
T KOG2213|consen 249 HFDKLTEERK---LDLLKALAEMSSYT---------------TAQAARQMLPSIVELLKEYMPAP 295 (460)
T ss_pred ccccchHHHH---HHHHHHHHHhCccc---------------hHHHHHHHHHHHHHHHHHhcccC
Confidence 0111123333 45555566543211 11345777888888888887654
No 171
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=0.59 Score=50.51 Aligned_cols=195 Identities=13% Similarity=0.055 Sum_probs=115.6
Q ss_pred HHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCCh
Q 002876 195 AATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEE 274 (872)
Q Consensus 195 ~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 274 (872)
..++.+..++..++..-...+..+.++..+.....+++-.||..++..+..+.....+.=....+.+...+...+.|..+
T Consensus 61 RIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep 140 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP 140 (892)
T ss_pred HHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc
Confidence 34555555555554322222233567777777788889999999999999988854443334456677777777889999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHH
Q 002876 275 PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLG 354 (872)
Q Consensus 275 ~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~ 354 (872)
.||.+|+-++..+.+.. ++... .++..+...+.+. ..-.+|.+|..++.
T Consensus 141 ~VRiqAv~aLsrlQ~d~------------~dee~-----------~v~n~l~~liqnD--------pS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 141 NVRIQAVLALSRLQGDP------------KDEEC-----------PVVNLLKDLIQND--------PSDEVRRAALSNIS 189 (892)
T ss_pred hHHHHHHHHHHHHhcCC------------CCCcc-----------cHHHHHHHHHhcC--------CcHHHHHHHHHhhc
Confidence 99999998887776411 11111 1233344444431 12367877655542
Q ss_pred HHHHHcCCcchhchHHHHHhhhcCcchhhhHHHH-HHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Q 002876 355 LVARTVGDDIVPLVMPFVEENITKQEWRQREAAT-YAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWT 433 (872)
Q Consensus 355 ~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal-~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~ 433 (872)
. . +...|++.+...|-+-..|..++ .++-.+ ... . -.+..-+..+..++ +|-+..|+.++...
T Consensus 190 v-----d----nsTlp~IveRarDV~~anRrlvY~r~lpki-d~r---~--lsi~krv~LlewgL-nDRe~sVk~A~~d~ 253 (892)
T KOG2025|consen 190 V-----D----NSTLPCIVERARDVSGANRRLVYERCLPKI-DLR---S--LSIDKRVLLLEWGL-NDREFSVKGALVDA 253 (892)
T ss_pred c-----C----cccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhh---h--hhHHHHHHHHHHhh-hhhhhHHHHHHHHH
Confidence 1 1 23445566666665555555444 222222 111 1 11244556677788 99999999988777
Q ss_pred HHH
Q 002876 434 LGR 436 (872)
Q Consensus 434 l~~ 436 (872)
+-.
T Consensus 254 il~ 256 (892)
T KOG2025|consen 254 ILS 256 (892)
T ss_pred HHH
Confidence 653
No 172
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.034 Score=54.95 Aligned_cols=163 Identities=16% Similarity=0.133 Sum_probs=103.4
Q ss_pred cchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCcc-ch
Q 002876 379 QEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG-NC 456 (872)
Q Consensus 379 ~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~ 456 (872)
.+...++.|+.-|..+++... .-...+ -..+..++..+ ++.++.+|+.|++++|......|. .+.. +-
T Consensus 95 ~~le~ke~ald~Le~lve~iD--nAndl~~~ggl~~ll~~l-~~~~~~lR~~Aa~Vigt~~qNNP~-------~Qe~v~E 164 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDID--NANDLISLGGLVPLLGYL-ENSDAELRELAARVIGTAVQNNPK-------SQEQVIE 164 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhh--hHHhHhhccCHHHHHHHh-cCCcHHHHHHHHHHHHHHHhcCHH-------HHHHHHH
Confidence 457788999988888887652 111222 22334455588 999999999999999999998751 2211 11
Q ss_pred HHHHHHHHHhcc-C-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHH-HHHHHHHHhhccCCchhhhhHHHHHHHHHH
Q 002876 457 QQIISVLLQSMK-D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ-EIVQALLTVTHREDAGESRLRTAAYETLNE 533 (872)
Q Consensus 457 ~~il~~l~~~l~-d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~-~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~ 533 (872)
...++.|+..+. + +..+|..|..|++.++++..+. ...++. .=+..|...+++.+. +.+++..++..+..
T Consensus 165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g------~~~fl~~~G~~~L~~vl~~~~~-~~~lkrK~~~Ll~~ 237 (342)
T KOG2160|consen 165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG------QDEFLKLNGYQVLRDVLQSNNT-SVKLKRKALFLLSL 237 (342)
T ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH------HHHHHhcCCHHHHHHHHHcCCc-chHHHHHHHHHHHH
Confidence 224555666655 3 5688999999999999986432 222211 125666777776533 56777788888888
Q ss_pred HHHccccCcHHHHHHHHHHHHHHHH
Q 002876 534 VVRCSTDETAPMVMQLVPLIMMELH 558 (872)
Q Consensus 534 l~~~~~~~~~~~~~~l~~~l~~~l~ 558 (872)
++..........-...++..+..+.
T Consensus 238 Ll~~~~s~~d~~~~~~f~~~~~~l~ 262 (342)
T KOG2160|consen 238 LLQEDKSDEDIASSLGFQRVLENLI 262 (342)
T ss_pred HHHhhhhhhhHHHHhhhhHHHHHHh
Confidence 8877654333333344455444443
No 173
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.54 E-value=2 Score=48.39 Aligned_cols=110 Identities=12% Similarity=0.171 Sum_probs=71.9
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHH
Q 002876 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE 252 (872)
Q Consensus 173 ~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 252 (872)
..++-.+...++. |....++.+|++.+.+...+.... ..++..+-++..+.+++-..+|+.++..|..+....|.
T Consensus 575 ~~V~~mi~Rr~~~-d~k~~v~k~a~~~l~S~l~~cD~~----~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr 649 (1529)
T KOG0413|consen 575 KDVVYMIVRRLST-DDKAPVKKAACSLLKSYLSYCDEA----SKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPR 649 (1529)
T ss_pred HHHHHHHHHHhcc-CCCcccchhhHHHHHHHHhccchh----hcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCch
Confidence 3455666666664 556689999999998876543211 11234466777778888899999999999998887765
Q ss_pred hhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 002876 253 KLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVC 288 (872)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~ 288 (872)
.+ ..-...+..+...+.+.+..+...|++++..+.
T Consensus 650 ~~-~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 650 LF-SLSSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred hh-hhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 44 111233444445556666667777777655544
No 174
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.054 Score=52.10 Aligned_cols=189 Identities=16% Similarity=0.184 Sum_probs=124.1
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchH
Q 002876 650 FYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFE 729 (872)
Q Consensus 650 i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~ 729 (872)
.+...+..|. .++|.....++..+..++..-++.+.+.+..++-.+++.+.+. ...|-.+++.++++|...+++.+.
T Consensus 89 al~~~l~~L~-s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNl--RS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLS-SDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNL--RSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHhc-hHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445565 4688999999999999988888888888888888999999888 567888999999999999988776
Q ss_pred HhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCH
Q 002876 730 KYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDD 809 (872)
Q Consensus 730 ~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 809 (872)
.-++..+-.|. .+.+ .| . .-+|+.+-.++..++.... +. .+++.+...+.. .+.
T Consensus 166 ~~ld~lv~~Ll----~ka~---~d---n---rFvreda~kAL~aMV~~vt----p~-------~~L~~L~~~~~~--~n~ 219 (334)
T KOG2933|consen 166 QELDDLVTQLL----HKAS---QD---N---RFVREDAEKALVAMVNHVT----PQ-------KLLRKLIPILQH--SNP 219 (334)
T ss_pred HHHHHHHHHHH----hhhc---cc---c---hHHHHHHHHHHHHHHhccC----hH-------HHHHHHHHHHhh--hch
Confidence 65554444443 2211 01 1 2356667777777766522 21 344445444443 467
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHH---hcCCChhHHHHHHHHHHHHHHHhc
Q 002876 810 VVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNEC---LSSDDHMIKESAEWAKLAISKAIS 871 (872)
Q Consensus 810 ~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 871 (872)
.+|..+..++......+| ..+...+ .+..+...+ ..+..+..++.|...+.+.+.++.
T Consensus 220 r~r~~a~~~~~~~v~rl~--v~~~~~~--~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~~ 280 (334)
T KOG2933|consen 220 RVRAKAALCFSRCVIRLG--VLPVLLQ--GSCDLSRAAQEQGSDKLPELREAARFVRLELKEVLK 280 (334)
T ss_pred hhhhhhhccccccceecc--ccchhhH--hHHHHHHHHHhhhcccccccccchhHHHHhHHHHHH
Confidence 788888888777777776 2222222 233333333 344567777778888877776653
No 175
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.52 E-value=0.04 Score=45.33 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=73.3
Q ss_pred hhHhHHHHHHHHHHHHhc----cccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002876 602 FMQYADQMMGLFLRVFAI----RSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDL 677 (872)
Q Consensus 602 ~~~~~~~i~~~l~~~l~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l 677 (872)
+.+++-.++..+-..+.+ .+...+..++.+++.+.+..|+....+.++++-.|...++.+ +.+..++.++..+
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~---~l~~~al~~W~~f 81 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP---ELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh---hhHHHHHHHHHHH
Confidence 334444555555555555 234468899999999999888888888899888888888644 7899999999999
Q ss_pred HHHHh-ccccccHHHHHHHHHHHc
Q 002876 678 CRALE-DKILPYCDGIMTQLLKDL 700 (872)
Q Consensus 678 ~~~~~-~~~~~~~~~i~~~l~~~l 700 (872)
++.++ +++.|++++++-.++..+
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHhc
Confidence 99986 567788888777776654
No 176
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.51 E-value=0.22 Score=50.50 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccch-
Q 002876 91 AQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQ- 169 (872)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~- 169 (872)
..+...++.++.++++.+|..+-.+++.++-.+. ..=.+.++.+.+.++.+++.++..|++++..+.-..+.+.+..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 4455566699999999999999999999998762 2335667777777766688999999999988877664444422
Q ss_pred ------hhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHh
Q 002876 170 ------DHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (872)
Q Consensus 170 ------~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (872)
.....+...+...+. +.++++|..|++.+..++-
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLD--SENPELQAIAVEGLCKLLL 143 (298)
T ss_pred hccCccchHhHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHh
Confidence 234678888888888 5688999999999999763
No 177
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.48 E-value=0.068 Score=47.87 Aligned_cols=150 Identities=17% Similarity=0.211 Sum_probs=91.8
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhcc
Q 002876 647 MPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE 726 (872)
Q Consensus 647 ~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~ 726 (872)
.+.+++.+.+.++++.++.+|..++.++|.+. .+.||-.+.+..-...-...+.+.......+ .......
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-----ALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~ 77 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILG-----ALDPYKHKSIQKSLDSKSSENSNDESTDISL-----PMMGISP 77 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-----ccCcHHHhcccccCCccccccccccchhhHH-----hhccCCC
Confidence 36799999999988878999999999999874 3556655422221110000000111111111 1112222
Q ss_pred chHHhHH-HHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCC
Q 002876 727 NFEKYLM-YAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEK 805 (872)
Q Consensus 727 ~~~~~l~-~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~ 805 (872)
....|.+ .++..|...+++. ....-+..+++++..++..++ ....||++++++.+...+..
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~------------sLs~~h~~vv~ai~~If~~l~-----~~cv~~L~~viP~~l~~i~~- 139 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDP------------SLSSHHTAVVQAIMYIFKSLG-----LKCVPYLPQVIPIFLRVIRT- 139 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHhcC-----cCchhHHHHHhHHHHHHHHh-
Confidence 3444444 4577777777654 122334467777777776533 23479999999999999885
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 002876 806 DMDDVVTKTAIGVLGDLADT 825 (872)
Q Consensus 806 ~~~~~v~~~a~~~l~~i~~~ 825 (872)
.+.+.++..+.-++.+...
T Consensus 140 -~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 140 -CPDSLREFYFQQLADLVSI 158 (160)
T ss_pred -CCHHHHHHHHHHHHHHHHH
Confidence 4559999999888888764
No 178
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.42 E-value=0.077 Score=53.06 Aligned_cols=176 Identities=16% Similarity=0.218 Sum_probs=113.2
Q ss_pred cchhhhHHHH-HHHHHhhC-CCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccch
Q 002876 379 QEWRQREAAT-YAFGSILE-GPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC 456 (872)
Q Consensus 379 ~~~~~r~aal-~~l~~l~~-~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 456 (872)
+.|+...+.. ..+..++. ......+..+.+-++|.++..+ .|.++.+|..++.++..+....+... ..........
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~-~~~L~~tGl~ 164 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAE-WDILRRTGLF 164 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhh-hHHHHHcChH
Confidence 4476554222 33333333 4445677888899999999999 99999999999999999999875321 0000122233
Q ss_pred HHHHHHHHHhcc--------C-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHH-HHHHHhhccCCc-hhhhhHH
Q 002876 457 QQIISVLLQSMK--------D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIV-QALLTVTHREDA-GESRLRT 525 (872)
Q Consensus 457 ~~il~~l~~~l~--------d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~-~~l~~~l~~~~~-~~~~v~~ 525 (872)
+-+.+.+...+. + ...+-..+..++..++...... ....-...+..++ +.++..+..... ..+.++.
T Consensus 165 ~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~--~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~ 242 (282)
T PF10521_consen 165 SVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQEND--DSNPRSTWLDKILREGILSSMEHESSFSYPRLRT 242 (282)
T ss_pred HHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccC--CcccchHHHHHHHHHHHhhhceeccccCchhHHH
Confidence 344444555543 2 3567777888888887653211 1222233344444 436666544330 1377888
Q ss_pred HHHHHHHHHHHccccCcHHHHHHHHHHHHHHHH
Q 002876 526 AAYETLNEVVRCSTDETAPMVMQLVPLIMMELH 558 (872)
Q Consensus 526 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 558 (872)
..++.+..+++..|.....++..+++.+.+.+.
T Consensus 243 ~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~ 275 (282)
T PF10521_consen 243 VLLQQLPPIIDELGISSVKHLQRIIPVLSQILE 275 (282)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 899999999999999888899988888887654
No 179
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=0.22 Score=56.03 Aligned_cols=197 Identities=20% Similarity=0.230 Sum_probs=135.0
Q ss_pred HhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHH
Q 002876 31 QEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARS 110 (872)
Q Consensus 31 ~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~ 110 (872)
....||+=++..++.|.+ .--|.-|+.+|.++++- ..|- .+-..--.|.+-++++|+++..++|.
T Consensus 466 e~r~PPeQLPiVLQVLLS----QvHRlRAL~LL~RFLDl----------GpWA-V~LaLsVGIFPYVLKLLQS~a~ELrp 530 (1387)
T KOG1517|consen 466 ESRTPPEQLPIVLQVLLS----QVHRLRALVLLARFLDL----------GPWA-VDLALSVGIFPYVLKLLQSSARELRP 530 (1387)
T ss_pred ccCCChHhcchHHHHHHH----HHHHHHHHHHHHHHhcc----------chhh-hhhhhccchHHHHHHHhccchHhhhh
Confidence 334788888888898886 35677899999999973 2342 22233346777899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHH-----HHHhhcC-C--ChhHHHHHHHHHHHhhhhccccccchh--hHHHHHHHHH
Q 002876 111 TASQVVAKVAGIELPHKQWPELIGA-----LLSNIHQ-L--PPHTKQATLETLGYICEEVSSDAVEQD--HVNKILTAVV 180 (872)
Q Consensus 111 ~~a~~l~~i~~~~~~~~~~~~l~~~-----l~~~l~~-~--~~~~r~~al~~l~~i~~~~~~~~l~~~--~~~~i~~~l~ 180 (872)
.+.-+-++|...+ + ..--+|+.. +++.+.+ + +++.|..|.-+|..|+..+ + +.+. .-..++..++
T Consensus 531 iLVFIWAKILAvD-~-SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf-~--lGQ~acl~~~li~iCl 605 (1387)
T KOG1517|consen 531 ILVFIWAKILAVD-P-SCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF-K--LGQKACLNGNLIGICL 605 (1387)
T ss_pred hHHHHHHHHHhcC-c-hhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc-c--hhHHHhccccHHHHHH
Confidence 9999999998877 4 233344433 2233333 2 4578888999999998875 2 1111 1234566777
Q ss_pred hcccCCCCCHHHHHHHHHHHHHhHhhch-hhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q 002876 181 QGMNASESNNDVRLAATRALYNALGFAQ-ANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 250 (872)
Q Consensus 181 ~~l~~~~~~~~vr~~al~~l~~~~~~~~-~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 250 (872)
..+++ ++.+-+|.-.+-||+.+-+-+. ..+. +.++.-.+.+...+.|+-++||.+|+-+|+.++...
T Consensus 606 e~lnd-~~~pLLrQW~~icLG~LW~d~~~Arw~--G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 606 EHLND-DPEPLLRQWLCICLGRLWEDYDEARWS--GRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHhcC-CccHHHHHHHHHHHHHHhhhcchhhhc--cccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 88883 2468889999999998653211 1111 112334566677788999999999999999999874
No 180
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=2.8 Score=50.15 Aligned_cols=102 Identities=13% Similarity=0.173 Sum_probs=72.4
Q ss_pred CchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccc
Q 002876 709 VKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLM 788 (872)
Q Consensus 709 v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 788 (872)
+-..+..++++++.+.+.+|.|+..++|..-. .+ ....|--++.....++..++ +...
T Consensus 1520 v~~~li~~i~~~~~a~~~d~~pl~~k~l~~tr---ss--------------~~~~r~~ai~~~~~l~~~lg-----e~~~ 1577 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKDDLKPLNQKILKKTR---SS--------------SRKARYLAIIQVKLLYTKLG-----ENVI 1577 (1621)
T ss_pred HHHHHHHHHHhhccCChhhhHHHHHHHHHHhc---cc--------------cHHHHHHHHHHHHHHHHHhc-----chhH
Confidence 44556677777777777666666555433222 11 13455566777777777644 4577
Q ss_pred cchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccc
Q 002876 789 PYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLI 834 (872)
Q Consensus 789 ~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~ 834 (872)
+.+++++|++.++++| .++++...+-.++..+-..+|+.+..|+
T Consensus 1578 ~lL~q~iPfLaEL~ED--~~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1578 VLLPQSIPFLAELMED--EDDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred HhhhhhhHHHHHHHhh--hHHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 8899999999999996 6889999999999999999999877653
No 181
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.28 E-value=0.073 Score=43.37 Aligned_cols=96 Identities=16% Similarity=0.248 Sum_probs=70.8
Q ss_pred hhHhHHHHHHHHHHHHhccc--c--chhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002876 602 FMQYADQMMGLFLRVFAIRS--A--TAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDL 677 (872)
Q Consensus 602 ~~~~~~~i~~~l~~~l~~~~--~--~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l 677 (872)
+.+++-.++..+-..+.+.+ . ..+..++.+++.+.+..|+....+.++++-.|...++.+ +.+..++.++..+
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~---eL~~~al~~W~~~ 81 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP---ELRSLALRCWHVL 81 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHH
Confidence 33444455566656665543 2 247889999999999999888899999999888888743 6899999999999
Q ss_pred HHHHh-ccccccHHHHHHHHHHHc
Q 002876 678 CRALE-DKILPYCDGIMTQLLKDL 700 (872)
Q Consensus 678 ~~~~~-~~~~~~~~~i~~~l~~~l 700 (872)
++.++ +++.|.+++++..++..+
T Consensus 82 i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 82 IKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhc
Confidence 99986 445566666665555443
No 182
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.13 Score=55.01 Aligned_cols=152 Identities=14% Similarity=0.169 Sum_probs=109.4
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCC-------CchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccc
Q 002876 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK-------QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS 164 (872)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~-------~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~ 164 (872)
..++.+.+.|.-+|..||..|+.++-.++...-|.. ....-+..+..++.++-+.+|-.|...+..+...+ -
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f-W 252 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF-W 252 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-H
Confidence 456778889999999999999999988876554411 11234556778889998999988887777666554 4
Q ss_pred cccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 002876 165 DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLV 244 (872)
Q Consensus 165 ~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~ 244 (872)
+.++...+..++..+..-+.. |...+||.+..+.+..++.. | ........+++.+-..++|....+|.++.+.+.
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~-dt~s~VR~svf~gl~~~l~n-p---~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAF-DTSSDVRCSVFKGLPMILDN-P---LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhh-ccchheehhHhcCcHHHHcC-c---cchhHHHHHHHhcchhhhccchhHHHHHHHHHH
Confidence 445445566677777766665 77789999999999886531 1 111123467777777888999999999999988
Q ss_pred HHHHH
Q 002876 245 AISST 249 (872)
Q Consensus 245 ~l~~~ 249 (872)
.+=..
T Consensus 328 ~ik~v 332 (1005)
T KOG1949|consen 328 KIKAV 332 (1005)
T ss_pred HHHhh
Confidence 76544
No 183
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=96.22 E-value=0.39 Score=48.97 Aligned_cols=166 Identities=11% Similarity=0.197 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhH
Q 002876 522 RLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYV 601 (872)
Q Consensus 522 ~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 601 (872)
.+|+..+..+.+.++..++. ......++|++++......... .++-++ ...+.+++.++.+++..
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~v~~~~i~~l~~~vL~DY~~~--~p~~r~------~evL~l~~~ii~kl~~~------ 106 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EEVANNFIPPLLDAVLGDYQNS--VPDARE------PEVLSLMATIINKLGEL------ 106 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HHHHHHTHHHHHHHHHHHHHHS---GGGS-------HHHHHHHHHHHHHHGGG------
T ss_pred HHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHhcC--CccccC------hhHHHHHHHHHHHHHHh------
Confidence 45667778888888877632 2244566666666433222110 012222 12677888888888875
Q ss_pred hhHhHHHHHHHHHH----HHhcc---ccchhhHHHHHHHHHHHHhhhhhHh----hhHHHHHHHHhhhcCCChhhHHHHH
Q 002876 602 FMQYADQMMGLFLR----VFAIR---SATAHEEAMLAIGALAYATGQDFLK----YMPEFYKYVEMGLQNFEDYQVCAIT 670 (872)
Q Consensus 602 ~~~~~~~i~~~l~~----~l~~~---~~~~~~~a~~~l~~l~~~~~~~~~~----~~~~i~~~l~~~l~~~~~~~v~~~a 670 (872)
+.++.+.+++.+++ +++.. .++.|..-+..+..+...+-..+.. .+..++..+..++++. +.++...+
T Consensus 107 ~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~-~~~I~~~~ 185 (319)
T PF08767_consen 107 IQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT-NREISETG 185 (319)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS-SHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 55566666555544 44432 4568889999999999887655443 3556788888888854 55899999
Q ss_pred HHHHHHHHHHHhc---c-----ccccHHHHHHHHHHHccCC
Q 002876 671 VGVVGDLCRALED---K-----ILPYCDGIMTQLLKDLSSN 703 (872)
Q Consensus 671 ~~~l~~l~~~~~~---~-----~~~~~~~i~~~l~~~l~~~ 703 (872)
+.++..+...+.. + ...|.-.++..++..+.++
T Consensus 186 L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 186 LNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp HHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 9999999888764 1 1123445555556665555
No 184
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.12 Score=51.16 Aligned_cols=158 Identities=10% Similarity=-0.016 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH-HHHHHHHhhh
Q 002876 580 LLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP-EFYKYVEMGL 658 (872)
Q Consensus 580 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l 658 (872)
.++.-|..++..+.... . +- --..+..++..+++.+..+|+.|...+|.++..-+..-...++ ..++.|+..+
T Consensus 102 ~ald~Le~lve~iDnAn---d-l~--~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 102 DALDNLEELVEDIDNAN---D-LI--SLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHhhhhHH---h-Hh--hccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 35666666666554320 0 00 0123344455889999999999999999999887754444443 2778888888
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhccccccHH-HHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHH
Q 002876 659 QNFEDYQVCAITVGVVGDLCRALEDKILPYCD-GIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMP 737 (872)
Q Consensus 659 ~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~ 737 (872)
..+.+..+|..|+.+++.++++.+.....+.. .=...|...+++++.+...+.-++..++.+......+-...-+..++
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 76666688999999999999987643333221 11556777788764455666778888888887654443322333344
Q ss_pred HHHHHH
Q 002876 738 MLQSAA 743 (872)
Q Consensus 738 ~l~~~l 743 (872)
.....+
T Consensus 256 ~~~~~l 261 (342)
T KOG2160|consen 256 RVLENL 261 (342)
T ss_pred HHHHHH
Confidence 444443
No 185
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.20 E-value=0.12 Score=55.75 Aligned_cols=189 Identities=18% Similarity=0.198 Sum_probs=125.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHh
Q 002876 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE 297 (872)
Q Consensus 218 ~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~ 297 (872)
..+++.+.++...++..+|...++-+-..+....+. ..-.++++.+...+.|.++.+|..++.++..++..-.
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~--~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~----- 401 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ--ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS----- 401 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH--hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc-----
Confidence 468889999999999999998888887766654431 1224789999999999999999999999888875321
Q ss_pred cCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchh-chHHHHHhhh
Q 002876 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVP-LVMPFVEENI 376 (872)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~~l~~~~ 376 (872)
+.. +-.-++..+.+...|++ -..|-....|++.++......... .+.......+
T Consensus 402 -----------------~~~---Ln~Ellr~~ar~q~d~~-----~~irtntticlgki~~~l~~~~R~~vL~~aftral 456 (690)
T KOG1243|consen 402 -----------------KRN---LNGELLRYLARLQPDEH-----GGIRTNTTICLGKIAPHLAASVRKRVLASAFTRAL 456 (690)
T ss_pred -----------------hhh---hcHHHHHHHHhhCcccc-----Ccccccceeeecccccccchhhhccccchhhhhhh
Confidence 111 11223333333222222 133444456776666554221111 1222333456
Q ss_pred cCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 002876 377 TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (872)
Q Consensus 377 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
.|+-...|.+++.++.+..+... ....-..++|.+.... -|++..||..|..++..+.+...
T Consensus 457 kdpf~paR~a~v~~l~at~~~~~---~~~va~kIlp~l~pl~-vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 457 KDPFVPARKAGVLALAATQEYFD---QSEVANKILPSLVPLT-VDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred cCCCCCchhhhhHHHhhcccccc---hhhhhhhccccccccc-cCcccchhhHHHHHHHHHHhhhh
Confidence 67777889999999988777653 2333466778888777 89999999999999988887664
No 186
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=96.20 E-value=1.8 Score=44.25 Aligned_cols=145 Identities=10% Similarity=0.104 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhh-HHHHHHHHHHHHhhhhhHhhhHHHHHHHH
Q 002876 577 IQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHE-EAMLAIGALAYATGQDFLKYMPEFYKYVE 655 (872)
Q Consensus 577 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~-~a~~~l~~l~~~~~~~~~~~~~~i~~~l~ 655 (872)
++..++..+..++..... ...+...+++++++.++.-.+...+..|+ +++.+++.++..++..+.++++.++..+.
T Consensus 43 iKkeIL~Li~t~i~~~~~---~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAED---PEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S----HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 444566666666665442 22334566777777776666666666664 68889999999999988888877766655
Q ss_pred hh----hcC--CChhhHHHHHHHHHHHHHHHHhccccc----cHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhc
Q 002876 656 MG----LQN--FEDYQVCAITVGVVGDLCRALEDKILP----YCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG 725 (872)
Q Consensus 656 ~~----l~~--~~~~~v~~~a~~~l~~l~~~~~~~~~~----~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~ 725 (872)
.. +.+ .+-|+.|..-+.++..+.+.+.+.+.. ....+++.+...++.+ ++++...++.++..+.....
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~--~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT--NREISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHH
Confidence 43 322 123789999999999999987544432 3456778888888887 78888999999999988765
Q ss_pred c
Q 002876 726 E 726 (872)
Q Consensus 726 ~ 726 (872)
.
T Consensus 198 ~ 198 (319)
T PF08767_consen 198 K 198 (319)
T ss_dssp H
T ss_pred h
Confidence 4
No 187
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.087 Score=50.75 Aligned_cols=144 Identities=18% Similarity=0.290 Sum_probs=105.8
Q ss_pred HHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCccc
Q 002876 372 VEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPII 451 (872)
Q Consensus 372 l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 451 (872)
....+.+.+|...-.++..+..++..- ++.+.+.+..++-.+...+ +++...|-.+|+.+++.+...+.. .
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~L~~vii~vvksl-KNlRS~VsraA~~t~~difs~ln~-------~ 163 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPMLHEVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNN-------S 163 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 335567889999999999999888876 3777777888888889999 999999999999999999997742 1
Q ss_pred CccchHHHHHHHHHhc-cCChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHH
Q 002876 452 NQGNCQQIISVLLQSM-KDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530 (872)
Q Consensus 452 ~~~~~~~il~~l~~~l-~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~ 530 (872)
..+.++..+..|+..- +|+--|++.|-.+|..++....+ ..+++.|..++++. ++.++..+..+
T Consensus 164 i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------------~~~L~~L~~~~~~~---n~r~r~~a~~~ 228 (334)
T KOG2933|consen 164 IDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------------QKLLRKLIPILQHS---NPRVRAKAALC 228 (334)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------------HHHHHHHHHHHhhh---chhhhhhhhcc
Confidence 2234445554444333 35778999999999999876532 25666677776665 46777777777
Q ss_pred HHHHHHccc
Q 002876 531 LNEVVRCST 539 (872)
Q Consensus 531 l~~l~~~~~ 539 (872)
+...+...+
T Consensus 229 ~~~~v~rl~ 237 (334)
T KOG2933|consen 229 FSRCVIRLG 237 (334)
T ss_pred ccccceecc
Confidence 666666655
No 188
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.07 E-value=2 Score=45.10 Aligned_cols=268 Identities=11% Similarity=0.028 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHhhhhhHhhh--HHHHHHHHh
Q 002876 580 LLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR-SATAHEEAMLAIGALAYATGQDFLKYM--PEFYKYVEM 656 (872)
Q Consensus 580 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~ 656 (872)
.++.+++.++..-.... .....+.+++.+...++.. +.....-++.+++.++..-+ +...+ ...++.|..
T Consensus 120 ~a~~iLt~l~~~~~~~~-----~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~--~R~~f~~~~~v~~L~~ 192 (429)
T cd00256 120 MSFSILAKLACFGLAKM-----EGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE--YRFAFVLADGVPTLVK 192 (429)
T ss_pred HHHHHHHHHHhcCcccc-----chhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch--HHHHHHHccCHHHHHH
Confidence 46666666654222110 1123334555566666543 23345556677777764322 11111 124555555
Q ss_pred hhcCCC-hhhHHHH---HHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccc--hHH
Q 002876 657 GLQNFE-DYQVCAI---TVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN--FEK 730 (872)
Q Consensus 657 ~l~~~~-~~~v~~~---a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~--~~~ 730 (872)
.++... +.+.... ++|+++.-..... .+ .. .++++.+.++++... ...+-+-++.++-.+.....+. -..
T Consensus 193 ~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~-~~-~~-~~~i~~l~~i~k~s~-KEKvvRv~l~~l~Nll~~~~~~~~~~~ 268 (429)
T cd00256 193 LLSNATLGFQLQYQSIFCIWLLTFNPHAAE-VL-KR-LSLIQDLSDILKEST-KEKVIRIVLAIFRNLISKRVDREVKKT 268 (429)
T ss_pred HHhhccccHHHHHHHHHHHHHHhccHHHHH-hh-cc-ccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhcccccchhhh
Confidence 555432 3333333 3344433222111 11 11 468888888887764 3345555667777776643111 111
Q ss_pred hHHHH----HHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHH------HhhcccCC------Cc---------cc
Q 002876 731 YLMYA----MPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSG------IFQGFKGS------PK---------TQ 785 (872)
Q Consensus 731 ~l~~i----l~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~------l~~~~~~~------~~---------~~ 785 (872)
+...+ ++.+.+.++.+.- .|+|-.+-...+++..-+.+.. -...+..+ .. ..
T Consensus 269 ~~~~mv~~~l~~~l~~L~~rk~---~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~ 345 (429)
T cd00256 269 AALQMVQCKVLKTLQSLEQRKY---DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENAD 345 (429)
T ss_pred HHHHHHHcChHHHHHHHhcCCC---CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHH
Confidence 21221 2233344444322 2444333222222222221111 11111110 01 11
Q ss_pred ccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC--ccccccCchHHHHHHHHHhcCCChhHHHHHHHHH
Q 002876 786 LLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSN--AGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAK 863 (872)
Q Consensus 786 ~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~--~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~ 863 (872)
.|...--.++..+..++.. +.++.+.-.|+.=+|+.++.++.. ....+. .+..+.++++..|+++|..|..+.
T Consensus 346 kf~~~~~~llk~L~~iL~~-s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg----~K~~vM~Lm~h~d~~Vr~eAL~av 420 (429)
T cd00256 346 RLNEKNYELLKILIHLLET-SVDPIILAVACHDIGEYVRHYPRGKDVVEQLG----GKQRVMRLLNHEDPNVRYEALLAV 420 (429)
T ss_pred HHHhcchHHHHHHHHHHhc-CCCcceeehhhhhHHHHHHHCccHHHHHHHcC----cHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1222223577778888854 456677777788899999988533 222233 567777888888999999887776
Q ss_pred HHH
Q 002876 864 LAI 866 (872)
Q Consensus 864 ~~~ 866 (872)
..|
T Consensus 421 Qkl 423 (429)
T cd00256 421 QKL 423 (429)
T ss_pred HHH
Confidence 654
No 189
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.00 E-value=2.1 Score=46.38 Aligned_cols=131 Identities=12% Similarity=0.128 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCc-ch----HHHHHHHHHHHHHhccC
Q 002876 347 MAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEK-LV----PLVNIALNFMLTALMQD 421 (872)
Q Consensus 347 ~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~-~~----~~~~~i~~~l~~~l~~d 421 (872)
+.....+..++...|+-++.. ...+.+.++++....|-+.+-+.+.+......+. +. ..+..++..+...+ .|
T Consensus 280 k~islFl~kls~l~p~i~lrq-~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl-~D 357 (1128)
T COG5098 280 KDISLFLNKLSELSPGIMLRQ-YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERL-SD 357 (1128)
T ss_pred HHHHHHHHHHhhcCchHHHHH-HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHh-hc
Confidence 344566777777665543322 2334567788889999998888888776553222 33 35677888888999 99
Q ss_pred CcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHh
Q 002876 422 PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (872)
Q Consensus 422 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
.+|.+|..|+..+..++.... ....--..+.......++| +..||.+|...+..+...
T Consensus 358 ~~py~RtKalqv~~kifdl~s--------k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 358 TYPYTRTKALQVLEKIFDLNS--------KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred cchHHHHHHHHHHHHHHhCcc--------cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 999999999999999988542 1223445788888899998 689999999998888654
No 190
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.00 E-value=0.29 Score=50.03 Aligned_cols=230 Identities=14% Similarity=0.118 Sum_probs=116.6
Q ss_pred ccchhhHHHHHHHHHHHHhhh---hhHhhhH----HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHH
Q 002876 621 SATAHEEAMLAIGALAYATGQ---DFLKYMP----EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIM 693 (872)
Q Consensus 621 ~~~~~~~a~~~l~~l~~~~~~---~~~~~~~----~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~ 693 (872)
+.++...++..++.++...+. -|..+.. ..+..+++.+... +..+...++.++..++...+.........++
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l 148 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEKLVKEAL 148 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 445666666666666554431 1111111 1344455566644 6678888889998888776654443334566
Q ss_pred HHHHHHccCCCC--CCCCchhHHHHHHHHHHHh--ccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHH
Q 002876 694 TQLLKDLSSNQL--HRSVKPPIFSCFGDIALAI--GENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILE 769 (872)
Q Consensus 694 ~~l~~~l~~~~~--~~~v~~~~~~~l~~i~~~~--~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~ 769 (872)
+.+++.+.+... +.++...++.+++.+...- ...|.. ...++.+...+...... + ......+.-.++-
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~---~---~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATN---S---NSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhccc---C---CCCchhHHHHHHH
Confidence 666666654211 3356677888998887432 122211 34455555555211000 0 0011233333333
Q ss_pred HHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhc
Q 002876 770 AFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLS 849 (872)
Q Consensus 770 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~ 849 (872)
|+.-+ ++...........+ +++.+..++.+ ...+.+.+.++.++.+++..-...+.+.+-..+ +++++..+..
T Consensus 221 ~lWlL--SF~~~~~~~~~~~~---~i~~L~~i~~~-~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~-~l~~l~~L~~ 293 (312)
T PF03224_consen 221 CLWLL--SFEPEIAEELNKKY---LIPLLADILKD-SIKEKVVRVSLAILRNLLSKAPKSNIELMVLCG-LLKTLQNLSE 293 (312)
T ss_dssp HHHHH--TTSHHHHHHHHTTS---HHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH--HHHHHHHHHS
T ss_pred HHHHH--hcCHHHHHHHhccc---hHHHHHHHHHh-cccchHHHHHHHHHHHHHhccHHHHHHHHHHcc-HHHHHHHHhc
Confidence 32222 11111011112233 77777777776 568899999999999999876554443322221 5566665553
Q ss_pred C--CChhHHHHHHHHHHHH
Q 002876 850 S--DDHMIKESAEWAKLAI 866 (872)
Q Consensus 850 ~--~~~~~~~~~~~~~~~~ 866 (872)
. .||++.+-..+....|
T Consensus 294 rk~~Dedl~edl~~L~e~L 312 (312)
T PF03224_consen 294 RKWSDEDLTEDLEFLKEIL 312 (312)
T ss_dssp S--SSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhC
Confidence 3 7899988888776543
No 191
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.97 E-value=0.38 Score=45.94 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=78.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 002876 227 ATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDS 306 (872)
Q Consensus 227 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 306 (872)
++...+.+.|.+|+.+|.. .+-+.++++.++..+.+.-.. -..-++.+..+......+...
T Consensus 206 l~dEs~~~~r~aAl~sLr~---------dsGlhQLvPYFi~f~~eqit~-Nl~nl~~LtTv~~m~~sLL~N--------- 266 (450)
T COG5095 206 LLDESDEQTRDAALESLRN---------DSGLHQLVPYFIHFFNEQITK-NLKNLEKLTTVVMMYSSLLKN--------- 266 (450)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CccHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhcC---------
Confidence 3445678889999998875 233444455444444321100 000112222222222222111
Q ss_pred CCchHhHHHhhhhhHHHHHHHHHhc--ccCCcccCCccchHhHHHHHHHHHHHHHcCC---cchhchHHHHHhhhcC-c-
Q 002876 307 DIPCFYFIKHALPVLVPLLLETLLK--QEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITK-Q- 379 (872)
Q Consensus 307 ~~~~~~~~~~~l~~l~~~l~~~l~~--~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~~~~-~- 379 (872)
..-|+.+|+.+++|-++.++-. ...++ ++.+-+.+|..|+..++.++..|+. ..-|.+...+.+..-| .
T Consensus 267 ---~~iFvdPY~hqlmPSilTcliakklg~~p-~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k 342 (450)
T COG5095 267 ---KYIFVDPYLHQLMPSILTCLIAKKLGNVP-DDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREK 342 (450)
T ss_pred ---CceeecHHHHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhccc
Confidence 1135566666677666655422 11111 1234468999999999999988864 3345555444433322 2
Q ss_pred chhhhHHHHHHHHHhhCCC
Q 002876 380 EWRQREAATYAFGSILEGP 398 (872)
Q Consensus 380 ~~~~r~aal~~l~~l~~~~ 398 (872)
-....++|+.++..+....
T Consensus 343 ~~sT~YGalkgls~l~ke~ 361 (450)
T COG5095 343 TESTQYGALKGLSILSKEV 361 (450)
T ss_pred ccchhhhhhhhhhhhchhh
Confidence 2566788888888776544
No 192
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.25 Score=52.97 Aligned_cols=204 Identities=9% Similarity=0.130 Sum_probs=126.6
Q ss_pred hhhccCCChHHHHHHHHHHHHhcCC-----CChHHHHHHHHHHHHHHHhhcCCCCchhHH-----HHHHHhhcCCChhHH
Q 002876 79 VQRWLSLDSSVKAQIKSFILKTLSS-----PAHDARSTASQVVAKVAGIELPHKQWPELI-----GALLSNIHQLPPHTK 148 (872)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~-----~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~-----~~l~~~l~~~~~~~r 148 (872)
...|..-+-+.++.|.+..++.+.+ +...+....-.+++.++..---.+.-.+++ |.|+..++..+..+|
T Consensus 112 frAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~Vr 191 (1005)
T KOG1949|consen 112 FRAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVR 191 (1005)
T ss_pred HHHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhh
Confidence 4577777777777777777776543 122344444455555553321112333333 345667778888999
Q ss_pred HHHHHHHHHhhhhccccccchhhHHHH----HHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHH
Q 002876 149 QATLETLGYICEEVSSDAVEQDHVNKI----LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVV 224 (872)
Q Consensus 149 ~~al~~l~~i~~~~~~~~l~~~~~~~i----~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l 224 (872)
..|+.++-.++-..+|+.- ....+.+ +..+...+. |+-+.||..|+.-+...+..+-..+. ......++..+
T Consensus 192 snAa~lf~~~fP~~dpd~~-~e~mD~i~~kQf~~l~~LL~--d~~p~VRS~a~~gv~k~~s~fWe~iP-~~i~~~ll~kI 267 (1005)
T KOG1949|consen 192 SNAALLFVEAFPIRDPDLH-AEEMDSIIQKQFEELYSLLE--DPYPMVRSTAILGVCKITSKFWEMIP-PTILIDLLKKI 267 (1005)
T ss_pred hhHHHHHHHhccCCCCCcc-HHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 9999998877766655542 2333333 335566667 88899999888877765542211111 01112334333
Q ss_pred HH-hhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 002876 225 CE-ATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVC 288 (872)
Q Consensus 225 ~~-~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~ 288 (872)
+. ...+...++|...++++..++.+-.. .+.++.+++.+-..+.|..+.||.++.+.+..+=
T Consensus 268 ~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 268 TDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHhhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 33 34566779999999999988774221 3556778887777888989999998888776654
No 193
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.89 E-value=3.4 Score=44.96 Aligned_cols=300 Identities=13% Similarity=0.060 Sum_probs=145.2
Q ss_pred CHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHH
Q 002876 189 NNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSP-EVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAK 267 (872)
Q Consensus 189 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 267 (872)
+-.-|..|++-+...+..++- .....+......++..+ ..+.|..+++.|..+++..+......-..++..+
T Consensus 3 ~l~~R~~a~~~l~~~i~~~~~-----~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I-- 75 (464)
T PF11864_consen 3 PLSERIKAAEELCESIQKYPL-----SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDI-- 75 (464)
T ss_pred CHHHHHHHHHHHHHHHHhCCc-----hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH--
Confidence 456788888888887654432 11234555555555433 5679999999999999976652222112223322
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhccc--------------
Q 002876 268 AVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQE-------------- 333 (872)
Q Consensus 268 ~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~-------------- 333 (872)
.....++....-++.+..+.+.+.++. .+...+.|.+..+|...-
T Consensus 76 -~~~~~~~d~~~~l~aL~~LT~~Grdi~--------------------~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~ 134 (464)
T PF11864_consen 76 -SDPSNDDDFDLRLEALIALTDNGRDID--------------------FFEYEIGPFLLSWLEPSYQAARSARRKAKKSS 134 (464)
T ss_pred -hcCCCchhHHHHHHHHHHHHcCCcCch--------------------hcccchHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 112222223344455555665332221 111223333333332100
Q ss_pred CCcccCCccc-hHhHHHHHHHHHHHHHc-------CCcchhchHHHHHhhhcC-cchhhhHHHHHHHHHhhCCCCCCcch
Q 002876 334 EDQDQDEGAW-NIAMAGGTCLGLVARTV-------GDDIVPLVMPFVEENITK-QEWRQREAATYAFGSILEGPSPEKLV 404 (872)
Q Consensus 334 ~d~~~~~~~~-~~r~~a~~~l~~l~~~~-------~~~~~~~l~~~l~~~~~~-~~~~~r~aal~~l~~l~~~~~~~~~~ 404 (872)
.........- .--....+.+.-+.... .+..+..++..+...+.. .+...-++++..|.++.... ....
T Consensus 135 ~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~--~iP~ 212 (464)
T PF11864_consen 135 SSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYG--DIPS 212 (464)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcC--cCCh
Confidence 0000000000 00011223333333322 122333344433333322 22333467788888887653 2223
Q ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhcc--C-----ChhHHHHH
Q 002876 405 PLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK--D-----VPNVAEKA 477 (872)
Q Consensus 405 ~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--d-----~~~v~~~a 477 (872)
..++.++..+-... +-. .....+-.++.+++..- .-...+..+...|. + +..+-..|
T Consensus 213 ~sl~~~i~vLCsi~-~~~--~l~~~~w~~m~nL~~S~-------------~g~~~i~~L~~iL~~~~~~~~~~~~~lRGA 276 (464)
T PF11864_consen 213 ESLSPCIEVLCSIV-NSV--SLCKPSWRTMRNLLKSH-------------LGHSAIRTLCDILRSPDPQNKRDINVLRGA 276 (464)
T ss_pred HHHHHHHHHHhhHh-ccc--ccchhHHHHHHHHHcCc-------------cHHHHHHHHHHHHcccCccccccHHHHhhH
Confidence 44556666555544 323 56667777787777632 11245555555552 1 34555677
Q ss_pred HHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHH-Hccc
Q 002876 478 CGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVV-RCST 539 (872)
Q Consensus 478 ~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~-~~~~ 539 (872)
...+..+.-..+... ...+.--...+++.+...++.. ++.+-..++.++..++ ...+
T Consensus 277 v~~l~~ll~~~~~~~--~~~l~~~~~~vl~sl~~al~~~---~~~v~~eIl~~i~~ll~~~~~ 334 (464)
T PF11864_consen 277 VFFLRMLLWGSGEQG--YPSLPFSPSSVLPSLLNALKSN---SPRVDYEILLLINRLLDGKYG 334 (464)
T ss_pred HHHHHHHHhccccCC--cceecccHHHHHHHHHHHHhCC---CCeehHHHHHHHHHHHhHhhh
Confidence 777777766542210 1111111224788888888755 3455556777777777 4443
No 194
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.86 E-value=0.79 Score=50.23 Aligned_cols=213 Identities=11% Similarity=0.144 Sum_probs=131.2
Q ss_pred CCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcC--C---------CChHHHHHHHHHHH
Q 002876 49 DEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLS--S---------PAHDARSTASQVVA 117 (872)
Q Consensus 49 ~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~--~---------~~~~vr~~~a~~l~ 117 (872)
.+.+.++-..|-.+||+.-.. |+ ++.. .+.|+.+.. . -++.+|..+-..+.
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~-~e-------------d~~~----V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~ 308 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVS-LE-------------DPDL----VDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLS 308 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCC-CC-------------CHHH----HHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHH
Confidence 345678888898999885542 22 2222 333444433 1 13455555444444
Q ss_pred HHHHhhcCCCCchhHHHHHHHhhcCC--ChhHHHHHHHHH---HHhhhhccccccchhhHHHHHHHHHhccc------CC
Q 002876 118 KVAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETL---GYICEEVSSDAVEQDHVNKILTAVVQGMN------AS 186 (872)
Q Consensus 118 ~i~~~~~~~~~~~~l~~~l~~~l~~~--~~~~r~~al~~l---~~i~~~~~~~~l~~~~~~~i~~~l~~~l~------~~ 186 (872)
+ ....-...+..+..+..++.+. +...|..+++.+ ...+..+.+..+ ....+.|+..+...+. +.
T Consensus 309 k---S~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~ 384 (501)
T PF13001_consen 309 K---SVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNS 384 (501)
T ss_pred H---hHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCC
Confidence 3 2211136788888888888887 567888888988 777777644433 3333444444444441 12
Q ss_pred CCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhH-h--hHHHHHH
Q 002876 187 ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA-P--YIQDIFN 263 (872)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~-~--~~~~l~~ 263 (872)
..+...|..+-++++.+....+..+... -.++.-++..+.++.+++|..+-++|..++..+...-. . .....+.
T Consensus 385 ~~~~~lR~~aYe~lG~L~~~~p~l~~~d---~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~ 461 (501)
T PF13001_consen 385 SEDIELRSLAYETLGLLAKRAPSLFSKD---LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLE 461 (501)
T ss_pred cccHHHHHHHHHHHHHHHccCccccccc---HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 4577899999999999988777766432 35777788888888999999999999999998876433 1 1122222
Q ss_pred HHH-HHHhcCChhhHHHHHHHHHH
Q 002876 264 ITA-KAVREDEEPVALQAIEFWSS 286 (872)
Q Consensus 264 ~~~-~~~~~~~~~v~~~a~~~~~~ 286 (872)
.++ ....+.....|..|+.+...
T Consensus 462 ~l~~~~~~~~~~~~R~~avk~an~ 485 (501)
T PF13001_consen 462 LLLLSYIQSEVRSCRYAAVKYANA 485 (501)
T ss_pred HHHHhhccchhHHHHHHHHHHHHH
Confidence 222 22233444566666655443
No 195
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.84 E-value=0.17 Score=52.02 Aligned_cols=154 Identities=13% Similarity=0.197 Sum_probs=89.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcC---ChhhHHHHHHHHHHHHHHHHHHH
Q 002876 219 YIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRED---EEPVALQAIEFWSSVCDEEIDIL 295 (872)
Q Consensus 219 ~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~v~~~a~~~~~~l~~~~~~~~ 295 (872)
.++..+.+.+.+.+...|..++..|.. .+. +.+.+|.++.++...+... +-......+++..++...
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~t----D~g-l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N----- 247 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLRT----DPG-LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN----- 247 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcc----CCC-chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC-----
Confidence 345555555556777788888888765 221 2233333344433333211 223333334444444331
Q ss_pred HhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcc-cCCccchHhHHHHHHHHHHHHHcCC---cchhchHHH
Q 002876 296 EEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQD-QDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPF 371 (872)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~-~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~ 371 (872)
..-++.+|+-.++|.++.++....-... +.++.|.+|..|+..+..+++.++. .+.|.+...
T Consensus 248 --------------~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~t 313 (343)
T cd08050 248 --------------PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRT 313 (343)
T ss_pred --------------CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 0124567777777877776543221111 1245699999999999999999864 355666666
Q ss_pred HHhhhcCcc--hhhhHHHHHHHHHhhC
Q 002876 372 VEENITKQE--WRQREAATYAFGSILE 396 (872)
Q Consensus 372 l~~~~~~~~--~~~r~aal~~l~~l~~ 396 (872)
+.+.+.++. ....++|+.+++.++.
T Consensus 314 l~k~l~d~~~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 314 LLKALLDPKKPLTTHYGAIVGLSALGP 340 (343)
T ss_pred HHHHHcCCCCCcchhhHHHHHHHHhCc
Confidence 666665543 4558999999988764
No 196
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.82 E-value=3.2 Score=44.14 Aligned_cols=231 Identities=13% Similarity=0.182 Sum_probs=125.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhh----c-CCChhHHHHHHHHHHHhhhhccccc
Q 002876 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNI----H-QLPPHTKQATLETLGYICEEVSSDA 166 (872)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l----~-~~~~~~r~~al~~l~~i~~~~~~~~ 166 (872)
.+...|+..+.++|+.-|..+..++.++.... + +.-+.+...+.+.+ . +.........|++++.++... .--
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~-~-~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf-~~p 209 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKF-P-NLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGF-AVP 209 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH--T-TTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT---SS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-h-hhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc-CCC
Confidence 44556888888889888988888888887654 2 23333333333322 2 223345556778888887765 322
Q ss_pred cchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 002876 167 VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAI 246 (872)
Q Consensus 167 l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l 246 (872)
+...+..-+...++..... ..-......-..|+..++..-+.. ...++..+...--..+..-....+.-+..+
T Consensus 210 lk~eh~~fl~~vllPLh~~-~~~~~y~~~L~~~~~~f~~kdp~l------~~~~i~~llk~WP~t~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 210 LKEEHKQFLRKVLLPLHKS-PHLSSYHQQLSYCVVQFLEKDPSL------AEPVIKGLLKHWPKTNSQKEVLFLNELEEI 282 (409)
T ss_dssp --HHHHHHHHHTTGGGGGS-TGGGGTHHHHHHHHHHHHHH-GGG------HHHHHHHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCchh------HHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Confidence 3233444444444444442 111122333344444433221111 123444444433223333334455566666
Q ss_pred HHHhH-HhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHH
Q 002876 247 SSTYY-EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLL 325 (872)
Q Consensus 247 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 325 (872)
+...+ ..+......++..+...+++++-.|...|+.+|..-.- ...+...-..++|.+
T Consensus 283 l~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~---------------------~~li~~~~~~i~p~i 341 (409)
T PF01603_consen 283 LEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYF---------------------LSLISQNSRVILPII 341 (409)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHH---------------------HHHHHCTHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHH---------------------HHHHHhChHHHHHHH
Confidence 66443 44556667788888888899999999999999876321 123444555667777
Q ss_pred HHHHhcccCCcccCCccc--hHhHHHHHHHHHHHHH
Q 002876 326 LETLLKQEEDQDQDEGAW--NIAMAGGTCLGLVART 359 (872)
Q Consensus 326 ~~~l~~~~~d~~~~~~~~--~~r~~a~~~l~~l~~~ 359 (872)
+..+..... .-| .+|..|..++..+.+.
T Consensus 342 ~~~L~~~~~------~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 342 FPALYRNSK------NHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHSSTTS------S-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH------HHhhHHHHHHHHHHHHHHHHh
Confidence 776643221 125 5788888888777664
No 197
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.72 E-value=3.4 Score=43.56 Aligned_cols=203 Identities=9% Similarity=0.054 Sum_probs=110.0
Q ss_pred ChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHH
Q 002876 34 NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTAS 113 (872)
Q Consensus 34 ~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a 113 (872)
+.+.+...+++++.. ....++.+....++..++....+.. ..+..... .....-..+++.|..++..+...++
T Consensus 50 ~~~~y~~~~l~ll~~-~~~~d~vqyvL~Li~dll~~~~~~~-----~~f~~~~~-~~~~~~~~fl~lL~~~d~~i~~~a~ 122 (429)
T cd00256 50 LSGQYVKTFVNLLSQ-IDKDDTVRYVLTLIDDMLQEDDTRV-----KLFHDDAL-LKKKTWEPFFNLLNRQDQFIVHMSF 122 (429)
T ss_pred cHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhchHHH-----HHHHHHhh-ccccchHHHHHHHcCCchhHHHHHH
Confidence 447888889998876 5578999999998888876432110 01110000 0011223456677788899999999
Q ss_pred HHHHHHHHhhcCCCCc----hhHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhcccc-ccchhhHHHHHHHHHhcccCCC
Q 002876 114 QVVAKVAGIELPHKQW----PELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSD-AVEQDHVNKILTAVVQGMNASE 187 (872)
Q Consensus 114 ~~l~~i~~~~~~~~~~----~~l~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~-~l~~~~~~~i~~~l~~~l~~~~ 187 (872)
.+++.++... +.... +.+++.+.+.++++ +...+..|+.+++.+...-.-. .+-. ...++.+...+....
T Consensus 123 ~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~---~~~v~~L~~~L~~~~ 198 (429)
T cd00256 123 SILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL---ADGVPTLVKLLSNAT 198 (429)
T ss_pred HHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH---ccCHHHHHHHHhhcc
Confidence 9999998654 21222 22444556666554 3566777888888776642101 1100 113344444444212
Q ss_pred CCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHH
Q 002876 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL-SPEVKIRQAAFECLVAISST 249 (872)
Q Consensus 188 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~~~~~~r~~~~~~l~~l~~~ 249 (872)
.+.++...++=|+=-+. |-+. .........+++.+.+.++ ...+++-+-++.+|..++..
T Consensus 199 ~~~Ql~Y~~ll~lWlLS-F~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 199 LGFQLQYQSIFCIWLLT-FNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred ccHHHHHHHHHHHHHHh-ccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 24455555554432211 1111 1101111245566655554 23556666677777777764
No 198
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=4.4 Score=44.86 Aligned_cols=211 Identities=12% Similarity=0.145 Sum_probs=125.1
Q ss_pred HHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHhHHhhHh-hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 002876 219 YIMRVVCEAT-LSPEVKIRQAAFECLVAISSTYYEKLAP-YIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILE 296 (872)
Q Consensus 219 ~il~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~ 296 (872)
.-++.++... ++.-.+-|+.|+..|..+.+.|...+.. -++.+++.+-+.- .++++...+++.+..+..
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~--~D~E~ik~~LdTl~il~~------- 92 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDY--MDPEIIKYALDTLLILTS------- 92 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhcc--CCHHHHHHHHHHHHHHHh-------
Confidence 4445555433 3345677999999999999988755443 2444554432211 234455555544333322
Q ss_pred hcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhh
Q 002876 297 EYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENI 376 (872)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~ 376 (872)
..+.++..++ .+ .+.+.=..++..+-.. +..+..+.+.+
T Consensus 93 ----------------------------------~dd~~~v~dd----s~-qsdd~g~~iae~fik~--qd~I~lll~~~ 131 (970)
T KOG0946|consen 93 ----------------------------------HDDSPEVMDD----ST-QSDDLGLWIAEQFIKN--QDNITLLLQSL 131 (970)
T ss_pred ----------------------------------cCcchhhccc----ch-hhhHHHHHHHHHHHcC--chhHHHHHHHH
Confidence 1111100011 01 1222222344433110 22334444555
Q ss_pred cCcchhhhHHHHHHHHHhhCCCCCCcchHH---HHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCc
Q 002876 377 TKQEWRQREAATYAFGSILEGPSPEKLVPL---VNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (872)
Q Consensus 377 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~~---~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 453 (872)
...+..+|..++..+.++....+ ...... .|.-+..+...+ .|....+|..+...+..+....+ .+..-
T Consensus 132 e~~DF~VR~~aIqLlsalls~r~-~e~q~~ll~~P~gIS~lmdlL-~DsrE~IRNe~iLlL~eL~k~n~------~IQKl 203 (970)
T KOG0946|consen 132 EEFDFHVRLYAIQLLSALLSCRP-TELQDALLVSPMGISKLMDLL-RDSREPIRNEAILLLSELVKDNS------SIQKL 203 (970)
T ss_pred HhhchhhhhHHHHHHHHHHhcCC-HHHHHHHHHCchhHHHHHHHH-hhhhhhhchhHHHHHHHHHccCc------hHHHH
Confidence 55778999999999999988764 333332 267778888889 99999999999999999988664 12223
Q ss_pred cchHHHHHHHHHhccC-----ChhHHHHHHHHHHHHHHh
Q 002876 454 GNCQQIISVLLQSMKD-----VPNVAEKACGALYFLAQG 487 (872)
Q Consensus 454 ~~~~~il~~l~~~l~d-----~~~v~~~a~~al~~l~~~ 487 (872)
..++.++..|+..+.. ..-|...|...+.++.+.
T Consensus 204 VAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 204 VAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 4566677777777663 347788888888888775
No 199
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.14 Score=55.23 Aligned_cols=147 Identities=18% Similarity=0.194 Sum_probs=92.6
Q ss_pred HHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHhhhhccCCCCC
Q 002876 369 MPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA-LMQDPNNHVKDTTAWTLGRMFEFLHGSTLE 447 (872)
Q Consensus 369 ~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (872)
-+++.+.+.+.++..|.++++.++.--.+.+ - ..++..+++. . +|.+..||++|..++|-++-.-+
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTg---n----nkair~lLh~aV-sD~nDDVrRaAVialGFVl~~dp----- 587 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTG---N----NKAIRRLLHVAV-SDVNDDVRRAAVIALGFVLFRDP----- 587 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccC---c----hhhHHHhhcccc-cccchHHHHHHHHHheeeEecCh-----
Confidence 3456677788889999999887765433332 1 1223333333 5 89999999999999997776443
Q ss_pred CcccCccchHHHHHHHHHhccC--ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHH
Q 002876 448 TPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRT 525 (872)
Q Consensus 448 ~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~ 525 (872)
..+|..++.|.+ |++||..++.+|+-.|.+-+. . -.-.+++.+ ..++ ..-||.
T Consensus 588 ----------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~--------~-eAi~lLepl---~~D~---~~fVRQ 642 (929)
T KOG2062|consen 588 ----------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL--------K-EAINLLEPL---TSDP---VDFVRQ 642 (929)
T ss_pred ----------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc--------H-HHHHHHhhh---hcCh---HHHHHH
Confidence 344555555654 799999999999998875321 1 112233332 3333 456898
Q ss_pred HHHHHHHHHHHccccCcHHHHHHHHHHH
Q 002876 526 AAYETLNEVVRCSTDETAPMVMQLVPLI 553 (872)
Q Consensus 526 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l 553 (872)
.|+-+++.+.-...+..-|-+..+-..+
T Consensus 643 gAlIa~amIm~Q~t~~~~pkv~~frk~l 670 (929)
T KOG2062|consen 643 GALIALAMIMIQQTEQLCPKVNGFRKQL 670 (929)
T ss_pred HHHHHHHHHHHhcccccCchHHHHHHHH
Confidence 9998888776666554444333333333
No 200
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.61 E-value=0.14 Score=42.05 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=70.0
Q ss_pred hhhHHHHHHHHhhhcC---CChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHH
Q 002876 645 KYMPEFYKYVEMGLQN---FEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 721 (872)
Q Consensus 645 ~~~~~i~~~l~~~l~~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~ 721 (872)
+++-.++..+...+.+ ..+...+..++..++.+++..+..+.++.++++.-|-..+..+ +++..++.|+..+.
T Consensus 7 ~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~----~l~~~al~~W~~fi 82 (107)
T PF08064_consen 7 PHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP----ELREEALSCWNCFI 82 (107)
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh----hhHHHHHHHHHHHH
Confidence 3444455555555544 4556788999999999999777778888888888777777655 58889999999999
Q ss_pred HHhcc-chHHhHHHHHHHHHHHH
Q 002876 722 LAIGE-NFEKYLMYAMPMLQSAA 743 (872)
Q Consensus 722 ~~~~~-~~~~~l~~il~~l~~~l 743 (872)
..+++ ++.+++++++-.+...+
T Consensus 83 ~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 83 KTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHCCHHHHHHHHHHHHHHHHHhc
Confidence 98864 46677777776666543
No 201
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.51 E-value=1.4 Score=41.78 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=47.7
Q ss_pred hhchHHHHHhhhcC--cchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 002876 365 VPLVMPFVEENITK--QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (872)
Q Consensus 365 ~~~l~~~l~~~~~~--~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~ 439 (872)
-|.-+|.+.+.+.+ +++-+|+.+..+||.++. +..++.+...+ +|+.+.||..+..++.-+--
T Consensus 216 s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-----------e~~~~vL~e~~-~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 216 SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-----------EDCVEVLKEYL-GDEERVVRESCEVALDMLEY 280 (289)
T ss_pred chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----------HHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHH
Confidence 34555666665544 558999999999999875 33467788888 99999999999888875433
No 202
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.50 E-value=0.18 Score=41.17 Aligned_cols=95 Identities=13% Similarity=0.125 Sum_probs=70.3
Q ss_pred HhhhHHHHHHHHhhhcCCC---hhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHH
Q 002876 644 LKYMPEFYKYVEMGLQNFE---DYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI 720 (872)
Q Consensus 644 ~~~~~~i~~~l~~~l~~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i 720 (872)
.+++-.++..+.+.+.+.+ ....+..++..++.+++..+..+..+.++++.-|-..+..+ +++..++.|+..+
T Consensus 6 ~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~----eL~~~al~~W~~~ 81 (107)
T smart00802 6 KDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP----ELRSLALRCWHVL 81 (107)
T ss_pred HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHH
Confidence 3444456666666665544 45678999999999999888888888888888888777654 5889999999999
Q ss_pred HHHhcc-chHHhHHHHHHHHHHH
Q 002876 721 ALAIGE-NFEKYLMYAMPMLQSA 742 (872)
Q Consensus 721 ~~~~~~-~~~~~l~~il~~l~~~ 742 (872)
...+++ +..+.+++++..+...
T Consensus 82 i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 82 IKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHh
Confidence 998864 3556666666555543
No 203
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=95.48 E-value=1.7 Score=40.43 Aligned_cols=191 Identities=13% Similarity=0.148 Sum_probs=114.7
Q ss_pred HHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHH
Q 002876 615 RVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMT 694 (872)
Q Consensus 615 ~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~ 694 (872)
..|+-......+.++..++.+...+|....|++..++..+.+.-.+. +...+..+=.++|..++++|.+ .++.
T Consensus 7 ~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~-~f~~~~~~e~~lgaAi~amGpe------~vL~ 79 (198)
T PF08161_consen 7 SLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESE-DFSFRKELEQVLGAAIRAMGPE------QVLS 79 (198)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCC-CcchHHHHHHHHHHHHHHCCHH------HHHH
Confidence 34444455567788889999999999988888888888887765544 4678888888999999999832 2222
Q ss_pred HHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 002876 695 QLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGI 774 (872)
Q Consensus 695 ~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l 774 (872)
.+==.+..++....-|.-.+-.+-+- ..+..+.-|.+.++|.....-+...+... +. ......+-+....-+.++
T Consensus 80 ~lPLnl~~~~~~~~~raWLLPlLr~~--i~~~~L~fF~~~~lPla~~~~~~~~~~~~-~~--~~~~ak~~~~l~~QlWsl 154 (198)
T PF08161_consen 80 ILPLNLDNADDSQPGRAWLLPLLRDH--IRNASLSFFVEEFLPLARRLRQKAQKASE-AG--KSVEAKIYETLVQQLWSL 154 (198)
T ss_pred HCCCCccCCCcCCcccchhHHHHHHh--ccCCChHHHHHHHHHHHHHHHHHHHHHhh-cc--chHHHHHHHHHHHHHHHH
Confidence 21000111110111222223333332 24566778888888888765444322000 11 011122223444555667
Q ss_pred hhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 002876 775 FQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDL 822 (872)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i 822 (872)
+.++|.. +.++...++.+-+.+...+.+ ..++|..++..+..+
T Consensus 155 LP~FC~~--P~D~~~~F~~~a~~L~~~L~~---~~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 155 LPGFCNY--PTDLAESFPSFAKLLGNALYD---QPDLRPIICQALRRL 197 (198)
T ss_pred hHHhcCC--cccHHHHHHHHHHHHHHHHhc---CcchHHHHHHHHHHH
Confidence 7777764 445656667888888888875 467888888777654
No 204
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.42 E-value=2.1 Score=42.94 Aligned_cols=195 Identities=14% Similarity=0.128 Sum_probs=130.5
Q ss_pred hHhHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHhhh-hhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Q 002876 603 MQYADQMMGLFLRVFAIR-SATAHEEAMLAIGALAYATGQ-DFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRA 680 (872)
Q Consensus 603 ~~~~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 680 (872)
-|.-..+...+.++|+.. ...|...|+.....+-..+|. .+...+.-..|.++..+.. ....||-..+.++....-.
T Consensus 49 IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~-asi~Vkp~lL~i~e~~~lp 127 (307)
T PF04118_consen 49 IPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSY-ASIQVKPQLLDIYEKYYLP 127 (307)
T ss_pred eCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhcC
Confidence 345557888888998875 345889999999999888885 4445555555555555543 3458888999999988888
Q ss_pred HhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHH
Q 002876 681 LEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYT 760 (872)
Q Consensus 681 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~ 760 (872)
++..+.|.++.++..++..+.++ ..+....+...+..+....|.. .|...+.-.+. ..
T Consensus 128 L~~~L~p~l~~li~slLpGLede--~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~ii----~s-------------- 185 (307)
T PF04118_consen 128 LGPALRPCLKGLILSLLPGLEDE--GSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCII----TS-------------- 185 (307)
T ss_pred ccHHHHHHHHHHHHHhccccccC--CchHHHHHHHHHHHHHHhcChh--HHHHHHHHHHh----cC--------------
Confidence 88888899999999999999887 6788888999999999888876 33333333333 21
Q ss_pred HHHHHHHHHHHHHHhhccc------CCCc-ccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 002876 761 NSLRNGILEAFSGIFQGFK------GSPK-TQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDL 822 (872)
Q Consensus 761 ~~~~~~~~~~~~~l~~~~~------~~~~-~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i 822 (872)
..+|.+++.-+..-+.... .... ...+.|--.-++..+...+.| .+.=|++.++.++-.-
T Consensus 186 p~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D--~~iLVqR~~LDlLl~~ 252 (307)
T PF04118_consen 186 PSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLED--ENILVQRGFLDLLLSH 252 (307)
T ss_pred cchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCC--chHHHHHHHHHHHHHh
Confidence 2455555555444443322 0000 112334445577777777775 3566788877775443
No 205
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=95.40 E-value=0.92 Score=40.01 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCCC--hHHHHHHHHHHHHHHHhh--cCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcccccc
Q 002876 92 QIKSFILKTLSSPA--HDARSTASQVVAKVAGIE--LPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV 167 (872)
Q Consensus 92 ~i~~~ll~~l~~~~--~~vr~~~a~~l~~i~~~~--~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l 167 (872)
.|++.++.+|..++ ...-+.++++++.++... .+.+.|+++.+.+...... .. ..|+.++..+.-....+.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~--e~--~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSEN--EP--VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhcc--ch--HHHHHHHHhCCchhhhhHH
Confidence 47888999988764 345566667777666543 3567999999877765422 22 3466666666522224555
Q ss_pred chhhHHHHHHHHHhcccCCC-CCHHHHHHHH-HHHHHhHhhchhhccChhhH---HHHHHHHHHhhcCCCH-HHHHHHHH
Q 002876 168 EQDHVNKILTAVVQGMNASE-SNNDVRLAAT-RALYNALGFAQANFSNDMER---DYIMRVVCEATLSPEV-KIRQAAFE 241 (872)
Q Consensus 168 ~~~~~~~i~~~l~~~l~~~~-~~~~vr~~al-~~l~~~~~~~~~~~~~~~~~---~~il~~l~~~~~~~~~-~~r~~~~~ 241 (872)
.+.++.+++.+.+.+.++. .+.+....|+ .++...++...........+ +.+++.+.++.....+ .....+++
T Consensus 79 -~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~ 157 (174)
T PF04510_consen 79 -IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLR 157 (174)
T ss_pred -HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6888999999999988421 1222223333 33344444322211111111 2234444555544544 66667777
Q ss_pred HHHHHHHHh
Q 002876 242 CLVAISSTY 250 (872)
Q Consensus 242 ~l~~l~~~~ 250 (872)
-+-.+++..
T Consensus 158 ~~e~~v~~~ 166 (174)
T PF04510_consen 158 DFESFVSRQ 166 (174)
T ss_pred HHHHHHHHH
Confidence 776666543
No 206
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.38 E-value=3.6 Score=43.69 Aligned_cols=116 Identities=10% Similarity=0.108 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhc-hhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 002876 170 DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA-QANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS 248 (872)
Q Consensus 170 ~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~ 248 (872)
..+..++..++..-+ ++.+-...++.+..++.|. ++..........++..+...+.+++..+|..+++.+..+..
T Consensus 45 ~~flr~vn~IL~~Kk----~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d 120 (885)
T COG5218 45 EEFLRVVNTILACKK----NPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD 120 (885)
T ss_pred HHHHHHHHHhhcccc----CCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH
Confidence 344455555554433 2223334555666666542 22222122235677777788888999999999999998887
Q ss_pred HhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 002876 249 TYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (872)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (872)
...+.=....+.++.-+...+-|.++.||..|+.++..+.+
T Consensus 121 ~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 121 VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 76543233344556666666678888899999988877764
No 207
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.38 E-value=1.2 Score=48.58 Aligned_cols=208 Identities=12% Similarity=0.114 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcC
Q 002876 581 LCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQN 660 (872)
Q Consensus 581 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 660 (872)
.++.|..++..++.. -....+++.+...+.+ .......+..+-.|+.. ..-..|-+.++|.|...++.
T Consensus 293 Flk~Ls~~ip~fp~r--------v~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~--~s~~~~~~~~~p~l~pi~~~ 360 (700)
T KOG2137|consen 293 FLKGLSKLIPTFPAR--------VLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEG--LSQNEFGPKMLPALKPIYSA 360 (700)
T ss_pred HHHHHHHhhccCCHH--------HHHHhhhhHHHHHhcc--ccccccccchhhhhhhc--cchhhhhhhhhHHHHHHhcc
Confidence 445555555544432 2233455555554432 22222222333333322 33345667777888777765
Q ss_pred CChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHH
Q 002876 661 FEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQ 740 (872)
Q Consensus 661 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~ 740 (872)
.+..+.+...+.=+..|.++.+.+ .+...+++.|...+++. +..+++.++..+...+..+.-.+. =..++|.|.
T Consensus 361 ~~~~~~~l~i~e~mdlL~~Kt~~e--~~~~~IlplL~~S~~~~--~~~iQ~~~L~~lptv~e~iD~~~v--k~~ilP~l~ 434 (700)
T KOG2137|consen 361 SDPKQALLFILENMDLLKEKTPPE--EVKEKILPLLYRSLEDS--DVQIQELALQILPTVAESIDVPFV--KQAILPRLK 434 (700)
T ss_pred CCcccchhhHHhhHHHHHhhCChH--HHHHHHHHHHHHHhcCc--chhhHHHHHHhhhHHHHhccHHHH--HHHHHHHhh
Confidence 444455555555555566666522 23578999999999988 678899999999999998873322 235677777
Q ss_pred HHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002876 741 SAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLG 820 (872)
Q Consensus 741 ~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~ 820 (872)
+..-.. -...+|.+++-|+..++..+... ..++.+.+++..+ . ..+..+....+..+.
T Consensus 435 ~l~~~t------------t~~~vkvn~L~c~~~l~q~lD~~-------~v~d~~lpi~~~~-~--~~dp~iv~~~~~i~~ 492 (700)
T KOG2137|consen 435 NLAFKT------------TNLYVKVNVLPCLAGLIQRLDKA-------AVLDELLPILKCI-K--TRDPAIVMGFLRIYE 492 (700)
T ss_pred cchhcc------------cchHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHh-c--CCCcHHHHHHHHHHH
Confidence 653322 12467888999999998664432 2333444444333 2 256777777777777
Q ss_pred HHHHHhcC
Q 002876 821 DLADTLGS 828 (872)
Q Consensus 821 ~i~~~~g~ 828 (872)
.+.....+
T Consensus 493 ~l~~~~~~ 500 (700)
T KOG2137|consen 493 ALALIIYS 500 (700)
T ss_pred HHHhhccc
Confidence 66665544
No 208
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.28 E-value=4 Score=41.67 Aligned_cols=203 Identities=8% Similarity=0.069 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 002876 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQV 115 (872)
Q Consensus 36 ~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~ 115 (872)
+.+...+.+++.. ...++..++...++..++..+.... ..++......+...-...+..|.+.+..+..+.+.+
T Consensus 64 ~~~v~~fi~LlS~-~~kdd~v~yvL~li~DmLs~d~sr~-----~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~I 137 (442)
T KOG2759|consen 64 AQYVKTFINLLSH-IDKDDTVQYVLTLIDDMLSEDRSRV-----DLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRI 137 (442)
T ss_pred HHHHHHHHHHhch-hhhHHHHHHHHHHHHHHHhhCchHH-----HHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHH
Confidence 4666777777765 3355666667777777665432110 111111111122223357778888899999989999
Q ss_pred HHHHHHhhc---CCCCchhHHHHHHHhhcC-CChhHHHHHHHHHHHhhhhcc--ccccchhhHHHHHHHHHhcccCCCCC
Q 002876 116 VAKVAGIEL---PHKQWPELIGALLSNIHQ-LPPHTKQATLETLGYICEEVS--SDAVEQDHVNKILTAVVQGMNASESN 189 (872)
Q Consensus 116 l~~i~~~~~---~~~~~~~l~~~l~~~l~~-~~~~~r~~al~~l~~i~~~~~--~~~l~~~~~~~i~~~l~~~l~~~~~~ 189 (872)
++.++...- +.....-....+...+++ .+...+..+..||..+...-. -..........+++.+. +...+
T Consensus 138 ls~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~----s~~~~ 213 (442)
T KOG2759|consen 138 LSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA----STKCG 213 (442)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh----ccCcc
Confidence 998886431 111233345555555655 456677888888887765420 00111122233334333 22667
Q ss_pred HHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHh
Q 002876 190 NDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-PEVKIRQAAFECLVAISSTY 250 (872)
Q Consensus 190 ~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~ 250 (872)
.+++...+-|+--+- |-+... ....+-.+++.+.+.+++ ..+.|-+.++..+..++...
T Consensus 214 ~QlQYqsifciWlLt-Fn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~ 273 (442)
T KOG2759|consen 214 FQLQYQSIFCIWLLT-FNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG 273 (442)
T ss_pred hhHHHHHHHHHHHhh-cCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 778777776654321 111111 000112344444444432 23444455555555555544
No 209
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.21 E-value=2.1 Score=42.90 Aligned_cols=167 Identities=10% Similarity=0.067 Sum_probs=109.4
Q ss_pred HHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccC-cHHHHHHHHHHHHHHH
Q 002876 479 GALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQLVPLIMMEL 557 (872)
Q Consensus 479 ~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l 557 (872)
.+|+++.+.+... .......|+-..+-..|.+++...= ...|...+++....+.+..|.+ ....+.-+.+-++..+
T Consensus 30 s~L~kL~k~lq~~-~~~~~~IP~k~~v~krLaqCL~P~L--PsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~ 106 (307)
T PF04118_consen 30 SFLGKLLKALQNS-NNQFPYIPHKLQVSKRLAQCLNPAL--PSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLF 106 (307)
T ss_pred HHHHHHHHHHhcc-CCCCceeCcHHHHHHHHHHhcCCCC--ChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHH
Confidence 4556665555411 1244455666678888888875322 3457778999999999888853 3333333444444444
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 002876 558 HQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAY 637 (872)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~ 637 (872)
..+.- .++...++.+....-.+++. +.+....++..++..+.+++.+..+.++..+..+..
T Consensus 107 ~~asi-------------~Vkp~lL~i~e~~~lpL~~~------L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~ 167 (307)
T PF04118_consen 107 SYASI-------------QVKPQLLDIYEKYYLPLGPA------LRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKE 167 (307)
T ss_pred HHHHH-------------hhHHHHHHHHHHHhcCccHH------HHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHH
Confidence 33211 34556777777776666664 888899999999999999888999999999999998
Q ss_pred HhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002876 638 ATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVG 675 (872)
Q Consensus 638 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~ 675 (872)
..|.. -|+..++-.+. . ++..|..|+..+.
T Consensus 168 ~v~~~--~F~~~lwl~ii----~--sp~~Rl~al~~l~ 197 (307)
T PF04118_consen 168 AVGDK--YFWQCLWLCII----T--SPSRRLGALNYLL 197 (307)
T ss_pred hcChh--HHHHHHHHHHh----c--CcchhHHHHHHHH
Confidence 88876 23444444443 1 3467777766543
No 210
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.21 E-value=4.9 Score=42.23 Aligned_cols=271 Identities=13% Similarity=0.079 Sum_probs=150.2
Q ss_pred hhhHHHHHHHHHhhCCCC----CCcchHHHHHHHHHHHHHhccC-------CcHHHHHHHHHHHHHhhhhccCCCCCCcc
Q 002876 382 RQREAATYAFGSILEGPS----PEKLVPLVNIALNFMLTALMQD-------PNNHVKDTTAWTLGRMFEFLHGSTLETPI 450 (872)
Q Consensus 382 ~~r~aal~~l~~l~~~~~----~~~~~~~~~~i~~~l~~~l~~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 450 (872)
..|.-|+..|........ ...+.+.++.+++.+..-+ .. .+.++..+|+.++|.+.-+..-- ..
T Consensus 8 ~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi-~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~----~~ 82 (372)
T PF12231_consen 8 SSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDI-SSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV----ST 82 (372)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-hcccCCCCCcchHHHHHHHHHHHHHHccHHHH----hh
Confidence 345455555444433321 1223444555666665555 33 26788899999999877642100 12
Q ss_pred cCccchHHHHHHHHHhccC---ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhcc-CCchhhhhHHH
Q 002876 451 INQGNCQQIISVLLQSMKD---VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHR-EDAGESRLRTA 526 (872)
Q Consensus 451 ~~~~~~~~il~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~-~~~~~~~v~~~ 526 (872)
...++..-++...+..+.+ +..+...+.++|.. +.+ +...+.......+-..+..+.+ -. ...+-..
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f-----~~~~~~~~~~~~l~~~l~~i~~~~~--s~si~~e 153 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKF-----SPKIMTSDRVERLLAALHNIKNRFP--SKSIISE 153 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCC-----CCcccchhhHHHHHHHHHHhhccCC--chhHHHH
Confidence 3344445577777777764 23444444444432 122 2444444444433333333333 22 3455567
Q ss_pred HHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh----Hh
Q 002876 527 AYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY----VF 602 (872)
Q Consensus 527 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~----~~ 602 (872)
.+.++..++...+..........+|.++..+..... .++..+..+...+...+++...... .+
T Consensus 154 rL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k-------------~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~ 220 (372)
T PF12231_consen 154 RLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAK-------------DIRTKAISLLLEAKKCLGPNKELSKSVLEDL 220 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-------------HHHHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 788888888888877666666666666665543211 2233333333333333433210000 00
Q ss_pred ------hHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhh---hHhhhHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002876 603 ------MQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQD---FLKYMPEFYKYVEMGLQNFEDYQVCAITVGV 673 (872)
Q Consensus 603 ------~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~ 673 (872)
..+.+.+.+.+..++.+++ -...+...++.+..-+|.. --+++..++.....++++. ++.+|..|+.+
T Consensus 221 ~~~~~~~~~~~~~~~~L~~mi~~~~--~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~a 297 (372)
T PF12231_consen 221 QRSLENGKLIQLYCERLKEMIKSKD--EYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKA 297 (372)
T ss_pred ccccccccHHHHHHHHHHHHHhCcC--CcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 0234445555666666532 2345677777777777743 3367888888888888865 66999999999
Q ss_pred HHHHHHHHh
Q 002876 674 VGDLCRALE 682 (872)
Q Consensus 674 l~~l~~~~~ 682 (872)
...++....
T Consensus 298 W~~liy~~~ 306 (372)
T PF12231_consen 298 WRRLIYASN 306 (372)
T ss_pred HHHHHHHhc
Confidence 999988665
No 211
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.20 E-value=5.9 Score=43.15 Aligned_cols=409 Identities=10% Similarity=0.048 Sum_probs=187.4
Q ss_pred HhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcc-hhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCc
Q 002876 345 IAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQE-WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPN 423 (872)
Q Consensus 345 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~-~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~ 423 (872)
-|..|.+-+......++-..++.+.......+.... ...|.+++..+.++++... ......=..++..+...- .+++
T Consensus 6 ~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~-~~~~~~R~~fF~~I~~~~-~~~d 83 (464)
T PF11864_consen 6 ERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQD-SSSGLMRAEFFRDISDPS-NDDD 83 (464)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHHhcCC-Cchh
Confidence 355445555444455555556666666666665543 4689999999999887753 211111122222232222 3334
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCCh------------------------hHHHHHHH
Q 002876 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVP------------------------NVAEKACG 479 (872)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~------------------------~v~~~a~~ 479 (872)
...|-.++.+|..=++.+ ..+...+.+.+..-+..-. ........
T Consensus 84 ~~~~l~aL~~LT~~Grdi-----------~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 84 FDLRLEALIALTDNGRDI-----------DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HHHHHHHHHHHHcCCcCc-----------hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 455555555554333322 1233344444443332100 00111122
Q ss_pred HHHHHHHhcccCCCCCCCCc-hhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHH
Q 002876 480 ALYFLAQGFEDAISPSSPLT-PFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELH 558 (872)
Q Consensus 480 al~~l~~~~~~~~~~~~~l~-~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 558 (872)
-+..|+.++-+ .+...+. ..+..++..++........ ...+ ..++..+..++....- ..+.+..++ +.++
T Consensus 153 ~ll~~l~nviK--fn~~~l~e~~i~~lv~~i~~iC~~Ts~-~~di-~~~L~vldaii~y~~i-P~~sl~~~i----~vLC 223 (464)
T PF11864_consen 153 DLLQFLVNVIK--FNFNYLDEDEISSLVDQICTICKSTSS-EDDI-EACLSVLDAIITYGDI-PSESLSPCI----EVLC 223 (464)
T ss_pred HHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHHhccCc-HHHH-HHHHHHHHHHHHcCcC-ChHHHHHHH----HHHh
Confidence 22223222211 1223333 4566777777776544332 2333 4677777777774421 122233333 3333
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcc------ccchhhHHHHHH
Q 002876 559 QTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR------SATAHEEAMLAI 632 (872)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~------~~~~~~~a~~~l 632 (872)
...+. . ++...+-.++..++. . +.....+..+..+|.++ +..+-..|+..+
T Consensus 224 si~~~----~-------~l~~~~w~~m~nL~~---S---------~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l 280 (464)
T PF11864_consen 224 SIVNS----V-------SLCKPSWRTMRNLLK---S---------HLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFL 280 (464)
T ss_pred hHhcc----c-------ccchhHHHHHHHHHc---C---------ccHHHHHHHHHHHHcccCccccccHHHHhhHHHHH
Confidence 32210 1 122223444444432 1 23445666677777322 223445788888
Q ss_pred HHHHHHhhhhhHhh--hH--HHHHHHHhhhcCCChhhHHHHHHHHHHHHH-HHHhcc-ccccHHHHHHHH---HHHccCC
Q 002876 633 GALAYATGQDFLKY--MP--EFYKYVEMGLQNFEDYQVCAITVGVVGDLC-RALEDK-ILPYCDGIMTQL---LKDLSSN 703 (872)
Q Consensus 633 ~~l~~~~~~~~~~~--~~--~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~-~~~~~~-~~~~~~~i~~~l---~~~l~~~ 703 (872)
+.+....|++-.|. +. .++|.+...++.... .+-...+.++..+. +..+.. .....+.++..+ ...+...
T Consensus 281 ~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~-~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~ 359 (464)
T PF11864_consen 281 RMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSP-RVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPF 359 (464)
T ss_pred HHHHhccccCCcceecccHHHHHHHHHHHHhCCCC-eehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhcccc
Confidence 88887775443333 23 388989888875433 34334444555554 444332 122233333333 3333222
Q ss_pred CCCCC---CchhHHHHHHHHHHHhcc-----chHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHh
Q 002876 704 QLHRS---VKPPIFSCFGDIALAIGE-----NFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIF 775 (872)
Q Consensus 704 ~~~~~---v~~~~~~~l~~i~~~~~~-----~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~ 775 (872)
....+ -.......+.+++..+.. +|.---+.++..+.+..+... ++....+. ..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~~~~~~~f~~~~~~~lp-----------------~s~~~~vl-~~ 421 (464)
T PF11864_consen 360 DSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGPKDKLFNFFERVHSYLP-----------------DSSALLVL-FY 421 (464)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHhCCCcCccHHHHHHHHHHHhccCC-----------------HHHHHHHH-HH
Confidence 11000 002333333333333221 122123445555544433221 01111111 11
Q ss_pred h-cccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 002876 776 Q-GFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDL 822 (872)
Q Consensus 776 ~-~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i 822 (872)
. ..+.. .-..+...+...+.... +++.+.++|..|+.++.+|
T Consensus 422 ~~~~~~P----s~~~W~~n~~~ll~~F~-~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 422 EERSCSP----SNPDWLDNLQKLLDRFY-NRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred HhcccCC----CChHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHhhC
Confidence 1 11111 01136667777777776 5578999999999998764
No 212
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.06 E-value=4.7 Score=41.23 Aligned_cols=71 Identities=11% Similarity=0.144 Sum_probs=51.7
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHH--HHHHHHHHccCCCCCCCCchhHHHHHHHHHH
Q 002876 649 EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDG--IMTQLLKDLSSNQLHRSVKPPIFSCFGDIAL 722 (872)
Q Consensus 649 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~ 722 (872)
.++..|.+.|+..+++.+...|+.=+|.+++..|+.- ..+.+ -=+.+++++..+ +++||-.|+.|+..+..
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk-~vv~k~ggKe~vM~Llnh~--d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGK-AVVEKYGGKERVMNLLNHE--DPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHh-HHHHHhchHHHHHHHhcCC--CchHHHHHHHHHHHHHh
Confidence 3677788888877778888888888999999876421 11111 225567778877 88999999999887754
No 213
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.03 E-value=1.1 Score=42.83 Aligned_cols=82 Identities=11% Similarity=0.101 Sum_probs=56.6
Q ss_pred hhHhhhHHHHHHHHhhhc-----C-C---ChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchh
Q 002876 642 DFLKYMPEFYKYVEMGLQ-----N-F---EDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPP 712 (872)
Q Consensus 642 ~~~~~~~~i~~~l~~~l~-----~-~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~ 712 (872)
-..||+.+++|.++.++- + + +...+|..|..+++..+.+++..-...-+.+...+++.+-+.+......-.
T Consensus 270 FvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YG 349 (450)
T COG5095 270 FVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYG 349 (450)
T ss_pred eecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhh
Confidence 456999999999887752 2 1 223588899999999999888655555667777777776555323345556
Q ss_pred HHHHHHHHHHH
Q 002876 713 IFSCFGDIALA 723 (872)
Q Consensus 713 ~~~~l~~i~~~ 723 (872)
++.+++.+...
T Consensus 350 alkgls~l~ke 360 (450)
T COG5095 350 ALKGLSILSKE 360 (450)
T ss_pred hhhhhhhhchh
Confidence 77777766543
No 214
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.5 Score=47.80 Aligned_cols=133 Identities=15% Similarity=0.161 Sum_probs=100.9
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchh
Q 002876 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA 209 (872)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (872)
..-+..++..+...+..+|..|+..+..+.... |..+ ..+...+++.+...+. |.+..||....+.+...+.....
T Consensus 57 ~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~-p~~l-~~~~~~ll~~~~~~i~--D~~~~vR~~~~qll~~~i~~~~~ 132 (393)
T KOG2149|consen 57 GLTLKELLSQLKHHNAKVRKDALNGLKDLLKSH-PAEL-QSHLYALLQKLRELIL--DDDSLVRDALYQLLDSLILPACK 132 (393)
T ss_pred cccHHHHHhhhcCchHhhhHHHHHHHHHHHHhC-hHHH-HHHHHHHHHHhhhhhc--CccccHHHHHHHHHHHHHhhcch
Confidence 344566667788889999999999999888875 7766 6788888888888877 88999999999999887754432
Q ss_pred hccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHH
Q 002876 210 NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAK 267 (872)
Q Consensus 210 ~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 267 (872)
.. .......++..+..++..-.+++|.-++..|..++..+|+.+..+...+++.+..
T Consensus 133 e~-~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d 189 (393)
T KOG2149|consen 133 ED-QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKD 189 (393)
T ss_pred hh-hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 22 1122356777888888888899999999999999999977666554445554433
No 215
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.23 Score=51.89 Aligned_cols=148 Identities=15% Similarity=0.172 Sum_probs=95.7
Q ss_pred HHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHhhhhccCCCCCCc
Q 002876 371 FVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA-LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETP 449 (872)
Q Consensus 371 ~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 449 (872)
++.+.+.|.+...|.++++.++.--.+.+. ..++..+++. . +|.+..||.+|..++|-++-.-+
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~av-sD~nDDVrRAAViAlGfvc~~D~------- 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAV-SDGNDDVRRAAVIALGFVCCDDR------- 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc-------chhHhhhheeec-ccCchHHHHHHHHheeeeEecCc-------
Confidence 455667778888899888777654444321 1233344444 5 89999999999999997665321
Q ss_pred ccCccchHHHHHHHHHhccC--ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHH
Q 002876 450 IINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAA 527 (872)
Q Consensus 450 ~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~ 527 (872)
..++..++.|.+ |+.||...+.+|+-.|.+-++ .....+++.|+. +. +.-+|..+
T Consensus 585 --------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~---------~~a~diL~~L~~---D~---~dfVRQ~A 641 (926)
T COG5116 585 --------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD---------KVATDILEALMY---DT---NDFVRQSA 641 (926)
T ss_pred --------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc---------HHHHHHHHHHhh---Cc---HHHHHHHH
Confidence 445555556654 689999999999998876432 123344444433 32 56789999
Q ss_pred HHHHHHHHHccccCcHHHHHHHHHHHHHH
Q 002876 528 YETLNEVVRCSTDETAPMVMQLVPLIMME 556 (872)
Q Consensus 528 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~ 556 (872)
+-+++.+...+.....|-+..+...+.+.
T Consensus 642 mIa~~mIl~Q~n~~Lnp~v~~I~k~f~~v 670 (926)
T COG5116 642 MIAVGMILMQCNPELNPNVKRIIKKFNRV 670 (926)
T ss_pred HHHHHHHHhhcCcccChhHHHHHHHHHHH
Confidence 99998888777766555444444444333
No 216
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=9.5 Score=43.56 Aligned_cols=95 Identities=9% Similarity=0.032 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh---hhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHh
Q 002876 606 ADQMMGLFLRVFAIRSATAHEEAMLAIGALAYAT---GQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALE 682 (872)
Q Consensus 606 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 682 (872)
+.+|+.....+|.+++..+|-+++.++......+ ...+.|...+.||.++..+... ++-+...|+.++..++...|
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k-~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCK-DPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcC-chHHHHHHHHHHHHHHHHhh
Confidence 4467777778888888889999999888755444 4678899999999999999854 56778889999999888877
Q ss_pred ccc-cccHHHHHHHHHHHcc
Q 002876 683 DKI-LPYCDGIMTQLLKDLS 701 (872)
Q Consensus 683 ~~~-~~~~~~i~~~l~~~l~ 701 (872)
+=+ ..++.+++|.+-..++
T Consensus 880 DFv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 422 2244555555544443
No 217
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.54 E-value=4.7 Score=44.33 Aligned_cols=207 Identities=13% Similarity=0.158 Sum_probs=121.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCch
Q 002876 231 PEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPC 310 (872)
Q Consensus 231 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (872)
.++.-+..-++.|..++..+|..+ ....+++.+...+.+. ...-..+-....+++.. ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv--~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~-----------------s~ 343 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARV--LFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGL-----------------SQ 343 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHH--HHHhhhhHHHHHhccc--cccccccchhhhhhhcc-----------------ch
Confidence 456667778888888887776542 2346666666665432 22222222222333211 01
Q ss_pred HhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHc-CCcchhchHHHHHhhhcCcchhhhHHHHH
Q 002876 311 FYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-GDDIVPLVMPFVEENITKQEWRQREAATY 389 (872)
Q Consensus 311 ~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~~~~~~~~~r~aal~ 389 (872)
..+.+.++|.+...+... +. -.+..+..+-++.|.+.. .+++...++|++...+++.+..+++.++.
T Consensus 344 ----~~~~~~~~p~l~pi~~~~--~~------~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~ 411 (700)
T KOG2137|consen 344 ----NEFGPKMLPALKPIYSAS--DP------KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQ 411 (700)
T ss_pred ----hhhhhhhhHHHHHHhccC--Cc------ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHH
Confidence 222334455555544421 10 123444455556666666 46778899999999999999999999999
Q ss_pred HHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhcc
Q 002876 390 AFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK 468 (872)
Q Consensus 390 ~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (872)
.+..+++... .+.+ ..++|.+....-...+..|+..++.|++.+++.+. ....++.+++.+ ++.+
T Consensus 412 ~lptv~e~iD----~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD---------~~~v~d~~lpi~-~~~~ 477 (700)
T KOG2137|consen 412 ILPTVAESID----VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD---------KAAVLDELLPIL-KCIK 477 (700)
T ss_pred hhhHHHHhcc----HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH---------HHHhHHHHHHHH-HHhc
Confidence 9999998774 1222 34555554443267889999999999999998763 233444444443 4443
Q ss_pred -CChhHHHHHHHHHHHH
Q 002876 469 -DVPNVAEKACGALYFL 484 (872)
Q Consensus 469 -d~~~v~~~a~~al~~l 484 (872)
++|.+......+...+
T Consensus 478 ~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 478 TRDPAIVMGFLRIYEAL 494 (700)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 4566544444444333
No 218
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.53 Score=49.32 Aligned_cols=113 Identities=20% Similarity=0.125 Sum_probs=82.0
Q ss_pred hcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccc
Q 002876 376 ITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGN 455 (872)
Q Consensus 376 ~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 455 (872)
.+|.+-.+|+||+.++|.++-.- +..++..+..|+.+.++.||...+.++|-.+...+. .
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~----------~- 620 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD----------K- 620 (926)
T ss_pred cccCchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----------H-
Confidence 56677789999999999876532 122333444452567899999999999988776531 1
Q ss_pred hHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccC
Q 002876 456 CQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRE 516 (872)
Q Consensus 456 ~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~ 516 (872)
..+..|-..+.| +.-||..|+-+++.+...+ ...+.|....|...+.+.+.+.
T Consensus 621 --~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~------n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 621 --VATDILEALMYDTNDFVRQSAMIAVGMILMQC------NPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred --HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc------CcccChhHHHHHHHHHHHHhhh
Confidence 233333344446 6789999999999998876 6789999999999998888664
No 219
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.43 E-value=1.2 Score=44.59 Aligned_cols=145 Identities=14% Similarity=0.104 Sum_probs=101.0
Q ss_pred hhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhh----Hh--hhHHHHHHHHhhhc-------CCChhhHHH
Q 002876 602 FMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDF----LK--YMPEFYKYVEMGLQ-------NFEDYQVCA 668 (872)
Q Consensus 602 ~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~----~~--~~~~i~~~l~~~l~-------~~~~~~v~~ 668 (872)
+..+.+-++|.++.++++.+...+...+.++..+....+... .. ..+-+-+.+...+- ..+...+-.
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~ 192 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQ 192 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHH
Confidence 777888999999999999999999999999999998776433 21 12223333333332 133456777
Q ss_pred HHHHHHHHHHHHHh-ccccc---cHHHHH-HHHHHHccCCCC--CCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHH
Q 002876 669 ITVGVVGDLCRALE-DKILP---YCDGIM-TQLLKDLSSNQL--HRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQS 741 (872)
Q Consensus 669 ~a~~~l~~l~~~~~-~~~~~---~~~~i~-~~l~~~l~~~~~--~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~ 741 (872)
.++.++-.++.... ..-.+ .+.+++ +.++..+.-... +..++...+..+..+...+|.....|+..++|.+.+
T Consensus 193 ~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~ 272 (282)
T PF10521_consen 193 AAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQ 272 (282)
T ss_pred HHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 88888888877642 11112 222333 335554443321 366778899999999999999999999999999999
Q ss_pred HHhhc
Q 002876 742 AAELS 746 (872)
Q Consensus 742 ~l~~~ 746 (872)
.+.+.
T Consensus 273 ~l~np 277 (282)
T PF10521_consen 273 ILENP 277 (282)
T ss_pred HhcCC
Confidence 88765
No 220
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.37 E-value=5.3 Score=38.70 Aligned_cols=195 Identities=16% Similarity=0.195 Sum_probs=112.1
Q ss_pred cCCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHH
Q 002876 13 QSVDGTVRKQAEESLKQYQEQN---LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSV 89 (872)
Q Consensus 13 ~s~~~~~r~~a~~~L~~~~~~~---~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~ 89 (872)
..++++.....-+.|.++...+ .+.++..|....... ....+..+..++-.....+.+ .| +..
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~--~~~~~~~~~rLl~~lw~~~~r--------~f----~~L 76 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQG--SLELRYVALRLLTLLWKANDR--------HF----PFL 76 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCC--chhHHHHHHHHHHHHHHhCch--------HH----HHH
Confidence 3467888888888888876663 234555555444432 344456666666555543221 11 222
Q ss_pred HHHHHHHHHHhc---CCC--ChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhh-cCCChhHHHHHHHHHHHhhhhcc
Q 002876 90 KAQIKSFILKTL---SSP--AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNI-HQLPPHTKQATLETLGYICEEVS 163 (872)
Q Consensus 90 ~~~i~~~ll~~l---~~~--~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~~al~~l~~i~~~~~ 163 (872)
+..+....++.. .+. .....-..+..+..++... | +.|.++++.+...+ .+.++..+..+++.+..+|+.-
T Consensus 77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~- 153 (234)
T PF12530_consen 77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR-P-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE- 153 (234)
T ss_pred HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC-h-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh-
Confidence 333333233321 222 3455566677788888776 6 49999999999999 6778888999999999999643
Q ss_pred ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccCh----hhHHHHHHHHHHhhcCCCHH
Q 002876 164 SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSND----MERDYIMRVVCEATLSPEVK 234 (872)
Q Consensus 164 ~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~----~~~~~il~~l~~~~~~~~~~ 234 (872)
.+ .+......+...+.. +..+.+-.. +.+++...+..-.+. .....++..+.+.....+..
T Consensus 154 --vv---d~~s~w~vl~~~l~~-~~rp~v~~~----l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 154 --VV---DFYSAWKVLQKKLSL-DYRPLVLKS----LCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred --hc---cHHHHHHHHHHhcCC-ccchHHHHH----HHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence 21 222333333333332 555555443 444443333222111 12356778888877666543
No 221
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=13 Score=42.61 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=68.6
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHHHHH---hccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhcc
Q 002876 650 FYKYVEMGLQNFEDYQVCAITVGVVGDLCRAL---EDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE 726 (872)
Q Consensus 650 i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~---~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~ 726 (872)
++......+. +++..+|..++.++..-...+ +..+.|.+.+.=+.++..+..+ ++-+...++.|+..++...|+
T Consensus 804 Il~r~~~~LS-~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k--~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 804 ILGRGIHLLS-HESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCK--DPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHhc-chhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcC--chHHHHHHHHHHHHHHHHhhh
Confidence 3444444455 445678888888876654444 3567788888888888888877 677778899999999998886
Q ss_pred ch-HHhHHHHHHHHHHHHhhc
Q 002876 727 NF-EKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 727 ~~-~~~l~~il~~l~~~l~~~ 746 (872)
-+ ..++..++|.+-..+++.
T Consensus 881 Fv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 43 368888999988777654
No 222
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=94.15 E-value=2.7 Score=46.51 Aligned_cols=151 Identities=9% Similarity=0.071 Sum_probs=84.6
Q ss_pred cHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhH-------HHHHHHHHHHHhhccCCCCCCccHHHHH
Q 002876 688 YCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYL-------MYAMPMLQSAAELSVHTSGVDDDMTEYT 760 (872)
Q Consensus 688 ~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l-------~~il~~l~~~l~~~~~~~~~d~~~~~~~ 760 (872)
|-+.++...+.++.... +..+.+.+..+|..++...+. +..|+ +..+|.+.+.+... |+
T Consensus 515 w~p~vVr~Yl~Ll~~s~-n~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~------~~------ 580 (717)
T KOG1048|consen 515 WHPSVVRPYLLLLALSK-NDNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRND------DS------ 580 (717)
T ss_pred ecHHHHHHHHHHHHHhc-chHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcC------Cc------
Confidence 34566666566665332 566778888888887765432 22332 23468888888665 22
Q ss_pred HHHHHHHHHHHHHHhhcccCCCcccccccchH-HHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHhcCCcccccc
Q 002876 761 NSLRNGILEAFSGIFQGFKGSPKTQLLMPYAP-HILQFLDSLYMEK----DMDDVVTKTAIGVLGDLADTLGSNAGPLIQ 835 (872)
Q Consensus 761 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~i~~~l~~~l~~~----~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~ 835 (872)
. ++.+.++++..+... ...++.+. ..++-+...+-+. ..++++...++.++.++...--..-..++.
T Consensus 581 -~----vv~s~a~~LrNls~d---~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~ 652 (717)
T KOG1048|consen 581 -D----VVRSAAGALRNLSRD---IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLE 652 (717)
T ss_pred -h----HHHHHHHHHhhhccC---chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHh
Confidence 1 333345555554432 11222222 3445555555432 346888888999999998554444455555
Q ss_pred CchHHHHHHHHHhcCCChhHHHHHHH
Q 002876 836 QSVSSKDFLNECLSSDDHMIKESAEW 861 (872)
Q Consensus 836 ~~~~v~~~l~~~~~~~~~~~~~~~~~ 861 (872)
... ++.++.-..+.-.++.-+.|..
T Consensus 653 ~~g-~~kL~~I~~s~~S~k~~kaAs~ 677 (717)
T KOG1048|consen 653 IKG-IPKLRLISKSQHSPKEFKAASS 677 (717)
T ss_pred ccC-hHHHHHHhcccCCHHHHHHHHH
Confidence 443 6666665555555555544443
No 223
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.13 E-value=0.66 Score=36.73 Aligned_cols=73 Identities=21% Similarity=0.205 Sum_probs=60.4
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhch
Q 002876 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (872)
Q Consensus 131 ~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (872)
+.+...+..++++.+.+|..|+..|..+++.-+ ......+.++..+...++ |+++-|-..|++++..++...+
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~--d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLK--DEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcC--CCCchHHHHHHHHHHHHHHHCh
Confidence 345667777888888999999999999998763 224568899999999999 8999999999999999887544
No 224
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.03 E-value=9.2 Score=40.19 Aligned_cols=141 Identities=10% Similarity=0.116 Sum_probs=91.8
Q ss_pred ChhHHHHHHHHHHHhhhhcc-ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHH
Q 002876 144 PPHTKQATLETLGYICEEVS-SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMR 222 (872)
Q Consensus 144 ~~~~r~~al~~l~~i~~~~~-~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~ 222 (872)
+......|+++++.+..... ...++......++...+..+.+...+..+....+.++..- .++..+........++.
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q--~f~~~~~~~~~~~~l~~ 136 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ--KFSPKIMTSDRVERLLA 136 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCCCcccchhhHHHHHH
Confidence 44667789999998775421 1223223344466777777765455667777777777651 12222211121234555
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002876 223 VVCEATL-SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSS 286 (872)
Q Consensus 223 ~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~ 286 (872)
.+....+ -++..+-...+.++..++..+|..|..+...-++.++..+-+....++..|..+...
T Consensus 137 ~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~ 201 (372)
T PF12231_consen 137 ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLE 201 (372)
T ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 5555443 456677788999999999999999999988888888888887777888877655433
No 225
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.02 E-value=9 Score=39.99 Aligned_cols=121 Identities=12% Similarity=0.147 Sum_probs=83.7
Q ss_pred CCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc-ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHh
Q 002876 127 KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS-SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (872)
Q Consensus 127 ~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (872)
-.|..+.+.+...+-+++..+|.++++++.+++.... -..+.+-+.+. .+...+..+.....-|..|++.+..+++
T Consensus 21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~---~ii~SL~~~~~~~~ER~QALkliR~~l~ 97 (371)
T PF14664_consen 21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDI---FIIRSLDRDNKNDVEREQALKLIRAFLE 97 (371)
T ss_pred hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCch---hhHhhhcccCCChHHHHHHHHHHHHHHH
Confidence 3688888888876666668999999999998877531 01110112222 2333343323455669999999999887
Q ss_pred hch--hhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhH
Q 002876 206 FAQ--ANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA 255 (872)
Q Consensus 206 ~~~--~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 255 (872)
.-. +.+ ...+++.+.....++++..|..|++++..++-..|+.+.
T Consensus 98 ~~~~~~~~-----~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~ 144 (371)
T PF14664_consen 98 IKKGPKEI-----PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVA 144 (371)
T ss_pred hcCCcccC-----CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHH
Confidence 622 222 146788888888888999999999999999998887643
No 226
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.91 E-value=31 Score=45.84 Aligned_cols=328 Identities=12% Similarity=0.088 Sum_probs=172.2
Q ss_pred hHHHHHhhhcCcchhhhHHHHHHHHHhhCCC-------CCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 002876 368 VMPFVEENITKQEWRQREAATYAFGSILEGP-------SPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (872)
Q Consensus 368 l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~-------~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (872)
+++.+.+.+...+...+.++..++..+.... ......+....+++.+.+.. .++.|.-|...+..++.+.+.
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lC-y~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLC-YDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHh-ccHhHHHHcCCCceeeeehhh
Confidence 5566777777778888888888887764421 11223455677888888888 899999999999888888887
Q ss_pred ccCCCCCCcccCccchHHHHHHHHHhccC-C---hh-HHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhcc
Q 002876 441 LHGSTLETPIINQGNCQQIISVLLQSMKD-V---PN-VAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHR 515 (872)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~---~~-v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~ 515 (872)
.+. ...-++...++..+.-.+.| . +. -...+-..+..+...+-........-......++..+..-+.+
T Consensus 1064 ~~~------~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~n 1137 (3550)
T KOG0889|consen 1064 MPS------LWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFN 1137 (3550)
T ss_pred chH------HHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcC
Confidence 641 12234444556666555554 1 11 1223334444444432111000111112344556666666666
Q ss_pred CCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHH-HHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 002876 516 EDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMM-ELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGS 594 (872)
Q Consensus 516 ~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 594 (872)
+ +..||+.+..+|..+....+......+..+...++. .+... .+..-...+...+.++..+ ..+++
T Consensus 1138 p---N~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~---------lr~~p~~~qig~vd~~~fC-~~l~p 1204 (3550)
T KOG0889|consen 1138 P---NSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKP---------LRALPFTIQIGHLDAITFC-LSLGP 1204 (3550)
T ss_pred C---chHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccc---------cccCCHHHHhhhHHHHHHH-HHcCC
Confidence 5 568999999999999998887666655555444411 11110 0000001122233333222 22333
Q ss_pred CcchhhHhhHhHHHHHHH--HHHHHh---------------cc----ccchhhHHHHHHHHHHHHhh---hhhHhhhHHH
Q 002876 595 SEQTKYVFMQYADQMMGL--FLRVFA---------------IR----SATAHEEAMLAIGALAYATG---QDFLKYMPEF 650 (872)
Q Consensus 595 ~~~~~~~~~~~~~~i~~~--l~~~l~---------------~~----~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~i 650 (872)
. ...+.+.+... ....+. .. ...+|..++.+++....... ....++.+.+
T Consensus 1205 ~------~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~ki 1278 (3550)
T KOG0889|consen 1205 C------LFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKI 1278 (3550)
T ss_pred c------ccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHH
Confidence 3 22222222111 111110 01 11246666666666655443 3455778889
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhc
Q 002876 651 YKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG 725 (872)
Q Consensus 651 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~ 725 (872)
+..+++.+..+ .+++...+..++......-.......+...+..++..+.+-. ......+..++.+..-..
T Consensus 1279 i~v~fk~l~~~-~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~---~lsv~~l~~ls~l~~ll~ 1349 (3550)
T KOG0889|consen 1279 IAVFFKSLYKR-SSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDHN---NLSVPGLEGLSRLLRLLI 1349 (3550)
T ss_pred HHHHHHHHcCC-hHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHhh---hhhHHHHHHHHHHHHHHH
Confidence 99888888754 447766666666544332111122234455555555555542 233445555555554433
No 227
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.81 E-value=3.4 Score=43.78 Aligned_cols=133 Identities=13% Similarity=0.174 Sum_probs=79.2
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCC---ChhhHHHHHHHHHHHHHHHHhccc
Q 002876 609 MMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNF---EDYQVCAITVGVVGDLCRALEDKI 685 (872)
Q Consensus 609 i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~---~~~~v~~~a~~~l~~l~~~~~~~~ 685 (872)
.+..+.+.+-..+...|..|+..|.. ..| +..+++-+..++....... .+.........++..|.++-.-.+
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T---DsG--L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~l 282 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET---DSG--LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFL 282 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc---Ccc--HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccch
Confidence 34444444444666677777665542 222 2222222222232222211 233333334444444444434457
Q ss_pred cccHHHHHHHHHHHccCCCC--------CCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhc
Q 002876 686 LPYCDGIMTQLLKDLSSNQL--------HRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 686 ~~~~~~i~~~l~~~l~~~~~--------~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~ 746 (872)
.||+..+++.++.++-..+. ++.+|..++..++.++..++......-+.++..+.+++.+.
T Consensus 283 epYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 283 EPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred hhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 89999999999998754322 55689999999999999998877776667777788777654
No 228
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.64 E-value=1 Score=35.71 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=57.7
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHh
Q 002876 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK 253 (872)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 253 (872)
+...+..+. |+.+.+|..++..+..++..-. ......+.++.++...++++++-+--.|.++|..++..+|+.
T Consensus 5 ~~~al~~L~--dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLN--DPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHcc--CCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 344455566 8888999999999999886332 122234688999999999999999999999999999988764
No 229
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=93.43 E-value=8.1 Score=40.31 Aligned_cols=224 Identities=15% Similarity=0.110 Sum_probs=128.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHH---------HhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 11 NAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAG---------ELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 11 ~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~---------~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
.+++++.++|..|.+.+-.+-.. +.++..+.+ -+..++.....|..|..+.|.++..+. .
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~---------~ 101 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK---------G 101 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC---------C
Confidence 56788899999999998766554 344433332 122224467889999999999886421 1
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCC-CCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002876 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH-KQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (872)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~ 160 (872)
+.+.-..+...++....+++...|..+-.++..++... |. -.+.+-+..+.+.+.++....-...+.++-++.+
T Consensus 102 ----~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~-P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 102 ----PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLN-PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred ----cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC-HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence 12222346667888888899999999999999999765 41 1233344555555555433444555555555555
Q ss_pred hccc-ccc-chhhHHHHHHHHHhcc-cCCCCCH--HHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHH
Q 002876 161 EVSS-DAV-EQDHVNKILTAVVQGM-NASESNN--DVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKI 235 (872)
Q Consensus 161 ~~~~-~~l-~~~~~~~i~~~l~~~l-~~~~~~~--~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~ 235 (872)
.-.. ..+ ....++.++..+...- .....+. +.-..+..++..++..-++.+.-......-++.+...+.-+.+++
T Consensus 177 ~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~i 256 (371)
T PF14664_consen 177 SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEI 256 (371)
T ss_pred CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHH
Confidence 4211 111 1134566666555441 0001222 233344444444443222211100000134555666777789999
Q ss_pred HHHHHHHHHHHHHHh
Q 002876 236 RQAAFECLVAISSTY 250 (872)
Q Consensus 236 r~~~~~~l~~l~~~~ 250 (872)
|...++.+..+....
T Consensus 257 r~~Ildll~dllrik 271 (371)
T PF14664_consen 257 RKAILDLLFDLLRIK 271 (371)
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999999988753
No 230
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.41 E-value=9.9 Score=43.06 Aligned_cols=137 Identities=20% Similarity=0.171 Sum_probs=79.7
Q ss_pred cchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCc-------chHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Q 002876 363 DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEK-------LVPLVNIALNFMLTALMQDPNNHVKDTTAWTLG 435 (872)
Q Consensus 363 ~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~-------~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~ 435 (872)
..+..+.+++.......+...|.++++++++++....... ...+++.+...+.... +..+...+..++.+||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV-SKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH-hcCCchheeeHHHhhh
Confidence 3444455544433223456889999999999876321111 1233344444444444 4556667788888888
Q ss_pred HhhhhccCCCCCCcccCccchHHHHHHHHHhcc-C---ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHH
Q 002876 436 RMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-D---VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLT 511 (872)
Q Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~ 511 (872)
++... ..++.+...+. + +..+|..|+++|..+...+. . .+-+.++.
T Consensus 472 N~g~~-----------------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p------~-------~v~~~l~~ 521 (574)
T smart00638 472 NAGHP-----------------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP------R-------KVQEVLLP 521 (574)
T ss_pred ccCCh-----------------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc------h-------HHHHHHHH
Confidence 77663 22233333332 2 46899999999998876542 2 34445555
Q ss_pred hhccCCchhhhhHHHHHHHH
Q 002876 512 VTHREDAGESRLRTAAYETL 531 (872)
Q Consensus 512 ~l~~~~~~~~~v~~~~~~~l 531 (872)
.+.+... ++.+|..|+..+
T Consensus 522 i~~n~~e-~~EvRiaA~~~l 540 (574)
T smart00638 522 IYLNRAE-PPEVRMAAVLVL 540 (574)
T ss_pred HHcCCCC-ChHHHHHHHHHH
Confidence 5555443 678886655543
No 231
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.33 E-value=16 Score=40.73 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=101.7
Q ss_pred hhHHHHHHHhhcCCC-hhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhch
Q 002876 130 PELIGALLSNIHQLP-PHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (872)
Q Consensus 130 ~~l~~~l~~~l~~~~-~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (872)
.+.++.|++...+.. ..-|+.|++.|..+.+.+ .......-+. .+++.+..+-.++++-..++.++..++..-.
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkY-R~~Vga~Gmk----~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKY-REEVGAQGMK----PLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH-HHHHHHcccH----HHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 467777777776553 466888999998888776 2222122233 3444444434588888899998888764321
Q ss_pred --hhccCh------hhH--------HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhH---HHHHHHHHHHH
Q 002876 209 --ANFSND------MER--------DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI---QDIFNITAKAV 269 (872)
Q Consensus 209 --~~~~~~------~~~--------~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~---~~l~~~~~~~~ 269 (872)
...++. +.| ...+..+...+...+..+|..+.+.+..++++.|..+...+ |.=+..+...+
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 111111 011 12456677777788999999999999999999887665433 23334444556
Q ss_pred hcCChhhHHHHHHHHHHHHHH
Q 002876 270 REDEEPVALQAIEFWSSVCDE 290 (872)
Q Consensus 270 ~~~~~~v~~~a~~~~~~l~~~ 290 (872)
.|..+-+|..++-++..+...
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~ 196 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKD 196 (970)
T ss_pred hhhhhhhchhHHHHHHHHHcc
Confidence 777778999999888888764
No 232
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.28 E-value=0.35 Score=52.43 Aligned_cols=187 Identities=16% Similarity=0.118 Sum_probs=107.1
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCC-hHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 002876 38 FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLD-SSVKAQIKSFILKTLSSPAHDARSTASQVV 116 (872)
Q Consensus 38 ~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~-~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l 116 (872)
+.+.|+.++.. .|..+|..-++.+-+++.. ++ +...+.|...+..++.|.|+.+|...-..+
T Consensus 331 i~p~l~kLF~~--~Dr~iR~~LL~~i~~~i~~---------------Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm 393 (690)
T KOG1243|consen 331 IIPVLLKLFKS--PDRQIRLLLLQYIEKYIDH---------------LTKQILNDQIFPHVALGFLDTNATLREQTLKSM 393 (690)
T ss_pred hhhhHHHHhcC--cchHHHHHHHHhHHHHhhh---------------cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHH
Confidence 55555555553 2556666555555554431 33 334446666677777777777777777777
Q ss_pred HHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHH
Q 002876 117 AKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAA 196 (872)
Q Consensus 117 ~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~a 196 (872)
..++....+++.=.+++..+-..-.++...+|-....|+++|.....+- ..-..+...+...+. |+-..-|.++
T Consensus 394 ~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~----~R~~vL~~aftralk--dpf~paR~a~ 467 (690)
T KOG1243|consen 394 AVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALK--DPFVPARKAG 467 (690)
T ss_pred HHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchh----hhccccchhhhhhhc--CCCCCchhhh
Confidence 7666655432223455555555444444556666666666664443111 111122233344455 5656667777
Q ss_pred HHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhH
Q 002876 197 TRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (872)
Q Consensus 197 l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 251 (872)
+..+.....+ +........|++.+.-..-+++..+|..+.+.+........
T Consensus 468 v~~l~at~~~----~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 468 VLALAATQEY----FDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hHHHhhcccc----cchhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 7776664433 33333345788888888888999999998888877655443
No 233
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=8.6 Score=46.52 Aligned_cols=106 Identities=9% Similarity=0.150 Sum_probs=78.1
Q ss_pred HHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhh
Q 002876 178 AVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPY 257 (872)
Q Consensus 178 ~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~ 257 (872)
.+++.+. -.|+..|..|+..+..++......... ...+.......+++.+.+..+|....+.+..++....+.+.||
T Consensus 45 ~I~kkL~--KkD~~TK~KaL~eL~eli~~~~~e~~~-~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 45 IIVKKLL--KRDETTKIKALQELSELIDTSDTEELK-GILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHh--ccChHHHHHHHHhHHHhcccccchHHh-hhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3344444 578899999999999987532211100 0113345566678889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002876 258 IQDIFNITAKAVREDEEPVALQAIEFWSS 286 (872)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~v~~~a~~~~~~ 286 (872)
+..+++.++....|.+..+...|...+..
T Consensus 122 LK~li~~wl~~~~d~~~~vs~aa~~sf~~ 150 (1312)
T KOG0803|consen 122 LKSLIPPWLGGQFDLDYPVSEAAKASFKD 150 (1312)
T ss_pred HHhhhhhhhheecccchHHHHHHHHHHHh
Confidence 99999999888888777776666654443
No 234
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=92.92 E-value=21 Score=40.86 Aligned_cols=127 Identities=18% Similarity=0.230 Sum_probs=82.8
Q ss_pred CchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccc
Q 002876 709 VKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLM 788 (872)
Q Consensus 709 v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 788 (872)
+|..++.+++.++.+.+.-... .+|.+.+-++-. -...+|.+++-+++.+...+ ...+-
T Consensus 947 vra~~vvTlakmcLah~~LaKr----~~P~lvkeLe~~------------~~~aiRnNiV~am~D~C~~Y-----Tam~d 1005 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAKR----LMPMLVKELEYN------------TAHAIRNNIVLAMGDICSSY-----TAMTD 1005 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHhh------------hHHHHhcceeeeehhhHHHH-----HHHHH
Confidence 3445667888888888754444 455566555433 12466766666655554431 11122
Q ss_pred cchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 002876 789 PYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISK 868 (872)
Q Consensus 789 ~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 868 (872)
.|+ +.+...|.| .+.-||+.++.++..+.+ .++.+|-.. +...|+-.+. +.+|+++..|.+-.++|..
T Consensus 1006 ~Yi----P~I~~~L~D--p~~iVRrqt~ilL~rLLq---~~~vKw~G~--Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1006 RYI----PMIAASLCD--PSVIVRRQTIILLARLLQ---FGIVKWNGE--LFIRFMLALL-DANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred Hhh----HHHHHHhcC--chHHHHHHHHHHHHHHHh---hhhhhcchh--hHHHHHHHHc-ccCHHHHHHHHHHHHHHHh
Confidence 333 445556665 578899999999988877 457777776 5667776666 4589999999998888764
No 235
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=92.87 E-value=3.1 Score=37.27 Aligned_cols=128 Identities=18% Similarity=0.201 Sum_probs=80.4
Q ss_pred cchHHHHHHHHHhcc-------------------CChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhc
Q 002876 454 GNCQQIISVLLQSMK-------------------DVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTH 514 (872)
Q Consensus 454 ~~~~~il~~l~~~l~-------------------d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~ 514 (872)
+.++.++|.+...+. |.-.+|..|..++.++.+.+. ..+ .+..++..+...+.
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~------~~~--~~~~~~~~v~~GL~ 76 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCL------SRI--DISEFLDRVEAGLK 76 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTC------SSS---HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHH------HhC--CHHHHHHHHHhhcC
Confidence 455677777765443 123689999999999999763 223 26677888888887
Q ss_pred cCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 002876 515 REDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGS 594 (872)
Q Consensus 515 ~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 594 (872)
+ +..++.-++..+..++...|......++.+.+++-..+..-..... ...+-|...++...++.++..+-..++.
T Consensus 77 D----~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~A-vkQE~Ek~~E~~rs~lr~~~~l~~~i~~ 151 (169)
T PF08623_consen 77 D----EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENA-VKQEIEKQQELIRSVLRAVKALNSKIPG 151 (169)
T ss_dssp S-----HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS--HHHHHHHHHHHHHHHHHHHHH-HSSTS
T ss_pred C----cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCc-ccccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 6 4678888888899999888876666666666666555543322111 1233444456666677777777555543
No 236
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.59 E-value=0.61 Score=42.24 Aligned_cols=92 Identities=16% Similarity=0.224 Sum_probs=73.5
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHH---hc
Q 002876 649 EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALA---IG 725 (872)
Q Consensus 649 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~---~~ 725 (872)
..+|.+...|...+ ...|-.|-.-+.++..+.++.+.|.+++++..+-+.|... +.++...++.++..+... .|
T Consensus 114 ~yLp~F~dGL~e~~-hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~tr--d~ev~~~~Lkvlq~lv~~~~~vG 190 (262)
T KOG3961|consen 114 PYLPLFFDGLAETD-HPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTR--DDEVICRTLKVLQQLVVSVGCVG 190 (262)
T ss_pred HHHHHHhhhhhhcC-CCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhccccc
Confidence 34555666665443 3566777788888888889999999999999999999887 778889999999988876 46
Q ss_pred cchHHhHHHHHHHHHHHH
Q 002876 726 ENFEKYLMYAMPMLQSAA 743 (872)
Q Consensus 726 ~~~~~~l~~il~~l~~~l 743 (872)
..+.||-.+++|.+...-
T Consensus 191 ~aLVPfYRQlLp~~n~~k 208 (262)
T KOG3961|consen 191 AALVPFYRQLLPVLNTFK 208 (262)
T ss_pred hhhhhHHHHhhhhhhhhc
Confidence 889999999999986543
No 237
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.55 E-value=24 Score=40.56 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=73.6
Q ss_pred HHHHhcCC----CChHHHHHHHHHHHHHHHhhcCC------------CCchhHHHHHHHhh----cCCChhHHHHHHHHH
Q 002876 96 FILKTLSS----PAHDARSTASQVVAKVAGIELPH------------KQWPELIGALLSNI----HQLPPHTKQATLETL 155 (872)
Q Consensus 96 ~ll~~l~~----~~~~vr~~~a~~l~~i~~~~~~~------------~~~~~l~~~l~~~l----~~~~~~~r~~al~~l 155 (872)
.+..++.+ .++.++..+..+++.++...... ..-..+++.+.+.+ ...+...+..+|++|
T Consensus 435 ~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 514 (618)
T PF01347_consen 435 ELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKAL 514 (618)
T ss_dssp HHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHh
Confidence 44445443 35789999999999888765432 11123333343333 344567778888888
Q ss_pred HHhhhhccccccchhhHHHHHHHHHhcccCC-CCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHH
Q 002876 156 GYICEEVSSDAVEQDHVNKILTAVVQGMNAS-ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVK 234 (872)
Q Consensus 156 ~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 234 (872)
+.+- .+..++.+...+... +.+..+|.+|+.+|..+....++. .++.++++..+. ..+.+
T Consensus 515 gN~g------------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-----v~~~l~~I~~n~--~e~~E 575 (618)
T PF01347_consen 515 GNLG------------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-----VREILLPIFMNT--TEDPE 575 (618)
T ss_dssp HHHT-------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-----HHHHHHHHHH-T--TS-HH
T ss_pred hccC------------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-----HHHHHHHHhcCC--CCChh
Confidence 7551 233445565656532 457899999999999765433321 123344443332 35788
Q ss_pred HHHHHHHHHHH
Q 002876 235 IRQAAFECLVA 245 (872)
Q Consensus 235 ~r~~~~~~l~~ 245 (872)
+|.+|+..|..
T Consensus 576 vRiaA~~~lm~ 586 (618)
T PF01347_consen 576 VRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999876654
No 238
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.37 E-value=15 Score=37.70 Aligned_cols=187 Identities=11% Similarity=0.153 Sum_probs=112.0
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHhhcCC----------CCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc-
Q 002876 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPH----------KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS- 163 (872)
Q Consensus 95 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~----------~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~- 163 (872)
..|+..|..-+-+.|+.++++++.+.+...+. .+||+++..|+.+-..++..... -.++...++.-.
T Consensus 79 ~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~--g~mlRec~k~e~l 156 (335)
T PF08569_consen 79 YLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNC--GDMLRECIKHESL 156 (335)
T ss_dssp HHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHH--HHHHHHHTTSHHH
T ss_pred HHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchH--HHHHHHHHhhHHH
Confidence 34555555556667777777777776654321 35688888888888766532211 112222221100
Q ss_pred -ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccC--hhhHHHHHHHHHHhhcCCCHHHHHHHH
Q 002876 164 -SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSN--DMERDYIMRVVCEATLSPEVKIRQAAF 240 (872)
Q Consensus 164 -~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~r~~~~ 240 (872)
.-.+..+.+. .+.+.+. .++-++-.-|..++..++..-+..... ....+.++.....++.+++--.|+.++
T Consensus 157 ~~~iL~~~~f~----~ff~~~~--~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 157 AKIILYSECFW----KFFKYVQ--LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp HHHHHTSGGGG----GHHHHTT--SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred HHHHhCcHHHH----HHHHHhc--CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 0011112222 2445555 678899889999888876432211100 112356788888889999999999999
Q ss_pred HHHHHHHHH--hHHhhHhhHH--HHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 002876 241 ECLVAISST--YYEKLAPYIQ--DIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (872)
Q Consensus 241 ~~l~~l~~~--~~~~~~~~~~--~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (872)
+.|+.++.. +...+..|+. .-+..+...+++....++..|..++...+.
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 999999853 4455566653 567777888899999999999998887775
No 239
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.35 E-value=25 Score=40.37 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=46.6
Q ss_pred hchHHHHHhhhcCc---chhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 002876 366 PLVMPFVEENITKQ---EWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (872)
Q Consensus 366 ~~l~~~l~~~~~~~---~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
|..++.+...+.+. ...+|.+|+.++..++..+. ....+.+++.+.. ..+++.+|-+|...+-. ..|
T Consensus 520 ~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~----~~v~~~l~~I~~n---~~e~~EvRiaA~~~lm~---~~P 589 (618)
T PF01347_consen 520 PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP----EKVREILLPIFMN---TTEDPEVRIAAYLILMR---CNP 589 (618)
T ss_dssp GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H----HHHHHHHHHHHH----TTS-HHHHHHHHHHHHH---T--
T ss_pred chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc----HHHHHHHHHHhcC---CCCChhHHHHHHHHHHh---cCC
Confidence 34455555544443 46789999988887755441 1112333333332 34678899999776553 222
Q ss_pred CCCCCCcccCccchHHHHHHHHHhccC--ChhHHHHHH
Q 002876 443 GSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKAC 478 (872)
Q Consensus 443 ~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~ 478 (872)
. . .++..+...+.. +..|.....
T Consensus 590 ~---------~----~~l~~i~~~l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 590 S---------P----SVLQRIAQSLWNEPSNQVASFVY 614 (618)
T ss_dssp ----------H----HHHHHHHHHHTT-S-HHHHHHHH
T ss_pred C---------H----HHHHHHHHHHhhCchHHHHHHHH
Confidence 1 1 555666666653 455554433
No 240
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.31 E-value=13 Score=36.92 Aligned_cols=297 Identities=10% Similarity=0.103 Sum_probs=149.0
Q ss_pred CCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHhHHhhHhhHH-HHHH
Q 002876 187 ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT--LSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFN 263 (872)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~--~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~-~l~~ 263 (872)
.++..+-..++.++......-++.++-+. ++++..++ +.++.++--..+.++...+-.+...-..+++ .+++
T Consensus 118 ~~~~~~l~ksL~al~~lt~~qpdl~da~g-----~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQPDLFDAEA-----MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCCcchhcccc-----HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 67778888899999988776666555332 44444444 3456677777777777665544322223343 5677
Q ss_pred HHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCc---hHhHHHhhhhh-HHHHHHHHHhcccCCccc
Q 002876 264 ITAKAVREDEE-PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIP---CFYFIKHALPV-LVPLLLETLLKQEEDQDQ 338 (872)
Q Consensus 264 ~~~~~~~~~~~-~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~-l~~~l~~~l~~~~~d~~~ 338 (872)
++...+..... .+...+...+..+.- +++..++ .+++.+..... ++..|.+.+...-+ ++
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~-------------dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d-p~- 257 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLT-------------DDDIRVVFGQAHGHARTIAKEGILTALTEALQAGID-PD- 257 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcC-------------CCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC-cc-
Confidence 77666653322 233333333333321 1122222 12343333322 24445554432211 11
Q ss_pred CCccchHhHHHHHHHHHH------HHHc-CCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH----
Q 002876 339 DEGAWNIAMAGGTCLGLV------ARTV-GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV---- 407 (872)
Q Consensus 339 ~~~~~~~r~~a~~~l~~l------~~~~-~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~---- 407 (872)
.-..+..+|+.+ ++.. ...-+..++..+...-.+.+-..-..++..+..++-. +..+..+
T Consensus 258 ------~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~---DsvKs~IV~~g 328 (461)
T KOG4199|consen 258 ------SLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS---DSVKSTIVEKG 328 (461)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC---CchHHHHHHhc
Confidence 111222333332 2222 1122344444443321112222234455566666543 3333332
Q ss_pred --HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccch-HHHHHHHHHhccCC---hhHHHHHHHHH
Q 002876 408 --NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC-QQIISVLLQSMKDV---PNVAEKACGAL 481 (872)
Q Consensus 408 --~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d~---~~v~~~a~~al 481 (872)
+.++..+.... .+|.|...++.+++-++-..|+. ...++ ...-...++.|+-. ..|+.++|+.+
T Consensus 329 g~~~ii~l~~~h~---~~p~Vi~~~~a~i~~l~LR~pdh-------sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~I 398 (461)
T KOG4199|consen 329 GLDKIITLALRHS---DDPLVIQEVMAIISILCLRSPDH-------SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMI 398 (461)
T ss_pred ChHHHHHHHHHcC---CChHHHHHHHHHHHHHHhcCcch-------HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 34444444433 67889999999999888876521 11111 12334566777653 47899999999
Q ss_pred HHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHH
Q 002876 482 YFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETL 531 (872)
Q Consensus 482 ~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l 531 (872)
.+++..- ...-.+.+..=++.|+..-... ++..+..+-.+|
T Consensus 399 RNiv~rs------~~~~~~~l~~GiE~Li~~A~~~---h~tce~~akaAL 439 (461)
T KOG4199|consen 399 RNIVVRS------AENRTILLANGIEKLIRTAKAN---HETCEAAAKAAL 439 (461)
T ss_pred HHHHHhh------hhccchHHhccHHHHHHHHHhc---CccHHHHHHHHH
Confidence 9998753 3344456665566665544332 344443333443
No 241
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=92.31 E-value=1.3 Score=45.55 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhc---------CCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Q 002876 628 AMLAIGALAYATGQDFLKYMPEFYKYVEMGLQ---------NFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLK 698 (872)
Q Consensus 628 a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~---------~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 698 (872)
.+.++.++...-.-.+.+|+..++|.++.++- ..+.+.+|..|..+++.+++.++..-....+.++..+.+
T Consensus 237 lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k 316 (343)
T cd08050 237 LMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLK 316 (343)
T ss_pred HHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 33344444433344688999999999998762 135689999999999999999987655566778888888
Q ss_pred HccCCCCCCCCchhHHHHHHH
Q 002876 699 DLSSNQLHRSVKPPIFSCFGD 719 (872)
Q Consensus 699 ~l~~~~~~~~v~~~~~~~l~~ 719 (872)
.+.++......+-.++..++.
T Consensus 317 ~l~d~~~~~~~~YGAi~GL~~ 337 (343)
T cd08050 317 ALLDPKKPLTTHYGAIVGLSA 337 (343)
T ss_pred HHcCCCCCcchhhHHHHHHHH
Confidence 888774333333334444433
No 242
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=2.6 Score=42.89 Aligned_cols=133 Identities=8% Similarity=0.115 Sum_probs=101.6
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHH-hcccccc
Q 002876 610 MGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRAL-EDKILPY 688 (872)
Q Consensus 610 ~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~ 688 (872)
+..++.-+.+.+..+|..|+.-+..+..+-.......+..+++.+.....+ ++..+|...+.++..++... ++.+.|+
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D-~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILD-DDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcC-ccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 344555667788889999999988888775555555556666666665554 45589999999998866654 4557899
Q ss_pred HHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhh
Q 002876 689 CDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAEL 745 (872)
Q Consensus 689 ~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~ 745 (872)
+.-+++.+...+... .++++...+..+..++..+++.|..+...+++.+...++.
T Consensus 139 ~~l~~~yi~~AMThi--t~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~ 193 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHI--TPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISK 193 (393)
T ss_pred HHHHHHHHHHHHhhc--cHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 999999999888877 6789999999999999999988887777777666665543
No 243
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.82 E-value=0.66 Score=42.04 Aligned_cols=94 Identities=18% Similarity=0.269 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHH---hcc
Q 002876 608 QMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRAL---EDK 684 (872)
Q Consensus 608 ~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~---~~~ 684 (872)
..++.+...|...+...+--|-.-+..+..+.|+.+.|.+++++..|..++...+ .++...++.++..++... |..
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd-~ev~~~~Lkvlq~lv~~~~~vG~a 192 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRD-DEVICRTLKVLQQLVVSVGCVGAA 192 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhccccchh
Confidence 4555666666665555566666677788888899999999999999999998654 488888999988887754 478
Q ss_pred ccccHHHHHHHHHHHccCC
Q 002876 685 ILPYCDGIMTQLLKDLSSN 703 (872)
Q Consensus 685 ~~~~~~~i~~~l~~~l~~~ 703 (872)
+.||..++++.+ +.+.+.
T Consensus 193 LVPfYRQlLp~~-n~~k~~ 210 (262)
T KOG3961|consen 193 LVPFYRQLLPVL-NTFKNS 210 (262)
T ss_pred hhhHHHHhhhhh-hhhccc
Confidence 899999999876 344443
No 244
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=91.58 E-value=6 Score=47.17 Aligned_cols=217 Identities=15% Similarity=0.149 Sum_probs=117.3
Q ss_pred chhhHHHHHHHHHHHHhh--hhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHH---HHHHHH
Q 002876 623 TAHEEAMLAIGALAYATG--QDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDG---IMTQLL 697 (872)
Q Consensus 623 ~~~~~a~~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---i~~~l~ 697 (872)
.+|..+..+|.++...-- +...--...+|..++..|....+ ++.+....+|..|....+..++..+.. +.....
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe-eL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE-ELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH-HHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 478888888888753221 22223345677778877765443 666666666666665555444443332 222222
Q ss_pred HHccCCCCCCCCchhHHHHHHHHHHHhccchHHh--HHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHh
Q 002876 698 KDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKY--LMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIF 775 (872)
Q Consensus 698 ~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~--l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~ 775 (872)
-.+.+. .......++.+|=++...+.++=..+ ++..+-+|...|.-.-. .+. ..+++.-++|+
T Consensus 445 ~al~~~--kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~q-----------s~t--LaIIEsaGGIL 509 (2195)
T KOG2122|consen 445 CALRNK--KESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQ-----------SNT--LAIIESAGGIL 509 (2195)
T ss_pred HHHHhc--ccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCC-----------cch--hhhhhcCccHH
Confidence 233433 22333556666666666554443332 34556666666543210 011 13445555665
Q ss_pred hcccCCCcccccccc---h--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcC
Q 002876 776 QGFKGSPKTQLLMPY---A--PHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSS 850 (872)
Q Consensus 776 ~~~~~~~~~~~~~~~---~--~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~ 850 (872)
..+... ...-.+| + ..++..|++.|+. .+-.+...++++|.+|......+-+ ++-+.. -..+|..+.++
T Consensus 510 RNVSS~--IAt~E~yRQILR~~NCLq~LLQ~LKS--~SLTiVSNaCGTLWNLSAR~p~DQq-~LwD~g-Av~mLrnLIhS 583 (2195)
T KOG2122|consen 510 RNVSSL--IATCEDYRQILRRHNCLQTLLQHLKS--HSLTIVSNACGTLWNLSARSPEDQQ-MLWDDG-AVPMLRNLIHS 583 (2195)
T ss_pred HHHHhH--hhccchHHHHHHHhhHHHHHHHHhhh--cceEEeecchhhhhhhhcCCHHHHH-HHHhcc-cHHHHHHHHhh
Confidence 554321 1112234 1 2578888888884 5667889999999999988754433 322222 34455556666
Q ss_pred CChhHHHHHHH
Q 002876 851 DDHMIKESAEW 861 (872)
Q Consensus 851 ~~~~~~~~~~~ 861 (872)
+..++-.-...
T Consensus 584 KhkMIa~GSaa 594 (2195)
T KOG2122|consen 584 KHKMIAMGSAA 594 (2195)
T ss_pred hhhhhhhhHHH
Confidence 66554443333
No 245
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=91.27 E-value=20 Score=36.99 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=90.5
Q ss_pred hchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHh----ccCCcHHHHHHHHHHHHHhhhh
Q 002876 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTAL----MQDPNNHVKDTTAWTLGRMFEF 440 (872)
Q Consensus 366 ~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l----~~d~~~~vr~~a~~~l~~l~~~ 440 (872)
|.++.++..++.|.+....-++..++|.++..-+ .....+ .+++..++..+ .-|.+-+++.+++.++.++..-
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~--~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD--ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 5578888899999888888889999999887532 111111 44555555555 2356778888999999887763
Q ss_pred ccCCCCCCcccCccch-HHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCch---hHHHHHHHHHHhhcc
Q 002876 441 LHGSTLETPIINQGNC-QQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTP---FFQEIVQALLTVTHR 515 (872)
Q Consensus 441 ~~~~~~~~~~~~~~~~-~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~---~l~~i~~~l~~~l~~ 515 (872)
.+. ...++ ..+.+.++..++- .|+|...-..++..+.+.- +.+.- .-+.+++.+.....+
T Consensus 392 v~n--------ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~q-------e~~a~eL~kn~~l~ekLv~Wsks 456 (604)
T KOG4500|consen 392 VSN--------KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ-------EYIACELAKNPELFEKLVDWSKS 456 (604)
T ss_pred CCc--------hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhch-------HHHHHHHhcCHHHHHHHHHhhhC
Confidence 321 11122 2345566666664 5777666666666655432 10110 114566777777665
Q ss_pred CCchhhhhHHHHHHHHHHHHHc
Q 002876 516 EDAGESRLRTAAYETLNEVVRC 537 (872)
Q Consensus 516 ~~~~~~~v~~~~~~~l~~l~~~ 537 (872)
++ ...+.-.....+..+++.
T Consensus 457 ~D--~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 457 PD--FAGVAGESNRLLLGLIKH 476 (604)
T ss_pred Cc--cchhhhhhhHHHHHHHHh
Confidence 54 222433445555556655
No 246
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.21 E-value=22 Score=40.38 Aligned_cols=125 Identities=10% Similarity=0.058 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcch--hhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHH
Q 002876 577 IQGLLCGCLQVIIQKLGSSEQT--KYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYV 654 (872)
Q Consensus 577 ~~~~~~~~l~~l~~~l~~~~~~--~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l 654 (872)
++..++-+++.++......... ..+...+.+.+...+....+..+.+.+.-++.+||++.. +..++.+
T Consensus 413 l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l 482 (574)
T smart00638 413 LRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVL 482 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHH
Confidence 4555666777777655433211 112234455555555555554555555566777776642 2222222
Q ss_pred Hhhhc--CCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHH
Q 002876 655 EMGLQ--NFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFG 718 (872)
Q Consensus 655 ~~~l~--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~ 718 (872)
...+. ......+|..|++++..++...+ ..+.+.++.++.+...+.++|..|+..+-
T Consensus 483 ~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p-------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 483 EPYLEGAEPLSTFIRLAAILALRNLAKRDP-------RKVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHHhCc-------hHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 22222 12345789999999998876655 35667777778777667788887776553
No 247
>PF05536 Neurochondrin: Neurochondrin
Probab=91.15 E-value=29 Score=38.61 Aligned_cols=247 Identities=13% Similarity=0.101 Sum_probs=135.3
Q ss_pred HHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchH--HHHHH-HHHHHHHhccC-------CcHHHHHHHHHHHHHhhh
Q 002876 370 PFVEENITKQEWRQREAATYAFGSILEGPSPEKLVP--LVNIA-LNFMLTALMQD-------PNNHVKDTTAWTLGRMFE 439 (872)
Q Consensus 370 ~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~--~~~~i-~~~l~~~l~~d-------~~~~vr~~a~~~l~~l~~ 439 (872)
..+...+.+.+-..|.+++..+..++.+........ ....+ .+++-..| .. +....+.-|...+..++.
T Consensus 8 ~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL-~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 8 EKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLL-RTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHh-cCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 334455555556789999999988887642111111 11111 12333344 22 234456666777777776
Q ss_pred hccCCCCCCcccCccchHHHHHHHHHhccC-Ch-hHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCC
Q 002876 440 FLHGSTLETPIINQGNCQQIISVLLQSMKD-VP-NVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED 517 (872)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~-~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~ 517 (872)
. + .....+-+-.-+|.+++.+.. .. .+...+..+|..++.. ++. ...+.. ...++.+...+.+.
T Consensus 87 ~-~------~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G---~~aLl~--~g~v~~L~ei~~~~- 152 (543)
T PF05536_consen 87 D-P------ELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEG---AKALLE--SGAVPALCEIIPNQ- 152 (543)
T ss_pred C-h------hhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHh---HHHHHh--cCCHHHHHHHHHhC-
Confidence 1 1 112344555678888888874 33 6777888888888732 211 111111 12344555555442
Q ss_pred chhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 002876 518 AGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQ 597 (872)
Q Consensus 518 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~ 597 (872)
+.....++..+..+....+....+.....+..++..+..... ...+. .+..++..++.+....+....
T Consensus 153 ---~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs----~~~~~-----~kfell~~L~~~L~~~~~~~~ 220 (543)
T PF05536_consen 153 ---SFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFS----SFHGE-----DKFELLEFLSAFLPRSPILPL 220 (543)
T ss_pred ---cchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHH----hhccc-----hHHHHHHHHHHhcCcCCcccc
Confidence 345667888888877776633222222223333333333221 01111 123467777777666531100
Q ss_pred hhhHhhHhHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHhhhhh
Q 002876 598 TKYVFMQYADQMMGLFLRVFAIR-SATAHEEAMLAIGALAYATGQDF 643 (872)
Q Consensus 598 ~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~ 643 (872)
....-......+...+..++++. .+.-|..++.+.+.+....|.+.
T Consensus 221 ~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 221 ESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEW 267 (543)
T ss_pred ccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHh
Confidence 00112346778888888999886 45678899999999999888654
No 248
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.94 E-value=11 Score=45.81 Aligned_cols=240 Identities=15% Similarity=0.098 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhh-hHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhcc
Q 002876 606 ADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKY-MPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDK 684 (872)
Q Consensus 606 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~ 684 (872)
.+.-+..+++-+...+...+..|+.-++.+........... ++.+...+.+... +.+..||.....++..+...++..
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~-d~~~~VR~~t~~v~s~l~t~lkk~ 117 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLII-DEDRTVRLLTHDVFSKLLTKLKKK 117 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666777788889999999999887665332222 3322222333333 456799999999999999999999
Q ss_pred ccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHH--hccchHHhHHHHHHHHHHHHhhccC-C--C--CCCccHH
Q 002876 685 ILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALA--IGENFEKYLMYAMPMLQSAAELSVH-T--S--GVDDDMT 757 (872)
Q Consensus 685 ~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~--~~~~~~~~l~~il~~l~~~l~~~~~-~--~--~~d~~~~ 757 (872)
+.||+..+++..+-...+. ...+...|...+...... -......+-+++.+.+.+.+-.... + + ....++.
T Consensus 118 lsp~LK~li~~wl~~~~d~--~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~ 195 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQFDL--DYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEEL 195 (1312)
T ss_pred hhHHHHhhhhhhhheeccc--chHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHH
Confidence 9999999999987776666 455555555555544321 1111223444556666555333221 1 1 0111111
Q ss_pred H-HHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHH--HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccc
Q 002876 758 E-YTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQ--FLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLI 834 (872)
Q Consensus 758 ~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~--~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~ 834 (872)
| ....+....+.++..++...+.........+-...+.. ..-..+. ...++++.+.+.++..+++.....+.+.-
T Consensus 196 E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~--~k~~~i~~~~~ell~~l~~~i~~~~~~~~ 273 (1312)
T KOG0803|consen 196 ESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLK--SKSPSIKVALLELLLSLIDDILNRVMESE 273 (1312)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhc--CCCcchhHHHHHHHHHHHhhhHHhcchhh
Confidence 2 23455556666666666543322111101111111111 1122223 24667888888888887777755433332
Q ss_pred cCchHHHHHHHHHhcCCC
Q 002876 835 QQSVSSKDFLNECLSSDD 852 (872)
Q Consensus 835 ~~~~~v~~~l~~~~~~~~ 852 (872)
.. .+...+.....+.+
T Consensus 274 ~~--~l~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 274 KN--YLKPVLLGSIDSLD 289 (1312)
T ss_pred hh--HhhHHHHccccccc
Confidence 22 35555555554544
No 249
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.92 E-value=8.9 Score=39.25 Aligned_cols=92 Identities=16% Similarity=0.119 Sum_probs=53.4
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcC---CChhhHHHHHHHHHHHHHHHHhccc
Q 002876 609 MMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQN---FEDYQVCAITVGVVGDLCRALEDKI 685 (872)
Q Consensus 609 i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~---~~~~~v~~~a~~~l~~l~~~~~~~~ 685 (872)
.+..++..++.++..+...+...++.++...+.........+++.+++.+.+ .++.+....++.+++.+.+.-.-..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 5666777888888889999999999998877665544334555555555543 2233556788888888875432111
Q ss_pred cccHHHHHHHHHHHc
Q 002876 686 LPYCDGIMTQLLKDL 700 (872)
Q Consensus 686 ~~~~~~i~~~l~~~l 700 (872)
.-+-.+.++.+...+
T Consensus 186 ~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 186 VFWKSNGVSPLFDIL 200 (312)
T ss_dssp HHHTHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHH
Confidence 111155666777766
No 250
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=90.68 E-value=16 Score=35.00 Aligned_cols=119 Identities=19% Similarity=0.254 Sum_probs=71.6
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 002876 40 LSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKV 119 (872)
Q Consensus 40 ~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i 119 (872)
..+.++|.+.+.+.+-|+-|...|++..... . ...+.+.+.++.....+..+-+++..
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~------------------~----i~~i~ka~~d~s~llkhe~ay~LgQ~ 63 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLGPA------------------A----IKAITKAFIDDSALLKHELAYVLGQM 63 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCChH------------------H----HHHHHHhcccchhhhccchhhhhhhh
Confidence 3455667766677888888888888866521 1 33455666666555666666555322
Q ss_pred HHhhcCCCCchhHHHHHHHhhcCC--ChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHH
Q 002876 120 AGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAAT 197 (872)
Q Consensus 120 ~~~~~~~~~~~~l~~~l~~~l~~~--~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al 197 (872)
...+-++.+...+.+. .+.+|+.|..+|+.+.. ++ +++.+.+..+ |+-..|+....
T Consensus 64 --------~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~---~~---------~~~~l~k~~~--dp~~~v~ETc~ 121 (289)
T KOG0567|consen 64 --------QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD---PE---------SLEILTKYIK--DPCKEVRETCE 121 (289)
T ss_pred --------ccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc---hh---------hHHHHHHHhc--CCccccchHHH
Confidence 2245667777777654 56788888888876642 22 2233333333 67667776554
Q ss_pred HHHHH
Q 002876 198 RALYN 202 (872)
Q Consensus 198 ~~l~~ 202 (872)
.++..
T Consensus 122 lAi~r 126 (289)
T KOG0567|consen 122 LAIKR 126 (289)
T ss_pred HHHHH
Confidence 44444
No 251
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.67 E-value=49 Score=40.48 Aligned_cols=148 Identities=13% Similarity=0.084 Sum_probs=84.4
Q ss_pred HHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhcc-chHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHH
Q 002876 690 DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE-NFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGIL 768 (872)
Q Consensus 690 ~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~-~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~ 768 (872)
+.++..+.....++. .+.+|.+++..+........- ......+.+-..+...+.+. . ..+|+-+.
T Consensus 1525 ~e~l~~l~~~~~~~~-tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~------------~-i~vre~Aa 1590 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSS-TWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDD------------Q-IEVREEAA 1590 (1710)
T ss_pred HHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcch------------H-HHHHHHHH
Confidence 455555554333333 788888888888776654221 34456677777777777543 1 35888999
Q ss_pred HHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHh
Q 002876 769 EAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECL 848 (872)
Q Consensus 769 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~ 848 (872)
.++.+++.+-... +.+ ...+...........+....-.|+--+|.++-.++ |.-+. |++..|....
T Consensus 1591 ~~Lsgl~~~s~~~-----~~~---~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafP-----y~vP~-wip~~L~~Ls 1656 (1710)
T KOG1851|consen 1591 KCLSGLLQGSKFQ-----FVS---DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFP-----YVVPL-WIPKPLMNLS 1656 (1710)
T ss_pred HHHHHHHhccccc-----cch---HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhcc-----ccchh-hhHHHHHHHH
Confidence 9999998862221 111 22222222222222344556677788888888874 43333 5666655433
Q ss_pred --cCCChhHHHHHHHHHHH
Q 002876 849 --SSDDHMIKESAEWAKLA 865 (872)
Q Consensus 849 --~~~~~~~~~~~~~~~~~ 865 (872)
..+...+++.+.-+...
T Consensus 1657 ~fa~e~~~i~~tvkktvse 1675 (1710)
T KOG1851|consen 1657 SFARESAAIKQTVKKTVSE 1675 (1710)
T ss_pred hhcCCchHHHHHHHHHHHH
Confidence 12335566666555443
No 252
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=90.44 E-value=3.5 Score=32.29 Aligned_cols=68 Identities=18% Similarity=0.324 Sum_probs=54.6
Q ss_pred HHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 002876 218 DYIMRVVCEA-TLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWS 285 (872)
Q Consensus 218 ~~il~~l~~~-~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~ 285 (872)
..++..+... .+.++.++|...++|+..++...++.+..-++.++..+-....+.++++...|.+.+.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3455544444 3456899999999999999999999999889999998888888888888888876643
No 253
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.39 E-value=0.62 Score=30.27 Aligned_cols=29 Identities=24% Similarity=0.570 Sum_probs=26.5
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 002876 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMF 438 (872)
Q Consensus 409 ~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~ 438 (872)
..+|.+...+ .++++.++..|+|++++++
T Consensus 12 g~i~~Lv~ll-~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLL-KSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHT-TSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence 4688999999 9999999999999999886
No 254
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=90.06 E-value=37 Score=38.14 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=64.6
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHH--HHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchh-
Q 002876 133 IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKI--LTAVVQGMNASESNNDVRLAATRALYNALGFAQA- 209 (872)
Q Consensus 133 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i--~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~- 209 (872)
++..+..+.++++.+.-.|.--+..+|..- ... +....++ ++.++..+. +.+.+|+..|+.++.+++.--..
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd--~~i-k~~vrqlggI~kLv~Ll~--~~~~evq~~acgaLRNLvf~~~~~ 309 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGD--NKI-KSRVRQLGGIPKLVALLD--HRNDEVQRQACGALRNLVFGKSTD 309 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhh--HHH-HHHHHHhccHHHHHHHhc--CCcHHHHHHHHHHHHhhhcccCCc
Confidence 455566666777777766666666666542 111 2222222 456677777 88999999999999998732111
Q ss_pred -hccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 002876 210 -NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (872)
Q Consensus 210 -~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 249 (872)
+.....+.+.+...+..+-...|.++|+.+...|..+-++
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 1110001122222222222346788888888777776654
No 255
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.76 E-value=28 Score=36.35 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHH
Q 002876 426 VKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQE 504 (872)
Q Consensus 426 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~ 504 (872)
.-..|...+-++++...-+ ..-.-..++..++++|+. +...-......|..+.- +.+ ++..+ --..
T Consensus 279 LLrva~ylLlNlAed~~~E-------lKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~e---NK~~M--~~~~ 345 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVE-------LKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDE---NKIVM--EQNG 345 (791)
T ss_pred HHHHHHHHHHHHhhhhhHH-------HHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hcc---chHHH--Hhcc
Confidence 3345566666677755311 112234677778888873 54443333333333322 111 12111 2346
Q ss_pred HHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHH
Q 002876 505 IVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELH 558 (872)
Q Consensus 505 i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 558 (872)
++..+.+.+... ++.++...+..+-.+.-..|-........++|.+...+.
T Consensus 346 iveKL~klfp~~---h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~ 396 (791)
T KOG1222|consen 346 IVEKLLKLFPIQ---HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLD 396 (791)
T ss_pred HHHHHHHhcCCC---CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhC
Confidence 788888888665 567777766666665555554444445667777776663
No 256
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=89.73 E-value=3.1 Score=36.83 Aligned_cols=65 Identities=14% Similarity=0.092 Sum_probs=43.0
Q ss_pred HHHHHHhccccchhhHHHHHHHHHH-HHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002876 612 LFLRVFAIRSATAHEEAMLAIGALA-YATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGD 676 (872)
Q Consensus 612 ~l~~~l~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~ 676 (872)
.+.+++-+........|+..+..+. ...|+-+.|+++.++|.+.+.|.++.+.++....+.+-+.
T Consensus 46 eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a 111 (174)
T PF04510_consen 46 ELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGA 111 (174)
T ss_pred hHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHH
Confidence 3334443333334467888888777 5567778899999999999999887655555444444333
No 257
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.52 E-value=14 Score=34.26 Aligned_cols=80 Identities=18% Similarity=0.114 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhh
Q 002876 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH 171 (872)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~ 171 (872)
...+.+++...+++..+|..+.+++..+.+..+- +=.+.+|.++.+..|+++.+|..|...+..+.+.. +..+....
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~-~s~v~~~~ 84 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH-ESLVESRY 84 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh-HHHHHHHH
Confidence 3445688888899999999999999999986542 34578999999999999999999999999998876 55443333
Q ss_pred HHH
Q 002876 172 VNK 174 (872)
Q Consensus 172 ~~~ 174 (872)
.+.
T Consensus 85 ~~g 87 (187)
T PF12830_consen 85 SEG 87 (187)
T ss_pred HHH
Confidence 333
No 258
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.43 E-value=60 Score=39.68 Aligned_cols=358 Identities=13% Similarity=0.107 Sum_probs=178.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcCCCCch-----hHHHHHHHhh---cCC-Ch-hH-HHHHHHHHHHhhhhc--c-ccc
Q 002876 101 LSSPAHDARSTASQVVAKVAGIELPHKQWP-----ELIGALLSNI---HQL-PP-HT-KQATLETLGYICEEV--S-SDA 166 (872)
Q Consensus 101 l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~-----~l~~~l~~~l---~~~-~~-~~-r~~al~~l~~i~~~~--~-~~~ 166 (872)
|.++|..||--.+-|++.|.+.+.|+..++ +++..++..+ .+. ++ .. +..-+..+..+.-.+ . ++
T Consensus 59 L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d- 137 (1266)
T KOG1525|consen 59 LKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED- 137 (1266)
T ss_pred hcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc-
Confidence 678899999999999999999988754442 3333333222 222 22 22 223344444333111 0 11
Q ss_pred cchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 002876 167 VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAI 246 (872)
Q Consensus 167 l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l 246 (872)
.+..+..++.++....+. +-...|-. -+..+..++.- ++ .....++.+++.-+-.+..+....|...=..+
T Consensus 138 -~~e~~~~~f~~f~d~~~~-~~~~~v~~-~~~i~~~li~e----~d--~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~l 208 (1266)
T KOG1525|consen 138 -CQELVHELFRTFFDLARK-GHPKKVFN-MLDIAIMLITE----ED--TVQSELLDVLLENLVKPGRDTIKEADKLASDL 208 (1266)
T ss_pred -hHHHHHHHHHHHHHHHhc-cccHHHHH-HHHHHHHHHHh----hc--cchHHHHHHHHHHhccCCCCccHHHHHHHHHH
Confidence 134456666666666653 12222222 23333332211 11 11245666665544444455566666666666
Q ss_pred HHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHH
Q 002876 247 SSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLL 326 (872)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 326 (872)
+...+..+.+.+...+.-.+..-.+....++....+.+..+. ....+.+..++|.+.
T Consensus 209 i~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~-----------------------~~~p~ll~~vip~l~ 265 (1266)
T KOG1525|consen 209 IERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELW-----------------------RIAPQLLLAVIPQLE 265 (1266)
T ss_pred HHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHH-----------------------HhhHHHHHHHHHHHH
Confidence 666666555555444443322211111111211122222211 233455566777777
Q ss_pred HHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCC---cchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcc
Q 002876 327 ETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL 403 (872)
Q Consensus 327 ~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~ 403 (872)
..+...+ -.+|..|...++.+....+. ...+.+.......+.|....+|.+++.....+.-+. ...
T Consensus 266 ~eL~se~---------~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~--~~~ 334 (1266)
T KOG1525|consen 266 FELLSEQ---------EEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNN--PSI 334 (1266)
T ss_pred HHHhcch---------HHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcC--chh
Confidence 7665311 15688777777766543221 334556655566677888889998886665544332 111
Q ss_pred hHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHH
Q 002876 404 VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALY 482 (872)
Q Consensus 404 ~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~ 482 (872)
... ..+...+- . .|.++.+|.....+++.... ..+.-.+.+.++..+...+.| ..+||..|...|.
T Consensus 335 ~~~-~~~~~~l~--~-~~~D~~~rir~~v~i~~~~v---------~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~La 401 (1266)
T KOG1525|consen 335 AKA-STILLALR--E-RDLDEDVRVRTQVVIVACDV---------MKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLA 401 (1266)
T ss_pred hhH-HHHHHHHH--h-hcCChhhhheeeEEEEEeeh---------hHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 111 11122222 2 34455555433222221111 012234445577777777777 6899999999999
Q ss_pred HHHHh-cccCCCCCCCCchhHHHHHHHHHHhhcc
Q 002876 483 FLAQG-FEDAISPSSPLTPFFQEIVQALLTVTHR 515 (872)
Q Consensus 483 ~l~~~-~~~~~~~~~~l~~~l~~i~~~l~~~l~~ 515 (872)
.+-.+ +...........+-+..|-..++..+-.
T Consensus 402 qlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~ 435 (1266)
T KOG1525|consen 402 QLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYE 435 (1266)
T ss_pred HHHHHHHHhhccCcccccccccccchhHHhhHhh
Confidence 88774 1111112344445555555555555543
No 259
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.31 E-value=10 Score=33.15 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH--HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhc
Q 002876 606 ADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP--EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALED 683 (872)
Q Consensus 606 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 683 (872)
....+..+.+-++++++.+.-.|+..|..+++.+|..|...+. .++..+.+.+.+..+..|+..++.++......++.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3456667777778888889999999999999999998876553 47788888776666778999999999999988864
No 260
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=88.74 E-value=12 Score=32.87 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH--HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhc
Q 002876 606 ADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP--EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALED 683 (872)
Q Consensus 606 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 683 (872)
....+..+..-+++.++.+.-.|+..+..+++.+|..|...+. .++..|.+.+....+..|+...+.++......++.
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3456667777778888889999999999999999998886553 48888888887656779999999999999888863
No 261
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.40 E-value=6.4 Score=36.54 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 002876 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS 248 (872)
Q Consensus 169 ~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~ 248 (872)
+.+++.|+.... +++..+|..|++.+..++. .++.+. ..-++.+..+..|+++.+|..|...+..+.+
T Consensus 7 Qryl~~Il~~~~------~~~~~vr~~Al~~l~~il~---qGLvnP---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 7 QRYLKNILELCL------SSDDSVRLAALQVLELILR---QGLVNP---KQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHh---cCCCCh---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 455666666443 6789999999999998764 233322 3567888888899999999999999999999
Q ss_pred HhHHhhHhhHH
Q 002876 249 TYYEKLAPYIQ 259 (872)
Q Consensus 249 ~~~~~~~~~~~ 259 (872)
.++..+.....
T Consensus 75 K~~s~v~~~~~ 85 (187)
T PF12830_consen 75 KHESLVESRYS 85 (187)
T ss_pred HhHHHHHHHHH
Confidence 99887765443
No 262
>PF05536 Neurochondrin: Neurochondrin
Probab=88.11 E-value=48 Score=36.88 Aligned_cols=81 Identities=9% Similarity=-0.101 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC--ChhHHHHHHHHHHHH
Q 002876 407 VNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFL 484 (872)
Q Consensus 407 ~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l 484 (872)
+..+++.+...+ ...+...+...+..++.+....+.. .........+...+...+...+++ .+.-|..+......+
T Consensus 182 l~~il~~La~~f-s~~~~~~kfell~~L~~~L~~~~~~-~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~L 259 (543)
T PF05536_consen 182 LHSILPSLARDF-SSFHGEDKFELLEFLSAFLPRSPIL-PLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASL 259 (543)
T ss_pred HHHHHHHHHHHH-HhhccchHHHHHHHHHHhcCcCCcc-ccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 345555666666 6666677778888888888876310 000123456777888888887775 466777777777777
Q ss_pred HHhcc
Q 002876 485 AQGFE 489 (872)
Q Consensus 485 ~~~~~ 489 (872)
.+.++
T Consensus 260 l~~~G 264 (543)
T PF05536_consen 260 LDLLG 264 (543)
T ss_pred HHHhC
Confidence 77654
No 263
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=87.97 E-value=15 Score=31.70 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH--HHHHHHHhhhcCCChhh-HHHHHHHHHHHHHHHHhc
Q 002876 607 DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP--EFYKYVEMGLQNFEDYQ-VCAITVGVVGDLCRALED 683 (872)
Q Consensus 607 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~-v~~~a~~~l~~l~~~~~~ 683 (872)
...+..+.+-++++++.+.-.|+..+..+++.+|..|...+. .++..|.+.+....... |+..++.++......++.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 446667777788888889999999999999999998876553 47888888777655544 999999999999888853
No 264
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=87.94 E-value=11 Score=35.10 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhh
Q 002876 580 LLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQD 642 (872)
Q Consensus 580 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 642 (872)
.++.+++.+...++.. ..+++.+++..+.++-.+++...+.++=.++|..+.++|..
T Consensus 19 ~vl~v~s~lf~~lg~~------~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 19 EVLNVLSALFEKLGER------SSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred HHHHHHHHHHHHHhhh------ccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHH
Confidence 4677888888888876 56778888888888777777788999999999999999964
No 265
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=87.61 E-value=16 Score=41.73 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=77.0
Q ss_pred HhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH-HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHh
Q 002876 604 QYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP-EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALE 682 (872)
Q Consensus 604 ~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 682 (872)
|+-..++..+-.++.. ...|-.++..|+.++..-+........ .+++.|+++|.-+.+..+...|+.+|..+.-.++
T Consensus 66 P~~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred ccHHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 4455677777777774 457889999999999887766665555 4888888888877777788899999999999999
Q ss_pred ccccccHHHHHHHHHHHc
Q 002876 683 DKILPYCDGIMTQLLKDL 700 (872)
Q Consensus 683 ~~~~~~~~~i~~~l~~~l 700 (872)
..+.+|+++++..+..++
T Consensus 144 ~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 144 SSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 899999999999998887
No 266
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.58 E-value=1.2e+02 Score=40.93 Aligned_cols=361 Identities=9% Similarity=0.058 Sum_probs=169.2
Q ss_pred HHHHHHHHhcc-CChhHHHHHHHHHHHHHHhcccC-C-CCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHH
Q 002876 458 QIISVLLQSMK-DVPNVAEKACGALYFLAQGFEDA-I-SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534 (872)
Q Consensus 458 ~il~~l~~~l~-d~~~v~~~a~~al~~l~~~~~~~-~-~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l 534 (872)
-+++++..++. +++.++.....++..+....... + -......|.+..+++.+....-++ ...-+...+-.|+.+
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~---~wy~k~gG~~gI~~l 1060 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDS---TWYAKDGGVNGIKCL 1060 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccH---hHHHHcCCCceeeee
Confidence 45677777777 36677776666666665432100 0 013455677888888888776543 233344444555556
Q ss_pred HHccccC-cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHH
Q 002876 535 VRCSTDE-TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLF 613 (872)
Q Consensus 535 ~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l 613 (872)
+...+.. ...+...++..++..+..... ...+.+.. .........+..+.......+ .=...+..++..+
T Consensus 1061 ~~~~~~~~l~d~~~d~~~~l~fvl~d~~~---e~~~~~~~--~~~~~l~~ll~~~~~~~~~~~----~~~~~~~~~~~~l 1131 (3550)
T KOG0889|consen 1061 IESMPSLWLLDFQVDILKALFFVLKDTES---EVSSLPLD--EAKDILMDILRVIFIDELAEE----ERAKSAMNVFSPL 1131 (3550)
T ss_pred hhhchHHHHHHHHHHHhhhHHHhhcCCcc---ccccchHH--HHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHH
Confidence 6555521 122223334444433332211 11111110 111222223333322222111 0113345666667
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHH-----HhhhcCCChhhHHHHHHHHHHHHHHHHhcccccc
Q 002876 614 LRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYV-----EMGLQNFEDYQVCAITVGVVGDLCRALEDKILPY 688 (872)
Q Consensus 614 ~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l-----~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 688 (872)
..-+-+++..+|+.+..+|..+....|......+..+-..+ .+-+... ...+...-+..+.... ..++.+..+
T Consensus 1132 v~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~-p~~~qig~vd~~~fC~-~l~p~~f~~ 1209 (3550)
T KOG0889|consen 1132 VLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRAL-PFTIQIGHLDAITFCL-SLGPCLFDF 1209 (3550)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccC-CHHHHhhhHHHHHHHH-HcCCcccCc
Confidence 77777888899999999999999988766655555444333 2222211 1111111222222221 122233322
Q ss_pred HHHHHH------HHHHHcc--------C---C--CCCCCCchhHHHHHHHHHHHhcc---chHHhHHHHHHHHHHHHhhc
Q 002876 689 CDGIMT------QLLKDLS--------S---N--QLHRSVKPPIFSCFGDIALAIGE---NFEKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 689 ~~~i~~------~l~~~l~--------~---~--~~~~~v~~~~~~~l~~i~~~~~~---~~~~~l~~il~~l~~~l~~~ 746 (872)
-..+.. .+..... . . +.....|..+...++.......- ...+|.+.++-.+.+.+...
T Consensus 1210 ~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~ 1289 (3550)
T KOG0889|consen 1210 TEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR 1289 (3550)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC
Confidence 222211 1111110 0 0 00123466677777766655432 34578888888888888665
Q ss_pred cCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 002876 747 VHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTL 826 (872)
Q Consensus 747 ~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~ 826 (872)
. ..+.+.+..++...... ++..-+..+...+..+...+.| .++.+...+-.+...
T Consensus 1290 ~-------------~Ei~~~~~~~l~~v~~~-----~~~~~ke~lq~~lrplL~~l~d------~~~lsv~~l~~ls~l- 1344 (3550)
T KOG0889|consen 1290 S-------------SELIEVALEGLRKVLAQ-----DVKLPKELLQSHLRPLLMNLSD------HNNLSVPGLEGLSRL- 1344 (3550)
T ss_pred h-------------HHHHHHHHHHHHhhhhc-----cccccHHHHHhhHHHHHHhhhH------hhhhhHHHHHHHHHH-
Confidence 1 34445555555555543 2222233445555444444443 111222222222221
Q ss_pred cCCccccccCchHHHHHHHHHhcCCChhHHHH
Q 002876 827 GSNAGPLIQQSVSSKDFLNECLSSDDHMIKES 858 (872)
Q Consensus 827 g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ 858 (872)
+.-+..|+... +...++..+.......+.+.
T Consensus 1345 ~~ll~~~f~~e-~~rkll~hl~~~~~~~~~~y 1375 (3550)
T KOG0889|consen 1345 LRLLINYFKVE-IGRKLLQHLKKWLEDEVLDY 1375 (3550)
T ss_pred HHHHHHHHHHH-HHHHHHHhhHHhhhHHHHHH
Confidence 12233344432 56667766665544444433
No 267
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.53 E-value=45 Score=35.92 Aligned_cols=249 Identities=18% Similarity=0.153 Sum_probs=138.4
Q ss_pred ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHcccc--------C
Q 002876 470 VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD--------E 541 (872)
Q Consensus 470 ~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~--------~ 541 (872)
+..-..+.+..+..+++.+... ...-..+.-.++..++-..... +.++-+..+..+-.+-+..-. .
T Consensus 260 d~d~~~a~~RIFtel~eaf~~~---i~~np~~~l~~vellLl~~~h~---~~evie~SF~fW~~lse~l~~~~~~~~~~~ 333 (559)
T KOG2081|consen 260 DLDKNEAICRIFTELGEAFVVL---ISTNPEEFLRIVELLLLVAGHN---DTEVIEASFNFWYSLSEELTLTDDDEALGI 333 (559)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH---HhhCCCcchhHHHHHHHhccCC---chhhhhhhHHhhhhhHHHHhccccHHHHHH
Confidence 3444556677777777764322 1111114445555555554443 345555556555554443322 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccc
Q 002876 542 TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRS 621 (872)
Q Consensus 542 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~ 621 (872)
+.||+.+++..+.....-.. ......++...+...|-...+.+..++.-+|..+ .+.++...+.+ +.++
T Consensus 334 frpy~~rLvs~l~~h~qlp~-~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e--------~lk~~~~~l~e--~~~~ 402 (559)
T KOG2081|consen 334 FRPYFLRLVSLLKRHVQLPP-DQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDE--------CLKQMYIRLKE--NNAS 402 (559)
T ss_pred hHHHHHHHHHHHHHHccCCC-ccccCccchhHHHHHHHHHHHHHHHHHHHhCcHH--------HHHHHHHHHcc--CCCc
Confidence 34455444444444332111 1122233444455666667777877777777552 22233332322 3346
Q ss_pred cchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccc-cHHHHHHHHHHHc
Q 002876 622 ATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILP-YCDGIMTQLLKDL 700 (872)
Q Consensus 622 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~-~~~~i~~~l~~~l 700 (872)
+..-++++-.+..+++.....-.+-++.++..+.+. +....+|..++.++|.+...... .| .+.-++..+...+
T Consensus 403 We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl---p~Q~~~~~ts~ll~g~~~ew~~~--~p~~le~v~~~~~~~~ 477 (559)
T KOG2081|consen 403 WEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL---PEQAPLRYTSILLLGEYSEWVEQ--HPELLEPVLRYIRQGL 477 (559)
T ss_pred hHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC---ccchhHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHh
Confidence 678889999999998876655444444444444432 22235899999999999888752 22 2233444444444
Q ss_pred cCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHh
Q 002876 701 SSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAE 744 (872)
Q Consensus 701 ~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~ 744 (872)
+.. .....+..++.+++..+...+...++.+...+....+
T Consensus 478 ~~~----~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~ 517 (559)
T KOG2081|consen 478 QLK----RLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDS 517 (559)
T ss_pred hhc----chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 443 2556778888899888887777777776666655443
No 268
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.42 E-value=2 Score=35.66 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=41.6
Q ss_pred hhHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhccccccchhhH--HHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHh
Q 002876 130 PELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHV--NKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (872)
Q Consensus 130 ~~l~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~l~~~~~--~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (872)
-+++..|.+.+..+ ++.....|+.=++.++... |.- ...+ -..-..+++.+. +++++||..|+.|+..++.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~g--r~ii~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-PNG--RNIIEKLGAKERVMELMN--HEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGG--HHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHC-hhH--HHHHHhcChHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 45666666666332 3444445566666666665 432 1111 122345667777 8999999999999998653
No 269
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.36 E-value=14 Score=31.98 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH--HHHHHHHhhhcC--CChhhHHHHHHHHHHHHHHHH
Q 002876 606 ADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP--EFYKYVEMGLQN--FEDYQVCAITVGVVGDLCRAL 681 (872)
Q Consensus 606 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~--~~~~~v~~~a~~~l~~l~~~~ 681 (872)
....+..+..-++++++.+.-.|+..+..++..+|..|...+. .++..+.+.+.+ ..+..|+..++.++......+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3456677777888889999999999999999999998865543 356567776654 346689999999999999888
Q ss_pred hc
Q 002876 682 ED 683 (872)
Q Consensus 682 ~~ 683 (872)
+.
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 74
No 270
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=87.35 E-value=2 Score=38.13 Aligned_cols=125 Identities=11% Similarity=0.067 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCC---------------CcchHHHHHH
Q 002876 346 AMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSP---------------EKLVPLVNIA 410 (872)
Q Consensus 346 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~---------------~~~~~~~~~i 410 (872)
+...+.++..++...-..-+|.+++.+.+...+ +....+..+..+..+.+.... ..+....+.+
T Consensus 5 ~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i 83 (148)
T PF08389_consen 5 RNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDI 83 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHH
Confidence 344455666666554334466666666665554 345555666666665543311 0123334566
Q ss_pred HHHHHHHhccCCc----HHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHH
Q 002876 411 LNFMLTALMQDPN----NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGAL 481 (872)
Q Consensus 411 ~~~l~~~l~~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al 481 (872)
++.+.+.+ +... ..+...++.+++.+..+.+.. .-.-..+++.+++.+. ++..+..|+.+|
T Consensus 84 ~~~l~~~l-~~~~~~~~~~~~~~~L~~l~s~i~~~~~~--------~i~~~~~l~~~~~~l~-~~~~~~~A~~cl 148 (148)
T PF08389_consen 84 LEILSQIL-SQSSSEANEELVKAALKCLKSWISWIPIE--------LIINSNLLNLIFQLLQ-SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHH-HHHCHCCHHHHHHHHHHHHHHHTTTS-HH--------HHHSSSHHHHHHHHTT-SCCCHHHHHHHH
T ss_pred HHHHHHHH-HhhccccHHHHHHHHHHHHHHHHHhCCHH--------HhccHHHHHHHHHHcC-CHHHHHHHHHhC
Confidence 66666666 3322 788999999999999987521 1111247777777774 445577777664
No 271
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=86.78 E-value=57 Score=36.32 Aligned_cols=203 Identities=10% Similarity=0.100 Sum_probs=105.0
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCh------------HHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCCh--hHH
Q 002876 83 LSLDSSVKAQIKSFILKTLSSPAH------------DARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPP--HTK 148 (872)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~------------~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~--~~r 148 (872)
..++++.-+.+.+..+..+...++ .+-...|+++|.+....+. ..-..++..|-+..++.++ ..-
T Consensus 26 ~~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~-sVsdRF~~eL~~~~~~~~~~~~~~ 104 (552)
T PF14222_consen 26 HSLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFV-SVSDRFIAELEKLRKDSNDAESKI 104 (552)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHhcccCCchHHHH
Confidence 456677777777777777664332 3345566666666665443 1223345555555432121 111
Q ss_pred HHHHHHHHHhhhhccc-cccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChh---hHHHHHHH-
Q 002876 149 QATLETLGYICEEVSS-DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDM---ERDYIMRV- 223 (872)
Q Consensus 149 ~~al~~l~~i~~~~~~-~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~---~~~~il~~- 223 (872)
...+..+.++--...| +.+ +..-.++..+.+.....+...+++.+-++.+..++.-+......+. .|...+..
T Consensus 105 ~~li~GMr~lrlk~~p~e~~--e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i 182 (552)
T PF14222_consen 105 ELLIMGMRYLRLKMYPEEAF--EESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETI 182 (552)
T ss_pred HHHHhhcceeeecCCCHHHH--HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHH
Confidence 2222222222111112 222 2334444444444443124667999999999998865443332221 23233333
Q ss_pred ---HHHhhcCCCHHHHHHHHHHHHHHHHH-hHHhhHhhHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Q 002876 224 ---VCEATLSPEVKIRQAAFECLVAISST-YYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEI 292 (872)
Q Consensus 224 ---l~~~~~~~~~~~r~~~~~~l~~l~~~-~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~ 292 (872)
+.+.... +.....++-....++-. -++.|..++. .+++.....+++. ..|..+++++..+.-.+.
T Consensus 183 ~~~~~~~~~K--~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL 252 (552)
T PF14222_consen 183 YPRAAKMMSK--PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYL 252 (552)
T ss_pred HHHHHHHHhC--cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHH
Confidence 3333322 33334455555554433 3455666666 5777777767665 677888888888776653
No 272
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=86.21 E-value=14 Score=35.21 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=49.0
Q ss_pred hchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 002876 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (872)
Q Consensus 366 ~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
+.+.+.+.+...|++...|.+++.++..... ....+.++..+...+ .|++..||.+..|+|..++...+
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~-------~~~~~~~l~~~~~~~-~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIR-------KEDFDELLEIIEALL-KDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGG-------GCHHHHHHHHHHHCT-TGS-HHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHhCH
Confidence 6778888899988884455555433322221 144577788888888 99999999999999999988654
No 273
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.98 E-value=39 Score=33.70 Aligned_cols=307 Identities=12% Similarity=0.106 Sum_probs=161.6
Q ss_pred CchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhc
Q 002876 128 QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (872)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 207 (872)
.++-++-.+. +-.+++..+-.-+|.++..+...- |+.++-.-...++..+... ..+.++-...+.++..-+-
T Consensus 105 a~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~q-pdl~da~g~~vvv~lL~~~----~~~~dlt~~~~~~v~~Ac~-- 176 (461)
T KOG4199|consen 105 AHDALITLLE-LAESPNESVLKKSLEAINSLTHKQ-PDLFDAEAMAVVLKLLALK----VESEEVTLLTLQWLQKACI-- 176 (461)
T ss_pred CcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCC-cchhccccHHHHHHHHhcc----cchHHHHHHHHHHHHHHHH--
Confidence 3444444333 455666677777888888777766 7777444455555554432 4567787788877766432
Q ss_pred hhhccChhhH-----HHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhH-----HhhHhhHH-----HHHHHHHHHHhc
Q 002876 208 QANFSNDMER-----DYIMRVVCEATL-SPEVKIRQAAFECLVAISSTYY-----EKLAPYIQ-----DIFNITAKAVRE 271 (872)
Q Consensus 208 ~~~~~~~~~~-----~~il~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~-----~~~~~~~~-----~l~~~~~~~~~~ 271 (872)
.++..+ -.+++.+.+.+. .....+.++++..+..+..-.. .....|-. .++..+...++.
T Consensus 177 ----~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A 252 (461)
T KOG4199|consen 177 ----MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQA 252 (461)
T ss_pred ----HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHc
Confidence 111112 235555554443 3333566677777776653211 00111111 233334444432
Q ss_pred -CChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhh-hHHHHHHHHHhcccCCcccCCccchHhHHH
Q 002876 272 -DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALP-VLVPLLLETLLKQEEDQDQDEGAWNIAMAG 349 (872)
Q Consensus 272 -~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a 349 (872)
.++++...+...+..++-.. ++.+...+ -=+..++..|...+++ ..|..+
T Consensus 253 ~~dp~~L~~l~~tl~~lAVr~--------------------E~C~~I~e~GGl~tl~~~i~d~n~~--------~~r~l~ 304 (461)
T KOG4199|consen 253 GIDPDSLVSLSTTLKALAVRD--------------------EICKSIAESGGLDTLLRCIDDSNEQ--------GNRTLA 304 (461)
T ss_pred cCCccHHHHHHHHHHHHHHHH--------------------HHHHHHHHccCHHHHHHHHhhhchh--------hHHHHH
Confidence 23445444444445444211 11111100 0024455555432222 446666
Q ss_pred HHHHHHHHHHcCCc----------chhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHh
Q 002876 350 GTCLGLVARTVGDD----------IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTAL 418 (872)
Q Consensus 350 ~~~l~~l~~~~~~~----------~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l 418 (872)
..|+..+....|.+ ..+.++..+.+.. +++.+-+.++.++..++--. ++.-...+ ...-...++.+
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~--~~p~Vi~~~~a~i~~l~LR~-pdhsa~~ie~G~a~~avqAm 381 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS--DDPLVIQEVMAIISILCLRS-PDHSAKAIEAGAADLAVQAM 381 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC--CChHHHHHHHHHHHHHHhcC-cchHHHHHhcchHHHHHHHH
Confidence 77777776665533 2344444454544 44677777777777776443 23333333 22223344444
Q ss_pred ccCC-cHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhcc-CChhHHHHHHHHHHHH
Q 002876 419 MQDP-NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-DVPNVAEKACGALYFL 484 (872)
Q Consensus 419 ~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~v~~~a~~al~~l 484 (872)
..+| ...|+..+|+.+.++..+... .....+..-++.|+..-. .++.++..+-.+|..+
T Consensus 382 kahP~~a~vQrnac~~IRNiv~rs~~-------~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 382 KAHPVAAQVQRNACNMIRNIVVRSAE-------NRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhhhh-------ccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 2333 567999999999999998642 345555555666665444 4677777777777766
No 274
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=85.43 E-value=40 Score=33.22 Aligned_cols=192 Identities=14% Similarity=0.139 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcc-cCccchHHHHHHHHHhccCCh-----hHHHHHHH
Q 002876 406 LVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPI-INQGNCQQIISVLLQSMKDVP-----NVAEKACG 479 (872)
Q Consensus 406 ~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~~~il~~l~~~l~d~~-----~v~~~a~~ 479 (872)
.++.+-+.+++++ ..+ ..-..+...+.++......+....+. ...-.+-..+|.++..+++.. .....++.
T Consensus 61 ~f~Glq~Ll~KGL-~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~ 137 (262)
T PF14225_consen 61 NFEGLQPLLLKGL-RSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAE 137 (262)
T ss_pred CchhHHHHHhCcc-CCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 3466778888888 443 45667788888888864333221110 111233455677777776532 33445567
Q ss_pred HHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCc-HHHHHHHHHHHHHHHH
Q 002876 480 ALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDET-APMVMQLVPLIMMELH 558 (872)
Q Consensus 480 al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~ 558 (872)
.|..+++.-+ .+.+..++..+.+.--+. .-+.+..+++...+.+ +.+-.+++..+++.+.
T Consensus 138 ~La~~a~~~~---------~~~La~il~~ya~~~fr~----------~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~ 198 (262)
T PF14225_consen 138 ALAQVAEAQG---------LPNLARILSSYAKGRFRD----------KDDFLSQVVSYLREAFFPDHEFQILTFLLGLLE 198 (262)
T ss_pred HHHHHHHhCC---------CccHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 8888876421 235555555554432211 1122222333332222 3344555666666664
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 002876 559 QTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (872)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 638 (872)
+... .++..++.+|..+....... .+...+++.-+.++++.+ .-.+|+..+..+...
T Consensus 199 n~~~-------------w~~~~~L~iL~~ll~~~d~~-------~~~~~dlispllrlL~t~---~~~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 199 NGPP-------------WLRRKTLQILKVLLPHVDMR-------SPHGADLISPLLRLLQTD---LWMEALEVLDEIVTR 255 (262)
T ss_pred CCcH-------------HHHHHHHHHHHHHhccccCC-------CCcchHHHHHHHHHhCCc---cHHHHHHHHHHHHhh
Confidence 4221 35566788888887766543 235666777788888755 446778888777776
Q ss_pred hhhh
Q 002876 639 TGQD 642 (872)
Q Consensus 639 ~~~~ 642 (872)
.|..
T Consensus 256 s~s~ 259 (262)
T PF14225_consen 256 SGSP 259 (262)
T ss_pred cccc
Confidence 6643
No 275
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=85.36 E-value=37 Score=32.89 Aligned_cols=177 Identities=12% Similarity=0.140 Sum_probs=100.1
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 002876 226 EATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGD 305 (872)
Q Consensus 226 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 305 (872)
.+.+..+++.....++.|..++.+.. ...+.+++.+.........+.+..++..+..+.....
T Consensus 8 ~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~------------- 70 (234)
T PF12530_consen 8 KLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND------------- 70 (234)
T ss_pred HhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-------------
Confidence 35566788888888899888887641 2334455555555555555554455555555554321
Q ss_pred CCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhh-cCcchhhh
Q 002876 306 SDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENI-TKQEWRQR 384 (872)
Q Consensus 306 ~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~-~~~~~~~r 384 (872)
..++.+-+.+.....+......+++..|....+.+.++..++...++ -.+.+++.+...+ .+.+...+
T Consensus 71 ----------r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~ 139 (234)
T PF12530_consen 71 ----------RHFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQ 139 (234)
T ss_pred ----------hHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHH
Confidence 11122333333321111111111234577766667788888888776 5566777777777 56666777
Q ss_pred HHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Q 002876 385 EAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLG 435 (872)
Q Consensus 385 ~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~ 435 (872)
-.++.++..+++... -. +...+..+.+.++.+..|.|-..-+..+.
T Consensus 140 alale~l~~Lc~~~v-vd----~~s~w~vl~~~l~~~~rp~v~~~l~~l~~ 185 (234)
T PF12530_consen 140 ALALEALAPLCEAEV-VD----FYSAWKVLQKKLSLDYRPLVLKSLCSLFA 185 (234)
T ss_pred HHHHHHHHHHHHHhh-cc----HHHHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 777888888875431 11 23334444454535667777766555544
No 276
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=85.34 E-value=2.5 Score=33.61 Aligned_cols=57 Identities=9% Similarity=0.195 Sum_probs=45.2
Q ss_pred CccchHhHHHHHHHHHHHHHcCC---cchhchHHHHHhhhcCc--chhhhHHHHHHHHHhhC
Q 002876 340 EGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQ--EWRQREAATYAFGSILE 396 (872)
Q Consensus 340 ~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~~~~~--~~~~r~aal~~l~~l~~ 396 (872)
++.|.+|..|+..+..++..++. .+.|.+...+.+.+.|+ .+..+++|+.++..+..
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 34599999999999999999874 35667777777777764 47889999999988743
No 277
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.75 E-value=98 Score=38.34 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=92.4
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccch--hhHHHHHHHHHhc
Q 002876 105 AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQ--DHVNKILTAVVQG 182 (872)
Q Consensus 105 ~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~--~~~~~i~~~l~~~ 182 (872)
+.+||....+|++ ... . ..|..++..+-....+.+..+...+...+..+........+++ ..+..-++.+...
T Consensus 1050 s~~Irelv~rC~~--~ni--k-SGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F 1124 (1514)
T KOG0929|consen 1050 SAEIRELVVRCIS--SNI--K-SGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEF 1124 (1514)
T ss_pred cchhHHHHHhhhh--hhh--h-hhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHH
Confidence 5678888888877 111 2 5899999988888888788888888887776655542333321 2233344444444
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhhchhh-----cc-----ChhhH-HHHHHHHH---HhhcCCCHHHHHHHHHHHHHHHH
Q 002876 183 MNASESNNDVRLAATRALYNALGFAQAN-----FS-----NDMER-DYIMRVVC---EATLSPEVKIRQAAFECLVAISS 248 (872)
Q Consensus 183 l~~~~~~~~vr~~al~~l~~~~~~~~~~-----~~-----~~~~~-~~il~~l~---~~~~~~~~~~r~~~~~~l~~l~~ 248 (872)
.++ -..+..-..+++.+..++....+. +. ....+ ...++.++ ..+.+...++|..+++.+..+..
T Consensus 1125 ~~~-~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~ 1203 (1514)
T KOG0929|consen 1125 TKN-LGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILK 1203 (1514)
T ss_pred HHh-cCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHH
Confidence 332 122233333443333333222211 11 00001 12333333 34456789999999999999999
Q ss_pred HhHHhhHh-hHHHHHHHHHHHHh
Q 002876 249 TYYEKLAP-YIQDIFNITAKAVR 270 (872)
Q Consensus 249 ~~~~~~~~-~~~~l~~~~~~~~~ 270 (872)
.+++.|.+ +++.++..++..+.
T Consensus 1204 ~~g~~F~~~~We~v~~~~fpIF~ 1226 (1514)
T KOG0929|consen 1204 EHGDDFSKEFWEDVFRILFPIFD 1226 (1514)
T ss_pred hhhhhccHHHHHHHHHheeeccc
Confidence 99877765 45677776555543
No 278
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.61 E-value=11 Score=33.13 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=60.3
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccH--HHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhc
Q 002876 648 PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYC--DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG 725 (872)
Q Consensus 648 ~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~ 725 (872)
...+..|.+.+.+ .++.+...|+.++..++.++|..|...+ ..+++.|.+++... .+..|+..++..+..-+..++
T Consensus 36 k~a~ral~KRl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~-~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 36 KDCLKAIMKRLNH-KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR-VHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHhC
Confidence 3456666677764 4568888999999999999998776544 36888898888875 478899999998888887776
Q ss_pred c
Q 002876 726 E 726 (872)
Q Consensus 726 ~ 726 (872)
.
T Consensus 114 ~ 114 (144)
T cd03568 114 N 114 (144)
T ss_pred C
Confidence 4
No 279
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.48 E-value=1.1e+02 Score=37.67 Aligned_cols=169 Identities=12% Similarity=0.104 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHc-CCcchhchHHHHHhhh-cCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcH
Q 002876 347 MAGGTCLGLVARTV-GDDIVPLVMPFVEENI-TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNN 424 (872)
Q Consensus 347 ~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~~-~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~ 424 (872)
.++..|.+.++..+ +....+.++..+.... .+..|++|.+.+..+..+.-....-........+...+...+ +|..-
T Consensus 1505 ~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l-~D~~i 1583 (1710)
T KOG1851|consen 1505 NSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLL-NDDQI 1583 (1710)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH-cchHH
Confidence 44555555565554 5667777777777433 446699999998877775533211223445678888899999 99988
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC--Ch-hHHHHHHHHHHHHHHhcccCCCCCCCCchh
Q 002876 425 HVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VP-NVAEKACGALYFLAQGFEDAISPSSPLTPF 501 (872)
Q Consensus 425 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~-~v~~~a~~al~~l~~~~~~~~~~~~~l~~~ 501 (872)
.||+.|+.++.-+....... ... ..-......... .. .....|.-.|+.++-.+ +..+..+
T Consensus 1584 ~vre~Aa~~Lsgl~~~s~~~------~~~----~k~d~~~~~~~s~s~~~i~~HgavlgLgA~Vlaf------Py~vP~w 1647 (1710)
T KOG1851|consen 1584 EVREEAAKCLSGLLQGSKFQ------FVS----DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAF------PYVVPLW 1647 (1710)
T ss_pred HHHHHHHHHHHHHHhccccc------cch----HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhc------cccchhh
Confidence 89999999999887754311 111 111222222221 12 23445667788887766 3444446
Q ss_pred HHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHH
Q 002876 502 FQEIVQALLTVTHREDAGESRLRTAAYETLNEVVR 536 (872)
Q Consensus 502 l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~ 536 (872)
++..+..+.....++ ..++.++-+++..+-+
T Consensus 1648 ip~~L~~Ls~fa~e~----~~i~~tvkktvseFrr 1678 (1710)
T KOG1851|consen 1648 IPKPLMNLSSFARES----AAIKQTVKKTVSEFRR 1678 (1710)
T ss_pred hHHHHHHHHhhcCCc----hHHHHHHHHHHHHHHH
Confidence 666666655554433 2244444444444433
No 280
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=84.18 E-value=2.2 Score=27.68 Aligned_cols=28 Identities=43% Similarity=0.337 Sum_probs=24.4
Q ss_pred HHHHHHHHhccC-ChhHHHHHHHHHHHHH
Q 002876 458 QIISVLLQSMKD-VPNVAEKACGALYFLA 485 (872)
Q Consensus 458 ~il~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
..+|.|++.+.+ ++.++..|+|+|.+++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 467888888886 7899999999999986
No 281
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.71 E-value=3.8 Score=34.04 Aligned_cols=78 Identities=9% Similarity=0.059 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 002876 170 DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (872)
Q Consensus 170 ~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 249 (872)
..--.++..|.+.+.. ..++.+..-|+.-++.++.+.|..-.. ......-..+.+++.++++++|..|+.|+..++..
T Consensus 39 ~~~~~llk~L~~lL~~-s~d~~~laVac~Dig~~vr~~p~gr~i-i~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 39 ENNFELLKKLIKLLDK-SDDPTTLAVACHDIGEFVRHYPNGRNI-IEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp SGGGHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH-GGGHHH-HHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHcc-CCCcceeehhhcchHHHHHHChhHHHH-HHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3445566667777743 347777788888899988876643211 01122445667788899999999999999987754
No 282
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=83.65 E-value=25 Score=40.09 Aligned_cols=153 Identities=15% Similarity=0.202 Sum_probs=97.6
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHH
Q 002876 96 FILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKI 175 (872)
Q Consensus 96 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i 175 (872)
.|+..|.+.+..+...+-..+......+ .-+-++..|++..-+... ..++.+|..+ ..++-..+
T Consensus 8 ~l~~~l~s~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~y~~~t~s---~~~~~il~~~---------~~P~~K~~ 71 (668)
T PF04388_consen 8 ELLSLLESNDLSVLEEIKALLQELLNSD----REPWLVNGLVDYYLSTNS---QRALEILVGV---------QEPHDKHL 71 (668)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHhhcc----chHHHHHHHHHHHhhcCc---HHHHHHHHhc---------CCccHHHH
Confidence 4677777777666666666666666543 223456666665432221 1234444322 13555666
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHhHHhh
Q 002876 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT-LSPEVKIRQAAFECLVAISSTYYEKL 254 (872)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~ 254 (872)
+..+-..+. .+.-|..++..|+.++..-+.-.-. .....++..|+.++ .|.+.-+...|+.+|..++-..|..+
T Consensus 72 ~~~l~~~~~----~~~~Rl~~L~Ll~~~v~~qp~~l~~-i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l 146 (668)
T PF04388_consen 72 FDKLNDYFV----KPSYRLQALTLLGHFVRSQPPWLYK-ILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSL 146 (668)
T ss_pred HHHHHHHHc----CchhHHHHHHHHHHHHhcCCchHHH-HhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchh
Confidence 677777666 4578899999999887633221110 11123455555544 57788888999999999999999999
Q ss_pred HhhHHHHHHHHHHHH
Q 002876 255 APYIQDIFNITAKAV 269 (872)
Q Consensus 255 ~~~~~~l~~~~~~~~ 269 (872)
.+|++.++.++...+
T Consensus 147 ~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 147 GPHLPDLFNIFGRLL 161 (668)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999887776
No 283
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=83.33 E-value=19 Score=31.44 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhh--HHHHHHHHhhhcCCChhh---HHHHHHHHHHHHHHH
Q 002876 606 ADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYM--PEFYKYVEMGLQNFEDYQ---VCAITVGVVGDLCRA 680 (872)
Q Consensus 606 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~---v~~~a~~~l~~l~~~ 680 (872)
....+..+.+-|.+.++.+.-.|+..+..+++.+|..|...+ ..++..+.+.+.+..... |+..++.++......
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 456777788888888999999999999999999999888765 347777777665444333 899999999998888
Q ss_pred Hh
Q 002876 681 LE 682 (872)
Q Consensus 681 ~~ 682 (872)
++
T Consensus 120 f~ 121 (140)
T PF00790_consen 120 FK 121 (140)
T ss_dssp TT
T ss_pred HC
Confidence 84
No 284
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=82.18 E-value=1.5e+02 Score=37.43 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=77.0
Q ss_pred cchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHH
Q 002876 402 KLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGA 480 (872)
Q Consensus 402 ~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~a 480 (872)
.+..|++.++...-..+ ..+++.|+.-+......+...+. .-+-+.++..|+..+.+ +..-...|...
T Consensus 428 vL~~~f~siL~la~~Ll-~S~e~~v~~FG~~~Y~~lF~~fd----------s~~qqeVv~~Lvthi~sg~~~ev~~aL~v 496 (1426)
T PF14631_consen 428 VLKDYFPSILSLAQSLL-RSKEPSVREFGSHLYKYLFKEFD----------SYCQQEVVGALVTHIGSGNSQEVDAALDV 496 (1426)
T ss_dssp HHTTSHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHHSS-----------HHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhhcc----------chhHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 34566788888888888 89999999999988888888652 12345677777777653 43333577788
Q ss_pred HHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHcc
Q 002876 481 LYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCS 538 (872)
Q Consensus 481 l~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~ 538 (872)
|..++... +..+.+| ..++..++..+.+-. .+++| .++..+..++-..
T Consensus 497 L~~L~~~~------~~~l~~f-a~~l~giLD~l~~Ls--~~qiR-~lf~il~~La~~~ 544 (1426)
T PF14631_consen 497 LCELAEKN------PSELQPF-ATFLKGILDYLDNLS--LQQIR-KLFDILCTLAFSD 544 (1426)
T ss_dssp HHHHHHH-------HHHHHHT-HHHHHGGGGGGGG----HHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHhcc------HHHHHHH-HHHHHHHHHHHhcCC--HHHHH-HHHHHHHHHhcCC
Confidence 88887753 3445555 455666667776654 56676 6788887776544
No 285
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=82.07 E-value=15 Score=32.71 Aligned_cols=80 Identities=13% Similarity=0.174 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHHHhh-hhhHhhhHHHHHHHHhhhcCC--ChhhHHH-HHHHHHHHHHHHHhccccccHHHHHHHHHHH
Q 002876 624 AHEEAMLAIGALAYATG-QDFLKYMPEFYKYVEMGLQNF--EDYQVCA-ITVGVVGDLCRALEDKILPYCDGIMTQLLKD 699 (872)
Q Consensus 624 ~~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~--~~~~v~~-~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 699 (872)
+...+..++-.++..+. ..|.|.+-.++..-...+... .....|. .-+.++..+...++.-+.||..-+++.....
T Consensus 37 vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~ 116 (153)
T PF08146_consen 37 VESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDL 116 (153)
T ss_pred HHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666665 578898888888776655432 2223444 4455888899999999999999999998888
Q ss_pred ccCC
Q 002876 700 LSSN 703 (872)
Q Consensus 700 l~~~ 703 (872)
|+..
T Consensus 117 L~~~ 120 (153)
T PF08146_consen 117 LKQF 120 (153)
T ss_pred HHHh
Confidence 8654
No 286
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.06 E-value=25 Score=29.59 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHH
Q 002876 689 CDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGIL 768 (872)
Q Consensus 689 ~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~ 768 (872)
...++..|.+.|++. ++.||.-++.+|-.++...++.|..++..=...+..+.+-...++.- ...+....||..+-
T Consensus 36 ~~ei~d~L~kRL~~~--~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~--~Gd~~~~~VR~~A~ 111 (122)
T cd03572 36 CQELLEYLLKRLKRS--SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPL--KGDSLNEKVREEAQ 111 (122)
T ss_pred HHHHHHHHHHHhcCC--CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcc--cCcchhHHHHHHHH
Confidence 458899999999987 68899999999999999888889888887777666654444323220 11235568899888
Q ss_pred HHHHHHhh
Q 002876 769 EAFSGIFQ 776 (872)
Q Consensus 769 ~~~~~l~~ 776 (872)
+++..+.+
T Consensus 112 El~~~if~ 119 (122)
T cd03572 112 ELIKAIFS 119 (122)
T ss_pred HHHHHHhc
Confidence 88777654
No 287
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=81.59 E-value=4.1 Score=33.16 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=50.3
Q ss_pred CCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccC-cHHHHHHHHHHHHHHHHH
Q 002876 495 SSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQLVPLIMMELHQ 559 (872)
Q Consensus 495 ~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~ 559 (872)
++.+.||++.++..+...+..- .+.+|..++..+..+++.+|.. +..+...+++..+..+..
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi---~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHI---SPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhC---CHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 4567889999999998888876 5789999999999999999987 566666777777666543
No 288
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=80.93 E-value=20 Score=31.00 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=65.1
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHH-HHHHHHHh
Q 002876 103 SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVN-KILTAVVQ 181 (872)
Q Consensus 103 ~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~-~i~~~l~~ 181 (872)
++|...-..++..+..- + ..=.+.+..|...++++++.+...|+.++..+++.+ +..|...... ..+..+..
T Consensus 15 ~~D~~~il~icd~I~~~-----~-~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNc-g~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 15 EPDWALNLELCDLINLK-----P-NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNC-GKPFHLQVADKEFLLELVK 87 (133)
T ss_pred CccHHHHHHHHHHHhCC-----C-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC-ChHHHHHHhhHHHHHHHHH
Confidence 34544444444444221 2 344678888889999999999999999999999998 4434222222 33333444
Q ss_pred cccCC-CCCHHHHHHHHHHHHHhHhhchh
Q 002876 182 GMNAS-ESNNDVRLAATRALYNALGFAQA 209 (872)
Q Consensus 182 ~l~~~-~~~~~vr~~al~~l~~~~~~~~~ 209 (872)
.+... ..+..||..+++.+..+...++.
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44321 46889999999999998765543
No 289
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=80.90 E-value=1.5e+02 Score=36.52 Aligned_cols=130 Identities=11% Similarity=0.116 Sum_probs=73.3
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHhhhhhHh--hhHHHHHHHHhhhcCC---ChhhHHHHHHHHHHHHHHHHhcccccc
Q 002876 614 LRVFAIRSATAHEEAMLAIGALAYATGQDFLK--YMPEFYKYVEMGLQNF---EDYQVCAITVGVVGDLCRALEDKILPY 688 (872)
Q Consensus 614 ~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~i~~~l~~~l~~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~ 688 (872)
.-.+..........++.+|-++..++.++-.. -++..+-+|+..|.-. ....+...+-..|..+...+- .-.+|
T Consensus 444 ~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IA-t~E~y 522 (2195)
T KOG2122|consen 444 ACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIA-TCEDY 522 (2195)
T ss_pred HHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhh-ccchH
Confidence 33455555556678888899988888654333 3466788888777521 111222222222222222111 01122
Q ss_pred ---H--HHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHH-HHHHHHHHHHhhc
Q 002876 689 ---C--DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLM-YAMPMLQSAAELS 746 (872)
Q Consensus 689 ---~--~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~-~il~~l~~~l~~~ 746 (872)
+ .+.+..|++.|++. +..+..+++.+|-++.....++-.-.++ .-++.+.+.+..+
T Consensus 523 RQILR~~NCLq~LLQ~LKS~--SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK 584 (2195)
T KOG2122|consen 523 RQILRRHNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK 584 (2195)
T ss_pred HHHHHHhhHHHHHHHHhhhc--ceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh
Confidence 1 25678888888887 4567777888887777666554332233 3467777777655
No 290
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=80.90 E-value=20 Score=31.23 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=56.1
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccH--HHHHHHHHHHccC----CCCCCCCchhHHHHHHHHHH
Q 002876 649 EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYC--DGIMTQLLKDLSS----NQLHRSVKPPIFSCFGDIAL 722 (872)
Q Consensus 649 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~----~~~~~~v~~~~~~~l~~i~~ 722 (872)
..+..+.+.+++. ++.+...|+.++..++.++|..|...+ ..+++.+++++.. +..+..|+..++..+..-+.
T Consensus 38 ~a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3455566667644 568888999999999999998776644 3588888888853 22356788888888877777
Q ss_pred Hhcc
Q 002876 723 AIGE 726 (872)
Q Consensus 723 ~~~~ 726 (872)
.++.
T Consensus 117 ~f~~ 120 (139)
T cd03567 117 ELPH 120 (139)
T ss_pred Hhcc
Confidence 6653
No 291
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=80.81 E-value=18 Score=29.51 Aligned_cols=61 Identities=8% Similarity=-0.055 Sum_probs=53.0
Q ss_pred HhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhh-hHhhhHHHHHHHHhhhcCC
Q 002876 601 VFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQD-FLKYMPEFYKYVEMGLQNF 661 (872)
Q Consensus 601 ~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~ 661 (872)
.+.|+++.++..+...+.+-.+++|..++..|.-+...++.. +..+..++++.+...+...
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 478899999999999999989999999999999999999988 6778888888888777643
No 292
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=79.85 E-value=4.2 Score=26.57 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHH
Q 002876 408 NIALNFMLTALMQDPNNHVKDTTAWT 433 (872)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~ 433 (872)
+.+...+...+ .|+++.||++|..+
T Consensus 17 ~~v~~~i~~rl-~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRL-SDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 57788889999 99999999999765
No 293
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=78.89 E-value=4.1 Score=32.02 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 002876 382 RQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (872)
Q Consensus 382 ~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (872)
..|++++++|++++... +..+.++++.++..+.... +| ...++.++-.+++.+-+.
T Consensus 4 ~~rH~~VLGL~Alv~a~-Py~vP~w~P~~l~~La~~~-~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAF-PYDVPPWMPEVLEELARHA-ND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp HHHHHHHHHHHHHHTT--S--SS-HHHHHHHHHHTTS-SS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHh-CC-CchHHHHHHHHHHHHHHh
Confidence 56899999999999988 5778889999998887777 65 667888888898887774
No 294
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.80 E-value=92 Score=32.85 Aligned_cols=53 Identities=13% Similarity=0.267 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhh--HHHHHHHHhhhcCC
Q 002876 607 DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYM--PEFYKYVEMGLQNF 661 (872)
Q Consensus 607 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~ 661 (872)
..++..+.+++..++++++...+..+-.+....| ..|-+ ..++|.+...+.+.
T Consensus 344 ~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~g--lr~KMv~~GllP~l~~ll~~d 398 (791)
T KOG1222|consen 344 NGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSG--LRPKMVNGGLLPHLASLLDSD 398 (791)
T ss_pred ccHHHHHHHhcCCCCHHHHHHHHHHhhhcccccc--ccHHHhhccchHHHHHHhCCc
Confidence 3578888888888888888888877776654333 22222 34777777777653
No 295
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=78.62 E-value=7.2 Score=34.93 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=79.9
Q ss_pred hHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH--HHHHHHHHHHhcc-
Q 002876 344 NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQ- 420 (872)
Q Consensus 344 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~--~~i~~~l~~~l~~- 420 (872)
++|..+.-++.++-+..++.....+..++...+...+......++.++..+..+. ++.....+ +.+++.+.... .
T Consensus 20 ~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~-~dv~~~l~~~eg~~~~l~~~~-~~ 97 (157)
T PF11701_consen 20 EVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGP-PDVGSELFLSEGFLESLLPLA-SR 97 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT-HHHHHHHCCTTTHHHHHHHHH-H-
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC-HHHHHHHHhhhhHHHHHHHHH-hc
Confidence 5677777777766555555666666777777776655555666677777776654 22222221 34556666666 5
Q ss_pred -CCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC--Chh-HHHHHHHHHHH
Q 002876 421 -DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPN-VAEKACGALYF 483 (872)
Q Consensus 421 -d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~-v~~~a~~al~~ 483 (872)
.++..+..+++.+++.-+..-. .........++.|-+..+. +.. +|..|+-.|..
T Consensus 98 ~~~~~~~~~~~lell~aAc~d~~--------~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAACIDKS--------CRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHTTSHH--------HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccHH--------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 6788899999999987776432 2334445666666666643 344 77777666653
No 296
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=78.45 E-value=71 Score=31.50 Aligned_cols=189 Identities=12% Similarity=0.123 Sum_probs=95.1
Q ss_pred cHHHHHHHHHHHHHhhhhccCC-CCCCcccCccchHHHHHHHHHhccC--ChhHHHHHHHHHHHHHHhcccCCCCCCCCc
Q 002876 423 NNHVKDTTAWTLGRMFEFLHGS-TLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLT 499 (872)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~ 499 (872)
.|+.-+.+..+++.+....+.+ .........+.+..+-..++..|.. +.-.-+.+..++..+|+.+-.. ....+.
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~--~~~~l~ 137 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSS--NNPELS 137 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcC--CCchHH
Confidence 3555566666777777554311 0001223445566666666666653 4455566667788887765321 123333
Q ss_pred hhHHHHHHHHHHhhccC-CchhhhhHHHH--HHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHH
Q 002876 500 PFFQEIVQALLTVTHRE-DAGESRLRTAA--YETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNE 576 (872)
Q Consensus 500 ~~l~~i~~~l~~~l~~~-~~~~~~v~~~~--~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~ 576 (872)
.....-+..++..+... .......|..+ =.++..+....+....+.+...+..+++...... ...++.. ...
T Consensus 138 ~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~----~~~~~~~-~d~ 212 (255)
T PF10350_consen 138 ELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPS----TQHEDEK-SDL 212 (255)
T ss_pred HhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc----ccccccc-cch
Confidence 33344555555555544 11001233321 2233445555544333555555555555543321 1111110 012
Q ss_pred HHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcccc
Q 002876 577 IQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSA 622 (872)
Q Consensus 577 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 622 (872)
-+-+++++|..++..-.-. +.+.+|+.+.+...++.+.++++
T Consensus 213 ~qVHAlNiLr~if~ds~L~----~~~~~yi~~~l~lai~~f~s~~W 254 (255)
T PF10350_consen 213 PQVHALNILRAIFRDSKLS----EDVSPYIEDALILAIKGFSSPDW 254 (255)
T ss_pred HHHHHHHHHHHHHhcchhH----HHHHHHHHHHHHHHHHhCCCccC
Confidence 4557899998887632211 22677888887777777766544
No 297
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=78.07 E-value=24 Score=30.81 Aligned_cols=79 Identities=10% Similarity=0.123 Sum_probs=55.8
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHH--HHHHH-HHHHccCCC-CCCCCchhHHHHHHHHHHHh
Q 002876 649 EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCD--GIMTQ-LLKDLSSNQ-LHRSVKPPIFSCFGDIALAI 724 (872)
Q Consensus 649 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~-l~~~l~~~~-~~~~v~~~~~~~l~~i~~~~ 724 (872)
..+..|.+.++...++.+...|+.++..++.++|..|...+. .+++. |.+++.... .+..|+..++..+..-+..+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 455666666764446678888999999999999987775443 57776 777776432 23467888888888877776
Q ss_pred ccc
Q 002876 725 GEN 727 (872)
Q Consensus 725 ~~~ 727 (872)
+.+
T Consensus 118 ~~~ 120 (141)
T cd03565 118 RGS 120 (141)
T ss_pred CCC
Confidence 543
No 298
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=77.94 E-value=1.1e+02 Score=33.14 Aligned_cols=95 Identities=17% Similarity=0.143 Sum_probs=61.6
Q ss_pred hhhhHHHHHHHHHhhCCCCCCcchHHHHHHHH-HHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHH
Q 002876 381 WRQREAATYAFGSILEGPSPEKLVPLVNIALN-FMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQI 459 (872)
Q Consensus 381 ~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~-~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~i 459 (872)
++.|.++..+||.++....... +..++. .+..+| ++++..-|..++.++..++....... .....+.+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~----~~~~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~------~~~~~~~l 169 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESS----LQEIFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERN------PSPPPQAL 169 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCcccc------CCccHHHH
Confidence 7889999999999998764222 333443 578888 99999999999999999988765321 11113455
Q ss_pred HHHHHHhccC--C----------hhHHHHHHHHHHHHHH
Q 002876 460 ISVLLQSMKD--V----------PNVAEKACGALYFLAQ 486 (872)
Q Consensus 460 l~~l~~~l~d--~----------~~v~~~a~~al~~l~~ 486 (872)
.+.|...|.+ . .++|..+-..+..|..
T Consensus 170 ~~~L~~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~ 208 (441)
T PF12054_consen 170 SPRLLEILENPEPPYYDELVPSLKRLRTECQQLLATFRD 208 (441)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555552 1 2455555555555544
No 299
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=77.78 E-value=27 Score=31.81 Aligned_cols=97 Identities=7% Similarity=0.101 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHhhhhhH------hhh----HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHH
Q 002876 625 HEEAMLAIGALAYATGQDFL------KYM----PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMT 694 (872)
Q Consensus 625 ~~~a~~~l~~l~~~~~~~~~------~~~----~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~ 694 (872)
+.-++..+..+....|..+. .+. +.+.|.+.+.+.+.+ +.+-..++.++..+...++..++.-++-+++
T Consensus 39 k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~~~~~Lk~ele~~l~ 117 (168)
T PF12783_consen 39 KLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSRFRSHLKLELEVFLS 117 (168)
T ss_pred HHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655554 122 346777777776544 7888889999999999888888877888888
Q ss_pred HHHH-HccCCCCCCCCchhHHHHHHHHHH
Q 002876 695 QLLK-DLSSNQLHRSVKPPIFSCFGDIAL 722 (872)
Q Consensus 695 ~l~~-~l~~~~~~~~v~~~~~~~l~~i~~ 722 (872)
.++. .+..+......|..++.++..++.
T Consensus 118 ~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 118 HIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 8777 555543223466777888877775
No 300
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=77.78 E-value=93 Score=32.34 Aligned_cols=69 Identities=14% Similarity=0.072 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHH
Q 002876 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (872)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~ 486 (872)
..++..+...+.++.|.....+.+.+++.-..... ...-+.++..+.++++| .+.+|..-+.+++..+.
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~----------~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLS----------SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC----------cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 45555555666466788888888888887776652 22335888999999998 45688877777777765
No 301
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=77.59 E-value=22 Score=30.72 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=56.2
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccH--HHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhc
Q 002876 650 FYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYC--DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG 725 (872)
Q Consensus 650 i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~ 725 (872)
.+..|.+.+.+ .++.+...|+.++..++.++|..|...+ ..+++.|..++......+.|+..++..+..-+..++
T Consensus 38 a~r~l~krl~~-~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 38 AVRLLKKRLNN-KNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 55556667764 4568888999999999999998776554 358888888888775333378888888887777764
No 302
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=77.35 E-value=3.9 Score=26.72 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=28.0
Q ss_pred HHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHH
Q 002876 154 TLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRAL 200 (872)
Q Consensus 154 ~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l 200 (872)
+++.+.+.- |..+. .+.+...+...+. |+++.||.+|++.+
T Consensus 2 ~l~~iv~~d-p~ll~---~~~v~~~i~~rl~--D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKD-PTLLD---SSDVQSAIIRRLS--DSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcC-ccccc---hHHHHHHHHHHhc--CCChHHHHHHHHHC
Confidence 344444443 55542 3467777888888 89999999998753
No 303
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=76.72 E-value=21 Score=31.24 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccH--HHHHHHHHHHccCCCCCCC--CchhHHHHHHHHHHH
Q 002876 648 PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYC--DGIMTQLLKDLSSNQLHRS--VKPPIFSCFGDIALA 723 (872)
Q Consensus 648 ~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~--v~~~~~~~l~~i~~~ 723 (872)
...+..|.+.+.. .++.+...|+.++..++.++|..|...+ ..+++.+..++.+...... ||..++..+..-+..
T Consensus 41 kea~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 41 KEAARALRKRLKH-GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 4466667777775 5678999999999999999997776544 3588888887776643322 788888888777777
Q ss_pred hc
Q 002876 724 IG 725 (872)
Q Consensus 724 ~~ 725 (872)
++
T Consensus 120 f~ 121 (140)
T PF00790_consen 120 FK 121 (140)
T ss_dssp TT
T ss_pred HC
Confidence 64
No 304
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=76.67 E-value=1.6e+02 Score=34.38 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHh
Q 002876 170 DHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (872)
Q Consensus 170 ~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (872)
.....++..+...+.. +...+.|..++..+..++.
T Consensus 63 ~aI~~lw~~~~DlI~p-N~~Ae~R~~vl~l~kR~v~ 97 (1697)
T KOG3687|consen 63 HAIEALWKAVADLIQP-NRTAEARHAVLALLKRIVQ 97 (1697)
T ss_pred HHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHh
Confidence 3445555555555543 5678899999998888775
No 305
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=76.08 E-value=53 Score=28.63 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH--HHHHHHHhhhcC-----CChhhHHHHHHHHHHHHHHH
Q 002876 608 QMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP--EFYKYVEMGLQN-----FEDYQVCAITVGVVGDLCRA 680 (872)
Q Consensus 608 ~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~-----~~~~~v~~~a~~~l~~l~~~ 680 (872)
..+..+..-++++++.+.-.|+..|..+++.+|..|...+. .++..+.+.+.. ..+..|+...+.++......
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45666777788888888899999999999999998876553 477777777742 23568999999999998888
Q ss_pred Hh
Q 002876 681 LE 682 (872)
Q Consensus 681 ~~ 682 (872)
++
T Consensus 118 f~ 119 (139)
T cd03567 118 LP 119 (139)
T ss_pred hc
Confidence 76
No 306
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.40 E-value=1.4e+02 Score=33.26 Aligned_cols=165 Identities=15% Similarity=0.174 Sum_probs=104.1
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHhccc-ccchh---hhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHH
Q 002876 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNAL-DAKEQ---HRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARST 111 (872)
Q Consensus 36 ~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i-~~~~~---~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~ 111 (872)
.+|...|..++.++-.......--...|++.. +.+.- .....+-.....++|..--.-...+..+|.++.-.+|-.
T Consensus 239 s~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~ 318 (1128)
T COG5098 239 SGLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCC 318 (1128)
T ss_pred HHHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHH
Confidence 56666677777653223333333345565532 21111 111112223344566555444566788888888888887
Q ss_pred HHHHHHHHHHhhcC----CC----CchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcc
Q 002876 112 ASQVVAKVAGIELP----HK----QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGM 183 (872)
Q Consensus 112 ~a~~l~~i~~~~~~----~~----~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l 183 (872)
..++.+.+..+... .. ....++..+.+.+.+..+..|.-|++++..|++-- .. . ...-..+...+...+
T Consensus 319 ~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~-sk-~-~~~r~ev~~lv~r~l 395 (1128)
T COG5098 319 FLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN-SK-T-VGRRHEVIRLVGRRL 395 (1128)
T ss_pred HHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc-cc-c-cchHHHHHHHHHHHh
Confidence 77777777654321 01 33566777777788889999999999999998753 22 2 233455666667777
Q ss_pred cCCCCCHHHHHHHHHHHHHhHh
Q 002876 184 NASESNNDVRLAATRALYNALG 205 (872)
Q Consensus 184 ~~~~~~~~vr~~al~~l~~~~~ 205 (872)
. |.+..||..|++.++.++.
T Consensus 396 q--Drss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 396 Q--DRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred h--hhhHHHHHHHHHHHHHHHh
Confidence 7 8999999999999998874
No 307
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=75.01 E-value=85 Score=30.54 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=56.8
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhcc-------------C---------------hhhHHHHHHHH
Q 002876 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFS-------------N---------------DMERDYIMRVV 224 (872)
Q Consensus 173 ~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~-------------~---------------~~~~~~il~~l 224 (872)
..+-..+++.+. +.++.+|..+++.+..++........ - +.+...++..+
T Consensus 42 ~~lK~~Il~~~~--~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~L 119 (239)
T PF11935_consen 42 NELKDRILSLWD--SENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRL 119 (239)
T ss_dssp HHHHHHHHHGGG--SSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHH
Confidence 344455666666 56889999999999888754211110 0 01123477777
Q ss_pred HHhhcCCC--HHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHH
Q 002876 225 CEATLSPE--VKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKA 268 (872)
Q Consensus 225 ~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 268 (872)
...+.++. +.+-.+++.+|..+++..|.++ +.+++.+...
T Consensus 120 l~~l~~~~i~~~~~~a~insL~~Iak~RP~~~----~~Il~~ll~~ 161 (239)
T PF11935_consen 120 LDVLQSPHISSPLLTAIINSLSNIAKQRPQFM----SRILPALLSF 161 (239)
T ss_dssp HHHHC-TT--HHHHHHHHHHHHHHHHHSGGGH----HHHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHhc
Confidence 77776554 7778889999999999888754 4445544433
No 308
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.83 E-value=90 Score=37.87 Aligned_cols=129 Identities=14% Similarity=0.115 Sum_probs=67.5
Q ss_pred HHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHH--hHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHH
Q 002876 694 TQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEK--YLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAF 771 (872)
Q Consensus 694 ~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~--~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 771 (872)
..+.++..++ ..+||..|++++=+|..++|..+.+ +-.-+...+...+......--+++.+++-..+..+..+-++
T Consensus 1000 ~~L~~~~~ds--r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lti 1077 (1610)
T KOG1848|consen 1000 VHLADLCEDS--RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTI 1077 (1610)
T ss_pred HHHHHHhccc--hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhH
Confidence 3444444555 5689999999999999999888765 33333333333333211000000000000011112233334
Q ss_pred HHHhhcccCC----CcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 002876 772 SGIFQGFKGS----PKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTL 826 (872)
Q Consensus 772 ~~l~~~~~~~----~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~ 826 (872)
.|+..-+.+. .....+...-+.+++++.....+ .+.++..+++.++.++....
T Consensus 1078 sgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~--~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1078 SGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSD--ISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc--CChHhHHHHHHHHHHHHHHH
Confidence 4443332211 01122334456677777777664 68899999999888877654
No 309
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=74.80 E-value=66 Score=29.19 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHhHhhchhhccChh--------hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHH
Q 002876 189 NNDVRLAATRALYNALGFAQANFSNDM--------ERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQD 260 (872)
Q Consensus 189 ~~~vr~~al~~l~~~~~~~~~~~~~~~--------~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~ 260 (872)
+...|..+++.+..+++..+..+.... .++.+.+.+......+++.+-..+++++..+...+...++..++.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888887765554444211 124455666666655668899999999999999998888888888
Q ss_pred HHHHHHH-HHhcCC--hhhHHHHHHHHHHHHH
Q 002876 261 IFNITAK-AVREDE--EPVALQAIEFWSSVCD 289 (872)
Q Consensus 261 l~~~~~~-~~~~~~--~~v~~~a~~~~~~l~~ 289 (872)
++..++. .+.+.. ...+..++|++..++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 8887766 444333 3567788999888886
No 310
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=74.41 E-value=22 Score=30.15 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHHHH
Q 002876 405 PLVNIALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYF 483 (872)
Q Consensus 405 ~~~~~i~~~l~~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~ 483 (872)
.+++.++|.+..++ . ...+..|.++...++.++...+ ..++.+..++..+++....... ...+..++..
T Consensus 2 ~~l~~lLP~l~~~L-~~s~~~d~~~a~ymIl~~La~k~~--------L~~~~l~~l~~~i~~~~~~~~~-~~~~l~~L~~ 71 (121)
T PF12397_consen 2 DILPRLLPFLLKGL-KSSSSPDLQAAAYMILSVLASKVP--------LSDEVLNALMESILKNWTQETV-QRQALICLIV 71 (121)
T ss_pred cHHHHHHHHHHHHH-ccCCcHHHHHHHHHHHHHHHhhcC--------CcHHHHHHHHHHHHhccccchh-HHHHHHHHHH
Confidence 35788999999999 7 7788999999999999999875 4556666666666666554322 3456666777
Q ss_pred HHHh
Q 002876 484 LAQG 487 (872)
Q Consensus 484 l~~~ 487 (872)
++..
T Consensus 72 l~q~ 75 (121)
T PF12397_consen 72 LCQS 75 (121)
T ss_pred HHHc
Confidence 7654
No 311
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=73.92 E-value=6 Score=25.33 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=24.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 002876 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMF 438 (872)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~l~ 438 (872)
.++.+...+ +++++.++..+++++++++
T Consensus 13 ~i~~L~~ll-~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELL-KSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHH-cCCCHHHHHHHHHHHHHHc
Confidence 577788888 8889999999999999875
No 312
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=73.81 E-value=53 Score=33.87 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHH--HHHHhhhhhHhhhHHHHHHHHhhh
Q 002876 581 LCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGA--LAYATGQDFLKYMPEFYKYVEMGL 658 (872)
Q Consensus 581 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~--l~~~~~~~~~~~~~~i~~~l~~~l 658 (872)
.++-|..+.....+.+ +.....+++..+-.+++++.-.|-+.|+..+.. +.....+...-.++.++|.|.+.-
T Consensus 319 FL~ElEEILe~iep~e-----Fqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~s 393 (457)
T KOG2085|consen 319 FLNELEEILEVIEPSE-----FQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNS 393 (457)
T ss_pred eHhhHHHHHHhcCHHH-----HHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHH
Confidence 3455556666555443 777778888888899998888888888877664 455566666667788888888765
Q ss_pred cC
Q 002876 659 QN 660 (872)
Q Consensus 659 ~~ 660 (872)
+.
T Consensus 394 k~ 395 (457)
T KOG2085|consen 394 KS 395 (457)
T ss_pred HH
Confidence 43
No 313
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=73.49 E-value=13 Score=29.60 Aligned_cols=60 Identities=12% Similarity=0.177 Sum_probs=43.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHH
Q 002876 661 FEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI 720 (872)
Q Consensus 661 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i 720 (872)
.+++.+|..|..+++.+++.++......-+.++..+.+.+.++..+...+-.++.++..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999998865555556889999999988843333333444444443
No 314
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=73.31 E-value=1.2e+02 Score=31.32 Aligned_cols=194 Identities=12% Similarity=0.175 Sum_probs=116.1
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcccccc-c-----hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhH
Q 002876 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV-E-----QDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (872)
Q Consensus 131 ~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l-~-----~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (872)
+++..|+..+..-+-..|..+..+++.+...-..... . ..+.+.++..++.+.. +++ +-..+-..+..++
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~d--ial~~g~mlRec~ 151 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPD--IALNCGDMLRECI 151 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STT--THHHHHHHHHHHT
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--Ccc--ccchHHHHHHHHH
Confidence 3667777777777777888888888877765322211 0 2344788888988887 333 3333444455544
Q ss_pred hhc--hh-hccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHh----hHhhHHHHHHHHHHHHhcCChhhH
Q 002876 205 GFA--QA-NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK----LAPYIQDIFNITAKAVREDEEPVA 277 (872)
Q Consensus 205 ~~~--~~-~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~v~ 277 (872)
.+- .. .+. +..+..+++..+.++.++...|+.++..++..+... +..+.+.++...-..+.+.+.-.+
T Consensus 152 k~e~l~~~iL~-----~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 152 KHESLAKIILY-----SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp TSHHHHHHHHT-----SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred hhHHHHHHHhC-----cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 321 00 111 112333566778899999999999999998877654 444556778877777788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhh--HHHHHHHHHhcccCCcccCCccchHhHHHHHHHHH
Q 002876 278 LQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPV--LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGL 355 (872)
Q Consensus 278 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~ 355 (872)
.+++.+++.+.... .+...+..|+.. -+..++..+.. ..-+++..|...++.
T Consensus 227 rqslkLL~ellldr-----------------~n~~vm~~yi~~~~nLkl~M~lL~d---------~sk~Iq~eAFhvFKv 280 (335)
T PF08569_consen 227 RQSLKLLGELLLDR-----------------SNFNVMTRYISSPENLKLMMNLLRD---------KSKNIQFEAFHVFKV 280 (335)
T ss_dssp HHHHHHHHHHHHSG-----------------GGHHHHHHHTT-HHHHHHHHHHTT----------S-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHch-----------------hHHHHHHHHHCCHHHHHHHHHHhcC---------cchhhhHHHHHHHHH
Confidence 99999999887521 122344444432 34445555542 112666667777766
Q ss_pred HHHH
Q 002876 356 VART 359 (872)
Q Consensus 356 l~~~ 359 (872)
+...
T Consensus 281 FVAN 284 (335)
T PF08569_consen 281 FVAN 284 (335)
T ss_dssp HHH-
T ss_pred HHhC
Confidence 6554
No 315
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=72.53 E-value=18 Score=28.29 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=49.7
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHH
Q 002876 648 PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFG 718 (872)
Q Consensus 648 ~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~ 718 (872)
..++..+...+.+..+.++|...+.|+..++...+..+..-.+.++..+-....++ +.++...++.++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~--~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDN--DESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCC--CccHHHHHHHHHh
Confidence 34555555555555667999999999999999988878777778888877776665 4555556665543
No 316
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=72.52 E-value=20 Score=31.38 Aligned_cols=79 Identities=11% Similarity=0.036 Sum_probs=57.1
Q ss_pred CchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccch-hhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhh
Q 002876 128 QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQ-DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGF 206 (872)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~-~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (872)
.=.+.+..|...+++.++.+...||.++..+++.+ +..+.. -....++..+...+.. ..++.|+..++..+..+...
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNC-G~~fh~evas~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNC-GTHFHDEVASREFMDELKDLIKT-TKNEEVRQKILELIQAWALA 115 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHC-CHHHHHHHhhHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHHHH
Confidence 33577888888888899999999999999999998 443311 1223444555554443 67889999999999998764
Q ss_pred ch
Q 002876 207 AQ 208 (872)
Q Consensus 207 ~~ 208 (872)
++
T Consensus 116 f~ 117 (142)
T cd03569 116 FR 117 (142)
T ss_pred hC
Confidence 43
No 317
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=72.47 E-value=1.4e+02 Score=34.45 Aligned_cols=227 Identities=11% Similarity=0.095 Sum_probs=108.5
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHH
Q 002876 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE 252 (872)
Q Consensus 173 ~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 252 (872)
..+...+..-+. .....--..|++++..++..+.+.. ......++.++..++.+..++.+..++.++..++....+
T Consensus 55 ~yL~~R~~kdl~--~~r~~~v~Iamea~~kLL~~C~eq~--n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d 130 (819)
T KOG1877|consen 55 TYLEERCYKDLR--RERFGSVKIAMEAYDKLLQACKEQI--NLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEED 130 (819)
T ss_pred HHHHHHHHHHHH--hccCcchhhHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhccc
Confidence 333344444444 2333333556677777666555444 123367888888888888899999999999998865432
Q ss_pred h--hHhhHHHHHHHHHHHHhc-CC----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHH-hhhhhHHHH
Q 002876 253 K--LAPYIQDIFNITAKAVRE-DE----EPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIK-HALPVLVPL 324 (872)
Q Consensus 253 ~--~~~~~~~l~~~~~~~~~~-~~----~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~ 324 (872)
. ..-..+.++..+.....+ .+ ..++...+..+..+..... ..+ +. ....+ .+...++|.
T Consensus 131 ~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv--~d~----------l~-~ti~e~~h~d~ivps 197 (819)
T KOG1877|consen 131 GPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWLTV--SDH----------LA-ATIWEPQHMDKIVPS 197 (819)
T ss_pred CchhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHHHHHH--hhh----------hh-hhhhhhhhhccchhh
Confidence 1 011123333333333332 22 2355556655555443220 000 00 01111 125566676
Q ss_pred HHHHHhccc-----CCc------c---cCCccchHhHHHHHHHHHHHHHc--CCcchhchHHHHHhhhcCcchhhh-HHH
Q 002876 325 LLETLLKQE-----EDQ------D---QDEGAWNIAMAGGTCLGLVARTV--GDDIVPLVMPFVEENITKQEWRQR-EAA 387 (872)
Q Consensus 325 l~~~l~~~~-----~d~------~---~~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~l~~~l~~~~~~~~~~~r-~aa 387 (872)
+...+...+ +.+ . -.+..-.+...|..|+..+.... |..+-..+-|.+...-.+.-|..- .-|
T Consensus 198 l~~~l~~~e~~~~~~S~s~~~~~~~~~a~~~~~~p~vla~~cl~~l~~~A~~g~~iR~~l~pl~~~~d~h~~w~p~n~fa 277 (819)
T KOG1877|consen 198 LLFELQSIENLGKRESDSRIRTFSLLAAGDKTSDPKVLAERCLRELLGRAKFGTNIRNALKPLLSHLDFHELWTPPNGFA 277 (819)
T ss_pred HHHhhcchhhcccccCcccccCccccccCCcccCcchhHHHHHHHhhccccccchHHHHHHHHHhccccceeecCCCccc
Confidence 666555433 100 0 00111124556677777776643 434443444444433333446555 444
Q ss_pred HHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 002876 388 TYAFGSILEGPSPEKLVPLVNIALNFMLT 416 (872)
Q Consensus 388 l~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 416 (872)
+.++..+.-..........+..++.++..
T Consensus 278 v~~~~~vi~~iq~q~s~~v~~~li~hLd~ 306 (819)
T KOG1877|consen 278 VHVFKIVIYLIQRQYSYFVIQELINHLDN 306 (819)
T ss_pred hHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 55555544322222223334455554443
No 318
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=72.38 E-value=1.3e+02 Score=31.31 Aligned_cols=90 Identities=12% Similarity=0.157 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCcchhhHhh-HhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHH
Q 002876 576 EIQGLLCGCLQVIIQKLGSSEQTKYVFM-QYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYV 654 (872)
Q Consensus 576 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l 654 (872)
++...++.+|+.++..-.. +. ..-+.++..+...+.+. .-..++.+|+-++.-++..+.++++.++..+
T Consensus 212 D~~~~~~~~Ls~LisYh~~-------~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kL 281 (356)
T PF03542_consen 212 DLQVCVFPVLSALISYHSH-------FSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKL 281 (356)
T ss_pred HHHHHHHHHHHHHHHHHHh-------cCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4555566677766544321 22 23456777777777652 3456788888888888888888888888777
Q ss_pred HhhhcCCChhhHHHHHHHHHHHHH
Q 002876 655 EMGLQNFEDYQVCAITVGVVGDLC 678 (872)
Q Consensus 655 ~~~l~~~~~~~v~~~a~~~l~~l~ 678 (872)
.+..... .+....++.+..++
T Consensus 282 s~i~tt~---~~Ai~ILEFLs~L~ 302 (356)
T PF03542_consen 282 SKISTTP---NMAIHILEFLSSLS 302 (356)
T ss_pred Hhhccch---hhHHHHHHHHHHHh
Confidence 6544322 33333444444443
No 319
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=72.19 E-value=15 Score=32.99 Aligned_cols=127 Identities=13% Similarity=0.180 Sum_probs=68.4
Q ss_pred CChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchh----hccChhhHH
Q 002876 143 LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA----NFSNDMERD 218 (872)
Q Consensus 143 ~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~----~~~~~~~~~ 218 (872)
.++.+|..++.++..+.+.. ++.+ ...+...+..++ . +.+.+-...++.++..++...++ .+.. +
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~-~~~~-~~~~~~~i~~~~---~--~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~----e 85 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAA-REEF-KEKISDFIESLL---D--EGEMDSLIIAFSALTALFPGPPDVGSELFLS----E 85 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHH---C--CHHCCHHHHHHHHHHHHCTTTHHHHHHHCCT----T
T ss_pred CCHhHHHHHHHHHHHHHHHh-HHHH-HHHHHHHHHHHH---c--cccchhHHHHHHHHHHHhCCCHHHHHHHHhh----h
Confidence 45678888888888886443 3333 233333333333 3 22233455666666665543332 2222 3
Q ss_pred HHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHhH--HhhHhhHHHHHHHHHHHHh-cCChh-hHHHHHHH
Q 002876 219 YIMRVVCEATL--SPEVKIRQAAFECLVAISSTYY--EKLAPYIQDIFNITAKAVR-EDEEP-VALQAIEF 283 (872)
Q Consensus 219 ~il~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~--~~~~~~~~~l~~~~~~~~~-~~~~~-v~~~a~~~ 283 (872)
.+++.+..... .++..+...+++++..-+.... .++ ...-++++....+ +.++. ++..|.-.
T Consensus 86 g~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I---~~~~~~~L~~~~~~~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 86 GFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFI---SKNYVSWLKELYKNSKDDSEIRVLAAVG 153 (157)
T ss_dssp THHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCC---HHHCHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred hHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHH---HHHHHHHHHHHHccccchHHHHHHHHHH
Confidence 45666666665 6788888999999988664322 222 2234445555553 44444 66665533
No 320
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.00 E-value=2.5e+02 Score=34.51 Aligned_cols=154 Identities=13% Similarity=0.179 Sum_probs=96.2
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcCC--CCchhHHHHHHHhhcCC---ChhHHHHHHHHHHHhhhhccccccchhhHHHH
Q 002876 101 LSSPAHDARSTASQVVAKVAGIELPH--KQWPELIGALLSNIHQL---PPHTKQATLETLGYICEEVSSDAVEQDHVNKI 175 (872)
Q Consensus 101 l~~~~~~vr~~~a~~l~~i~~~~~~~--~~~~~l~~~l~~~l~~~---~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i 175 (872)
...+..++|...-.++-.+....+.+ ..|+.+++.+-...... ...+.+.+..++..|+.+. -.-++......+
T Consensus 851 ~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDf-LqSLp~sci~~l 929 (1610)
T KOG1848|consen 851 NSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDF-LQSLPTSCILDL 929 (1610)
T ss_pred hcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcc-hhcCChHHHHHH
Confidence 33455566665557776666554321 25998888877555443 3355667788888887765 233334555666
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchh-hccCh------------------------hhHHHHHHHHHHhhcC
Q 002876 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQA-NFSND------------------------MERDYIMRVVCEATLS 230 (872)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~-~~~~~------------------------~~~~~il~~l~~~~~~ 230 (872)
+..+...-.. ..|.++-..|+..|=.+-+++.. .+... .-|-.++..+.++..|
T Consensus 930 idtl~~fs~Q-ktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen 930 IDTLLVFSRQ-KTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred HHHHHHHHhh-hccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence 6666655443 45666767777766555554432 11110 0112245667778889
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHhhHh
Q 002876 231 PEVKIRQAAFECLVAISSTYYEKLAP 256 (872)
Q Consensus 231 ~~~~~r~~~~~~l~~l~~~~~~~~~~ 256 (872)
+.++||..|++++..++..++..+.+
T Consensus 1009 sr~eVRngAvqtlfri~~Shg~~l~~ 1034 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGT 1034 (1610)
T ss_pred chHHHhhhHHHHHHHHHhhhcccCCh
Confidence 99999999999999999988876665
No 321
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=71.07 E-value=72 Score=27.93 Aligned_cols=77 Identities=8% Similarity=0.070 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHhhhhhHhhhH--HHHHH-HHhhhcCCC--hhhHHHHHHHHHHHHHHH
Q 002876 607 DQMMGLFLRVFAI-RSATAHEEAMLAIGALAYATGQDFLKYMP--EFYKY-VEMGLQNFE--DYQVCAITVGVVGDLCRA 680 (872)
Q Consensus 607 ~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~-l~~~l~~~~--~~~v~~~a~~~l~~l~~~ 680 (872)
...+..+.+-++. +++.+...|+..+..+++.+|..|...+. .++.. |.+.+.... ...|+...+.++......
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 3455556555553 56777788999999999999998886553 46665 666665322 347899999999999888
Q ss_pred Hhc
Q 002876 681 LED 683 (872)
Q Consensus 681 ~~~ 683 (872)
++.
T Consensus 117 f~~ 119 (141)
T cd03565 117 FRG 119 (141)
T ss_pred hCC
Confidence 864
No 322
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=70.46 E-value=1.8e+02 Score=32.33 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=45.7
Q ss_pred hHhHHHHHHHHHHHHHc-C----CcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCC
Q 002876 344 NIAMAGGTCLGLVARTV-G----DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSP 400 (872)
Q Consensus 344 ~~r~~a~~~l~~l~~~~-~----~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~ 400 (872)
.++-+..+.+..+++.+ + +.+.|.+.....-.+.+.+|-+++-|+.+|+.+++..+.
T Consensus 495 ~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~~ 556 (559)
T PF14868_consen 495 HVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTSH 556 (559)
T ss_pred cchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCCc
Confidence 47888889999998865 3 245666666666778899999999999999999998753
No 323
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=69.72 E-value=50 Score=33.69 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhh--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHh
Q 002876 605 YADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYM--PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALE 682 (872)
Q Consensus 605 ~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 682 (872)
.....+..+++-+++.++.+.-.|+..++.++..||+.|..-+ ..+...+...+.+...+.|+...-.++...+..++
T Consensus 42 ~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 42 GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 3556788888889999999999999999999999999887544 34667777666654455665554445555554443
No 324
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=69.06 E-value=51 Score=31.42 Aligned_cols=75 Identities=13% Similarity=0.105 Sum_probs=51.0
Q ss_pred CchhHHH-HHHHhhcC-CChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhH
Q 002876 128 QWPELIG-ALLSNIHQ-LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (872)
Q Consensus 128 ~~~~l~~-~l~~~l~~-~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (872)
+.|-.+. .+.....+ +.+..|.+++-+++.+.+.-+.+.+..-...+|+|.++..+. .++..-+..|.-++..++
T Consensus 120 ~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime--~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 120 HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME--SGSELSKTVATFILQKIL 196 (293)
T ss_pred cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh--cccHHHHHHHHHHHHHHh
Confidence 4454443 33333333 346789999999999998764444422345788999999998 577777778887777765
No 325
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=67.13 E-value=41 Score=31.48 Aligned_cols=83 Identities=13% Similarity=0.171 Sum_probs=56.4
Q ss_pred HHHHHHHHHc-CCcchhchHHHHHhhhcCcc-hhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHH
Q 002876 351 TCLGLVARTV-GDDIVPLVMPFVEENITKQE-WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKD 428 (872)
Q Consensus 351 ~~l~~l~~~~-~~~~~~~l~~~l~~~~~~~~-~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~ 428 (872)
..++.++..+ +-...|.+++.......+.+ |..|-+...++...-+.. +...+++.+-..+ .|.++.|+.
T Consensus 101 ~vvD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~~-------~~~~if~i~E~~l-~d~e~fV~K 172 (222)
T COG4912 101 AVVDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKTL-------DLLEIFEIIELLL-GDKEFFVQK 172 (222)
T ss_pred HHHHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCcc-------chhHHHHHHHHHc-cChHHHHHH
Confidence 3455666655 34667777777755455544 666665555555443332 2346778888888 999999999
Q ss_pred HHHHHHHHhhhhc
Q 002876 429 TTAWTLGRMFEFL 441 (872)
Q Consensus 429 ~a~~~l~~l~~~~ 441 (872)
+.-|+|.+++.+.
T Consensus 173 AigWaLrq~~k~~ 185 (222)
T COG4912 173 AIGWALRQIGKHS 185 (222)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999999954
No 326
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=67.10 E-value=31 Score=29.23 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=51.9
Q ss_pred cchhchHHHHHhhhc-CcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 002876 363 DIVPLVMPFVEENIT-KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (872)
Q Consensus 363 ~~~~~l~~~l~~~~~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~ 441 (872)
+.++.++|++...+. +.....|.++++.++.++.... --.+.+..++..+.... ..... ...+..++..++..-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~-~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNW-TQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhcc-ccchh--HHHHHHHHHHHHHcc
Confidence 457788999999888 6667889999999999987653 22344566666666655 33333 466777888777644
No 327
>PF14961 BROMI: Broad-minded protein
Probab=64.66 E-value=1.4e+02 Score=35.98 Aligned_cols=75 Identities=9% Similarity=0.112 Sum_probs=56.6
Q ss_pred hhHHHHHHHhhcCCC-hhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhch
Q 002876 130 PELIGALLSNIHQLP-PHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (872)
Q Consensus 130 ~~l~~~l~~~l~~~~-~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (872)
++=++.+.+.+.... .++|..|++.|....- .+.++.+.++.+...+..++. |+|+.+...+++.....+...+
T Consensus 160 qe~lq~i~d~ld~~~P~evR~eAlq~Lc~~p~---SDVls~E~W~~L~~~L~~~Ls--DpD~~is~~~L~f~Ak~fssSp 234 (1296)
T PF14961_consen 160 QEQLQLIADKLDPGQPKEVRLEALQILCSAPP---SDVLSCESWSVLRENLTDALS--DPDPEISDASLRFHAKMFSSSP 234 (1296)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh---hhccccccHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccCCc
Confidence 344455666665443 4789999998865543 466667889999999999999 9999999999999988765444
Q ss_pred h
Q 002876 209 A 209 (872)
Q Consensus 209 ~ 209 (872)
-
T Consensus 235 l 235 (1296)
T PF14961_consen 235 L 235 (1296)
T ss_pred h
Confidence 3
No 328
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=64.42 E-value=1.8e+02 Score=30.16 Aligned_cols=94 Identities=19% Similarity=0.265 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHH
Q 002876 189 NNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKA 268 (872)
Q Consensus 189 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 268 (872)
..++......+|..++.|-.. ++ ....+.++..+...+.+ ...+.+..+|.-.+-..|..+.+.++.++.-+-+.
T Consensus 210 ~~D~~~~~~~~Ls~LisYh~~-~~-k~~qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i 284 (356)
T PF03542_consen 210 RADLQVCVFPVLSALISYHSH-FS-KQEQDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKI 284 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cC-HhHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 457788888888888866433 32 23347788888776644 23455667777667777877777777777655433
Q ss_pred HhcCChhhHHHHHHHHHHHHH
Q 002876 269 VREDEEPVALQAIEFWSSVCD 289 (872)
Q Consensus 269 ~~~~~~~v~~~a~~~~~~l~~ 289 (872)
.. ...+....+||+..++.
T Consensus 285 ~t--t~~~Ai~ILEFLs~L~~ 303 (356)
T PF03542_consen 285 ST--TPNMAIHILEFLSSLSR 303 (356)
T ss_pred cc--chhhHHHHHHHHHHHhh
Confidence 33 33477789999999886
No 329
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=64.33 E-value=2.6e+02 Score=31.84 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHcCCcchhc--hHHHHHhhhc---CcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhcc
Q 002876 346 AMAGGTCLGLVARTVGDDIVPL--VMPFVEENIT---KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ 420 (872)
Q Consensus 346 r~~a~~~l~~l~~~~~~~~~~~--l~~~l~~~~~---~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~ 420 (872)
|..|..+|..|...+-..++|. +..+..+-+. +...+.+.-.++++-. .+......+++.+.... .
T Consensus 244 k~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~WyfE~--------~LK~ly~rfievLe~lS-~ 314 (988)
T KOG2038|consen 244 KRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWYFEH--------ELKILYFRFIEVLEELS-K 314 (988)
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHHHHH--------HHHHHHHHHHHHHHHHc-c
Confidence 4445666666666553344443 3333333222 2223333333433322 12333345555555555 8
Q ss_pred CCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHh
Q 002876 421 DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (872)
Q Consensus 421 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
|+-+.|+..++..+..+...-| +.-..++..++..+.| +.++...|...|..+...
T Consensus 315 D~L~~vk~raL~ti~~lL~~kP-----------EqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~ 371 (988)
T KOG2038|consen 315 DPLEEVKKRALKTIYDLLTNKP-----------EQENNLLVLLVNKLGDPQNKIASKASYLLEGLLAK 371 (988)
T ss_pred ccHHHHHHHHHHHHHHHHhCCc-----------HHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhh
Confidence 8889999999888877766543 3445788899999988 678888888888888654
No 330
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.94 E-value=2.1e+02 Score=30.70 Aligned_cols=129 Identities=9% Similarity=0.181 Sum_probs=69.7
Q ss_pred ChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHH-HHHH
Q 002876 144 PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERD-YIMR 222 (872)
Q Consensus 144 ~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~-~il~ 222 (872)
++..|...+.+|-.+-.. ..+ ....++..++..+. -++...|..+..-+...+..+...-.+. ..+ .+-.
T Consensus 33 p~~Lr~~i~~~LiLLrNk---~~i---~~~~LL~lff~l~~--~~dk~lRkllythiv~~Ikn~n~~~kn~-klnkslq~ 103 (616)
T KOG2229|consen 33 PPELREKIVKALILLRNK---NLI---VAEDLLELFFPLLR--CGDKNLRKLLYTHIVTTIKNINKKHKND-KLNKSLQA 103 (616)
T ss_pred CHHHHHHHHHHHHHHhcc---CcC---CHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHHHhhcccc-hHHHHHHH
Confidence 567888777777655432 222 23455556666555 5667778777666655554332222111 112 3445
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 002876 223 VVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWS 285 (872)
Q Consensus 223 ~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~ 285 (872)
.++..+.++++.....++..++.+-+..-.. .. .-+.++....-+..+.+...++.|+.
T Consensus 104 ~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~-d~---~tV~i~~~acf~~~~ki~vs~l~FfL 162 (616)
T KOG2229|consen 104 FMFSMLDQSDSTAAKMALDTMIELYKRNIWN-DS---KTVNIITTACFSKVPKILVSGLRFFL 162 (616)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHhcccc-cc---hhHHHHHHHHhccCcHHHHhhhHHhc
Confidence 5677777778777778888888876654322 11 11222222233445556666665543
No 331
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=63.89 E-value=1.9e+02 Score=30.08 Aligned_cols=197 Identities=12% Similarity=0.012 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhh----hcc
Q 002876 89 VKAQIKSFILKTLSSP-AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE----EVS 163 (872)
Q Consensus 89 ~~~~i~~~ll~~l~~~-~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~----~~~ 163 (872)
.-..+.+.+...+..+ |+.....+..++..-+... ....-..++..+...+++..+.+|++-+..++..+. ...
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 4455667777777765 6666766666666555444 213457788999999999888899999999998876 110
Q ss_pred ccccchhhHHHHHHHHHhcccCCCCCHHH--HHHHHHHHHHhHhhchhhccCh---------hhHHHHH--HHHHHhhcC
Q 002876 164 SDAVEQDHVNKILTAVVQGMNASESNNDV--RLAATRALYNALGFAQANFSND---------MERDYIM--RVVCEATLS 230 (872)
Q Consensus 164 ~~~l~~~~~~~i~~~l~~~l~~~~~~~~v--r~~al~~l~~~~~~~~~~~~~~---------~~~~~il--~~l~~~~~~ 230 (872)
.... ....+.++..+-+...+.-+.... -..|.-.+. ............ ...+.++ +-+..-+
T Consensus 98 ~~~~-~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl-- 173 (339)
T PF12074_consen 98 LKFA-EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL-- 173 (339)
T ss_pred HHHH-HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--
Confidence 1111 233444444444444421122111 011111111 000000000000 0001111 1111111
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHhhHhhH-HHHHHHHHHHHhcC--ChhhHHHHHHHHHHHHHH
Q 002876 231 PEVKIRQAAFECLVAISSTYYEKLAPYI-QDIFNITAKAVRED--EEPVALQAIEFWSSVCDE 290 (872)
Q Consensus 231 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~--~~~v~~~a~~~~~~l~~~ 290 (872)
.+++.....++.+..+....++...+.. ..+.+.++..+.+. ..++|..|++.+..+...
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS 236 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 3445566677777777766655444333 45566666666666 788999999988887764
No 332
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=63.66 E-value=12 Score=35.34 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 002876 794 ILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAI 866 (872)
Q Consensus 794 i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 866 (872)
+++++....++ ...+.+|-++++.||.+.++-..+...|+-.+++| ++.-+.++...+.-|.+|.++...|
T Consensus 125 lYpfL~Tt~~~-r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV-PlCLrime~GSelSKtvA~fIlqKI 195 (293)
T KOG3036|consen 125 LYPFLNTTSKS-RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV-PLCLRIMESGSELSKTVATFILQKI 195 (293)
T ss_pred hHHhhhccccC-CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH-HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 56666555554 46788999999999999998766777888877644 4555577788999999999987765
No 333
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=63.03 E-value=29 Score=26.09 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHhhCCCCCCcchHHH--HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 002876 383 QREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (872)
Q Consensus 383 ~r~aal~~l~~l~~~~~~~~~~~~~--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~ 441 (872)
...+++.+++.++... .-.+++ ..+++.+++...+.+...+|-++.++++-++...
T Consensus 3 ~lKaaLWaighIgss~---~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSP---LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcCh---HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 3578899999997643 223333 2577777777646789999999999999888754
No 334
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=61.81 E-value=93 Score=25.98 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=51.4
Q ss_pred CCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHH-HHHHHHHh----cccCCCCCHHHHHHHHHHHH
Q 002876 127 KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVN-KILTAVVQ----GMNASESNNDVRLAATRALY 201 (872)
Q Consensus 127 ~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~-~i~~~l~~----~l~~~~~~~~vr~~al~~l~ 201 (872)
....+++..|...+.+.++.+..-||.++..+++.+ ++.+...... ..+..++. .....+.+..||..+.+.+.
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~-g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNC-GERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc-cHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 467889999999999999999999999999999998 4333111111 11111211 12212568899999998887
Q ss_pred Hh
Q 002876 202 NA 203 (872)
Q Consensus 202 ~~ 203 (872)
.+
T Consensus 112 ~w 113 (115)
T cd00197 112 LW 113 (115)
T ss_pred HH
Confidence 65
No 335
>PLN03205 ATR interacting protein; Provisional
Probab=61.17 E-value=97 Score=31.73 Aligned_cols=138 Identities=13% Similarity=0.136 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcccc--ccc---hhhHHHHHHHHHhccc
Q 002876 110 STASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSD--AVE---QDHVNKILTAVVQGMN 184 (872)
Q Consensus 110 ~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~--~l~---~~~~~~i~~~l~~~l~ 184 (872)
....++...+.+..++-.....+++.|+++..-++..+...++++|..+.+++-.+ .++ ...+..++....+...
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv 381 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIAS 381 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHh
Confidence 45566666666665543467889999999998888888888999999888775221 221 2345666666665533
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhchhhccChhh-HHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHH
Q 002876 185 ASESNNDVRLAATRALYNALGFAQANFSNDME-RDYIMRVVCEATL-SPEVKIRQAAFECLVAISS 248 (872)
Q Consensus 185 ~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~~il~~l~~~~~-~~~~~~r~~~~~~l~~l~~ 248 (872)
. .....||..|+.++..++.........+.. ...+++.+.++++ .....+++.++..|.-++.
T Consensus 382 ~-~TEE~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 382 I-RTEEDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred c-cchhheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 2 567788999998887765321111000000 0235555555553 3345667777777665554
No 336
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=60.34 E-value=79 Score=26.71 Aligned_cols=72 Identities=7% Similarity=0.042 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHH--Hhc---------CChhhHHHHHHHHH
Q 002876 217 RDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKA--VRE---------DEEPVALQAIEFWS 285 (872)
Q Consensus 217 ~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--~~~---------~~~~v~~~a~~~~~ 285 (872)
...++..|..-+++.++.|+..++++|.-++...++.|...+..=...+... +.. ....||..|-|++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 4578888888899999999999999999999987766665544322222111 111 22346777777666
Q ss_pred HHH
Q 002876 286 SVC 288 (872)
Q Consensus 286 ~l~ 288 (872)
.+.
T Consensus 116 ~if 118 (122)
T cd03572 116 AIF 118 (122)
T ss_pred HHh
Confidence 554
No 337
>PF14961 BROMI: Broad-minded protein
Probab=60.16 E-value=1.8e+02 Score=35.01 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=59.0
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhh
Q 002876 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKL 254 (872)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 254 (872)
++.+.+.+.. +...+||..|++.|.. .-+++....+.|+.+.+.+...+.|+|+.+...+++......+..|-.+
T Consensus 163 lq~i~d~ld~-~~P~evR~eAlq~Lc~---~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 163 LQLIADKLDP-GQPKEVRLEALQILCS---APPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHHHhcCC-CCchHHHHHHHHHHhc---CChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 3556666653 6778999999999887 4455555556788999999999999999999999999999887765444
No 338
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=60.03 E-value=18 Score=27.10 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHH-hhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHH
Q 002876 625 HEEAMLAIGALAYA-TGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRAL 681 (872)
Q Consensus 625 ~~~a~~~l~~l~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 681 (872)
.+.++-++|+++.. .|-.+.+ -..+++.+.+...+.+...+|-.++.+++-+++..
T Consensus 4 lKaaLWaighIgss~~G~~lL~-~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLD-ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHh-hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 45788899999754 3333332 12588999988888888899999999999887653
No 339
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.91 E-value=94 Score=30.88 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=45.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 002876 222 RVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDE 290 (872)
Q Consensus 222 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~ 290 (872)
.-+.+++.+.+|.+|+.|.+.+..+.......+..+-...++.+.+.+.+.++ ...|...+..++..
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 34566778899999999999988877664444445555667766666666555 44556666666653
No 340
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=59.57 E-value=97 Score=31.77 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=62.9
Q ss_pred hhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCc
Q 002876 374 ENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (872)
Q Consensus 374 ~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 453 (872)
...+.++|..-...+--++. . ++. -...+..+.+.+ ++.++.|.-.|+.+++.+...++.... ..+..
T Consensus 19 e~nT~enW~~IlDvCD~v~~----~-~~~----~kd~lk~i~KRl-n~~dphV~L~AlTLlda~~~NCg~~~r--~EVsS 86 (462)
T KOG2199|consen 19 EKNTSENWSLILDVCDKVGS----D-PDG----GKDCLKAIMKRL-NHKDPHVVLQALTLLDACVANCGKRFR--LEVSS 86 (462)
T ss_pred cccccccHHHHHHHHHhhcC----C-Ccc----cHHHHHHHHHHh-cCCCcchHHHHHHHHHHHHHhcchHHH--HHHhh
Confidence 44556789754444422221 1 111 256778888999 999999999999999999998863210 00111
Q ss_pred cchHHHHHHHHHhccCChhHHHHHHHHHHHHHHhccc
Q 002876 454 GNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFED 490 (872)
Q Consensus 454 ~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~ 490 (872)
..+..-+..++.. +.+++|+.+....+..+.+.|..
T Consensus 87 r~F~~el~al~~~-~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 87 RDFTTELRALIES-KAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred hhHHHHHHHHHhh-cccHHHHHHHHHHHHHHHHHhcc
Confidence 1222222233332 23688888888888888887653
No 341
>PHA01351 putative minor structural protein
Probab=59.57 E-value=2.9e+02 Score=30.85 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHH----HHHHHHHHHHhccccccHHHHHHHHHHHccCCC
Q 002876 629 MLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITV----GVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQ 704 (872)
Q Consensus 629 ~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~----~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 704 (872)
..++...++..+.+|..++..++.-++..+.+. +.....++ ..+..++. +-.+...+|.+++.+..++.+-+
T Consensus 121 ~~s~~~~~~~i~n~~~q~~~~~isd~~~~~~~~--~~~i~~~l~~~~~~l~~~i~--p~~i~r~lp~~vdklaellpef~ 196 (1070)
T PHA01351 121 INSAYSFFQNVANDFAQIISGVISDFLNFFGAN--MKHISNAISQLSQFLSPFIA--PITIGKFLPVIVDKLAEILPEFE 196 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhcchhHHHHHHHHHHHHH--HHHHHccCchHHHHHHHhCccce
Confidence 334444444555555555555555555544432 11111122 22222111 11233456677788877776543
Q ss_pred CCC---CCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHh
Q 002876 705 LHR---SVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAE 744 (872)
Q Consensus 705 ~~~---~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~ 744 (872)
.+- ..-...---+|.|.+.+++....++..+-..+...++
T Consensus 197 i~lapvg~g~k~~ik~g~i~k~~~e~~~d~lkdi~de~~tt~k 239 (1070)
T PHA01351 197 IDLAPVGLGGKIPIKFGEIIKAFAETSVDFLNEIRDELATTLK 239 (1070)
T ss_pred ecccccccCccceehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1111122357788888877777777665555554443
No 342
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=59.31 E-value=2.9e+02 Score=30.79 Aligned_cols=282 Identities=16% Similarity=0.124 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHH
Q 002876 346 AMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNH 425 (872)
Q Consensus 346 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~ 425 (872)
.......+..+....+...+|.+-.++.+++=++++-..+-+.-+...++.....+-...++..+. .+++.+ ..+..
T Consensus 245 Y~~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~-~Lik~l-p~~~~- 321 (559)
T PF14868_consen 245 YQHVLVHLCTFIASLSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLA-HLIKSL-PSSSY- 321 (559)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-HHHHHc-CCcch-
Confidence 334445555555556666778887778777777887777777777666776553233333444444 444555 22221
Q ss_pred HHHHHHHHHHHhhhhccCCCCC------CcccCccchHHHHHH-HHHhccCC--hhHHHHHHHHHHHHHHhcccCCCCCC
Q 002876 426 VKDTTAWTLGRMFEFLHGSTLE------TPIINQGNCQQIISV-LLQSMKDV--PNVAEKACGALYFLAQGFEDAISPSS 496 (872)
Q Consensus 426 vr~~a~~~l~~l~~~~~~~~~~------~~~~~~~~~~~il~~-l~~~l~d~--~~v~~~a~~al~~l~~~~~~~~~~~~ 496 (872)
....-...++++.....++... ++...... ..+... .++.+.+. .++.......-..+++.+... +.
T Consensus 322 ~~~~L~~LL~Rl~~~m~~~~q~~~v~~f~p~~~~~n-~~lw~~~~~~~L~~~lr~~~~~~i~~~~~~~~~~~~~~---~~ 397 (559)
T PF14868_consen 322 QLINLSILLRRLFFLMAPDHQSEFVQDFSPSAETEN-LLLWEGFPLNALSDELRKQIVQEIFTLCFAFCQKWLSP---SS 397 (559)
T ss_pred hHhhHHHHHHHHHHhcCHHHHHHHHHhcCccccccc-hHHHHhccHHhCCHHHHHHHHHHHHHHHHHHHHHhccc---CC
Confidence 2222444566665554311000 00000001 111111 12333331 222223333333344444321 12
Q ss_pred CCchhHHHHHHHH---HHhhccCCc-hhhhhHHHHHHHHHHHHHccc---cCcHHHHHHHHHHHHHHHHHHHhhhcCChh
Q 002876 497 PLTPFFQEIVQAL---LTVTHREDA-GESRLRTAAYETLNEVVRCST---DETAPMVMQLVPLIMMELHQTLEAQKLSSD 569 (872)
Q Consensus 497 ~l~~~l~~i~~~l---~~~l~~~~~-~~~~v~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 569 (872)
.-...++..+-.+ +........ .+.+-+...++.+..+-.... ....+++..++..++..+....+. ..++
T Consensus 398 ~s~g~l~~~~~~LsalL~~c~~~~~~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~~~~~~--l~~~ 475 (559)
T PF14868_consen 398 CSLGELGQLNFALSALLQVCNSSGSTIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQTLSLLLSLLSFFIQL--LDPQ 475 (559)
T ss_pred cCcchHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHHHHHh--cChH
Confidence 2222333333333 333322211 123333455666665554431 123355555555555544333210 0011
Q ss_pred HHHH-H------------HHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 002876 570 EREK-Q------------NEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALA 636 (872)
Q Consensus 570 ~~~~-~------------~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~ 636 (872)
+-+. . ..++-.++..++.+....-+.+ .-.+..+.+...+-.+|.++++-+...|+.+++.++
T Consensus 476 ~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~----~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FA 551 (559)
T PF14868_consen 476 LIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPES----DQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFA 551 (559)
T ss_pred HHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCcc----ccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 0000 0 0122223333333333222221 011344556666667788899999999999999998
Q ss_pred HHhh
Q 002876 637 YATG 640 (872)
Q Consensus 637 ~~~~ 640 (872)
....
T Consensus 552 e~T~ 555 (559)
T PF14868_consen 552 ERTS 555 (559)
T ss_pred ccCC
Confidence 7543
No 343
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.37 E-value=4.7e+02 Score=32.92 Aligned_cols=132 Identities=12% Similarity=0.162 Sum_probs=88.6
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhh-hHHHHHHHHhhhcC---C------Chh--hHHHHHHHHHHHHHH
Q 002876 612 LFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKY-MPEFYKYVEMGLQN---F------EDY--QVCAITVGVVGDLCR 679 (872)
Q Consensus 612 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~---~------~~~--~v~~~a~~~l~~l~~ 679 (872)
.+-....+....+|..++..+=.+....|..|.+. ...++..++.+... + ++| .....|+..+.++..
T Consensus 1178 ~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~ 1257 (1514)
T KOG0929|consen 1178 QLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFT 1257 (1514)
T ss_pred hhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333445566789999999999999999888754 44555555544432 1 122 223345555555555
Q ss_pred HHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHH-hHHHHHHHHHHHHhh
Q 002876 680 ALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEK-YLMYAMPMLQSAAEL 745 (872)
Q Consensus 680 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~-~l~~il~~l~~~l~~ 745 (872)
.+-+.+...++.++..+..++..+ +..+......|+..+....|..|.. -++++...+.++++.
T Consensus 1258 ~~~~~l~~lL~~~~~ll~~ci~~~--n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~ 1322 (1514)
T KOG0929|consen 1258 QFFKQLNNLLPKVLGLLVGCIKQD--NQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKT 1322 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc--chhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHh
Confidence 555556677788888888888888 6677788899999999999988764 356666666666544
No 344
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=58.37 E-value=1.1e+02 Score=25.56 Aligned_cols=73 Identities=10% Similarity=0.005 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHH--HHHHHHhh-----hcCCChhhHHHHHHHHHHHH
Q 002876 605 YADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPE--FYKYVEMG-----LQNFEDYQVCAITVGVVGDL 677 (872)
Q Consensus 605 ~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--i~~~l~~~-----l~~~~~~~v~~~a~~~l~~l 677 (872)
....++..+..-+++.++.+.-.++.++..+++.+|+.|..++.. ++..+++. .....+..||..+..++...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 456678888888888888899999999999999999988876643 33333221 11123457777777766543
No 345
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=57.57 E-value=3e+02 Score=30.38 Aligned_cols=98 Identities=13% Similarity=0.240 Sum_probs=58.0
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHH------HhhcCCChhHHHHHHHHHHHhhhhcccc--ccc
Q 002876 97 ILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALL------SNIHQLPPHTKQATLETLGYICEEVSSD--AVE 168 (872)
Q Consensus 97 ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~------~~l~~~~~~~r~~al~~l~~i~~~~~~~--~l~ 168 (872)
++....+-++.+|..+...++-... ..|+.+-... =.|.+....+|.....++-.++... |. .+
T Consensus 280 fvsRy~Dv~d~IRv~c~~~L~dwi~------lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~-p~~d~i- 351 (740)
T COG5537 280 FVSRYIDVDDVIRVLCSMSLRDWIG------LVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRI-PHTDAI- 351 (740)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHh------cchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcC-CcchHH-
Confidence 3333444567888777776654442 2222222211 1234445689999999999988875 32 22
Q ss_pred hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhH
Q 002876 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (872)
Q Consensus 169 ~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (872)
...++.+-..++....- |.+. ||..+++.+..+.
T Consensus 352 r~f~eRFk~rILE~~r~-D~d~-VRi~sik~l~~lr 385 (740)
T COG5537 352 RRFVERFKDRILEFLRT-DSDC-VRICSIKSLCYLR 385 (740)
T ss_pred HHHHHHHHHHHHHHHhh-ccch-hhHHHHHHHHHHH
Confidence 24445555555555543 5566 9999999988754
No 346
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.37 E-value=4.1e+02 Score=31.93 Aligned_cols=324 Identities=8% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccc--------cCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHH
Q 002876 504 EIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST--------DETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQN 575 (872)
Q Consensus 504 ~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~--------~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 575 (872)
.+.+.+-..+.++ ..+-....++.++.++..+| .....-..++.-...+.+.+.-..........-.+.
T Consensus 93 ~i~~lv~~W~e~Y---k~n~~~al~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e~~~e~es~DYpl~~~g~~~k 169 (1048)
T KOG2011|consen 93 PIEELVDEWIEDY---KENRDKALLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTELFDERESGDYPLTSKGPEWK 169 (1048)
T ss_pred hHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHHHHhhhhhccCcCCCCCHHHH
Q ss_pred HHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHH
Q 002876 576 EIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVE 655 (872)
Q Consensus 576 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~ 655 (872)
..+...+..+..++...+.. -..|-..+|..++..+.. .-..-..++-..+....-.+..++-.+.-.|.
T Consensus 170 ~fr~~~~~fl~~lV~q~q~~------s~l~d~~lmd~~is~Lta----mSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls 239 (1048)
T KOG2011|consen 170 NFRENFCEFLPTLVSQCQYG------SCLFDSFLMDDLISWLTA----MSDSQVRAFRHTATLAAMKLMTALVSVALNLS 239 (1048)
T ss_pred HHHHHHHHHHHHHHHHhccC------CccccchhHHHHHHHHHH----hccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhcC-----------CChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHH-HHHccCCCCCCCCchhHHHHHHHHHHH
Q 002876 656 MGLQN-----------FEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQL-LKDLSSNQLHRSVKPPIFSCFGDIALA 723 (872)
Q Consensus 656 ~~l~~-----------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l-~~~l~~~~~~~~v~~~~~~~l~~i~~~ 723 (872)
....+ .....-|...+.......+...+.+..++..+...+ +..+.+- .+++|..++..+|.-+..
T Consensus 240 ~~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV--~~~IRaiCiqeLgiWi~~ 317 (1048)
T KOG2011|consen 240 SHNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDV--DPDIRAICIQELGIWIKS 317 (1048)
T ss_pred HhhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccC--chHHHHHHHHHHHHHHHh
Q ss_pred hccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhc
Q 002876 724 IGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYM 803 (872)
Q Consensus 724 ~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 803 (872)
+++.|. =+..+..+.=.|+++ ...||..++.++..+... +. ....+..+...+-..+..+.
T Consensus 318 yP~~Fl--~dsYLKYiGWtLsDk-------------~~~VRl~~lkaL~~L~e~--~~-~~~~L~lFtsRFK~RIVeMa- 378 (1048)
T KOG2011|consen 318 YPEIFL--SDSYLKYIGWTLSDK-------------NGTVRLRCLKALIKLYEK--DE-DKDKLELFTSRFKDRIVEMA- 378 (1048)
T ss_pred ccHHHh--cchHHHHhcceeecC-------------ccHHHHHHHHHHHHHHhc--cc-cchHHHHHHHHHHHHHHHHH-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 002876 804 EKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISK 868 (872)
Q Consensus 804 ~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 868 (872)
+.+.+.+||...+..+-..... .++...+ +..+...+.+++=+-.+..+.+....+++
T Consensus 379 drd~~~~Vrav~L~~~~~~~~~------g~L~d~d-i~~Vy~Li~d~~r~~~~aa~~fl~~k~~~ 436 (1048)
T KOG2011|consen 379 DRDRNVSVRAVGLVLCLLLSSS------GLLSDKD-ILIVYSLIYDSNRRVAVAAGEFLYKKLFE 436 (1048)
T ss_pred hhhcchhHHHHHHHHHHHHhcc------cccChhH-HHHHHHHHhccCcchHHHHHHHHHHHhhc
No 347
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=57.32 E-value=65 Score=30.14 Aligned_cols=65 Identities=18% Similarity=0.272 Sum_probs=46.9
Q ss_pred HHHHhhhcCcc-hhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 002876 370 PFVEENITKQE-WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (872)
Q Consensus 370 ~~l~~~~~~~~-~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
+.+.....|++ |..|-+....+..+.. ..+.+.++..+...+ .|++..||.+..|+|..++...+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-------~~~~~~~l~~~~~~~-~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-------ETDFDLLLEIIERLL-HDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhCH
Confidence 66777888877 5555554444443333 123577788888888 89999999999999999998754
No 348
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=56.19 E-value=26 Score=23.49 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Q 002876 88 SVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGI 122 (872)
Q Consensus 88 ~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~ 122 (872)
...+++|+.+++.|..+++..|.....+++++...
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCC
Confidence 35678999999999998888888888888888754
No 349
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=55.80 E-value=37 Score=26.80 Aligned_cols=56 Identities=7% Similarity=0.014 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHHHh
Q 002876 425 HVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQG 487 (872)
Q Consensus 425 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~ 487 (872)
..|.++...|+.++...| ...+.+++.++..|.+...+...++..+-.+|..|-+.
T Consensus 4 ~~rH~~VLGL~Alv~a~P-------y~vP~w~P~~l~~La~~~~~~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFP-------YDVPPWMPEVLEELARHANDPQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S---------SS-HHHHHHHHHHTTSSS-SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-------CCCcccHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Confidence 457788899999999875 45577999999998888887778888888899998765
No 350
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=55.73 E-value=1.5e+02 Score=26.38 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcccc---chh-hHHHHHHHHHHHHhhhhhHhhhHHH
Q 002876 575 NEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSA---TAH-EEAMLAIGALAYATGQDFLKYMPEF 650 (872)
Q Consensus 575 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~---~~~-~~a~~~l~~l~~~~~~~~~~~~~~i 650 (872)
..+-..+.+++-.++-+++... +.|.+-.+++--...+...+. ..| -.-+..+..+...++.-+.||+.-+
T Consensus 35 ~~vE~~v~~~~~~lV~KLnE~~-----FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~l 109 (153)
T PF08146_consen 35 DEVESSVISAFVSLVLKLNEAT-----FRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYL 109 (153)
T ss_pred HHHHHHHHHHHHHHHHHcccch-----hHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455668888888999988763 777666666655544433211 122 2345577788888899999999999
Q ss_pred HHHHHhhhcC
Q 002876 651 YKYVEMGLQN 660 (872)
Q Consensus 651 ~~~l~~~l~~ 660 (872)
++.....|+.
T Consensus 110 l~~~~~~L~~ 119 (153)
T PF08146_consen 110 LDNAVDLLKQ 119 (153)
T ss_pred HHHHHHHHHH
Confidence 9888877754
No 351
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.12 E-value=54 Score=32.46 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=63.5
Q ss_pred HHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCccc
Q 002876 372 VEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPII 451 (872)
Q Consensus 372 l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 451 (872)
+...+.+.++.+|.+|+.-+..+... ....+..+-...++.+.+.+ .+..+ -..|+.++.+++.... .
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~-~~~~~--~~~a~~alVnlsq~~~--------l 75 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLL-KDLDP--AEPAATALVNLSQKEE--------L 75 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHc-cCccc--ccHHHHHHHHHHhhHH--------H
Confidence 34556778889999998666555444 22444444456677788888 77776 4556677777777532 3
Q ss_pred CccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHH
Q 002876 452 NQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (872)
Q Consensus 452 ~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~ 486 (872)
....++.++..++..+.| ........|..+.++.+
T Consensus 76 ~~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 76 RKKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 444555555556665555 34455556666666643
No 352
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=54.04 E-value=2e+02 Score=27.58 Aligned_cols=47 Identities=4% Similarity=0.012 Sum_probs=32.9
Q ss_pred HhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccc
Q 002876 681 LEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN 727 (872)
Q Consensus 681 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~ 727 (872)
.+..+..|++-++-..+.......+.+++|+...-++..|...+++.
T Consensus 145 ~k~~~~kh~~~lL~~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~ 191 (223)
T PF10441_consen 145 AKKSLRKHAPYLLANYISLQLKYTLPPEVREALMPGIYALFDVCSQH 191 (223)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCHH
Confidence 33445666777777777777666677788888777777777776643
No 353
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=52.62 E-value=2.9e+02 Score=28.81 Aligned_cols=274 Identities=10% Similarity=0.021 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHh--hccCCchhhhhHHHHHHH
Q 002876 454 GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTV--THREDAGESRLRTAAYET 530 (872)
Q Consensus 454 ~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~--l~~~~~~~~~v~~~~~~~ 530 (872)
.|+..+...+-..+.. ++.......++++.++.+|+.-...++.-...+..++..++=- ++..+...+.+....-+.
T Consensus 65 ~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~llLp~~l~~~k~l~~~l~~ai~k~ 144 (373)
T PF14911_consen 65 EYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDCLLLPTVLQQDKPLPPALLQAIRKS 144 (373)
T ss_pred HHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHHhcccccccCCCCCChHHHHHHHHH
Q ss_pred HHHHHHccc---cCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHH
Q 002876 531 LNEVVRCST---DETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYAD 607 (872)
Q Consensus 531 l~~l~~~~~---~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 607 (872)
+-.+.+..+ ....+|+...+..++..|-.... ...+. ........+.......-+.- ..-.++
T Consensus 145 lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl-----~~~~~---~~~~~l~~~~~~~~~~~~~l------~~~il~ 210 (373)
T PF14911_consen 145 LPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFL-----PASPS---KLVARLSTLLSAFTPRNEEL------RKFILQ 210 (373)
T ss_pred HHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhc-----cCCCc---cccccccccccchhhhhhHH------HHHHHH
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHH----hhhhhHhhhHHHHHHHHhhhcCCC-hhhHHHHHHHHHHHHHHHHh
Q 002876 608 QMMGLFLRVFAIRSATAHEEAMLAIGALAYA----TGQDFLKYMPEFYKYVEMGLQNFE-DYQVCAITVGVVGDLCRALE 682 (872)
Q Consensus 608 ~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~----~~~~~~~~~~~i~~~l~~~l~~~~-~~~v~~~a~~~l~~l~~~~~ 682 (872)
.+....++.-....+.--..++..+-.+... ......-.++.++|.+++.+--.+ .+.+|..+...+..++..+.
T Consensus 211 ~i~~~fl~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 211 VIRSNFLEFKGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred HHHHHHhcCCCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Q ss_pred ccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHH
Q 002876 683 DKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSA 742 (872)
Q Consensus 683 ~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~ 742 (872)
..-.......+...+..+-.+. -..-....+..+..++...++-..+.++.+-..+...
T Consensus 291 ~~~~~~~~~~l~s~lrsfvqk~-l~~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~ 349 (373)
T PF14911_consen 291 VGSSGEPREQLTSVLRSFVQKY-LAHYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDS 349 (373)
T ss_pred ccCcchHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
No 354
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=52.55 E-value=3e+02 Score=28.81 Aligned_cols=89 Identities=10% Similarity=0.140 Sum_probs=56.7
Q ss_pred HHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH--hhhhccCCCCCCcccCccchHHHHHHHHHhc
Q 002876 390 AFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGR--MFEFLHGSTLETPIINQGNCQQIISVLLQSM 467 (872)
Q Consensus 390 ~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 467 (872)
-+..+.+...+..+......+...+..++ +++|..|.+.|+....+ +...+. ......++.++|.|-+..
T Consensus 322 ElEEILe~iep~eFqk~~~PLf~qia~c~-sS~HFQVAEraL~~wnNe~i~~Li~-------~n~~~ilPiiFpaLyr~s 393 (457)
T KOG2085|consen 322 ELEEILEVIEPSEFQKIMVPLFRQIARCV-SSPHFQVAERALYLWNNEYIRSLIS-------QNAEVILPIVFPALYRNS 393 (457)
T ss_pred hHHHHHHhcCHHHHHHHhHHHHHHHHHHc-CChhHHHHHHHHHHHhhHHHHHHHH-------hccceeeehhhHHHHHHH
Confidence 34455555544555566677888888999 99999999888766543 222221 123456677777777776
Q ss_pred cC--ChhHHHHHHHHHHHHHH
Q 002876 468 KD--VPNVAEKACGALYFLAQ 486 (872)
Q Consensus 468 ~d--~~~v~~~a~~al~~l~~ 486 (872)
+. +..+..-++..+..|++
T Consensus 394 k~hWN~~i~~l~~nvlk~f~e 414 (457)
T KOG2085|consen 394 KSHWNQAIHNLILNVLKTFME 414 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 65 34555556666666655
No 355
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=51.65 E-value=2.5e+02 Score=27.74 Aligned_cols=191 Identities=12% Similarity=0.133 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHcccc--------CcHHHHHHHHHHHHHHHHHHHhhhcCChhHH
Q 002876 500 PFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD--------ETAPMVMQLVPLIMMELHQTLEAQKLSSDER 571 (872)
Q Consensus 500 ~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~--------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 571 (872)
..++.+-+.+++.+.+... ...+++.+..++..... ++.-.+-..+|.++..+.+... . . .+.
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t-----~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~--i-~-~~~ 130 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSST-----YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNP--I-Q-PDQ 130 (262)
T ss_pred CCchhHHHHHhCccCCCCc-----HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhccccc--c-c-ccH
Confidence 5677888888888876542 33556666666654321 2233345566776666643210 0 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhH-hhhHHH
Q 002876 572 EKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFL-KYMPEF 650 (872)
Q Consensus 572 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~i 650 (872)
..+ .+.+.|..++..-+.. .+..++. .+.... . ...-..+..++..+.+.|. .+--.+
T Consensus 131 ----~~~-~~A~~La~~a~~~~~~---------~La~il~----~ya~~~--f-r~~~dfl~~v~~~l~~~f~P~~~~~~ 189 (262)
T PF14225_consen 131 ----ECI-EIAEALAQVAEAQGLP---------NLARILS----SYAKGR--F-RDKDDFLSQVVSYLREAFFPDHEFQI 189 (262)
T ss_pred ----HHH-HHHHHHHHHHHhCCCc---------cHHHHHH----HHHhcC--C-CCHHHHHHHHHHHHHHHhCchhHHHH
Confidence 111 2445566665443322 1222222 222211 1 2333445555555555554 444567
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccc
Q 002876 651 YKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN 727 (872)
Q Consensus 651 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~ 727 (872)
+-++...+.+... -++..++.++..+....+-. .|...+++..+++.++.+. -..|+..+-.+....|..
T Consensus 190 l~~Ll~lL~n~~~-w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~-----~~eAL~VLd~~v~~s~s~ 259 (262)
T PF14225_consen 190 LTFLLGLLENGPP-WLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTDL-----WMEALEVLDEIVTRSGSP 259 (262)
T ss_pred HHHHHHHHhCCcH-HHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCcc-----HHHHHHHHHHHHhhcccc
Confidence 7778888876544 68888999999888877643 5577889999999997762 256777777766665543
No 356
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=51.33 E-value=63 Score=28.21 Aligned_cols=47 Identities=28% Similarity=0.278 Sum_probs=30.9
Q ss_pred hhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhc
Q 002876 2 SAEVTQILLNAQS-VDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN 48 (872)
Q Consensus 2 ~~~l~~~l~~~~s-~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~ 48 (872)
+.++.+++..+++ +|+++|+.|-+.|-.++......|-..|..++.+
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~L~~Lldd 62 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDNLENLLDD 62 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHHHHHHcCc
Confidence 4456666666644 6788888888888888765445565556555543
No 357
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=51.09 E-value=3.6e+02 Score=29.35 Aligned_cols=112 Identities=8% Similarity=0.010 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH-HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhc--c
Q 002876 608 QMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP-EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALED--K 684 (872)
Q Consensus 608 ~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~--~ 684 (872)
++.+.++++|++++..+.-.+...+...+.-+..--..++. .++..+.+.+.+.++ ..+....|++.++..++.+ .
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd-aLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD-ALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh-hhhhcchhhhhhhhhcCcchhh
Confidence 46777888888766555444444444433222221122333 477777777765544 7888999999999888763 3
Q ss_pred ccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHH
Q 002876 685 ILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIAL 722 (872)
Q Consensus 685 ~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~ 722 (872)
+.+...-=++.++....++ ...+...++..+-....
T Consensus 510 f~~Lakig~~kvl~~~NDp--c~~vq~q~lQilrNftc 545 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDP--CFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhHHhcCHHHHHHHhcCc--ccccHHHHHHHHHhccc
Confidence 5554444567777777777 67788888887777765
No 358
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.20 E-value=1.5e+02 Score=32.02 Aligned_cols=84 Identities=12% Similarity=0.099 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH--HHHHHHHhhhcCC-ChhhHHHHHHHHHHHHHHHHhcc
Q 002876 608 QMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP--EFYKYVEMGLQNF-EDYQVCAITVGVVGDLCRALEDK 684 (872)
Q Consensus 608 ~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~~ 684 (872)
..+-.+.+-+++.+..+.--|+.+|..+++.||+.|.-.+. .+++-+++...+. .+..||..++.+|......++.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~- 116 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG- 116 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC-
Confidence 55666777777777778888999999999999999885553 4888888888776 6779999999999999888863
Q ss_pred ccccHHHH
Q 002876 685 ILPYCDGI 692 (872)
Q Consensus 685 ~~~~~~~i 692 (872)
...|++++
T Consensus 117 ~~~~~~~~ 124 (470)
T KOG1087|consen 117 PDGYLPDY 124 (470)
T ss_pred CCCcchhH
Confidence 23344443
No 359
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=50.06 E-value=4.7e+02 Score=30.44 Aligned_cols=247 Identities=10% Similarity=0.048 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHH---HHHHHHHH
Q 002876 477 ACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPM---VMQLVPLI 553 (872)
Q Consensus 477 a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~---~~~l~~~l 553 (872)
|..+...++..| .+.+..+...++..+...+.+. +++++..+..++..++...++. ++| ++.+++.+
T Consensus 76 amea~~kLL~~C------~eq~n~F~ssfL~mv~~LLes~---~~~~~ilg~~sf~~F~~i~~d~-~sy~~~yd~Fi~kf 145 (819)
T KOG1877|consen 76 AMEAYDKLLQAC------KEQINLFVSSFLRMVQKLLESN---NDEMQILGTNSFVKFANIEEDG-PSYHRNYDFFISKF 145 (819)
T ss_pred HHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHhcC---CCceeeehhhHHHHHHhhcccC-chhhhhhHHHHHHH
Confidence 555666666666 3455666677777777777665 3556667788888887666532 222 23344444
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhH-hHHHHHHHHHHHHhccc--------cc-
Q 002876 554 MMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQ-YADQMMGLFLRVFAIRS--------AT- 623 (872)
Q Consensus 554 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~--------~~- 623 (872)
.+...+. ++.+....++...+.+|+.++...-..+-...+..+ +.+++++.+.-.++..+ ..
T Consensus 146 ~~l~he~--------~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~~~~S~s~~ 217 (819)
T KOG1877|consen 146 SSLCHER--------GDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLGKRESDSRI 217 (819)
T ss_pred HHHhhcc--------cchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhcccccCcccc
Confidence 4333321 111222245555666777666554211111111111 24556666554444321 00
Q ss_pred -----------h---hhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHH-HHHHHHHHHHHHHHh-ccccc
Q 002876 624 -----------A---HEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVC-AITVGVVGDLCRALE-DKILP 687 (872)
Q Consensus 624 -----------~---~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~-~~a~~~l~~l~~~~~-~~~~~ 687 (872)
. ..-+-.++-++... ..+...+..++..++..+....-|..- ..|+.++..++..+. +.-.+
T Consensus 218 ~~~~~~~a~~~~~~p~vla~~cl~~l~~~--A~~g~~iR~~l~pl~~~~d~h~~w~p~n~fav~~~~~vi~~iq~q~s~~ 295 (819)
T KOG1877|consen 218 RTFSLLAAGDKTSDPKVLAERCLRELLGR--AKFGTNIRNALKPLLSHLDFHELWTPPNGFAVHVFKIVIYLIQRQYSYF 295 (819)
T ss_pred cCccccccCCcccCcchhHHHHHHHhhcc--ccccchHHHHHHHHHhccccceeecCCCccchHHHHHHHHHHhhccchH
Confidence 0 11122233333322 123334566666666655433222222 234455555554433 22233
Q ss_pred cHHHHHHHHHHHccCCCCCCCCchhHH-HHHHHHHHHhccchHHhHHHHHHHHHHHHhhcc
Q 002876 688 YCDGIMTQLLKDLSSNQLHRSVKPPIF-SCFGDIALAIGENFEKYLMYAMPMLQSAAELSV 747 (872)
Q Consensus 688 ~~~~i~~~l~~~l~~~~~~~~v~~~~~-~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~ 747 (872)
++..++..|........ ....+..++ .++..++.. ...|+.-.++..+...+....
T Consensus 296 v~~~li~hLd~~~~~~~-~~r~~~~iv~~~~~~i~~~---~v~ps~l~i~n~l~rhLR~si 352 (819)
T KOG1877|consen 296 VIQELINHLDNKKLVAK-KPRLGLSIVLVSIALIAAT---SVGPSVLIIFNDLLRHLRKSI 352 (819)
T ss_pred HHHHHHHHHHhhccccc-CccccchhHHHHHHHHHhc---ccchHHHHHHHHHHHHHHhhc
Confidence 34555555544432221 233333332 233333222 344555555666666665544
No 360
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=49.54 E-value=2.6e+02 Score=27.24 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=74.8
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhhc---C-----CCCch---hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcccc---
Q 002876 100 TLSSPAHDARSTASQVVAKVAGIEL---P-----HKQWP---ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSD--- 165 (872)
Q Consensus 100 ~l~~~~~~vr~~~a~~l~~i~~~~~---~-----~~~~~---~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~--- 165 (872)
++.++++.|.+.+.++.+.++...+ . +..|. .+-..++..+.+.++.+|..+++.+..++-..++.
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 3567788888888888777765432 1 12464 56667888888889999999999998766432210
Q ss_pred ---------ccc----------------hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHH
Q 002876 166 ---------AVE----------------QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYI 220 (872)
Q Consensus 166 ---------~l~----------------~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i 220 (872)
.++ ......++..++..+....-++.+-.+.+.++..++..=|.. .+.+
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~------~~~I 154 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQF------MSRI 154 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGG------HHHH
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHH------HHHH
Confidence 010 134566777788777753336677777777777766432221 2455
Q ss_pred HHHHHHh
Q 002876 221 MRVVCEA 227 (872)
Q Consensus 221 l~~l~~~ 227 (872)
++.+..+
T Consensus 155 l~~ll~~ 161 (239)
T PF11935_consen 155 LPALLSF 161 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6655554
No 361
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=47.53 E-value=41 Score=19.71 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHhh
Q 002876 381 WRQREAATYAFGSIL 395 (872)
Q Consensus 381 ~~~r~aal~~l~~l~ 395 (872)
|.+|+.+..+|+.+.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 678999999999873
No 362
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=47.51 E-value=1.6e+02 Score=28.78 Aligned_cols=35 Identities=9% Similarity=0.007 Sum_probs=26.4
Q ss_pred HHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccc
Q 002876 693 MTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN 727 (872)
Q Consensus 693 ~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~ 727 (872)
.+.+.+.+.++..+.-+|..++.++..++......
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~ 147 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS 147 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45666667777766678999999999998765543
No 363
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=47.43 E-value=2.1e+02 Score=25.59 Aligned_cols=97 Identities=11% Similarity=0.101 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhHHhhHhhHH-HHHHHHHH
Q 002876 191 DVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSP--EVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAK 267 (872)
Q Consensus 191 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~ 267 (872)
+.-..++.++..++++---.++. ..+.+++.+....+.+ +..+.+.++..|-.++.+.+.....--+ --++.++.
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~--l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~ 109 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDT--LSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIR 109 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhh--ccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHH
Confidence 55566677777666532112221 1134555555554422 6788889999999998876542211111 12455566
Q ss_pred HHhcCChhhHHHHHHHHHHHHH
Q 002876 268 AVREDEEPVALQAIEFWSSVCD 289 (872)
Q Consensus 268 ~~~~~~~~v~~~a~~~~~~l~~ 289 (872)
.++..+.+++..++..+..+..
T Consensus 110 hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHHh
Confidence 6777888899888887777664
No 364
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=47.35 E-value=4.7e+02 Score=29.57 Aligned_cols=112 Identities=8% Similarity=0.079 Sum_probs=55.9
Q ss_pred CcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChh---------------HHHHHHHHHHHHHH
Q 002876 422 PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPN---------------VAEKACGALYFLAQ 486 (872)
Q Consensus 422 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~---------------v~~~a~~al~~l~~ 486 (872)
-++.++.+-...++.++.. +..|++.++..+++.+...+. +..+...+|..+++
T Consensus 86 ~~~~~v~~y~~Fl~~Lvsa-----------~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~ 154 (563)
T PF05327_consen 86 RDEDFVEAYIQFLINLVSA-----------QPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILR 154 (563)
T ss_dssp S-HHHHHHHHHHHHHHHHH------------GGGHHHHHHHHHHGGGS-HHHHHH---------------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 3456666666666666653 356888899888888874321 22345567777766
Q ss_pred hcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHH
Q 002876 487 GFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMM 555 (872)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~ 555 (872)
.++. -...+.+.+.+.+..... .......-+..+-.+...+|.-....+.-++..+++
T Consensus 155 lvP~----------s~~~L~~~l~~~FP~~~~-~~~~~~~Yv~NlL~l~~Y~P~L~~~Il~lIi~rLi~ 212 (563)
T PF05327_consen 155 LVPT----------SPSFLIPILVQNFPHKRK-SKDEHVNYVRNLLRLTEYCPELRSDILSLIIERLIK 212 (563)
T ss_dssp H-GG----------GHHHHHHHHHHTS--TTS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHHH
T ss_pred HcCC----------CHHHHHHHHHHcCcCCCC-ChHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHH
Confidence 5421 223444444444433321 222333445556666666655444444444444443
No 365
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=47.24 E-value=2.5e+02 Score=26.52 Aligned_cols=150 Identities=17% Similarity=0.098 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHH
Q 002876 17 GTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSF 96 (872)
Q Consensus 17 ~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 96 (872)
+.+|+-|.+...+.... ......+..+..+ ...+.|.+|+.++...... .+.+ ....
T Consensus 33 p~lr~lak~~~~~~~~~--~~~~~l~~~L~~~--~~~E~~~la~~il~~~~~~---------------~~~~----~~~~ 89 (213)
T PF08713_consen 33 PDLRKLAKDIYKELKLS--EELYELADELWES--GYREERYLALLILDKRRKK---------------LTEE----DLEL 89 (213)
T ss_dssp HHHHHHHHHHHHHHCTS--HHHHHHHHHHHCS--SCHHHHHHHHHHHHHCGGG-----------------HH----HHHH
T ss_pred HHHHHHHHHHHhhcccc--hHHHHHHHHHcCC--chHHHHHHHHHHhHHHhhh---------------hhHH----HHHH
Confidence 44555555555555443 3344433334443 3588999998888654431 1112 1223
Q ss_pred HHHhcCCC-ChHHHHHH-HHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHH
Q 002876 97 ILKTLSSP-AHDARSTA-SQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (872)
Q Consensus 97 ll~~l~~~-~~~vr~~~-a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~ 174 (872)
+-..+.+- +..+...+ ..+++.+.... +++.+.+.+-+.++++-.|+.++.++..... ....+.
T Consensus 90 ~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~--------~~~~~~ 155 (213)
T PF08713_consen 90 LEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEALELLEKWAKSDNEWVRRAAIVMLLRYIR--------KEDFDE 155 (213)
T ss_dssp HHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGG--------GCHHHH
T ss_pred HHHHhccCCcchhhhHHHHHHHHHHHHhh------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH--------hcCHHH
Confidence 33444433 45555555 55666665432 6788888899999999999888777633322 355677
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHhHh
Q 002876 175 ILTAVVQGMNASESNNDVRLAATRALYNALG 205 (872)
Q Consensus 175 i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (872)
++..+...+. |++.-||.+.--+|..+..
T Consensus 156 ~l~~~~~~~~--d~~~~vq~ai~w~L~~~~~ 184 (213)
T PF08713_consen 156 LLEIIEALLK--DEEYYVQKAIGWALREIGK 184 (213)
T ss_dssp HHHHHHHCTT--GS-HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcC--CchHHHHHHHHHHHHHHHH
Confidence 7777777777 7889999998888887543
No 366
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=45.95 E-value=4.8e+02 Score=29.33 Aligned_cols=287 Identities=15% Similarity=0.097 Sum_probs=0.0
Q ss_pred hhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCC
Q 002876 365 VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGS 444 (872)
Q Consensus 365 ~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 444 (872)
++.-+..+.+++.+.+..++-+++..+|....+.-.+. +..+..+...+ ++++..+|.++..-+|-.......+
T Consensus 413 vd~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~-----dpalALLsdyv-~~~~s~~ri~aIlGLglayaGsq~e 486 (878)
T KOG2005|consen 413 VDKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC-----DPALALLSDYL-QSSSSIHRIGAILGLGLAYAGSQRE 486 (878)
T ss_pred chhhHHHHHHHhhcCCchhhhccceeeeeecccccccc-----CHHHHHHHHhc-cCCCceeehHHhhhhHHhhcCCchH
Q ss_pred CCCCcccCccchHHHHHHHHHhccC---ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhh
Q 002876 445 TLETPIINQGNCQQIISVLLQSMKD---VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGES 521 (872)
Q Consensus 445 ~~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~ 521 (872)
.++..|...+.| ...|..-|..+|+.+.- +..-......|++.++..-...-. ++
T Consensus 487 -------------~V~~lL~Pi~~d~~~~~ev~~~aslsLG~Ifv--------Gscn~dvts~ilqtlmekse~El~-d~ 544 (878)
T KOG2005|consen 487 -------------EVLELLSPIMFDTKSPMEVVAFASLSLGMIFV--------GSCNEDVTSSILQTLMEKSETELE-DQ 544 (878)
T ss_pred -------------HHHHHHhHHhcCCCCchhHHHHHHhhcceeEE--------ecCChHHHHHHHHHHHHhhhhhhh-ch
Q ss_pred hhHHHHHHHHHHHHHccc-cCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Q 002876 522 RLRTAAYETLNEVVRCST-DETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY 600 (872)
Q Consensus 522 ~v~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 600 (872)
..| +-+|+.-.-..+ .+..+-+...+..+-+.+.. .++.+-..+...|...
T Consensus 545 ~~R---FL~LGL~llflgkqe~~d~~~e~~~~i~~~~~~---------------------~~~~lv~~caYaGTGn---- 596 (878)
T KOG2005|consen 545 WFR---FLALGLALLFLGKQESVDAVVETIKAIEGPIRK---------------------HESILVKSCAYAGTGN---- 596 (878)
T ss_pred HHH---HHHHHHHHHHhcccchHHHHHHHHHHhhhHHHH---------------------HHHHHHHHhhccccCc----
Q ss_pred HhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Q 002876 601 VFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRA 680 (872)
Q Consensus 601 ~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 680 (872)
....-. ...+-.+=.+....-.++-+.+||--...+|+++. .+-.+..+-+.+. ..++.+|...--+++-++-.
T Consensus 597 -vl~Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig--~eM~lR~f~h~l~-yge~~iRravPLal~llsvS 670 (878)
T KOG2005|consen 597 -VLKIQS--QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIG--SEMVLRHFGHLLH-YGEPHIRRAVPLALGLLSVS 670 (878)
T ss_pred -eEEech--hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhh--hHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhccC
Q ss_pred HhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHH
Q 002876 681 LEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 721 (872)
Q Consensus 681 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~ 721 (872)
-++ -+++..|-+...+. +.++..+++.++|-+.
T Consensus 671 NPq------~~vlDtLsk~shd~--D~eva~naIfamGLiG 703 (878)
T KOG2005|consen 671 NPQ------VNVLDTLSKFSHDG--DLEVAMNAIFAMGLIG 703 (878)
T ss_pred CCc------chHHHHHHHhccCc--chHHHHHHHHHhcccc
No 367
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=45.88 E-value=45 Score=22.36 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhh
Q 002876 89 VKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123 (872)
Q Consensus 89 ~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~ 123 (872)
..+++|+.+++.|...+.. |.....+++++....
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 3578999999999988766 888888888887643
No 368
>PHA01351 putative minor structural protein
Probab=45.37 E-value=4.9e+02 Score=29.24 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcC----CChhHHHHHHHH
Q 002876 811 VTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSS----DDHMIKESAEWA 862 (872)
Q Consensus 811 v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~----~~~~~~~~~~~~ 862 (872)
++.-.+.++.+.. ++.|...+.-+ +...+++..-. -||....++.|.
T Consensus 230 i~de~~tt~ke~i---kepfisdfkis--~reifneiglgdipfadp~f~~i~~wv 280 (1070)
T PHA01351 230 IRDELATTLKEFI---KEPFISDFKIS--AREIFNEIGLGDLPFADPPFQLIGRWV 280 (1070)
T ss_pred HHHHHHHHHHHHh---hccchhhhhhh--HHHHHHhcCCCCCCCCCCcHHHHHHHH
Confidence 4444444444433 34555444442 66666664422 456777777775
No 369
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=43.86 E-value=1.8e+02 Score=25.94 Aligned_cols=100 Identities=10% Similarity=0.135 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHH-HHHHHHHHH
Q 002876 665 QVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMY-AMPMLQSAA 743 (872)
Q Consensus 665 ~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~-il~~l~~~l 743 (872)
+....++.++..+....--.....-+.++..+......+..+..+...++..+..+.......+...-++ -++.|...+
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 3344455555555553211122233566677777666665466777788888888877554333322222 366666666
Q ss_pred hhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhc
Q 002876 744 ELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQG 777 (872)
Q Consensus 744 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~ 777 (872)
+.. + ..++..++-.+.+++..
T Consensus 112 q~~------~-------~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 112 QVS------N-------QEIQTNAIALINALFLK 132 (160)
T ss_pred HcC------C-------HHHHHHHHHHHHHHHhc
Confidence 654 2 23555565556666554
No 370
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=41.48 E-value=4.3e+02 Score=27.50 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=39.1
Q ss_pred CcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHh
Q 002876 422 PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (872)
Q Consensus 422 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
...+-+.-|...++++..++|+ .....+.+-+....| +..||..|..-|..||..
T Consensus 36 ~~~k~k~lasq~ip~~fk~fp~-----------la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFKHFPS-----------LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred cchHHHHHHHHHHHHHHhhCch-----------hhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 4456677888999999998862 223455555555555 578899999999988764
No 371
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=38.93 E-value=56 Score=32.41 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=41.2
Q ss_pred hHHHHHHHhhcCCChh-HHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHh
Q 002876 131 ELIGALLSNIHQLPPH-TKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (872)
Q Consensus 131 ~l~~~l~~~l~~~~~~-~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (872)
+++..|...+++.+++ .-..|+.=+..+++.. |+....-.-...-..+++.++ +++++||-.|++++..++.
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~-PE~~~vl~Kyg~k~~im~L~n--h~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS-PEINAVLSKYGVKEIIMNLIN--HDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC-chHHHHHHHhhhHHHHHHHhc--CCCchhhHHHHHHHHHHHh
Confidence 4566666666665443 2222344444444444 443211111222345666677 8999999999999998764
No 372
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=38.75 E-value=3.9e+02 Score=26.21 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC----CchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc--------ccccchhhHH
Q 002876 106 HDARSTASQVVAKVAGIELPHK----QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS--------SDAVEQDHVN 173 (872)
Q Consensus 106 ~~vr~~~a~~l~~i~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~--------~~~l~~~~~~ 173 (872)
+.+|-+.-.+++.+++.+-++. -..|++|..+..+..+++-.+..|..++.+|..+-. ++.+ ..+.
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf--~av~ 187 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERF--FAVA 187 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHH--HHHH
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHH--HHHH
Confidence 6788888888999987653210 135788888888888888888888888887765421 2222 2344
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHhH
Q 002876 174 KILTAVVQGMNASESNNDVRLAATRALYNAL 204 (872)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (872)
.++..++..+.. ++++.+-+..++|...+.
T Consensus 188 ~vL~~mV~~l~~-~pS~RLLKhIIrCYlRLs 217 (262)
T PF04078_consen 188 MVLNKMVEQLVK-QPSPRLLKHIIRCYLRLS 217 (262)
T ss_dssp HHHHHHHHHHHH-S--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcc-CCChhHHHHHHHHHHHHc
Confidence 444444444433 678877777787777654
No 373
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=38.52 E-value=4e+02 Score=26.27 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHhh----hhhHhhhHHHHHHHHhhhcCC-Chh--hHHH-HHHH-HHH
Q 002876 606 ADQMMGLFLRVFAI-RSATAHEEAMLAIGALAYATG----QDFLKYMPEFYKYVEMGLQNF-EDY--QVCA-ITVG-VVG 675 (872)
Q Consensus 606 ~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~i~~~l~~~l~~~-~~~--~v~~-~a~~-~l~ 675 (872)
+..+-..++..|-. ...-.-+.+...+..++..+- +.+.......+..++..+.+. ... ..|. ..+- ++.
T Consensus 94 i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~ 173 (255)
T PF10350_consen 94 IEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLIL 173 (255)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHH
Confidence 44444555444433 344456677777788777665 344444455666666666654 121 2333 3333 444
Q ss_pred HHHHHHhccccccHHHHHHHHHHHccCCCCC------CCCchhHHHHHHHHHHH--hccchHHhHHHHHHHHHHHH
Q 002876 676 DLCRALEDKILPYCDGIMTQLLKDLSSNQLH------RSVKPPIFSCFGDIALA--IGENFEKYLMYAMPMLQSAA 743 (872)
Q Consensus 676 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~------~~v~~~~~~~l~~i~~~--~~~~~~~~l~~il~~l~~~l 743 (872)
.+...-+..-.+.++..+..|+++...+... ..-+..+++++..|..- +++...+|+...+..-++.+
T Consensus 174 aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f 249 (255)
T PF10350_consen 174 AILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGF 249 (255)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC
Confidence 4444444333367888899999988776421 13455688888887753 45666777776655554444
No 374
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=37.90 E-value=48 Score=30.08 Aligned_cols=77 Identities=19% Similarity=0.125 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHHHh
Q 002876 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQG 487 (872)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~ 487 (872)
+..++.++... +-.++.-...+...+. .+.+ .-....++.|-.... ++.||..|...|..+.
T Consensus 38 p~aL~~~l~sv-~w~~~~~v~e~~~lL~---~W~~-----------i~~~~aLeLL~~~f~-d~~VR~yAV~~L~~~s-- 99 (171)
T cd00872 38 PQALPKLLLSV-KWNKRDDVAQMYQLLK---RWPK-----------LKPEQALELLDCNFP-DEHVREFAVRCLEKLS-- 99 (171)
T ss_pred cHHHHHHHhhC-CCCCHHHHHHHHHHHH---CCCC-----------CCHHHHHHHCCCcCC-CHHHHHHHHHHHHhCC--
Confidence 44466666666 5555554444444444 3321 111244444444333 3889999888877753
Q ss_pred cccCCCCCCCCchhHHHHHHHH
Q 002876 488 FEDAISPSSPLTPFFQEIVQAL 509 (872)
Q Consensus 488 ~~~~~~~~~~l~~~l~~i~~~l 509 (872)
.+.+..|++++++.+
T Consensus 100 -------d~eL~~yL~QLVQaL 114 (171)
T cd00872 100 -------DDELLQYLLQLVQVL 114 (171)
T ss_pred -------HHHHHHHHHHHHHHH
Confidence 456677888877765
No 375
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=37.86 E-value=6.2e+02 Score=28.28 Aligned_cols=82 Identities=11% Similarity=0.061 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCC-CcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHH
Q 002876 405 PLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLE-TPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALY 482 (872)
Q Consensus 405 ~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~ 482 (872)
.++.+++..+...+ ...|..|+..||..+-++.+.++-.... .+.....++..++..+-+.-.| .|.-...-..|.+
T Consensus 566 ~FLkTVv~KLFEFM-hE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg 644 (1053)
T COG5101 566 SFLKTVVKKLFEFM-HEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACG 644 (1053)
T ss_pred HHHHHHHHHHHHHH-hhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHh
Confidence 45677888888888 8889999999999999999877522110 0112245566666665555555 3433333334444
Q ss_pred HHHHh
Q 002876 483 FLAQG 487 (872)
Q Consensus 483 ~l~~~ 487 (872)
.++..
T Consensus 645 ~vIse 649 (1053)
T COG5101 645 MVISE 649 (1053)
T ss_pred HHHhc
Confidence 44443
No 376
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=37.65 E-value=3.3e+02 Score=28.18 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=60.3
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHH-Hhh---hhhHhhhHH---HHHHHHhhhcC-CCh--------hhHHHHHHHH
Q 002876 610 MGLFLRVFAIRSATAHEEAMLAIGALAY-ATG---QDFLKYMPE---FYKYVEMGLQN-FED--------YQVCAITVGV 673 (872)
Q Consensus 610 ~~~l~~~l~~~~~~~~~~a~~~l~~l~~-~~~---~~~~~~~~~---i~~~l~~~l~~-~~~--------~~v~~~a~~~ 673 (872)
+..+...|+.....+...++..+..++. ..| ..+...++- .+|.+...=.. .+. +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6666777777777777789999999988 333 333333333 33444321110 001 2788888887
Q ss_pred HHHHHHHHhccccc-cH--HHHHHHHHHHccCCCCCCCCchhHHHHHHH
Q 002876 674 VGDLCRALEDKILP-YC--DGIMTQLLKDLSSNQLHRSVKPPIFSCFGD 719 (872)
Q Consensus 674 l~~l~~~~~~~~~~-~~--~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~ 719 (872)
+-.+....+..+.. .+ ..++..+++.+..+ +.++-..++.++.+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKD 184 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHH
Confidence 77776665433221 11 12466677777665 34444444444443
No 377
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=36.91 E-value=6e+02 Score=27.84 Aligned_cols=74 Identities=11% Similarity=0.124 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcC
Q 002876 581 LCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQN 660 (872)
Q Consensus 581 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 660 (872)
++.+++.+.+.-+.. +.|+++.++..+.+ .++.- ..++..+-.+ +.+.-.+.+.+++|.|.-.+.+
T Consensus 182 LLrvlS~Vye~~P~~------i~PhlP~l~~lL~q----~~p~~-~~ll~~l~~L---I~Qk~~evL~~ciP~L~g~l~d 247 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQP------INPHLPELLALLSQ----LEPEQ-YHLLRLLHVL---IKQKQLEVLQKCIPFLIGHLKD 247 (851)
T ss_pred HHHHHHHHHhcCCCc------cCcccHHHHHHhcC----CCHHH-HHHHHHHHHH---HHhccHHHHHHHHHHHHHHhcc
Confidence 455666665554433 66776666555432 22211 1222222222 2344456678888888888876
Q ss_pred CChhhHHH
Q 002876 661 FEDYQVCA 668 (872)
Q Consensus 661 ~~~~~v~~ 668 (872)
.+..+++-
T Consensus 248 s~~~~i~~ 255 (851)
T KOG3723|consen 248 STHNDIIL 255 (851)
T ss_pred ccchhHHH
Confidence 65444443
No 378
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.67 E-value=3.6e+02 Score=29.30 Aligned_cols=104 Identities=12% Similarity=0.064 Sum_probs=70.7
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccc-hhhHHHHHH
Q 002876 99 KTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE-QDHVNKILT 177 (872)
Q Consensus 99 ~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~-~~~~~~i~~ 177 (872)
..+.++|+.+--.+|..+ ..+ + ..-++.+..|...+.+.++.+...||.+|..+++.| ++.|. +-.-..++.
T Consensus 12 ~~l~~pDWa~NleIcD~I----N~~-~-~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNC-G~~fh~~Va~k~fL~ 84 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLI----NST-E-GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNC-GYSFHLQVASKEFLN 84 (470)
T ss_pred ccccCccHHHHHHHHHHH----hcC-c-cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence 345566665555555443 222 1 233688999999999888888899999999999999 55552 112345566
Q ss_pred HHHhcccCCCCCHHHHHHHHHHHHHhHhhchh
Q 002876 178 AVVQGMNASESNNDVRLAATRALYNALGFAQA 209 (872)
Q Consensus 178 ~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (872)
-++........+..||..++..+..|-..+++
T Consensus 85 emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 85 EMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 66666665227889999999999987765443
No 379
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=35.34 E-value=2.1e+02 Score=23.97 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhc---cccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHH
Q 002876 663 DYQVCAITVGVVGDLCRALED---KILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLM 733 (872)
Q Consensus 663 ~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~ 733 (872)
+.+-...|+.....+++.-.. ++..+..+++..++.+=.+-+ ..+..+.-..++-.++...+....+|+-
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~-~~~Fe~~R~~alval~v~~P~~~~~~L~ 90 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFD-IENFEELRQNALVALVVAAPEKVAPYLT 90 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT---TTTTHHHHHHHHHHHHHSGGGHHH-HH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCC-ccCHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 455567888888888887654 788888888888877533221 3344455566777777777766665543
No 380
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=35.17 E-value=3.3e+02 Score=24.39 Aligned_cols=121 Identities=19% Similarity=0.243 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCH
Q 002876 111 TASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNN 190 (872)
Q Consensus 111 ~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~ 190 (872)
...+.+..+++.-. ..-+++++.+.+.+.+........-..+|..++... |-.+ .++...+- .++..+. .-+.
T Consensus 37 LG~~IL~~~fk~h~--~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~-p~~v-le~~~~l~-~~ld~l~--~lp~ 109 (158)
T PF14676_consen 37 LGIQILLELFKVHE--MIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKA-PLTV-LECSSKLK-ELLDYLS--FLPG 109 (158)
T ss_dssp HHHHHHHHHHHH-G--GGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH--HHHH-S-S-HHHH-GGGGGTT--TS-H
T ss_pred HHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHC-hHHH-HHHHHHHH-HHHHHHH--hCCH
Confidence 44455555554321 133556666665554332221112356777777665 3322 22222222 2223333 3344
Q ss_pred HHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 002876 191 DVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLV 244 (872)
Q Consensus 191 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~ 244 (872)
++-..-++++.-++..-+ ..+|.++-++-+.+-+.+.+.|..|...+.
T Consensus 110 ~~a~~ll~Al~PLi~~s~------~lrd~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 110 DVAIGLLRALLPLIKFSP------SLRDSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp HHHHHHHHHHHHHHTT-H------HHHHHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 554455555554443221 235677777777777778888888876553
No 381
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=34.82 E-value=6.5e+02 Score=27.62 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhc
Q 002876 761 NSLRNGILEAFSGIFQG 777 (872)
Q Consensus 761 ~~~~~~~~~~~~~l~~~ 777 (872)
-..|-.+++.++.++.+
T Consensus 214 G~~RlkI~ELiAeLLhc 230 (475)
T PF04499_consen 214 GFERLKICELIAELLHC 230 (475)
T ss_pred chHHHHHHHHHHHHHhC
Confidence 34456677777777665
No 382
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=34.68 E-value=5e+02 Score=28.35 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 002876 793 HILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAI 866 (872)
Q Consensus 793 ~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 866 (872)
.+.+.+.+.+.+ ++..+...+...+++...-+.+--..++..+ +...+.....++|...+....|...++
T Consensus 431 ~I~elLi~~Ls~--Peimi~~~~t~~icn~vv~fsnL~~~fL~~~--iIdvl~~~v~sKDdaLqans~wvlrHl 500 (743)
T COG5369 431 PIVELLIDALSN--PEIMIEFPDTIDICNKVVPFSNLGAGFLEKS--IIDVLVNLVMSKDDALQANSEWVLRHL 500 (743)
T ss_pred chHHHHHHHhcC--ccceeeccchhhhhheeeeccchHHHHHHhh--HHHHHHHHhhcchhhhhhcchhhhhhh
Confidence 567778888885 3445566666666666665533333444553 666666666688999999999998865
No 383
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=33.98 E-value=4.6e+02 Score=25.66 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhc
Q 002876 763 LRNGILEAFSGIFQG 777 (872)
Q Consensus 763 ~~~~~~~~~~~l~~~ 777 (872)
+|.++++++..++..
T Consensus 129 vR~aa~~aL~~l~~~ 143 (249)
T PF06685_consen 129 VRMAAISALAFLVHE 143 (249)
T ss_pred HHHHHHHHHHHHHHc
Confidence 677888888888764
No 384
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=33.73 E-value=2.3e+02 Score=23.52 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=47.1
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHh
Q 002876 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNA 203 (872)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~ 203 (872)
+++...+.+.+....+..+..++.++..++..+ ...........+.+.+..... ..++++|....+.+..+
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~-~~~~~~~~~~~~~~~f~~~~~--~~~~~~r~kl~rl~~iW 106 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNV-GRKYKEFFSEFLVPLFLDAYE--KVDEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHc
Confidence 456666666666666788889999999999987 332211222233555555555 57888888888777764
No 385
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=33.47 E-value=46 Score=19.09 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhcChhHHHHHHHHHhh
Q 002876 19 VRKQAEESLKQYQEQNLPGFLLSLAGELV 47 (872)
Q Consensus 19 ~r~~a~~~L~~~~~~~~~~~~~~L~~~l~ 47 (872)
||..|...|.++.. +..+..|...+.
T Consensus 1 VR~~Aa~aLg~igd---~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD---PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S---HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC---HHHHHHHHHHhc
Confidence 68888999998876 677777776654
No 386
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=33.47 E-value=2e+02 Score=25.22 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHH
Q 002876 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFN 263 (872)
Q Consensus 218 ~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~ 263 (872)
+.+.+.+..++.++++++++.|++|+...=. +.+.||-+.+-.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l~pY~d~L~~ 58 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYLTPYKDNLEN 58 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHhHHHHHHH
Confidence 4566777788889999999999999987322 345555444433
No 387
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=33.07 E-value=40 Score=32.66 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 002876 794 ILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAI 866 (872)
Q Consensus 794 i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 866 (872)
++|++...-+. ...+.+|-++++.||.+.+.-..+...|+-.+++++-.|+ .++..++--|..|.++...|
T Consensus 96 LyPfL~tt~k~-r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr-~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 96 LYPFLNTTSKT-RPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR-IMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp GHHHHH----S-HHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH-HHHHS-HHHHHHHHHHHHHH
T ss_pred ehhhhhccccc-cccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH-HHHhccHHHHHHHHHHHHHH
Confidence 44555333222 2346789999999999999776777788888876666666 55577999999999988765
No 388
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=32.72 E-value=6.2e+02 Score=26.81 Aligned_cols=112 Identities=14% Similarity=0.178 Sum_probs=61.5
Q ss_pred chhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHh--h
Q 002876 129 WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG--F 206 (872)
Q Consensus 129 ~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~--~ 206 (872)
..+.+..|.....++....-.+++.++..-. ....+...+.+.-. ++. -.+..|+..+.+|+..... .
T Consensus 5 lsD~lkKLKiTaVd~teds~~~C~~~~~qa~-----a~~nt~t~ek~~~~---~i~--~~~~tv~~~qssC~A~~sk~ev 74 (604)
T KOG4500|consen 5 LSDTLKKLKITAVDKTEDSLEGCLDCLLQAL-----AQNNTETSEKIQAS---GIM--TASDTVYLFQSSCLADRSKNEV 74 (604)
T ss_pred HHHHHHHhhccccCcccchhHHHHHHHHHhH-----hhhChhhHHHHHhc---cee--eccchhhhhhHHHHHHHhhhHH
Confidence 4455555555445555555666666664332 22223334444322 222 2356778777777776431 1
Q ss_pred chhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q 002876 207 AQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 250 (872)
Q Consensus 207 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 250 (872)
-++.|........+++.+.+..++++.++..++++.|+.++...
T Consensus 75 ~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn 118 (604)
T KOG4500|consen 75 ERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDN 118 (604)
T ss_pred HHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccC
Confidence 11111111001235666666677888999999999999988654
No 389
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=31.70 E-value=9.1e+02 Score=28.41 Aligned_cols=208 Identities=14% Similarity=0.067 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHH
Q 002876 383 QREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISV 462 (872)
Q Consensus 383 ~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~ 462 (872)
.|..--..+..+..... ... ....+|.+...+ -++++.+|.-|...+.++...-. .....++-..+.+.
T Consensus 98 l~~~F~~~f~~~~~~~~-~~~---~~~~lPG~~~~L-f~~~~~~r~WA~~~~~~l~~~~~------~~t~~~~~~av~~~ 166 (727)
T PF12726_consen 98 LRELFDAIFSSLQSKKP-LKL---PKELLPGMTYFL-FDGNPERRRWAERWWQRLKRPPY------SITDEEFDWAVLDE 166 (727)
T ss_pred HHHHHHHHHHHHhccCC-ccc---cccccchhhhhh-hcCCHHHHHHHHHHHHHcCCCcc------CCchhhhhHHHHHH
Confidence 44444455555544332 111 156678888888 88999999999999888876410 00112222223322
Q ss_pred HH---HhccC---ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHH-----HHHHHHHhhccCCchhhhhHHHHHHHH
Q 002876 463 LL---QSMKD---VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQE-----IVQALLTVTHREDAGESRLRTAAYETL 531 (872)
Q Consensus 463 l~---~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~-----i~~~l~~~l~~~~~~~~~v~~~~~~~l 531 (872)
+. ..++. ++.....--..+..+++.++ .+.+..++.. ++..++..+.... .......+.++
T Consensus 167 l~~~l~~i~~~~~~~~~~~~fW~g~~~Il~~ld-----~~~i~~~l~~~~~~~i~~L~~~hL~~~~---~~~l~~lL~~l 238 (727)
T PF12726_consen 167 LSSHLYRISPNNYNPDSVIRFWSGFSLILRLLD-----KEQITHSLRALELDPIYRLLLNHLSSNL---SPPLPILLRCL 238 (727)
T ss_pred HHHHHHHhccCCCChhHHHHHHHHHHHHHHHcc-----HHHHHHHHhccccchHHHHHHHHhhccc---chhHHHHHHHH
Confidence 22 22221 23333333344555555443 3334444333 6677777776652 22334788999
Q ss_pred HHHHHccccCcHHHHHH-----HHH------HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Q 002876 532 NEVVRCSTDETAPMVMQ-----LVP------LIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY 600 (872)
Q Consensus 532 ~~l~~~~~~~~~~~~~~-----l~~------~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 600 (872)
..+.+..|.++-..... ++. ..-+.+.+....... ..+. . ....+..+..++.++....
T Consensus 239 ~~lL~k~~~~FW~~~~~~~p~~ild~If~np~f~~~L~~~~~~~~~-~~~~----~-~~~~~sWi~pf~~SL~~~~---- 308 (727)
T PF12726_consen 239 SILLEKLGSDFWDAMGPISPQVILDQIFDNPAFKKLLLQSQEDEIS-ESDD----D-LPDLLSWISPFLRSLSPSQ---- 308 (727)
T ss_pred HHHHHhCHHHHhcccCCCCHHHHHHHHhCChHHHHHHHhhccCCcc-ccch----h-hHHHHHHHHHHHHHhcccc----
Confidence 99999998644222211 111 111122221110000 0000 0 1235667777777777552
Q ss_pred HhhHhHHHHHHHHHHHHhcc
Q 002876 601 VFMQYADQMMGLFLRVFAIR 620 (872)
Q Consensus 601 ~~~~~~~~i~~~l~~~l~~~ 620 (872)
-.+.+..++..+++.++++
T Consensus 309 -~~~~~~~l~~~Ll~~~q~~ 327 (727)
T PF12726_consen 309 -RSQACRKLLHFLLERLQHD 327 (727)
T ss_pred -hhhHHHHHHHHHHHHHhcc
Confidence 3345667777777777764
No 390
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=31.61 E-value=5.1e+02 Score=25.47 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=38.6
Q ss_pred HHHHHHHhhcC-CChhHHHHHHHHHHHhhhhccccccchhhHHHH--HHHHHhcccCCCCCHHHHHHHHHHHHHhH
Q 002876 132 LIGALLSNIHQ-LPPHTKQATLETLGYICEEVSSDAVEQDHVNKI--LTAVVQGMNASESNNDVRLAATRALYNAL 204 (872)
Q Consensus 132 l~~~l~~~l~~-~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i--~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (872)
-++.++..+.. ..+.+..+++.++-.+.-+. |... ..++.+ +..+...+++...+.++|...++.+.-++
T Consensus 134 ~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~-p~N~--r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 134 NMELLLDLLSPSNPPAIQSACLDTLVCILLDS-PENQ--RDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred hHHHHHHHhccCCCchHHHHHHHHHHHHHHcC-hHHH--HHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHH
Confidence 34455666632 34566777777776655443 2211 122222 23444455544667788888888777644
No 391
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=31.08 E-value=3.4e+02 Score=28.71 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=74.6
Q ss_pred HHHHHhcCCCC--hHHHHHHHHHHHHHHHhhcCCCCc-hhHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhccccccchh
Q 002876 95 SFILKTLSSPA--HDARSTASQVVAKVAGIELPHKQW-PELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQD 170 (872)
Q Consensus 95 ~~ll~~l~~~~--~~vr~~~a~~l~~i~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~l~~~ 170 (872)
+.|++.+..++ ..||..++.++..+...+-- +.. .-=+..++...+.. .+...+..+-++..++++.+.... .-
T Consensus 183 D~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~-d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~-~L 260 (832)
T KOG3678|consen 183 DLLLRMFQAPNLETSVRVEAARLLEQILVAENR-DRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQ-RL 260 (832)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhh-hHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHH-HH
Confidence 45777788886 57899999999988765411 111 00133344433322 334555566666666665411000 00
Q ss_pred hHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 002876 171 HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (872)
Q Consensus 171 ~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 249 (872)
.....+..++-... -.++.+-..+.-+++++..+-............+-+-++-+..+.+.-.|--+|-....++.+
T Consensus 261 vaa~~lD~vl~~~r--Rt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 261 VAAGGLDAVLYWCR--RTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred Hhhcccchheeecc--cCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 11112233333344 345666555555677765432211111011122333344444455666677777777766654
No 392
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.12 E-value=2.7e+02 Score=21.79 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCC---HHHHHHHHHHHHHHHhc
Q 002876 5 VTQILLNAQSVD---GTVRKQAEESLKQYQEQ 33 (872)
Q Consensus 5 l~~~l~~~~s~~---~~~r~~a~~~L~~~~~~ 33 (872)
..++|....+.+ -++|+.|++....+.+.
T Consensus 18 ~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e 49 (93)
T COG1698 18 VMQLLDEIIQDTTVPRNIRRAAEEAKEALNNE 49 (93)
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHHHHhCC
Confidence 455555543332 35788888888877664
No 393
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=28.05 E-value=1.1e+03 Score=28.16 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=45.5
Q ss_pred cccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHh-hhc---CCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHH
Q 002876 620 RSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEM-GLQ---NFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQ 695 (872)
Q Consensus 620 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~-~l~---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~ 695 (872)
.+..+|-..+.++..+.....+. |-..++..+.- .+. -..+..+|..+...+..++..++...---+-++++.
T Consensus 442 s~~~Vrik~~~~l~~~~l~nr~~---yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA 518 (1697)
T KOG3687|consen 442 SRGAVRIKVLDVLSFVLLINRQF---YEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEA 518 (1697)
T ss_pred ccceEEEeeHHHHHHHHhhhhhh---hHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHH
Confidence 45567777777777665433321 11223332211 111 123458899999999999999986554445577777
Q ss_pred HHHH
Q 002876 696 LLKD 699 (872)
Q Consensus 696 l~~~ 699 (872)
+.+.
T Consensus 519 ~~~r 522 (1697)
T KOG3687|consen 519 VMAR 522 (1697)
T ss_pred HHhc
Confidence 7766
No 394
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=27.81 E-value=3.6e+02 Score=22.53 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=47.3
Q ss_pred HHHHHHhcc--ccchhhHHHHHHHHHHHHh---hhhhHhhhHHHHHHHHhhhcCCC--h-hhHHHHHHHHHHHHHHHHhc
Q 002876 612 LFLRVFAIR--SATAHEEAMLAIGALAYAT---GQDFLKYMPEFYKYVEMGLQNFE--D-YQVCAITVGVVGDLCRALED 683 (872)
Q Consensus 612 ~l~~~l~~~--~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~i~~~l~~~l~~~~--~-~~v~~~a~~~l~~l~~~~~~ 683 (872)
.++..|... +.+-.+.++.....++..- |.....+-..++..++..=++.+ + .+.|..|+-. ++-..+.
T Consensus 7 Dll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alva---l~v~~P~ 83 (114)
T PF10193_consen 7 DLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVA---LVVAAPE 83 (114)
T ss_dssp HHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHH---HHHHSGG
T ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHH---HHHHhhH
Confidence 344455533 4556677888888887644 44788888888887775433222 1 2444444443 3333443
Q ss_pred cccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHH
Q 002876 684 KILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGD 719 (872)
Q Consensus 684 ~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~ 719 (872)
.. .+.+.+.+-+.+.+-..|..++.+++.
T Consensus 84 ~~-------~~~L~~~f~~~~~Sl~qR~~iL~~l~~ 112 (114)
T PF10193_consen 84 KV-------APYLTEEFFSGDYSLQQRMSILSALSL 112 (114)
T ss_dssp GH-------HH-HHHHHTTS---THHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 33 333444444443344455666776654
No 395
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=27.74 E-value=5e+02 Score=28.45 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC------------ccccccCchHHHHHHHHHhc
Q 002876 792 PHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSN------------AGPLIQQSVSSKDFLNECLS 849 (872)
Q Consensus 792 ~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~------------~~~~~~~~~~v~~~l~~~~~ 849 (872)
..+++.+...+. +..+.++..+|..++++|+....+. +...+...+.|..++..+..
T Consensus 61 q~LI~~Li~~L~-p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~ 129 (475)
T PF04499_consen 61 QNLIPRLIDLLS-PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLN 129 (475)
T ss_pred hCHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhc
Confidence 357778888877 5788999999999999998876422 22223333356666666663
No 396
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=27.59 E-value=2.1e+02 Score=26.08 Aligned_cols=47 Identities=17% Similarity=0.000 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhc
Q 002876 15 VDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKN 65 (872)
Q Consensus 15 ~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~ 65 (872)
.|....+++...|.+...-++.+.+. +|...-.+..+|.+|...|++
T Consensus 51 ~~~~~v~e~~~lL~~W~~i~~~~aLe----LL~~~f~d~~VR~yAV~~L~~ 97 (171)
T cd00872 51 NKRDDVAQMYQLLKRWPKLKPEQALE----LLDCNFPDEHVREFAVRCLEK 97 (171)
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHH----HCCCcCCCHHHHHHHHHHHHh
Confidence 34445555555555553333333332 222222346666666655543
No 397
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=27.10 E-value=2.8e+02 Score=21.23 Aligned_cols=46 Identities=24% Similarity=0.285 Sum_probs=39.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHhhc
Q 002876 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQ-NLPGFLLSLAGELVN 48 (872)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~-~~~~~~~~L~~~l~~ 48 (872)
++|..-+...+..++....+-...|+++..+ +.+.+...|+.+|..
T Consensus 6 ~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~ 52 (80)
T cd07354 6 QEFSRKVDAILGDDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQT 52 (80)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCc
Confidence 4677778888899999999999999998766 888899999888864
No 398
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=26.92 E-value=1.2e+02 Score=30.18 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Q 002876 89 VKAQIKSFILKTLSSPAHDARSTASQVVAKVAGI 122 (872)
Q Consensus 89 ~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~ 122 (872)
.+...|+.++++++++++.||-.|-+++..+...
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 3456778888888888888888888887777653
No 399
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=26.72 E-value=1.1e+03 Score=27.75 Aligned_cols=31 Identities=6% Similarity=-0.075 Sum_probs=23.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 002876 219 YIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (872)
Q Consensus 219 ~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 249 (872)
.+++.+.-++-+++++.|..|...+..+-+.
T Consensus 120 ~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~ 150 (727)
T PF12726_consen 120 ELLPGMTYFLFDGNPERRRWAERWWQRLKRP 150 (727)
T ss_pred cccchhhhhhhcCCHHHHHHHHHHHHHcCCC
Confidence 4555556666678999999999999997664
No 400
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=26.25 E-value=2.7e+02 Score=25.20 Aligned_cols=13 Identities=38% Similarity=0.107 Sum_probs=6.0
Q ss_pred ChhHHHHHHHHHh
Q 002876 52 PVESRKLAGLILK 64 (872)
Q Consensus 52 ~~~~r~~a~~~l~ 64 (872)
+..+|.+|...|+
T Consensus 91 ~~~VR~yAV~~L~ 103 (166)
T cd00870 91 NPVVRKYAVSRLK 103 (166)
T ss_pred CHHHHHHHHHHHH
Confidence 3445555544443
No 401
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=26.17 E-value=3.2e+02 Score=25.38 Aligned_cols=75 Identities=11% Similarity=0.037 Sum_probs=48.1
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHh
Q 002876 652 KYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKY 731 (872)
Q Consensus 652 ~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~ 731 (872)
+.+.....+.+.+ +|..++.++...... ..+.+.++..+-..+.++ +.-++.++.++|..++...++...+|
T Consensus 108 ~~~~~w~~s~~~~-~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~--~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSENEW-VRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDE--EYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHHhCCcHH-HHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 5666666665554 455555444443332 345677777777777766 56788899999999988765554455
Q ss_pred HHH
Q 002876 732 LMY 734 (872)
Q Consensus 732 l~~ 734 (872)
+..
T Consensus 180 l~~ 182 (197)
T cd06561 180 LEK 182 (197)
T ss_pred HHH
Confidence 443
No 402
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=24.31 E-value=3e+02 Score=24.52 Aligned_cols=12 Identities=25% Similarity=0.135 Sum_probs=6.1
Q ss_pred ChhHHHHHHHHH
Q 002876 52 PVESRKLAGLIL 63 (872)
Q Consensus 52 ~~~~r~~a~~~l 63 (872)
++.+|++|...|
T Consensus 84 ~~~vr~yAv~~L 95 (152)
T cd00864 84 DPVVRQYAVRVL 95 (152)
T ss_pred CHHHHHHHHHHH
Confidence 355555555444
No 403
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=24.30 E-value=1.3e+02 Score=27.79 Aligned_cols=77 Identities=18% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHHHh
Q 002876 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQG 487 (872)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~ 487 (872)
+..++.++... +-.++.....+...+.......+. ..++.|..... ++.||..|+..|..+
T Consensus 43 p~aL~~~L~sv-~W~~~~e~~e~~~ll~~W~~~~~~--------------~aL~LL~~~~~-~~~Vr~yAV~~L~~~--- 103 (184)
T smart00145 43 PKALPKFLLSV-NWSDADEVAQALSLLKKWAPLDPE--------------DALELLSPKFP-DPFVRAYAVERLESA--- 103 (184)
T ss_pred hHHHHHHHhcC-CCCCHHHHHHHHHHHHcCCCCCHH--------------HHHHHhCccCC-CHHHHHHHHHHHHhC---
Q ss_pred cccCCCCCCCCchhHHHHHHHH
Q 002876 488 FEDAISPSSPLTPFFQEIVQAL 509 (872)
Q Consensus 488 ~~~~~~~~~~l~~~l~~i~~~l 509 (872)
+.+.+.-|++++++.+
T Consensus 104 ------~d~~l~~yLpQLVQaL 119 (184)
T smart00145 104 ------SDEELLLYLLQLVQAL 119 (184)
T ss_pred ------CHHHHHHHHHHHHHHH
No 404
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=24.08 E-value=1.1e+03 Score=26.66 Aligned_cols=163 Identities=12% Similarity=0.035 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhcc---------ccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccc-hHHhH
Q 002876 663 DYQVCAITVGVVGDLCRALEDK---------ILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN-FEKYL 732 (872)
Q Consensus 663 ~~~v~~~a~~~l~~l~~~~~~~---------~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~-~~~~l 732 (872)
+.+++.+.+.++..+..-+-.. ....+..+.+.+.+.+..+. ++ ..++-....+....+++ |...+
T Consensus 144 ~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~k-hw---~~afPL~t~lLCvS~~e~F~~~W 219 (552)
T PF14222_consen 144 KSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPK-HW---NVAFPLVTTLLCVSPKEFFLSNW 219 (552)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcc-hh---hhHHHHHHHHHhcCcHHHHHHHH
Confidence 3467777788777776554321 22344555666666665542 32 22444444444444433 33322
Q ss_pred H-HHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhccc-CC--CcccccccchHHHHHHHHHHhcCCCCC
Q 002876 733 M-YAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFK-GS--PKTQLLMPYAPHILQFLDSLYMEKDMD 808 (872)
Q Consensus 733 ~-~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--~~~~~~~~~~~~i~~~l~~~l~~~~~~ 808 (872)
. .++..+..-++++ ..|..++.++.+++=.+- -. .........++.++..+...-+ ..
T Consensus 220 ~~~~i~~~~~klKdk---------------~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~k---k~ 281 (552)
T PF14222_consen 220 LPSLIESLISKLKDK---------------ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGK---KG 281 (552)
T ss_pred HHHHHHHHHhhcCCh---------------hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCC---Cc
Confidence 2 2333333333222 456667888887765543 11 0122233445555555542222 22
Q ss_pred HHHHH-HHHHHHHHHHHHhcCCccccccCchHHHHHHHHHh
Q 002876 809 DVVTK-TAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECL 848 (872)
Q Consensus 809 ~~v~~-~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~ 848 (872)
.-.+. .-+..+-+++..+|-....|.... ++.++|..-.
T Consensus 282 ~i~~D~~~~~~lv~ii~~I~~~~~df~~~~-iI~~LL~~~~ 321 (552)
T PF14222_consen 282 WIPRDPEPLNPLVQIIRFIGYKHLDFAFRN-IIFPLLNVSF 321 (552)
T ss_pred ccCCChhhhhhHHHHHHhHhhhCcchHHHH-HHHHHHcccc
Confidence 22233 556667777777776655555333 6777777655
No 405
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=23.48 E-value=1.5e+02 Score=26.42 Aligned_cols=76 Identities=18% Similarity=0.130 Sum_probs=41.4
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHHHhc
Q 002876 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGF 488 (872)
Q Consensus 409 ~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~ 488 (872)
..+|.++..+ .-.++.-+..+...+. .+.+ .-....++.+..... ++.||..|+..|..+.
T Consensus 39 ~~lp~~L~sv-~w~~~~~~~e~~~lL~---~W~~-----------~~~~~aL~LL~~~~~-~~~vr~yAv~~L~~~~--- 99 (152)
T cd00864 39 KALPKLLKSV-NWNDDEEVSELYQLLK---WWAP-----------LSPEDALELLSPKYP-DPVVRQYAVRVLESAS--- 99 (152)
T ss_pred HHHHHHHHHc-cCCCHHHHHHHHHHHh---cCCC-----------CCHHHHHHHcCCcCC-CHHHHHHHHHHHHhCC---
Confidence 4456666666 5555554444444333 2221 011233443333332 4888888888777642
Q ss_pred ccCCCCCCCCchhHHHHHHHH
Q 002876 489 EDAISPSSPLTPFFQEIVQAL 509 (872)
Q Consensus 489 ~~~~~~~~~l~~~l~~i~~~l 509 (872)
.+.+.-|++++++.+
T Consensus 100 ------~~~l~~ylpQLVQaL 114 (152)
T cd00864 100 ------DDELLLYLPQLVQAL 114 (152)
T ss_pred ------HHHHHHHHHHHHHHH
Confidence 345667888877766
No 406
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=23.43 E-value=6.1e+02 Score=30.36 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=36.5
Q ss_pred cccccchHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHHHHHHhcCCccccccCchHHHHHHHHHh
Q 002876 785 QLLMPYAPHILQFLDSLYMEKDMDDVVTKTA-IGVLGDLADTLGSNAGPLIQQSVSSKDFLNECL 848 (872)
Q Consensus 785 ~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a-~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~ 848 (872)
+...|.+.+.+-++.+.|..-... +++..+ -.+++.|+..|-...+.|+|. +..+|..+.
T Consensus 557 D~~HpVVTPalllm~~~L~q~~v~-s~~di~~GlfL~~l~l~y~~~SKR~vPE---vinFL~~~L 617 (840)
T PF04147_consen 557 DFRHPVVTPALLLMSEYLSQCRVR-SLRDIASGLFLCTLLLEYQSLSKRFVPE---VINFLLGLL 617 (840)
T ss_pred cccCcchhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHHHhcccChH---HHHHHHHHH
Confidence 456677777777777777642222 343333 345677777777777777776 555555443
No 407
>PF10487 Nup188: Nucleoporin subcomplex protein binding to Pom34; InterPro: IPR018864 This is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes []. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localised on both faces of the NPC at the nuclear end, being integrally bound to the C terminus of Pom34p [].
Probab=22.85 E-value=1.4e+03 Score=27.74 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=57.1
Q ss_pred hhhhHHHHHHHHHhhCCCCC------CcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCcc
Q 002876 381 WRQREAATYAFGSILEGPSP------EKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (872)
Q Consensus 381 ~~~r~aal~~l~~l~~~~~~------~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (872)
|..++.+...+|.+.+.... ..-.+.+..++..+...+ +... .+ ..+...+..+..... ..+
T Consensus 515 w~~~ysgw~lLG~~Le~~~~~~~~~d~~~~~~v~~ii~Ll~~l~-~~~~-~~-~~~~~iL~~~S~~l~---------~~D 582 (931)
T PF10487_consen 515 WEYEYSGWALLGRWLENLLKSYSELDSLQDERVAEIIDLLASLL-SSDN-SI-EDSKEILEEASAYLD---------HSD 582 (931)
T ss_pred EeecchHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHH-ccCc-ch-hHHHHHHHHHhhccc---------cCc
Confidence 88899999888887654321 111234566666666666 3322 22 234556666666543 235
Q ss_pred chHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhc
Q 002876 455 NCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGF 488 (872)
Q Consensus 455 ~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
.+.-++..+-+.+.. +-.+-..+...+..++..+
T Consensus 583 IisvI~~ile~~L~~~~v~ll~scl~fL~aL~p~~ 617 (931)
T PF10487_consen 583 IISVIFDILERSLQSRNVELLTSCLRFLTALLPIF 617 (931)
T ss_pred HHHHHHHHHHHHcccCChHHHHHHHHHHHHHhccC
Confidence 566666666666664 4566677777777776654
No 408
>KOG4346 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.83 E-value=1.2e+03 Score=26.68 Aligned_cols=284 Identities=10% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 002876 503 QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLC 582 (872)
Q Consensus 503 ~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (872)
|..+.-+++.+...+ +..+.+.|+..+..++...|..+.+...+++..++.. +++-......+.-.
T Consensus 507 PaYV~Dl~emL~~~E--~yE~~eaAL~nae~LI~r~pt~~rq~A~eLlq~lLhL------------qn~f~~~~F~etq~ 572 (849)
T KOG4346|consen 507 PAYVADLFEMLLEKE--KYEVFEAALFNAENLINRRPTGFRQIAEELLQRLLHL------------QNNFGTPKFKETQV 572 (849)
T ss_pred chHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH------------HHhcCccchhhhhH
Q ss_pred HHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhh---------------hhHhhh
Q 002876 583 GCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQ---------------DFLKYM 647 (872)
Q Consensus 583 ~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~---------------~~~~~~ 647 (872)
.++-.++-+.++. ..+.+...+...-+--+-..|.-.+.+++.-+..++. --.|..
T Consensus 573 ~aiVa~~vT~p~p---------capylcrqf~a~n~~YS~rQRiliL~vi~lAA~els~ddn~~~e~~~~~ql~pG~ph~ 643 (849)
T KOG4346|consen 573 DAIVAACVTQPPP---------CAPYLCRQFIAPNQGYSIRQRILILSVIHLAADELSADDNKLEECVMAQQLRPGGPHL 643 (849)
T ss_pred HHHHHHHhcCCCc---------chhHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHhCccccccccccccccCCCCCCcc
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHH---------------------------HHHHHHHHhccccccHHHHHHHHHHHc
Q 002876 648 PEFYKYVEMGLQNFEDYQVCAITVGV---------------------------VGDLCRALEDKILPYCDGIMTQLLKDL 700 (872)
Q Consensus 648 ~~i~~~l~~~l~~~~~~~v~~~a~~~---------------------------l~~l~~~~~~~~~~~~~~i~~~l~~~l 700 (872)
..+.|...+.=...++...+..+-.+ ...+....|.-|.|.+...-.....-+
T Consensus 644 ~~~~prt~~~~~e~es~p~~~lasewR~~ve~rirakTrrisk~pr~gp~~~kaNRl~~vag~ffFpLL~~~r~l~~~kl 723 (849)
T KOG4346|consen 644 SIILPRTINTDYEDESEPHRLLASEWRRMVEARIRAKTRRISKTPREGPRAGKANRLAQVAGYFFFPLLVSLRRLENAKL 723 (849)
T ss_pred cccCCCCCCCChhhhcCcchhhhHHHHHHHHHHHHhhhhhhhcCCCCCCCCCcccchhhhhhhhhHHHHhhcccccchhh
Q ss_pred cCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccC
Q 002876 701 SSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKG 780 (872)
Q Consensus 701 ~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~ 780 (872)
... +..+-...+.++|-+....+.. +....+...++..+.-.. ..-...||.+.+.+...++.....
T Consensus 724 lgi--D~llLv~ll~Tls~L~~~~~n~--~~~~AM~relid~~~~~R---------f~~da~Vr~alL~a~l~vL~~lpg 790 (849)
T KOG4346|consen 724 LGI--DSLLLVSLLMTLSMLYVRCGNC--PQIHAMSRELIDYATPHR---------FSEDAKVRTALLIAHLNVLTLLPG 790 (849)
T ss_pred cCc--cHHHHHHHHHHHHHHheeecCC--chHHHHHHHHHHHHHHHh---------cchhhHHHHHHHHHHHHHHHhCcH
Q ss_pred CCcccccccchHHHHHHHHHHhcCC-C---CCHHHHHHHHHHHHHH
Q 002876 781 SPKTQLLMPYAPHILQFLDSLYMEK-D---MDDVVTKTAIGVLGDL 822 (872)
Q Consensus 781 ~~~~~~~~~~~~~i~~~l~~~l~~~-~---~~~~v~~~a~~~l~~i 822 (872)
....+.|.|.+-.....+..++..+ + .++..|..+...+..+
T Consensus 791 ~~Lae~f~~~Lle~~~wlndv~esp~d~~~~~E~cR~La~svL~ll 836 (849)
T KOG4346|consen 791 DLLAELFVPALLEWFDWLNDVLESPSDSQLEKEMCRQLAHSVLKLL 836 (849)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHHHHH
No 409
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.73 E-value=1.8e+03 Score=28.93 Aligned_cols=193 Identities=12% Similarity=0.074 Sum_probs=117.4
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCC---ChHHHHHHHHH
Q 002876 39 LLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSP---AHDARSTASQV 115 (872)
Q Consensus 39 ~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~---~~~vr~~~a~~ 115 (872)
...|...+.+ ...+.+|++.++.+.+.+.. |...+.-..-...+.. +.+. ++.-...+..+
T Consensus 53 ~~~l~s~~~~-~~~~p~rkL~s~~i~rl~~~------------gd~f~~~~~l~~c~d~---l~d~~~~~~q~k~~a~~~ 116 (2067)
T KOG1822|consen 53 EQQLISRLTN-GAGPPTRKLISVAIARLISN------------GDSFSLYSRLNSCNDF---LSDGSPSDPQRKLAALSC 116 (2067)
T ss_pred HHHHHHHHcc-CCCchhHHHHHHHHHHHHhc------------cchhhHHHHHHHhhhh---hhcCCCccHHHHHhhccc
Confidence 3345566666 56789999999998887752 3334333332222222 3343 34455567778
Q ss_pred HHHHHHhhcCC--CCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHH
Q 002876 116 VAKVAGIELPH--KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVR 193 (872)
Q Consensus 116 l~~i~~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr 193 (872)
++....+..+. ....+.+..+.+..+......|......+...++.++...-.......+.-.....+. +.+..||
T Consensus 117 l~~~y~~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~ll--d~s~~v~ 194 (2067)
T KOG1822|consen 117 LGSLYEHYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLL--DRSFNVK 194 (2067)
T ss_pred hHHHHHHhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhh--hhhHHHH
Confidence 88888776431 2355666666666666666677777777777666652111112233344444444454 6777899
Q ss_pred HHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q 002876 194 LAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 250 (872)
Q Consensus 194 ~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 250 (872)
.++.+|+..+....+..+. ..+.+......+......+..+|-+..+++..++...
T Consensus 195 iaa~rc~~a~s~~~~~~~~-~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 195 IAAARCLKAFSNLGGPGLG-TSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred HHhHHHHHHHHhhcCcccc-chhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 9999998887755444442 1222445556666667788889988888888877643
No 410
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=22.59 E-value=2e+02 Score=26.45 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHHHhhCCCCCCcchHHH--HHHHHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 002876 381 WRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQDPNNHVKDTTAWTLGRMF 438 (872)
Q Consensus 381 ~~~r~aal~~l~~l~~~~~~~~~~~~~--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~ 438 (872)
......++.|+.+++... ......+ +..+..+...+ ..+++.+|..++..|+.++
T Consensus 130 ~~~~~~~l~Clkal~n~~--~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTK--YGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHTSSH--HHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccH--HHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 455677788998888753 2222222 56778888899 8999999999999998775
No 411
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=22.54 E-value=8.7e+02 Score=25.08 Aligned_cols=109 Identities=15% Similarity=0.210 Sum_probs=64.7
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhh--HHHHHHHHHHhhc----CCC---------HHHHHHHH
Q 002876 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDME--RDYIMRVVCEATL----SPE---------VKIRQAAF 240 (872)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~~il~~l~~~~~----~~~---------~~~r~~~~ 240 (872)
+..+...++ .....+...+++.+..++.+.++....+.. .+.=++.+..++. +.. +.+|...+
T Consensus 58 ~k~lyr~L~--~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 58 LKLLYRSLS--SSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHhC--cCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 455666666 445677779999999988754422211100 0111122222211 111 38999999
Q ss_pred HHHHHHHHHhHHhhHh-hHH--HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002876 241 ECLVAISSTYYEKLAP-YIQ--DIFNITAKAVREDEEPVALQAIEFWSS 286 (872)
Q Consensus 241 ~~l~~l~~~~~~~~~~-~~~--~l~~~~~~~~~~~~~~v~~~a~~~~~~ 286 (872)
+.+..++...+..+.. .+. .++..++..+..++.++....++++..
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKD 184 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 9999998876544332 222 457778888887777887777776654
No 412
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=21.45 E-value=1.4e+02 Score=27.04 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=21.9
Q ss_pred ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHH
Q 002876 470 VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQAL 509 (872)
Q Consensus 470 ~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l 509 (872)
++.||..|+..|..+. .+.+.-|++++++.+
T Consensus 91 ~~~VR~yAV~~L~~~s---------d~eL~~yL~QLVQaL 121 (166)
T cd00870 91 NPVVRKYAVSRLKLAS---------DEELLLYLLQLVQAL 121 (166)
T ss_pred CHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHH
Confidence 5788888888877652 355667777776665
No 413
>PLN03205 ATR interacting protein; Provisional
Probab=21.08 E-value=9.6e+02 Score=25.04 Aligned_cols=112 Identities=12% Similarity=0.115 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCC---------CCchhHHHHHHHhhcC-CChhHHHHHHHHHHHhhh
Q 002876 91 AQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---------KQWPELIGALLSNIHQ-LPPHTKQATLETLGYICE 160 (872)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~---------~~~~~l~~~l~~~l~~-~~~~~r~~al~~l~~i~~ 160 (872)
+.+...|+++..-++..+...+-.++-.+..|..+. .+|..+++.+.+.... ..+.+|..|+.++..|.-
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 345667777777777666555555555555554331 3688888888776543 356788888888887765
Q ss_pred hccccccchhh--HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhH
Q 002876 161 EVSSDAVEQDH--VNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (872)
Q Consensus 161 ~~~~~~l~~~~--~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (872)
..++. .+... ...++..+.+.++- +.-..|++.|+..|.-++
T Consensus 402 ssna~-~eREkFG~~~VfESiaQLLkk-EaGl~VqKealhLLfLLL 445 (652)
T PLN03205 402 STDAY-TARESFVSKEVFESISLLLRK-EGGLHVRKEAIHLFYLLL 445 (652)
T ss_pred ccchh-HHHHHhcchHHHHHHHHHHHH-hccchhhHHHHHHHHHHH
Confidence 54221 10111 12344444444442 455678899988876554
No 414
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=20.82 E-value=3.1e+02 Score=25.87 Aligned_cols=113 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHh-----
Q 002876 132 LIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG----- 205 (872)
Q Consensus 132 l~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~----- 205 (872)
+++.+...-++. -+..|..++-+++.+.+.-+++.+..-...+++|.++..+. .++.--+.-|+-+++.++.
T Consensus 146 lypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme--~gSElSktvaifI~qkil~dDvGL 223 (315)
T COG5209 146 LYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIME--LGSELSKTVAIFIFQKILGDDVGL 223 (315)
T ss_pred eHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHH--hhhHHHHHHHHHHHHHHhccchhH
Q ss_pred -hchhhccChhhHHHHHH-HHHHhhcCCCHHHHHHHHHHHHHH
Q 002876 206 -FAQANFSNDMERDYIMR-VVCEATLSPEVKIRQAAFECLVAI 246 (872)
Q Consensus 206 -~~~~~~~~~~~~~~il~-~l~~~~~~~~~~~r~~~~~~l~~l 246 (872)
|+...++.-...+.+++ .+.++.+.+...+-+.+++|...+
T Consensus 224 qYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRL 266 (315)
T COG5209 224 QYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRL 266 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheee
Done!